Query 012235
Match_columns 467
No_of_seqs 536 out of 2290
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pjz_A Thiopurine S-methyltran 99.7 1.6E-16 5.5E-21 148.9 12.7 132 311-448 18-177 (203)
2 3e23_A Uncharacterized protein 99.7 6.9E-16 2.3E-20 143.7 16.7 154 305-464 32-203 (211)
3 3h2b_A SAM-dependent methyltra 99.7 1.1E-15 3.8E-20 141.2 16.9 151 306-463 33-197 (203)
4 1vl5_A Unknown conserved prote 99.7 7.2E-16 2.5E-20 148.3 16.2 133 307-446 29-189 (260)
5 4hg2_A Methyltransferase type 99.7 1.3E-16 4.5E-21 156.2 11.0 101 320-426 42-142 (257)
6 1nkv_A Hypothetical protein YJ 99.6 1.9E-15 6.6E-20 144.4 15.5 131 307-445 28-185 (256)
7 2p7i_A Hypothetical protein; p 99.6 2.1E-15 7.3E-20 142.1 15.2 126 312-445 39-197 (250)
8 4gek_A TRNA (CMO5U34)-methyltr 99.6 3E-15 1E-19 146.7 16.4 104 313-423 68-182 (261)
9 3cgg_A SAM-dependent methyltra 99.6 7.5E-15 2.6E-19 133.2 17.6 146 313-463 44-195 (195)
10 3dh0_A SAM dependent methyltra 99.6 3.2E-15 1.1E-19 139.6 15.3 148 306-464 28-194 (219)
11 3ujc_A Phosphoethanolamine N-m 99.6 2.2E-15 7.6E-20 144.0 14.4 130 312-446 52-205 (266)
12 1xxl_A YCGJ protein; structura 99.6 4.3E-15 1.5E-19 141.8 16.3 133 306-445 12-172 (239)
13 3pfg_A N-methyltransferase; N, 99.6 3.7E-15 1.2E-19 143.6 15.5 97 320-419 53-151 (263)
14 3ofk_A Nodulation protein S; N 99.6 1.1E-14 3.8E-19 135.8 17.5 151 309-465 45-207 (216)
15 3ou2_A SAM-dependent methyltra 99.6 1.1E-14 3.9E-19 135.0 16.5 130 313-448 44-206 (218)
16 1p91_A Ribosomal RNA large sub 99.6 7.2E-16 2.5E-20 149.1 8.5 169 206-422 4-181 (269)
17 3hnr_A Probable methyltransfer 99.6 2.3E-14 7.7E-19 133.8 18.3 131 309-445 39-199 (220)
18 2o57_A Putative sarcosine dime 99.6 7.3E-15 2.5E-19 144.0 15.5 128 312-446 79-233 (297)
19 3sm3_A SAM-dependent methyltra 99.6 1.8E-14 6.3E-19 134.9 17.4 130 314-447 29-207 (235)
20 3g5l_A Putative S-adenosylmeth 99.6 5.5E-15 1.9E-19 141.4 13.9 124 319-447 46-216 (253)
21 3e8s_A Putative SAM dependent 99.6 1.2E-14 4.1E-19 135.2 15.9 131 308-446 45-208 (227)
22 3l8d_A Methyltransferase; stru 99.6 9.8E-15 3.3E-19 138.1 15.4 126 313-445 51-198 (242)
23 1y8c_A S-adenosylmethionine-de 99.6 9.5E-15 3.2E-19 137.8 15.2 98 319-419 39-142 (246)
24 2xvm_A Tellurite resistance pr 99.6 1.9E-14 6.5E-19 131.6 16.1 132 306-445 23-171 (199)
25 2gb4_A Thiopurine S-methyltran 99.6 1.2E-14 4.1E-19 141.6 15.2 127 314-446 67-226 (252)
26 3bus_A REBM, methyltransferase 99.6 1.8E-14 6.2E-19 139.1 16.2 132 309-447 55-216 (273)
27 3dli_A Methyltransferase; PSI- 99.6 8.5E-15 2.9E-19 139.4 13.4 124 320-448 44-185 (240)
28 3kkz_A Uncharacterized protein 99.6 1.6E-14 5.5E-19 139.6 15.5 128 313-448 44-197 (267)
29 4htf_A S-adenosylmethionine-de 99.6 1.3E-14 4.6E-19 141.5 14.4 123 319-446 70-231 (285)
30 3f4k_A Putative methyltransfer 99.6 1.4E-14 4.9E-19 138.4 13.9 127 313-447 44-196 (257)
31 3dlc_A Putative S-adenosyl-L-m 99.6 1.6E-14 5.4E-19 133.6 13.6 122 320-446 46-202 (219)
32 1xtp_A LMAJ004091AAA; SGPP, st 99.6 1.3E-14 4.4E-19 138.2 13.3 128 319-449 95-240 (254)
33 3ege_A Putative methyltransfer 99.6 1.2E-14 3.9E-19 140.7 13.1 131 307-446 26-177 (261)
34 3ccf_A Cyclopropane-fatty-acyl 99.6 3.6E-14 1.2E-18 138.2 16.5 132 307-446 49-209 (279)
35 3bkw_A MLL3908 protein, S-aden 99.6 2.3E-14 7.9E-19 135.3 14.2 135 306-447 34-214 (243)
36 3dtn_A Putative methyltransfer 99.6 4.3E-14 1.5E-18 133.4 16.0 124 319-446 46-213 (234)
37 3vc1_A Geranyl diphosphate 2-C 99.6 2E-14 7E-19 142.7 14.4 126 313-446 115-268 (312)
38 3i9f_A Putative type 11 methyl 99.6 2.5E-14 8.5E-19 128.5 13.6 127 309-447 11-148 (170)
39 3lcc_A Putative methyl chlorid 99.6 6.7E-14 2.3E-18 132.5 16.5 126 320-449 69-209 (235)
40 3g2m_A PCZA361.24; SAM-depende 99.6 1.4E-14 4.9E-19 142.6 12.1 100 320-422 85-193 (299)
41 3ocj_A Putative exported prote 99.6 1.9E-14 6.5E-19 142.5 12.9 143 313-463 116-304 (305)
42 2ex4_A Adrenal gland protein A 99.6 9.2E-14 3.2E-18 132.3 16.8 128 319-449 81-227 (241)
43 2p8j_A S-adenosylmethionine-de 99.5 8E-14 2.7E-18 128.9 15.9 150 312-466 20-207 (209)
44 2a14_A Indolethylamine N-methy 99.5 2.7E-14 9.1E-19 138.8 13.2 144 319-464 57-261 (263)
45 1kpg_A CFA synthase;, cyclopro 99.5 8.4E-14 2.9E-18 135.8 15.6 128 311-446 60-227 (287)
46 3bxo_A N,N-dimethyltransferase 99.5 1.4E-13 4.7E-18 129.7 16.5 98 320-420 43-142 (239)
47 3d2l_A SAM-dependent methyltra 99.5 2.3E-13 8E-18 128.4 18.0 100 313-418 31-136 (243)
48 3jwg_A HEN1, methyltransferase 99.5 2.8E-13 9.5E-18 126.7 17.8 138 307-449 21-194 (219)
49 2yqz_A Hypothetical protein TT 99.5 5E-14 1.7E-18 134.6 12.7 99 313-418 37-140 (263)
50 3hem_A Cyclopropane-fatty-acyl 99.5 8.7E-14 3E-18 137.2 14.7 131 309-446 66-242 (302)
51 4fsd_A Arsenic methyltransfera 99.5 7.4E-14 2.5E-18 143.4 14.4 121 320-445 86-249 (383)
52 2p35_A Trans-aconitate 2-methy 99.5 6.9E-14 2.4E-18 133.5 13.2 95 320-420 36-133 (259)
53 3gu3_A Methyltransferase; alph 99.5 7.8E-14 2.7E-18 136.7 13.7 132 309-448 16-191 (284)
54 3mgg_A Methyltransferase; NYSG 99.5 8.5E-14 2.9E-18 134.8 13.3 126 313-445 35-196 (276)
55 2i62_A Nicotinamide N-methyltr 99.5 1E-13 3.6E-18 132.5 13.7 146 319-466 58-264 (265)
56 3jwh_A HEN1; methyltransferase 99.5 1.1E-13 3.9E-18 129.4 13.4 136 307-447 21-192 (217)
57 3mti_A RRNA methylase; SAM-dep 99.5 3E-13 1E-17 123.3 15.7 141 313-457 20-179 (185)
58 2zfu_A Nucleomethylin, cerebra 99.5 2.9E-13 9.9E-18 126.2 15.6 134 306-463 58-191 (215)
59 3cc8_A Putative methyltransfer 99.5 2.9E-13 9.8E-18 126.1 15.3 123 319-447 34-185 (230)
60 1vlm_A SAM-dependent methyltra 99.5 1E-13 3.4E-18 130.3 12.2 118 320-447 50-188 (219)
61 3m70_A Tellurite resistance pr 99.5 2.3E-13 7.8E-18 132.8 15.2 129 309-445 114-258 (286)
62 2kw5_A SLR1183 protein; struct 99.5 3.4E-13 1.2E-17 124.4 15.5 138 320-464 32-196 (202)
63 2fk8_A Methoxy mycolic acid sy 99.5 2.1E-13 7.1E-18 135.2 15.0 127 312-446 87-253 (318)
64 3thr_A Glycine N-methyltransfe 99.5 7.9E-14 2.7E-18 136.1 10.1 110 306-419 48-175 (293)
65 1ri5_A MRNA capping enzyme; me 99.5 3.1E-13 1.1E-17 131.4 14.2 130 313-446 62-249 (298)
66 2avn_A Ubiquinone/menaquinone 99.5 2.5E-13 8.5E-18 131.1 12.5 98 320-421 57-154 (260)
67 4e2x_A TCAB9; kijanose, tetron 99.5 9.7E-14 3.3E-18 143.2 10.1 128 313-448 105-254 (416)
68 3q87_B N6 adenine specific DNA 99.5 1.6E-12 5.6E-17 118.2 16.1 130 314-456 22-158 (170)
69 2g72_A Phenylethanolamine N-me 99.5 5.7E-13 1.9E-17 130.5 14.0 127 320-448 74-257 (289)
70 2gs9_A Hypothetical protein TT 99.4 5.6E-13 1.9E-17 123.8 12.6 96 319-422 38-135 (211)
71 3g5t_A Trans-aconitate 3-methy 99.4 3.3E-13 1.1E-17 132.9 11.6 95 319-419 38-149 (299)
72 3g07_A 7SK snRNA methylphospha 99.4 2.3E-13 7.9E-18 134.4 10.4 127 319-447 48-269 (292)
73 1ve3_A Hypothetical protein PH 99.4 7.9E-13 2.7E-17 123.5 13.4 99 320-421 41-144 (227)
74 3bkx_A SAM-dependent methyltra 99.4 1.1E-12 3.6E-17 126.8 13.6 132 307-445 35-217 (275)
75 3m33_A Uncharacterized protein 99.4 6E-13 2E-17 125.9 11.6 117 313-445 46-165 (226)
76 2aot_A HMT, histamine N-methyl 99.4 8.5E-13 2.9E-17 129.8 12.4 125 319-446 54-220 (292)
77 2pxx_A Uncharacterized protein 99.4 5.1E-13 1.7E-17 123.3 10.2 105 314-422 41-162 (215)
78 1zx0_A Guanidinoacetate N-meth 99.4 6.1E-13 2.1E-17 126.6 10.1 125 320-446 63-211 (236)
79 3njr_A Precorrin-6Y methylase; 99.4 5.4E-12 1.8E-16 118.4 15.8 128 306-447 46-180 (204)
80 3grz_A L11 mtase, ribosomal pr 99.4 4.1E-12 1.4E-16 117.7 14.7 134 313-465 58-198 (205)
81 3iv6_A Putative Zn-dependent a 99.4 1.6E-12 5.6E-17 127.7 12.6 109 307-421 37-150 (261)
82 3ggd_A SAM-dependent methyltra 99.4 1.1E-12 3.6E-17 124.8 10.9 112 306-422 46-166 (245)
83 3e05_A Precorrin-6Y C5,15-meth 99.4 5.4E-12 1.8E-16 117.0 15.3 121 307-439 32-160 (204)
84 3dp7_A SAM-dependent methyltra 99.4 2.1E-12 7.2E-17 131.5 13.2 122 319-445 181-340 (363)
85 1x19_A CRTF-related protein; m 99.4 9.1E-12 3.1E-16 126.1 17.5 132 308-447 183-348 (359)
86 3eey_A Putative rRNA methylase 99.4 7.1E-12 2.4E-16 115.2 15.2 142 312-457 19-183 (197)
87 2r3s_A Uncharacterized protein 99.4 7.6E-12 2.6E-16 124.5 16.3 122 320-446 168-322 (335)
88 3hm2_A Precorrin-6Y C5,15-meth 99.4 5.7E-12 1.9E-16 113.2 13.9 126 308-447 18-153 (178)
89 1xdz_A Methyltransferase GIDB; 99.4 3.9E-12 1.3E-16 121.6 13.2 116 320-444 73-199 (240)
90 3evz_A Methyltransferase; NYSG 99.4 6.8E-12 2.3E-16 118.1 14.6 144 313-463 53-220 (230)
91 3lpm_A Putative methyltransfer 99.4 1.4E-11 4.9E-16 119.1 17.2 133 306-445 39-199 (259)
92 1ej0_A FTSJ; methyltransferase 99.4 2.9E-12 9.9E-17 113.6 11.3 139 313-463 20-180 (180)
93 2vdw_A Vaccinia virus capping 99.4 9.3E-13 3.2E-17 131.5 8.9 99 320-420 51-170 (302)
94 3i53_A O-methyltransferase; CO 99.4 5.9E-12 2E-16 126.0 14.3 122 319-446 171-320 (332)
95 1wzn_A SAM-dependent methyltra 99.3 3.9E-12 1.3E-16 121.2 12.0 98 319-419 43-145 (252)
96 1qzz_A RDMB, aclacinomycin-10- 99.3 5.7E-12 1.9E-16 127.7 13.6 131 309-447 176-339 (374)
97 3gwz_A MMCR; methyltransferase 99.3 1.3E-11 4.6E-16 125.8 16.1 122 319-446 204-355 (369)
98 3mcz_A O-methyltransferase; ad 99.3 1.5E-11 5.2E-16 123.7 15.9 137 319-465 181-351 (352)
99 1dus_A MJ0882; hypothetical pr 99.3 1.2E-11 4.1E-16 111.8 13.6 129 306-444 43-179 (194)
100 3dou_A Ribosomal RNA large sub 99.3 7.1E-12 2.4E-16 116.8 12.4 139 313-463 23-183 (191)
101 3reo_A (ISO)eugenol O-methyltr 99.3 9.4E-12 3.2E-16 127.1 14.0 123 318-447 204-355 (368)
102 2ipx_A RRNA 2'-O-methyltransfe 99.3 1.6E-11 5.4E-16 116.5 14.7 125 313-446 75-216 (233)
103 1yzh_A TRNA (guanine-N(7)-)-me 99.3 1.1E-11 3.8E-16 116.1 13.0 119 320-443 44-178 (214)
104 1fbn_A MJ fibrillarin homologu 99.3 2.9E-11 9.9E-16 114.8 15.6 124 313-447 72-213 (230)
105 1tw3_A COMT, carminomycin 4-O- 99.3 1.4E-11 4.9E-16 124.2 14.1 134 308-447 176-339 (360)
106 3p9c_A Caffeic acid O-methyltr 99.3 9.4E-12 3.2E-16 127.0 12.6 122 319-447 203-353 (364)
107 4df3_A Fibrillarin-like rRNA/T 99.3 1.8E-11 6E-16 118.5 13.8 161 291-461 51-232 (233)
108 1fp1_D Isoliquiritigenin 2'-O- 99.3 4.8E-12 1.6E-16 129.0 10.1 123 319-446 211-359 (372)
109 2plw_A Ribosomal RNA methyltra 99.3 2.6E-11 9E-16 111.5 14.1 134 313-459 20-194 (201)
110 2ip2_A Probable phenazine-spec 99.3 2.5E-11 8.4E-16 121.2 14.9 122 319-446 169-321 (334)
111 3lst_A CALO1 methyltransferase 99.3 1.8E-11 6.1E-16 123.7 13.9 131 309-446 178-335 (348)
112 2ld4_A Anamorsin; methyltransf 99.3 1.2E-11 4.2E-16 112.0 11.5 107 312-439 9-128 (176)
113 2fca_A TRNA (guanine-N(7)-)-me 99.3 1E-11 3.6E-16 117.0 11.4 118 320-442 41-174 (213)
114 3opn_A Putative hemolysin; str 99.3 2.3E-12 7.9E-17 124.0 6.8 145 293-449 15-186 (232)
115 3bgv_A MRNA CAP guanine-N7 met 99.3 7.1E-12 2.4E-16 124.2 10.3 99 320-421 37-157 (313)
116 3hp7_A Hemolysin, putative; st 99.3 1.5E-11 5.1E-16 122.7 12.6 146 293-449 63-234 (291)
117 1l3i_A Precorrin-6Y methyltran 99.3 2.4E-11 8.2E-16 109.6 12.2 121 306-439 24-152 (192)
118 3g89_A Ribosomal RNA small sub 99.3 1.7E-11 5.8E-16 118.9 11.8 118 319-445 82-210 (249)
119 2yxd_A Probable cobalt-precorr 99.3 4.5E-11 1.5E-15 107.2 13.7 120 306-441 26-151 (183)
120 1nt2_A Fibrillarin-like PRE-rR 99.3 1.3E-11 4.5E-16 116.5 10.6 124 313-447 55-195 (210)
121 3mq2_A 16S rRNA methyltransfer 99.3 2.5E-11 8.5E-16 113.5 12.1 130 310-447 22-184 (218)
122 3id6_C Fibrillarin-like rRNA/T 99.3 1.1E-10 3.8E-15 112.7 16.9 136 313-457 74-227 (232)
123 3p9n_A Possible methyltransfer 99.3 1.9E-11 6.5E-16 112.1 11.0 99 320-422 47-156 (189)
124 3uwp_A Histone-lysine N-methyl 99.3 7.9E-12 2.7E-16 130.1 8.6 111 307-425 165-294 (438)
125 3htx_A HEN1; HEN1, small RNA m 99.3 2.6E-11 9E-16 134.7 13.2 107 308-420 714-835 (950)
126 3orh_A Guanidinoacetate N-meth 99.3 4.4E-12 1.5E-16 121.6 6.2 121 314-441 59-204 (236)
127 2pwy_A TRNA (adenine-N(1)-)-me 99.2 2.3E-11 7.8E-16 116.1 11.1 122 307-442 88-219 (258)
128 2fyt_A Protein arginine N-meth 99.2 2.1E-11 7.3E-16 123.4 11.3 103 309-416 58-168 (340)
129 2nxc_A L11 mtase, ribosomal pr 99.2 4E-11 1.4E-15 116.2 12.7 121 313-446 118-243 (254)
130 3lbf_A Protein-L-isoaspartate 99.2 2.4E-11 8.3E-16 112.7 10.7 102 307-421 69-176 (210)
131 3q7e_A Protein arginine N-meth 99.2 1.7E-11 5.7E-16 124.5 9.5 99 314-417 65-171 (349)
132 3gdh_A Trimethylguanosine synt 99.2 1E-12 3.5E-17 124.8 0.4 126 312-445 75-217 (241)
133 1ixk_A Methyltransferase; open 99.2 8.2E-11 2.8E-15 117.9 14.3 135 305-443 108-271 (315)
134 1fp2_A Isoflavone O-methyltran 99.2 2.7E-11 9.2E-16 122.4 10.7 121 319-446 190-340 (352)
135 2b3t_A Protein methyltransfera 99.2 1.4E-10 4.7E-15 113.2 15.1 121 320-446 112-262 (276)
136 4a6d_A Hydroxyindole O-methylt 99.2 1.5E-10 5.2E-15 117.6 16.0 124 318-445 180-332 (353)
137 3fpf_A Mtnas, putative unchara 99.2 4E-11 1.4E-15 119.9 11.2 99 310-420 117-223 (298)
138 2frn_A Hypothetical protein PH 99.2 5.9E-11 2E-15 116.6 12.4 119 313-443 123-253 (278)
139 3dxy_A TRNA (guanine-N(7)-)-me 99.2 1.3E-11 4.6E-16 117.3 7.5 97 320-419 37-150 (218)
140 4dzr_A Protein-(glutamine-N5) 99.2 1.3E-11 4.5E-16 113.6 6.9 123 320-447 33-192 (215)
141 3u81_A Catechol O-methyltransf 99.2 5E-11 1.7E-15 112.3 10.8 123 305-437 48-186 (221)
142 1yb2_A Hypothetical protein TA 99.2 3.5E-11 1.2E-15 117.4 10.0 122 308-444 103-234 (275)
143 2qe6_A Uncharacterized protein 99.2 5.5E-11 1.9E-15 116.9 11.0 102 318-422 78-199 (274)
144 1vbf_A 231AA long hypothetical 99.2 5.8E-11 2E-15 111.7 10.4 102 307-421 62-167 (231)
145 3p2e_A 16S rRNA methylase; met 99.2 6.7E-11 2.3E-15 112.9 10.9 124 320-447 27-185 (225)
146 3r0q_C Probable protein argini 99.2 3.2E-11 1.1E-15 123.7 9.3 101 313-419 61-169 (376)
147 2esr_A Methyltransferase; stru 99.2 4.8E-11 1.6E-15 107.8 9.1 106 309-422 24-141 (177)
148 1g6q_1 HnRNP arginine N-methyl 99.2 5.7E-11 1.9E-15 119.5 10.4 102 311-417 34-143 (328)
149 3mb5_A SAM-dependent methyltra 99.2 8.8E-11 3E-15 112.3 11.0 123 306-443 84-218 (255)
150 2ift_A Putative methylase HI07 99.2 3.6E-11 1.2E-15 112.2 7.9 97 320-422 56-166 (201)
151 1af7_A Chemotaxis receptor met 99.2 5.9E-11 2E-15 117.3 9.8 96 319-417 107-250 (274)
152 2ozv_A Hypothetical protein AT 99.2 3.9E-10 1.3E-14 109.6 15.2 132 303-442 23-189 (260)
153 3ckk_A TRNA (guanine-N(7)-)-me 99.2 6.9E-11 2.3E-15 113.7 9.7 97 320-419 49-168 (235)
154 1zg3_A Isoflavanone 4'-O-methy 99.2 5.6E-11 1.9E-15 120.3 9.1 120 320-446 196-346 (358)
155 2nyu_A Putative ribosomal RNA 99.2 2.6E-10 8.8E-15 104.3 12.6 138 313-462 20-188 (196)
156 1i9g_A Hypothetical protein RV 99.2 1.4E-10 4.8E-15 112.4 11.4 122 307-442 91-225 (280)
157 3dmg_A Probable ribosomal RNA 99.1 1E-10 3.5E-15 120.6 10.9 99 320-420 236-341 (381)
158 2fhp_A Methylase, putative; al 99.1 1E-10 3.4E-15 105.9 9.0 101 314-422 43-157 (187)
159 1jsx_A Glucose-inhibited divis 99.1 2E-10 6.7E-15 106.2 10.9 109 320-443 68-184 (207)
160 4dcm_A Ribosomal RNA large sub 99.1 5.1E-10 1.7E-14 115.1 14.8 109 306-419 213-334 (375)
161 2y1w_A Histone-arginine methyl 99.1 1.6E-10 5.5E-15 117.2 10.6 103 309-418 44-154 (348)
162 3ntv_A MW1564 protein; rossman 99.1 1.3E-10 4.5E-15 110.6 9.3 108 306-423 62-180 (232)
163 2yxe_A Protein-L-isoaspartate 99.1 1.9E-10 6.6E-15 107.0 10.2 101 307-420 69-178 (215)
164 3tfw_A Putative O-methyltransf 99.1 2.3E-10 8E-15 110.2 10.8 108 306-423 54-174 (248)
165 3tr6_A O-methyltransferase; ce 99.1 3.1E-10 1E-14 106.4 11.2 108 306-423 55-178 (225)
166 3bwc_A Spermidine synthase; SA 99.1 2.4E-10 8.2E-15 114.0 10.9 124 319-445 97-238 (304)
167 3bzb_A Uncharacterized protein 99.1 7.5E-10 2.6E-14 108.8 14.3 124 314-444 78-234 (281)
168 1dl5_A Protein-L-isoaspartate 99.1 1.4E-10 4.8E-15 115.9 9.2 101 306-419 66-175 (317)
169 3ajd_A Putative methyltransfer 99.1 5.4E-10 1.8E-14 109.4 13.1 128 305-436 73-229 (274)
170 2pjd_A Ribosomal RNA small sub 99.1 3.8E-10 1.3E-14 114.0 12.1 110 306-421 187-305 (343)
171 2fpo_A Methylase YHHF; structu 99.1 1.1E-10 3.8E-15 108.9 7.6 96 320-421 57-162 (202)
172 1o54_A SAM-dependent O-methylt 99.1 3E-10 1E-14 110.7 10.8 122 307-443 104-235 (277)
173 2bm8_A Cephalosporin hydroxyla 99.1 8.4E-11 2.9E-15 113.0 6.7 122 306-437 72-207 (236)
174 2gpy_A O-methyltransferase; st 99.1 2E-10 6.7E-15 108.7 9.0 108 306-423 45-164 (233)
175 1ws6_A Methyltransferase; stru 99.1 9.4E-11 3.2E-15 104.3 6.3 97 320-423 44-151 (171)
176 2oxt_A Nucleoside-2'-O-methylt 99.1 7.4E-11 2.5E-15 115.9 6.0 100 313-421 72-187 (265)
177 3duw_A OMT, O-methyltransferas 99.1 6.5E-10 2.2E-14 104.2 12.1 108 306-423 49-171 (223)
178 1o9g_A RRNA methyltransferase; 99.1 6.3E-10 2.2E-14 106.6 11.9 99 319-419 53-214 (250)
179 2yvl_A TRMI protein, hypotheti 99.1 6.8E-10 2.3E-14 105.2 11.9 120 307-441 83-209 (248)
180 2wa2_A Non-structural protein 99.1 1.2E-10 4E-15 115.2 6.4 100 313-421 80-195 (276)
181 1i1n_A Protein-L-isoaspartate 99.1 2.3E-10 8E-15 107.4 8.0 96 313-421 75-184 (226)
182 3tma_A Methyltransferase; thum 99.1 2E-09 7E-14 108.9 15.3 131 307-447 195-339 (354)
183 3fzg_A 16S rRNA methylase; met 99.0 1.6E-10 5.4E-15 108.8 6.4 136 320-462 52-200 (200)
184 2igt_A SAM dependent methyltra 99.0 1.1E-09 3.8E-14 110.8 12.9 120 320-441 156-298 (332)
185 3c3p_A Methyltransferase; NP_9 99.0 3.4E-10 1.2E-14 105.4 8.4 105 307-422 48-163 (210)
186 2yxl_A PH0851 protein, 450AA l 99.0 3.2E-09 1.1E-13 111.4 16.4 155 305-463 249-449 (450)
187 2h00_A Methyltransferase 10 do 99.0 8.5E-10 2.9E-14 105.7 10.9 129 319-449 67-240 (254)
188 2pbf_A Protein-L-isoaspartate 99.0 3.5E-10 1.2E-14 106.3 7.6 96 312-420 77-194 (227)
189 1sqg_A SUN protein, FMU protei 99.0 3.1E-09 1.1E-13 110.7 15.5 154 306-463 237-429 (429)
190 1jg1_A PIMT;, protein-L-isoasp 99.0 6.1E-10 2.1E-14 105.8 9.1 101 307-421 83-191 (235)
191 2b25_A Hypothetical protein; s 99.0 1.6E-09 5.6E-14 108.6 12.6 102 307-420 97-220 (336)
192 3sso_A Methyltransferase; macr 99.0 2.1E-10 7.2E-15 119.0 6.1 94 319-421 218-326 (419)
193 1g8a_A Fibrillarin-like PRE-rR 99.0 4.1E-09 1.4E-13 99.0 14.5 97 313-418 71-177 (227)
194 1u2z_A Histone-lysine N-methyl 99.0 9.7E-10 3.3E-14 115.2 11.1 109 308-424 235-364 (433)
195 2p41_A Type II methyltransfera 99.0 3E-10 1E-14 113.7 6.6 125 313-443 80-214 (305)
196 3tm4_A TRNA (guanine N2-)-meth 99.0 2.9E-09 1E-13 109.0 13.6 143 307-464 210-366 (373)
197 2xyq_A Putative 2'-O-methyl tr 99.0 3.1E-09 1E-13 105.9 13.1 131 312-459 60-209 (290)
198 3lec_A NADB-rossmann superfami 99.0 1.6E-08 5.5E-13 97.6 17.7 140 306-457 11-158 (230)
199 2vdv_E TRNA (guanine-N(7)-)-me 99.0 9.4E-10 3.2E-14 105.4 9.1 97 320-419 52-173 (246)
200 4azs_A Methyltransferase WBDD; 99.0 3.7E-10 1.3E-14 121.9 6.8 100 320-422 69-176 (569)
201 3giw_A Protein of unknown func 99.0 1.2E-09 3.9E-14 108.2 9.5 104 317-423 78-204 (277)
202 3adn_A Spermidine synthase; am 99.0 1E-08 3.5E-13 102.1 16.4 120 319-442 85-222 (294)
203 3b3j_A Histone-arginine methyl 99.0 9.1E-10 3.1E-14 116.8 9.1 93 320-417 161-261 (480)
204 3gnl_A Uncharacterized protein 99.0 1.8E-08 6E-13 98.1 17.3 131 306-447 11-149 (244)
205 3dr5_A Putative O-methyltransf 99.0 6.3E-10 2.2E-14 105.9 6.8 95 320-422 59-166 (221)
206 3r3h_A O-methyltransferase, SA 99.0 2.6E-10 9E-15 109.9 4.2 108 306-423 51-174 (242)
207 3m4x_A NOL1/NOP2/SUN family pr 99.0 3.6E-09 1.2E-13 111.6 12.8 134 305-442 95-258 (456)
208 1ne2_A Hypothetical protein TA 98.9 4.3E-09 1.5E-13 97.0 11.8 107 320-438 54-162 (200)
209 1r18_A Protein-L-isoaspartate( 98.9 1.8E-09 6.3E-14 101.8 9.3 94 313-420 82-195 (227)
210 3a27_A TYW2, uncharacterized p 98.9 1.9E-09 6.4E-14 105.7 9.5 100 313-424 117-224 (272)
211 3m6w_A RRNA methylase; rRNA me 98.9 4.7E-09 1.6E-13 110.9 13.1 133 305-441 91-253 (464)
212 1sui_A Caffeoyl-COA O-methyltr 98.9 1.1E-09 3.8E-14 105.8 7.7 107 306-422 70-193 (247)
213 2hnk_A SAM-dependent O-methylt 98.9 1.2E-09 4.1E-14 104.0 7.7 107 306-422 51-184 (239)
214 3kr9_A SAM-dependent methyltra 98.9 3.2E-08 1.1E-12 95.1 17.6 139 307-458 6-153 (225)
215 1zq9_A Probable dimethyladenos 98.9 1.6E-09 5.4E-14 107.0 8.5 102 307-416 20-144 (285)
216 2qm3_A Predicted methyltransfe 98.9 8.2E-09 2.8E-13 105.5 14.0 114 320-441 175-303 (373)
217 3cbg_A O-methyltransferase; cy 98.9 2.4E-09 8E-14 102.0 8.8 106 308-423 65-186 (232)
218 2avd_A Catechol-O-methyltransf 98.9 1.6E-09 5.4E-14 101.7 7.5 107 306-422 60-182 (229)
219 1wy7_A Hypothetical protein PH 98.9 1.6E-08 5.6E-13 93.3 14.2 112 320-441 52-169 (207)
220 1uir_A Polyamine aminopropyltr 98.9 9.2E-09 3.1E-13 103.0 13.2 120 319-442 79-220 (314)
221 2frx_A Hypothetical protein YE 98.9 2.1E-08 7.2E-13 106.3 16.6 129 306-438 106-266 (479)
222 2o07_A Spermidine synthase; st 98.9 3.6E-09 1.2E-13 105.7 9.9 121 319-443 97-234 (304)
223 4hc4_A Protein arginine N-meth 98.9 6E-09 2.1E-13 107.4 10.4 97 315-417 83-187 (376)
224 1xj5_A Spermidine synthase 1; 98.9 1.3E-08 4.4E-13 103.2 12.6 98 319-418 122-234 (334)
225 2yx1_A Hypothetical protein MJ 98.9 1.2E-08 4E-13 103.1 12.3 116 314-447 194-317 (336)
226 2pt6_A Spermidine synthase; tr 98.9 7.3E-09 2.5E-13 104.2 10.6 120 319-442 118-254 (321)
227 2i7c_A Spermidine synthase; tr 98.9 1.4E-08 4.7E-13 100.2 12.3 121 319-443 80-217 (283)
228 2b2c_A Spermidine synthase; be 98.8 4.9E-09 1.7E-13 105.4 8.9 120 319-442 110-246 (314)
229 3gjy_A Spermidine synthase; AP 98.8 8.9E-09 3E-13 103.8 10.6 119 320-442 92-223 (317)
230 1iy9_A Spermidine synthase; ro 98.8 1.6E-08 5.4E-13 99.4 11.9 120 319-442 77-213 (275)
231 1mjf_A Spermidine synthase; sp 98.8 1.5E-08 5.3E-13 99.6 11.5 120 319-443 77-218 (281)
232 1inl_A Spermidine synthase; be 98.8 2.4E-08 8.4E-13 99.1 12.8 120 319-442 92-229 (296)
233 3evf_A RNA-directed RNA polyme 98.8 1.2E-08 4.1E-13 100.6 9.5 143 311-458 70-224 (277)
234 3c3y_A Pfomt, O-methyltransfer 98.8 7.7E-09 2.6E-13 98.9 8.1 107 306-422 61-184 (237)
235 2h1r_A Dimethyladenosine trans 98.8 2.3E-08 7.7E-13 99.5 10.5 100 307-414 34-154 (299)
236 2b78_A Hypothetical protein SM 98.7 3.2E-08 1.1E-12 101.9 10.6 126 314-444 211-359 (385)
237 1nv8_A HEMK protein; class I a 98.7 2.7E-08 9.1E-13 98.2 9.3 96 320-419 126-249 (284)
238 1uwv_A 23S rRNA (uracil-5-)-me 98.7 1.7E-07 5.8E-12 97.8 15.0 139 310-462 281-431 (433)
239 4dmg_A Putative uncharacterize 98.7 4.6E-08 1.6E-12 101.3 10.5 106 315-424 214-331 (393)
240 1qam_A ERMC' methyltransferase 98.7 3.8E-08 1.3E-12 94.9 9.1 76 312-393 27-107 (244)
241 2f8l_A Hypothetical protein LM 98.7 2.1E-07 7.2E-12 93.8 14.4 118 319-439 132-278 (344)
242 2as0_A Hypothetical protein PH 98.7 3.4E-08 1.2E-12 101.5 8.6 105 315-423 217-339 (396)
243 3k6r_A Putative transferase PH 98.7 5.7E-08 2E-12 96.2 9.7 117 313-441 123-251 (278)
244 2cmg_A Spermidine synthase; tr 98.7 2.3E-07 8E-12 90.7 13.9 88 319-419 74-171 (262)
245 3gru_A Dimethyladenosine trans 98.6 9.6E-08 3.3E-12 95.3 10.9 84 307-395 42-129 (295)
246 1wxx_A TT1595, hypothetical pr 98.6 4.1E-08 1.4E-12 100.6 8.3 102 320-423 212-329 (382)
247 1yub_A Ermam, rRNA methyltrans 98.6 1.8E-09 6.1E-14 103.8 -1.8 106 306-418 20-144 (245)
248 3c0k_A UPF0064 protein YCCW; P 98.6 5.6E-08 1.9E-12 100.0 9.2 122 314-439 219-362 (396)
249 3v97_A Ribosomal RNA large sub 98.6 6.6E-08 2.3E-12 107.0 10.1 121 313-440 537-675 (703)
250 2ih2_A Modification methylase 98.6 1.1E-07 3.7E-12 97.5 10.5 125 307-439 31-186 (421)
251 3frh_A 16S rRNA methylase; met 98.6 4.5E-07 1.5E-11 88.2 13.1 132 309-449 99-239 (253)
252 2jjq_A Uncharacterized RNA met 98.6 1.3E-07 4.4E-12 98.8 9.9 100 307-418 282-386 (425)
253 3gcz_A Polyprotein; flavivirus 98.5 1.5E-07 5.1E-12 92.9 6.3 142 312-458 87-241 (282)
254 3tqs_A Ribosomal RNA small sub 98.4 6.9E-07 2.4E-11 87.1 10.3 78 307-389 21-106 (255)
255 3lcv_B Sisomicin-gentamicin re 98.4 8.8E-07 3E-11 87.1 9.1 97 318-419 133-236 (281)
256 3fut_A Dimethyladenosine trans 98.3 1.4E-06 4.9E-11 85.7 9.9 83 307-395 39-125 (271)
257 2qfm_A Spermine synthase; sper 98.3 1.8E-06 6.2E-11 88.4 11.0 124 318-444 189-339 (364)
258 3k0b_A Predicted N6-adenine-sp 98.3 1.4E-06 4.7E-11 90.1 10.1 109 307-420 193-351 (393)
259 2okc_A Type I restriction enzy 98.3 9.7E-07 3.3E-11 92.3 8.6 110 306-420 162-308 (445)
260 3ldg_A Putative uncharacterize 98.3 3E-06 1E-10 87.4 11.0 109 307-420 186-344 (384)
261 3bt7_A TRNA (uracil-5-)-methyl 98.3 9.3E-07 3.2E-11 90.2 7.1 90 320-420 216-327 (369)
262 3ldu_A Putative methylase; str 98.3 1.8E-06 6.3E-11 88.9 9.3 106 310-420 190-345 (385)
263 2b9e_A NOL1/NOP2/SUN domain fa 98.2 8.1E-06 2.8E-10 81.7 13.3 128 305-437 92-253 (309)
264 3eld_A Methyltransferase; flav 98.2 4.8E-06 1.7E-10 82.7 9.9 141 313-458 79-231 (300)
265 4auk_A Ribosomal RNA large sub 98.2 2.8E-05 9.6E-10 79.8 15.8 141 313-465 209-357 (375)
266 3ftd_A Dimethyladenosine trans 98.2 6.7E-06 2.3E-10 79.7 10.3 82 307-393 23-108 (249)
267 3uzu_A Ribosomal RNA small sub 98.1 3.7E-06 1.3E-10 83.1 8.0 79 307-389 34-124 (279)
268 2r6z_A UPF0341 protein in RSP 98.1 3.4E-06 1.2E-10 82.2 6.8 80 307-390 75-172 (258)
269 2efj_A 3,7-dimethylxanthine me 98.0 2.5E-05 8.6E-10 80.6 12.2 105 319-424 54-230 (384)
270 2px2_A Genome polyprotein [con 98.0 7.8E-06 2.7E-10 79.8 7.5 139 313-458 71-223 (269)
271 1m6e_X S-adenosyl-L-methionnin 98.0 3.5E-05 1.2E-09 78.8 11.9 105 319-424 53-214 (359)
272 3b5i_A S-adenosyl-L-methionine 98.0 1.8E-05 6E-10 81.5 9.4 53 370-423 141-229 (374)
273 2oyr_A UPF0341 protein YHIQ; a 97.9 1.3E-05 4.4E-10 78.4 7.3 103 305-413 76-194 (258)
274 1m6y_A S-adenosyl-methyltransf 97.9 9.6E-06 3.3E-10 81.0 6.4 79 307-389 18-108 (301)
275 2ar0_A M.ecoki, type I restric 97.9 2.4E-05 8.2E-10 84.0 9.4 112 306-421 160-314 (541)
276 2dul_A N(2),N(2)-dimethylguano 97.9 9.2E-06 3.2E-10 83.5 5.8 91 320-419 50-164 (378)
277 1qyr_A KSGA, high level kasuga 97.9 1.7E-05 5.7E-10 77.1 6.8 77 307-389 13-100 (252)
278 3v97_A Ribosomal RNA large sub 97.9 3.7E-05 1.3E-09 85.1 10.1 109 307-419 182-347 (703)
279 3axs_A Probable N(2),N(2)-dime 97.8 2.8E-05 9.6E-10 80.4 7.3 91 320-419 55-158 (392)
280 4gqb_A Protein arginine N-meth 97.8 6.2E-05 2.1E-09 82.3 10.2 93 319-415 359-463 (637)
281 3ua3_A Protein arginine N-meth 97.8 4.3E-05 1.5E-09 84.0 8.3 95 319-416 411-531 (745)
282 2qy6_A UPF0209 protein YFCK; s 97.7 8.8E-05 3E-09 72.3 8.7 117 319-442 62-230 (257)
283 3ll7_A Putative methyltransfer 97.7 4.2E-05 1.4E-09 79.6 6.0 67 320-388 96-172 (410)
284 4fzv_A Putative methyltransfer 97.6 0.00046 1.6E-08 70.5 13.0 129 303-435 136-301 (359)
285 3o4f_A Spermidine synthase; am 97.6 0.00062 2.1E-08 67.8 13.0 118 318-442 84-222 (294)
286 3cvo_A Methyltransferase-like 97.5 0.00047 1.6E-08 65.0 10.8 90 319-420 32-155 (202)
287 3khk_A Type I restriction-modi 97.5 0.00015 5.3E-09 77.9 8.2 126 307-437 237-417 (544)
288 3lkz_A Non-structural protein 97.5 0.00017 5.7E-09 71.7 7.5 122 311-436 90-221 (321)
289 3p8z_A Mtase, non-structural p 97.4 0.00029 1E-08 68.0 7.9 120 312-436 75-203 (267)
290 3lkd_A Type I restriction-modi 97.4 0.00039 1.3E-08 74.7 9.7 116 320-437 224-379 (542)
291 2k4m_A TR8_protein, UPF0146 pr 97.3 0.00076 2.6E-08 60.7 9.0 84 320-422 38-124 (153)
292 3r24_A NSP16, 2'-O-methyl tran 97.3 0.0022 7.4E-08 63.9 12.1 135 314-463 108-259 (344)
293 3s1s_A Restriction endonucleas 97.3 0.00099 3.4E-08 74.4 10.8 100 320-421 324-467 (878)
294 2wk1_A NOVP; transferase, O-me 97.0 0.0031 1E-07 62.3 10.6 115 320-439 109-264 (282)
295 1wg8_A Predicted S-adenosylmet 96.8 0.0032 1.1E-07 62.3 8.4 77 306-386 13-96 (285)
296 3c6k_A Spermine synthase; sper 96.7 0.0062 2.1E-07 62.6 10.6 122 318-442 206-354 (381)
297 3ufb_A Type I restriction-modi 95.9 0.05 1.7E-06 58.1 12.5 111 306-420 208-363 (530)
298 2zig_A TTHA0409, putative modi 95.7 0.015 5.2E-07 57.1 6.6 43 314-360 234-276 (297)
299 1rjd_A PPM1P, carboxy methyl t 95.4 0.15 5.1E-06 51.2 12.8 104 318-423 98-236 (334)
300 1f8f_A Benzyl alcohol dehydrog 95.2 0.054 1.9E-06 54.3 8.9 97 311-420 186-290 (371)
301 1g55_A DNA cytosine methyltran 95.0 0.15 5E-06 51.3 11.5 136 320-460 4-168 (343)
302 3vyw_A MNMC2; tRNA wobble urid 94.3 0.37 1.3E-05 48.1 12.1 88 363-463 168-262 (308)
303 3two_A Mannitol dehydrogenase; 94.2 0.086 2.9E-06 52.4 7.5 93 311-420 172-266 (348)
304 3g7u_A Cytosine-specific methy 94.1 0.73 2.5E-05 46.9 14.4 138 320-459 4-170 (376)
305 4ej6_A Putative zinc-binding d 94.1 0.18 6E-06 50.8 9.6 99 309-420 176-285 (370)
306 1pqw_A Polyketide synthase; ro 94.1 0.11 3.8E-06 47.0 7.4 95 311-419 34-137 (198)
307 1pl8_A Human sorbitol dehydrog 94.1 0.2 6.8E-06 50.0 9.8 98 309-419 165-273 (356)
308 3fpc_A NADP-dependent alcohol 94.0 0.16 5.4E-06 50.6 9.0 98 309-419 160-266 (352)
309 1e3j_A NADP(H)-dependent ketos 94.0 0.29 9.8E-06 48.6 10.8 98 309-419 162-271 (352)
310 3s2e_A Zinc-containing alcohol 94.0 0.18 6.1E-06 49.8 9.2 98 309-419 160-263 (340)
311 2dph_A Formaldehyde dismutase; 93.7 0.17 5.7E-06 51.4 8.7 103 309-419 179-299 (398)
312 1p0f_A NADP-dependent alcohol 92.8 0.43 1.5E-05 47.7 9.9 96 311-419 187-293 (373)
313 3gms_A Putative NADPH:quinone 92.7 0.25 8.4E-06 48.9 7.9 97 310-420 139-244 (340)
314 3tka_A Ribosomal RNA small sub 92.7 0.15 5.1E-06 51.6 6.2 80 306-389 48-138 (347)
315 3uko_A Alcohol dehydrogenase c 92.6 0.35 1.2E-05 48.5 9.0 98 310-420 188-296 (378)
316 2c7p_A Modification methylase 92.6 1.6 5.6E-05 43.4 13.7 136 320-460 13-172 (327)
317 2jhf_A Alcohol dehydrogenase E 92.5 0.46 1.6E-05 47.5 9.8 96 311-419 187-293 (374)
318 1cdo_A Alcohol dehydrogenase; 92.5 0.43 1.5E-05 47.8 9.5 96 311-419 188-294 (374)
319 2fzw_A Alcohol dehydrogenase c 92.5 0.48 1.6E-05 47.3 9.8 96 311-419 186-292 (373)
320 3uog_A Alcohol dehydrogenase; 92.4 0.23 7.7E-06 49.7 7.2 97 310-420 184-288 (363)
321 3qv2_A 5-cytosine DNA methyltr 92.1 2.1 7E-05 42.8 13.7 134 320-459 12-178 (327)
322 4b7c_A Probable oxidoreductase 92.0 0.37 1.3E-05 47.4 8.2 97 309-419 143-248 (336)
323 1uuf_A YAHK, zinc-type alcohol 92.0 0.24 8.1E-06 49.9 6.8 95 311-418 190-287 (369)
324 1i4w_A Mitochondrial replicati 91.9 0.25 8.6E-06 50.1 6.9 53 320-374 61-118 (353)
325 3ubt_Y Modification methylase 91.9 3.3 0.00011 40.4 14.9 138 320-460 2-162 (331)
326 2vz8_A Fatty acid synthase; tr 91.9 0.05 1.7E-06 68.0 2.0 95 320-419 1243-1348(2512)
327 1g60_A Adenine-specific methyl 91.8 0.21 7E-06 47.9 5.9 43 314-360 211-253 (260)
328 1e3i_A Alcohol dehydrogenase, 91.8 0.56 1.9E-05 46.9 9.3 96 311-419 191-297 (376)
329 1v3u_A Leukotriene B4 12- hydr 91.6 0.38 1.3E-05 47.2 7.7 95 311-419 141-244 (333)
330 3jyn_A Quinone oxidoreductase; 91.3 0.4 1.4E-05 47.0 7.5 96 311-420 136-240 (325)
331 2c0c_A Zinc binding alcohol de 91.1 0.77 2.6E-05 45.8 9.4 98 309-420 157-262 (362)
332 1rjw_A ADH-HT, alcohol dehydro 91.0 0.83 2.9E-05 45.0 9.5 94 312-418 161-260 (339)
333 2d8a_A PH0655, probable L-thre 90.8 0.59 2E-05 46.2 8.3 95 311-419 164-267 (348)
334 3jv7_A ADH-A; dehydrogenase, n 90.7 0.64 2.2E-05 45.9 8.4 94 312-419 168-270 (345)
335 2zig_A TTHA0409, putative modi 90.7 0.27 9.4E-06 48.0 5.6 83 363-445 22-137 (297)
336 1kol_A Formaldehyde dehydrogen 90.6 1.1 3.7E-05 45.2 10.2 102 310-419 180-300 (398)
337 3qwb_A Probable quinone oxidor 90.5 0.5 1.7E-05 46.4 7.4 93 312-418 145-246 (334)
338 1jvb_A NAD(H)-dependent alcoho 90.4 0.77 2.6E-05 45.4 8.7 96 311-419 166-271 (347)
339 3goh_A Alcohol dehydrogenase, 90.4 0.25 8.6E-06 48.2 5.0 91 309-418 136-228 (315)
340 2hcy_A Alcohol dehydrogenase 1 90.3 0.66 2.3E-05 45.9 8.1 95 312-419 166-269 (347)
341 4eye_A Probable oxidoreductase 90.0 0.52 1.8E-05 46.6 7.0 94 311-419 155-257 (342)
342 3m6i_A L-arabinitol 4-dehydrog 89.7 1.7 5.9E-05 43.0 10.6 99 309-420 173-284 (363)
343 4h0n_A DNMT2; SAH binding, tra 89.7 5.3 0.00018 39.8 14.1 137 320-460 5-168 (333)
344 1yb5_A Quinone oxidoreductase; 89.3 0.87 3E-05 45.3 8.1 95 311-419 166-269 (351)
345 3ip1_A Alcohol dehydrogenase, 89.1 1.6 5.4E-05 44.2 10.0 100 312-419 210-318 (404)
346 2eih_A Alcohol dehydrogenase; 89.1 0.8 2.7E-05 45.2 7.6 94 312-419 163-265 (343)
347 1vj0_A Alcohol dehydrogenase, 89.0 0.72 2.5E-05 46.4 7.3 97 311-420 190-299 (380)
348 2b5w_A Glucose dehydrogenase; 88.9 1.2 4.1E-05 44.2 8.8 98 310-420 161-274 (357)
349 2j3h_A NADP-dependent oxidored 88.9 0.97 3.3E-05 44.4 8.0 95 311-419 151-255 (345)
350 2h6e_A ADH-4, D-arabinose 1-de 88.9 0.89 3E-05 44.9 7.7 94 312-419 168-269 (344)
351 1qor_A Quinone oxidoreductase; 88.3 0.92 3.1E-05 44.3 7.4 95 311-419 136-239 (327)
352 4eez_A Alcohol dehydrogenase 1 88.0 2.9 9.8E-05 41.0 10.8 97 310-419 158-263 (348)
353 3tqh_A Quinone oxidoreductase; 87.8 1.9 6.6E-05 42.0 9.3 95 309-418 146-244 (321)
354 1boo_A Protein (N-4 cytosine-s 87.7 0.6 2.1E-05 46.3 5.6 84 363-446 15-122 (323)
355 4dvj_A Putative zinc-dependent 87.7 1.6 5.5E-05 43.5 8.8 90 315-418 171-269 (363)
356 2uyo_A Hypothetical protein ML 87.6 2.6 8.7E-05 41.7 10.1 100 318-422 103-221 (310)
357 2hwk_A Helicase NSP2; rossman 87.6 1.4 4.8E-05 43.5 7.9 95 364-460 191-296 (320)
358 2oo3_A Protein involved in cat 87.5 1.4 4.9E-05 43.3 8.0 115 320-439 94-218 (283)
359 3krt_A Crotonyl COA reductase; 87.2 1.3 4.5E-05 45.6 8.1 93 312-418 225-343 (456)
360 1piw_A Hypothetical zinc-type 87.1 0.68 2.3E-05 46.1 5.7 96 311-418 175-275 (360)
361 1iz0_A Quinone oxidoreductase; 86.8 0.49 1.7E-05 45.8 4.3 91 313-418 123-217 (302)
362 4dup_A Quinone oxidoreductase; 86.7 1 3.6E-05 44.6 6.7 95 311-419 163-265 (353)
363 4a2c_A Galactitol-1-phosphate 86.7 4.8 0.00016 39.3 11.5 99 309-420 154-261 (346)
364 1wly_A CAAR, 2-haloacrylate re 86.3 1.5 5.3E-05 42.8 7.7 95 311-419 141-244 (333)
365 2j8z_A Quinone oxidoreductase; 86.1 1.3 4.6E-05 43.9 7.2 96 311-420 158-262 (354)
366 3gqv_A Enoyl reductase; medium 85.9 3.1 0.00011 41.5 9.8 92 314-419 163-263 (371)
367 2zb4_A Prostaglandin reductase 85.6 2.1 7.2E-05 42.3 8.3 97 309-419 152-260 (357)
368 3fwz_A Inner membrane protein 85.2 3.2 0.00011 35.3 8.3 107 320-441 9-121 (140)
369 2dq4_A L-threonine 3-dehydroge 85.0 0.93 3.2E-05 44.7 5.3 93 310-418 160-261 (343)
370 4a0s_A Octenoyl-COA reductase/ 84.8 2.4 8.1E-05 43.4 8.5 95 311-419 216-336 (447)
371 3gaz_A Alcohol dehydrogenase s 84.2 1.6 5.4E-05 43.1 6.6 91 311-418 146-245 (343)
372 3fbg_A Putative arginate lyase 83.8 2.4 8.2E-05 41.8 7.8 89 315-417 150-246 (346)
373 3pvc_A TRNA 5-methylaminomethy 83.5 3.9 0.00013 44.4 9.9 72 363-445 150-231 (689)
374 3ps9_A TRNA 5-methylaminomethy 83.1 6.9 0.00024 42.2 11.6 61 377-444 177-238 (676)
375 3nx4_A Putative oxidoreductase 83.0 2.3 8E-05 41.2 7.2 88 320-419 149-241 (324)
376 3tos_A CALS11; methyltransfera 82.7 20 0.0007 34.4 13.6 98 320-422 72-220 (257)
377 2cdc_A Glucose dehydrogenase g 82.3 2 7E-05 42.7 6.6 89 316-420 181-279 (366)
378 1xa0_A Putative NADPH dependen 79.4 2 7E-05 41.8 5.3 88 320-419 152-246 (328)
379 1tt7_A YHFP; alcohol dehydroge 79.2 3.4 0.00012 40.2 6.9 88 320-419 153-247 (330)
380 2cf5_A Atccad5, CAD, cinnamyl 79.1 2.2 7.6E-05 42.3 5.5 96 311-419 175-275 (357)
381 1zsy_A Mitochondrial 2-enoyl t 78.2 12 0.00041 36.8 10.7 96 311-418 163-269 (357)
382 2vn8_A Reticulon-4-interacting 76.9 5.1 0.00017 39.9 7.5 94 313-419 181-280 (375)
383 1yqd_A Sinapyl alcohol dehydro 76.5 2.5 8.6E-05 42.1 5.1 96 311-419 182-282 (366)
384 4dcm_A Ribosomal RNA large sub 75.0 8.2 0.00028 38.9 8.5 122 303-437 25-152 (375)
385 1g60_A Adenine-specific methyl 75.0 4.5 0.00015 38.4 6.2 76 364-442 6-94 (260)
386 1gu7_A Enoyl-[acyl-carrier-pro 74.5 6.5 0.00022 38.7 7.5 96 312-419 163-275 (364)
387 3iei_A Leucine carboxyl methyl 73.5 40 0.0014 33.5 13.0 114 305-423 79-233 (334)
388 3ius_A Uncharacterized conserv 73.0 29 0.001 32.1 11.4 65 319-390 6-74 (286)
389 2qrv_A DNA (cytosine-5)-methyl 73.0 5.1 0.00017 39.3 6.2 69 319-387 17-91 (295)
390 3ggo_A Prephenate dehydrogenas 72.6 26 0.00088 34.2 11.2 87 319-415 34-124 (314)
391 1boo_A Protein (N-4 cytosine-s 71.8 6.1 0.00021 38.9 6.5 44 313-360 250-293 (323)
392 1eg2_A Modification methylase 71.3 10 0.00035 37.4 8.0 84 363-446 39-142 (319)
393 3pi7_A NADH oxidoreductase; gr 70.6 4.9 0.00017 39.5 5.5 88 320-419 167-263 (349)
394 2py6_A Methyltransferase FKBM; 70.4 4.9 0.00017 41.0 5.6 41 312-356 223-267 (409)
395 3me5_A Cytosine-specific methy 69.9 30 0.001 36.2 11.6 55 319-374 89-147 (482)
396 4a27_A Synaptic vesicle membra 69.8 7 0.00024 38.4 6.5 93 310-419 137-238 (349)
397 3trk_A Nonstructural polyprote 69.3 8.7 0.0003 37.6 6.6 84 372-457 204-298 (324)
398 3dmg_A Probable ribosomal RNA 68.5 11 0.00039 38.0 7.8 106 320-435 48-153 (381)
399 3llv_A Exopolyphosphatase-rela 68.3 31 0.001 28.6 9.4 105 320-440 8-118 (141)
400 4hp8_A 2-deoxy-D-gluconate 3-d 66.6 17 0.00059 34.6 8.2 70 320-389 11-89 (247)
401 3swr_A DNA (cytosine-5)-methyl 65.4 73 0.0025 36.5 14.3 139 319-459 541-720 (1002)
402 2f1k_A Prephenate dehydrogenas 65.0 44 0.0015 31.2 10.8 84 320-415 2-87 (279)
403 3l4b_C TRKA K+ channel protien 64.8 27 0.00093 31.5 9.0 90 320-417 2-97 (218)
404 3l9w_A Glutathione-regulated p 64.1 21 0.0007 36.5 8.8 89 320-417 6-100 (413)
405 4gua_A Non-structural polyprot 62.0 19 0.00067 38.6 8.1 83 373-458 216-309 (670)
406 2zwa_A Leucine carboxyl methyl 59.4 51 0.0017 35.6 11.3 116 304-422 93-257 (695)
407 1eg2_A Modification methylase 57.6 10 0.00034 37.5 4.9 43 314-360 241-286 (319)
408 3c85_A Putative glutathione-re 57.3 88 0.003 27.1 10.7 107 320-441 41-155 (183)
409 3v2g_A 3-oxoacyl-[acyl-carrier 56.2 64 0.0022 30.2 10.2 101 319-419 32-165 (271)
410 1h2b_A Alcohol dehydrogenase; 55.8 31 0.0011 33.9 8.2 94 311-419 182-285 (359)
411 2g5c_A Prephenate dehydrogenas 55.4 82 0.0028 29.4 10.8 87 320-417 3-94 (281)
412 4eso_A Putative oxidoreductase 53.4 40 0.0014 31.2 8.2 99 319-419 9-138 (255)
413 3slk_A Polyketide synthase ext 52.9 10 0.00035 42.2 4.5 92 312-419 342-442 (795)
414 3av4_A DNA (cytosine-5)-methyl 51.1 2.4E+02 0.0082 33.3 15.6 136 320-459 853-1031(1330)
415 3hn7_A UDP-N-acetylmuramate-L- 50.8 57 0.002 34.1 9.7 66 320-389 21-90 (524)
416 2km1_A Protein DRE2; yeast, an 49.9 8.2 0.00028 33.8 2.4 43 374-417 54-96 (136)
417 3eag_A UDP-N-acetylmuramate:L- 48.1 50 0.0017 32.1 8.2 69 319-389 5-76 (326)
418 1id1_A Putative potassium chan 46.8 72 0.0025 26.8 8.1 91 320-417 5-103 (153)
419 4ft4_B DNA (cytosine-5)-methyl 45.2 1.7E+02 0.0059 31.9 12.8 41 319-360 213-259 (784)
420 4dkj_A Cytosine-specific methy 45.2 1.4E+02 0.0049 30.3 11.3 37 320-358 12-55 (403)
421 3k6j_A Protein F01G10.3, confi 44.6 1.8E+02 0.0062 30.1 12.2 96 314-417 50-164 (460)
422 3g0o_A 3-hydroxyisobutyrate de 44.3 92 0.0032 29.6 9.3 87 320-417 9-100 (303)
423 3dfz_A SIRC, precorrin-2 dehyd 43.6 93 0.0032 29.0 8.9 66 320-388 33-100 (223)
424 3oig_A Enoyl-[acyl-carrier-pro 43.4 1.5E+02 0.0053 27.0 10.6 101 319-419 8-147 (266)
425 3o26_A Salutaridine reductase; 42.5 98 0.0034 28.7 9.1 71 319-389 13-101 (311)
426 3pxx_A Carveol dehydrogenase; 41.5 1.2E+02 0.0042 28.0 9.6 101 319-419 11-153 (287)
427 2pd4_A Enoyl-[acyl-carrier-pro 41.0 1.2E+02 0.0042 28.0 9.5 70 320-389 8-94 (275)
428 3ek2_A Enoyl-(acyl-carrier-pro 41.0 1.2E+02 0.004 27.7 9.2 101 319-419 15-153 (271)
429 3k31_A Enoyl-(acyl-carrier-pro 40.8 1.5E+02 0.0053 27.8 10.3 101 319-419 31-168 (296)
430 3c24_A Putative oxidoreductase 40.0 1.6E+02 0.0054 27.6 10.2 83 320-416 13-98 (286)
431 1m46_B IQ4, IQ4 motif from MYO 39.9 29 0.001 21.1 3.0 18 75-92 2-19 (26)
432 3eff_K Voltage-gated potassium 39.3 14 0.00047 31.7 2.2 35 6-40 61-95 (139)
433 3r3s_A Oxidoreductase; structu 39.1 95 0.0033 29.3 8.5 100 320-419 51-185 (294)
434 4e12_A Diketoreductase; oxidor 38.9 73 0.0025 30.1 7.6 88 319-416 5-118 (283)
435 1g0o_A Trihydroxynaphthalene r 38.6 1.2E+02 0.0041 28.2 9.0 100 320-419 31-163 (283)
436 1qsg_A Enoyl-[acyl-carrier-pro 38.6 1.5E+02 0.0051 27.2 9.6 70 320-389 11-97 (265)
437 1lnq_A MTHK channels, potassiu 38.4 1.2E+02 0.0043 29.0 9.3 85 320-417 117-209 (336)
438 3b1f_A Putative prephenate deh 38.4 2E+02 0.0069 26.7 10.6 86 320-416 8-98 (290)
439 2a4k_A 3-oxoacyl-[acyl carrier 38.4 1.3E+02 0.0045 27.8 9.2 68 320-389 8-90 (263)
440 1zcj_A Peroxisomal bifunctiona 38.3 1.6E+02 0.0053 30.2 10.5 90 318-417 37-148 (463)
441 3grk_A Enoyl-(acyl-carrier-pro 37.7 1.3E+02 0.0046 28.3 9.3 98 320-419 33-169 (293)
442 3ijr_A Oxidoreductase, short c 37.2 1.5E+02 0.005 27.9 9.4 100 320-419 49-182 (291)
443 3is3_A 17BETA-hydroxysteroid d 36.6 1.4E+02 0.0046 27.7 9.0 102 319-420 19-153 (270)
444 1lss_A TRK system potassium up 36.2 1.6E+02 0.0056 23.4 12.3 106 320-440 6-117 (140)
445 1bg6_A N-(1-D-carboxylethyl)-L 36.0 1.1E+02 0.0037 29.4 8.5 90 320-417 6-107 (359)
446 2vz8_A Fatty acid synthase; tr 36.0 54 0.0018 41.3 7.5 93 312-418 1664-1769(2512)
447 3u5t_A 3-oxoacyl-[acyl-carrier 35.9 1.1E+02 0.0037 28.5 8.2 100 320-419 29-161 (267)
448 2aef_A Calcium-gated potassium 35.6 1E+02 0.0035 27.9 7.7 85 320-417 11-103 (234)
449 2lw9_A Unconventionnal myosin- 34.7 77 0.0026 22.8 5.0 39 70-116 3-44 (51)
450 2hmt_A YUAA protein; RCK, KTN, 34.7 1.6E+02 0.0053 23.7 8.1 106 320-440 8-119 (144)
451 3pjs_K KCSA, voltage-gated pot 33.5 12 0.00042 33.2 0.9 36 6-41 88-123 (166)
452 4had_A Probable oxidoreductase 32.9 66 0.0023 31.1 6.3 66 320-387 25-94 (350)
453 3ond_A Adenosylhomocysteinase; 32.9 1.6E+02 0.0054 30.9 9.4 82 320-418 267-351 (488)
454 4hv4_A UDP-N-acetylmuramate--L 32.6 96 0.0033 32.1 7.8 67 318-389 22-91 (494)
455 4da9_A Short-chain dehydrogena 32.3 95 0.0032 29.1 7.2 71 319-389 30-117 (280)
456 1wma_A Carbonyl reductase [NAD 32.2 99 0.0034 28.0 7.1 101 319-419 5-138 (276)
457 2ew2_A 2-dehydropantoate 2-red 31.1 2.4E+02 0.0081 26.2 9.8 89 320-417 5-106 (316)
458 3ew7_A LMO0794 protein; Q8Y8U8 31.1 2E+02 0.0069 24.8 8.8 65 320-389 2-71 (221)
459 3iup_A Putative NADPH:quinone 30.9 36 0.0012 33.7 4.1 71 314-388 169-249 (379)
460 3mog_A Probable 3-hydroxybutyr 30.7 2.3E+02 0.0078 29.3 10.3 88 320-417 7-118 (483)
461 1wg8_A Predicted S-adenosylmet 30.5 23 0.0008 34.6 2.5 39 396-436 210-248 (285)
462 2pd6_A Estradiol 17-beta-dehyd 30.3 1.4E+02 0.0048 27.0 7.8 68 320-389 9-102 (264)
463 3qha_A Putative oxidoreductase 30.2 1.1E+02 0.0037 29.1 7.2 85 320-417 17-103 (296)
464 3e8x_A Putative NAD-dependent 30.2 2.9E+02 0.0099 24.4 11.1 68 320-390 23-95 (236)
465 4e21_A 6-phosphogluconate dehy 29.9 1.1E+02 0.0037 30.4 7.3 87 320-416 24-112 (358)
466 1zkd_A DUF185; NESG, RPR58, st 29.8 1.6E+02 0.0055 29.8 8.7 36 320-357 83-127 (387)
467 4a7p_A UDP-glucose dehydrogena 29.4 95 0.0032 32.0 7.0 111 320-437 10-146 (446)
468 3h2s_A Putative NADH-flavin re 29.3 2.8E+02 0.0097 24.0 9.8 94 320-418 2-103 (224)
469 3tka_A Ribosomal RNA small sub 29.2 25 0.00086 35.4 2.5 30 396-425 251-280 (347)
470 2eez_A Alanine dehydrogenase; 29.1 52 0.0018 32.6 4.9 95 319-418 167-265 (369)
471 2vhw_A Alanine dehydrogenase; 29.1 42 0.0014 33.5 4.2 94 320-418 170-267 (377)
472 2cvz_A Dehydrogenase, 3-hydrox 28.4 1.6E+02 0.0055 27.2 8.0 84 320-417 3-88 (289)
473 2dpo_A L-gulonate 3-dehydrogen 28.3 2.3E+02 0.008 27.5 9.4 89 319-416 7-120 (319)
474 2wyu_A Enoyl-[acyl carrier pro 27.9 1.5E+02 0.0053 27.1 7.7 70 320-389 10-96 (261)
475 2p91_A Enoyl-[acyl-carrier-pro 27.9 3.6E+02 0.012 24.9 10.4 70 320-389 23-109 (285)
476 3u3x_A Oxidoreductase; structu 27.5 2.3E+02 0.0078 27.6 9.3 65 320-387 28-96 (361)
477 2h7i_A Enoyl-[acyl-carrier-pro 27.4 1.4E+02 0.0049 27.4 7.4 100 320-420 9-149 (269)
478 1pjc_A Protein (L-alanine dehy 27.4 28 0.00096 34.6 2.5 95 319-418 168-266 (361)
479 2g1u_A Hypothetical protein TM 26.5 2.2E+02 0.0077 23.7 8.0 89 320-417 21-116 (155)
480 1ja9_A 4HNR, 1,3,6,8-tetrahydr 25.9 1.5E+02 0.005 27.0 7.1 69 320-389 23-109 (274)
481 1hdc_A 3-alpha, 20 beta-hydrox 25.7 1.7E+02 0.0058 26.7 7.5 68 320-389 7-89 (254)
482 3ged_A Short-chain dehydrogena 25.7 1.2E+02 0.0042 28.4 6.6 69 319-389 3-85 (247)
483 3ce6_A Adenosylhomocysteinase; 25.7 1.6E+02 0.0056 30.7 8.1 89 314-420 272-362 (494)
484 3hwr_A 2-dehydropantoate 2-red 25.4 2.8E+02 0.0096 26.4 9.3 87 320-417 21-118 (318)
485 1txp_A HnRNP C, heterogeneous 25.4 78 0.0027 20.1 3.3 26 66-95 2-27 (28)
486 4g65_A TRK system potassium up 25.3 61 0.0021 33.4 4.7 64 320-385 5-74 (461)
487 4ezb_A Uncharacterized conserv 25.1 3.8E+02 0.013 25.6 10.3 106 320-439 26-140 (317)
488 1mxh_A Pteridine reductase 2; 24.8 2.1E+02 0.007 26.3 8.0 69 320-389 13-104 (276)
489 3icc_A Putative 3-oxoacyl-(acy 24.5 1.5E+02 0.0051 26.7 6.8 100 320-419 9-147 (255)
490 1spx_A Short-chain reductase f 24.5 1.2E+02 0.0042 27.9 6.4 68 320-389 8-96 (278)
491 3swy_A Cyclic nucleotide-gated 24.2 1.1E+02 0.0039 21.6 4.4 32 64-95 13-44 (46)
492 1m6y_A S-adenosyl-methyltransf 23.4 33 0.0011 33.4 2.1 30 396-425 222-251 (301)
493 2y0c_A BCEC, UDP-glucose dehyd 23.4 3.1E+02 0.011 28.2 9.7 95 320-417 10-126 (478)
494 3g79_A NDP-N-acetyl-D-galactos 23.4 4.4E+02 0.015 27.2 10.8 98 320-423 20-151 (478)
495 3rc1_A Sugar 3-ketoreductase; 23.2 1.7E+02 0.0057 28.5 7.3 65 320-387 29-97 (350)
496 1e7w_A Pteridine reductase; di 22.8 2.7E+02 0.0093 25.9 8.5 53 320-373 11-72 (291)
497 3nyw_A Putative oxidoreductase 22.7 1.7E+02 0.0057 26.8 6.8 68 320-389 9-97 (250)
498 4hkt_A Inositol 2-dehydrogenas 22.5 1.7E+02 0.0057 28.0 7.0 64 320-387 5-71 (331)
499 3ksu_A 3-oxoacyl-acyl carrier 22.4 1.7E+02 0.0057 27.0 6.8 100 319-418 12-146 (262)
500 3lk7_A UDP-N-acetylmuramoylala 22.3 2.3E+02 0.008 28.6 8.4 68 320-389 11-82 (451)
No 1
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.68 E-value=1.6e-16 Score=148.91 Aligned_cols=132 Identities=11% Similarity=-0.037 Sum_probs=102.5
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------------------CCccEEEccCCC
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR------------------GLIPLYVTLNQR 372 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------------------g~i~~~~~d~~~ 372 (467)
+.+.++. +|||+|||+|..+..|+++|.+|+| +|+|+.|++.++++ ..+.++++|+..
T Consensus 18 l~~~~~~--~vLD~GCG~G~~~~~la~~g~~V~g--vD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 18 LNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVG--AELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp HCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEE--EEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred cccCCCC--EEEEeCCCCcHhHHHHHHCCCeEEE--EeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 3445555 8999999999999999999999999 88899999988765 247899999999
Q ss_pred CccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC---------CCHHHHHHHHHHcCceee
Q 012235 373 LPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---------KDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 373 Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---------~~~~~~~~~i~~~Gf~~l 442 (467)
+++.+ ++||+|++..+++|+. ......++.++.|+|||||++++....... -..+++.+++.. ||+..
T Consensus 94 l~~~~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~ 171 (203)
T 1pjz_A 94 LTARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVT 171 (203)
T ss_dssp STHHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEE
T ss_pred CCcccCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEE
Confidence 99876 8999999999995554 334567999999999999985544333211 134577777777 88877
Q ss_pred EEEEcc
Q 012235 443 KWAISP 448 (467)
Q Consensus 443 ~W~~~~ 448 (467)
.+....
T Consensus 172 ~~~~~~ 177 (203)
T 1pjz_A 172 KVGGQD 177 (203)
T ss_dssp EEEESS
T ss_pred Eecccc
Confidence 666544
No 2
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.68 E-value=6.9e-16 Score=143.74 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=120.9
Q ss_pred HHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceE
Q 012235 305 FLISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 305 ~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
..+..++. +.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++..+.+..+++..++ .+++||+|
T Consensus 32 ~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v 106 (211)
T 3e23_A 32 ATLTKFLGELPAGA--KILELGCGAGYQAEAMLAAGFDVDA--TDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAV 106 (211)
T ss_dssp HHHHHHHTTSCTTC--EEEESSCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEE
T ss_pred HHHHHHHHhcCCCC--cEEEECCCCCHHHHHHHHcCCeEEE--ECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEE
Confidence 34455554 44555 8999999999999999999999998 7788899998887755788899999888 78999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC------------CCHHHHHHHHHHcC-ceeeEEEEccC-
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------KDLDDYMYMFLQFR-YKKHKWAISPK- 449 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------~~~~~~~~~i~~~G-f~~l~W~~~~k- 449 (467)
+++.+++|+. ......++.++.|+|||||++++....... -+.+.+.+++++.| |+.+.......
T Consensus 107 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~ 185 (211)
T 3e23_A 107 WAHACLLHVP-RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGK 185 (211)
T ss_dssp EECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEE
T ss_pred EecCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCC
Confidence 9999996665 334578999999999999999998654432 14668999999999 99887764433
Q ss_pred ---CCCceEEEEEeecCC
Q 012235 450 ---SKDEVYLSALLEKPP 464 (467)
Q Consensus 450 ---~~devyl~avlqKP~ 464 (467)
...+.|+..+..||.
T Consensus 186 ~~~~~~~~wl~~~~~~~~ 203 (211)
T 3e23_A 186 GFDQELAQFLHVSVRKPE 203 (211)
T ss_dssp CTTSCEEEEEEEEEECCC
T ss_pred CCCCCCceEEEEEEecCc
Confidence 223457777776664
No 3
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.67 E-value=1.1e-15 Score=141.24 Aligned_cols=151 Identities=15% Similarity=0.050 Sum_probs=118.9
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEE
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
.+..++... +. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++. .+.++++|+..+++++++||+|+
T Consensus 33 ~l~~~~~~~-~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 107 (203)
T 3h2b_A 33 LIEPWATGV-DG--VILDVGSGTGRWTGHLASLGHQIEG--LEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLL 107 (203)
T ss_dssp HHHHHHHHC-CS--CEEEETCTTCHHHHHHHHTTCCEEE--ECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEE
T ss_pred HHHHHhccC-CC--eEEEecCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEE
Confidence 344444433 33 7999999999999999999999998 788899999998864 48899999999999899999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------CCHHHHHHHHHHcCceeeEEEEccCCC
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------KDLDDYMYMFLQFRYKKHKWAISPKSK 451 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------~~~~~~~~~i~~~Gf~~l~W~~~~k~~ 451 (467)
+..+++|+.. .....++.++.++|||||.+++..+.... ...+.+.+++++.||+.+....... .
T Consensus 108 ~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-~ 185 (203)
T 3h2b_A 108 AWYSLIHMGP-GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR-F 185 (203)
T ss_dssp EESSSTTCCT-TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT-S
T ss_pred ehhhHhcCCH-HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC-C
Confidence 9999977652 23579999999999999999998765432 2456899999999999998876654 3
Q ss_pred CceEEEEEeecC
Q 012235 452 DEVYLSALLEKP 463 (467)
Q Consensus 452 devyl~avlqKP 463 (467)
...++...-.+|
T Consensus 186 p~~~l~~~~~~~ 197 (203)
T 3h2b_A 186 PHAYLTAEASLE 197 (203)
T ss_dssp SEEEEEEEECC-
T ss_pred cchhhhhhhhhh
Confidence 444554433333
No 4
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.67 E-value=7.2e-16 Score=148.33 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=107.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+...++. +|||+|||+|.++..+++++..|++ +|+++.|++.++++ + .+.++++|+..+|+++++|
T Consensus 29 l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 29 LMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVA--FDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHhCCCCCC--EEEEEeCCCCHHHHHHHHhCCEEEE--EeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 44555666665 8999999999999999999888888 77889998887654 2 3789999999999999999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----------------------CCHHHHHHHHHHcC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------KDLDDYMYMFLQFR 438 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------~~~~~~~~~i~~~G 438 (467)
|+|+++.+++|+.+. ..++.++.|+|||||.|++.++.... ...+.+.+++++.|
T Consensus 105 D~V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 181 (260)
T 1vl5_A 105 HIVTCRIAAHHFPNP---ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAG 181 (260)
T ss_dssp EEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHT
T ss_pred EEEEEhhhhHhcCCH---HHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCC
Confidence 999999999777655 68999999999999999997654322 12347888899999
Q ss_pred ceeeEEEE
Q 012235 439 YKKHKWAI 446 (467)
Q Consensus 439 f~~l~W~~ 446 (467)
|..+.+..
T Consensus 182 f~~~~~~~ 189 (260)
T 1vl5_A 182 FELEELHC 189 (260)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEE
Confidence 98776654
No 5
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.67 E-value=1.3e-16 Score=156.16 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=90.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHH
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
+|||||||+|.++..|++++.+|+| +|+|+.|++.+.+...+.+++++++.+|+++++||+|++..++ ||.+. +
T Consensus 42 ~vLDvGcGtG~~~~~l~~~~~~v~g--vD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~~---~ 115 (257)
T 4hg2_A 42 DALDCGCGSGQASLGLAEFFERVHA--VDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFDL---D 115 (257)
T ss_dssp EEEEESCTTTTTHHHHHTTCSEEEE--EESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCCH---H
T ss_pred CEEEEcCCCCHHHHHHHHhCCEEEE--EeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hHhhH---H
Confidence 8999999999999999999999998 7788999988877767999999999999999999999999999 78766 5
Q ss_pred HHHHHHHhccCCCcEEEEEecccCCCC
Q 012235 400 FILFDWDRILRPGGLLWIDRFFCNKKD 426 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~~~~~~ 426 (467)
.++.++.|+|||||.|++..+.....+
T Consensus 116 ~~~~e~~rvLkpgG~l~~~~~~~~~~~ 142 (257)
T 4hg2_A 116 RFWAELRRVARPGAVFAAVTYGLTRVD 142 (257)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCCBCC
T ss_pred HHHHHHHHHcCCCCEEEEEECCCCCCC
Confidence 799999999999999999877655443
No 6
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.64 E-value=1.9e-15 Score=144.37 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=105.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~ 378 (467)
+...+.+.++. +|||||||+|.++..+++. +.+|++ +|+++.+++.++++ + .+.++++|+..+++ ++
T Consensus 28 l~~~~~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 102 (256)
T 1nkv_A 28 LGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTG--IDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NE 102 (256)
T ss_dssp HHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SS
T ss_pred HHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCCeEEE--EeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CC
Confidence 44455566666 8999999999999999987 778888 77888888887653 2 47899999999988 89
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------------CHHHHHHHHHHcCc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------------DLDDYMYMFLQFRY 439 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------------~~~~~~~~i~~~Gf 439 (467)
+||+|++..+++|+.+. ..++.++.|+|||||.+++.++..... ....+.+++++.||
T Consensus 103 ~fD~V~~~~~~~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 179 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF---AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGY 179 (256)
T ss_dssp CEEEEEEESCGGGTSSS---HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTB
T ss_pred CCCEEEECCChHhcCCH---HHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCC
Confidence 99999999999777655 689999999999999999987543221 23578899999999
Q ss_pred eeeEEE
Q 012235 440 KKHKWA 445 (467)
Q Consensus 440 ~~l~W~ 445 (467)
..+...
T Consensus 180 ~~~~~~ 185 (256)
T 1nkv_A 180 DVVEMV 185 (256)
T ss_dssp CCCEEE
T ss_pred eeEEEE
Confidence 877643
No 7
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.64 E-value=2.1e-15 Score=142.07 Aligned_cols=126 Identities=17% Similarity=0.040 Sum_probs=104.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccceEEecccc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
...++. +|||||||+|.++..+++.+.+|++ +|+++.+++.++++. .+.++++|+..+ +++++||+|++..++
T Consensus 39 ~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l 113 (250)
T 2p7i_A 39 PFFRPG--NLLELGSFKGDFTSRLQEHFNDITC--VEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVL 113 (250)
T ss_dssp GGCCSS--CEEEESCTTSHHHHHHTTTCSCEEE--EESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred hhcCCC--cEEEECCCCCHHHHHHHHhCCcEEE--EeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence 344454 7999999999999999999888988 778899999988764 578999998887 468899999999999
Q ss_pred ccccchhhHHHHHHHHH-hccCCCcEEEEEecccC------------------------------CCCHHHHHHHHHHcC
Q 012235 390 DGWLDMLLLDFILFDWD-RILRPGGLLWIDRFFCN------------------------------KKDLDDYMYMFLQFR 438 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~-RvLKPGG~LiI~~~~~~------------------------------~~~~~~~~~~i~~~G 438 (467)
+|+.+. ..++.++. |+|||||.+++.++... .-..+.+.+++++.|
T Consensus 114 ~~~~~~---~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 190 (250)
T 2p7i_A 114 EHIDDP---VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 190 (250)
T ss_dssp GGCSSH---HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred HhhcCH---HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCC
Confidence 887665 68999999 99999999999875432 013458889999999
Q ss_pred ceeeEEE
Q 012235 439 YKKHKWA 445 (467)
Q Consensus 439 f~~l~W~ 445 (467)
|+.+.+.
T Consensus 191 f~~~~~~ 197 (250)
T 2p7i_A 191 LQVTYRS 197 (250)
T ss_dssp CEEEEEE
T ss_pred CeEEEEe
Confidence 9888764
No 8
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.64 E-value=3e-15 Score=146.67 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=86.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFD 381 (467)
++++. +|||+|||+|.++..|+++ |.+|+| +|+|+.|++.|+++ + .+.++++|+..+|+ +.||
T Consensus 68 ~~~~~--~vLDlGcGtG~~~~~la~~~~~~~~~v~g--vD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d 141 (261)
T 4gek_A 68 VQPGT--QVYDLGCSLGAATLSVRRNIHHDNCKIIA--IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENAS 141 (261)
T ss_dssp CCTTC--EEEEETCTTTHHHHHHHHTCCSSSCEEEE--EESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEE
T ss_pred CCCCC--EEEEEeCCCCHHHHHHHHhcCCCCCEEEE--EECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccc
Confidence 56666 8999999999999999875 568888 88899999998764 2 37899999999887 4599
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+|++++++ |+.++.....++.+++|+|||||.|++.+....
T Consensus 142 ~v~~~~~l-~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 142 MVVLNFTL-QFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp EEEEESCG-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cceeeeee-eecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 99999999 555544456899999999999999999876543
No 9
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=7.5e-15 Score=133.15 Aligned_cols=146 Identities=17% Similarity=0.098 Sum_probs=115.9
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEec-cccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTT-GFMD 390 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~-~~L~ 390 (467)
+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++. .+.++.+|...+++++++||+|+++ .++
T Consensus 44 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~- 118 (195)
T 3cgg_A 44 APRGA--KILDAGCGQGRIGGYLSKQGHDVLG--TDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVM- 118 (195)
T ss_dssp SCTTC--EEEEETCTTTHHHHHHHHTTCEEEE--EESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCG-
T ss_pred ccCCC--eEEEECCCCCHHHHHHHHCCCcEEE--EcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHH-
Confidence 34454 8999999999999999999988988 677788888888764 4889999999888888999999998 566
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC----CCCceEEEEEeecC
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK----SKDEVYLSALLEKP 463 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k----~~devyl~avlqKP 463 (467)
|+........++.++.++|+|||.+++..........+.+.+.+++.||.......... ..+..++..+++|+
T Consensus 119 ~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 119 GFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred hhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 44444446789999999999999999987766555677899999999998876543311 23344667778875
No 10
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.63 E-value=3.2e-15 Score=139.55 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=115.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+.+.++. +|||+|||+|.++..+++.+ ..+++ +|+++.+++.++++ + .+.++.+|...++++
T Consensus 28 ~~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 28 KVLKEFGLKEGM--TVLDVGTGAGFYLPYLSKMVGEKGKVYA--IDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHTCCTTC--EEEESSCTTCTTHHHHHHHHTTTCEEEE--EESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred HHHHHhCCCCCC--EEEEEecCCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence 344555666665 89999999999999999885 67888 77788888877654 2 478999999999998
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------CHHHHHHHHHHcCceeeEEEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+++||+|+++.+++|+.+. ..++.++.|+|||||.+++.++..... ..+++.+++++.||+.+....
T Consensus 104 ~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 180 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEP---LKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE 180 (219)
T ss_dssp SSCEEEEEEESCGGGCSSH---HHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeeEEEeehhhhhcCCH---HHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence 9999999999999777554 689999999999999999987654322 356899999999999887644
Q ss_pred ccCCCCceEEEEEeecCC
Q 012235 447 SPKSKDEVYLSALLEKPP 464 (467)
Q Consensus 447 ~~k~~devyl~avlqKP~ 464 (467)
... .+...+.+||.
T Consensus 181 ~~~----~~~~~~~~k~~ 194 (219)
T 3dh0_A 181 VGK----YCFGVYAMIVK 194 (219)
T ss_dssp ETT----TEEEEEEECC-
T ss_pred eCC----ceEEEEEEecc
Confidence 322 23334566663
No 11
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.63 E-value=2.2e-15 Score=144.02 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=108.0
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEec
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
.+.++. +|||+|||+|.++..++++ +..|++ +|+++.+++.+.++. .+.++++|...+|+++++||+|++.
T Consensus 52 ~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 127 (266)
T 3ujc_A 52 ELNENS--KVLDIGSGLGGGCMYINEKYGAHTHG--IDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSR 127 (266)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEE
T ss_pred CCCCCC--EEEEECCCCCHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHH
Confidence 344454 8999999999999999998 889998 778899999998763 5789999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCceeeEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.+++|+.. .....++.++.|+|||||.+++.++.... ...+.+.+++++.||+.+....
T Consensus 128 ~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 128 DAILALSL-ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp SCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCh-HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 99977632 33579999999999999999998765433 1355888999999998887653
No 12
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.63 E-value=4.3e-15 Score=141.76 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=108.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~s 379 (467)
.+.+.+.+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.++++|+..+|+++++
T Consensus 12 ~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 12 LMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIG--VDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred hHHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 455667777776 9999999999999999999888888 77788888877653 2 478899999999998999
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----------------------CCHHHHHHHHHHc
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------KDLDDYMYMFLQF 437 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------~~~~~~~~~i~~~ 437 (467)
||+|++..+++|+.+. ..++.++.|+|||||.+++.++.... ...+.+.+++++.
T Consensus 88 fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 164 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV---RKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSAN 164 (239)
T ss_dssp EEEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHT
T ss_pred EEEEEECCchhhccCH---HHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHC
Confidence 9999999999777655 68999999999999999997654322 1244788888999
Q ss_pred CceeeEEE
Q 012235 438 RYKKHKWA 445 (467)
Q Consensus 438 Gf~~l~W~ 445 (467)
||..+...
T Consensus 165 Gf~~~~~~ 172 (239)
T 1xxl_A 165 QLAYQDIQ 172 (239)
T ss_dssp TEEEEEEE
T ss_pred CCcEEEEE
Confidence 99866554
No 13
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.63 E-value=3.7e-15 Score=143.63 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=86.2
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEecc-ccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTG-FMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~-~L~h~~~~~~ 397 (467)
+|||+|||+|.++..+++.+..|++ +|+++.+++.++++. .+.++++|+..+++ +++||+|++.. +++|+.+...
T Consensus 53 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~ 129 (263)
T 3pfg_A 53 SLLDVACGTGMHLRHLADSFGTVEG--LELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAE 129 (263)
T ss_dssp EEEEETCTTSHHHHHHTTTSSEEEE--EESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHH
T ss_pred cEEEeCCcCCHHHHHHHHcCCeEEE--EECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHH
Confidence 8999999999999999999999988 778899999988764 48899999999888 88999999998 9977766555
Q ss_pred HHHHHHHHHhccCCCcEEEEEe
Q 012235 398 LDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~ 419 (467)
...++.++.++|||||.|++..
T Consensus 130 ~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 130 LDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCcEEEEEe
Confidence 7889999999999999999963
No 14
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.62 E-value=1.1e-14 Score=135.77 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=109.3
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccceEE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
..+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ +.+.++++|+..++ ++++||+|+
T Consensus 45 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 119 (216)
T 3ofk_A 45 LSLSSGAVS--NGLEIGCAAGAFTEKLAPHCKRLTV--IDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIV 119 (216)
T ss_dssp HHTTTSSEE--EEEEECCTTSHHHHHHGGGEEEEEE--EESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEE
T ss_pred HHcccCCCC--cEEEEcCCCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEE
Confidence 334444443 8999999999999999999888888 77888999888765 24789999999988 689999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------CCCCHHHHHHHHHHcCceeeEEEEcc-CCCCceEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------NKKDLDDYMYMFLQFRYKKHKWAISP-KSKDEVYL 456 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------~~~~~~~~~~~i~~~Gf~~l~W~~~~-k~~devyl 456 (467)
++.+++|+.+...+..++.++.++|||||.+++.++.. .....+.+..++... +..+...... ...++-++
T Consensus 120 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~ 198 (216)
T 3ofk_A 120 VAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA-LTEVERVQCQGQSADEDCL 198 (216)
T ss_dssp EESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHH-SEEEEEEEEECSSTTCEEE
T ss_pred EccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhh-ccceEEEeccCCccccchh
Confidence 99999888776666789999999999999999976322 122333444555432 3333222111 12344567
Q ss_pred EEEeecCCC
Q 012235 457 SALLEKPPR 465 (467)
Q Consensus 457 ~avlqKP~~ 465 (467)
..+++||.+
T Consensus 199 l~~~~~~~~ 207 (216)
T 3ofk_A 199 LARFRNPER 207 (216)
T ss_dssp EEEEECCC-
T ss_pred HHHHhCCcc
Confidence 778999854
No 15
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.61 E-value=1.1e-14 Score=134.98 Aligned_cols=130 Identities=11% Similarity=0.060 Sum_probs=107.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccceEEeccccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+.++. +|||+|||+|.++..+++.+.++++ +|+++.+++.+++.+ .+.++++|+..+ +++++||+|+++.+++
T Consensus 44 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~ 118 (218)
T 3ou2_A 44 GNIRG--DVLELASGTGYWTRHLSGLADRVTA--LDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLA 118 (218)
T ss_dssp TTSCS--EEEEESCTTSHHHHHHHHHSSEEEE--EESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGG
T ss_pred CCCCC--eEEEECCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhh
Confidence 55555 8999999999999999999999998 778899999988765 378899999888 7789999999999996
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------------------CCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------------------KDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------------------~~~~~~~~~i~~~Gf 439 (467)
|+.++ ....++.++.++|||||.+++.++.... ...+++.+++++.||
T Consensus 119 ~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 197 (218)
T 3ou2_A 119 HVPDD-RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW 197 (218)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTE
T ss_pred cCCHH-HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCC
Confidence 66553 3578999999999999999998663321 144588999999999
Q ss_pred eeeEEEEcc
Q 012235 440 KKHKWAISP 448 (467)
Q Consensus 440 ~~l~W~~~~ 448 (467)
+...|....
T Consensus 198 ~v~~~~~~~ 206 (218)
T 3ou2_A 198 SCSVDEVHP 206 (218)
T ss_dssp EEEEEEEET
T ss_pred EEEeeeccc
Confidence 977776643
No 16
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.61 E-value=7.2e-16 Score=149.06 Aligned_cols=169 Identities=20% Similarity=0.260 Sum_probs=121.0
Q ss_pred CCCCcHH-HHHHHHHcCCCCCCCCCccccCCCCCCCCccCCccCCCCCCCCcccccccccccccccccCCCCCCCCccCC
Q 012235 206 YCKDDWN-LAQKLMVNGCDPLPRRRCLTRASKVYQKPFPINESLWKLPDGRNVRWSNYQCRNFECLSSKNPKRGYSKCTG 284 (467)
Q Consensus 206 ~Cp~d~~-l~~~l~~~~C~plprr~C~~~ap~gY~~plp~P~s~~~~p~d~~~~W~~y~c~~~~cl~s~~~~~~~~~C~~ 284 (467)
.||.|.. +.+......|+. +|+++.+..||.+.++.+.+....|++..
T Consensus 4 ~Cp~C~~~~~~~~~~~~C~~---~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~---------------------------- 52 (269)
T 1p91_A 4 SCPLCHQPLSREKNSYICPQ---RHQFDMAKEGYVNLLPVQHKRSRDPGDSA---------------------------- 52 (269)
T ss_dssp BCTTTCCBCEEETTEEECTT---CCEEEBCTTSCEECSCSSSSCSCCCSSSH----------------------------
T ss_pred cCCCCCccceeCCCEEECCC---CCcCCcCCCEEEEeecccccCCCCCCCCH----------------------------
Confidence 4999865 322223458987 89999999999998887665433333222
Q ss_pred chhhhcccccccccCCcChHH--HHHHHhc--C-CCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHH
Q 012235 285 CFEMDKEKPKWVANRSVPVDF--LISDILA--I-KPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMI 357 (467)
Q Consensus 285 cfdm~~e~~~W~~~~~~~~d~--~I~~lL~--l-~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a 357 (467)
++...+..|.. .+.+... .+.+++. + .++. +|||+|||+|.++..+++. +..+++ +|+++.+++.+
T Consensus 53 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a 125 (269)
T 1p91_A 53 --EMMQARRAFLD-AGHYQPLRDAIVAQLRERLDDKAT--AVLDIGCGEGYYTHAFADALPEITTFG--LDVSKVAIKAA 125 (269)
T ss_dssp --HHHHHHHHHHT-TTTTHHHHHHHHHHHHHHSCTTCC--EEEEETCTTSTTHHHHHHTCTTSEEEE--EESCHHHHHHH
T ss_pred --HHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCCCCC--EEEEECCCCCHHHHHHHHhCCCCeEEE--EeCCHHHHHHH
Confidence 23334444444 3332211 1222222 1 3444 8999999999999999987 778888 77889999999
Q ss_pred HHcCC-ccEEEccCCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 358 ALRGL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 358 ~~rg~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.++.. +.+..+|...+|+++++||+|++..+. ..+.++.|+|||||.+++.++..
T Consensus 126 ~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 126 AKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp HHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred HHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 87753 789999999999989999999997764 35899999999999999987654
No 17
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.61 E-value=2.3e-14 Score=133.84 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=105.5
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCccCCCccceEEec
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.+...++. +|||+|||+|.++..+++++..+++ +|+++.+++.++++. .+.++++|+..++++ ++||+|++.
T Consensus 39 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~ 113 (220)
T 3hnr_A 39 EDVVNKSFG--NVLEFGVGTGNLTNKLLLAGRTVYG--IEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVST 113 (220)
T ss_dssp HHHHHTCCS--EEEEECCTTSHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEE
T ss_pred HHhhccCCC--eEEEeCCCCCHHHHHHHhCCCeEEE--EeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEEC
Confidence 334444555 8999999999999999999999998 788899999888763 488999999999987 999999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------------CHHHHHHHHHHcC
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------------DLDDYMYMFLQFR 438 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------------~~~~~~~~i~~~G 438 (467)
.+++|+.+.. ...++.++.|+|||||.+++.++..... ..+++.+++++.|
T Consensus 114 ~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 192 (220)
T 3hnr_A 114 YAFHHLTDDE-KNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNG 192 (220)
T ss_dssp SCGGGSCHHH-HHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTT
T ss_pred cchhcCChHH-HHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCC
Confidence 9996666552 3459999999999999999987543221 2357888999999
Q ss_pred ceeeEEE
Q 012235 439 YKKHKWA 445 (467)
Q Consensus 439 f~~l~W~ 445 (467)
|+.....
T Consensus 193 f~v~~~~ 199 (220)
T 3hnr_A 193 FHVTFTR 199 (220)
T ss_dssp EEEEEEE
T ss_pred CEEEEee
Confidence 9755443
No 18
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.61 E-value=7.3e-15 Score=144.01 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=105.8
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ ..+.++++|+..+|+++++||+|
T Consensus 79 ~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 154 (297)
T 2o57_A 79 VLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDC--LNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI 154 (297)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCC--EEEEeCCCCCHHHHHHHHHhCCEEEE--EeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEE
Confidence 555665 8999999999999999987 888888 77788888877653 24789999999999999999999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCceeeEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~l~W 444 (467)
++..+++|+.+. ..++.++.|+|||||.+++.++.... .....+.+++++.||..+..
T Consensus 155 ~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 155 WSQDAFLHSPDK---LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp EEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred EecchhhhcCCH---HHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 999999888764 68999999999999999998764322 13447788999999988876
Q ss_pred EE
Q 012235 445 AI 446 (467)
Q Consensus 445 ~~ 446 (467)
..
T Consensus 232 ~~ 233 (297)
T 2o57_A 232 FS 233 (297)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 19
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.61 E-value=1.8e-14 Score=134.87 Aligned_cols=130 Identities=16% Similarity=0.312 Sum_probs=108.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----------CccEEEccCCCCccCCCccce
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----------LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----------~i~~~~~d~~~Lpf~d~sFDl 382 (467)
.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++. .+.++.++...+++++++||+
T Consensus 29 ~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 104 (235)
T 3sm3_A 29 QEDD--EILDIGCGSGKISLELASKGYSVTG--IDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDF 104 (235)
T ss_dssp CTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEE
T ss_pred CCCC--eEEEECCCCCHHHHHHHhCCCeEEE--EECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeE
Confidence 3454 8999999999999999999999998 777888888887632 257889999999998999999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC--------------------------------------C
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN--------------------------------------K 424 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~--------------------------------------~ 424 (467)
|++..+++|+.+......++.++.++|||||.+++.++... .
T Consensus 105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (235)
T 3sm3_A 105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHH 184 (235)
T ss_dssp EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEEC
T ss_pred EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEe
Confidence 99999998887775556899999999999999999876332 1
Q ss_pred CCHHHHHHHHHHcCceeeEEEEc
Q 012235 425 KDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 425 ~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
-..+++.+++++.||+.+.+...
T Consensus 185 ~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 185 FTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp BCHHHHHHHHHTTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEEEEec
Confidence 24568999999999998887654
No 20
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.60 E-value=5.5e-15 Score=141.38 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=104.1
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+|||+|||+|.++..+++.+. .|++ +|+++.+++.++++. .+.++++|+..+++++++||+|++..+++|+.+
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 123 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAKKVLG--IDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS 123 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh
Confidence 3899999999999999999987 8888 778899999988763 478999999999998999999999999977754
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccC------------C-------------------------------CCHHHHH
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCN------------K-------------------------------KDLDDYM 431 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~------------~-------------------------------~~~~~~~ 431 (467)
. ..++.++.|+|||||.+++..+... . ...+++.
T Consensus 124 ~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 200 (253)
T 3g5l_A 124 F---DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYI 200 (253)
T ss_dssp H---HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHH
T ss_pred H---HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHH
Confidence 4 6899999999999999999743210 0 0556899
Q ss_pred HHHHHcCceeeEEEEc
Q 012235 432 YMFLQFRYKKHKWAIS 447 (467)
Q Consensus 432 ~~i~~~Gf~~l~W~~~ 447 (467)
+++++.||+.+.....
T Consensus 201 ~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 201 QTLLKNGFQINSVIEP 216 (253)
T ss_dssp HHHHHTTEEEEEEECC
T ss_pred HHHHHcCCeeeeeecC
Confidence 9999999998877643
No 21
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.60 E-value=1.2e-14 Score=135.18 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=105.2
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC---ccCCC-ccceE
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL---PFFDN-TMDLI 383 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L---pf~d~-sFDlV 383 (467)
...+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+++++.+.+..++...+ ++.++ +||+|
T Consensus 45 ~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v 120 (227)
T 3e8s_A 45 LLAILGRQPE--RVLDLGCGEGWLLRALADRGIEAVG--VDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI 120 (227)
T ss_dssp HHHHHHTCCS--EEEEETCTTCHHHHHHHTTTCEEEE--EESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred HHHhhcCCCC--EEEEeCCCCCHHHHHHHHCCCEEEE--EcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEE
Confidence 3334434444 8999999999999999999999988 778899999999887788999887766 54444 59999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-----------------------------CCHHHHHHHH
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-----------------------------KDLDDYMYMF 434 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-----------------------------~~~~~~~~~i 434 (467)
+++.+++ ..+. ..++.++.++|||||++++.++.... ...+++.+++
T Consensus 121 ~~~~~l~-~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (227)
T 3e8s_A 121 CANFALL-HQDI---IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL 196 (227)
T ss_dssp EEESCCC-SSCC---HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHH
T ss_pred EECchhh-hhhH---HHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHH
Confidence 9999994 4433 68999999999999999998763211 1456899999
Q ss_pred HHcCceeeEEEE
Q 012235 435 LQFRYKKHKWAI 446 (467)
Q Consensus 435 ~~~Gf~~l~W~~ 446 (467)
++.||+.+....
T Consensus 197 ~~aGf~~~~~~~ 208 (227)
T 3e8s_A 197 DMAGLRLVSLQE 208 (227)
T ss_dssp HHTTEEEEEEEC
T ss_pred HHcCCeEEEEec
Confidence 999999988765
No 22
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.60 E-value=9.8e-15 Score=138.07 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=105.7
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccceEEecccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++. .+.++++|+..+++++++||+|++..++
T Consensus 51 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 51 VKKEA--EVLDVGCGDGYGTYKLSRTGYKAVG--VDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp SCTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred cCCCC--eEEEEcCCCCHHHHHHHHcCCeEEE--EECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 34455 8999999999999999999999998 777889999988763 4789999999999989999999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCceeeEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+|+.+. ..++.++.++|||||.+++.++.... -..+.+.+++++.||+.+...
T Consensus 127 ~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 127 EWTEEP---LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp TSSSCH---HHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhccCH---HHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 777555 68999999999999999998754321 134578899999999887654
No 23
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.60 E-value=9.5e-15 Score=137.79 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=84.6
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEecc-ccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTG-FMDGW 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~-~L~h~ 392 (467)
.+|||+|||+|.++..+++.+.++++ +|+++.+++.+.++ + .+.++++|+..++++ ++||+|++.. +++|+
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~~~~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~ 115 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFKNTWA--VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYI 115 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSSEEEE--ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGC
T ss_pred CeEEEeCCCCCHHHHHHHHCCCcEEE--EECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccccc
Confidence 38999999999999999999989888 78888888887654 2 478899999988876 8999999998 99777
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+......++.++.++|||||.+++..
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 116 IDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 555556899999999999999999853
No 24
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.60 E-value=1.9e-14 Score=131.60 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=101.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~s 379 (467)
.+.+.+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.++.+|...+++ +++
T Consensus 23 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 97 (199)
T 2xvm_A 23 EVLEAVKVVKPG--KTLDLGCGNGRNSLYLAANGYDVDA--WDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ 97 (199)
T ss_dssp HHHHHTTTSCSC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC
T ss_pred HHHHHhhccCCC--eEEEEcCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC
Confidence 344556655555 8999999999999999999999998 67778888777643 2 47889999998888 889
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-----------CHHHHHHHHHHcCceeeEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-----------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-----------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
||+|++..+++|+. ......++.++.++|||||.+++.++....+ ..+++.++++. |+.+.+.
T Consensus 98 ~D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 98 YDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp EEEEEEESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred ceEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 99999999996554 3346789999999999999988876543221 33477777776 6666654
No 25
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.59 E-value=1.2e-14 Score=141.61 Aligned_cols=127 Identities=13% Similarity=-0.032 Sum_probs=100.5
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-----------------------CccEEEccC
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-----------------------LIPLYVTLN 370 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-----------------------~i~~~~~d~ 370 (467)
.++. +|||+|||+|..+..|+++|.+|+| +|+|+.|++.++++. .+.++++|+
T Consensus 67 ~~~~--~vLD~GCG~G~~~~~La~~G~~V~g--vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 67 QSGL--RVFFPLCGKAIEMKWFADRGHTVVG--VEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp CCSC--EEEETTCTTCTHHHHHHHTTCEEEE--ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCC--eEEEeCCCCcHHHHHHHHCCCeEEE--EECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 3454 8999999999999999999999999 889999999886432 378999999
Q ss_pred CCCccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC---------CCHHHHHHHHHHcCce
Q 012235 371 QRLPFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK---------KDLDDYMYMFLQFRYK 440 (467)
Q Consensus 371 ~~Lpf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~---------~~~~~~~~~i~~~Gf~ 440 (467)
..+++.+ ++||+|++..++.|+. ......++.++.|+|||||.|++.++.... -..+++.+++.. +|+
T Consensus 143 ~~l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~ 220 (252)
T 2gb4_A 143 FDLPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCS 220 (252)
T ss_dssp TTGGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEE
T ss_pred ccCCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeE
Confidence 9998864 8999999999996654 334578999999999999999765543211 134577888876 487
Q ss_pred eeEEEE
Q 012235 441 KHKWAI 446 (467)
Q Consensus 441 ~l~W~~ 446 (467)
.+.+..
T Consensus 221 v~~~~~ 226 (252)
T 2gb4_A 221 MQCLEE 226 (252)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 776654
No 26
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.59 E-value=1.8e-14 Score=139.11 Aligned_cols=132 Identities=23% Similarity=0.332 Sum_probs=106.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|+..+|+++++|
T Consensus 55 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 130 (273)
T 3bus_A 55 ALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTG--ISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASF 130 (273)
T ss_dssp HHSCCCTTC--EEEEESCTTSHHHHHHHHHSCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCE
T ss_pred HhcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCEEEE--EeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCc
Confidence 344555555 8999999999999999875 788888 77788888777653 3 3789999999999989999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----------------------CCHHHHHHHHHHcC
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------KDLDDYMYMFLQFR 438 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------~~~~~~~~~i~~~G 438 (467)
|+|++..+++|+.+. ..++.++.|+|||||.+++.++.... ...+.+.+++++.|
T Consensus 131 D~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 207 (273)
T 3bus_A 131 DAVWALESLHHMPDR---GRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE 207 (273)
T ss_dssp EEEEEESCTTTSSCH---HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred cEEEEechhhhCCCH---HHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence 999999999777655 68999999999999999998764321 13357888899999
Q ss_pred ceeeEEEEc
Q 012235 439 YKKHKWAIS 447 (467)
Q Consensus 439 f~~l~W~~~ 447 (467)
|+.+.+...
T Consensus 208 f~~~~~~~~ 216 (273)
T 3bus_A 208 LVVTSTVDI 216 (273)
T ss_dssp CEEEEEEEC
T ss_pred CeEEEEEEC
Confidence 998877643
No 27
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.59 E-value=8.5e-15 Score=139.36 Aligned_cols=124 Identities=11% Similarity=0.124 Sum_probs=103.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC--ccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL--PFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L--pf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|||||||+|.++..+++.+..|++ +|+++.+++.+.++ +.++.+|...+ ++++++||+|++..+++|+.++ .
T Consensus 44 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~-~ 118 (240)
T 3dli_A 44 RVLDIGCGRGEFLELCKEEGIESIG--VDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE-R 118 (240)
T ss_dssp CEEEETCTTTHHHHHHHHHTCCEEE--ECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG-G
T ss_pred eEEEEeCCCCHHHHHHHhCCCcEEE--EECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH-H
Confidence 8999999999999999999999988 78889999988877 78888887775 7888999999999999776643 3
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCC----------------CCHHHHHHHHHHcCceeeEEEEcc
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNK----------------KDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~----------------~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
+..++.++.|+|||||.+++.++.... -..+.+.+++++.||+.+......
T Consensus 119 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 119 LFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 578999999999999999998765332 134588899999999887665443
No 28
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.59 E-value=1.6e-14 Score=139.61 Aligned_cols=128 Identities=19% Similarity=0.267 Sum_probs=103.6
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||||||+|.++..+++.+ ..|++ +|+++.+++.++++ ..+.++++|...+|+++++||+|+
T Consensus 44 ~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 119 (267)
T 3kkz_A 44 LTEKS--LIADIGCGTGGQTMVLAGHVTGQVTG--LDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW 119 (267)
T ss_dssp CCTTC--EEEEETCTTCHHHHHHHTTCSSEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHhccCCEEEE--EeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEE
Confidence 34444 89999999999999999984 48888 77788888877654 238899999999999899999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+..+++|+ +. ..++.++.++|||||.+++.++..... ....+.+++++.||+.+....
T Consensus 120 ~~~~~~~~-~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 120 SEGAIYNI-GF---ERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp ESSCGGGT-CH---HHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred EcCCceec-CH---HHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 99999776 43 689999999999999999987653221 234677889999999887755
Q ss_pred cc
Q 012235 447 SP 448 (467)
Q Consensus 447 ~~ 448 (467)
..
T Consensus 196 ~~ 197 (267)
T 3kkz_A 196 LP 197 (267)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 29
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.58 E-value=1.3e-14 Score=141.49 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=102.9
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCc-cCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLP-FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lp-f~d~sFDlVis~~~L~ 390 (467)
.+|||||||+|.++..+++.+..|++ +|+++.+++.+.++ ..+.++++|+..++ +.+++||+|++..+++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 147 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGHQVIL--CDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE 147 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred CEEEEeCCcchHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence 38999999999999999999999999 77788888888764 23779999999888 7889999999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------------------CCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------------------KKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------------------~~~~~~~~~~i~~~Gf 439 (467)
|+.+. ..++.++.++|||||.+++..+... .-..+++.+++++.||
T Consensus 148 ~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 224 (285)
T 4htf_A 148 WVADP---RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW 224 (285)
T ss_dssp GCSCH---HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred cccCH---HHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence 77655 6899999999999999999765211 1134689999999999
Q ss_pred eeeEEEE
Q 012235 440 KKHKWAI 446 (467)
Q Consensus 440 ~~l~W~~ 446 (467)
+.+.+..
T Consensus 225 ~v~~~~~ 231 (285)
T 4htf_A 225 QIMGKTG 231 (285)
T ss_dssp EEEEEEE
T ss_pred ceeeeee
Confidence 9887754
No 30
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.58 E-value=1.4e-14 Score=138.37 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=102.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||+|||+|.++..+++.+. .|++ +|+++.+++.++++ + .+.++++|+..+|+++++||+|+
T Consensus 44 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 119 (257)
T 3f4k_A 44 LTDDA--KIADIGCGTGGQTLFLADYVKGQITG--IDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIW 119 (257)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHCCSEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHhCCCeEEE--EECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEE
Confidence 34454 899999999999999999854 8888 77788888877653 2 27899999999999899999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+..+++|+ +. ..++.++.++|||||++++.++..... ..+.+.+++++.||..+....
T Consensus 120 ~~~~l~~~-~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (257)
T 3f4k_A 120 SEGAIYNI-GF---ERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFI 195 (257)
T ss_dssp EESCSCCC-CH---HHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ecChHhhc-CH---HHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 99999766 43 689999999999999999987543221 234778899999998887543
Q ss_pred c
Q 012235 447 S 447 (467)
Q Consensus 447 ~ 447 (467)
.
T Consensus 196 ~ 196 (257)
T 3f4k_A 196 L 196 (257)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.58 E-value=1.6e-14 Score=133.63 Aligned_cols=122 Identities=23% Similarity=0.366 Sum_probs=100.6
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++++ +.++++ +|+++.+++.++++ + .+.++++|...+++++++||+|+++.+++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRA--LDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEE--EECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 8999999999999999987 667777 77788888887664 2 478999999999999999999999999977
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCceeeEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
+.+. ..++.++.|+|||||.+++.+...... ..+.+.+++++.||+.+..
T Consensus 124 ~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 124 WEDV---ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp CSCH---HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred ccCH---HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 7544 689999999999999999976443210 1247888999999988876
Q ss_pred EE
Q 012235 445 AI 446 (467)
Q Consensus 445 ~~ 446 (467)
..
T Consensus 201 ~~ 202 (219)
T 3dlc_A 201 IL 202 (219)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 32
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.57 E-value=1.3e-14 Score=138.23 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=104.6
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.+|||||||+|.++..+++++ ..+++ +|+++.+++.++++. .+.++++|+..+++++++||+|++..+++|+.
T Consensus 95 ~~vLDiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 172 (254)
T 1xtp_A 95 SRALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT 172 (254)
T ss_dssp SEEEEETCTTTHHHHHTHHHHCSEEEE--EESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred CEEEEECCCcCHHHHHHHHhhcCEEEE--EeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCC
Confidence 389999999999999999884 45788 778899999888763 47889999999998889999999999997665
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCC-------------CHHHHHHHHHHcCceeeEEEEccC
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------------DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------------~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
+ .....++.++.|+|||||.+++.+...... ..+.+.+++++.||+.+.......
T Consensus 173 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 240 (254)
T 1xtp_A 173 D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEE 240 (254)
T ss_dssp H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTT
T ss_pred H-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecCC
Confidence 4 335789999999999999999987532211 346899999999999988765543
No 33
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.57 E-value=1.2e-14 Score=140.73 Aligned_cols=131 Identities=13% Similarity=0.223 Sum_probs=106.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.+.+...++. +|||||||+|.++..+++.+..|+| +|+++.+++.++++..+.++++|+..+|+++++||+|++.
T Consensus 26 l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (261)
T 3ege_A 26 IINLLNLPKGS--VIADIGAGTGGYSVALANQGLFVYA--VEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI 101 (261)
T ss_dssp HHHHHCCCTTC--EEEEETCTTSHHHHHHHTTTCEEEE--ECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred HHHHhCCCCCC--EEEEEcCcccHHHHHHHhCCCEEEE--EeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence 44555555555 8999999999999999999999999 7888888887776667889999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceeeEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
.+++|+.+. ..++.++.|+|| ||.+++.++..... ..+.+. ++++.||..+...
T Consensus 102 ~~l~~~~~~---~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~ 176 (261)
T 3ege_A 102 LAIHHFSHL---EKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAI 176 (261)
T ss_dssp SCGGGCSSH---HHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEE
T ss_pred chHhhccCH---HHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEE
Confidence 999777554 689999999999 99888876642110 123566 8999999777654
Q ss_pred E
Q 012235 446 I 446 (467)
Q Consensus 446 ~ 446 (467)
.
T Consensus 177 ~ 177 (261)
T 3ege_A 177 P 177 (261)
T ss_dssp E
T ss_pred E
Confidence 4
No 34
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.57 E-value=3.6e-14 Score=138.21 Aligned_cols=132 Identities=15% Similarity=0.254 Sum_probs=106.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEe
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
+.+.+...++. +|||||||+|.++..+++.+..|++ +|+++.|++.+.++. .+.+.++|+..+|+ +++||+|++
T Consensus 49 l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~ 123 (279)
T 3ccf_A 49 LLQLLNPQPGE--FILDLGCGTGQLTEKIAQSGAEVLG--TDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFS 123 (279)
T ss_dssp HHHHHCCCTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEE
T ss_pred HHHHhCCCCCC--EEEEecCCCCHHHHHHHhCCCeEEE--EECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEE
Confidence 34555665555 8999999999999999998889998 778899999988763 58899999999987 689999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----------------------------CCHHHHHHHHHHc
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------------KDLDDYMYMFLQF 437 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------------~~~~~~~~~i~~~ 437 (467)
..+++|+.+. ..++.++.|+|||||.+++..+.... ...+.+.+++++.
T Consensus 124 ~~~l~~~~d~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 200 (279)
T 3ccf_A 124 NAMLHWVKEP---EAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQ 200 (279)
T ss_dssp ESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHH
T ss_pred cchhhhCcCH---HHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHc
Confidence 9999665554 68999999999999999997654321 1234678888888
Q ss_pred CceeeEEEE
Q 012235 438 RYKKHKWAI 446 (467)
Q Consensus 438 Gf~~l~W~~ 446 (467)
||+.+.+..
T Consensus 201 Gf~~~~~~~ 209 (279)
T 3ccf_A 201 GFDVTYAAL 209 (279)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 998776543
No 35
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.57 E-value=2.3e-14 Score=135.35 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=109.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCCCccc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d~sFD 381 (467)
.+..++...++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.++++. .+.++++|+..+++++++||
T Consensus 34 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 34 ALRAMLPEVGGL--RIVDLGCGFGWFCRWAHEHGASYVLG--LDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHSCCCTTC--EEEEETCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHhccccCCC--EEEEEcCcCCHHHHHHHHCCCCeEEE--EcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 455566655555 899999999999999999988 8888 777899999988764 37889999999988889999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC---------------------C----------------
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN---------------------K---------------- 424 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~---------------------~---------------- 424 (467)
+|++..+++|+.+. ..++.++.++|||||.+++..+... .
T Consensus 110 ~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (243)
T 3bkw_A 110 LAYSSLALHYVEDV---ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG 186 (243)
T ss_dssp EEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred EEEEeccccccchH---HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence 99999999776544 6899999999999999999753210 0
Q ss_pred -----CCHHHHHHHHHHcCceeeEEEEc
Q 012235 425 -----KDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 425 -----~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
...+++.+++++.||+.+.+...
T Consensus 187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 13568899999999999887654
No 36
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.57 E-value=4.3e-14 Score=133.38 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=100.9
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
.+|||+|||+|.++..+++. +..+++ +|+++.+++.++++- .+.++++|+..+++. ++||+|++..+++|+
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEATFTL--VDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHL 122 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGGS
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccccC
Confidence 38999999999999999998 778888 778889998887652 478999999999886 899999999999666
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCC--------------------------------------CHHHHHHHH
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------------------------DLDDYMYMF 434 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------------------------~~~~~~~~i 434 (467)
.+. ....++.++.|+|||||.+++.++..... ..+++.+++
T Consensus 123 ~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 201 (234)
T 3dtn_A 123 EDE-DKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWL 201 (234)
T ss_dssp CHH-HHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHH
Confidence 443 34569999999999999999987554321 224667789
Q ss_pred HHcCceeeEEEE
Q 012235 435 LQFRYKKHKWAI 446 (467)
Q Consensus 435 ~~~Gf~~l~W~~ 446 (467)
++.||+.+....
T Consensus 202 ~~aGF~~v~~~~ 213 (234)
T 3dtn_A 202 KEAGFRDVSCIY 213 (234)
T ss_dssp HHTTCEEEEEEE
T ss_pred HHcCCCceeeee
Confidence 999998875543
No 37
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.57 E-value=2e-14 Score=142.69 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=104.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||+|||+|.++..++++ +..|++ +|+++.+++.++++ + .+.++++|+..+|+++++||+|+
T Consensus 115 ~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 190 (312)
T 3vc1_A 115 AGPDD--TLVDAGCGRGGSMVMAHRRFGSRVEG--VTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASW 190 (312)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEE
Confidence 44555 8999999999999999998 889998 77788888877653 2 47899999999999899999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC--------------------CHHHHHHHHHHcCceeeEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
+..+++|+ + ...++.++.|+|||||.+++.++..... ..+.+.+++++.||+.+..
T Consensus 191 ~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 191 NNESTMYV-D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp EESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred ECCchhhC-C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 99999766 4 4689999999999999999987654331 2457888999999988876
Q ss_pred EE
Q 012235 445 AI 446 (467)
Q Consensus 445 ~~ 446 (467)
..
T Consensus 267 ~~ 268 (312)
T 3vc1_A 267 VD 268 (312)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 38
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.57 E-value=2.5e-14 Score=128.51 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=102.0
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-CCccEEEccCCCCccCCCccceEEecc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-GLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-g~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.+.+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ ..+.+..+| +++++++||+|++..
T Consensus 11 ~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 11 PNIFEGKKG--VIVDYGCGNGFYCKYLLEFATKLYC--IDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFAN 83 (170)
T ss_dssp HHHHSSCCE--EEEEETCTTCTTHHHHHTTEEEEEE--ECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEES
T ss_pred HhcCcCCCC--eEEEECCCCCHHHHHHHhhcCeEEE--EeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEcc
Confidence 334555555 8999999999999999998767777 78889999988876 347888888 778889999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------CHHHHHHHHHHcCceeeEEEEc
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------DLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
+++|+.+. ..++.++.|+|||||.+++.++..... ..+++.++++ ||+.+.....
T Consensus 84 ~l~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 84 SFHDMDDK---QHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp CSTTCSCH---HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred chhcccCH---HHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC
Confidence 99777554 689999999999999999987755322 3457777777 9988876543
No 39
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.56 E-value=6.7e-14 Score=132.55 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=103.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-------CccEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-------LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-------~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..+++.+..|++ +|+++.+++.++++. .+.++++|+..++ ++++||+|++..+++|+
T Consensus 69 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 69 RALVPGCGGGHDVVAMASPERFVVG--LDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEETCTTCHHHHHHCBTTEEEEE--ECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTS
T ss_pred CEEEeCCCCCHHHHHHHhCCCeEEE--EECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcC
Confidence 8999999999999999998888888 788899988887642 2778999998877 46699999999999665
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCC--------CCHHHHHHHHHHcCceeeEEEEccC
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------KDLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------~~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
. +.....++.++.++|||||.+++..+.... -..+.+.++++..||+.+.......
T Consensus 146 ~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 146 E-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp C-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTT
T ss_pred C-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCC
Confidence 4 334678999999999999999997765432 1356899999999999988765544
No 40
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.56 E-value=1.4e-14 Score=142.60 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=85.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc---------CCccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR---------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r---------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||||||+|.++..+++.+..|++ +|+++.+++.++++ ..+.++++|+..+++ +++||+|++.....
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGWEVTA--LELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI 161 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTCCEEE--EESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred cEEEEeccCCHHHHHHHHcCCeEEE--EECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence 7999999999999999999999999 77788898888754 347899999999988 78999999775554
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
|+.++.....++.++.++|||||.|++..+..
T Consensus 162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 162 NELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp TTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 77776557899999999999999999976543
No 41
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.55 E-value=1.9e-14 Score=142.48 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=112.9
Q ss_pred CCCCCCceEEEECCCccHHHHHHhh--C-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMRE--Q-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~--~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.++. +|||||||+|.++..++. . +..|++ +|+++.+++.+.++ + .+.++++|+..++++ ++||+
T Consensus 116 l~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 190 (305)
T 3ocj_A 116 LRPGC--VVASVPCGWMSELLALDYSACPGVQLVG--IDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDL 190 (305)
T ss_dssp CCTTC--EEEETTCTTCHHHHTSCCTTCTTCEEEE--EESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEE
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHhcCCCCeEEE--EECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEE
Confidence 45555 899999999999999952 2 668888 77788888888754 2 278999999999987 99999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC------------------------------------CC
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------------------------------KD 426 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------------------------------~~ 426 (467)
|+++.+++|+.+......++.++.++|||||.+++.++.... ..
T Consensus 191 v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
T 3ocj_A 191 LTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRT 270 (305)
T ss_dssp EECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCC
Confidence 999999988877765556899999999999999998744210 13
Q ss_pred HHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 427 LDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
.+++.+++++.||+.+..... ....+...+.+||
T Consensus 271 ~~~~~~~l~~aGF~~v~~~~~---~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 271 HAQTRAQLEEAGFTDLRFEDD---RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEECC---TTSSSCEEEEECC
T ss_pred HHHHHHHHHHCCCEEEEEEcc---cCceeeEEEEecC
Confidence 558899999999999887652 2334556777887
No 42
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.55 E-value=9.2e-14 Score=132.26 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=104.5
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC------CccEEEccCCCCccCCCccceEEecccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG------LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg------~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
.+|||||||+|.++..+++.+ ..+++ +|+++.+++.++++. .+.++.+|+..+++++++||+|++..+++|
T Consensus 81 ~~vLDiGcG~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 81 SCALDCGAGIGRITKRLLLPLFREVDM--VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEE--EESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhcCCEEEE--EeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 389999999999999999884 47888 778899998887653 267889999999888889999999999966
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCC------------CCHHHHHHHHHHcCceeeEEEEccC
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------KDLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------~~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
+.+. .+..++.++.++|||||.+++.++.... ...+.+.+++++.||+.+.+.....
T Consensus 159 ~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 227 (241)
T 2ex4_A 159 LTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQEN 227 (241)
T ss_dssp SCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCC
Confidence 6554 3468999999999999999997754321 1356899999999999988865543
No 43
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.55 E-value=8e-14 Score=128.87 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=110.1
Q ss_pred cCCCCCCceEEEECCCccHH-HHHHhhCCCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEe
Q 012235 312 AIKPGETRIGLDFGVGTGTF-AARMREQNVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~-a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
...++. +|||+|||+|.+ ...+++.+.++++ +|+++.+++.++++ ..+.++++|+..+++++++||+|++
T Consensus 20 ~~~~~~--~vLDiGcG~G~~~~~~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 95 (209)
T 2p8j_A 20 ESNLDK--TVLDCGAGGDLPPLSIFVEDGYKTYG--IEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYS 95 (209)
T ss_dssp HSSSCS--EEEEESCCSSSCTHHHHHHTTCEEEE--EECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred ccCCCC--EEEEECCCCCHHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEE
Confidence 344454 899999999987 5566667888988 77888888877653 2488999999999988899999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcC
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFR 438 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~G 438 (467)
..+++|+. ......++.++.++|||||.+++.++..... +.+++.+++..+|
T Consensus 96 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g 174 (209)
T 2p8j_A 96 YGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMK 174 (209)
T ss_dssp CSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSE
T ss_pred cChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcC
Confidence 99997764 3346799999999999999999987643211 2346777788887
Q ss_pred ceeeEEEEcc---CCC--CceEEEEEeecCCCC
Q 012235 439 YKKHKWAISP---KSK--DEVYLSALLEKPPRA 466 (467)
Q Consensus 439 f~~l~W~~~~---k~~--devyl~avlqKP~~~ 466 (467)
+....-.... .+. ...|...+.+|-.++
T Consensus 175 ~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~ 207 (209)
T 2p8j_A 175 VLFKEDRVVERINDGLKIKQGYVDYIAEKFSKS 207 (209)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred ceeeeeeeeehhhcCCcccceeeeeehhhhhhc
Confidence 7544322211 122 356888888886554
No 44
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.55 E-value=2.7e-14 Score=138.80 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=103.6
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc--C---------------------------------C
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR--G---------------------------------L 362 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r--g---------------------------------~ 362 (467)
.+|||||||+|.++..++..+. .|++ +|+|+.|++.++++ . .
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~~~v~g--~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSFQDITL--SDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEEEEEE--EESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHhhhcceee--ccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 3899999999998888877776 5887 88889998877642 0 0
Q ss_pred c-cEEEccCCCC-cc---CCCccceEEecccccccc-chhhHHHHHHHHHhccCCCcEEEEEecccCC------------
Q 012235 363 I-PLYVTLNQRL-PF---FDNTMDLIHTTGFMDGWL-DMLLLDFILFDWDRILRPGGLLWIDRFFCNK------------ 424 (467)
Q Consensus 363 i-~~~~~d~~~L-pf---~d~sFDlVis~~~L~h~~-~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------ 424 (467)
+ .++++|+... |+ ..++||+|+++++++|.. +...+..++.++.|+|||||+|+++......
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~ 214 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV 214 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence 2 2778887763 43 357999999999996653 3344678999999999999999998643221
Q ss_pred -CCHHHHHHHHHHcCceeeEEEEccC------CCCceEEEEEeecCC
Q 012235 425 -KDLDDYMYMFLQFRYKKHKWAISPK------SKDEVYLSALLEKPP 464 (467)
Q Consensus 425 -~~~~~~~~~i~~~Gf~~l~W~~~~k------~~devyl~avlqKP~ 464 (467)
-..+++.+.++..||..+.+..... ...+.++..+.+|+-
T Consensus 215 ~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 215 ALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 261 (263)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred ccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence 1455899999999999887765431 111223344667764
No 45
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.54 E-value=8.4e-14 Score=135.78 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=101.6
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+.++. +|||||||+|.++..+++ .+..|++ +|+++.+++.+.++ + .+.++.+|...+| ++||+
T Consensus 60 ~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g--vd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~ 132 (287)
T 1kpg_A 60 LGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVG--LTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDR 132 (287)
T ss_dssp TTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSE
T ss_pred cCCCCcC--EEEEECCcccHHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeE
Confidence 3445555 899999999999999994 4888888 77888888888664 2 4788899987765 89999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC--------------------------------CCHHHH
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------------------------------KDLDDY 430 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------------------------------~~~~~~ 430 (467)
|++..+++|+.+. ....++.++.|+|||||.+++.++.... ...+.+
T Consensus 133 v~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (287)
T 1kpg_A 133 IVSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 211 (287)
T ss_dssp EEEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEeCchhhcChH-HHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence 9999999777532 2478999999999999999998765321 134578
Q ss_pred HHHHHHcCceeeEEEE
Q 012235 431 MYMFLQFRYKKHKWAI 446 (467)
Q Consensus 431 ~~~i~~~Gf~~l~W~~ 446 (467)
.+++++.||+.+.+..
T Consensus 212 ~~~l~~aGf~~~~~~~ 227 (287)
T 1kpg_A 212 QECASANGFTVTRVQS 227 (287)
T ss_dssp HHHHHTTTCEEEEEEE
T ss_pred HHHHHhCCcEEEEEEe
Confidence 8889999999888764
No 46
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.54 E-value=1.4e-13 Score=129.68 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=84.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEecc-ccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTG-FMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~-~L~h~~~~~~ 397 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.++++. .+.++++|+..+++ +++||+|+|.. +++|+.+...
T Consensus 43 ~vLdiG~G~G~~~~~l~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~ 119 (239)
T 3bxo_A 43 SLLDVACGTGTHLEHFTKEFGDTAG--LELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEE 119 (239)
T ss_dssp EEEEETCTTSHHHHHHHHHHSEEEE--EESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHH
T ss_pred eEEEecccCCHHHHHHHHhCCcEEE--EeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHH
Confidence 8999999999999999998888888 778899999988764 48899999998887 78999999655 8866655555
Q ss_pred HHHHHHHHHhccCCCcEEEEEec
Q 012235 398 LDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...++.++.++|||||.+++.++
T Consensus 120 ~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 120 LGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp HHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHHHHHhcCCCeEEEEEec
Confidence 78999999999999999999753
No 47
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.53 E-value=2.3e-13 Score=128.40 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=83.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||+|||+|.++..+++. ..+++ +|+++.+++.++++ ..+.++++|+..++++ ++||+|++..
T Consensus 31 ~~~~~--~vLdiG~G~G~~~~~l~~~-~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~ 104 (243)
T 3d2l_A 31 VEPGK--RIADIGCGTGTATLLLADH-YEVTG--VDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILC 104 (243)
T ss_dssp SCTTC--EEEEESCTTCHHHHHHTTT-SEEEE--EESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECT
T ss_pred cCCCC--eEEEecCCCCHHHHHHhhC-CeEEE--EECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeC
Confidence 33444 8999999999999999988 78888 77888888887654 2478899999888875 8999999987
Q ss_pred -ccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 388 -FMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 388 -~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+++|+.+......++.++.++|||||.+++.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 105 DSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp TGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8877756666788999999999999999984
No 48
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.53 E-value=2.8e-13 Score=126.72 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=102.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHcC-----------CccEEEccCCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALRG-----------LIPLYVTLNQRL 373 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~rg-----------~i~~~~~d~~~L 373 (467)
+.+.+...++. +|||+|||+|.++..+++.+ ..+++ +|+++.+++.++++- .+.++++|+..+
T Consensus 21 l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 21 VVAVLKSVNAK--KVIDLGCGEGNLLSLLLKDKSFEQITG--VDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp HHHHHHHTTCC--EEEEETCTTCHHHHHHHTSTTCCEEEE--EESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred HHHHHhhcCCC--EEEEecCCCCHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 33444444454 89999999999999999986 57888 777888988887641 578999999888
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-----C--------------CCHHHHH---
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-----K--------------KDLDDYM--- 431 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-----~--------------~~~~~~~--- 431 (467)
++.+++||+|++..+++|+.++ .+..++.++.++|||||.+++...... . -..+++.
T Consensus 97 ~~~~~~fD~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (219)
T 3jwg_A 97 DKRFSGYDAATVIEVIEHLDEN-RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWA 175 (219)
T ss_dssp CGGGTTCSEEEEESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHH
T ss_pred ccccCCCCEEEEHHHHHhCCHH-HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHH
Confidence 8888999999999999777543 356899999999999997666533211 0 0334555
Q ss_pred -HHHHHcCceeeEEEEccC
Q 012235 432 -YMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 432 -~~i~~~Gf~~l~W~~~~k 449 (467)
+++++.||+..--.++..
T Consensus 176 ~~l~~~~Gf~v~~~~~g~~ 194 (219)
T 3jwg_A 176 VKVAEKYGYSVRFLQIGEI 194 (219)
T ss_dssp HHHHHHHTEEEEEEEESCC
T ss_pred HHHHHHCCcEEEEEecCCc
Confidence 678888986654444443
No 49
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.53 E-value=5e-14 Score=134.57 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=85.7
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ ..+.++++|+..+++++++||+|++..
T Consensus 37 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 37 KGEEP--VFLELGVGTGRIALPLIARGYRYIA--LDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp SSSCC--EEEEETCTTSTTHHHHHTTTCEEEE--EESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCC--EEEEeCCcCCHHHHHHHHCCCEEEE--EECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 44444 8999999999999999999989988 77889999988776 247899999999999899999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+++|+.+. ..++.++.|+|||||.+++.
T Consensus 113 ~l~~~~~~---~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVPDW---PKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCTTH---HHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcCCH---HHHHHHHHHHCCCCcEEEEE
Confidence 99555443 68999999999999999987
No 50
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.52 E-value=8.7e-14 Score=137.18 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=104.5
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|...+ +++|
T Consensus 66 ~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~f 138 (302)
T 3hem_A 66 DKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIG--LTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPV 138 (302)
T ss_dssp HTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEE--EECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCC
T ss_pred HHcCCCCcC--EEEEeeccCcHHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCc
Confidence 334456665 8999999999999999998 888888 77888888887654 3 477889998776 7899
Q ss_pred ceEEeccccccccch------hhHHHHHHHHHhccCCCcEEEEEecccCC------------------------------
Q 012235 381 DLIHTTGFMDGWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNK------------------------------ 424 (467)
Q Consensus 381 DlVis~~~L~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~------------------------------ 424 (467)
|+|++..+++|+.++ ..+..++.++.|+|||||.+++.++....
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 218 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence 999999999887543 44578999999999999999998765422
Q ss_pred --CCHHHHHHHHHHcCceeeEEEE
Q 012235 425 --KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 425 --~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
...+.+.+.+++.||..+.+..
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~ 242 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHR 242 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEe
Confidence 1244788888999998877654
No 51
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.52 E-value=7.4e-14 Score=143.35 Aligned_cols=121 Identities=16% Similarity=0.272 Sum_probs=101.1
Q ss_pred eEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc---------C-----CccEEEccCCCC------ccC
Q 012235 320 IGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR---------G-----LIPLYVTLNQRL------PFF 376 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r---------g-----~i~~~~~d~~~L------pf~ 376 (467)
+|||+|||+|.++..+++. +..|++ +|+++.+++.++++ | .+.++++|+..+ +++
T Consensus 86 ~VLDlGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 86 TVLDLGCGTGRDVYLASKLVGEHGKVIG--VDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp EEEEESCTTSHHHHHHHHHHTTTCEEEE--EECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred EEEEecCccCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 8999999999999999875 558888 77889999888765 3 588999999887 888
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC--------------------CHHHHHHHHHH
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--------------------DLDDYMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------~~~~~~~~i~~ 436 (467)
+++||+|+++.+++|+.+. ..++.++.|+|||||+|++.++..... ..+++.+++++
T Consensus 164 ~~~fD~V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLSTNK---LALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp TTCEEEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCEEEEEEccchhcCCCH---HHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 9999999999999666554 689999999999999999987655321 23688999999
Q ss_pred cCceeeEEE
Q 012235 437 FRYKKHKWA 445 (467)
Q Consensus 437 ~Gf~~l~W~ 445 (467)
.||..+.+.
T Consensus 241 aGF~~v~~~ 249 (383)
T 4fsd_A 241 AGFRDVRLV 249 (383)
T ss_dssp TTCCCEEEE
T ss_pred CCCceEEEE
Confidence 999877554
No 52
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.52 E-value=6.9e-14 Score=133.54 Aligned_cols=95 Identities=18% Similarity=0.117 Sum_probs=83.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
+|||+|||+|.++..+++. +..+++ +|+++.+++.+.++. .+.++++|+..++ ++++||+|+++.+++|+.+
T Consensus 36 ~vLdiG~G~G~~~~~l~~~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~-- 110 (259)
T 2p35_A 36 NGYDLGCGPGNSTELLTDRYGVNVITG--IDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPD-- 110 (259)
T ss_dssp SEEEETCTTTHHHHHHHHHHCTTSEEE--EESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTT--
T ss_pred EEEEecCcCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCCC--
Confidence 8999999999999999988 788998 778899999988763 4889999999988 7899999999999955544
Q ss_pred hHHHHHHHHHhccCCCcEEEEEec
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
...++.++.++|||||.+++..+
T Consensus 111 -~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 111 -HLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp -HHHHHHHHGGGEEEEEEEEEEEE
T ss_pred -HHHHHHHHHHhcCCCeEEEEEeC
Confidence 36899999999999999999865
No 53
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.52 E-value=7.8e-14 Score=136.68 Aligned_cols=132 Identities=10% Similarity=0.053 Sum_probs=103.0
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sF 380 (467)
.+..+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++++|+..+++ +++|
T Consensus 16 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~f 90 (284)
T 3gu3_A 16 TVWKITKPV--HIVDYGCGYGYLGLVLMPLLPEGSKYTG--IDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKY 90 (284)
T ss_dssp TTSCCCSCC--EEEEETCTTTHHHHHHTTTSCTTCEEEE--EESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCE
T ss_pred HHhccCCCC--eEEEecCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCe
Confidence 333455555 8999999999999999987 578888 77788888877654 2 37899999999888 5799
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc---------CCC--------------------------
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC---------NKK-------------------------- 425 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~---------~~~-------------------------- 425 (467)
|+|++..+++|+.+. ..++.++.|+|||||++++.++.. ...
T Consensus 91 D~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (284)
T 3gu3_A 91 DIAICHAFLLHMTTP---ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDG 167 (284)
T ss_dssp EEEEEESCGGGCSSH---HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCT
T ss_pred eEEEECChhhcCCCH---HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccc
Confidence 999999999777655 689999999999999999987651 000
Q ss_pred -CHHHHHHHHHHcCceeeEEEEcc
Q 012235 426 -DLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 426 -~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
....+.+++++.||..+......
T Consensus 168 ~~~~~l~~~l~~aGF~~v~~~~~~ 191 (284)
T 3gu3_A 168 NIGMKIPIYLSELGVKNIECRVSD 191 (284)
T ss_dssp TGGGTHHHHHHHTTCEEEEEEECC
T ss_pred cHHHHHHHHHHHcCCCeEEEEEcC
Confidence 11256778899999888765443
No 54
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.51 E-value=8.5e-14 Score=134.77 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=101.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||||||+|.++..+++. +..+++ +|+++.+++.++++ + .+.++.+|...+++++++||+|+
T Consensus 35 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 110 (276)
T 3mgg_A 35 YPPGA--KVLEAGCGIGAQTVILAKNNPDAEITS--IDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIF 110 (276)
T ss_dssp CCTTC--EEEETTCTTSHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEE
T ss_pred CCCCC--eEEEecCCCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEE
Confidence 44555 8999999999999999988 678888 77788888877654 2 37889999999999999999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC------C----------------------CCHHHHHHHHHH
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN------K----------------------KDLDDYMYMFLQ 436 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~------~----------------------~~~~~~~~~i~~ 436 (467)
+..+++|+.+. ..++.++.++|||||++++.++... . .....+.+++++
T Consensus 111 ~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 111 VCFVLEHLQSP---EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQE 187 (276)
T ss_dssp EESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHH
T ss_pred EechhhhcCCH---HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 99999777665 5899999999999999999764221 0 012367778999
Q ss_pred cCceeeEEE
Q 012235 437 FRYKKHKWA 445 (467)
Q Consensus 437 ~Gf~~l~W~ 445 (467)
.||+.+...
T Consensus 188 aGf~~v~~~ 196 (276)
T 3mgg_A 188 SGFEKIRVE 196 (276)
T ss_dssp TTCEEEEEE
T ss_pred CCCCeEEEe
Confidence 999877654
No 55
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.51 E-value=1e-13 Score=132.50 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=107.5
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc---CC--------------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR---GL-------------------------------- 362 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r---g~-------------------------------- 362 (467)
.+|||+|||+|.++..+++.+. .|++ +|+++.+++.++++ ..
T Consensus 58 ~~vLDlGcG~G~~~~~l~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (265)
T 2i62_A 58 ELLIDIGSGPTIYQLLSACESFTEIIV--SDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA 135 (265)
T ss_dssp EEEEEESCTTCCGGGTTGGGTEEEEEE--EESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHhhcccCeEEE--ecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence 4899999999999999998887 7888 77888888887653 11
Q ss_pred c-cEEEccCCCCc-cCC---CccceEEeccccccccch-hhHHHHHHHHHhccCCCcEEEEEeccc-------------C
Q 012235 363 I-PLYVTLNQRLP-FFD---NTMDLIHTTGFMDGWLDM-LLLDFILFDWDRILRPGGLLWIDRFFC-------------N 423 (467)
Q Consensus 363 i-~~~~~d~~~Lp-f~d---~sFDlVis~~~L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~-------------~ 423 (467)
+ .++++|+...+ +++ ++||+|++..++++..+. .....++.++.|+|||||+|++.+... .
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 215 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL 215 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence 5 78888887764 355 899999999999643321 235789999999999999999976432 1
Q ss_pred CCCHHHHHHHHHHcCceeeEEEEccCC------CCceEEEEEeecCCCC
Q 012235 424 KKDLDDYMYMFLQFRYKKHKWAISPKS------KDEVYLSALLEKPPRA 466 (467)
Q Consensus 424 ~~~~~~~~~~i~~~Gf~~l~W~~~~k~------~devyl~avlqKP~~~ 466 (467)
.-..+.+.+++++.||..+.+...... .....+..+.+|+.++
T Consensus 216 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~ 264 (265)
T 2i62_A 216 PLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGRS 264 (265)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC--
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccccC
Confidence 124558999999999999988765421 1122444567888654
No 56
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.51 E-value=1.1e-13 Score=129.40 Aligned_cols=136 Identities=12% Similarity=0.014 Sum_probs=101.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHcC-----------CccEEEccCCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALRG-----------LIPLYVTLNQRL 373 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~rg-----------~i~~~~~d~~~L 373 (467)
+.+.+...++. +|||+|||+|.++..+++++ ..+++ +|+++.+++.++++- .+.++++|+..+
T Consensus 21 l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 21 VVAALKQSNAR--RVIDLGCGQGNLLKILLKDSFFEQITG--VDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHTTCC--EEEEETCTTCHHHHHHHHCTTCSEEEE--EESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHHHHHhhCCCCEEEE--EECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 34444444555 89999999999999999985 57888 777888988887641 478999998888
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC--------------C-----CCHHHHH---
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN--------------K-----KDLDDYM--- 431 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~--------------~-----~~~~~~~--- 431 (467)
+..+++||+|++..+++|+.++ .+..++.++.++|||||.+++...... . -..+++.
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (217)
T 3jwh_A 97 DKRFHGYDAATVIEVIEHLDLS-RLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWA 175 (217)
T ss_dssp CGGGCSCSEEEEESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHH
T ss_pred cccCCCcCEEeeHHHHHcCCHH-HHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHH
Confidence 8878999999999999766433 457899999999999998777543210 0 1334555
Q ss_pred -HHHHHcCceeeEEEEc
Q 012235 432 -YMFLQFRYKKHKWAIS 447 (467)
Q Consensus 432 -~~i~~~Gf~~l~W~~~ 447 (467)
+++++.||......++
T Consensus 176 ~~~~~~~Gf~v~~~~~g 192 (217)
T 3jwh_A 176 NKITERFAYNVQFQPIG 192 (217)
T ss_dssp HHHHHHSSEEEEECCCS
T ss_pred HHHHHHcCceEEEEecC
Confidence 7788888866544333
No 57
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.51 E-value=3e-13 Score=123.28 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=94.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc-cCCCccceEEe
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP-FFDNTMDLIHT 385 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp-f~d~sFDlVis 385 (467)
+.++. +|||+|||+|.++..+++++.+|++ +|+++.|++.++++ + .+.+++++...++ +.+++||+|++
T Consensus 20 ~~~~~--~vLDiGcG~G~~~~~la~~~~~v~~--vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 20 LDDES--IVVDATMGNGNDTAFLAGLSKKVYA--FDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CCTTC--EEEESCCTTSHHHHHHHTTSSEEEE--EESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCC--EEEEEcCCCCHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 44555 8999999999999999999999999 77888888887653 3 4778887777754 45789999998
Q ss_pred ccccccc------cchhhHHHHHHHHHhccCCCcEEEEEecccCCCC---HHHHHHHHHH---cCceeeEEEEccCCCCc
Q 012235 386 TGFMDGW------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD---LDDYMYMFLQ---FRYKKHKWAISPKSKDE 453 (467)
Q Consensus 386 ~~~L~h~------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~---~~~~~~~i~~---~Gf~~l~W~~~~k~~de 453 (467)
+....+. ........++.++.|+|||||.+++..+...... .+.+.+.+.. .+|...++......+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 175 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTP 175 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCC
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCC
Confidence 7433222 0122346789999999999999999877654321 2244444444 45777777766543333
Q ss_pred eEEE
Q 012235 454 VYLS 457 (467)
Q Consensus 454 vyl~ 457 (467)
-++.
T Consensus 176 ~~~~ 179 (185)
T 3mti_A 176 PFLV 179 (185)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 3443
No 58
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.50 E-value=2.9e-13 Score=126.25 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=102.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEe
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.+..+....++. +|||+|||+|.++..++ ..++++|++.. .+.++++|+..+++++++||+|++
T Consensus 58 ~~~~l~~~~~~~--~vLDiG~G~G~~~~~l~---~~v~~~D~s~~-----------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 58 IARDLRQRPASL--VVADFGCGDCRLASSIR---NPVHCFDLASL-----------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHTSCTTS--CEEEETCTTCHHHHHCC---SCEEEEESSCS-----------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHhccCCCC--eEEEECCcCCHHHHHhh---ccEEEEeCCCC-----------CceEEEeccccCCCCCCCEeEEEE
Confidence 333333344444 89999999999999884 67888666543 478999999999998999999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
..++ |+.+ ...++.++.++|+|||.+++.++.......+.+.+++++.||..+...... ..+...+++|+
T Consensus 122 ~~~l-~~~~---~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~~k~ 191 (215)
T 2zfu_A 122 CLSL-MGTN---IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTN----SHFFLFDFQKT 191 (215)
T ss_dssp ESCC-CSSC---HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCS----TTCEEEEEEEC
T ss_pred ehhc-cccC---HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCC----CeEEEEEEEec
Confidence 9999 6543 368999999999999999998877655567799999999999887643321 12334456665
No 59
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.50 E-value=2.9e-13 Score=126.08 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=101.1
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC--CccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR--LPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~--Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.+|||+|||+|.++..+++.+..+++ +|+++.+++.+.++. ..++.+|+.. +++++++||+|++..+++|+.+.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~~~~~--~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~- 109 (230)
T 3cc8_A 34 KEVLDIGCSSGALGAAIKENGTRVSG--IEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP- 109 (230)
T ss_dssp SEEEEETCTTSHHHHHHHTTTCEEEE--EESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CcEEEeCCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH-
Confidence 38999999999999999998888888 777888888887654 4788888776 66778999999999999777665
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecccC---------------------------CCCHHHHHHHHHHcCceeeEEEEc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFCN---------------------------KKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~~---------------------------~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
..++.++.++|+|||.+++..+... .-..+++.+++++.||+.+.+...
T Consensus 110 --~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 110 --WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp --HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 5899999999999999999764311 013568999999999988877643
No 60
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.50 E-value=1e-13 Score=130.34 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=99.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHH
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
+|||+|||+|.++..+++. ++ +|+++.+++.+.++ .+.++.+++..+++++++||+|++..+++|+.+. .
T Consensus 50 ~vLDiG~G~G~~~~~l~~~----~~--vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---~ 119 (219)
T 1vlm_A 50 RGVEIGVGTGRFAVPLKIK----IG--VEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP---E 119 (219)
T ss_dssp CEEEETCTTSTTHHHHTCC----EE--EESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH---H
T ss_pred cEEEeCCCCCHHHHHHHHH----hc--cCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH---H
Confidence 8999999999999999876 44 88899999999887 5788999999999888999999999999777554 6
Q ss_pred HHHHHHHhccCCCcEEEEEecccCC---------------------CCHHHHHHHHHHcCceeeEEEEc
Q 012235 400 FILFDWDRILRPGGLLWIDRFFCNK---------------------KDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~~~~---------------------~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
.++.++.++|+|||.+++..+.... -..+.+.+++++.||+.+.....
T Consensus 120 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 8999999999999999998654311 14568899999999998876544
No 61
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.50 E-value=2.3e-13 Score=132.78 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=97.9
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
+.+...++. +|||+|||+|.++..+++.|..|++ +|+++.+++.++++ + .+.++++|+..+++ +++||+|
T Consensus 114 ~~~~~~~~~--~vLD~GcG~G~~~~~l~~~g~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i 188 (286)
T 3m70_A 114 DAAKIISPC--KVLDLGCGQGRNSLYLSLLGYDVTS--WDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFI 188 (286)
T ss_dssp HHHHHSCSC--EEEEESCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEE
T ss_pred HHhhccCCC--cEEEECCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEE
Confidence 344444454 8999999999999999999999998 67778888777643 3 47889999988887 8899999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-----------CHHHHHHHHHHcCceeeEEE
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-----------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-----------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+++.+++|+ +......++.++.++|||||.+++.......+ ..+++.+.+.. |..+.+.
T Consensus 189 ~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 189 VSTVVFMFL-NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp EECSSGGGS-CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred EEccchhhC-CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 999999555 44446789999999999999988865543221 13356666654 6666664
No 62
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.50 E-value=3.4e-13 Score=124.37 Aligned_cols=138 Identities=12% Similarity=0.018 Sum_probs=103.8
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.++++|+..+++++++||+|+++.. |+ .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~-~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTA--VDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HL-P 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEE--ECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CC-C
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEE--EECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cC-C
Confidence 7999999999999999999998988 77888888877654 3 478889999999888899999999643 55 3
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecccCC--------------CCHHHHHHHHHHcCceeeEEEEccC----CCC----
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFFCNK--------------KDLDDYMYMFLQFRYKKHKWAISPK----SKD---- 452 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------------~~~~~~~~~i~~~Gf~~l~W~~~~k----~~d---- 452 (467)
......++.++.++|||||.+++.++.... -+.+++.++++ ||+.+....... +..
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g~~~~~~ 184 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEGAYHQGK 184 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCSSSSCCE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCCCCcccH
Confidence 334678999999999999999998754321 13457777777 898776654332 111
Q ss_pred ceEEEEEeecCC
Q 012235 453 EVYLSALLEKPP 464 (467)
Q Consensus 453 evyl~avlqKP~ 464 (467)
..++....+|+.
T Consensus 185 ~~~i~~~~~~~~ 196 (202)
T 2kw5_A 185 AALIQLLGQKLE 196 (202)
T ss_dssp EEEEEEEECCCS
T ss_pred HHHHHHHHHhhh
Confidence 236666566654
No 63
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.50 E-value=2.1e-13 Score=135.25 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=101.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.+.++. +|||||||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|...+| ++||+|
T Consensus 87 ~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v 159 (318)
T 2fk8_A 87 DLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIG--LTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRI 159 (318)
T ss_dssp CCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCCcC--EEEEEcccchHHHHHHHHHCCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEE
Confidence 344555 8999999999999999988 888988 77888888888764 2 3788889987774 789999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC--------------------------------CCHHHHH
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK--------------------------------KDLDDYM 431 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~--------------------------------~~~~~~~ 431 (467)
++..+++|+.. .....++.++.++|||||.+++.++.... ...+.+.
T Consensus 160 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 238 (318)
T 2fk8_A 160 VSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMV 238 (318)
T ss_dssp EEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHH
T ss_pred EEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHH
Confidence 99999977643 23578999999999999999998765432 1345788
Q ss_pred HHHHHcCceeeEEEE
Q 012235 432 YMFLQFRYKKHKWAI 446 (467)
Q Consensus 432 ~~i~~~Gf~~l~W~~ 446 (467)
+++++.||+.+.+..
T Consensus 239 ~~l~~aGf~~~~~~~ 253 (318)
T 2fk8_A 239 EHGEKAGFTVPEPLS 253 (318)
T ss_dssp HHHHHTTCBCCCCEE
T ss_pred HHHHhCCCEEEEEEe
Confidence 889999998887654
No 64
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.48 E-value=7.9e-14 Score=136.14 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=90.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCc-
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLP- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lp- 374 (467)
.+...+...++. +|||||||+|.++..+++.+..|++ +|+++.+++.++++ ..+.+..++...++
T Consensus 48 ~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (293)
T 3thr_A 48 WLLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGFSVTS--VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123 (293)
T ss_dssp HHHHHHHHTTCC--EEEETTCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHhcccCCC--EEEEecCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence 344555555555 8999999999999999999999988 77888998888653 12567888988888
Q ss_pred --cCCCccceEEec-cccccccc----hhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 375 --FFDNTMDLIHTT-GFMDGWLD----MLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 375 --f~d~sFDlVis~-~~L~h~~~----~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++++||+|++. .+++|+.+ ......++.++.|+|||||++++..
T Consensus 124 ~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 788999999998 89988877 3445799999999999999999875
No 65
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.48 E-value=3.1e-13 Score=131.45 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=102.7
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc-CCCccceE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF-FDNTMDLI 383 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf-~d~sFDlV 383 (467)
+.++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.+.++ + .+.++++|+..+++ ++++||+|
T Consensus 62 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 62 TKRGD--SVLDLGCGKGGDLLKYERAGIGEYYG--VDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CCTTC--EEEEETCTTTTTHHHHHHHTCSEEEE--EESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCC--eEEEECCCCCHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEE
Confidence 34554 899999999999999988865 8888 77888888887654 2 26889999999888 68899999
Q ss_pred Eeccccccc-cchhhHHHHHHHHHhccCCCcEEEEEecccC---------------------------C-----------
Q 012235 384 HTTGFMDGW-LDMLLLDFILFDWDRILRPGGLLWIDRFFCN---------------------------K----------- 424 (467)
Q Consensus 384 is~~~L~h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~---------------------------~----------- 424 (467)
++..+++|. ........++.++.++|||||.+++..+... .
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 999999442 3444467899999999999999998764310 0
Q ss_pred ----------CCHHHHHHHHHHcCceeeEEEE
Q 012235 425 ----------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 425 ----------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
-..+++.+++++.||+.+.+..
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~ 249 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKG 249 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 0346899999999999888764
No 66
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.47 E-value=2.5e-13 Score=131.07 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=86.3
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHH
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.++++....++++|+..+++++++||+|++..++.|+.++ ..
T Consensus 57 ~vLDiGcG~G~~~~~l~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~--~~ 132 (260)
T 2avn_A 57 RVLDLGGGTGKWSLFLQERGFEVVL--VDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN--KD 132 (260)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEE--EESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC--HH
T ss_pred eEEEeCCCcCHHHHHHHHcCCeEEE--EeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc--HH
Confidence 8999999999999999999999988 7788999999887754348899999999989999999999888788655 47
Q ss_pred HHHHHHHhccCCCcEEEEEecc
Q 012235 400 FILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~ 421 (467)
.++.++.++|||||.+++..+.
T Consensus 133 ~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 133 KAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHcCCCeEEEEEeCC
Confidence 8999999999999999997654
No 67
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.46 E-value=9.7e-14 Score=143.18 Aligned_cols=128 Identities=11% Similarity=0.147 Sum_probs=102.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEE-----EccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLY-----VTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~-----~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||||||+|.++..+++++..|+| +|+++.+++.+++++. +.. .++...+++++++||+|++..
T Consensus 105 ~~~~~--~VLDiGcG~G~~~~~l~~~g~~v~g--vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~fD~I~~~~ 179 (416)
T 4e2x_A 105 TGPDP--FIVEIGCNDGIMLRTIQEAGVRHLG--FEPSSGVAAKAREKGI-RVRTDFFEKATADDVRRTEGPANVIYAAN 179 (416)
T ss_dssp CSSSC--EEEEETCTTTTTHHHHHHTTCEEEE--ECCCHHHHHHHHTTTC-CEECSCCSHHHHHHHHHHHCCEEEEEEES
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHcCCcEEE--ECCCHHHHHHHHHcCC-CcceeeechhhHhhcccCCCCEEEEEECC
Confidence 34444 8999999999999999999999998 8889999999988753 222 345566777789999999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------------CC----CCHHHHHHHHHHcCceeeEEEEcc
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------------NK----KDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------------~~----~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
+++|+.+. ..++.++.|+|||||++++..+.. .. ...+.+.+++++.||+.+.....+
T Consensus 180 vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 180 TLCHIPYV---QSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp CGGGCTTH---HHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred hHHhcCCH---HHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence 99888654 689999999999999999976431 01 134589999999999988776543
No 68
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.45 E-value=1.6e-12 Score=118.20 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=99.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccccccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.++. +|||+|||+|.++..+++++ .|++ +|+++.|++. ...+.++++|+.. ++++++||+|+++..+ ++.
T Consensus 22 ~~~~--~vLD~GcG~G~~~~~l~~~~-~v~g--vD~s~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~-~~~ 91 (170)
T 3q87_B 22 LEMK--IVLDLGTSTGVITEQLRKRN-TVVS--TDLNIRALES---HRGGNLVRADLLC-SINQESVDVVVFNPPY-VPD 91 (170)
T ss_dssp CCSC--EEEEETCTTCHHHHHHTTTS-EEEE--EESCHHHHHT---CSSSCEEECSTTT-TBCGGGCSEEEECCCC-BTT
T ss_pred CCCC--eEEEeccCccHHHHHHHhcC-cEEE--EECCHHHHhc---ccCCeEEECChhh-hcccCCCCEEEECCCC-ccC
Confidence 4444 89999999999999999999 8888 7778888877 4458899999877 6667999999999887 432
Q ss_pred chh-------hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEE
Q 012235 394 DML-------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYL 456 (467)
Q Consensus 394 ~~~-------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl 456 (467)
++. ....++.++.+.| |||.+++..... ...+.+.+++++.||+...........+.+|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~ 158 (170)
T 3q87_B 92 TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--NRPKEVLARLEERGYGTRILKVRKILGETVYI 158 (170)
T ss_dssp CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--GCHHHHHHHHHHTTCEEEEEEEEECSSSEEEE
T ss_pred CccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--CCHHHHHHHHHHCCCcEEEEEeeccCCceEEE
Confidence 221 1246888999999 999999976443 34557889999999988776655444454444
No 69
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.45 E-value=5.7e-13 Score=130.51 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=93.0
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc---------------------C---------------C
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR---------------------G---------------L 362 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r---------------------g---------------~ 362 (467)
+|||||||+|.++..++.. +..|+| +|+|+.|++.++++ + .
T Consensus 74 ~vLDiGcG~G~~~~l~~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (289)
T 2g72_A 74 TLIDIGSGPTVYQLLSACSHFEDITM--TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 151 (289)
T ss_dssp EEEEETCTTCCGGGTTGGGGCSEEEE--ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred eEEEECCCcChHHHHhhccCCCeEEE--eCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence 8999999999965544443 678888 78899999877652 1 0
Q ss_pred ccEEEccCCC-Ccc-----CCCccceEEeccccccccch-hhHHHHHHHHHhccCCCcEEEEEeccc-------------
Q 012235 363 IPLYVTLNQR-LPF-----FDNTMDLIHTTGFMDGWLDM-LLLDFILFDWDRILRPGGLLWIDRFFC------------- 422 (467)
Q Consensus 363 i~~~~~d~~~-Lpf-----~d~sFDlVis~~~L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~------------- 422 (467)
+.++.+|+.. +|+ ++++||+|+++.+++|.... .....++.++.|+|||||+|++.....
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~ 231 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 231 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeee
Confidence 2355568776 654 35679999999999553321 235789999999999999999974321
Q ss_pred CCCCHHHHHHHHHHcCceeeEEEEcc
Q 012235 423 NKKDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 423 ~~~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
..-+.+.+.+++++.||+.+.+....
T Consensus 232 ~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 232 VPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 11245689999999999988876544
No 70
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.44 E-value=5.6e-13 Score=123.77 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=84.0
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.+|||+|||+|.++..+ +. ++++ +|+++.+++.++++. .+.++++|...+|+++++||+|++..+++|+.+.
T Consensus 38 ~~vLdiG~G~G~~~~~l---~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 111 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL---PYPQKVG--VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV- 111 (211)
T ss_dssp SEEEEETCTTCHHHHHC---CCSEEEE--ECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH-
T ss_pred CeEEEECCCCCHhHHhC---CCCeEEE--EeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH-
Confidence 38999999999999988 66 8888 788899999988773 5789999999999989999999999999777654
Q ss_pred hHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..++.++.|+|||||.+++.++..
T Consensus 112 --~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 112 --ERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp --HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred --HHHHHHHHHHcCCCCEEEEEecCC
Confidence 689999999999999999987654
No 71
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3.3e-13 Score=132.86 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=81.8
Q ss_pred ceEEEECCCccHHHHHHh---hCCCEEEEEecCCCHHHHHHHHHc--------CCccEEEccCCCCccCC------Cccc
Q 012235 319 RIGLDFGVGTGTFAARMR---EQNVTIVSTALNLGAPFNEMIALR--------GLIPLYVTLNQRLPFFD------NTMD 381 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La---~~g~~V~gvdiDiS~~~l~~a~~r--------g~i~~~~~d~~~Lpf~d------~sFD 381 (467)
.+|||||||+|.++..++ ..+..|++ +|+++.+++.++++ ..+.++++|+..+++.+ ++||
T Consensus 38 ~~vLDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 38 KLLVDVGCGPGTATLQMAQELKPFEQIIG--SDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp SEEEEETCTTTHHHHHHHHHSSCCSEEEE--EESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEE--EeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 389999999999999999 45788888 77888888888653 24889999999999877 8999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+++.+++|+ + ...++.++.|+|||||.|++.+
T Consensus 116 ~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 116 MITAVECAHWF-D---FEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp EEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeHhhHHHHh-C---HHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999665 3 4789999999999999999843
No 72
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=134.42 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=96.0
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc------------------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR------------------------------------ 360 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r------------------------------------ 360 (467)
.+|||||||+|.++..++++ +..|+| +|+++.+++.++++
T Consensus 48 ~~VLDiGCG~G~~~~~la~~~~~~~v~g--vDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 48 RDVLDLGCNVGHLTLSIACKWGPSRMVG--LDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp SEEEEESCTTCHHHHHHHHHTCCSEEEE--EESCHHHHHHHHHTC-----------------------------------
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 38999999999999999988 678888 77778888888764
Q ss_pred ----------------------------CCccEEEccCCCCc-----cCCCccceEEecccccccc---chhhHHHHHHH
Q 012235 361 ----------------------------GLIPLYVTLNQRLP-----FFDNTMDLIHTTGFMDGWL---DMLLLDFILFD 404 (467)
Q Consensus 361 ----------------------------g~i~~~~~d~~~Lp-----f~d~sFDlVis~~~L~h~~---~~~~l~~~L~e 404 (467)
..+.++++|....+ +.+++||+|+|..++.|+. .+..+..++.+
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 24778888876544 5678999999999984432 44457899999
Q ss_pred HHhccCCCcEEEEEecccC-----C--------------CCHHHHHHHHHH--cCceeeEEEEc
Q 012235 405 WDRILRPGGLLWIDRFFCN-----K--------------KDLDDYMYMFLQ--FRYKKHKWAIS 447 (467)
Q Consensus 405 l~RvLKPGG~LiI~~~~~~-----~--------------~~~~~~~~~i~~--~Gf~~l~W~~~ 447 (467)
+.++|||||+|++....+. . -.++.+.+++.. .||+.+.....
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999999643210 0 023467778887 99987765433
No 73
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.44 E-value=7.9e-13 Score=123.48 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=82.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
+|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ ..+.++++|+..+++++++||+|+++.+++ +..
T Consensus 41 ~vLDlG~G~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~-~~~ 117 (227)
T 1ve3_A 41 KVLDLACGVGGFSFLLEDYGFEVVG--VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV-HFE 117 (227)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG-GCC
T ss_pred eEEEEeccCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH-hCC
Confidence 8999999999999999999888888 67778888877654 348899999999888889999999999852 223
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
......++.++.++|||||.+++.++.
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 333578999999999999999987653
No 74
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.42 E-value=1.1e-12 Score=126.77 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=96.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHH------HHHHHHHc-------CCccEEEcc-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAP------FNEMIALR-------GLIPLYVTL- 369 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~------~l~~a~~r-------g~i~~~~~d- 369 (467)
+.+.+.+.++. +|||||||+|.++..++++ | ..|+++| +++. +++.+.++ ..+.++.+|
T Consensus 35 l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD--~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 35 IAEAWQVKPGE--KILEIGCGQGDLSAVLADQVGSSGHVTGID--IASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHTCCTTC--EEEEESCTTSHHHHHHHHHHCTTCEEEEEC--SSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEE--CCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 33445566666 8999999999999999987 4 7888855 4443 66666543 237788887
Q ss_pred --CCCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-----------------------
Q 012235 370 --NQRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----------------------- 424 (467)
Q Consensus 370 --~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----------------------- 424 (467)
...+|+++++||+|++..+++|+.+. ..++..+.++++|||.+++.++....
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~---~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASA---NALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAP 187 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCH---HHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSC
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCH---HHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccc
Confidence 56677888999999999999777766 35666677777779999997654321
Q ss_pred ---------CCHHHHHHHHHHcCceeeEEE
Q 012235 425 ---------KDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 425 ---------~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
...+.+.+++++.||+.+...
T Consensus 188 ~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~ 217 (275)
T 3bkx_A 188 SDVANIRTLITPDTLAQIAHDNTWTYTAGT 217 (275)
T ss_dssp CTTCSCCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred cccccccccCCHHHHHHHHHHCCCeeEEEE
Confidence 123467778888888877654
No 75
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.42 E-value=6e-13 Score=125.93 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=94.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccC-CCCccC-CCccceEEecccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLN-QRLPFF-DNTMDLIHTTGFM 389 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~-~~Lpf~-d~sFDlVis~~~L 389 (467)
+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.+.++. .+.++++|. ..+|++ +++||+|+++...
T Consensus 46 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~ 121 (226)
T 3m33_A 46 LTPQT--RVLEAGCGHGPDAARFGPQAARWAA--YDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGP 121 (226)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCC
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCH
Confidence 34454 8999999999999999999999998 778899999998774 488999998 678888 8999999998322
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
..++.++.++|||||.++... .....+.+.+.+.+.||......
T Consensus 122 ---------~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 122 ---------TSVILRLPELAAPDAHFLYVG---PRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp ---------SGGGGGHHHHEEEEEEEEEEE---SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred ---------HHHHHHHHHHcCCCcEEEEeC---CcCCHHHHHHHHHHCCCeEEEEE
Confidence 468999999999999998322 12233478889999999876554
No 76
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.42 E-value=8.5e-13 Score=129.79 Aligned_cols=125 Identities=15% Similarity=0.069 Sum_probs=88.6
Q ss_pred ceEEEECCCccHHHHH----HhhC--CCEEEEEecCCCHHHHHHHHHc-----C--CccE--EEccCCCCc------cCC
Q 012235 319 RIGLDFGVGTGTFAAR----MREQ--NVTIVSTALNLGAPFNEMIALR-----G--LIPL--YVTLNQRLP------FFD 377 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~----La~~--g~~V~gvdiDiS~~~l~~a~~r-----g--~i~~--~~~d~~~Lp------f~d 377 (467)
.+|||||||+|.++.. ++.+ ++.+..+.+|.|+.|++.++++ + .+.+ ..++++.++ +++
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence 3899999999976643 3332 4544334489999999988754 2 2233 344554443 568
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC---------------------CCCHHHHHHHHHH
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN---------------------KKDLDDYMYMFLQ 436 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~---------------------~~~~~~~~~~i~~ 436 (467)
++||+|++..+++|+.+. ..++.++.|+|||||.+++...... ....+++.+++++
T Consensus 134 ~~fD~V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (292)
T 2aot_A 134 QKWDFIHMIQMLYYVKDI---PATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 210 (292)
T ss_dssp CCEEEEEEESCGGGCSCH---HHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHH
T ss_pred CceeEEEEeeeeeecCCH---HHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHH
Confidence 899999999999666655 6899999999999999999753321 1134578889999
Q ss_pred cCceeeEEEE
Q 012235 437 FRYKKHKWAI 446 (467)
Q Consensus 437 ~Gf~~l~W~~ 446 (467)
.||+......
T Consensus 211 aGf~~~~~~~ 220 (292)
T 2aot_A 211 LGLKYECYDL 220 (292)
T ss_dssp HTCCEEEEEE
T ss_pred CCCceEEEEe
Confidence 9998776433
No 77
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.42 E-value=5.1e-13 Score=123.33 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=87.0
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccceEEeccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
.++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.++++ ..+.++++|+..+++++++||+|++..+
T Consensus 41 ~~~~--~vLdiGcG~G~~~~~l~~~~~~~v~~--~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 116 (215)
T 2pxx_A 41 RPED--RILVLGCGNSALSYELFLGGFPNVTS--VDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGT 116 (215)
T ss_dssp CTTC--CEEEETCTTCSHHHHHHHTTCCCEEE--EESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESH
T ss_pred CCCC--eEEEECCCCcHHHHHHHHcCCCcEEE--EeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcc
Confidence 4444 899999999999999999876 7888 77888998888765 2478999999999988899999999988
Q ss_pred ccccc------------chhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 389 MDGWL------------DMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 389 L~h~~------------~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+.++. .......++.++.|+|||||.+++.++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 85553 12335789999999999999999987643
No 78
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.40 E-value=6.1e-13 Score=126.55 Aligned_cols=125 Identities=16% Similarity=0.144 Sum_probs=92.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-----CccEEEccCCCC--ccCCCccceEEe-cccc-
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-----LIPLYVTLNQRL--PFFDNTMDLIHT-TGFM- 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-----~i~~~~~d~~~L--pf~d~sFDlVis-~~~L- 389 (467)
+|||||||+|.++..+++.+. .|++ +|+++.|++.++++. .+.++++|+..+ ++++++||+|++ .+.+
T Consensus 63 ~vLDiGcGtG~~~~~l~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~ 140 (236)
T 1zx0_A 63 RVLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 140 (236)
T ss_dssp EEEEECCTTSHHHHHHHTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred eEEEEeccCCHHHHHHHhcCCCeEEE--EcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccc
Confidence 899999999999999988755 6777 888899999887642 277889998888 888999999999 5554
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------CC-----HHHHHHHHHHcCce--eeEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------KD-----LDDYMYMFLQFRYK--KHKWAI 446 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------~~-----~~~~~~~i~~~Gf~--~l~W~~ 446 (467)
.+.......+.++.++.|+|||||+|++.++.... .. .+.....+...||. .+.+.+
T Consensus 141 ~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~i~~~~ 211 (236)
T 1zx0_A 141 EETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRTEV 211 (236)
T ss_dssp GGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCCCceeEEE
Confidence 12222223457899999999999999986543210 11 12445678889997 355543
No 79
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.39 E-value=5.4e-12 Score=118.37 Aligned_cols=128 Identities=14% Similarity=0.023 Sum_probs=98.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~ 378 (467)
.+...+.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++.+|+........
T Consensus 46 ~~l~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~~--vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 46 LTLAALAPRRGE--LLWDIGGGSGSVSVEWCLAGGRAIT--IEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHCCCTTC--EEEEETCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHhcCCCCCC--EEEEecCCCCHHHHHHHHcCCEEEE--EeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 344556666666 8999999999999999999889998 77778888877654 2 47788999887433346
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
.||+|++...+ . .+ ++.++.++|||||.+++..... +....+.+.+++.|++...+...
T Consensus 122 ~~D~v~~~~~~-----~--~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~i~~i~~~ 180 (204)
T 3njr_A 122 LPEAVFIGGGG-----S--QA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLHARHGGQLLRIDIA 180 (204)
T ss_dssp CCSEEEECSCC-----C--HH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCEEEECCcc-----c--HH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHHHhCCCcEEEEEee
Confidence 79999988755 1 35 9999999999999999976532 33447788888889877766544
No 80
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.39 E-value=4.1e-12 Score=117.73 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=100.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCCCccceEEe
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
+.++. +|||+|||+|.++..+++.+. .+++ +|+++.+++.++++ +. +.++.+|.... .+++||+|++
T Consensus 58 ~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~ 131 (205)
T 3grz_A 58 MVKPL--TVADVGTGSGILAIAAHKLGAKSVLA--TDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVA 131 (205)
T ss_dssp CSSCC--EEEEETCTTSHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEE
T ss_pred ccCCC--EEEEECCCCCHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEE
Confidence 44555 899999999999999998865 7888 77788888877653 32 77888887664 4689999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEEEEeecCCC
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLSALLEKPPR 465 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~avlqKP~~ 465 (467)
+..+++ +..++.++.++|||||.+++.++... ..+.+.+.+++.||+.+..... ++ |...+.++|.+
T Consensus 132 ~~~~~~------~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~Gf~~~~~~~~----~~-w~~~~~~~~~~ 198 (205)
T 3grz_A 132 NILAEI------LLDLIPQLDSHLNEDGQVIFSGIDYL--QLPKIEQALAENSFQIDLKMRA----GR-WIGLAISRKHE 198 (205)
T ss_dssp ESCHHH------HHHHGGGSGGGEEEEEEEEEEEEEGG--GHHHHHHHHHHTTEEEEEEEEE----TT-EEEEEEEECC-
T ss_pred CCcHHH------HHHHHHHHHHhcCCCCEEEEEecCcc--cHHHHHHHHHHcCCceEEeecc----CC-EEEEEEecccc
Confidence 988732 35789999999999999999765543 3557888999999988765432 22 44555555543
No 81
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.39 E-value=1.6e-12 Score=127.70 Aligned_cols=109 Identities=8% Similarity=0.033 Sum_probs=84.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc-----CCCccc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF-----FDNTMD 381 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf-----~d~sFD 381 (467)
+.+.+.+.++. +|||||||+|.++..+++++..|++ +|+|+.|++.++++-....+..+...++. .+++||
T Consensus 37 il~~l~l~~g~--~VLDlGcGtG~~a~~La~~g~~V~g--vD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD 112 (261)
T 3iv6_A 37 DIFLENIVPGS--TVAVIGASTRFLIEKALERGASVTV--FDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFD 112 (261)
T ss_dssp HHHTTTCCTTC--EEEEECTTCHHHHHHHHHTTCEEEE--EESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCS
T ss_pred HHHhcCCCCcC--EEEEEeCcchHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHhccceeeeeecccccccccCCCcc
Confidence 44455666666 8999999999999999999999999 78889999999876432233444443332 257899
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+|+++.+++|+... ....++.++.++| |||.++++...
T Consensus 113 ~Vv~~~~l~~~~~~-~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 113 FVLNDRLINRFTTE-EARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp EEEEESCGGGSCHH-HHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred EEEEhhhhHhCCHH-HHHHHHHHHHHhC-cCcEEEEEecc
Confidence 99999999776544 3578999999999 99999997543
No 82
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=1.1e-12 Score=124.83 Aligned_cols=112 Identities=12% Similarity=0.017 Sum_probs=88.1
Q ss_pred HHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC---CccEEEccCCCCccCC----
Q 012235 306 LISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG---LIPLYVTLNQRLPFFD---- 377 (467)
Q Consensus 306 ~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg---~i~~~~~d~~~Lpf~d---- 377 (467)
.+..++. +.++. +|||+|||+|.++..+++.+.+|++ +|+++.+++.++++. .+.++++|+..+++..
T Consensus 46 ~~~~~~~~~~~~~--~vLD~GcG~G~~~~~la~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~ 121 (245)
T 3ggd_A 46 DLPRFELLFNPEL--PLIDFACGNGTQTKFLSQFFPRVIG--LDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHS 121 (245)
T ss_dssp HHHHHTTTSCTTS--CEEEETCTTSHHHHHHHHHSSCEEE--EESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHH
T ss_pred HHHHHhhccCCCC--eEEEEcCCCCHHHHHHHHhCCCEEE--EECCHHHHHHHHHhCcccCceEEECccccccccccccc
Confidence 3444443 34444 8999999999999999999888888 777889999887753 4789999988876432
Q ss_pred -CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 378 -NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 378 -~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..||+|++..+++|+ +......++.++.++|||||++++.++..
T Consensus 122 ~~~~d~v~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 122 EIGDANIYMRTGFHHI-PVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp HHCSCEEEEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred ccCccEEEEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 349999999999544 54446799999999999999999887654
No 83
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.39 E-value=5.4e-12 Score=117.01 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~ 378 (467)
+...+.+.++. +|||+|||+|.++..+++.+ ..+++ +|+++.+++.++++ + .+.++.+|........+
T Consensus 32 ~l~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 32 TLSKLRLQDDL--VMWDIGAGSASVSIEASNLMPNGRIFA--LERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHTTCCTTC--EEEEETCTTCHHHHHHHHHCTTSEEEE--EECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHcCCCCCC--EEEEECCCCCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 44455666666 89999999999999999986 77888 77788888877653 2 47788898865544457
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
+||+|++..++. ....++.++.++|||||.+++..... +..+.+.+.+++.||
T Consensus 108 ~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 108 DPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTL--DTLTKAVEFLEDHGY 160 (204)
T ss_dssp CCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBH--HHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEeccc--ccHHHHHHHHHHCCC
Confidence 899999998873 24689999999999999999976543 234478888999998
No 84
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.38 E-value=2.1e-12 Score=131.47 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=96.8
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC--ccCCCccceEEecc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL--PFFDNTMDLIHTTG 387 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L--pf~d~sFDlVis~~ 387 (467)
++|||||||+|.++..++++ +..+++ +|+ +.+++.+.++ + .+.++.+|+... |++ ++||+|++..
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 181 KRLLDIGGNTGKWATQCVQYNKEVEVTI--VDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp SEEEEESCTTCHHHHHHHHHSTTCEEEE--EEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEE--EeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 48999999999999999985 567777 566 7888877654 2 478999998875 465 7899999999
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCce
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYK 440 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~ 440 (467)
++++|.++. ...+++++.++|||||.+++.++..... ..+++.+++++.||+
T Consensus 257 vlh~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 257 FLDCFSEEE-VISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp CSTTSCHHH-HHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred hhhhCCHHH-HHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 997777653 4688999999999999999987654321 245788899999998
Q ss_pred eeEEE
Q 012235 441 KHKWA 445 (467)
Q Consensus 441 ~l~W~ 445 (467)
.++..
T Consensus 336 ~v~~~ 340 (363)
T 3dp7_A 336 VEEIQ 340 (363)
T ss_dssp ESCCC
T ss_pred EEEEE
Confidence 87653
No 85
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.38 E-value=9.1e-12 Score=126.08 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=101.2
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~ 378 (467)
.+.+.+.++. +|||||||+|.++..++++ +.++++ +|+ +.+++.+.++ + .+.++.+|+...++++.
T Consensus 183 ~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 257 (359)
T 1x19_A 183 LEEAKLDGVK--KMIDVGGGIGDISAAMLKHFPELDSTI--LNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA 257 (359)
T ss_dssp HHHCCCTTCC--EEEEESCTTCHHHHHHHHHCTTCEEEE--EEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC
T ss_pred HHhcCCCCCC--EEEEECCcccHHHHHHHHHCCCCeEEE--Eec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC
Confidence 3344444444 8999999999999999987 567777 566 7777777643 2 38899999988877544
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-------------------C------CCHHHHHHH
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------------------K------KDLDDYMYM 433 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------------------~------~~~~~~~~~ 433 (467)
|+|++..+++||.+. ....++.++.++|||||.+++.++..+ . ...+++.++
T Consensus 258 --D~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~l 334 (359)
T 1x19_A 258 --DAVLFCRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI 334 (359)
T ss_dssp --SEEEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHH
T ss_pred --CEEEEechhccCCHH-HHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHH
Confidence 999999999777653 357899999999999999988774321 1 244589999
Q ss_pred HHHcCceeeEEEEc
Q 012235 434 FLQFRYKKHKWAIS 447 (467)
Q Consensus 434 i~~~Gf~~l~W~~~ 447 (467)
+++.||+.+++...
T Consensus 335 l~~aGf~~v~~~~~ 348 (359)
T 1x19_A 335 LESLGYKDVTMVRK 348 (359)
T ss_dssp HHHHTCEEEEEEEE
T ss_pred HHHCCCceEEEEec
Confidence 99999998876543
No 86
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.38 E-value=7.1e-12 Score=115.21 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=99.9
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCc-cCCCcc
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLP-FFDNTM 380 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lp-f~d~sF 380 (467)
.+.++. +|||+|||+|.++..++++ +..+++ +|+++.+++.++++ ..+.++++|+..++ +.+++|
T Consensus 19 ~~~~~~--~vLDlGcG~G~~~~~l~~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 94 (197)
T 3eey_A 19 FVKEGD--TVVDATCGNGNDTAFLASLVGENGRVFG--FDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPV 94 (197)
T ss_dssp HCCTTC--EEEESCCTTSHHHHHHHHHHCTTCEEEE--ECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCE
T ss_pred cCCCCC--EEEEcCCCCCHHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCc
Confidence 355665 8999999999999999887 257888 78888888887654 23788999988876 667899
Q ss_pred ceEEecccccc------ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCC---HHHHHHHHHH---cCceeeEEEEcc
Q 012235 381 DLIHTTGFMDG------WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD---LDDYMYMFLQ---FRYKKHKWAISP 448 (467)
Q Consensus 381 DlVis~~~L~h------~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~---~~~~~~~i~~---~Gf~~l~W~~~~ 448 (467)
|+|+++..+.. .........++.++.++|||||.+++..+...... .+.+.+.+.. .+|....+....
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc
Confidence 99999875511 11122345799999999999999999876653322 2244444443 357777777766
Q ss_pred CCCCceEEE
Q 012235 449 KSKDEVYLS 457 (467)
Q Consensus 449 k~~devyl~ 457 (467)
.....-|+.
T Consensus 175 ~~~~pp~~~ 183 (197)
T 3eey_A 175 QANCPPILV 183 (197)
T ss_dssp CCSCCCEEE
T ss_pred CccCCCeEE
Confidence 533333443
No 87
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.37 E-value=7.6e-12 Score=124.53 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=97.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..++++ +.++++ +|++ .+++.++++ + .+.++.+|....+++++ ||+|++..+++
T Consensus 168 ~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~ 243 (335)
T 2r3s_A 168 KVLDISASHGLFGIAVAQHNPNAEIFG--VDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH 243 (335)
T ss_dssp EEEEETCTTCHHHHHHHHHCTTCEEEE--EECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGG
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEE--EecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhc
Confidence 8999999999999999987 678888 5566 777766543 2 38899999888777554 99999999997
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
||.+. ....++.++.++|+|||++++.++..... ..+++.+++++.||+.+++..
T Consensus 244 ~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~ 322 (335)
T 2r3s_A 244 HFDVA-TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS 322 (335)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred cCCHH-HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence 77544 35789999999999999999987765421 245888999999999888754
No 88
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.37 E-value=5.7e-12 Score=113.23 Aligned_cols=126 Identities=22% Similarity=0.165 Sum_probs=92.5
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCC-CCccCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQ-RLPFFD 377 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~-~Lpf~d 377 (467)
...+...++. +|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+ ++.++.. .++..+
T Consensus 18 ~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 18 ISALAPKPHE--TLWDIGGGSGSIAIEWLRSTPQTTAVC--FEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHCCCTTE--EEEEESTTTTHHHHHHHTTSSSEEEEE--ECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHhcccCCC--eEEEeCCCCCHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 3445566665 8999999999999999988 667777 78888888888754 2 25 6677753 444433
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
++||+|++..++.| ..++.++.++|||||.+++..+.. +....+.+.+++.|+...+....
T Consensus 93 ~~~D~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTV--ESEQMLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp SCCSEEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSH--HHHHHHHHHHHHHCCEEEEEEEE
T ss_pred CCCCEEEECCcccH-------HHHHHHHHHhcCCCCEEEEEeecc--ccHHHHHHHHHHcCCeeEEEEee
Confidence 89999999999854 258999999999999999877543 22336777888888766554433
No 89
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.37 E-value=3.9e-12 Score=121.58 Aligned_cols=116 Identities=8% Similarity=0.029 Sum_probs=89.5
Q ss_pred eEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC---CCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF---DNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~---d~sFDlVis~~~ 388 (467)
+|||+|||+|.++..++. .+..|++ +|+++.+++.++++ + .+.++++|+..+++. +++||+|++..+
T Consensus 73 ~vLDiG~G~G~~~~~la~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 73 TICDVGAGAGFPSLPIKICFPHLHVTI--VDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (240)
T ss_dssp EEEEECSSSCTTHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred EEEEecCCCCHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence 899999999999999984 4678888 77888888777542 3 378999998887764 689999999763
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
- + +..++.++.++|||||.+++..-....+....+.+.++..||.....
T Consensus 151 ~----~---~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~ 199 (240)
T 1xdz_A 151 A----R---LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENI 199 (240)
T ss_dssp S----C---HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred C----C---HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence 2 2 46899999999999999998653333333446777888899976544
No 90
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.37 E-value=6.8e-12 Score=118.10 Aligned_cols=144 Identities=17% Similarity=0.102 Sum_probs=100.7
Q ss_pred CCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCC-ccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
+.++. +|||+||| +|.++..+++. +..|++ +|+++.+++.++++ + .+.++++|+..+ ++++++||+|+
T Consensus 53 ~~~~~--~vLDlG~G~~G~~~~~la~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 53 LRGGE--VALEIGTGHTAMMALMAEKFFNCKVTA--TEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp CCSSC--EEEEECCTTTCHHHHHHHHHHCCEEEE--EECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred cCCCC--EEEEcCCCHHHHHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence 44555 89999999 99999999998 889999 67778888777643 3 378899986543 45578999999
Q ss_pred eccccccccc----------------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEcc
Q 012235 385 TTGFMDGWLD----------------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISP 448 (467)
Q Consensus 385 s~~~L~h~~~----------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~ 448 (467)
++..+.+..+ ...+..++.++.++|||||.+++...... ...+.+.+.+++.||........
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~- 206 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGYSVKDIKFK- 206 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCCceEEEEec-
Confidence 9876633221 11136789999999999999998654321 23447888899999965554432
Q ss_pred CCCCceEEEEEeecC
Q 012235 449 KSKDEVYLSALLEKP 463 (467)
Q Consensus 449 k~~devyl~avlqKP 463 (467)
....+....+++|+
T Consensus 207 -~g~~~~~~l~f~~~ 220 (230)
T 3evz_A 207 -VGTRWRHSLIFFKG 220 (230)
T ss_dssp -CCC-CEEEEEEECC
T ss_pred -CCCeEEEEEEEecc
Confidence 22344444556665
No 91
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.36 E-value=1.4e-11 Score=119.08 Aligned_cols=133 Identities=13% Similarity=0.134 Sum_probs=97.6
Q ss_pred HHHHHhcCC-CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCc--
Q 012235 306 LISDILAIK-PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLP-- 374 (467)
Q Consensus 306 ~I~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lp-- 374 (467)
.+..++.+. ++. +|||+|||+|.++..+++++. .|++ +|+++.+++.++++ + .+.++++|+..++
T Consensus 39 ll~~~~~~~~~~~--~vLDlG~G~G~~~~~la~~~~~~v~g--vDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~ 114 (259)
T 3lpm_A 39 LLAKFSYLPIRKG--KIIDLCSGNGIIPLLLSTRTKAKIVG--VEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL 114 (259)
T ss_dssp HHHHHCCCCSSCC--EEEETTCTTTHHHHHHHTTCCCEEEE--ECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred HHHHHhcCCCCCC--EEEEcCCchhHHHHHHHHhcCCcEEE--EECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence 344555555 565 899999999999999999865 7888 77788888877653 3 3788999988776
Q ss_pred cCCCccceEEeccccccc-----------------cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 375 FFDNTMDLIHTTGFMDGW-----------------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~-----------------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
+++++||+|+++..+.+. .....++.++.++.++|||||.+++.. ..+...++...+++.
T Consensus 115 ~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~l~~~ 191 (259)
T 3lpm_A 115 IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH---RPERLLDIIDIMRKY 191 (259)
T ss_dssp SCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE---CTTTHHHHHHHHHHT
T ss_pred hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE---cHHHHHHHHHHHHHC
Confidence 457899999998655222 011235679999999999999999954 344556788888888
Q ss_pred CceeeEEE
Q 012235 438 RYKKHKWA 445 (467)
Q Consensus 438 Gf~~l~W~ 445 (467)
||......
T Consensus 192 ~~~~~~~~ 199 (259)
T 3lpm_A 192 RLEPKRIQ 199 (259)
T ss_dssp TEEEEEEE
T ss_pred CCceEEEE
Confidence 88655443
No 92
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.36 E-value=2.9e-12 Score=113.58 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=98.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------cCCCccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--------FFDNTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--------f~d~sFD 381 (467)
+.++. +|||+|||+|.++..+++. +..++++|++. +++. ..+.++++|....+ +++++||
T Consensus 20 ~~~~~--~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 20 FKPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CCTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc----CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 44555 8999999999999999987 36889866553 3322 34788899988877 7778999
Q ss_pred eEEeccccccccch--hh------HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC---C
Q 012235 382 LIHTTGFMDGWLDM--LL------LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK---S 450 (467)
Q Consensus 382 lVis~~~L~h~~~~--~~------l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k---~ 450 (467)
+|+++.++++.... .. ...++.++.++|+|||.+++..+... ....+.+.+... |..+.+..... .
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 167 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--GFDEYLREIRSL-FTKVKVRKPDSSRAR 167 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--THHHHHHHHHHH-EEEEEEECCTTSCTT
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--cHHHHHHHHHHh-hhhEEeecCCccccc
Confidence 99998887332221 00 14789999999999999999776443 344566666665 77776553332 3
Q ss_pred CCceEEEEEeecC
Q 012235 451 KDEVYLSALLEKP 463 (467)
Q Consensus 451 ~devyl~avlqKP 463 (467)
..+.|+.+.-.||
T Consensus 168 ~~~~~~~~~~~~~ 180 (180)
T 1ej0_A 168 SREVYIVATGRKP 180 (180)
T ss_dssp CCEEEEEEEEECC
T ss_pred CceEEEEEccCCC
Confidence 4567877766654
No 93
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.36 E-value=9.3e-13 Score=131.51 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=75.6
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----CC--------ccEEEccC------CCC--ccCCC
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----GL--------IPLYVTLN------QRL--PFFDN 378 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g~--------i~~~~~d~------~~L--pf~d~ 378 (467)
+|||||||+|..+..++.. +.+|+| +|+|+.|++.|+++ +. +.+.+.++ ..+ +++++
T Consensus 51 ~VLDlGCG~G~~l~~~~~~~~~~v~G--iD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 51 KVLAIDFGNGADLEKYFYGEIALLVA--TDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp EEEETTCTTTTTHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred eEEEEecCCcHhHHHHHhcCCCeEEE--EECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 8999999999866665555 578888 88899999988764 21 34667665 333 35678
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+||+|+|.+++++..+.+....++.++.|+|||||+|+++++
T Consensus 129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999999999994333333457999999999999999998765
No 94
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.36 E-value=5.9e-12 Score=125.95 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=96.7
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++++ +..+++ +|+ +.+++.+.++ ..+.+..+|+. .+++. +||+|++..++
T Consensus 171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 171 GHVVDVGGGSGGLLSALLTAHEDLSGTV--LDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CEEEEeCCChhHHHHHHHHHCCCCeEEE--ecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 48999999999999999986 456666 677 7888777643 34889999986 45544 89999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------------CCHHHHHHHHHHcCceeeEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------------KDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------------~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+||.++ ....+++++.++|||||++++.++..+. ...+++.+++++.||+.++...
T Consensus 246 h~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 246 HDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp GGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 777765 3568999999999999999998765433 1345889999999999887654
No 95
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.35 E-value=3.9e-12 Score=121.21 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=80.9
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
.+|||+|||+|.++..+++.|..|++ +|+++.+++.++++ + .+.++++|+..++++ ++||+|++.....++.
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~ 119 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERGYEVVG--LDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF 119 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred CEEEEeCCCCCHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC
Confidence 38999999999999999999999998 77888888877653 3 378999999888764 7899999875443554
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+......++.++.++|||||.+++..
T Consensus 120 ~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 120 DEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 54456899999999999999998864
No 96
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.34 E-value=5.7e-12 Score=127.67 Aligned_cols=131 Identities=21% Similarity=0.125 Sum_probs=97.9
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~s 379 (467)
+.+.+.++. +|||||||+|.++..+++. +..+++ +|+ +.+++.++++ + .+.++.+|+.. +++. .
T Consensus 176 ~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~~~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~ 248 (374)
T 1qzz_A 176 DAYDWSAVR--HVLDVGGGNGGMLAAIALRAPHLRGTL--VEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-T 248 (374)
T ss_dssp HTSCCTTCC--EEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-C
T ss_pred HhCCCCCCC--EEEEECCCcCHHHHHHHHHCCCCEEEE--EeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-C
Confidence 334444444 8999999999999999987 456766 667 7888877653 2 47889998765 3433 4
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec--ccCC----------------------CCHHHHHHHHH
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF--FCNK----------------------KDLDDYMYMFL 435 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~--~~~~----------------------~~~~~~~~~i~ 435 (467)
||+|++..+++||.+.. ...++.++.++|||||++++.++ ..+. ...+++.++++
T Consensus 249 ~D~v~~~~vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 327 (374)
T 1qzz_A 249 ADVVLLSFVLLNWSDED-ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAG 327 (374)
T ss_dssp EEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred CCEEEEeccccCCCHHH-HHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHH
Confidence 99999999997776553 35899999999999999999887 4322 13457888999
Q ss_pred HcCceeeEEEEc
Q 012235 436 QFRYKKHKWAIS 447 (467)
Q Consensus 436 ~~Gf~~l~W~~~ 447 (467)
+.||+.++....
T Consensus 328 ~aGf~~~~~~~~ 339 (374)
T 1qzz_A 328 SAGLALASERTS 339 (374)
T ss_dssp TTTEEEEEEEEE
T ss_pred HCCCceEEEEEC
Confidence 999998876543
No 97
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.34 E-value=1.3e-11 Score=125.76 Aligned_cols=122 Identities=13% Similarity=0.118 Sum_probs=97.2
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++++ +..+++ +|+ +.+++.+.++ +.+.++.+|+. .+++. .||+|++..++
T Consensus 204 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 278 (369)
T 3gwz_A 204 ATAVDIGGGRGSLMAAVLDAFPGLRGTL--LER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVL 278 (369)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCG
T ss_pred cEEEEeCCCccHHHHHHHHHCCCCeEEE--EcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhh
Confidence 48999999999999999987 556766 666 7777777642 34889999987 45555 89999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
++|.+. ....+++++.++|||||++++.++..+.. ..++|.+++++.||+.++...
T Consensus 279 h~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 279 HDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp GGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 666655 34579999999999999999988765441 245788999999999987754
No 98
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.33 E-value=1.5e-11 Score=123.66 Aligned_cols=137 Identities=13% Similarity=0.116 Sum_probs=101.6
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCc-cCCCccceEEeccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLP-FFDNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lp-f~d~sFDlVis~~~ 388 (467)
.+|||||||+|.++..++++ +.++++ +|+ +.+++.+.++ + .+.++.+|....+ +.++.||+|++..+
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQI--WDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEE--EEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCeEEE--EEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 48999999999999999987 556777 555 5566665532 3 3789999988776 24567999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC------------------------CHHHHHHHHHHcCceeeEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK------------------------DLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~------------------------~~~~~~~~i~~~Gf~~l~W 444 (467)
++||.+. ....++.++.++|||||++++.++..+.. ..+++.+++++.||+.+.-
T Consensus 258 lh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 258 LHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp GGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 9777654 35789999999999999999987543221 2447889999999998873
Q ss_pred EEccCCCCceEEEEEeecCCC
Q 012235 445 AISPKSKDEVYLSALLEKPPR 465 (467)
Q Consensus 445 ~~~~k~~devyl~avlqKP~~ 465 (467)
..+ . +...+.+||..
T Consensus 337 ~~g----~--~~l~~a~kp~~ 351 (352)
T 3mcz_A 337 SIG----R--YTLLIGQRSSG 351 (352)
T ss_dssp EET----T--EEEEEEECCCC
T ss_pred ccC----c--eEEEEEecCCC
Confidence 321 1 33445688853
No 99
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.33 E-value=1.2e-11 Score=111.81 Aligned_cols=129 Identities=11% Similarity=0.103 Sum_probs=95.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--C--ccEEEccCCCCccCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--L--IPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~--i~~~~~d~~~Lpf~d 377 (467)
.+.+.+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ + . +.++.+|... ++++
T Consensus 43 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~~~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 117 (194)
T 1dus_A 43 ILVENVVVDKDD--DILDLGCGYGVIGIALADEVKSTTM--ADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp HHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSSEEEE--EESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred HHHHHcccCCCC--eEEEeCCCCCHHHHHHHHcCCeEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECchhc-cccc
Confidence 344555555555 8999999999999999998888998 66778887777653 2 2 6788888776 3457
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
++||+|+++.++ |+. ......++.++.++|+|||.+++..+... ....+.+.+++. |..+.+
T Consensus 118 ~~~D~v~~~~~~-~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~-~~~~~~ 179 (194)
T 1dus_A 118 RKYNKIITNPPI-RAG-KEVLHRIIEEGKELLKDNGEIWVVIQTKQ--GAKSLAKYMKDV-FGNVET 179 (194)
T ss_dssp SCEEEEEECCCS-TTC-HHHHHHHHHHHHHHEEEEEEEEEEEESTH--HHHHHHHHHHHH-HSCCEE
T ss_pred CCceEEEECCCc-ccc-hhHHHHHHHHHHHHcCCCCEEEEEECCCC--ChHHHHHHHHHH-hcceEE
Confidence 899999999887 432 12256899999999999999999876542 233566777766 655554
No 100
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.33 E-value=7.1e-12 Score=116.79 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=95.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-------C----Cccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-------D----NTMD 381 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-------d----~sFD 381 (467)
+.++. +|||+|||+|.++..+++++..|+++|++.... ...+.++++|+...+.. . ++||
T Consensus 23 ~~~g~--~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 23 VRKGD--AVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVD 93 (191)
T ss_dssp SCTTC--EEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEE
T ss_pred CCCCC--EEEEEeecCCHHHHHHHHcCCcEEEEecccccc-------CCCeEEEEccccCHHHHHHHHHHhhcccCCcce
Confidence 45565 899999999999999999988999976654211 12478999998876521 1 4899
Q ss_pred eEEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEcc---CC
Q 012235 382 LIHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISP---KS 450 (467)
Q Consensus 382 lVis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~---k~ 450 (467)
+|+++.... +.......+.++..+.++|||||.|++..+.... ...+...++.. |..+...... ..
T Consensus 94 ~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--~~~~~~~l~~~-F~~v~~~kP~asR~~ 170 (191)
T 3dou_A 94 DVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--TNDFIAIWRKN-FSSYKISKPPASRGS 170 (191)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--HHHHHHHHGGG-EEEEEEECC------
T ss_pred EEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--HHHHHHHHHHh-cCEEEEECCCCccCC
Confidence 999976431 1111122357889999999999999987764332 33566667655 8777664332 25
Q ss_pred CCceEEEEEeecC
Q 012235 451 KDEVYLSALLEKP 463 (467)
Q Consensus 451 ~devyl~avlqKP 463 (467)
..|+|+.+.--|.
T Consensus 171 s~E~y~v~~~~~~ 183 (191)
T 3dou_A 171 SSEIYIMFFGFKA 183 (191)
T ss_dssp CCEEEEEEEEECC
T ss_pred CceEEEEEeeecc
Confidence 6789998765553
No 101
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.33 E-value=9.4e-12 Score=127.10 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=97.0
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
..+|||||||+|.++..++++ +.++++ +|+ +.+++.+.+...+.++.+|+.. |++++ |+|++..+++||.+.
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~ 277 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAIN--FDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDE 277 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHH
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEE--Eeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHH
Confidence 348999999999999999986 455666 666 7777776665668999999876 66654 999999999777765
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCceeeEEEEc
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
. ...+++++.++|||||++++.++..+.. ..++|.+++++.||+.++....
T Consensus 278 ~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 355 (368)
T 3reo_A 278 H-CLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASC 355 (368)
T ss_dssp H-HHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred H-HHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence 3 4689999999999999999987654321 1347889999999998876544
No 102
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.33 E-value=1.6e-11 Score=116.48 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=88.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHH----HHHHHHcCCccEEEccCCC---CccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPF----NEMIALRGLIPLYVTLNQR---LPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~----l~~a~~rg~i~~~~~d~~~---Lpf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..+++. +..|++ +|+++.+ ++.+..+..+.++++|+.. +++.+++||+
T Consensus 75 ~~~~~--~vLDlG~G~G~~~~~la~~~g~~~~v~g--vD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 75 IKPGA--KVLYLGAASGTTVSHVSDIVGPDGLVYA--VEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEE--ECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred CCCCC--EEEEEcccCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEE
Confidence 44555 8999999999999999987 367888 6777654 4455555568889999877 4556789999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc---CCCCHH----HHHHHHHHcCceeeEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC---NKKDLD----DYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~---~~~~~~----~~~~~i~~~Gf~~l~W~~ 446 (467)
|++.... ......++.++.++|||||.+++..... ...... ...+++++.||+.+....
T Consensus 151 V~~~~~~-----~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 216 (233)
T 2ipx_A 151 IFADVAQ-----PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLT 216 (233)
T ss_dssp EEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEE
T ss_pred EEEcCCC-----ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence 9996551 2222456889999999999999964431 111111 115677788998887443
No 103
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.32 E-value=1.1e-11 Score=116.07 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=89.9
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d~sFDlVis~~~L 389 (467)
+|||||||+|.++..+++. +..++| +|+++.+++.+.++ + .+.++.+|+..++ +++++||+|++++..
T Consensus 44 ~vLDiGcG~G~~~~~la~~~p~~~v~g--vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 44 IHVEVGSGKGAFVSGMAKQNPDINYIG--IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred eEEEEccCcCHHHHHHHHHCCCCCEEE--EEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 8999999999999999987 567888 77788888877643 3 4789999998887 778899999999765
Q ss_pred ccccchh------hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 390 DGWLDML------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 390 ~h~~~~~------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+|.... ....++.++.++|||||.+++.+.. .+..+...+.++..||....
T Consensus 122 -~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 122 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTCEEEE
T ss_pred -CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHHCCCeeee
Confidence 443210 1247999999999999999996521 11123566777888887654
No 104
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.31 E-value=2.9e-11 Score=114.75 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=89.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----CCccEEEccCCC----CccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQR----LPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~----Lpf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..+++. + ..|++ +|+++.+++.+.++ ..+.++.+|+.. +++. ++||+
T Consensus 72 ~~~~~--~VLDlGcG~G~~~~~la~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~ 146 (230)
T 1fbn_A 72 IKRDS--KILYLGASAGTTPSHVADIADKGIVYA--IEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDV 146 (230)
T ss_dssp CCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEE--EESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEE
T ss_pred CCCCC--EEEEEcccCCHHHHHHHHHcCCcEEEE--EECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEE
Confidence 34454 8999999999999999987 4 67888 77888888877653 347788899887 6665 78999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc-cCCCC------H-HHHHHHHHHcCceeeEEEEc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF-CNKKD------L-DDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-~~~~~------~-~~~~~~i~~~Gf~~l~W~~~ 447 (467)
|+. +..+......++.++.++|||||.+++.... +.... . +++. .++..||+.+.....
T Consensus 147 v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~ 213 (230)
T 1fbn_A 147 IYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDI 213 (230)
T ss_dssp EEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEEC
T ss_pred EEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEcc
Confidence 993 2233322357899999999999999996211 11111 1 2444 778889988776543
No 105
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.31 E-value=1.4e-11 Score=124.24 Aligned_cols=134 Identities=18% Similarity=0.124 Sum_probs=97.9
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCcc
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sF 380 (467)
.+.+.+.++. +|||||||+|.++..+++.+..+.++++|+ +.+++.++++ + .+.++.+|... +++. .|
T Consensus 176 ~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~ 250 (360)
T 1tw3_A 176 AAAYDWTNVR--HVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KA 250 (360)
T ss_dssp HHHSCCTTCS--EEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CE
T ss_pred HHhCCCccCc--EEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-Cc
Confidence 3444555554 899999999999999998743333344666 6777766542 2 47888998765 3433 49
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc-cCCC----------------------CHHHHHHHHHHc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF-CNKK----------------------DLDDYMYMFLQF 437 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~-~~~~----------------------~~~~~~~~i~~~ 437 (467)
|+|++..+++||.+.. ...++.++.++|||||.+++.++. .+.. ..+++.+++++.
T Consensus 251 D~v~~~~vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHD-AVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASA 329 (360)
T ss_dssp EEEEEESCGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred cEEEEcccccCCCHHH-HHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHC
Confidence 9999999997776553 458999999999999999998776 2211 234788899999
Q ss_pred CceeeEEEEc
Q 012235 438 RYKKHKWAIS 447 (467)
Q Consensus 438 Gf~~l~W~~~ 447 (467)
||+.++....
T Consensus 330 Gf~~~~~~~~ 339 (360)
T 1tw3_A 330 GLVVEEVRQL 339 (360)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEEEEEeC
Confidence 9998876543
No 106
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.31 E-value=9.4e-12 Score=127.02 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=96.8
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.+|||||||+|.++..++++ +.++++ +|+ +.+++.+.+...+.++.+|+.. |++.+ |+|++..++++|.+..
T Consensus 203 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~ 276 (364)
T 3p9c_A 203 GTLVDVGGGVGATVAAIAAHYPTIKGVN--FDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQH 276 (364)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCeEEE--ecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHH
Confidence 48999999999999999986 456666 566 6777766666668999999887 77654 9999999997776553
Q ss_pred hHHHHHHHHHhccCCCcEEEEEecccCCC---------------------------CHHHHHHHHHHcCceeeEEEEc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFCNKK---------------------------DLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~~~~---------------------------~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
...+|+++.++|||||++++.++..+.. ..++|.+++++.||+.++....
T Consensus 277 -~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 277 -CATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYI 353 (364)
T ss_dssp -HHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEc
Confidence 5689999999999999999987654321 1346888999999998876543
No 107
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.31 E-value=1.8e-11 Score=118.51 Aligned_cols=161 Identities=13% Similarity=0.087 Sum_probs=106.7
Q ss_pred ccccccccCCcChHHHHHH---HhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc----
Q 012235 291 EKPKWVANRSVPVDFLISD---ILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR---- 360 (467)
Q Consensus 291 e~~~W~~~~~~~~d~~I~~---lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r---- 360 (467)
+-+.|.- ........|.. .+.+++|+ +|||+|||+|+++..+++. | -.|++ +|+++.|++.+.++
T Consensus 51 e~r~w~p-~rsklaa~i~~gl~~l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~a--vD~s~~~~~~l~~~a~~~ 125 (233)
T 4df3_A 51 EYREWNA-YRSKLAAALLKGLIELPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYG--VEFAPRVMRDLLTVVRDR 125 (233)
T ss_dssp EEEECCT-TTCHHHHHHHTTCSCCCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEE--EECCHHHHHHHHHHSTTC
T ss_pred eeeeECC-CchHHHHHHHhchhhcCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEE--EeCCHHHHHHHHHhhHhh
Confidence 5566765 33322233322 24578888 9999999999999999987 4 45777 88889998877643
Q ss_pred CCccEEEccCCC---CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-------CCCHHHH
Q 012235 361 GLIPLYVTLNQR---LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------KKDLDDY 430 (467)
Q Consensus 361 g~i~~~~~d~~~---Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------~~~~~~~ 430 (467)
+++..+.++... .++..+++|+|++.... ++ . .+.++.++.|+|||||.++++..... ....+..
T Consensus 126 ~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~-~~--~--~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~e 200 (233)
T 4df3_A 126 RNIFPILGDARFPEKYRHLVEGVDGLYADVAQ-PE--Q--AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKRE 200 (233)
T ss_dssp TTEEEEESCTTCGGGGTTTCCCEEEEEECCCC-TT--H--HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHH
T ss_pred cCeeEEEEeccCccccccccceEEEEEEeccC-Ch--h--HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHH
Confidence 456677776543 45667899999876543 22 2 35799999999999999998643221 1122345
Q ss_pred HHHHHHcCceeeEEEEcc-CCCCceEEEEEee
Q 012235 431 MYMFLQFRYKKHKWAISP-KSKDEVYLSALLE 461 (467)
Q Consensus 431 ~~~i~~~Gf~~l~W~~~~-k~~devyl~avlq 461 (467)
.+.++..||+.+.-.... ...+...+.++++
T Consensus 201 v~~L~~~GF~l~e~i~L~pf~~~H~lv~~~~r 232 (233)
T 4df3_A 201 IKTLMDGGLEIKDVVHLDPFDRDHAMIYAVMR 232 (233)
T ss_dssp HHHHHHTTCCEEEEEECTTTSTTEEEEEECC-
T ss_pred HHHHHHCCCEEEEEEccCCCCCceEEEEEEEe
Confidence 566778899877654332 2445555555554
No 108
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.30 E-value=4.8e-12 Score=128.98 Aligned_cols=123 Identities=16% Similarity=0.089 Sum_probs=95.1
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhH
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLL 398 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l 398 (467)
.+|||||||+|.++..++++...+.++.+|+ +.+++.+.+...+.++.+|+.. ++++ ||+|++..+++||.+.. .
T Consensus 211 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~-~ 285 (372)
T 1fp1_D 211 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEK-C 285 (372)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHH-H
T ss_pred CEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCHHH-H
Confidence 4899999999999999998854444444677 7777776654558899999877 6654 99999999997776652 4
Q ss_pred HHHHHHHHhccCCCcEEEEEecccCCC--------------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 399 DFILFDWDRILRPGGLLWIDRFFCNKK--------------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 399 ~~~L~el~RvLKPGG~LiI~~~~~~~~--------------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
..+++++.++|||||.+++.++..+.. ..+++.+++++.||+.++...
T Consensus 286 ~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 286 IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 589999999999999999986543221 234777888999998887654
No 109
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.30 E-value=2.6e-11 Score=111.54 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=91.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------------
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------------- 374 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------------- 374 (467)
+.++. +|||+|||+|.++..++++ +..|+++|++... ....+.++++|+...+
T Consensus 20 ~~~~~--~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 20 LKKNK--IILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CCTTE--EEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------CCCCceEEEccccchhhhhhcccccccccc
Confidence 45554 8999999999999999987 3678886655321 1123778899988776
Q ss_pred -----------cCCCccceEEecccccccc-----chh----hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHH
Q 012235 375 -----------FFDNTMDLIHTTGFMDGWL-----DML----LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMF 434 (467)
Q Consensus 375 -----------f~d~sFDlVis~~~L~h~~-----~~~----~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i 434 (467)
+++++||+|+++.++ |+. +.. ....++.++.++|||||.|++..+.. ++...+...+
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~l~~~l 167 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG--SQTNNLKTYL 167 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS--TTHHHHHHHH
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC--CCHHHHHHHH
Confidence 567899999998877 442 111 01247899999999999999866542 3344666666
Q ss_pred HHcCceeeEEEEccC---CCCceEEEEE
Q 012235 435 LQFRYKKHKWAISPK---SKDEVYLSAL 459 (467)
Q Consensus 435 ~~~Gf~~l~W~~~~k---~~devyl~av 459 (467)
+.. |..+.+..... ...|.|+.+.
T Consensus 168 ~~~-f~~v~~~~~~~~r~~s~e~y~v~~ 194 (201)
T 2plw_A 168 KGM-FQLVHTTKPKASRNESREIYLVCK 194 (201)
T ss_dssp HTT-EEEEEECCCC-----CCEEEEEEE
T ss_pred HHH-HheEEEECCcccCCcCceEEEEEe
Confidence 654 76665532221 4557787654
No 110
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.30 E-value=2.5e-11 Score=121.24 Aligned_cols=122 Identities=9% Similarity=-0.010 Sum_probs=95.3
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.+|||+|||+|.++..++++ +..+++ +|+ +.+++.++++ ..+.++.+|... +++ ++||+|++..++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVM--LDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEE--EEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEE--eCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhc
Confidence 48999999999999999987 567777 555 5666665543 358899999876 554 689999999999
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
+||.+.. ...++.++.++|||||++++.++..+.. ..+++.+++++.||+.++...
T Consensus 244 ~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 244 GDLDEAA-SLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp GGCCHHH-HHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 7786553 4689999999999999999987654321 244788899999998877543
No 111
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.30 E-value=1.8e-11 Score=123.66 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=94.8
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHH-----HcCCccEEEccCCCCccCCCccceE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIA-----LRGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~-----~rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
+.+.+.++. +|||||||+|.++..++++...+.++.+|++ .++.... ..+.+.++.+|+. .+++ +||+|
T Consensus 178 ~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v 251 (348)
T 3lst_A 178 RAGDFPATG--TVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVH 251 (348)
T ss_dssp HHSCCCSSE--EEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEE
T ss_pred HhCCccCCc--eEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEE
Confidence 334444444 8999999999999999987444444446663 3333111 0123788899985 3444 89999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC----------------------CHHHHHHHHHHcCcee
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK----------------------DLDDYMYMFLQFRYKK 441 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~----------------------~~~~~~~~i~~~Gf~~ 441 (467)
++..+++||.+.+ ...+++++.++|||||++++.++..... ..+++.+++++.||+.
T Consensus 252 ~~~~vlh~~~d~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 330 (348)
T 3lst_A 252 VLKRILHNWGDED-SVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRL 330 (348)
T ss_dssp EEESCGGGSCHHH-HHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEE
T ss_pred EEehhccCCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCce
Confidence 9999997777653 4689999999999999999987654332 2457889999999998
Q ss_pred eEEEE
Q 012235 442 HKWAI 446 (467)
Q Consensus 442 l~W~~ 446 (467)
++...
T Consensus 331 ~~~~~ 335 (348)
T 3lst_A 331 DRVVG 335 (348)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87655
No 112
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.30 E-value=1.2e-11 Score=111.96 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=87.5
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--CccEEEccCCCCcc---CCCccceEEec
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--LIPLYVTLNQRLPF---FDNTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--~i~~~~~d~~~Lpf---~d~sFDlVis~ 386 (467)
++.++. +|||+|||. +.+|+++.|++.++++. .+.+.++|+..+++ ++++||+|+++
T Consensus 9 g~~~g~--~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 9 GISAGQ--FVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp TCCTTS--EEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCCC--EEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence 456666 999999996 12889999999998764 48899999999987 78999999999
Q ss_pred cccccc-cchhhHHHHHHHHHhccCCCcEEEEEecccCCC-------CHHHHHHHHHHcCc
Q 012235 387 GFMDGW-LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-------DLDDYMYMFLQFRY 439 (467)
Q Consensus 387 ~~L~h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-------~~~~~~~~i~~~Gf 439 (467)
.+++|+ .+. ..++.++.|+|||||+|++.++..... ..+++.+.+++.||
T Consensus 71 ~~l~~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 71 LVPGSTTLHS---AEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CSTTCCCCCC---HHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred ChhhhcccCH---HHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 999665 343 689999999999999999976543211 25689999999999
No 113
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.30 E-value=1e-11 Score=117.01 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=87.6
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d~sFDlVis~~~L 389 (467)
+|||||||+|.++..+++. +..++| +|+++.+++.+.++ + .+.++++|+..++ +++++||.|++++..
T Consensus 41 ~vLDiGcG~G~~~~~la~~~p~~~v~g--iD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~ 118 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQNPDINYIG--IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 118 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred eEEEEecCCCHHHHHHHHHCCCCCEEE--EEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC
Confidence 8999999999999999987 678888 88889988877653 3 3788899988876 678899999987654
Q ss_pred ccccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 390 DGWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 390 ~h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.|... .....++.++.++|||||.|++.+... +..+...+.+...||...
T Consensus 119 -p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 119 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--GLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--HHHHHHHHHHHHHTCEEE
T ss_pred -CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCccc
Confidence 33321 012578999999999999999965211 112244566777777543
No 114
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.29 E-value=2.3e-12 Score=124.04 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=88.9
Q ss_pred ccccccCCcChHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcCC-ccEEE-cc
Q 012235 293 PKWVANRSVPVDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRGL-IPLYV-TL 369 (467)
Q Consensus 293 ~~W~~~~~~~~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg~-i~~~~-~d 369 (467)
..|..+.+......+.. +.+... ..+|||||||+|.++..++++|. .|+| +|+++.|++.+.++.. +.... .+
T Consensus 15 ~~yvsrg~~kL~~~L~~-~~~~~~-g~~VLDiGcGtG~~t~~la~~g~~~V~g--vDis~~ml~~a~~~~~~~~~~~~~~ 90 (232)
T 3opn_A 15 LRYVSRGGLKLEKALKE-FHLEIN-GKTCLDIGSSTGGFTDVMLQNGAKLVYA--LDVGTNQLAWKIRSDERVVVMEQFN 90 (232)
T ss_dssp CCSSSTTHHHHHHHHHH-TTCCCT-TCEEEEETCTTSHHHHHHHHTTCSEEEE--ECSSCCCCCHHHHTCTTEEEECSCC
T ss_pred CCccCCcHHHHHHHHHH-cCCCCC-CCEEEEEccCCCHHHHHHHhcCCCEEEE--EcCCHHHHHHHHHhCccccccccce
Confidence 45777544434333433 333322 23899999999999999999985 8888 7777888887665432 11111 11
Q ss_pred C-----CCCccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe---cccCC----------------C
Q 012235 370 N-----QRLPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR---FFCNK----------------K 425 (467)
Q Consensus 370 ~-----~~Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~---~~~~~----------------~ 425 (467)
. ..++ ...||.+.+..++.++ ..++.++.|+|||||.+++.. +.... .
T Consensus 91 ~~~~~~~~~~--~~~~d~~~~D~v~~~l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~ 162 (232)
T 3opn_A 91 FRNAVLADFE--QGRPSFTSIDVSFISL------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQM 162 (232)
T ss_dssp GGGCCGGGCC--SCCCSEEEECCSSSCG------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHH
T ss_pred EEEeCHhHcC--cCCCCEEEEEEEhhhH------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHH
Confidence 1 1111 1123444443333222 368999999999999999862 11000 1
Q ss_pred CHHHHHHHHHHcCceeeEEEEccC
Q 012235 426 DLDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 426 ~~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
..+++.+++++.||....+...+.
T Consensus 163 ~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 163 TIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp HHHHHHHHHHHHTEEEEEEEECSS
T ss_pred HHHHHHHHHHHCCCEEEEEEEccC
Confidence 233788889999999988877654
No 115
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.29 E-value=7.1e-12 Score=124.21 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=81.3
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcC-------------CccEEEccCCCCc----cC--CCc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRG-------------LIPLYVTLNQRLP----FF--DNT 379 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg-------------~i~~~~~d~~~Lp----f~--d~s 379 (467)
+|||+|||+|.++..+++. +..+++ +|+++.+++.+.++. .+.++++|+..++ ++ +++
T Consensus 37 ~VLDlGcG~G~~~~~l~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 37 TVLDLGCGKGGDLLKWKKGRINKLVC--TDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp EEEEETCTTTTTHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred EEEEECCCCcHHHHHHHhcCCCEEEE--EeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 8999999999999999876 568888 778888888876531 3678999998876 53 459
Q ss_pred cceEEecccccccc--chhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 380 MDLIHTTGFMDGWL--DMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 380 FDlVis~~~L~h~~--~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
||+|+++.++ ||. +......++.++.++|||||.|++.++.
T Consensus 115 fD~V~~~~~l-~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 115 FDICSCQFVC-HYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp EEEEEEETCG-GGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEEEEEecch-hhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 9999999999 664 4444679999999999999999998763
No 116
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.29 E-value=1.5e-11 Score=122.68 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=96.9
Q ss_pred ccccccCCcChHHHHHHHhcCC-CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-CccEE-Ec
Q 012235 293 PKWVANRSVPVDFLISDILAIK-PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-LIPLY-VT 368 (467)
Q Consensus 293 ~~W~~~~~~~~d~~I~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-~i~~~-~~ 368 (467)
..|+.+.+......+ +.+.+. ++. +|||+|||||.++..++++|. .|++ +|+++.|++.+.+.. .+... ..
T Consensus 63 ~~yvsrg~~Kl~~~l-~~~~~~~~g~--~vLDiGcGTG~~t~~L~~~ga~~V~a--VDvs~~mL~~a~r~~~rv~~~~~~ 137 (291)
T 3hp7_A 63 LRYVSRGGLKLEKAL-AVFNLSVEDM--ITIDIGASTGGFTDVMLQNGAKLVYA--VDVGTNQLVWKLRQDDRVRSMEQY 137 (291)
T ss_dssp CCSSSTTHHHHHHHH-HHTTCCCTTC--EEEEETCTTSHHHHHHHHTTCSEEEE--ECSSSSCSCHHHHTCTTEEEECSC
T ss_pred cccccchHHHHHHHH-HhcCCCcccc--EEEecCCCccHHHHHHHhCCCCEEEE--EECCHHHHHHHHHhCcccceeccc
Confidence 457774443333333 233333 333 899999999999999999875 8999 777788887754432 22222 22
Q ss_pred cCCCCc---cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE---ecccCCC----------------C
Q 012235 369 LNQRLP---FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID---RFFCNKK----------------D 426 (467)
Q Consensus 369 d~~~Lp---f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~---~~~~~~~----------------~ 426 (467)
++..++ ++..+||+|++..+++++ ..++.++.|+|||||.+++. .|-..++ .
T Consensus 138 ni~~l~~~~l~~~~fD~v~~d~sf~sl------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~ 211 (291)
T 3hp7_A 138 NFRYAEPVDFTEGLPSFASIDVSFISL------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKV 211 (291)
T ss_dssp CGGGCCGGGCTTCCCSEEEECCSSSCG------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHH
T ss_pred CceecchhhCCCCCCCEEEEEeeHhhH------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHH
Confidence 333333 234569999998887422 46899999999999999886 2211111 1
Q ss_pred HHHHHHHHHHcCceeeEEEEccC
Q 012235 427 LDDYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l~W~~~~k 449 (467)
.+.+.+++...||....+...+.
T Consensus 212 ~~~v~~~~~~~Gf~v~~~~~spi 234 (291)
T 3hp7_A 212 LETVTAFAVDYGFSVKGLDFSPI 234 (291)
T ss_dssp HHHHHHHHHHTTEEEEEEEECSS
T ss_pred HHHHHHHHHHCCCEEEEEEECCC
Confidence 23677888899999988887665
No 117
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.28 E-value=2.4e-11 Score=109.62 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=92.3
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCC-
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFD- 377 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d- 377 (467)
.+.+.+.+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ ..+.+..+|... ++++
T Consensus 24 ~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 98 (192)
T 1l3i_A 24 LIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYA--IDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKI 98 (192)
T ss_dssp HHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEE--EESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTS
T ss_pred HHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCEEEE--EECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccC
Confidence 344555666665 8999999999999999998888888 66778888777653 246778887665 3333
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
++||+|++..++.+ +..++.++.++|+|||.+++..+.. +....+.+.+++.||
T Consensus 99 ~~~D~v~~~~~~~~------~~~~l~~~~~~l~~gG~l~~~~~~~--~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 99 PDIDIAVVGGSGGE------LQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECLRDLGF 152 (192)
T ss_dssp CCEEEEEESCCTTC------HHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCchHH------HHHHHHHHHHhcCCCcEEEEEecCc--chHHHHHHHHHHCCC
Confidence 68999999987732 3579999999999999999976542 234477888899998
No 118
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.27 E-value=1.7e-11 Score=118.91 Aligned_cols=118 Identities=11% Similarity=-0.033 Sum_probs=90.7
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC---CCccceEEecc
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF---DNTMDLIHTTG 387 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~---d~sFDlVis~~ 387 (467)
.+|||||||+|..+..++.. +.+|++ +|+++.+++.++++ + .+.+++++++.++.. +++||+|++..
T Consensus 82 ~~vLDiG~G~G~~~i~la~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 82 LRVLDLGTGAGFPGLPLKIVRPELELVL--VDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp CEEEEETCTTTTTHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 38999999999999999876 678888 77888888777643 3 378899998887653 48999999976
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+. + +..++.++.++|||||+|++..-....++...+.+.++.+|+......
T Consensus 160 ~~----~---~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 160 VA----P---LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp SC----C---HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEE
T ss_pred cC----C---HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 43 1 357899999999999999886644334444467788888999765543
No 119
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.27 E-value=4.5e-11 Score=107.19 Aligned_cols=120 Identities=9% Similarity=0.086 Sum_probs=92.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~s 379 (467)
.+.+.+...++. +|||+|||+|.++..+++.+..+++ +|+++.+++.+.++ + .+.++++|... ++++++
T Consensus 26 ~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 100 (183)
T 2yxd_A 26 VSIGKLNLNKDD--VVVDVGCGSGGMTVEIAKRCKFVYA--IDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLE 100 (183)
T ss_dssp HHHHHHCCCTTC--EEEEESCCCSHHHHHHHTTSSEEEE--EECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCC
T ss_pred HHHHHcCCCCCC--EEEEeCCCCCHHHHHHHhcCCeEEE--EeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCC
Confidence 344555665665 8999999999999999998888998 66778888877654 2 47788888776 666789
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
||+|+++.+ . ....++.++.++ |||.+++.++.. +....+.+.+++.||..
T Consensus 101 ~D~i~~~~~-----~--~~~~~l~~~~~~--~gG~l~~~~~~~--~~~~~~~~~l~~~g~~~ 151 (183)
T 2yxd_A 101 FNKAFIGGT-----K--NIEKIIEILDKK--KINHIVANTIVL--ENAAKIINEFESRGYNV 151 (183)
T ss_dssp CSEEEECSC-----S--CHHHHHHHHHHT--TCCEEEEEESCH--HHHHHHHHHHHHTTCEE
T ss_pred CcEEEECCc-----c--cHHHHHHHHhhC--CCCEEEEEeccc--ccHHHHHHHHHHcCCeE
Confidence 999999987 1 136789999999 999999977432 23447888889998743
No 120
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.27 E-value=1.3e-11 Score=116.52 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=84.3
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHH----HHHHHcCCccEEEccCCCC----ccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFN----EMIALRGLIPLYVTLNQRL----PFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l----~~a~~rg~i~~~~~d~~~L----pf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..+++.. ..|+| +|+++.|+ +.+..+..+.++++|+... ++ .++||+
T Consensus 55 ~~~g~--~VLDlGcGtG~~~~~la~~~~~~~V~g--vD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~-~~~fD~ 129 (210)
T 1nt2_A 55 LRGDE--RVLYLGAASGTTVSHLADIVDEGIIYA--VEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI-VEKVDL 129 (210)
T ss_dssp CCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEE--ECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT-CCCEEE
T ss_pred CCCCC--EEEEECCcCCHHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhccc-ccceeE
Confidence 45555 89999999999999998863 57888 77887654 4444455577778887663 44 389999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc---CCCCHHHH----HHHHHHcCceeeEEEEc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC---NKKDLDDY----MYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~---~~~~~~~~----~~~i~~~Gf~~l~W~~~ 447 (467)
|+++... + .....++.++.|+|||||.|++..... .....+++ .+.+++. |+.+.-...
T Consensus 130 V~~~~~~-~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 130 IYQDIAQ-K----NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp EEECCCS-T----THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred EEEeccC-h----hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence 9998422 2 223456999999999999999974221 22233332 2235666 877765544
No 121
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.27 E-value=2.5e-11 Score=113.49 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=91.4
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHH--------HcC--CccEEEccCCCCccCC
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIA--------LRG--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~--------~rg--~i~~~~~d~~~Lpf~d 377 (467)
.+...++. +|||+|||+|.++..+++. +..|++ +|+++.|++.++ ..+ .+.++++|+..+|+.+
T Consensus 22 ~l~~~~~~--~vLDiGcG~G~~~~~la~~~p~~~v~g--vD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 97 (218)
T 3mq2_A 22 QLRSQYDD--VVLDVGTGDGKHPYKVARQNPSRLVVA--LDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS 97 (218)
T ss_dssp HHHTTSSE--EEEEESCTTCHHHHHHHHHCTTEEEEE--EESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC
T ss_pred HhhccCCC--EEEEecCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC
Confidence 34455555 8999999999999999998 677888 777788777532 122 3789999999999887
Q ss_pred CccceEEeccccc-----cccchhhHHHHHHHHHhccCCCcEEEEEecccC------------CCC----HHHHHHHHHH
Q 012235 378 NTMDLIHTTGFMD-----GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN------------KKD----LDDYMYMFLQ 436 (467)
Q Consensus 378 ~sFDlVis~~~L~-----h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~------------~~~----~~~~~~~i~~ 436 (467)
++ |.|+...... |..+. ..++.++.|+|||||.+++...... ... .+.+.+.+..
T Consensus 98 ~~-d~v~~~~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (218)
T 3mq2_A 98 GV-GELHVLMPWGSLLRGVLGSS---PEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAE 173 (218)
T ss_dssp CE-EEEEEESCCHHHHHHHHTSS---SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHH
T ss_pred CC-CEEEEEccchhhhhhhhccH---HHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHH
Confidence 77 8777443221 22232 5799999999999999999532110 001 1247778899
Q ss_pred cCceeeEEEEc
Q 012235 437 FRYKKHKWAIS 447 (467)
Q Consensus 437 ~Gf~~l~W~~~ 447 (467)
.||....-...
T Consensus 174 aGf~i~~~~~~ 184 (218)
T 3mq2_A 174 AGWKLADCRYL 184 (218)
T ss_dssp TTEEEEEEEEE
T ss_pred cCCCceeeecc
Confidence 99977665443
No 122
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.26 E-value=1.1e-10 Score=112.74 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=91.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHH----HHHHHcCCccEEEccCCCCcc---CCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFN----EMIALRGLIPLYVTLNQRLPF---FDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l----~~a~~rg~i~~~~~d~~~Lpf---~d~sFDl 382 (467)
++++. +|||+|||+|.++..+++. ...|++ +|+++.|+ +.+.++.++.++++|+..... ..++||+
T Consensus 74 l~~g~--~VLDlG~GtG~~t~~la~~v~~~G~V~a--vD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 74 IRKGT--KVLYLGAASGTTISHVSDIIELNGKAYG--VEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHTTTSEEEE--EECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred CCCCC--EEEEEeecCCHHHHHHHHHhCCCCEEEE--EECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEE
Confidence 56676 9999999999999999876 347888 66777664 445556668888999876432 2468999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc-------CCCCHHHHHHHHHHcCceeeEEEEccC-CCCce
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC-------NKKDLDDYMYMFLQFRYKKHKWAISPK-SKDEV 454 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~-------~~~~~~~~~~~i~~~Gf~~l~W~~~~k-~~dev 454 (467)
|++..+. .+. .+.+...+.++|||||.|+++.... +.+..+...+.++..||+.+.-..... .++..
T Consensus 150 I~~d~a~---~~~--~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~ 224 (232)
T 3id6_C 150 LYVDIAQ---PDQ--TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHA 224 (232)
T ss_dssp EEECCCC---TTH--HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCE
T ss_pred EEecCCC---hhH--HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceE
Confidence 9998765 222 2344556677999999999874221 122233566677788998886554432 44544
Q ss_pred EEE
Q 012235 455 YLS 457 (467)
Q Consensus 455 yl~ 457 (467)
.+.
T Consensus 225 ~v~ 227 (232)
T 3id6_C 225 IVL 227 (232)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 123
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.26 E-value=1.9e-11 Score=112.10 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=78.8
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..+++++. .|++ +|+++.+++.++++ + .+.++++|+..++ +++++||+|+++..+
T Consensus 47 ~vLDlgcG~G~~~~~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~- 123 (189)
T 3p9n_A 47 AVLDLYAGSGALGLEALSRGAASVLF--VESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY- 123 (189)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEE--EECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT-
T ss_pred EEEEeCCCcCHHHHHHHHCCCCeEEE--EECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC-
Confidence 899999999999998888765 6888 77778888877653 3 4789999987764 447899999999887
Q ss_pred cccchhhHHHHHHHHHh--ccCCCcEEEEEeccc
Q 012235 391 GWLDMLLLDFILFDWDR--ILRPGGLLWIDRFFC 422 (467)
Q Consensus 391 h~~~~~~l~~~L~el~R--vLKPGG~LiI~~~~~ 422 (467)
++.. .....++.++.+ +|+|||.+++.+...
T Consensus 124 ~~~~-~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 124 NVDS-ADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TSCH-HHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred Ccch-hhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 4421 225789999999 999999999976543
No 124
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.25 E-value=7.9e-12 Score=130.07 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=85.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHH-----------c----CCccEEEcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-NVT-IVSTALNLGAPFNEMIAL-----------R----GLIPLYVTL 369 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~-----------r----g~i~~~~~d 369 (467)
+.+.+.+.+++ +|||||||+|.++..++.. +.. |+| +|+++.+++.+.+ . +.+.++++|
T Consensus 165 il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvG--IDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 165 MIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYG--VEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHCCCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEE--EECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 33445677777 9999999999999998864 554 888 6777766665543 1 348899999
Q ss_pred CCCCccCC--CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCC
Q 012235 370 NQRLPFFD--NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK 425 (467)
Q Consensus 370 ~~~Lpf~d--~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~ 425 (467)
+..+|+.+ ..||+|+++..+ ++.+ +...|.++.|+|||||.|++.+.+.+.+
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~-F~pd---l~~aL~Ei~RvLKPGGrIVssE~f~p~d 294 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFA-FGPE---VDHQLKERFANMKEGGRIVSSKPFAPLN 294 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTT-CCHH---HHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred ccCCccccccCCccEEEEcccc-cCch---HHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence 99998754 579999998776 4433 4688999999999999999988777543
No 125
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.25 E-value=2.6e-11 Score=134.73 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=88.1
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----------C--CccEEEccCCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----------G--LIPLYVTLNQR 372 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----------g--~i~~~~~d~~~ 372 (467)
.+.+...++. +|||||||+|.++..|++.+ ..|+| +|+++.|++.++++ + .+.++++|+..
T Consensus 714 LelL~~~~g~--rVLDVGCGTG~lai~LAr~g~p~a~VtG--VDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 714 LKHIRESSAS--TLVDFGCGSGSLLDSLLDYPTSLQTIIG--VDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp HHHHHHSCCS--EEEEETCSSSHHHHHHTSSCCCCCEEEE--EESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred HHHhcccCCC--EEEEECCCCCHHHHHHHHhCCCCCeEEE--EECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 3444444555 89999999999999999987 68888 77888999888661 2 37899999999
Q ss_pred CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 373 LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 373 Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+++.+++||+|++..+++|+.++. ...++.++.|+|||| .+++.++
T Consensus 790 Lp~~d~sFDlVV~~eVLeHL~dp~-l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 790 FDSRLHDVDIGTCLEVIEHMEEDQ-ACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp CCTTSCSCCEEEEESCGGGSCHHH-HHHHHHHHHHTTCCS-EEEEEEC
T ss_pred CCcccCCeeEEEEeCchhhCChHH-HHHHHHHHHHHcCCC-EEEEEec
Confidence 999999999999999997776653 457899999999999 7777764
No 126
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.25 E-value=4.4e-12 Score=121.56 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=85.1
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC----C-ccEEEccCCCC--ccCCCccceEEe
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG----L-IPLYVTLNQRL--PFFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg----~-i~~~~~d~~~L--pf~d~sFDlVis 385 (467)
.+|. +|||||||+|..+..+++.+ ..+++ +|+++.+++.++++. . +.++.++++.+ ++++++||.|+.
T Consensus 59 ~~G~--rVLdiG~G~G~~~~~~~~~~~~~v~~--id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 59 SKGG--RVLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTCE--EEEEECCTTSHHHHHHTTSCEEEEEE--EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred cCCC--eEEEECCCccHHHHHHHHhCCcEEEE--EeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 3444 89999999999999999874 56777 778899999887642 2 56777776544 477899999985
Q ss_pred c-----cccccccchhhHHHHHHHHHhccCCCcEEEEEecccC-------CCC-----HHHHHHHHHHcCcee
Q 012235 386 T-----GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN-------KKD-----LDDYMYMFLQFRYKK 441 (467)
Q Consensus 386 ~-----~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~-------~~~-----~~~~~~~i~~~Gf~~ 441 (467)
. ..+.|+.+ .+.++.++.|+|||||.|++.+.... .+. .+.+...+.+.||+.
T Consensus 135 D~~~~~~~~~~~~~---~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~ 204 (236)
T 3orh_A 135 DTYPLSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp CCCCCBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCG
T ss_pred eeeecccchhhhcc---hhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeE
Confidence 3 33334433 36899999999999999988542211 011 114445667788864
No 127
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.25 E-value=2.3e-11 Score=116.11 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=94.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----C--CccEEEccCCCCccC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----g--~i~~~~~d~~~Lpf~ 376 (467)
+...+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+.+..+|+...+++
T Consensus 88 ~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~--~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 88 MVTLLDLAPGM--RVLEAGTGSGGLTLFLARAVGEKGLVES--YEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHcCCCCCC--EEEEECCCcCHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 44556666776 8999999999999999987 578888 67778888777654 3 478889998888787
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceee
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
+++||+|++.. .+. ..++.++.++|+|||.+++..+.. +....+.+.+++.||..+
T Consensus 164 ~~~~D~v~~~~-----~~~---~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 164 EAAYDGVALDL-----MEP---WKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLE 219 (258)
T ss_dssp TTCEEEEEEES-----SCG---GGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEE
T ss_pred CCCcCEEEECC-----cCH---HHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceE
Confidence 88999999842 223 368999999999999999977543 233466677777888653
No 128
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.25 E-value=2.1e-11 Score=123.43 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=79.1
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+...++. +|||||||+|.++..+++.|. .|+++|+ ++ +++.++++ ..+.++.+|+..+++++++|
T Consensus 58 ~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~gvD~--s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 58 QNPHIFKDK--VVLDVGCGTGILSMFAAKAGAKKVLGVDQ--SE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HCGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEES--ST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred hhhhhcCCC--EEEEeeccCcHHHHHHHHcCCCEEEEECh--HH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 334445555 899999999999999999875 8999555 44 66666542 34789999999999888999
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
|+|++......+.....+..++.++.|+|||||.++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999998743233333335789999999999999987
No 129
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.24 E-value=4e-11 Score=116.21 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=93.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEecc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+.++. +|||+|||+|.++..+++.|..|++ +|+++.+++.++++ +. +.+..++.... +++++||+|+++.
T Consensus 118 ~~~~~--~VLDiGcG~G~l~~~la~~g~~v~g--vDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~ 192 (254)
T 2nxc_A 118 LRPGD--KVLDLGTGSGVLAIAAEKLGGKALG--VDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANL 192 (254)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHTTCEEEE--EESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEEC
T ss_pred cCCCC--EEEEecCCCcHHHHHHHHhCCeEEE--EECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECC
Confidence 34555 8999999999999999999888888 56667777766543 33 67778776552 4567899999987
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
.. +. +..++.++.++|||||+++++.+... ..+.+.+.+++.||+.+....
T Consensus 193 ~~-~~-----~~~~l~~~~~~LkpgG~lils~~~~~--~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 193 YA-EL-----HAALAPRYREALVPGGRALLTGILKD--RAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp CH-HH-----HHHHHHHHHHHEEEEEEEEEEEEEGG--GHHHHHHHHHHTTCEEEEEEE
T ss_pred cH-HH-----HHHHHHHHHHHcCCCCEEEEEeeccC--CHHHHHHHHHHCCCEEEEEec
Confidence 65 21 35789999999999999999776543 355788899999998887643
No 130
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.24 E-value=2.4e-11 Score=112.73 Aligned_cols=102 Identities=16% Similarity=0.059 Sum_probs=82.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++.+|....+..+++|
T Consensus 69 ~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLELTPQS--RVLEIGTGSGYQTAILAHLVQHVCS--VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcCCCCCC--EEEEEcCCCCHHHHHHHHhCCEEEE--EecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 44555666666 8999999999999999999889999 67778888877653 3 3788899988877667899
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|+|++..++.|+.+ ++.++|||||++++....
T Consensus 145 D~i~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 99999999855443 578999999999996643
No 131
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.23 E-value=1.7e-11 Score=124.54 Aligned_cols=99 Identities=15% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEEe
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.++. +|||+|||+|.++..+++.|. .|+|+| ++ ++++.+++ .+ .+.++++++..+++++++||+|++
T Consensus 65 ~~~~--~VLDvGcG~G~~~~~la~~g~~~v~gvD--~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis 139 (349)
T 3q7e_A 65 FKDK--VVLDVGSGTGILCMFAAKAGARKVIGIE--CS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS 139 (349)
T ss_dssp HTTC--EEEEESCTTSHHHHHHHHTTCSEEEEEE--CS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CCCC--EEEEEeccchHHHHHHHHCCCCEEEEEC--cH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEE
Confidence 3454 899999999999999999965 899955 45 36666643 23 278999999999998899999999
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.....+......++.++.++.|+|||||.++.
T Consensus 140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 77654443334467899999999999999875
No 132
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.23 E-value=1e-12 Score=124.82 Aligned_cols=126 Identities=12% Similarity=0.045 Sum_probs=91.4
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEE
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
...++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++++|+..++ ++++||+|+
T Consensus 75 ~~~~~~--~vLD~gcG~G~~~~~la~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~ 149 (241)
T 3gdh_A 75 QSFKCD--VVVDAFCGVGGNTIQFALTGMRVIA--IDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVF 149 (241)
T ss_dssp HHSCCS--EEEETTCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEE
T ss_pred hccCCC--EEEECccccCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEE
Confidence 333555 8999999999999999999989998 77788888877643 3 4789999988877 578999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEe----------cccCCCCHHHHHHHHHHcCceeeEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR----------FFCNKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~----------~~~~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
++.++++.... ...+.++.++|+|||.+++.. +.....+.+.+..++..-|...+...
T Consensus 150 ~~~~~~~~~~~---~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~ 217 (241)
T 3gdh_A 150 LSPPWGGPDYA---TAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQN 217 (241)
T ss_dssp ECCCCSSGGGG---GSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEE
T ss_pred ECCCcCCcchh---hhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEeh
Confidence 99988554443 347788999999999977643 11122244455555555555444443
No 133
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.23 E-value=8.2e-11 Score=117.90 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=96.8
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf 375 (467)
..+..++...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ + .+.++++|+..++.
T Consensus 108 ~l~~~~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~a--vD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~ 183 (315)
T 1ixk_A 108 MYPPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYA--FDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE 183 (315)
T ss_dssp HHHHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG
T ss_pred HHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEE--EcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc
Confidence 3455667777776 8999999999999999975 367888 77888888777653 3 36788889888776
Q ss_pred CCCccceEEeccc------ccccc-------ch------hhHHHHHHHHHhccCCCcEEEEEecccCCC-CHHHHHHHHH
Q 012235 376 FDNTMDLIHTTGF------MDGWL-------DM------LLLDFILFDWDRILRPGGLLWIDRFFCNKK-DLDDYMYMFL 435 (467)
Q Consensus 376 ~d~sFDlVis~~~------L~h~~-------~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-~~~~~~~~i~ 435 (467)
.+++||+|++... +.+.. .. .....++.++.++|||||.+++++.....+ +.+.+...++
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~ 263 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD 263 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHh
Confidence 6778999998532 21111 10 011478999999999999999988755443 3335666778
Q ss_pred HcCceeeE
Q 012235 436 QFRYKKHK 443 (467)
Q Consensus 436 ~~Gf~~l~ 443 (467)
+.||+.+.
T Consensus 264 ~~~~~~~~ 271 (315)
T 1ixk_A 264 NFDVELLP 271 (315)
T ss_dssp HSSEEEEC
T ss_pred cCCCEEec
Confidence 88876543
No 134
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.22 E-value=2.7e-11 Score=122.40 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=95.1
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
.+|||||||+|.++..++++ +.++++ +|+ +.+++.+++...+.++.+|+.. +++ .||+|++..+++||.+..
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~~~d~~ 263 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIV--FDR-PQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKD 263 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEE--EEC-HHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEE--eeC-HHHHhhcccCCCcEEEeccccC-CCC--CccEEEeehhhccCCHHH
Confidence 38999999999999999987 567777 666 7787777655558899999865 554 399999999997786652
Q ss_pred hHHHHHHHHHhccCC---CcEEEEEecccCCC-------------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 397 LLDFILFDWDRILRP---GGLLWIDRFFCNKK-------------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 397 ~l~~~L~el~RvLKP---GG~LiI~~~~~~~~-------------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
...+++++.++||| ||++++.++..+.. ..+++.+++++.||+.++...
T Consensus 264 -~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 264 -CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp -HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred -HHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 45899999999999 99999987654321 124788889999998876543
No 135
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.22 E-value=1.4e-10 Score=113.19 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=90.7
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++++|.... +++++||+|+++.....
T Consensus 112 ~vLDlG~GsG~~~~~la~~~~~~~v~~--vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 112 RILDLGTGTGAIALALASERPDCEIIA--VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYID 188 (276)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBC
T ss_pred EEEEecCCccHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCCC
Confidence 8999999999999999965 678888 78888888877653 3 377888887663 44678999999854321
Q ss_pred c------------cc----------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEE
Q 012235 392 W------------LD----------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 392 ~------------~~----------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
. .+ ......++.++.++|||||++++... ....+.+.+++++.||..+....
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG---WQQGEAVRQAFILAGYHDVETCR 262 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---SSCHHHHHHHHHHTTCTTCCEEE
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---chHHHHHHHHHHHCCCcEEEEEe
Confidence 1 11 02346889999999999999998643 23455788889999998776543
No 136
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.22 E-value=1.5e-10 Score=117.56 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=96.9
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCccCCCccceEEecccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
.++|+|||||+|.++..++++...+.++..|. +.+++.++++ +.+.++.+|+...|.+ .+|+|++..++++
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~ 256 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLHD 256 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGGG
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeeccc
Confidence 34899999999999999999855544444665 5677776653 3488999998766543 4799999999987
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCC-----------------------CHHHHHHHHHHcCceeeEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK-----------------------DLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~-----------------------~~~~~~~~i~~~Gf~~l~W~ 445 (467)
|.++. ...+|+++.++|+|||.++|.+...+.+ ..++|.+++++.||+.++..
T Consensus 257 ~~d~~-~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~ 332 (353)
T 4a6d_A 257 WADGK-CSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332 (353)
T ss_dssp SCHHH-HHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHH-HHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 87664 4688999999999999999988765432 23478899999999988754
No 137
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.22 E-value=4e-11 Score=119.91 Aligned_cols=99 Identities=8% Similarity=0.110 Sum_probs=78.8
Q ss_pred HhcCCCCCCceEEEECCCccHHHHH-Hhh-CCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAAR-MRE-QNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~-La~-~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFD 381 (467)
++.+.++. +|||||||+|.++.. +++ .|.+|++ +|+++.|++.|+++ + .+.++++|+..++ +++||
T Consensus 117 la~l~~g~--rVLDIGcG~G~~ta~~lA~~~ga~V~g--IDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FD 190 (298)
T 3fpf_A 117 LGRFRRGE--RAVFIGGGPLPLTGILLSHVYGMRVNV--VEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFD 190 (298)
T ss_dssp HTTCCTTC--EEEEECCCSSCHHHHHHHHTTCCEEEE--EESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCS
T ss_pred HcCCCCcC--EEEEECCCccHHHHHHHHHccCCEEEE--EECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcC
Confidence 56777777 999999999977644 454 3888999 77788888888654 4 4789999988876 78999
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|++.... .+ ...++.++.|+|||||.|++...
T Consensus 191 vV~~~a~~---~d---~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 191 VLMVAALA---EP---KRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEECTTC---SC---HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEECCCc---cC---HHHHHHHHHHHcCCCcEEEEEcC
Confidence 99986542 22 36899999999999999999764
No 138
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.22 E-value=5.9e-11 Score=116.61 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=93.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||+|||+|.++..+++.+.. |++ +|+++.+++.++++ + .+.++++|+..++. +++||+|+
T Consensus 123 ~~~~~--~VLDlgcG~G~~~~~la~~~~~~V~~--vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi 197 (278)
T 2frn_A 123 AKPDE--LVVDMFAGIGHLSLPIAVYGKAKVIA--IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CCTTC--EEEETTCTTTTTHHHHHHHTCCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred CCCCC--EEEEecccCCHHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEE
Confidence 34465 8999999999999999998764 888 88888888877653 3 26688999988876 78999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc----CCCCHHHHHHHHHHcCceeeE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC----NKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~----~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
++.... ...++.++.++|||||.+++.++.. ..+..+.+.+.+++.|+....
T Consensus 198 ~~~p~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 198 MGYVVR-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ECCCSS-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ECCchh-------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 975531 1368899999999999999977653 234455778888998886543
No 139
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.21 E-value=1.3e-11 Score=117.27 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=76.7
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCC-c--cCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRL-P--FFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~L-p--f~d~sFDlVis~~~ 388 (467)
+|||||||+|.++..+++. +..|+| +|+++.+++.+.++ + .+.++.+|+..+ + +++++||.|++++.
T Consensus 37 ~vLDiGcG~G~~~~~lA~~~p~~~v~g--iD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~ 114 (218)
T 3dxy_A 37 VTLEIGFGMGASLVAMAKDRPEQDFLG--IEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP 114 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred eEEEEeeeChHHHHHHHHHCCCCeEEE--EEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence 8999999999999999987 456888 88889888877543 3 378888998774 4 67899999999876
Q ss_pred cccccchhhH------HHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLL------DFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l------~~~L~el~RvLKPGG~LiI~~ 419 (467)
. .|...... ..++.++.|+|||||.|++.+
T Consensus 115 ~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 115 D-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp C-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 5 44433211 259999999999999999965
No 140
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.21 E-value=1.3e-11 Score=113.57 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=77.5
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCC-----CccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFD-----NTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d-----~sFDlVis~~ 387 (467)
+|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+.++++|+.. ++++ ++||+|+++.
T Consensus 33 ~vLDiG~G~G~~~~~l~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~np 109 (215)
T 4dzr_A 33 RVIDVGTGSGCIAVSIALACPGVSVTA--VDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVSNP 109 (215)
T ss_dssp EEEEEESSBCHHHHHHHHHCTTEEEEE--EECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEECC
T ss_pred EEEEecCCHhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEECC
Confidence 8999999999999999998 557887 66777777777643 2 35677777666 5555 8999999976
Q ss_pred cccccc------chh-----------------hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH--HcCceee
Q 012235 388 FMDGWL------DML-----------------LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL--QFRYKKH 442 (467)
Q Consensus 388 ~L~h~~------~~~-----------------~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~--~~Gf~~l 442 (467)
.+.+.. ... .+..++.++.++|||||++++.... ....+.+.+.++ +.||..+
T Consensus 110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 110 PYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG--HNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT--TSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC--CccHHHHHHHHHHhhcCCceE
Confidence 552211 110 0157889999999999994443332 334557788888 8888777
Q ss_pred EEEEc
Q 012235 443 KWAIS 447 (467)
Q Consensus 443 ~W~~~ 447 (467)
.....
T Consensus 188 ~~~~~ 192 (215)
T 4dzr_A 188 RKVKD 192 (215)
T ss_dssp CEEEC
T ss_pred EEEEe
Confidence 65433
No 141
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.20 E-value=5e-11 Score=112.28 Aligned_cols=123 Identities=16% Similarity=0.300 Sum_probs=87.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC-C
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR-L 373 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~-L 373 (467)
..+..++...++. +|||||||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+.. +
T Consensus 48 ~~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 123 (221)
T 3u81_A 48 QIMDAVIREYSPS--LVLELGAYCGYSAVRMARLLQPGARLLT--MEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI 123 (221)
T ss_dssp HHHHHHHHHHCCS--EEEEECCTTSHHHHHHHTTSCTTCEEEE--EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred HHHHHHHHhcCCC--EEEEECCCCCHHHHHHHHhCCCCCEEEE--EeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH
Confidence 3455555554554 8999999999999999984 678888 67778888777652 3 37888998644 3
Q ss_pred ccCC-----CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 374 PFFD-----NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 374 pf~d-----~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
+... ++||+|++.....++.+. ..++..+ ++|||||.+++.+..... ...+.+.+...
T Consensus 124 ~~~~~~~~~~~fD~V~~d~~~~~~~~~---~~~~~~~-~~LkpgG~lv~~~~~~~~--~~~~~~~l~~~ 186 (221)
T 3u81_A 124 PQLKKKYDVDTLDMVFLDHWKDRYLPD---TLLLEKC-GLLRKGTVLLADNVIVPG--TPDFLAYVRGS 186 (221)
T ss_dssp GGTTTTSCCCCCSEEEECSCGGGHHHH---HHHHHHT-TCCCTTCEEEESCCCCCC--CHHHHHHHHHC
T ss_pred HHHHHhcCCCceEEEEEcCCcccchHH---HHHHHhc-cccCCCeEEEEeCCCCcc--hHHHHHHHhhC
Confidence 3322 789999998877555433 3567777 999999999997766433 23455555543
No 142
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.20 E-value=3.5e-11 Score=117.44 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=91.4
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----C--CccEEEccCCCCccCC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----g--~i~~~~~d~~~Lpf~d 377 (467)
...+.+.++. +|||+|||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|+.. ++++
T Consensus 103 ~~~~~~~~~~--~VLD~G~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~ 177 (275)
T 1yb2_A 103 IMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTV--VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISD 177 (275)
T ss_dssp ---CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEE--ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCS
T ss_pred HHHcCCCCcC--EEEEecCCCCHHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcC
Confidence 3444566665 8999999999999999987 678888 77888888877653 3 37788888877 6667
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
++||+|++. +.+. ..++.++.++|||||.+++.+... +..+.+.+.++..||..+..
T Consensus 178 ~~fD~Vi~~-----~~~~---~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 178 QMYDAVIAD-----IPDP---WNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp CCEEEEEEC-----CSCG---GGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEEEEEE
T ss_pred CCccEEEEc-----CcCH---HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCeEEEE
Confidence 899999983 3333 478999999999999999977543 12346667778889876544
No 143
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.20 E-value=5.5e-11 Score=116.92 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=80.9
Q ss_pred CceEEEECCCc---cHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCc-----------cCC
Q 012235 318 TRIGLDFGVGT---GTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLP-----------FFD 377 (467)
Q Consensus 318 ~r~VLDIGCGt---G~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lp-----------f~d 377 (467)
.++|||||||+ |.++..+.+. +.+|++ +|+++.|++.++++ +.+.++.+|+.+.+ ++.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~--vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVY--VDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEE--EESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEE--EECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 34899999999 9888776654 678888 67779999888764 35889999986532 222
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.+||+|++..+++|+.+. ....++.++.++|||||+|++.++..
T Consensus 156 ~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 589999999999555553 46799999999999999999988765
No 144
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.19 E-value=5.8e-11 Score=111.75 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=80.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCCCccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+.+.+.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.+.++. .+.++.+|.......+++||+
T Consensus 62 ~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 137 (231)
T 1vbf_A 62 MLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVS--VEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (231)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--EESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHhcCCCCCC--EEEEEcCCCCHHHHHHHHHcCEEEE--EeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence 44455566665 8999999999999999998888888 677788888887652 478888888763334689999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
|++..+++|+. .++.++|||||.+++....
T Consensus 138 v~~~~~~~~~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 138 VVVWATAPTLL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEESSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred EEECCcHHHHH---------HHHHHHcCCCcEEEEEEcC
Confidence 99999995543 3688999999999997643
No 145
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.19 E-value=6.7e-11 Score=112.94 Aligned_cols=124 Identities=12% Similarity=0.106 Sum_probs=81.9
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCC-HHHHHHH---HH----cC--CccEEEccCCCCccC-CCccceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLG-APFNEMI---AL----RG--LIPLYVTLNQRLPFF-DNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS-~~~l~~a---~~----rg--~i~~~~~d~~~Lpf~-d~sFDlVis~ 386 (467)
+|||||||+|.++..++++ +..|+| +|+| +.|++.+ ++ .+ .+.++++++..+|.. .+.+|.|+++
T Consensus 27 ~vLDiGCG~G~~~~~la~~~~~~~v~G--vD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~ 104 (225)
T 3p2e_A 27 VHIDLGTGDGRNIYKLAINDQNTFYIG--IDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL 104 (225)
T ss_dssp EEEEETCTTSHHHHHHHHTCTTEEEEE--ECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE
T ss_pred EEEEEeccCcHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe
Confidence 8999999999999999954 667787 7788 6676665 32 23 367889999888632 2445555554
Q ss_pred cccc----cccchhhHHHHHHHHHhccCCCcEEEEEecccCC-------------CCHH-----HHHHHHHHcCceeeEE
Q 012235 387 GFMD----GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK-------------KDLD-----DYMYMFLQFRYKKHKW 444 (467)
Q Consensus 387 ~~L~----h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-------------~~~~-----~~~~~i~~~Gf~~l~W 444 (467)
+... |+... ...++.++.|+|||||.|++....... .... ++.+.+++.||.....
T Consensus 105 ~~~~~~~~~~~~~--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 105 FPWGTLLEYVIKP--NRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp SCCHHHHHHHHTT--CHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred CCCcHHhhhhhcc--hHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 4321 11111 146899999999999999983211110 0111 2778889999987655
Q ss_pred EEc
Q 012235 445 AIS 447 (467)
Q Consensus 445 ~~~ 447 (467)
...
T Consensus 183 ~~~ 185 (225)
T 3p2e_A 183 KEL 185 (225)
T ss_dssp EEE
T ss_pred eec
Confidence 433
No 146
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.19 E-value=3.2e-11 Score=123.71 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=78.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
..++. +|||+|||+|.++..+++.|. .|+++| ++ .|++.+++ .+ .+.++++|+..++++ ++||+|+
T Consensus 61 ~~~~~--~VLDlGcGtG~ls~~la~~g~~~V~gvD--~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv 134 (376)
T 3r0q_C 61 HFEGK--TVLDVGTGSGILAIWSAQAGARKVYAVE--AT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVII 134 (376)
T ss_dssp TTTTC--EEEEESCTTTHHHHHHHHTTCSEEEEEE--SS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEE
T ss_pred cCCCC--EEEEeccCcCHHHHHHHhcCCCEEEEEc--cH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEE
Confidence 34444 899999999999999999987 899955 55 56665543 23 378999999998876 8999999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+....+.......++.++.++.++|||||.+++..
T Consensus 135 ~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 135 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp ECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 97755333333335789999999999999997743
No 147
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.18 E-value=4.8e-11 Score=107.80 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=79.0
Q ss_pred HHhc-CCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC-CccCCC
Q 012235 309 DILA-IKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR-LPFFDN 378 (467)
Q Consensus 309 ~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~-Lpf~d~ 378 (467)
+.+. ..++. +|||+|||+|.++..+++++ ..|++ +|+++.+++.++++ + .+.++.+|+.. ++..++
T Consensus 24 ~~l~~~~~~~--~vLDlGcG~G~~~~~l~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 24 NMIGPYFNGG--RVLDLFAGSGGLAIEAVSRGMSAAVL--VEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHCSCCCSC--EEEEETCTTCHHHHHHHHTTCCEEEE--ECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHhhcCCC--eEEEeCCCCCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 3343 44555 89999999999999999885 57888 77888888887653 2 36788888766 454567
Q ss_pred ccceEEeccccccccchhhHHHHHHHHH--hccCCCcEEEEEeccc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWD--RILRPGGLLWIDRFFC 422 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~--RvLKPGG~LiI~~~~~ 422 (467)
+||+|+++..+ +... .+..+..+. ++|+|||.+++.....
T Consensus 100 ~fD~i~~~~~~-~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPY-AKET---IVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSS-HHHH---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCC-Ccch---HHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 89999998776 3222 346677776 9999999999976544
No 148
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.18 E-value=5.7e-11 Score=119.53 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=78.5
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDl 382 (467)
+...++. +|||+|||+|.++..+++.|. .|+++|++ ++++.+++ .+ .+.++.+|+..+++++++||+
T Consensus 34 ~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~~vD~s---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 108 (328)
T 1g6q_1 34 KDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMS---SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI 108 (328)
T ss_dssp HHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESS---THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred HhhcCCC--EEEEecCccHHHHHHHHHCCCCEEEEEChH---HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccE
Confidence 3444555 899999999999999999875 89996554 36665543 23 378999999999888889999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
|++.....++.....++.++.++.|+|||||.++.
T Consensus 109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 99986544433333457899999999999999874
No 149
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.17 E-value=8.8e-11 Score=112.34 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=93.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf 375 (467)
.+...+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 84 ~i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~--~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 158 (255)
T 3mb5_A 84 LIVAYAGISPGD--FIVEAGVGSGALTLFLANIVGPEGRVVS--YEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-I 158 (255)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-C
T ss_pred HHHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCCCeEEEE--EecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-c
Confidence 344556666766 8999999999999999988 678888 77888888877654 3 277888887754 6
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC--ceeeE
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR--YKKHK 443 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G--f~~l~ 443 (467)
++++||+|+++.. +. ..++.++.++|||||.+++..+.. +....+.+.+++.| |..+.
T Consensus 159 ~~~~~D~v~~~~~-----~~---~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~g~~f~~~~ 218 (255)
T 3mb5_A 159 EEENVDHVILDLP-----QP---ERVVEHAAKALKPGGFFVAYTPCS--NQVMRLHEKLREFKDYFMKPR 218 (255)
T ss_dssp CCCSEEEEEECSS-----CG---GGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHTGGGBSCCE
T ss_pred CCCCcCEEEECCC-----CH---HHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCccccE
Confidence 6788999998532 22 368999999999999999876433 23446778888888 86554
No 150
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.17 E-value=3.6e-11 Score=112.22 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=75.6
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc--------CCccEEEccCCCCcc--CCCc-cceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR--------GLIPLYVTLNQRLPF--FDNT-MDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r--------g~i~~~~~d~~~Lpf--~d~s-FDlVis~~ 387 (467)
+|||+|||+|.++..++.++. .|++ +|+++.+++.++++ ..+.++.+|+..+.. .+++ ||+|+++.
T Consensus 56 ~vLDlGcGtG~~~~~~~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSRQAKKVTF--LELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEEEcCCccCHHHHHHHHccCCEEEE--EECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 899999999999998877764 7888 78888898887653 246788888766532 3678 99999988
Q ss_pred ccccccchhhHHHHHHHH--HhccCCCcEEEEEeccc
Q 012235 388 FMDGWLDMLLLDFILFDW--DRILRPGGLLWIDRFFC 422 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el--~RvLKPGG~LiI~~~~~ 422 (467)
.+ +... ...++.++ .|+|||||.+++.....
T Consensus 134 ~~-~~~~---~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 134 PF-HFNL---AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CS-SSCH---HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CC-CCcc---HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 85 4322 36788888 77899999999976543
No 151
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.17 E-value=5.9e-11 Score=117.32 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=76.0
Q ss_pred ceEEEECCCccH----HHHHHhhC------CCEEEEEecCCCHHHHHHHHHc----------------------------
Q 012235 319 RIGLDFGVGTGT----FAARMREQ------NVTIVSTALNLGAPFNEMIALR---------------------------- 360 (467)
Q Consensus 319 r~VLDIGCGtG~----~a~~La~~------g~~V~gvdiDiS~~~l~~a~~r---------------------------- 360 (467)
.+|||+|||+|. ++..|++. +.+|+| +|+|+.|++.|++.
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~a--tDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFA--SDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEE--EESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEE--EECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 379999999997 56666654 357777 77889999988753
Q ss_pred ---------CCccEEEccCCCCccC-CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 361 ---------GLIPLYVTLNQRLPFF-DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 361 ---------g~i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
..+.|.++|....|++ .+.||+|+|..++.|+. +...+.++.++.++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 1366778888776664 57899999999996554 44467999999999999999998
No 152
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.16 E-value=3.9e-10 Score=109.61 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=90.9
Q ss_pred hHHH-HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc-------C---CccEEEcc
Q 012235 303 VDFL-ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR-------G---LIPLYVTL 369 (467)
Q Consensus 303 ~d~~-I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r-------g---~i~~~~~d 369 (467)
.|.. +..++...++. +|||+|||+|.++..++++. ..+++ +|+++.+++.++++ + .+.++++|
T Consensus 23 ~D~~lL~~~~~~~~~~--~VLDlG~G~G~~~l~la~~~~~~~v~g--vDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D 98 (260)
T 2ozv_A 23 MDAMLLASLVADDRAC--RIADLGAGAGAAGMAVAARLEKAEVTL--YERSQEMAEFARRSLELPDNAAFSARIEVLEAD 98 (260)
T ss_dssp CHHHHHHHTCCCCSCE--EEEECCSSSSHHHHHHHHHCTTEEEEE--EESSHHHHHHHHHHTTSGGGTTTGGGEEEEECC
T ss_pred cHHHHHHHHhcccCCC--EEEEeCChHhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHHHhhhhCCCcceEEEEeCC
Confidence 4443 33444555554 89999999999999999884 56777 77778888887653 1 26788999
Q ss_pred CCCC-------ccCCCccceEEeccccccc---------------cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCH
Q 012235 370 NQRL-------PFFDNTMDLIHTTGFMDGW---------------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDL 427 (467)
Q Consensus 370 ~~~L-------pf~d~sFDlVis~~~L~h~---------------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~ 427 (467)
+..+ ++++++||+|+++..+... .....++.++.++.++|||||.|++.... +..
T Consensus 99 ~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~ 175 (260)
T 2ozv_A 99 VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP---QSV 175 (260)
T ss_dssp TTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG---GGH
T ss_pred HHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH---HHH
Confidence 8877 2567899999998544211 11122568899999999999999986532 234
Q ss_pred HHHHHHHHHcCceee
Q 012235 428 DDYMYMFLQFRYKKH 442 (467)
Q Consensus 428 ~~~~~~i~~~Gf~~l 442 (467)
.++.+.+++. |...
T Consensus 176 ~~~~~~l~~~-~~~~ 189 (260)
T 2ozv_A 176 AEIIAACGSR-FGGL 189 (260)
T ss_dssp HHHHHHHTTT-EEEE
T ss_pred HHHHHHHHhc-CCce
Confidence 4566666653 5433
No 153
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.16 E-value=6.9e-11 Score=113.68 Aligned_cols=97 Identities=19% Similarity=0.293 Sum_probs=74.4
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------C--CccEEEccCCC-Cc--cCCCccce
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------G--LIPLYVTLNQR-LP--FFDNTMDL 382 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g--~i~~~~~d~~~-Lp--f~d~sFDl 382 (467)
+|||||||+|.++..|++. +..++| +|+++.|++.+.++ + .+.++++|+.. ++ +++++||.
T Consensus 49 ~vLDiGcG~G~~~~~la~~~p~~~v~G--iDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 49 EFADIGCGYGGLLVELSPLFPDTLILG--LEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp EEEEETCTTCHHHHHHGGGSTTSEEEE--EESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred eEEEEccCCcHHHHHHHHHCCCCeEEE--EECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 8999999999999999987 567888 78888888776531 2 37889999886 66 77899999
Q ss_pred EEeccccccccchh------hHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDML------LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~------~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|++.+.- .|.... ....++.++.++|||||.|++.+
T Consensus 127 v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 127 MFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 9987654 332110 01369999999999999999865
No 154
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.15 E-value=5.6e-11 Score=120.34 Aligned_cols=120 Identities=12% Similarity=0.079 Sum_probs=92.9
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|||||||+|.++..++++ +.++++ +|+ +.+++.+.+...+.++.+|+.. +++ .||+|++..+++||.+..
T Consensus 196 ~vlDvG~G~G~~~~~l~~~~p~~~~~~--~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~- 268 (358)
T 1zg3_A 196 SLVDVGGGTGGVTKLIHEIFPHLKCTV--FDQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQ- 268 (358)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEE--EEC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH-
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEE--ecc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHH-
Confidence 8999999999999999987 456666 566 5676665543348889999877 664 499999999997776652
Q ss_pred HHHHHHHHHhccCC---CcEEEEEecccCCC--------------------------CHHHHHHHHHHcCceeeEEEE
Q 012235 398 LDFILFDWDRILRP---GGLLWIDRFFCNKK--------------------------DLDDYMYMFLQFRYKKHKWAI 446 (467)
Q Consensus 398 l~~~L~el~RvLKP---GG~LiI~~~~~~~~--------------------------~~~~~~~~i~~~Gf~~l~W~~ 446 (467)
...+++++.++||| ||++++.++..+.. ..++|.+++++.||+.++...
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 45899999999999 99999987654321 234778889999998877544
No 155
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.15 E-value=2.6e-10 Score=104.28 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=87.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C----------CEEEEEecCCCHHHHHHHHHcCCccEE-EccCCCCc------
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N----------VTIVSTALNLGAPFNEMIALRGLIPLY-VTLNQRLP------ 374 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g----------~~V~gvdiDiS~~~l~~a~~rg~i~~~-~~d~~~Lp------ 374 (467)
+.++. +|||+|||+|.++..++++ + ..|+++|++.. + ....+.++ .+|....+
T Consensus 20 ~~~~~--~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~--~-----~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 20 LRPGL--RVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI--F-----PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CCTTC--EEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC--C-----CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc--c-----cCCCCeEEEeccCCCHHHHHHHH
Confidence 45555 8999999999999999987 4 67888555432 1 01236677 77766543
Q ss_pred --cCCCccceEEeccccc---cc-cchh----hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 375 --FFDNTMDLIHTTGFMD---GW-LDML----LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 375 --f~d~sFDlVis~~~L~---h~-~~~~----~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
+++++||+|++..+++ |+ .+.. ..+.++.++.++|||||.|++..+.. +....+...+... |..+.+
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~-f~~v~~ 167 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG--SQSRRLQRRLTEE-FQNVRI 167 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS--GGGHHHHHHHHHH-EEEEEE
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC--ccHHHHHHHHHHH-hcceEE
Confidence 3456899999976542 22 1110 01478999999999999999987643 2334566666665 666665
Q ss_pred EEccC---CCCceEEEEEeec
Q 012235 445 AISPK---SKDEVYLSALLEK 462 (467)
Q Consensus 445 ~~~~k---~~devyl~avlqK 462 (467)
..... ...|.|+.+.--|
T Consensus 168 ~~~~~~~~~~~e~~~v~~g~~ 188 (196)
T 2nyu_A 168 IKPEASRKESSEVYFLATQYH 188 (196)
T ss_dssp ECCC--------EEEEEEEEC
T ss_pred ECCcccCccCceEEEEeeecC
Confidence 43221 3456677665444
No 156
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.15 E-value=1.4e-10 Score=112.42 Aligned_cols=122 Identities=19% Similarity=0.141 Sum_probs=91.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc-----C----CccEEEccCCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR-----G----LIPLYVTLNQRLP 374 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r-----g----~i~~~~~d~~~Lp 374 (467)
+...+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.+.++ + .+.++++|+...+
T Consensus 91 i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 91 IVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVIS--YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 44555666776 8999999999999999986 578888 77788888777543 3 4788889988888
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH-cCceee
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ-FRYKKH 442 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~-~Gf~~l 442 (467)
+++++||+|++... +. ..++.++.++|+|||.+++..+.. +....+.+.+.. .+|...
T Consensus 167 ~~~~~~D~v~~~~~-----~~---~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~~~f~~~ 225 (280)
T 1i9g_A 167 LPDGSVDRAVLDML-----AP---WEVLDAVSRLLVAGGVLMVYVATV--TQLSRIVEALRAKQCWTEP 225 (280)
T ss_dssp CCTTCEEEEEEESS-----CG---GGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHHSSBCCC
T ss_pred CCCCceeEEEECCc-----CH---HHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHhcCCcCCc
Confidence 87889999998432 22 368999999999999999977543 223345555555 677544
No 157
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.15 E-value=1e-10 Score=120.65 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=81.2
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEeccccccc--
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW-- 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~-- 392 (467)
+|||+|||+|.++..+++++..|++ +|+++.+++.++++ + .+.++++|+...+..+++||+|+++.++++.
T Consensus 236 ~VLDlGcG~G~~~~~la~~g~~V~g--vDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~ 313 (381)
T 3dmg_A 236 QVLDLGAGYGALTLPLARMGAEVVG--VEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGA 313 (381)
T ss_dssp EEEEETCTTSTTHHHHHHTTCEEEE--EESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCS
T ss_pred EEEEEeeeCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhccc
Confidence 8999999999999999999999999 66778888777643 3 2789999999887777899999999988431
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
........++.++.++|||||.++++..
T Consensus 314 ~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 314 VILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp SCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 1223357899999999999999999653
No 158
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.14 E-value=1e-10 Score=105.86 Aligned_cols=101 Identities=12% Similarity=0.019 Sum_probs=75.7
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC----ccCCCccc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL----PFFDNTMD 381 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L----pf~d~sFD 381 (467)
.++. +|||+|||+|.++..+++++ ..|++ +|+++.+++.++++ + .+.++++|+... ++.+++||
T Consensus 43 ~~~~--~vLD~GcG~G~~~~~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD 118 (187)
T 2fhp_A 43 FDGG--MALDLYSGSGGLAIEAVSRGMDKSIC--IEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFD 118 (187)
T ss_dssp CSSC--EEEETTCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCC--CEEEeCCccCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCC
Confidence 3444 89999999999999888875 58888 66778888777543 3 377888887653 22368999
Q ss_pred eEEeccccccccchhhHHHHHHHH--HhccCCCcEEEEEeccc
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDW--DRILRPGGLLWIDRFFC 422 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el--~RvLKPGG~LiI~~~~~ 422 (467)
+|+++..+ +.... ...+..+ .++|+|||.+++.....
T Consensus 119 ~i~~~~~~-~~~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 119 LVLLDPPY-AKQEI---VSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EEEECCCG-GGCCH---HHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EEEECCCC-CchhH---HHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 99998875 43333 4566666 89999999999976544
No 159
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.13 E-value=2e-10 Score=106.16 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=81.2
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..+++. +..+++ +|+++.+++.+.++ +. +.++.+|+..++ ++++||+|++...-
T Consensus 68 ~vLDiG~G~G~~~~~l~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~~-- 142 (207)
T 1jsx_A 68 RFIDVGTGPGLPGIPLSIVRPEAHFTL--LDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA-- 142 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS--
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEeccC--
Confidence 8999999999999999976 678888 77778888777643 32 778899988776 46789999986531
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+ ...++.++.++|+|||.+++..... ..+.+.++++ ||..+.
T Consensus 143 --~---~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 143 --S---LNDMVSWCHHLPGEQGRFYALKGQM---PEDEIALLPE--EYQVES 184 (207)
T ss_dssp --S---HHHHHHHHTTSEEEEEEEEEEESSC---CHHHHHTSCT--TEEEEE
T ss_pred --C---HHHHHHHHHHhcCCCcEEEEEeCCC---chHHHHHHhc--CCceee
Confidence 1 3589999999999999999965322 2234444433 776554
No 160
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.13 E-value=5.1e-10 Score=115.07 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=80.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C-----CccEEEccCCCCc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G-----LIPLYVTLNQRLP 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g-----~i~~~~~d~~~Lp 374 (467)
.+.+.+...++. +|||+|||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|+.. +
T Consensus 213 ~ll~~l~~~~~~--~VLDlGcG~G~~s~~la~~~p~~~V~g--vD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~ 287 (375)
T 4dcm_A 213 FFMQHLPENLEG--EIVDLGCGNGVIGLTLLDKNPQAKVVF--VDESPMAVASSRLNVETNMPEALDRCEFMINNALS-G 287 (375)
T ss_dssp HHHHTCCCSCCS--EEEEETCTTCHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-T
T ss_pred HHHHhCcccCCC--eEEEEeCcchHHHHHHHHHCCCCEEEE--EECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-c
Confidence 344445444444 8999999999999999998 578888 67778888777642 3 25568888776 5
Q ss_pred cCCCccceEEeccccccc--cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 375 FFDNTMDLIHTTGFMDGW--LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~--~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++++||+|+++..+++. ........++.++.++|||||.++++.
T Consensus 288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 667899999999988431 222223578999999999999999965
No 161
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.12 E-value=1.6e-10 Score=117.19 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=78.9
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCcc
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+...++. +|||||||+|.++..+++.+. .|+++|+ ++ +++.+++ .+ .+.++.+|...++++ ++|
T Consensus 44 ~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~~vD~--s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~ 117 (348)
T 2y1w_A 44 QNHTDFKDK--IVLDVGCGSGILSFFAAQAGARKIYAVEA--ST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQV 117 (348)
T ss_dssp HTGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEEC--ST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCE
T ss_pred hccccCCcC--EEEEcCCCccHHHHHHHhCCCCEEEEECC--HH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-Cce
Confidence 334445555 899999999999999998865 8999555 43 5555543 23 378999999988764 689
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+|++...++|+.... ....+.++.++|||||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~-~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNER-MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTS-HHHHHHHGGGGEEEEEEEESC
T ss_pred eEEEEeCchhcCChHH-HHHHHHHHHhhcCCCeEEEEe
Confidence 9999998887776543 457788999999999999864
No 162
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.12 E-value=1.3e-10 Score=110.63 Aligned_cols=108 Identities=11% Similarity=0.174 Sum_probs=82.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhh--CCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c-
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMRE--QNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P- 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p- 374 (467)
.+..++...++. +|||||||+|..+..+++ .+..|++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 62 ~l~~~~~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 137 (232)
T 3ntv_A 62 LIKQLIRMNNVK--NILEIGTAIGYSSMQFASISDDIHVTT--IERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN 137 (232)
T ss_dssp HHHHHHHHHTCC--EEEEECCSSSHHHHHHHTTCTTCEEEE--EECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH
T ss_pred HHHHHHhhcCCC--EEEEEeCchhHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence 344455554555 899999999999999998 4678888 77778888777643 3 478999998653 4
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
..+++||+|++..... . ...++.++.++|||||.+++.+....
T Consensus 138 ~~~~~fD~V~~~~~~~----~--~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 138 VNDKVYDMIFIDAAKA----Q--SKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp HTTSCEEEEEEETTSS----S--HHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred hccCCccEEEEcCcHH----H--HHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 4478999999775432 1 35789999999999999999776553
No 163
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.12 E-value=1.9e-10 Score=107.00 Aligned_cols=101 Identities=25% Similarity=0.138 Sum_probs=77.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d 377 (467)
+.+.+.+.++. +|||+|||+|.++..+++.+ ..|++ +|+++.+++.++++ + .+.+..+|.......+
T Consensus 69 ~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 144 (215)
T 2yxe_A 69 MCELLDLKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVS--IERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPL 144 (215)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGG
T ss_pred HHHhhCCCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCC
Confidence 44455566665 89999999999999999874 78888 67778888877653 2 3778888874432236
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++||+|++..+++|+. .++.++|||||.+++...
T Consensus 145 ~~fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 145 APYDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CCEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEES
T ss_pred CCeeEEEECCchHHHH---------HHHHHHcCCCcEEEEEEC
Confidence 7899999999995443 378999999999999764
No 164
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=2.3e-10 Score=110.19 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=81.1
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC-Cc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR-LP 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~-Lp 374 (467)
.+..++...++. +|||||||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+.. ++
T Consensus 54 ~l~~l~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~ 129 (248)
T 3tfw_A 54 FLALLVRLTQAK--RILEIGTLGGYSTIWMARELPADGQLLT--LEADAHHAQVARENLQLAGVDQRVTLREGPALQSLE 129 (248)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTSHHHHHHHTTSCTTCEEEE--EECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHhhcCCC--EEEEecCCchHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444454555 8999999999999999987 678888 77778888777653 3 47888998765 34
Q ss_pred cC--CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 FF--DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 f~--d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.. .++||+|++..... ....++.++.++|||||++++.+....
T Consensus 130 ~~~~~~~fD~V~~d~~~~------~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 130 SLGECPAFDLIFIDADKP------NNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp TCCSCCCCSEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred hcCCCCCeEEEEECCchH------HHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 33 34899999866431 135789999999999999999876654
No 165
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.11 E-value=3.1e-10 Score=106.37 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=80.5
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 55 ~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 130 (225)
T 3tr6_A 55 LLALLVKLMQAK--KVIDIGTFTGYSAIAMGLALPKDGTLIT--CDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130 (225)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTSHHHHHHHTTCCTTCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHhhCCC--EEEEeCCcchHHHHHHHHhCCCCCEEEE--EeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHH
Confidence 344455554555 8999999999999999987 678888 77778888777653 2 377888887443 2
Q ss_pred cCC-----CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 FFD-----NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 f~d-----~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
... ++||+|++.... . ....++.++.++|||||++++.+....
T Consensus 131 ~~~~~~~~~~fD~v~~~~~~----~--~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 131 ELIHAGQAWQYDLIYIDADK----A--NTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp HHHTTTCTTCEEEEEECSCG----G--GHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred HhhhccCCCCccEEEECCCH----H--HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 212 789999976542 1 246789999999999999999877653
No 166
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.11 E-value=2.4e-10 Score=113.96 Aligned_cols=124 Identities=15% Similarity=0.043 Sum_probs=89.1
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCcc--CCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLPF--FDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lpf--~d~sFDlVi 384 (467)
.+|||||||+|.++..+++. ...|++ +|+++.+++.++++ ..+.++.+|+..++. .+++||+|+
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHGTVEHCDL--VDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCTTCCEEEE--EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 48999999999999999987 457888 66778888777653 237888999877654 478999999
Q ss_pred eccccccccchhhH--HHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeEEE
Q 012235 385 TTGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHKWA 445 (467)
Q Consensus 385 s~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~W~ 445 (467)
+.... ++.+...+ ..++.++.|+|||||.+++..... .......+.+.+++.||..+.-.
T Consensus 175 ~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 175 IDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 98766 33222112 478999999999999999965332 11233477888888999776543
No 167
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.10 E-value=7.5e-10 Score=108.77 Aligned_cols=124 Identities=7% Similarity=0.011 Sum_probs=84.4
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCC-CHHHHHHHHHcC----------------CccEEEccCCCC--
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNL-GAPFNEMIALRG----------------LIPLYVTLNQRL-- 373 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDi-S~~~l~~a~~rg----------------~i~~~~~d~~~L-- 373 (467)
.++. +|||+|||+|.++..+++.+. .|++ +|+ ++.+++.++++- .+.+...+....
T Consensus 78 ~~~~--~vLDlG~G~G~~~~~~a~~~~~~v~~--~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (281)
T 3bzb_A 78 IAGK--TVCELGAGAGLVSIVAFLAGADQVVA--TDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPD 153 (281)
T ss_dssp TTTC--EEEETTCTTSHHHHHHHHTTCSEEEE--EECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTH
T ss_pred cCCC--eEEEecccccHHHHHHHHcCCCEEEE--EeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccH
Confidence 3454 899999999999999998876 7888 667 677777665431 244554332221
Q ss_pred cc----CCCccceEEeccccccccchhhHHHHHHHHHhccC---C--CcEEEEEecccC-C--CCHHHHHHHHHHcC-ce
Q 012235 374 PF----FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILR---P--GGLLWIDRFFCN-K--KDLDDYMYMFLQFR-YK 440 (467)
Q Consensus 374 pf----~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLK---P--GG~LiI~~~~~~-~--~~~~~~~~~i~~~G-f~ 440 (467)
.+ .+++||+|++..+++|... ...++..+.++|+ | ||.+++..-... . .....+.+.+++.| |+
T Consensus 154 ~~~~~~~~~~fD~Ii~~dvl~~~~~---~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~ 230 (281)
T 3bzb_A 154 SLQRCTGLQRFQVVLLADLLSFHQA---HDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALI 230 (281)
T ss_dssp HHHHHHSCSSBSEEEEESCCSCGGG---HHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEE
T ss_pred HHHhhccCCCCCEEEEeCcccChHH---HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEE
Confidence 11 3678999999999865444 3689999999999 9 998776422211 1 12236777888899 86
Q ss_pred eeEE
Q 012235 441 KHKW 444 (467)
Q Consensus 441 ~l~W 444 (467)
....
T Consensus 231 v~~~ 234 (281)
T 3bzb_A 231 AEPW 234 (281)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5433
No 168
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.10 E-value=1.4e-10 Score=115.85 Aligned_cols=101 Identities=22% Similarity=0.157 Sum_probs=79.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC---EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNV---TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~---~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~ 376 (467)
.+.+.+.+.++. +|||||||+|.++..+++.+. .|++ +|+++.+++.++++ + .+.+..+|....+..
T Consensus 66 ~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~g--vD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 66 LFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVS--VEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 344556666776 999999999999999998754 4888 77778888877654 3 378889998876556
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++||+|++..+++|+. .++.++|||||.+++..
T Consensus 142 ~~~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp GCCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred CCCeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEE
Confidence 78999999999996544 46788999999999964
No 169
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.10 E-value=5.4e-10 Score=109.42 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=90.0
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf 375 (467)
..+..++...++. +|||+|||+|..+..+++. + ..|++ +|+++.+++.+.++ + .+.++++|+..++.
T Consensus 73 ~l~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a--vD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~ 148 (274)
T 3ajd_A 73 MIPPIVLNPREDD--FILDMCAAPGGKTTHLAQLMKNKGTIVA--VEISKTRTKALKSNINRMGVLNTIIINADMRKYKD 148 (274)
T ss_dssp GHHHHHHCCCTTC--EEEETTCTTCHHHHHHHHHTTTCSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH
T ss_pred HHHHHHhCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEE--ECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch
Confidence 3445667777776 8999999999999999974 4 68888 66778777776543 3 37788888877764
Q ss_pred ----CCCccceEEecccccc---------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHHHH
Q 012235 376 ----FDNTMDLIHTTGFMDG---------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYMFL 435 (467)
Q Consensus 376 ----~d~sFDlVis~~~L~h---------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~i~ 435 (467)
.+++||+|++...... |... .....++.++.++|||||.+++++......+ .+.+...++
T Consensus 149 ~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~ 228 (274)
T 3ajd_A 149 YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQ 228 (274)
T ss_dssp HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHH
T ss_pred hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHH
Confidence 2678999998732211 1000 1135789999999999999999887654443 334555554
Q ss_pred H
Q 012235 436 Q 436 (467)
Q Consensus 436 ~ 436 (467)
+
T Consensus 229 ~ 229 (274)
T 3ajd_A 229 K 229 (274)
T ss_dssp H
T ss_pred h
Confidence 4
No 170
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.10 E-value=3.8e-10 Score=114.02 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=81.2
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDN 378 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~ 378 (467)
.+.+.+...++. +|||+|||+|.++..+++.+ ..|++ +|+++.+++.++++ +. +.++.+|....+ ++
T Consensus 187 ~ll~~l~~~~~~--~VLDlGcG~G~~~~~la~~~~~~~v~~--vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~ 260 (343)
T 2pjd_A 187 LLLSTLTPHTKG--KVLDVGCGAGVLSVAFARHSPKIRLTL--CDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KG 260 (343)
T ss_dssp HHHHHSCTTCCS--BCCBTTCTTSHHHHHHHHHCTTCBCEE--EESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CS
T ss_pred HHHHhcCcCCCC--eEEEecCccCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cC
Confidence 344444433444 79999999999999999885 47888 77778888777653 32 557777776543 78
Q ss_pred ccceEEeccccccc--cchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 379 TMDLIHTTGFMDGW--LDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 379 sFDlVis~~~L~h~--~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+||+|+++.++++. ........++.++.|+|||||.+++....
T Consensus 261 ~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 261 RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 99999999988321 12233578999999999999999997643
No 171
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.09 E-value=1.1e-10 Score=108.90 Aligned_cols=96 Identities=8% Similarity=0.041 Sum_probs=75.2
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC-CccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR-LPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~-Lpf~d~sFDlVis~~~L~h 391 (467)
+|||+|||+|.++..++.++. .|++ +|+++.+++.++++ + .+.++++|+.. ++..+++||+|+++..+ +
T Consensus 57 ~vLDlgcG~G~~~~~l~~~~~~~V~~--vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~-~ 133 (202)
T 2fpo_A 57 QCLDCFAGSGALGLEALSRYAAGATL--IEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF-R 133 (202)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-S
T ss_pred eEEEeCCCcCHHHHHHHhcCCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC-C
Confidence 899999999999999887764 7888 78889998887653 3 47888888766 46667899999998775 4
Q ss_pred ccchhhHHHHHHHHHh--ccCCCcEEEEEecc
Q 012235 392 WLDMLLLDFILFDWDR--ILRPGGLLWIDRFF 421 (467)
Q Consensus 392 ~~~~~~l~~~L~el~R--vLKPGG~LiI~~~~ 421 (467)
... ...++.++.+ +|+|||.+++....
T Consensus 134 ~~~---~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 RGL---LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp TTT---HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCc---HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 332 3567777765 69999999987644
No 172
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.09 E-value=3e-10 Score=110.72 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=91.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFF 376 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~ 376 (467)
+...+.+.++. +|||+|||+|.++..+++. +..+++ +|+++.+++.+.++ + .+.++.+|+... ++
T Consensus 104 i~~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 104 IAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFA--YEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEE--ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CS
T ss_pred HHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEE--EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-cc
Confidence 44455666666 8999999999999999987 467887 77888888877654 3 367888887765 56
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
+++||+|+++.. +. ..++.++.++|+|||.+++..... +....+.+.++..||..+.
T Consensus 179 ~~~~D~V~~~~~-----~~---~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 179 EKDVDALFLDVP-----DP---WNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIE 235 (277)
T ss_dssp CCSEEEEEECCS-----CG---GGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEE
T ss_pred CCccCEEEECCc-----CH---HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceeE
Confidence 678999998532 22 368999999999999999977532 2334677778888997553
No 173
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.09 E-value=8.4e-11 Score=112.95 Aligned_cols=122 Identities=15% Similarity=0.063 Sum_probs=84.8
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC------CCEEEEEecCCCHHHHHHHHHc-CCccEEEccCCCC---cc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ------NVTIVSTALNLGAPFNEMIALR-GLIPLYVTLNQRL---PF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------g~~V~gvdiDiS~~~l~~a~~r-g~i~~~~~d~~~L---pf 375 (467)
.+..++...++. +|||||||+|..+..|++. +.+|++ +|+++.+++.++.. ..+.++++|+..+ +.
T Consensus 72 ~l~~~l~~~~~~--~VLDiG~GtG~~t~~la~~~~~~~~~~~V~g--vD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~ 147 (236)
T 2bm8_A 72 VYHDMLWELRPR--TIVELGVYNGGSLAWFRDLTKIMGIDCQVIG--IDRDLSRCQIPASDMENITLHQGDCSDLTTFEH 147 (236)
T ss_dssp HHHHHHHHHCCS--EEEEECCTTSHHHHHHHHHHHHTTCCCEEEE--EESCCTTCCCCGGGCTTEEEEECCSSCSGGGGG
T ss_pred HHHHHHHhcCCC--EEEEEeCCCCHHHHHHHHhhhhcCCCCEEEE--EeCChHHHHHHhccCCceEEEECcchhHHHHHh
Confidence 344555544444 8999999999999999886 678888 55556665554432 3488999998874 54
Q ss_pred CC-CccceEEeccccccccchhhHHHHHHHHHh-ccCCCcEEEEEecc--cCCCCHHHHHHHHHHc
Q 012235 376 FD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDR-ILRPGGLLWIDRFF--CNKKDLDDYMYMFLQF 437 (467)
Q Consensus 376 ~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~R-vLKPGG~LiI~~~~--~~~~~~~~~~~~i~~~ 437 (467)
.+ .+||+|++... |. ....++.++.| +|||||+|++.++. ........+.++++..
T Consensus 148 ~~~~~fD~I~~d~~--~~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 148 LREMAHPLIFIDNA--HA----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF 207 (236)
T ss_dssp GSSSCSSEEEEESS--CS----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred hccCCCCEEEECCc--hH----hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence 44 47999998765 32 24679999998 99999999996531 1122233566666665
No 174
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.09 E-value=2e-10 Score=108.74 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=83.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-cc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-PF 375 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-pf 375 (467)
.+..++...++. +|||+|||+|.++..+++. +..|++ +|+++.+++.++++ + .+.++.+|+... +.
T Consensus 45 ~l~~~~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 120 (233)
T 2gpy_A 45 SLLHLLKMAAPA--RILEIGTAIGYSAIRMAQALPEATIVS--IERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK 120 (233)
T ss_dssp HHHHHHHHHCCS--EEEEECCTTSHHHHHHHHHCTTCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH
T ss_pred HHHHHHhccCCC--EEEEecCCCcHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence 444555555555 8999999999999999987 678888 77888888877654 3 377888887664 44
Q ss_pred C--CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 376 F--DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 376 ~--d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
. +++||+|++..... ....++.++.++|||||.+++.+....
T Consensus 121 ~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAKG------QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp HTTSCCEEEEEEEGGGS------CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred cccCCCccEEEECCCHH------HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 3 57899999987752 236799999999999999999865443
No 175
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.09 E-value=9.4e-11 Score=104.33 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=74.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCC-cc-C--CCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRL-PF-F--DNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~L-pf-~--d~sFDlVis~~~L~ 390 (467)
+|||+|||+|.++..+++++..+++ +|+++.+++.++++ + .+.++++|+... +. . +++||+|+++.++
T Consensus 44 ~vLD~GcG~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~- 120 (171)
T 1ws6_A 44 RFLDPFAGSGAVGLEAASEGWEAVL--VEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY- 120 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCEEEE--ECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT-
T ss_pred eEEEeCCCcCHHHHHHHHCCCeEEE--EeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC-
Confidence 8999999999999999999888777 77888888877653 3 477888887663 22 1 3489999999876
Q ss_pred cccchhhHHHHHHHHH--hccCCCcEEEEEecccC
Q 012235 391 GWLDMLLLDFILFDWD--RILRPGGLLWIDRFFCN 423 (467)
Q Consensus 391 h~~~~~~l~~~L~el~--RvLKPGG~LiI~~~~~~ 423 (467)
+ ... +..+..+. ++|||||.+++......
T Consensus 121 ~-~~~---~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 121 A-MDL---AALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp T-SCT---THHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred c-hhH---HHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 3 222 35666666 99999999999776543
No 176
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.08 E-value=7.4e-11 Score=115.89 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=71.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------C-CccEE--EccCCCCccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------G-LIPLY--VTLNQRLPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g-~i~~~--~~d~~~Lpf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..++++ ..|+++|++. |...+.++ + .+.++ ++|+..++ +++||+
T Consensus 72 ~~~g~--~VLDlGcGtG~~s~~la~~-~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~ 143 (265)
T 2oxt_A 72 VELTG--RVVDLGCGRGGWSYYAASR-PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDV 143 (265)
T ss_dssp CCCCE--EEEEESCTTSHHHHHHHTS-TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSE
T ss_pred CCCCC--EEEEeCcCCCHHHHHHHHc-CcEEEEECch---hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcE
Confidence 45555 8999999999999999988 7899966653 32111111 1 36677 78888876 789999
Q ss_pred EEeccccccccc----hhhHHHHHHHHHhccCCCc--EEEEEecc
Q 012235 383 IHTTGFMDGWLD----MLLLDFILFDWDRILRPGG--LLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~~~----~~~l~~~L~el~RvLKPGG--~LiI~~~~ 421 (467)
|+|..+ .+... ......++.++.++||||| .|++..+.
T Consensus 144 V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 144 IMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 999876 22211 1101137899999999999 99997765
No 177
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.08 E-value=6.5e-10 Score=104.15 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=79.9
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +.++++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 49 ~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 124 (223)
T 3duw_A 49 FLQLLVQIQGAR--NILEIGTLGGYSTIWLARGLSSGGRVVT--LEASEKHADIARSNIERANLNDRVEVRTGLALDSLQ 124 (223)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTSHHHHHHHTTCCSSCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHhhCCC--EEEEecCCccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444555555 8999999999999999988 678888 66778887777543 3 378888887543 2
Q ss_pred -cC---CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 -FF---DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 -f~---d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+. .++||+|++..... ....++.++.++|||||.+++.+....
T Consensus 125 ~~~~~~~~~fD~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 125 QIENEKYEPFDFIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp HHHHTTCCCCSEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred HHHhcCCCCcCEEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 11 26799999876542 135789999999999999999876654
No 178
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.07 E-value=6.3e-10 Score=106.63 Aligned_cols=99 Identities=10% Similarity=-0.043 Sum_probs=74.4
Q ss_pred ceEEEECCCccHHHHHHhhC----CCEEEEEecCCCHHHHHHHHHc---C----C-------------------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ----NVTIVSTALNLGAPFNEMIALR---G----L------------------------- 362 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~----g~~V~gvdiDiS~~~l~~a~~r---g----~------------------------- 362 (467)
.+|||+|||+|.++..+++. +..|++ +|+++.+++.++++ . .
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~~~~~v~g--vDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIA--SDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEE--EESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhccCCCeEEE--EECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 48999999999999999876 456777 77788888777632 1 1
Q ss_pred ---cc-------------EEEccCCCCcc-----CCCccceEEeccccccccc------hhhHHHHHHHHHhccCCCcEE
Q 012235 363 ---IP-------------LYVTLNQRLPF-----FDNTMDLIHTTGFMDGWLD------MLLLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 363 ---i~-------------~~~~d~~~Lpf-----~d~sFDlVis~~~L~h~~~------~~~l~~~L~el~RvLKPGG~L 415 (467)
+. +.++|+..... ..++||+|+++..+.+... ......++.++.++|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 45 88888776431 3458999999876643332 234568999999999999999
Q ss_pred EEEe
Q 012235 416 WIDR 419 (467)
Q Consensus 416 iI~~ 419 (467)
++..
T Consensus 211 ~~~~ 214 (250)
T 1o9g_A 211 AVTD 214 (250)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9843
No 179
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.07 E-value=6.8e-10 Score=105.20 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=86.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~s 379 (467)
+...+.+.++. +|||+|||+|.++..+++.+..+++ +|+++.+++.++++ + .+.+..+|.......+++
T Consensus 83 ~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 83 IALKLNLNKEK--RVLEFGTGSGALLAVLSEVAGEVWT--FEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--ECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHhcCCCCCC--EEEEeCCCccHHHHHHHHhCCEEEE--EecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 44445566666 8999999999999999988888888 77788888877653 2 367888887775435678
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
||+|+++.. +. ..++.++.++|||||.+++..+.. +....+.+.++.. |..
T Consensus 159 ~D~v~~~~~-----~~---~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~-f~~ 209 (248)
T 2yvl_A 159 FHAAFVDVR-----EP---WHYLEKVHKSLMEGAPVGFLLPTA--NQVIKLLESIENY-FGN 209 (248)
T ss_dssp BSEEEECSS-----CG---GGGHHHHHHHBCTTCEEEEEESSH--HHHHHHHHHSTTT-EEE
T ss_pred ccEEEECCc-----CH---HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHhh-CCc
Confidence 999998432 22 368999999999999999977533 2223444444444 543
No 180
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.06 E-value=1.2e-10 Score=115.18 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=71.2
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC--------CccEE--EccCCCCccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG--------LIPLY--VTLNQRLPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg--------~i~~~--~~d~~~Lpf~d~sFDl 382 (467)
+.++. +|||+|||+|.++..++++ ..|+|+|++. |...+.++. .+.++ ++|+..+| +++||+
T Consensus 80 ~~~g~--~VLDlGcGtG~~s~~la~~-~~V~gVD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~ 151 (276)
T 2wa2_A 80 VELKG--TVVDLGCGRGSWSYYAASQ-PNVREVKAYT---LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADT 151 (276)
T ss_dssp CCCCE--EEEEESCTTCHHHHHHHTS-TTEEEEEEEC---CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSE
T ss_pred CCCCC--EEEEeccCCCHHHHHHHHc-CCEEEEECch---hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCE
Confidence 44555 8999999999999999998 6899966653 322221111 36678 78888776 789999
Q ss_pred EEeccccccc----cchhhHHHHHHHHHhccCCCc--EEEEEecc
Q 012235 383 IHTTGFMDGW----LDMLLLDFILFDWDRILRPGG--LLWIDRFF 421 (467)
Q Consensus 383 Vis~~~L~h~----~~~~~l~~~L~el~RvLKPGG--~LiI~~~~ 421 (467)
|+|..+ .+. .+......++.++.|+||||| .|++..+.
T Consensus 152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 999876 222 111111137899999999999 99997765
No 181
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.06 E-value=2.3e-10 Score=107.42 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=75.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCCccCCC
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRLPFFDN 378 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~Lpf~d~ 378 (467)
+.++. +|||+|||+|.++..+++. + ..|++ +|+++.+++.++++ ..+.++++|....+..++
T Consensus 75 ~~~~~--~vLDiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 150 (226)
T 1i1n_A 75 LHEGA--KALDVGSGSGILTACFARMVGCTGKVIG--IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEA 150 (226)
T ss_dssp SCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGC
T ss_pred CCCCC--EEEEEcCCcCHHHHHHHHHhCCCcEEEE--EeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCC
Confidence 45555 8999999999999999986 4 57888 67778887777532 247788888876666678
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+||+|++..++.+ ++.++.++|||||.+++....
T Consensus 151 ~fD~i~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 151 PYDAIHVGAAAPV---------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CEEEEEECSBBSS---------CCHHHHHTEEEEEEEEEEESC
T ss_pred CcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEec
Confidence 8999999988743 346789999999999997643
No 182
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.05 E-value=2e-09 Score=108.87 Aligned_cols=131 Identities=18% Similarity=0.079 Sum_probs=93.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC---CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN---VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g---~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d 377 (467)
+..+....++. .|||+|||+|.++..++..+ ..++| +|+++.+++.++++ + .+.+.++|+..++.+.
T Consensus 195 l~~~~~~~~~~--~vLD~gcGsG~~~ie~a~~~~~~~~v~g--~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 195 LLRLADARPGM--RVLDPFTGSGTIALEAASTLGPTSPVYA--GDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHTTCCTTC--CEEESSCTTSHHHHHHHHHHCTTSCEEE--EESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHhCCCCCC--EEEeCCCCcCHHHHHHHHhhCCCceEEE--EECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 34445555555 89999999999999999864 78888 66778888777643 4 4789999999998878
Q ss_pred CccceEEeccccccccc-----hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 378 NTMDLIHTTGFMDGWLD-----MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~-----~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
+.||+|+++........ ......++.++.++|||||.+++.+.. .+.+.+..+ .|++..+-...
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~-----~~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR-----PALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC-----HHHHHHHCC-TTEEEEEEEEC
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC-----HHHHHHHhh-cCcEEEEEEEE
Confidence 88999999866521111 111357899999999999999997642 223334444 77766654433
No 183
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.05 E-value=1.6e-10 Score=108.82 Aligned_cols=136 Identities=14% Similarity=0.204 Sum_probs=87.8
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CCc-cEEEccCCCCccCCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GLI-PLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~i-~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+|||+|||+|.++..++.. +.++++ +|+++.|++.++++ |.- .+...|.... .++++||+|++..++++.
T Consensus 52 ~VLDlGCG~GplAl~l~~~~p~a~~~A--~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHlL 128 (200)
T 3fzg_A 52 SILDFGCGFNPLALYQWNENEKIIYHA--YDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPVL 128 (200)
T ss_dssp EEEEETCTTHHHHHHHHCSSCCCEEEE--ECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHHH
T ss_pred eEEEecCCCCHHHHHHHhcCCCCEEEE--EeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHhh
Confidence 8999999999999999877 567777 78889998888653 332 4555555433 467899999999999555
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEec---ccCCCCHH-HHHHHHHHcCceeeEEEEccC--CCCceEEEEEeec
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRF---FCNKKDLD-DYMYMFLQFRYKKHKWAISPK--SKDEVYLSALLEK 462 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~---~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k--~~devyl~avlqK 462 (467)
++ .+..+.++.+.|||||.|+-... ......++ .|...+++. ...-.|.+... +++-+|+...+||
T Consensus 129 -~~--~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~-~~~~~~~~~~~~~~nEl~y~~~~~~~ 200 (200)
T 3fzg_A 129 -KQ--QDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESF-TKGWIKILDSKVIGNELVYITSGFQK 200 (200)
T ss_dssp -HH--TTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHH-TTTTSCEEEEEEETTEEEEEECCC--
T ss_pred -hh--hHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHh-ccCcceeeeeeeeCceEEEEEecccC
Confidence 44 25778899999999998776441 11111222 444444443 12223444333 3444576655554
No 184
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.04 E-value=1.1e-09 Score=110.75 Aligned_cols=120 Identities=14% Similarity=0.015 Sum_probs=87.0
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCCccC----CCccceEEecc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRLPFF----DNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~Lpf~----d~sFDlVis~~ 387 (467)
+|||+|||+|.++..+++.|..|++ +|+++.+++.++++ + .+.++++|+..+... +++||+|+++.
T Consensus 156 ~VLDlgcGtG~~sl~la~~ga~V~~--VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 156 KVLNLFGYTGVASLVAAAAGAEVTH--VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred cEEEcccccCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 8999999999999999999888888 78888888877653 3 267888887665321 57899999964
Q ss_pred cccc-------ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH----HcCcee
Q 012235 388 FMDG-------WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL----QFRYKK 441 (467)
Q Consensus 388 ~L~h-------~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~----~~Gf~~ 441 (467)
.... +.....+..++.++.++|+|||.|++..........+.+.++++ +.|++.
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 4211 11122356889999999999999887665555445555666665 556644
No 185
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.04 E-value=3.4e-10 Score=105.40 Aligned_cols=105 Identities=15% Similarity=0.058 Sum_probs=77.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-cc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-PF 375 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-pf 375 (467)
+..++...++. +|||+|||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++++|+... +.
T Consensus 48 l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 123 (210)
T 3c3p_A 48 LYLLARIKQPQ--LVVVPGDGLGCASWWFARAISISSRVVM--IDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG 123 (210)
T ss_dssp HHHHHHHHCCS--EEEEESCGGGHHHHHHHTTSCTTCEEEE--EESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT
T ss_pred HHHHHHhhCCC--EEEEEcCCccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc
Confidence 33333333444 8999999999999999987 568888 67778888777643 2 377888887653 54
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.++ ||+|++.... . ....++.++.++|||||.+++.+...
T Consensus 124 ~~~-fD~v~~~~~~---~---~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 124 QRD-IDILFMDCDV---F---NGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp CCS-EEEEEEETTT---S---CHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred CCC-CCEEEEcCCh---h---hhHHHHHHHHHhcCCCeEEEEECccc
Confidence 456 9999987432 1 23679999999999999999976554
No 186
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.03 E-value=3.2e-09 Score=111.44 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=104.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp- 374 (467)
..+..++...++. +|||+|||+|..+..+++. + ..|++ +|+++.+++.+.++ + .+.++++|+..++
T Consensus 249 ~l~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a--~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~ 324 (450)
T 2yxl_A 249 AVASIVLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYA--FDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE 324 (450)
T ss_dssp HHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS
T ss_pred HHHHHhcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEE--EcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch
Confidence 3455667777777 8999999999999999985 3 67888 77888887776543 4 3778888888776
Q ss_pred -cCCCccceEEec------cccccccch------hh-------HHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHH
Q 012235 375 -FFDNTMDLIHTT------GFMDGWLDM------LL-------LDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYM 433 (467)
Q Consensus 375 -f~d~sFDlVis~------~~L~h~~~~------~~-------l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~ 433 (467)
+++++||+|++. .++.+.++. .. ...++.++.++|||||.+++++......+ .+.+...
T Consensus 325 ~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~ 404 (450)
T 2yxl_A 325 IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWF 404 (450)
T ss_dssp SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHH
Confidence 555889999963 222111110 00 14689999999999999999887665443 3355666
Q ss_pred HHHc-CceeeEE-------------EEccC-CCCceEEEEEeecC
Q 012235 434 FLQF-RYKKHKW-------------AISPK-SKDEVYLSALLEKP 463 (467)
Q Consensus 434 i~~~-Gf~~l~W-------------~~~~k-~~devyl~avlqKP 463 (467)
+++. +|....- ...+. ...+.|+.++++|.
T Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 449 (450)
T 2yxl_A 405 LNVHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKS 449 (450)
T ss_dssp HHHCSSCEECCCCSSSEECSSTTCEEECHHHHSSCCEEEEEEECC
T ss_pred HHhCCCCEEeecccccccccCCCeEEECCCCCCCCceEEEEEEEC
Confidence 6665 5654321 11111 23356778888873
No 187
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.03 E-value=8.5e-10 Score=105.69 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=80.4
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC---ccC---CCccceE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL---PFF---DNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L---pf~---d~sFDlV 383 (467)
.+|||+|||+|.++..++++ +..|++ +|+++.|++.++++ + .+.++++|+... +++ +++||+|
T Consensus 67 ~~vLDlG~G~G~~~~~la~~~~~~~v~g--vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 67 RRGIDIGTGASCIYPLLGATLNGWYFLA--TEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCCEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CEEEEeCCChhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 38999999999999988876 678888 77788888877643 2 278889887652 344 2689999
Q ss_pred Eeccccccccch------------hhHHHHHHHHHhccCCCcEEEEEe------------------cccCCCCHHHHHHH
Q 012235 384 HTTGFMDGWLDM------------LLLDFILFDWDRILRPGGLLWIDR------------------FFCNKKDLDDYMYM 433 (467)
Q Consensus 384 is~~~L~h~~~~------------~~l~~~L~el~RvLKPGG~LiI~~------------------~~~~~~~~~~~~~~ 433 (467)
+++..+.+.... .....++.++.|+|||||.+.+.. ........+.+.++
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 224 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE 224 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence 998665322200 001134455666666665443321 01112233578889
Q ss_pred HHHcCceeeEEEEccC
Q 012235 434 FLQFRYKKHKWAISPK 449 (467)
Q Consensus 434 i~~~Gf~~l~W~~~~k 449 (467)
+++.||..+.......
T Consensus 225 l~~~Gf~~v~~~~~~~ 240 (254)
T 2h00_A 225 LRIQGVPKVTYTEFCQ 240 (254)
T ss_dssp HHHTTCSEEEEEEEEE
T ss_pred HHHcCCCceEEEEEec
Confidence 9999998887654443
No 188
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.02 E-value=3.5e-10 Score=106.28 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=75.7
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCC-------EEEEEecCCCHHHHHHHHHc----C-------CccEEEccCCCC
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNV-------TIVSTALNLGAPFNEMIALR----G-------LIPLYVTLNQRL 373 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~-------~V~gvdiDiS~~~l~~a~~r----g-------~i~~~~~d~~~L 373 (467)
.+.++. +|||||||+|.++..+++... .|++ +|+++.+++.+.++ + .+.++.+|....
T Consensus 77 ~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 77 VLKPGS--RAIDVGSGSGYLTVCMAIKMNVLENKNSYVIG--LERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp TSCTTC--EEEEESCTTSHHHHHHHHHTTTTTCTTCEEEE--EESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred hCCCCC--EEEEECCCCCHHHHHHHHHhcccCCCCCEEEE--EeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence 355665 899999999999999998743 8888 67778887777543 2 478888988776
Q ss_pred c----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 374 P----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 374 p----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
. ..+++||+|++..++.+ ++.++.++|||||.+++...
T Consensus 153 ~~~~~~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 153 NEEEKKELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CHHHHHHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEE
T ss_pred ccccCccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEc
Confidence 5 55688999999988843 34678999999999999654
No 189
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.02 E-value=3.1e-09 Score=110.72 Aligned_cols=154 Identities=15% Similarity=0.035 Sum_probs=101.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc--cC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP--FF 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp--f~ 376 (467)
.+..++...++. +|||+|||+|..+..+++.+ ..|++ +|+++.+++.+.++ +. +.++++|+..++ ++
T Consensus 237 ~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a--~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~ 312 (429)
T 1sqg_A 237 GCMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVA--VDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCG 312 (429)
T ss_dssp THHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEE--EESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHT
T ss_pred HHHHHcCCCCcC--eEEEECCCchHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcc
Confidence 455667777776 89999999999999999874 57888 55555555555432 43 678888988876 55
Q ss_pred CCccceEEecc------ccccccc------hhh-------HHHHHHHHHhccCCCcEEEEEecccCCC-CHHHHHHHHHH
Q 012235 377 DNTMDLIHTTG------FMDGWLD------MLL-------LDFILFDWDRILRPGGLLWIDRFFCNKK-DLDDYMYMFLQ 436 (467)
Q Consensus 377 d~sFDlVis~~------~L~h~~~------~~~-------l~~~L~el~RvLKPGG~LiI~~~~~~~~-~~~~~~~~i~~ 436 (467)
+++||+|++.. ++.+.++ ... ...++.++.++|||||.+++++.....+ +.+.+...+++
T Consensus 313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~ 392 (429)
T 1sqg_A 313 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392 (429)
T ss_dssp TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence 68999999732 2211111 000 1478999999999999999988766443 33355566665
Q ss_pred c-CceeeE--------EEEccC-CCCceEEEEEeecC
Q 012235 437 F-RYKKHK--------WAISPK-SKDEVYLSALLEKP 463 (467)
Q Consensus 437 ~-Gf~~l~--------W~~~~k-~~devyl~avlqKP 463 (467)
. +|..+. +..-+. ...+.|+.|+++|.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 429 (429)
T 1sqg_A 393 TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK 429 (429)
T ss_dssp CTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC-
T ss_pred CCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEEEEC
Confidence 4 454432 222232 23356888889884
No 190
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.02 E-value=6.1e-10 Score=105.79 Aligned_cols=101 Identities=22% Similarity=0.158 Sum_probs=76.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCC-
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDN- 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~- 378 (467)
+.+.+.+.++. +|||+|||+|.++..+++.+ ..|++ +|+++.+++.++++ + .+.+..+|. ..+++++
T Consensus 83 ~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~ 157 (235)
T 1jg1_A 83 MLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYT--IERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKA 157 (235)
T ss_dssp HHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEE--EESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGC
T ss_pred HHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHhCCEEEE--EeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCC
Confidence 44555666666 89999999999999999885 78888 67778888777653 2 367888886 4455444
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
.||+|++..++.++. .++.++|||||.+++....
T Consensus 158 ~fD~Ii~~~~~~~~~---------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIP---------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred CccEEEECCcHHHHH---------HHHHHhcCCCcEEEEEEec
Confidence 499999999885433 3678999999999996643
No 191
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.01 E-value=1.6e-09 Score=108.61 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=75.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHHc-----------------CCccEE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIALR-----------------GLIPLY 366 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~r-----------------g~i~~~ 366 (467)
+...+.+.++. +|||+|||+|.++..+++. | ..|++ +|+++.+++.+.++ ..+.++
T Consensus 97 ~l~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 97 ILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVIS--FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEE--EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCceEEE--EeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 44556677776 8999999999999999987 5 67888 67778887777542 247888
Q ss_pred EccCCCC--ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 367 VTLNQRL--PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 367 ~~d~~~L--pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++|+..+ ++++++||+|+++..- + ..++.++.++|||||.+++...
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~~-----~---~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDMLN-----P---HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ESCTTCCC-------EEEEEECSSS-----T---TTTHHHHGGGEEEEEEEEEEES
T ss_pred ECChHHcccccCCCCeeEEEECCCC-----H---HHHHHHHHHhcCCCcEEEEEeC
Confidence 9998876 4667789999986532 2 2478999999999999998654
No 192
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.01 E-value=2.1e-10 Score=118.99 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=72.7
Q ss_pred ceEEEECCC------ccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC------CCccceE
Q 012235 319 RIGLDFGVG------TGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF------DNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCG------tG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~------d~sFDlV 383 (467)
.+||||||| +|..+..++++ +..|+++| +++.|. .....+.++++|+.++|+. +++||+|
T Consensus 218 ~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVD--iSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 218 VRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLD--IMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp CEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEE--SSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEE--CCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 489999999 77777777654 67899955 455552 2334589999999999887 7899999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
++..+. ++.+ ...+|.++.|+|||||+|++.++.
T Consensus 293 isdgsH-~~~d---~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 293 IDDGSH-INAH---VRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EECSCC-CHHH---HHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EECCcc-cchh---HHHHHHHHHHhcCCCeEEEEEecc
Confidence 997542 4432 468999999999999999998765
No 193
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.01 E-value=4.1e-09 Score=99.04 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C--CEEEEEecCCCHHHHHHHHH----cCCccEEEccCCCCc---cCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N--VTIVSTALNLGAPFNEMIAL----RGLIPLYVTLNQRLP---FFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g--~~V~gvdiDiS~~~l~~a~~----rg~i~~~~~d~~~Lp---f~d~sFDl 382 (467)
+.++. +|||+|||+|.++..+++. + ..|++ +|+++.+++.+.+ ...+.++++|+.... ..+++||+
T Consensus 71 ~~~~~--~vLDlG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 71 IKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFG--IEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEE--EESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCC--EEEEEeccCCHHHHHHHHHhCCCeEEEE--EECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceE
Confidence 44455 8999999999999999976 3 67888 6778877766543 234788899887632 22468999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|++.... ......++.++.++|||||.+++.
T Consensus 147 v~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 147 IFEDVAQ-----PTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEECCCS-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCC-----HhHHHHHHHHHHHhcCCCCEEEEE
Confidence 9987652 111235599999999999999997
No 194
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.01 E-value=9.7e-10 Score=115.24 Aligned_cols=109 Identities=11% Similarity=0.044 Sum_probs=77.5
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHH-------HH----cC----CccEEEccC
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMI-------AL----RG----LIPLYVTLN 370 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a-------~~----rg----~i~~~~~d~ 370 (467)
.+.+.+.++. +|||+|||+|.++..+++. + ..|+| +|+++.+++.| ++ .+ .+.+++++.
T Consensus 235 l~~l~l~~g~--~VLDLGCGsG~la~~LA~~~g~~~V~G--VDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 235 YQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFG--CEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEE--EECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHhcCCCCCC--EEEEeCCCcCHHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3445566666 8999999999999999986 4 46888 66667665555 33 23 366777654
Q ss_pred CCC--cc--CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 371 QRL--PF--FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 371 ~~L--pf--~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
... ++ ..++||+|+++.++ +.. . +...+.++.++|||||.+++.+.+.+.
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l-~~~-d--~~~~L~el~r~LKpGG~lVi~d~f~p~ 364 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFL-FDE-D--LNKKVEKILQTAKVGCKIISLKSLRSL 364 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTT-CCH-H--HHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred cccccccccccCCCCEEEEeCcc-ccc-c--HHHHHHHHHHhCCCCeEEEEeeccCCc
Confidence 322 22 35789999998666 322 2 467899999999999999997655543
No 195
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.00 E-value=3e-10 Score=113.74 Aligned_cols=125 Identities=12% Similarity=-0.016 Sum_probs=79.4
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecC-C-CHHHHHHHH--Hc--CCccEEEc-cCCCCccCCCccceEEe
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALN-L-GAPFNEMIA--LR--GLIPLYVT-LNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiD-i-S~~~l~~a~--~r--g~i~~~~~-d~~~Lpf~d~sFDlVis 385 (467)
+.++. +|||+|||+|.++..++++ ..|+++|+. + +..+++.+. .. ..+.++++ |+..++ +++||+|+|
T Consensus 80 ~~~g~--~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~s 154 (305)
T 2p41_A 80 VTPEG--KVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLC 154 (305)
T ss_dssp SCCCE--EEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCCC--EEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEE
Confidence 34555 8999999999999999998 578897661 0 121111111 11 23677788 777665 578999999
Q ss_pred ccccc--cc-cchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 386 TGFMD--GW-LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 386 ~~~L~--h~-~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
..++. ++ .+......++.++.++|||||.|++..+.........+...+... |..+.
T Consensus 155 d~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~-f~~v~ 214 (305)
T 2p41_A 155 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK-HGGAL 214 (305)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH-HCCEE
T ss_pred CCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHH-cCCEE
Confidence 87652 22 222111257899999999999999866544333333555555544 44443
No 196
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.99 E-value=2.9e-09 Score=109.02 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=98.2
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d 377 (467)
+..+. ..++. +|||+|||+|.++..++..+. .++| +|+++.+++.++++ + .+.+.++|+..+++++
T Consensus 210 l~~~~-~~~~~--~vLD~gCGsG~~~i~~a~~~~~~~v~g--~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~ 284 (373)
T 3tm4_A 210 MIELA-ELDGG--SVLDPMCGSGTILIELALRRYSGEIIG--IEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV 284 (373)
T ss_dssp HHHHH-TCCSC--CEEETTCTTCHHHHHHHHTTCCSCEEE--EESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred HHHhh-cCCCC--EEEEccCcCcHHHHHHHHhCCCCeEEE--EeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence 33444 55555 899999999999999999876 7888 77778888877653 3 3789999999999888
Q ss_pred CccceEEeccccccccc-----hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCC
Q 012235 378 NTMDLIHTTGFMDGWLD-----MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKD 452 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~-----~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~d 452 (467)
++||+|+++..+..... ......++.++.|+| ||.+++... +.+.+.+.+.+.||+..+-.....+.
T Consensus 285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-----~~~~~~~~~~~~G~~~~~~~~~~nG~- 356 (373)
T 3tm4_A 285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-----EKKAIEEAIAENGFEIIHHRVIGHGG- 356 (373)
T ss_dssp SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-----CHHHHHHHHHHTTEEEEEEEEEEETT-
T ss_pred CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-----CHHHHHHHHHHcCCEEEEEEEEEcCC-
Confidence 99999999876522110 111357889999999 444444332 34467778889998876544333221
Q ss_pred ceEEEEEeecCC
Q 012235 453 EVYLSALLEKPP 464 (467)
Q Consensus 453 evyl~avlqKP~ 464 (467)
.-..++|+|.
T Consensus 357 --l~~~~~~~~~ 366 (373)
T 3tm4_A 357 --LMVHLYVVKL 366 (373)
T ss_dssp --EEEEEEEEEE
T ss_pred --EEEEEEeccC
Confidence 2244566653
No 197
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.98 E-value=3.1e-09 Score=105.91 Aligned_cols=131 Identities=17% Similarity=0.083 Sum_probs=89.6
Q ss_pred cCCCCCCceEEEECC------CccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccE-EEccCCCCccCCCccc
Q 012235 312 AIKPGETRIGLDFGV------GTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPL-YVTLNQRLPFFDNTMD 381 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC------GtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~-~~~d~~~Lpf~d~sFD 381 (467)
.+.++. +|||+|| |+|. ..+++. +..|+++|++. . + ..+.+ +++|+..+++. ++||
T Consensus 60 ~l~~g~--~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~--~-v------~~v~~~i~gD~~~~~~~-~~fD 125 (290)
T 2xyq_A 60 AVPYNM--RVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLND--F-V------SDADSTLIGDCATVHTA-NKWD 125 (290)
T ss_dssp CCCTTC--EEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSC--C-B------CSSSEEEESCGGGCCCS-SCEE
T ss_pred CCCCCC--EEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCC--C-C------CCCEEEEECccccCCcc-Cccc
Confidence 455665 8999999 4476 333332 46899966554 3 1 24789 99999888764 7899
Q ss_pred eEEecccccccc---------chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCC
Q 012235 382 LIHTTGFMDGWL---------DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKD 452 (467)
Q Consensus 382 lVis~~~L~h~~---------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~d 452 (467)
+|+++... ++. .....+.++.++.|+|||||.|++..+.... .+.+.+.+++.||..+..........
T Consensus 126 ~Vvsn~~~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~--~~~l~~~l~~~GF~~v~~~asr~~s~ 202 (290)
T 2xyq_A 126 LIISDMYD-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--NADLYKLMGHFSWWTAFVTNVNASSS 202 (290)
T ss_dssp EEEECCCC-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--CHHHHHHHTTEEEEEEEEEGGGTTSS
T ss_pred EEEEcCCc-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC--HHHHHHHHHHcCCcEEEEEEcCCCch
Confidence 99997543 211 1122457899999999999999997765432 34778888888998877663444445
Q ss_pred ceEEEEE
Q 012235 453 EVYLSAL 459 (467)
Q Consensus 453 evyl~av 459 (467)
+.|+.+.
T Consensus 203 e~~lv~~ 209 (290)
T 2xyq_A 203 EAFLIGA 209 (290)
T ss_dssp CEEEEEE
T ss_pred heEEecC
Confidence 6666543
No 198
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.98 E-value=1.6e-08 Score=97.58 Aligned_cols=140 Identities=14% Similarity=0.020 Sum_probs=97.8
Q ss_pred HHHHHhcC-CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCC
Q 012235 306 LISDILAI-KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d 377 (467)
.+..+... .++. +|||||||+|.++..+++.+.....+++|+++.+++.|+++ + .+.+..+|......++
T Consensus 11 RL~~i~~~v~~g~--~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~ 88 (230)
T 3lec_A 11 RLQKVANYVPKGA--RLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEA 88 (230)
T ss_dssp HHHHHHTTSCTTE--EEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG
T ss_pred HHHHHHHhCCCCC--EEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccc
Confidence 34444443 3454 89999999999999999987543333477778888777643 3 3788999977765544
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLS 457 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~ 457 (467)
+.||+|+.....- ..+..++.+..+.|+++|+|++... ...+.+.+.+...||....=..... ++.+|-.
T Consensus 89 ~~~D~IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp~----~~~~~lr~~L~~~Gf~i~~E~lv~e-~~~~Yei 158 (230)
T 3lec_A 89 DNIDTITICGMGG-----RLIADILNNDIDKLQHVKTLVLQPN----NREDDLRKWLAANDFEIVAEDILTE-NDKRYEI 158 (230)
T ss_dssp GCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEES----SCHHHHHHHHHHTTEEEEEEEEEEC---CEEEE
T ss_pred cccCEEEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEECC----CChHHHHHHHHHCCCEEEEEEEEEE-CCEEEEE
Confidence 5799988655431 1245788999999999999998663 3456889999999998876554433 2344443
No 199
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.98 E-value=9.4e-10 Score=105.44 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=72.8
Q ss_pred eEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc------------C--CccEEEccCCC-Cc--cCCCcc
Q 012235 320 IGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR------------G--LIPLYVTLNQR-LP--FFDNTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r------------g--~i~~~~~d~~~-Lp--f~d~sF 380 (467)
+|||||||+|.++..+++.+ ..++| +|+++.+++.+.++ + .+.++.+|+.. ++ +.++++
T Consensus 52 ~vLDiGcG~G~~~~~la~~~~~~~v~g--vD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 52 TIADIGCGFGGLMIDLSPAFPEDLILG--MEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp EEEEETCTTSHHHHHHHHHSTTSEEEE--EESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred EEEEEcCCCCHHHHHHHHhCCCCCEEE--EEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 89999999999999999875 46888 77888888766432 3 37788999876 66 678899
Q ss_pred ceEEeccccccccchh------hHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDML------LLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~------~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|.|+..+.- .|.... ....++.++.++|+|||.|++.+
T Consensus 130 d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 130 SKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 999865433 221100 01379999999999999999954
No 200
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.98 E-value=3.7e-10 Score=121.94 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=81.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHH----cCC--ccEEEccCCCC--ccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIAL----RGL--IPLYVTLNQRL--PFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~----rg~--i~~~~~d~~~L--pf~d~sFDlVis~~~L~h 391 (467)
+|||||||.|.++..|+++|.+|+| +|.++.+++.|+. .+. +.+.+++++++ ++.+++||+|+|..+++|
T Consensus 69 ~vLDvGCG~G~~~~~la~~ga~V~g--iD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~eh 146 (569)
T 4azs_A 69 NVLDLGCAQGFFSLSLASKGATIVG--IDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHH 146 (569)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred eEEEECCCCcHHHHHHHhCCCEEEE--ECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhc
Confidence 7999999999999999999999999 7888988887753 342 78999999887 466889999999999999
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
..++... ..+..+.+.|+++|..++..+..
T Consensus 147 v~~~~~~-~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 147 IVHLHGI-DEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHCH-HHHHHHHHHHHHHSSEEEEECCC
T ss_pred CCCHHHH-HHHHHHHHHhccccceeeEEecc
Confidence 8876433 33456778888888877766544
No 201
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=98.97 E-value=1.2e-09 Score=108.25 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=76.8
Q ss_pred CCceEEEECCCc--cHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCCc------cCCCc
Q 012235 317 ETRIGLDFGVGT--GTFAARMREQ---NVTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 317 ~~r~VLDIGCGt--G~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~Lp------f~d~s 379 (467)
.++.+||||||+ +.....++++ +..|++ +|.|+.|++.++.+ +.+.++++|+.+++ ...++
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~--VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~ 155 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVY--VDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT 155 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEE--EECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEE--EeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc
Confidence 356899999997 3344444432 678888 78889999888753 13789999988763 11355
Q ss_pred cc-----eEEeccccccccch-hhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 380 MD-----LIHTTGFMDGWLDM-LLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 380 FD-----lVis~~~L~h~~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
|| .|+++.+| ||.++ .....++.++.++|+|||+|+++++...
T Consensus 156 ~D~~~p~av~~~avL-H~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 156 LDLTRPVALTVIAIV-HFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp CCTTSCCEEEEESCG-GGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCcCCcchHHhhhhH-hcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 66 58889999 55544 3356899999999999999999887654
No 202
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.97 E-value=1e-08 Score=102.07 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=80.0
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCC-ccCCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRL-PFFDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~L-pf~d~sFDlVi 384 (467)
++|||||||+|.++..+++. ...|++ +|+++.+++.+++. ..+.++++|+..+ ...+++||+|+
T Consensus 85 ~~VLdiG~G~G~~~~~l~~~~~~~~V~~--VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvIi 162 (294)
T 3adn_A 85 KHVLIIGGGDGAMLREVTRHKNVESITM--VEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CEEEEESCTTCHHHHHHHTCTTCCEEEE--ECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEEE
T ss_pred CEEEEEeCChhHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEEE
Confidence 48999999999999999987 356888 66677788777642 2478999997664 34568999999
Q ss_pred eccccccccchhhH--HHHHHHHHhccCCCcEEEEEec--ccCCCCHHHHHHHHHHcCceee
Q 012235 385 TTGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRF--FCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 385 s~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~--~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
+.... ++.....+ ..+++++.++|||||.+++... ....+....+.+.++.. |..+
T Consensus 163 ~D~~~-p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~s~~~~~~~~~~~~~~l~~~-F~~v 222 (294)
T 3adn_A 163 SDCTD-PIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDV 222 (294)
T ss_dssp ECC-----------CCHHHHHHHHHTEEEEEEEEEEEEECSSCCHHHHHHHHHHHHH-CSEE
T ss_pred ECCCC-ccCcchhccHHHHHHHHHHhcCCCCEEEEecCCcccchHHHHHHHHHHHHH-CCCe
Confidence 97654 33332222 5799999999999999998652 22222233555556555 5443
No 203
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.97 E-value=9.1e-10 Score=116.80 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=73.6
Q ss_pred eEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
+|||||||+|.++..+++.+ ..|++ +|+++ +++.+++ .+ .+.++.+|+..++++ ++||+|+++..++|
T Consensus 161 ~VLDiGcGtG~la~~la~~~~~~V~g--vD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~ 236 (480)
T 3b3j_A 161 IVLDVGCGSGILSFFAAQAGARKIYA--VEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYM 236 (480)
T ss_dssp EEEEESCSTTHHHHHHHHTTCSEEEE--EECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHH
T ss_pred EEEEecCcccHHHHHHHHcCCCEEEE--EEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHh
Confidence 89999999999999999885 48999 45555 6665543 23 478999999887764 68999999888766
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+.... ....+.++.++|||||.+++
T Consensus 237 ~~~e~-~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 237 LFNER-MLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HTCHH-HHHHHHHGGGGEEEEEEEES
T ss_pred cCcHH-HHHHHHHHHHhcCCCCEEEE
Confidence 66543 45677789999999999985
No 204
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.96 E-value=1.8e-08 Score=98.11 Aligned_cols=131 Identities=14% Similarity=-0.025 Sum_probs=93.8
Q ss_pred HHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCC
Q 012235 306 LISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFD 377 (467)
Q Consensus 306 ~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d 377 (467)
.+..+.. +.++. +|||||||+|.++..+++.+.....+++|+++.+++.|.++ + .+.+..+|......++
T Consensus 11 RL~~i~~~v~~g~--~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~ 88 (244)
T 3gnl_A 11 RLEKVASYITKNE--RIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK 88 (244)
T ss_dssp HHHHHHTTCCSSE--EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG
T ss_pred HHHHHHHhCCCCC--EEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc
Confidence 3444444 33454 89999999999999999987543333477778888777653 3 3788899877655444
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS 447 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~ 447 (467)
..||+|+.....- ..+..++.+..+.|+++|+|++... ...+.+.+.+...||..+.=...
T Consensus 89 ~~~D~IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq~~----~~~~~lr~~L~~~Gf~i~~E~lv 149 (244)
T 3gnl_A 89 DAIDTIVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQPN----IAAWQLREWSEQNNWLITSEAIL 149 (244)
T ss_dssp GCCCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEES----SCHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccEEEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEEcC----CChHHHHHHHHHCCCEEEEEEEE
Confidence 4699988754431 1245789999999999999999653 34568889999999987654443
No 205
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.96 E-value=6.3e-10 Score=105.87 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=74.0
Q ss_pred eEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCC-c-cCCCccceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRL-P-FFDNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~L-p-f~d~sFDlVis~ 386 (467)
+|||||||+|..+..|++. +..|++ +|+++.+++.++++ + .+.++++|+..+ + +.+++||+|++.
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTC--IDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEE--ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 8999999999999999874 578888 77888888777542 2 377888886554 2 336899999987
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.... ....++.++.++|||||.+++.+..+
T Consensus 137 ~~~~------~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSPM------DLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCTT------THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcHH------HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 6542 13568999999999999999976654
No 206
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=98.96 E-value=2.6e-10 Score=109.87 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHH----HHHHHcC---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFN----EMIALRG---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l----~~a~~rg---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +..|+++|++ +.++ +.+...+ .+.++++|+... +
T Consensus 51 ~l~~l~~~~~~~--~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 126 (242)
T 3r3h_A 51 FMQMLIRLTRAK--KVLELGTFTGYSALAMSLALPDDGQVITCDIN--EGWTKHAHPYWREAKQEHKIKLRLGPALDTLH 126 (242)
T ss_dssp HHHHHHHHHTCS--EEEEEESCCSHHHHHHHHTSCTTCEEEEEECC--CSSCCCSHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHhhcCcC--EEEEeeCCcCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444444444 8999999999999999984 6789996554 4333 3333333 478999987654 2
Q ss_pred cC-----CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 375 FF-----DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 375 f~-----d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.. +++||+|++.... .....++.++.++|||||.+++.+..+.
T Consensus 127 ~~~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 127 SLLNEGGEHQFDFIFIDADK------TNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp HHHHHHCSSCEEEEEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred HHhhccCCCCEeEEEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 22 5899999987653 1235789999999999999999877653
No 207
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.95 E-value=3.6e-09 Score=111.64 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=94.2
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCc-
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLP- 374 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lp- 374 (467)
..+..++...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ +. +.++++|+..++
T Consensus 95 ~l~~~~L~~~~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~A--vDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~ 170 (456)
T 3m4x_A 95 MIVGTAAAAKPGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVT--NEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP 170 (456)
T ss_dssp HHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEE--ECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred HHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHcCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh
Confidence 4556677777777 9999999999999999876 357888 77778777766542 43 667778877765
Q ss_pred cCCCccceEEeccc------ccc-------ccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHHH
Q 012235 375 FFDNTMDLIHTTGF------MDG-------WLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYMF 434 (467)
Q Consensus 375 f~d~sFDlVis~~~------L~h-------~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~i 434 (467)
..+++||+|++... +.+ |... .....++.++.++|||||.|++++.....++ .+.+..++
T Consensus 171 ~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l 250 (456)
T 3m4x_A 171 HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLV 250 (456)
T ss_dssp HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHH
Confidence 34689999998532 111 1110 0113789999999999999999887665444 43666777
Q ss_pred HHcCceee
Q 012235 435 LQFRYKKH 442 (467)
Q Consensus 435 ~~~Gf~~l 442 (467)
++.+|+.+
T Consensus 251 ~~~~~~l~ 258 (456)
T 3m4x_A 251 ENYPVTIE 258 (456)
T ss_dssp HHSSEEEE
T ss_pred HhCCCEEE
Confidence 77776443
No 208
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.95 E-value=4.3e-09 Score=96.98 Aligned_cols=107 Identities=11% Similarity=-0.034 Sum_probs=78.0
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|||+|||+|.++..+++.+. .|++ +|+++.+++.++++- .+.++++|+..++ ++||+|+++..++++... .
T Consensus 54 ~vlD~gcG~G~~~~~l~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~-~ 127 (200)
T 1ne2_A 54 SVIDAGTGNGILACGSYLLGAESVTA--FDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKH-S 127 (200)
T ss_dssp EEEEETCTTCHHHHHHHHTTBSEEEE--EESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC--------
T ss_pred EEEEEeCCccHHHHHHHHcCCCEEEE--EECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCc-h
Confidence 899999999999999998865 5888 777889999888764 4889999988875 789999999998555432 2
Q ss_pred HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC
Q 012235 398 LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR 438 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G 438 (467)
...++.++.++| |+.+++... ...+.+.+.+...|
T Consensus 128 ~~~~l~~~~~~~--g~~~~~~~~----~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 128 DRAFIDKAFETS--MWIYSIGNA----KARDFLRREFSARG 162 (200)
T ss_dssp CHHHHHHHHHHE--EEEEEEEEG----GGHHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc--CcEEEEEcC----chHHHHHHHHHHCC
Confidence 247899999998 554443322 23445666677766
No 209
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.94 E-value=1.8e-09 Score=101.75 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=73.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-C-------CEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCC
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-N-------VTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRL 373 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g-------~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~L 373 (467)
+.++. +|||+|||+|.++..+++. + ..|++ +|+++.+++.++++ ..+.++.+|...
T Consensus 82 ~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~- 156 (227)
T 1r18_A 82 LKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVG--IEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK- 156 (227)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEE--EESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-
T ss_pred CCCCC--EEEEECCCccHHHHHHHHhcccccCCccCEEEE--EEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-
Confidence 55555 8999999999999999885 4 47888 67778887776542 347788888776
Q ss_pred ccCC-CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 374 PFFD-NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 374 pf~d-~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
++++ ++||+|++..++.++ ..++.++|||||.+++...
T Consensus 157 ~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 157 GYPPNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CCGGGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred CCCcCCCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEe
Confidence 4444 789999999988433 3678999999999999654
No 210
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.94 E-value=1.9e-09 Score=105.67 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=78.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
+.++. +|||+|||+|.++..+++.+. .|++ +|+++.+++.++++ + .+.++.+|+..++. +++||+|+
T Consensus 117 ~~~~~--~VLDlgcG~G~~s~~la~~~~~~~V~~--vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi 191 (272)
T 3a27_A 117 SNENE--VVVDMFAGIGYFTIPLAKYSKPKLVYA--IEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVI 191 (272)
T ss_dssp CCTTC--EEEETTCTTTTTHHHHHHHTCCSEEEE--EECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEE
T ss_pred cCCCC--EEEEecCcCCHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEE
Confidence 55555 899999999999999998843 8888 77788888777642 3 36788999888744 67899999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
+.... . ...++.++.++|+|||.+++..+....
T Consensus 192 ~d~p~----~---~~~~l~~~~~~LkpgG~l~~s~~~~~~ 224 (272)
T 3a27_A 192 MGYVH----K---THKFLDKTFEFLKDRGVIHYHETVAEK 224 (272)
T ss_dssp ECCCS----S---GGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred ECCcc----c---HHHHHHHHHHHcCCCCEEEEEEcCccc
Confidence 98764 1 246899999999999999987765533
No 211
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.94 E-value=4.7e-09 Score=110.94 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=92.9
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc-c
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP-F 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp-f 375 (467)
..+..++...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ +. +.++++|+..++ +
T Consensus 91 ~l~a~~L~~~~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~A--vDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~ 166 (464)
T 3m6w_A 91 QAVGVLLDPKPGE--RVLDLAAAPGGKTTHLAARMGGKGLLLA--NEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEA 166 (464)
T ss_dssp HHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHH
T ss_pred HHHHHhcCcCCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhh
Confidence 4455677777777 9999999999999999976 257877 77888888777543 33 677788877776 3
Q ss_pred CCCccceEEeccc------cc-------cccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHHHH
Q 012235 376 FDNTMDLIHTTGF------MD-------GWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYMFL 435 (467)
Q Consensus 376 ~d~sFDlVis~~~------L~-------h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~i~ 435 (467)
.+++||+|++... +. +|... .....++.++.++|||||.|++++.....++ .+.+..+++
T Consensus 167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~ 246 (464)
T 3m6w_A 167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLK 246 (464)
T ss_dssp HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHH
Confidence 5789999996321 11 11110 0125789999999999999999887665443 335556666
Q ss_pred Hc-Ccee
Q 012235 436 QF-RYKK 441 (467)
Q Consensus 436 ~~-Gf~~ 441 (467)
+. +|+.
T Consensus 247 ~~~~~~l 253 (464)
T 3m6w_A 247 AHPEFRL 253 (464)
T ss_dssp HCTTEEE
T ss_pred HCCCcEE
Confidence 65 4543
No 212
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.94 E-value=1.1e-09 Score=105.82 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=78.4
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +..+++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 70 ll~~l~~~~~~~--~VLeiG~G~G~~~~~la~~~~~~~~v~~--iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 145 (247)
T 1sui_A 70 FLSMLLKLINAK--NTMEIGVYTGYSLLATALAIPEDGKILA--MDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD 145 (247)
T ss_dssp HHHHHHHHTTCC--EEEEECCGGGHHHHHHHHHSCTTCEEEE--EESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHhhCcC--EEEEeCCCcCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH
Confidence 344444544444 8999999999999999886 678888 66667777766542 3 367888887553 3
Q ss_pred c------CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 F------FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 f------~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
. .+++||+|++..... ....++.++.++|||||.+++.+..+
T Consensus 146 ~l~~~~~~~~~fD~V~~d~~~~------~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 146 EMIKDEKNHGSYDFIFVDADKD------NYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp HHHHSGGGTTCBSEEEECSCST------THHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred HHHhccCCCCCEEEEEEcCchH------HHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 2 267899999875431 24678999999999999999976544
No 213
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.93 E-value=1.2e-09 Score=104.00 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=79.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +..|++ +|+++.+++.++++ + .+.++.+|.... +
T Consensus 51 ~l~~l~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 51 FLNILTKISGAK--RIIEIGTFTGYSSLCFASALPEDGKILC--CDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQ 126 (239)
T ss_dssp HHHHHHHHHTCS--EEEEECCTTCHHHHHHHHHSCTTCEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHhhCcC--EEEEEeCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHH
Confidence 344555555555 8999999999999999987 578888 66778887777653 3 267888876442 2
Q ss_pred --------------cCC--CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 --------------FFD--NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 --------------f~d--~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
|++ ++||+|++..... ....++.++.++|||||.+++.+...
T Consensus 127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADKE------NYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp HHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG------GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHhhcccccccccccCCCCCcCEEEEeCCHH------HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 222 7899999886542 13578999999999999999987544
No 214
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.93 E-value=3.2e-08 Score=95.09 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=94.4
Q ss_pred HHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCC-CCccCC
Q 012235 307 ISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQ-RLPFFD 377 (467)
Q Consensus 307 I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~-~Lpf~d 377 (467)
+..+.. +.++. +|||||||+|.++..+++.+.....+++|+++.+++.+.++ + .+.+..+|.. .++. .
T Consensus 6 L~~l~~~v~~g~--~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~ 82 (225)
T 3kr9_A 6 LELVASFVSQGA--ILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-T 82 (225)
T ss_dssp HHHHHTTSCTTE--EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-G
T ss_pred HHHHHHhCCCCC--EEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-C
Confidence 334444 33454 89999999999999999987543333477778887777543 3 3778888864 3432 2
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccCCCCceEEE
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPKSKDEVYLS 457 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k~~devyl~ 457 (467)
..||+|+....- ...+..++.+..+.|+|+|+|++... .....+.+.+...||..+.=..... ++.+|-.
T Consensus 83 ~~~D~IviaG~G-----g~~i~~Il~~~~~~L~~~~~lVlq~~----~~~~~vr~~L~~~Gf~i~~e~lv~e-~~~~Yei 152 (225)
T 3kr9_A 83 DQVSVITIAGMG-----GRLIARILEEGLGKLANVERLILQPN----NREDDLRIWLQDHGFQIVAESILEE-AGKFYEI 152 (225)
T ss_dssp GCCCEEEEEEEC-----HHHHHHHHHHTGGGCTTCCEEEEEES----SCHHHHHHHHHHTTEEEEEEEEEEE-TTEEEEE
T ss_pred cCCCEEEEcCCC-----hHHHHHHHHHHHHHhCCCCEEEEECC----CCHHHHHHHHHHCCCEEEEEEEEEE-CCEEEEE
Confidence 269998875543 11145789999999999999998553 3556888899999998776544332 2344443
Q ss_pred E
Q 012235 458 A 458 (467)
Q Consensus 458 a 458 (467)
.
T Consensus 153 i 153 (225)
T 3kr9_A 153 L 153 (225)
T ss_dssp E
T ss_pred E
Confidence 3
No 215
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.93 E-value=1.6e-09 Score=107.04 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=75.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-------CCccEEEccCCCCccCCCc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR-------GLIPLYVTLNQRLPFFDNT 379 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-------g~i~~~~~d~~~Lpf~d~s 379 (467)
+.+.+.+.++. +|||||||+|.++..+++++..|++ +|+++.+++.+.++ ..+.++++|+..++++ +
T Consensus 20 i~~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~ 93 (285)
T 1zq9_A 20 IIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVA--CELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--F 93 (285)
T ss_dssp HHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEE--EESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--C
T ss_pred HHHhcCCCCCC--EEEEEcCcccHHHHHHHhhCCEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--h
Confidence 34445555555 8999999999999999999989999 66778888877654 2377899999887764 7
Q ss_pred cceEEeccccccccchhhHHHHH--------------HHH--HhccCCCcEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFIL--------------FDW--DRILRPGGLLW 416 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L--------------~el--~RvLKPGG~Li 416 (467)
||+|+++... +|..+. +..++ .|+ .++|+|||.++
T Consensus 94 fD~vv~nlpy-~~~~~~-~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 94 FDTCVANLPY-QISSPF-VFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CSEEEEECCG-GGHHHH-HHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcEEEEecCc-ccchHH-HHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9999998776 666542 12233 233 36999999863
No 216
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.92 E-value=8.2e-09 Score=105.54 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=84.9
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC-Ccc-CCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR-LPF-FDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~-Lpf-~d~sFDlVis~~~L 389 (467)
+|||+| |+|.++..++..+. .|++ +|+++.+++.++++ + .+.++++|+.. +|. .+++||+|+++..+
T Consensus 175 ~VLDlG-G~G~~~~~la~~~~~~~v~~--vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 175 DIFVLG-DDDLTSIALMLSGLPKRIAV--LDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp EEEEES-CTTCHHHHHHHHTCCSEEEE--ECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred EEEEEC-CCCHHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 899999 99999999988764 7777 78888888887654 4 47899999888 764 46789999999776
Q ss_pred ccccchhhHHHHHHHHHhccCCCcEE-EEEecccCCCCH---HHHHHHHH-HcCcee
Q 012235 390 DGWLDMLLLDFILFDWDRILRPGGLL-WIDRFFCNKKDL---DDYMYMFL-QFRYKK 441 (467)
Q Consensus 390 ~h~~~~~~l~~~L~el~RvLKPGG~L-iI~~~~~~~~~~---~~~~~~i~-~~Gf~~ 441 (467)
. ... ...++.++.++|||||.+ +++.. ...... ..+.+.+. +.|+..
T Consensus 252 ~-~~~---~~~~l~~~~~~LkpgG~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 252 T-LEA---IRAFVGRGIATLKGPRCAGYFGIT-RRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp S-HHH---HHHHHHHHHHTBCSTTCEEEEEEC-TTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred c-hHH---HHHHHHHHHHHcccCCeEEEEEEe-cCcCCHHHHHHHHHHHHHhcCcch
Confidence 3 222 368999999999999954 44433 222333 45566676 777754
No 217
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.91 E-value=2.4e-09 Score=102.01 Aligned_cols=106 Identities=21% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCC----C
Q 012235 308 SDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQR----L 373 (467)
Q Consensus 308 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~----L 373 (467)
..++...++. +|||||||+|..+..+++. +..+++ +|+++.+++.++++ + .+.++.+++.. +
T Consensus 65 ~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l 140 (232)
T 3cbg_A 65 GLLISLTGAK--QVLEIGVFRGYSALAMALQLPPDGQIIA--CDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQL 140 (232)
T ss_dssp HHHHHHHTCC--EEEEECCTTSHHHHHHHTTSCTTCEEEE--EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEecCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 3344444444 8999999999999999986 567888 67778887777543 3 37788888543 3
Q ss_pred ccCC--CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 374 PFFD--NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 374 pf~d--~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+..+ ++||+|++.... .....++.++.++|||||.+++.+..+.
T Consensus 141 ~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 141 TQGKPLPEFDLIFIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp HTSSSCCCEEEEEECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred HhcCCCCCcCEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 3333 789999987653 1246789999999999999999876553
No 218
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.91 E-value=1.6e-09 Score=101.74 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=77.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||+|||+|..+..+++. +..+++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 60 ~l~~l~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 135 (229)
T 2avd_A 60 LLANLARLIQAK--KALDLGTFTGYSALALALALPADGRVVT--CEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD 135 (229)
T ss_dssp HHHHHHHHTTCC--EEEEECCTTSHHHHHHHTTSCTTCEEEE--EESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC--EEEEEcCCccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHH
Confidence 344444555555 8999999999999999986 568888 66667777766543 3 477888886543 1
Q ss_pred -cCC----CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 -FFD----NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 -f~d----~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+.+ ++||+|++.... .....++.++.++|+|||.+++.+...
T Consensus 136 ~~~~~~~~~~~D~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 136 ELLAAGEAGTFDVAVVDADK------ENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp HHHHTTCTTCEEEEEECSCS------TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred HHHhcCCCCCccEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 211 789999997653 123578999999999999999977654
No 219
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.91 E-value=1.6e-08 Score=93.27 Aligned_cols=112 Identities=8% Similarity=0.045 Sum_probs=81.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C-CccEEEccCCCCccCCCccceEEecccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G-LIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g-~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~ 393 (467)
+|||+|||+|.++..+++.+. .+++ +|+++.+++.+.++ + .+.++++|+..++ ++||+|+++..+..+.
T Consensus 52 ~vlD~g~G~G~~~~~l~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 52 VVADLGAGTGVLSYGALLLGAKEVIC--VEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQR 126 (207)
T ss_dssp EEEEETCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSSS
T ss_pred EEEEeeCCCCHHHHHHHHcCCCEEEE--EECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcccc
Confidence 899999999999999999865 6888 77788888888764 2 4788899988864 5899999998874433
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
. .....++.++.++| ||.+++. . ......+...+.++..||..
T Consensus 127 ~-~~~~~~l~~~~~~l--~~~~~~~-~-~~~~~~~~~~~~l~~~g~~~ 169 (207)
T 1wy7_A 127 K-HADRPFLLKAFEIS--DVVYSIH-L-AKPEVRRFIEKFSWEHGFVV 169 (207)
T ss_dssp T-TTTHHHHHHHHHHC--SEEEEEE-E-CCHHHHHHHHHHHHHTTEEE
T ss_pred C-CchHHHHHHHHHhc--CcEEEEE-e-CCcCCHHHHHHHHHHCCCeE
Confidence 2 22357889999998 5544432 1 12223345667788888754
No 220
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.90 E-value=9.2e-09 Score=103.00 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=84.9
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCC-CccCCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQR-LPFFDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~-Lpf~d~sFDlVi 384 (467)
++|||||||+|.++..++++ +.++++ +|+++.+++.++++ ..+.++.+|+.. ++..+++||+|+
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPTVEKAVM--VDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTCCEEEE--EESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 48999999999999999987 457888 66777887777542 237788898766 344578999999
Q ss_pred eccccccc---cchhh--HHHHHHHHHhccCCCcEEEEEeccc---CCCCHHHHHHHHHHcCceee
Q 012235 385 TTGFMDGW---LDMLL--LDFILFDWDRILRPGGLLWIDRFFC---NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 385 s~~~L~h~---~~~~~--l~~~L~el~RvLKPGG~LiI~~~~~---~~~~~~~~~~~i~~~Gf~~l 442 (467)
+.... ++ .+... ...++.++.++|||||.+++..... ..+....+.+.++.. |..+
T Consensus 157 ~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v 220 (314)
T 1uir_A 157 IDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYV 220 (314)
T ss_dssp EECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEE
T ss_pred ECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCce
Confidence 98765 54 22111 2578999999999999999864322 122233566666666 5444
No 221
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.90 E-value=2.1e-08 Score=106.35 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=90.8
Q ss_pred HHHHHhcCC--CCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc
Q 012235 306 LISDILAIK--PGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP 374 (467)
Q Consensus 306 ~I~~lL~l~--~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp 374 (467)
.+..++... ++. +|||+|||+|..+..+++. +..|++ +|+++.+++.+.++ + .+.++++|+..++
T Consensus 106 l~~~~L~~~~~~g~--~VLDl~aGpG~kt~~lA~~~~~~g~V~a--vDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~ 181 (479)
T 2frx_A 106 LPVAALFADGNAPQ--RVMDVAAAPGSKTTQISARMNNEGAILA--NEFSASRVKVLHANISRCGISNVALTHFDGRVFG 181 (479)
T ss_dssp HHHHHHTTTTCCCS--EEEESSCTTSHHHHHHHHHTTTCSEEEE--ECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH
T ss_pred HHHHHhCcccCCCC--EEEEeCCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh
Confidence 344566666 666 8999999999999999986 357888 77888888777543 3 3678888988876
Q ss_pred c-CCCccceEEecc------ccc-------cccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHH
Q 012235 375 F-FDNTMDLIHTTG------FMD-------GWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYM 433 (467)
Q Consensus 375 f-~d~sFDlVis~~------~L~-------h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~ 433 (467)
. .+++||.|++.. ++. +|... .....++.++.++|||||+|++++.....++ .+.+..+
T Consensus 182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~ 261 (479)
T 2frx_A 182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWL 261 (479)
T ss_dssp HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHH
T ss_pred hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHH
Confidence 4 568999999831 121 12111 0124689999999999999999887664443 3355556
Q ss_pred HHHcC
Q 012235 434 FLQFR 438 (467)
Q Consensus 434 i~~~G 438 (467)
+++.+
T Consensus 262 l~~~~ 266 (479)
T 2frx_A 262 KETYP 266 (479)
T ss_dssp HHHST
T ss_pred HHHCC
Confidence 66653
No 222
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.90 E-value=3.6e-09 Score=105.72 Aligned_cols=121 Identities=12% Similarity=0.039 Sum_probs=81.4
Q ss_pred ceEEEECCCccHHHHHHhhCC--CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCC-CccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQN--VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g--~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~-Lpf~d~sFDlVis 385 (467)
++|||||||+|.++..++++. .++++ +|+++.+++.++++ ..+.++.+|+.. ++..+++||+|++
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVVKHPSVESVVQ--CEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CEEEEECCCchHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 489999999999999999874 57888 66778888877642 237788888765 3445789999999
Q ss_pred ccccccccchh--hHHHHHHHHHhccCCCcEEEEEecc--cCCCCHHHHHHHHHHcCceeeE
Q 012235 386 TGFMDGWLDML--LLDFILFDWDRILRPGGLLWIDRFF--CNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 386 ~~~L~h~~~~~--~l~~~L~el~RvLKPGG~LiI~~~~--~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
.... ++.... ....++.++.++|||||.+++.... ...+....+.+.+++. |..+.
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~ 234 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVA 234 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHh-CCCce
Confidence 7654 332211 1246899999999999999986532 2211122455555555 54443
No 223
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.86 E-value=6e-09 Score=107.36 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHH----HHcC---CccEEEccCCCCccCCCccceEEec
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMI----ALRG---LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a----~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
++. +|||||||+|.++...++.|. .|++++.+. +++.| +.++ .|.++.++++.+.++ +.||+|+|.
T Consensus 83 ~~k--~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~---~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE 156 (376)
T 4hc4_A 83 RGK--TVLDVGAGTGILSIFCAQAGARRVYAVEASA---IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSE 156 (376)
T ss_dssp TTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECST---THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CCC--EEEEeCCCccHHHHHHHHhCCCEEEEEeChH---HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEee
Confidence 454 899999999999998888875 699966542 33333 3344 388999999998875 689999995
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
..-........+..++....|.|||||.++-
T Consensus 157 ~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 157 WMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccccccchhhhHHHHHHhhCCCCceECC
Confidence 4432233333467889999999999999864
No 224
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.86 E-value=1.3e-08 Score=103.21 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=73.6
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-c-cCCCccceEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-P-FFDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-p-f~d~sFDlVi 384 (467)
++|||||||+|.++..+++. +.+|++ +|+++.+++.++++ ..+.++++|+..+ + ..+++||+|+
T Consensus 122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~--VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVARHASIEQIDM--CEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CEEEEECCCccHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 48999999999999999987 467888 67778888877643 2478889987654 2 3467899999
Q ss_pred eccccc-cccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 385 TTGFMD-GWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~-h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+..... +.........++.++.++|+|||.|++.
T Consensus 200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 975421 1111111258999999999999999996
No 225
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.86 E-value=1.2e-08 Score=103.07 Aligned_cols=116 Identities=11% Similarity=0.062 Sum_probs=86.3
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEec
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
.++. +|||+|||+|.++.. ++.+..|++ +|+++.+++.++++ + .+.++++|+..+. ++||+|+++
T Consensus 194 ~~~~--~VLDlg~G~G~~~l~-a~~~~~V~~--vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLND--VVVDMFAGVGPFSIA-CKNAKKIYA--IDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMN 265 (336)
T ss_dssp CTTC--EEEETTCTTSHHHHH-TTTSSEEEE--EESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred CCCC--EEEEccCccCHHHHh-ccCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEEC
Confidence 4555 899999999999999 886778888 77778887777543 3 3788999988765 889999997
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc-CceeeEEEEc
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF-RYKKHKWAIS 447 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~-Gf~~l~W~~~ 447 (467)
.... . ..++.++.++|+|||.+++.++... .+...+.+... |+....+...
T Consensus 266 pP~~--~-----~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l~~~~~~~i~~~~~v 317 (336)
T 2yx1_A 266 LPKF--A-----HKFIDKALDIVEEGGVIHYYTIGKD---FDKAIKLFEKKCDCEVLEKRIV 317 (336)
T ss_dssp CTTT--G-----GGGHHHHHHHEEEEEEEEEEEEESS---SHHHHHHHHHHSEEEEEEEEEE
T ss_pred CcHh--H-----HHHHHHHHHHcCCCCEEEEEEeecC---chHHHHHHHHhcCCcEEEEEEE
Confidence 4331 1 2578999999999999999777655 33556666665 6665544433
No 226
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.86 E-value=7.3e-09 Score=104.22 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=83.5
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVis 385 (467)
++|||||||+|.++..+++. +..|++ +|+++.+++.++++ ..+.++++|+... +..+++||+|++
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVENIDI--CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 38999999999999999987 467888 67778888888653 1367888887653 334678999998
Q ss_pred ccccccccchhhH--HHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 386 TGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 386 ~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
+..- ++.....+ ..++.++.++|||||.+++..... ..+....+.+.+++. |..+
T Consensus 196 d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v 254 (321)
T 2pt6_A 196 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKV 254 (321)
T ss_dssp ECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred CCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCe
Confidence 7642 33221111 578999999999999999965322 112233555566655 5443
No 227
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.86 E-value=1.4e-08 Score=100.18 Aligned_cols=121 Identities=13% Similarity=0.077 Sum_probs=84.1
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCC-ccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRL-PFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~L-pf~d~sFDlVis 385 (467)
++|||||||+|.++..+++. +..+++ +|+++.+++.+++. ..+.++++|+... +..+++||+|++
T Consensus 80 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYKSVENIDI--CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEE--EESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CeEEEEeCCcCHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 48999999999999999987 357888 66778888887653 2367888887653 333688999999
Q ss_pred ccccccccchhhH--HHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeE
Q 012235 386 TGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 386 ~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
.... ++.....+ ..++.++.++|+|||.+++..... ..+....+.+.+++. |..+.
T Consensus 158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 217 (283)
T 2i7c_A 158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVE 217 (283)
T ss_dssp ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEE
T ss_pred cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceE
Confidence 6544 33322222 589999999999999999864321 112223455555555 55443
No 228
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.85 E-value=4.9e-09 Score=105.37 Aligned_cols=120 Identities=12% Similarity=0.003 Sum_probs=80.0
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCC-CccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~-Lpf~d~sFDlVis 385 (467)
++|||||||+|.++..+++. +..|++ +|+++.+++.++++ ..+.++.+|+.. ++..+++||+|++
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~~~~v~~--vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHESVEKVTM--CEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTCCEEEE--ECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHcCCCCEEEE--EECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 48999999999999999987 467888 77888888888753 136788888765 3445688999998
Q ss_pred ccccccccchhhH--HHHHHHHHhccCCCcEEEEEecc--cCCCCHHHHHHHHHHcCceee
Q 012235 386 TGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFF--CNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 386 ~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~--~~~~~~~~~~~~i~~~Gf~~l 442 (467)
...- ++.+...+ ..++.++.++|+|||.+++..-. ...+....+.+.++.. |..+
T Consensus 188 d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v 246 (314)
T 2b2c_A 188 DSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAV 246 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEE
T ss_pred cCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcc
Confidence 7643 43332222 57899999999999999996521 1111222455566665 5443
No 229
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.84 E-value=8.9e-09 Score=103.81 Aligned_cols=119 Identities=15% Similarity=0.100 Sum_probs=84.1
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc------CCccEEEccCCCC--ccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR------GLIPLYVTLNQRL--PFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r------g~i~~~~~d~~~L--pf~d~sFDlVis~~~L 389 (467)
+|||||||+|.++..++++ +..+++ +|+++.+++.+++. ..+.++++|+..+ .+.+++||+|++....
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~--VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTV--VELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEE--EESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEE--EECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 8999999999999999983 677877 77778899988764 2377889987665 2446899999996543
Q ss_pred ccccchhh--HHHHHHHHHhccCCCcEEEEEecccCCCC-HHHHHHHHHHcCceee
Q 012235 390 DGWLDMLL--LDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDYMYMFLQFRYKKH 442 (467)
Q Consensus 390 ~h~~~~~~--l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~~~~i~~~Gf~~l 442 (467)
++..... ...++.++.++|||||.|++......... ...+.+.+++. |..+
T Consensus 170 -~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v 223 (317)
T 3gjy_A 170 -GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHV 223 (317)
T ss_dssp -TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEE
T ss_pred -ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCce
Confidence 2211111 15799999999999999988664332211 22455566655 5444
No 230
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.84 E-value=1.6e-08 Score=99.41 Aligned_cols=120 Identities=9% Similarity=-0.008 Sum_probs=83.8
Q ss_pred ceEEEECCCccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCC-CccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~-Lpf~d~sFDlVis 385 (467)
++|||||||+|.++..++++ + ..|++ +|+++.+++.+++. ..+.++.+|+.. ++..+++||+|++
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 77 EHVLVVGGGDGGVIREILKHPSVKKATL--VDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp CEEEEESCTTCHHHHHHTTCTTCSEEEE--EESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CEEEEECCchHHHHHHHHhCCCCceEEE--EECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 48999999999999999987 4 57888 66678888877652 237788998765 3444689999999
Q ss_pred ccccccccchhh--HHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 386 TGFMDGWLDMLL--LDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 386 ~~~L~h~~~~~~--l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
.... ++..... ...++.++.++|+|||.+++..... ..+....+.+.+++. |..+
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v 213 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPIT 213 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCe
Confidence 7654 3322100 1478999999999999999864321 112223555666666 5543
No 231
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.83 E-value=1.5e-08 Score=99.64 Aligned_cols=120 Identities=9% Similarity=-0.019 Sum_probs=80.8
Q ss_pred ceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----------------CCccEEEccCCCC-ccCCCcc
Q 012235 319 RIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----------------GLIPLYVTLNQRL-PFFDNTM 380 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----------------g~i~~~~~d~~~L-pf~d~sF 380 (467)
++|||||||+|.++..+++.+ ..+++ +|+++.+++.+++. ..+.++.+|+..+ +. +++|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~v~~--vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDVDEVIM--VEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEE--EESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCCCEEEE--EECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 389999999999999999884 47888 66778888777643 1367888886543 33 6789
Q ss_pred ceEEeccccccccchhhH--HHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeE
Q 012235 381 DLIHTTGFMDGWLDMLLL--DFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l--~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
|+|++.... ++.....+ ..++.++.++|+|||.+++..... ..+....+.+.++.. |..+.
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~ 218 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVY 218 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceE
Confidence 999997654 33322111 578999999999999999864321 111223455555555 54443
No 232
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.82 E-value=2.4e-08 Score=99.09 Aligned_cols=120 Identities=9% Similarity=-0.039 Sum_probs=80.6
Q ss_pred ceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCC-CccCCCccceEEe
Q 012235 319 RIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQR-LPFFDNTMDLIHT 385 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~-Lpf~d~sFDlVis 385 (467)
.+|||||||+|.++..+++. ..+|++ +|+++.+++.++++ ..+.++++|+.. ++..+++||+|++
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~--vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAIL--CEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEE--EESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEE--EECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 48999999999999999987 367888 66778888777543 237788888665 3445688999998
Q ss_pred ccccccccc-hh--hHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCceee
Q 012235 386 TGFMDGWLD-ML--LLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 386 ~~~L~h~~~-~~--~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l 442 (467)
...- ++.. .. ....++.++.++|||||.+++..... ..+....+.+.+++. |..+
T Consensus 170 d~~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v 229 (296)
T 1inl_A 170 DSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT 229 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE
T ss_pred cCCC-cccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCce
Confidence 6542 3111 10 01578999999999999999964321 122233555566665 5443
No 233
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.80 E-value=1.2e-08 Score=100.60 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=90.9
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHH---HcC-CccEEEccCCCCccCCCccceEE
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMIA---LRG-LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~---~rg-~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
..++++. +|||+|||+|.|+..++++ ++ .+.++ |++..+..... ..+ .+..+..+++...+.++.||+|+
T Consensus 70 ~~l~~~~--~VLDLGaAPGGWSQvAa~~~~~~~v~g~--dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVl 145 (277)
T 3evf_A 70 GYVKLEG--RVIDLGCGRGGWCYYAAAQKEVSGVKGF--TLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLL 145 (277)
T ss_dssp TSSCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEE--CCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEE
T ss_pred CCCCCCC--EEEEecCCCCHHHHHHHHhcCCCcceeE--EEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEE
Confidence 3455665 8999999999999988876 43 35553 33321100000 001 13334555555567788999999
Q ss_pred eccccc---cccchhhHHHHHHHHHhccCCC-cEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc--cCCCCceEEEE
Q 012235 385 TTGFMD---GWLDMLLLDFILFDWDRILRPG-GLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS--PKSKDEVYLSA 458 (467)
Q Consensus 385 s~~~L~---h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~--~k~~devyl~a 458 (467)
|..+.. ++.+....-.++..+.++|+|| |.|++..|-.-..+...+.+.+++. |..+.+... .....|+|+.+
T Consensus 146 sD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~-F~~V~~~KPaSR~~S~E~Y~V~ 224 (277)
T 3evf_A 146 CDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR-FGGTVIRNPLSRNSTHEMYYVS 224 (277)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH-HCCEEECCTTSCTTCCCEEEES
T ss_pred ecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh-cCCEEEEeCCCCCCCCceEEEE
Confidence 988663 2444422224578889999999 9999966654355555777778777 777766544 12455788865
No 234
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.80 E-value=7.7e-09 Score=98.94 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=78.2
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCC-c
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRL-P 374 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~L-p 374 (467)
.+..++...++. +|||||||+|..+..+++. +..+++ +|+++.+++.++++ + .+.++++|+... +
T Consensus 61 ~l~~l~~~~~~~--~VLeiG~G~G~~~~~la~~~~~~~~v~~--iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 136 (237)
T 3c3y_A 61 LMSFVLKLVNAK--KTIEVGVFTGYSLLLTALSIPDDGKITA--IDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALD 136 (237)
T ss_dssp HHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHSCTTCEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHhhCCC--EEEEeCCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444444444 8999999999999999876 678888 66778877777542 3 267888886543 3
Q ss_pred -c-----CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 375 -F-----FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 375 -f-----~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+ .+++||+|++.... . ....++.++.++|||||.+++++..+
T Consensus 137 ~l~~~~~~~~~fD~I~~d~~~----~--~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 137 NLLQGQESEGSYDFGFVDADK----P--NYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp HHHHSTTCTTCEEEEEECSCG----G--GHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred HHHhccCCCCCcCEEEECCch----H--HHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 2 25789999986532 1 24678999999999999999976543
No 235
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.76 E-value=2.3e-08 Score=99.47 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=71.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCccCCCcc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPFFDNTM 380 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf~d~sF 380 (467)
+.+.+.+.++. +|||+|||+|.++..+++++..|++ +|+++.+++.++++ + .+.++.+|+..+++ .+|
T Consensus 34 i~~~~~~~~~~--~VLDiG~G~G~lt~~La~~~~~v~~--vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~ 107 (299)
T 2h1r_A 34 IIYAAKIKSSD--IVLEIGCGTGNLTVKLLPLAKKVIT--IDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKF 107 (299)
T ss_dssp HHHHHCCCTTC--EEEEECCTTSTTHHHHTTTSSEEEE--ECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--CCC
T ss_pred HHHhcCCCCcC--EEEEEcCcCcHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--ccC
Confidence 44455666665 8999999999999999999889999 77778888877653 2 47788899888775 489
Q ss_pred ceEEeccccccccchhhHHHHH---------------HHHHhccCCCcE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFIL---------------FDWDRILRPGGL 414 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L---------------~el~RvLKPGG~ 414 (467)
|+|+++... ++..+. +..++ +.+.|+++++|.
T Consensus 108 D~Vv~n~py-~~~~~~-~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 108 DVCTANIPY-KISSPL-IFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp SEEEEECCG-GGHHHH-HHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred CEEEEcCCc-ccccHH-HHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 999998776 666542 23333 346788888773
No 236
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.73 E-value=3.2e-08 Score=101.87 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=84.0
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCC-cc---CCCcc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRL-PF---FDNTM 380 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~L-pf---~d~sF 380 (467)
.++. +|||+|||+|.++..+++.|. .|++ +|+++.+++.++++ + .+.++++|+..+ +. ..++|
T Consensus 211 ~~~~--~VLDl~cGtG~~sl~la~~ga~~V~~--vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 211 AAGK--TVLNLFSYTAAFSVAAAMGGAMATTS--VDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp TBTC--EEEEETCTTTHHHHHHHHTTBSEEEE--EESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCC--eEEEEeeccCHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCc
Confidence 4454 899999999999999998775 7888 66677777766542 3 467889987653 21 24589
Q ss_pred ceEEeccccc-----ccc-chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHH----HHHHHcCceeeEE
Q 012235 381 DLIHTTGFMD-----GWL-DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYM----YMFLQFRYKKHKW 444 (467)
Q Consensus 381 DlVis~~~L~-----h~~-~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~----~~i~~~Gf~~l~W 444 (467)
|+|++..... +.. ....+..++.++.++|+|||.++++.....- ..+.+. +.....|...+..
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~-~~~~~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-TVSQFKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-CHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC-CHHHHHHHHHHHHHHcCCcEEEe
Confidence 9999865431 111 1122456788889999999999987654432 233333 3444556564433
No 237
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.72 E-value=2.7e-08 Score=98.25 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=71.2
Q ss_pred eEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCcc---ceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTM---DLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sF---DlVis~~~ 388 (467)
+|||+|||+|.++..+++. +.+|++ +|+++.+++.++++ + .+.++++|.... + .++| |+|+++..
T Consensus 126 ~vLDlG~GsG~~~~~la~~~~~~v~~--vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~-~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKFSDAIVFA--TDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F-KEKFASIEMILSNPP 201 (284)
T ss_dssp EEEEESCTTSHHHHHHHHHSSCEEEE--EESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G-GGGTTTCCEEEECCC
T ss_pred EEEEEeCchhHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c-ccccCCCCEEEEcCC
Confidence 8999999999999999988 778888 77888888877653 3 278889987762 3 2589 99999843
Q ss_pred ccc----------ccchhh------HHHHHHHHH-hccCCCcEEEEEe
Q 012235 389 MDG----------WLDMLL------LDFILFDWD-RILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h----------~~~~~~------l~~~L~el~-RvLKPGG~LiI~~ 419 (467)
... +.+... -..++.++. +.|+|||.+++..
T Consensus 202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 211 111100 016899999 9999999999843
No 238
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.70 E-value=1.7e-07 Score=97.81 Aligned_cols=139 Identities=18% Similarity=0.248 Sum_probs=90.9
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCC----CccCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQR----LPFFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~----Lpf~d~s 379 (467)
.+...++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++++|+.. +++.+++
T Consensus 281 ~l~~~~~~--~VLDlgcG~G~~~~~la~~~~~V~g--vD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 281 WLDVQPED--RVLDLFCGMGNFTLPLATQAASVVG--VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp HHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred hhcCCCCC--EEEECCCCCCHHHHHHHhhCCEEEE--EeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCC
Confidence 34444555 8999999999999999999889999 77788888877643 3 37899999876 4566789
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEccC--CCCceEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAISPK--SKDEVYLS 457 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~~k--~~devyl~ 457 (467)
||+|+++...... ..++..+.+ ++|++.++++ ++......-...+...||.........- .-..+=..
T Consensus 357 fD~Vv~dPPr~g~------~~~~~~l~~-~~p~~ivyvs---c~p~tlard~~~l~~~Gy~~~~~~~~d~Fp~t~HvE~v 426 (433)
T 1uwv_A 357 FDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVS---CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 (433)
T ss_dssp CSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEE---SCHHHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCEEE
T ss_pred CCEEEECCCCccH------HHHHHHHHh-cCCCeEEEEE---CChHHHHhhHHHHHHCCcEEEEEEEeccCCCCCeEEEE
Confidence 9999997654211 234444443 7899988873 2222233223445566887765443322 22334445
Q ss_pred EEeec
Q 012235 458 ALLEK 462 (467)
Q Consensus 458 avlqK 462 (467)
++++|
T Consensus 427 ~ll~r 431 (433)
T 1uwv_A 427 VLFSR 431 (433)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 56655
No 239
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.69 E-value=4.6e-08 Score=101.26 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=76.4
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCc-cCCCccceEEeccc
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLP-FFDNTMDLIHTTGF 388 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lp-f~d~sFDlVis~~~ 388 (467)
++. +|||+|||+|.++..+++.|..|++ +|+++.+++.+.++ +. ..+.++|+..+. ...+.||+|+++..
T Consensus 214 ~g~--~VLDlg~GtG~~sl~~a~~ga~V~a--vDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 214 PGE--RVLDVYSYVGGFALRAARKGAYALA--VDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TTC--EEEEESCTTTHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred CCC--eEEEcccchhHHHHHHHHcCCeEEE--EECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 355 8999999999999999999888777 78888888877653 33 346678866542 22344999998754
Q ss_pred ccccc------chhhHHHHHHHHHhccCCCcEEEEEecccCC
Q 012235 389 MDGWL------DMLLLDFILFDWDRILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 389 L~h~~------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~ 424 (467)
..... .......++..+.++|||||.+++.+.....
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~ 331 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL 331 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence 31110 0122457889999999999999987765543
No 240
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.69 E-value=3.8e-08 Score=94.92 Aligned_cols=76 Identities=8% Similarity=0.097 Sum_probs=59.1
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCC-CccceEEec
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFD-NTMDLIHTT 386 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d-~sFDlVis~ 386 (467)
.+.++. +|||+|||+|.++..+++++..|++ +|+++.+++.++++ +.+.++++|+..+++++ ..| .|+++
T Consensus 27 ~~~~~~--~VLDiG~G~G~lt~~l~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 27 RLNEHD--NIFEIGSGKGHFTLELVQRCNFVTA--IEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp CCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--ECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEE
T ss_pred CCCCCC--EEEEEeCCchHHHHHHHHcCCeEEE--EECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEe
Confidence 344454 8999999999999999999988998 77788898888765 34789999999988764 445 56666
Q ss_pred ccccccc
Q 012235 387 GFMDGWL 393 (467)
Q Consensus 387 ~~L~h~~ 393 (467)
... ++.
T Consensus 102 lPy-~~~ 107 (244)
T 1qam_A 102 IPY-NIS 107 (244)
T ss_dssp CCG-GGH
T ss_pred CCc-ccC
Confidence 554 443
No 241
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.67 E-value=2.1e-07 Score=93.78 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=82.8
Q ss_pred ceEEEECCCccHHHHHHhhCC-------CEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTFAARMREQN-------VTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g-------~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
.+|||+|||+|.++..+++.. ..++| +|+++.+++.++.+ +. +.++++|.... ...+.||+|+++
T Consensus 132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~G--iDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N 208 (344)
T 2f8l_A 132 VSILDPACGTANLLTTVINQLELKGDVDVHASG--VDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 208 (344)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEE--EESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEE--EECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence 389999999999999888763 56777 66777777766542 43 67888887653 346789999999
Q ss_pred cccccccchhh---------------HHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHHHcCc
Q 012235 387 GFMDGWLDMLL---------------LDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 387 ~~L~h~~~~~~---------------l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf 439 (467)
..+.++...+. ...++..+.+.|+|||++++..+.. .......+.+.+.+.|+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH 278 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence 88744432210 1257999999999999999876433 22334466666666554
No 242
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.67 E-value=3.4e-08 Score=101.53 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=77.3
Q ss_pred CCCCceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHc----C---CccEEEccCCCCcc----CCCccce
Q 012235 315 PGETRIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALR----G---LIPLYVTLNQRLPF----FDNTMDL 382 (467)
Q Consensus 315 ~g~~r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf----~d~sFDl 382 (467)
++. +|||+|||+|.++..+++.|. .|++ +|+++.+++.+.++ + .+.++++|+..+.. .+++||+
T Consensus 217 ~~~--~VLDl~~G~G~~~~~la~~g~~~v~~--vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 292 (396)
T 2as0_A 217 PGD--RVLDVFTYTGGFAIHAAIAGADEVIG--IDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI 292 (396)
T ss_dssp TTC--EEEETTCTTTHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCC--eEEEecCCCCHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCE
Confidence 454 899999999999999999864 7888 67778887776542 3 36788888766532 2578999
Q ss_pred EEeccccccccc------hhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 383 IHTTGFMDGWLD------MLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 383 Vis~~~L~h~~~------~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
|++......... ......++.++.++|+|||.+++.+....
T Consensus 293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 999654311110 12346789999999999999998776543
No 243
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.66 E-value=5.7e-08 Score=96.17 Aligned_cols=117 Identities=14% Similarity=0.196 Sum_probs=85.5
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHH----cC---CccEEEccCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIAL----RG---LIPLYVTLNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~----rg---~i~~~~~d~~~Lpf~d~sFDlVi 384 (467)
.++|. +|||+|||+|.++..++.+| ..|++ +|+++.+++.+.+ ++ .+.++.+|+..++. .+.||.|+
T Consensus 123 ~~~g~--~VlD~~aG~G~~~i~~a~~g~~~V~a--vD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi 197 (278)
T 3k6r_A 123 AKPDE--LVVDMFAGIGHLSLPIAVYGKAKVIA--IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CCTTC--EEEETTCTTTTTTHHHHHHTCCEEEE--ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred cCCCC--EEEEecCcCcHHHHHHHHhcCCeEEE--EECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEE
Confidence 45676 99999999999999999886 57888 6777777776654 23 37788899888764 57899999
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCC----CCHHHHHHHHHHcCcee
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNK----KDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~----~~~~~~~~~i~~~Gf~~ 441 (467)
++.... . ..++..+.++|||||.+.+..+.... +..+.+.+..+..|++.
T Consensus 198 ~~~p~~--~-----~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 198 MGYVVR--T-----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ECCCSS--G-----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred ECCCCc--H-----HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence 875431 1 25778888999999998775554322 22345666777788753
No 244
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.66 E-value=2.3e-07 Score=90.66 Aligned_cols=88 Identities=11% Similarity=-0.075 Sum_probs=69.0
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----------CCccEEEccCCCCccCCCccceEEeccc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----------GLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----------g~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
++|||||||+|.++..+++.+.+|++ +|+++.+++.+++. ..+.++.+|+..+. ++||+|++...
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~v~~--veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~~ 148 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKYDTHIDF--VQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQE 148 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTSSCEEEE--ECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESSC
T ss_pred CEEEEEeCCcCHHHHHHHhCCCEEEE--EECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECCC
Confidence 48999999999999999887656777 77778887766532 23678888877654 78999998732
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
++ ..++.++.++|||||.+++..
T Consensus 149 -----dp---~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 149 -----PD---IHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CC---HHHHHHHHTTEEEEEEEEEEE
T ss_pred -----Ch---HHHHHHHHHhcCCCcEEEEEc
Confidence 23 248999999999999999864
No 245
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.65 E-value=9.6e-08 Score=95.27 Aligned_cols=84 Identities=6% Similarity=0.094 Sum_probs=67.4
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCCCccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFDNTMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d~sFDl 382 (467)
|.+.+.+.+++ +|||||||+|.++..|++++..|++ +|+++.+++.++++ +.+.++++|+..+++++.+||.
T Consensus 42 Iv~~l~~~~~~--~VLEIG~G~G~lT~~La~~~~~V~a--VEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~ 117 (295)
T 3gru_A 42 AVESANLTKDD--VVLEIGLGKGILTEELAKNAKKVYV--IEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNK 117 (295)
T ss_dssp HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEE--EESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSE
T ss_pred HHHhcCCCCcC--EEEEECCCchHHHHHHHhcCCEEEE--EECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccE
Confidence 44455666666 8999999999999999999999999 55667777776553 4588999999999988889999
Q ss_pred EEeccccccccch
Q 012235 383 IHTTGFMDGWLDM 395 (467)
Q Consensus 383 Vis~~~L~h~~~~ 395 (467)
|+++... ++..+
T Consensus 118 Iv~NlPy-~is~p 129 (295)
T 3gru_A 118 VVANLPY-QISSP 129 (295)
T ss_dssp EEEECCG-GGHHH
T ss_pred EEEeCcc-cccHH
Confidence 9999776 55544
No 246
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.64 E-value=4.1e-08 Score=100.61 Aligned_cols=102 Identities=16% Similarity=0.041 Sum_probs=76.0
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC--ccEEEccCCCCcc----CCCccceEEecccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL--IPLYVTLNQRLPF----FDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~--i~~~~~d~~~Lpf----~d~sFDlVis~~~L 389 (467)
+|||+|||+|.++..+++.+..|++ +|+++.+++.+.++ +. +.++++|+..+.. .+++||+|++....
T Consensus 212 ~VLDlg~G~G~~~~~la~~~~~v~~--vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 212 RALDVFSYAGGFALHLALGFREVVA--VDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEETCTTTHHHHHHHHHEEEEEE--EESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred eEEEeeeccCHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 8999999999999999988667777 77788888777643 32 6788898766532 25789999986543
Q ss_pred cccc------chhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 390 DGWL------DMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 390 ~h~~------~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.... .......++.++.++|+|||.+++.+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1111 012346789999999999999999876543
No 247
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.64 E-value=1.8e-09 Score=103.82 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=74.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCC-Ccc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFD-NTM 380 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d-~sF 380 (467)
.+.+.+.+.++. +|||+|||+|.++..+++++..|++ +|+++.+++.+.++ ..+.++++|+..+++++ ++|
T Consensus 20 ~i~~~~~~~~~~--~VLDiG~G~G~~~~~l~~~~~~v~~--id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 20 QIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQVTS--IELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSEEEE--SSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcCCCCCC--EEEEEeCCCCHHHHHHHHhCCeEEE--EECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 344555665565 8999999999999999999988998 66767676665543 23778899999988764 689
Q ss_pred ceEEeccccccccchhhHH----------HHH----HHHHhccCCCcEEEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLD----------FIL----FDWDRILRPGGLLWID 418 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~----------~~L----~el~RvLKPGG~LiI~ 418 (467)
.|+++... +..... +. ..+ +.+.|+|+|||.+.+.
T Consensus 96 -~vv~n~Py-~~~~~~-~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 96 -KIVGNIPY-HLSTQI-IKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp -EEEEECCS-SSCHHH-HHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred -EEEEeCCc-cccHHH-HHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 77776443 221110 11 233 6689999999987663
No 248
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.64 E-value=5.6e-08 Score=100.00 Aligned_cols=122 Identities=12% Similarity=-0.115 Sum_probs=83.6
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc----C----CccEEEccCCCCcc----CCCcc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR----G----LIPLYVTLNQRLPF----FDNTM 380 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~Lpf----~d~sF 380 (467)
.++. +|||+|||+|.++..+++.| ..|++ +|+++.+++.+.++ + .+.++++|+..+.. .+++|
T Consensus 219 ~~~~--~VLDl~cG~G~~sl~la~~g~~~V~~--vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENK--RVLNCFSYTGGFAVSALMGGCSQVVS--VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTC--EEEEESCTTCSHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCC--eEEEeeccCCHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence 4454 89999999999999999986 47888 77778887777542 3 35688888766532 15689
Q ss_pred ceEEeccccccc------cchhhHHHHHHHHHhccCCCcEEEEEecccCCC--CHH-HHHHHHHHcCc
Q 012235 381 DLIHTTGFMDGW------LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKK--DLD-DYMYMFLQFRY 439 (467)
Q Consensus 381 DlVis~~~L~h~------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~--~~~-~~~~~i~~~Gf 439 (467)
|+|++....... ........++.++.++|+|||.+++++....-. ... .+.+.+...|+
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 999997543111 001235688999999999999999976544322 112 33335556663
No 249
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.63 E-value=6.6e-08 Score=107.04 Aligned_cols=121 Identities=15% Similarity=0.062 Sum_probs=86.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCE-EEEEecCCCHHHHHHHHHc----C----CccEEEccCCC-CccCCCccce
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVT-IVSTALNLGAPFNEMIALR----G----LIPLYVTLNQR-LPFFDNTMDL 382 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~-V~gvdiDiS~~~l~~a~~r----g----~i~~~~~d~~~-Lpf~d~sFDl 382 (467)
..++. +|||+|||+|.++..++..|.. |++ +|+|+.+++.+.++ + .+.++++|+.. ++...++||+
T Consensus 537 ~~~g~--~VLDlg~GtG~~sl~aa~~ga~~V~a--VD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~ 612 (703)
T 3v97_A 537 MSKGK--DFLNLFSYTGSATVHAGLGGARSTTT--VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDL 612 (703)
T ss_dssp HCTTC--EEEEESCTTCHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred hcCCC--cEEEeeechhHHHHHHHHCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccE
Confidence 34555 8999999999999999988764 888 77888888887653 2 36788998776 4455689999
Q ss_pred EEeccccc--------cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 383 IHTTGFMD--------GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 383 Vis~~~L~--------h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
|++..... .+........++.++.++|+|||.|+++.-...-.. -.+.+.+.|++
T Consensus 613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~---~~~~l~~~g~~ 675 (703)
T 3v97_A 613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRM---DLDGLAKLGLK 675 (703)
T ss_dssp EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCC---CHHHHHHTTEE
T ss_pred EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc---CHHHHHHcCCc
Confidence 99965321 111123356789999999999999998764422111 13456677765
No 250
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.61 E-value=1.1e-07 Score=97.46 Aligned_cols=125 Identities=15% Similarity=0.062 Sum_probs=83.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlV 383 (467)
+.+.+...++. +|||+|||+|.++..++++ +..++|+|+| +.+++.+ ..+.++++|....+. ++.||+|
T Consensus 31 ~~~~~~~~~~~--~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~--~~~~~~a---~~~~~~~~D~~~~~~-~~~fD~I 102 (421)
T 2ih2_A 31 MVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEID--PKALDLP---PWAEGILADFLLWEP-GEAFDLI 102 (421)
T ss_dssp HHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESC--TTTCCCC---TTEEEEESCGGGCCC-SSCEEEE
T ss_pred HHHhhccCCCC--EEEECCCCChHHHHHHHHHhCCCCeEEEEECC--HHHHHhC---CCCcEEeCChhhcCc-cCCCCEE
Confidence 33444433343 8999999999999999974 5789996655 4444333 347788998877653 5789999
Q ss_pred Eeccccccccc---------hh-----------------hHHHHHHHHHhccCCCcEEEEEeccc--CCCCHHHHHHHHH
Q 012235 384 HTTGFMDGWLD---------ML-----------------LLDFILFDWDRILRPGGLLWIDRFFC--NKKDLDDYMYMFL 435 (467)
Q Consensus 384 is~~~L~h~~~---------~~-----------------~l~~~L~el~RvLKPGG~LiI~~~~~--~~~~~~~~~~~i~ 435 (467)
+++-....... .. ....++..+.++|+|||.+++..+.. .....+.+.+.+.
T Consensus 103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~ 182 (421)
T 2ih2_A 103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA 182 (421)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHH
Confidence 99754421111 11 11256889999999999999876543 2223346777777
Q ss_pred HcCc
Q 012235 436 QFRY 439 (467)
Q Consensus 436 ~~Gf 439 (467)
+.|+
T Consensus 183 ~~~~ 186 (421)
T 2ih2_A 183 REGK 186 (421)
T ss_dssp HHSE
T ss_pred hcCC
Confidence 7666
No 251
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.58 E-value=4.5e-07 Score=88.17 Aligned_cols=132 Identities=12% Similarity=-0.014 Sum_probs=85.3
Q ss_pred HHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceE
Q 012235 309 DILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLI 383 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlV 383 (467)
.++...+ ..+|||||||+|.++..+. .+..+++ .|+++.+++.+... +. ..+.+.|....+. +++||+|
T Consensus 99 ~i~~~~~--p~~VLDlGCG~gpLal~~~-~~~~y~a--~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~-~~~~Dvv 172 (253)
T 3frh_A 99 FIFSAET--PRRVLDIACGLNPLALYER-GIASVWG--CDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP-AEAGDLA 172 (253)
T ss_dssp HHTSSCC--CSEEEEETCTTTHHHHHHT-TCSEEEE--EESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC-CCBCSEE
T ss_pred HHhcCCC--CCeEEEecCCccHHHHHhc-cCCeEEE--EeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC-CCCcchH
Confidence 4455522 3489999999999999888 6678888 66667888777643 32 5677888777665 4589999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe---cccCCCCHH-HHHHHHHHcCceeeEEEEccC
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR---FFCNKKDLD-DYMYMFLQFRYKKHKWAISPK 449 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~---~~~~~~~~~-~~~~~i~~~Gf~~l~W~~~~k 449 (467)
++.-+++|..+.. .....++.+.|+++|.++-.. .......++ .|.+.+++. ...-.|.+...
T Consensus 173 Lllk~lh~LE~q~--~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~-~~~~~~~~~~~ 239 (253)
T 3frh_A 173 LIFKLLPLLEREQ--AGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGG-LPAEFEIEDKK 239 (253)
T ss_dssp EEESCHHHHHHHS--TTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHH-SCTTEEEEEEE
T ss_pred HHHHHHHHhhhhc--hhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHH-hhccchhhhhe
Confidence 9998885544332 234448888999998766543 111222222 566666654 34445655544
No 252
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.58 E-value=1.3e-07 Score=98.82 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=72.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccc
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMD 381 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFD 381 (467)
+..++.+.++. +|||+|||+|.++..+++.+..|++ +|+++.+++.++++ +. +.++.+|+..+.. .+||
T Consensus 282 ~~~~~~~~~~~--~VLDlgcG~G~~sl~la~~~~~V~g--vD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD 355 (425)
T 2jjq_A 282 VRKVSELVEGE--KILDMYSGVGTFGIYLAKRGFNVKG--FDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFD 355 (425)
T ss_dssp HHHHHHHCCSS--EEEEETCTTTHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCS
T ss_pred HHHhhccCCCC--EEEEeeccchHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCC
Confidence 33333344454 8999999999999999999889999 77788888877543 33 7888999888753 2899
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+++....... +.++..+ +.|+|||.++++
T Consensus 356 ~Vv~dPPr~g~~-----~~~~~~l-~~l~p~givyvs 386 (425)
T 2jjq_A 356 TVIVDPPRAGLH-----PRLVKRL-NREKPGVIVYVS 386 (425)
T ss_dssp EEEECCCTTCSC-----HHHHHHH-HHHCCSEEEEEE
T ss_pred EEEEcCCccchH-----HHHHHHH-HhcCCCcEEEEE
Confidence 999976542111 2345555 459999999884
No 253
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.46 E-value=1.5e-07 Score=92.94 Aligned_cols=142 Identities=15% Similarity=0.054 Sum_probs=87.4
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHH---cC-CccEEEccCCCCccCCCccceEEe
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMIAL---RG-LIPLYVTLNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~---rg-~i~~~~~d~~~Lpf~d~sFDlVis 385 (467)
.++++. +|||+|||+|.|+..++++ ++ .|.++ |++..+...+.. .+ .+.....++....+.++.+|+|+|
T Consensus 87 ~Lk~~~--~VLDLGaAPGGWsQvAa~~~gv~sV~Gv--dvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLS 162 (282)
T 3gcz_A 87 YVKPTG--IVVDLGCGRGGWSYYAASLKNVKKVMAF--TLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLC 162 (282)
T ss_dssp SCCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEE--CCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEE
T ss_pred CCCCCC--EEEEeCCCCCHHHHHHHHhcCCCeeeeE--EeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEe
Confidence 456665 8999999999999988865 43 36664 443321111100 01 122233333333456789999999
Q ss_pred ccccc---cccchhhHHHHHHHHHhccCCC--cEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc--cCCCCceEEEE
Q 012235 386 TGFMD---GWLDMLLLDFILFDWDRILRPG--GLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS--PKSKDEVYLSA 458 (467)
Q Consensus 386 ~~~L~---h~~~~~~l~~~L~el~RvLKPG--G~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~--~k~~devyl~a 458 (467)
..+.. ++.+....-.++.-+.++|+|| |.|++-.|-.-..+...+.+.+++. |..+.+... .....|+|+.+
T Consensus 163 DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~-F~~V~~~KPaSR~~S~E~Y~V~ 241 (282)
T 3gcz_A 163 DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLK-HGGGLVRVPLSRNSTHEMYWVS 241 (282)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHH-HCCEEECCTTSCTTCCCEEEET
T ss_pred cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHh-cCCEEEEcCCCcccCcceeEEE
Confidence 88873 1223322223566678999999 9999977654345555777777777 777766544 12455788865
No 254
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.43 E-value=6.9e-07 Score=87.12 Aligned_cols=78 Identities=9% Similarity=0.166 Sum_probs=62.6
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCCccCC----C
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRLPFFD----N 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~Lpf~d----~ 378 (467)
|.+.+.+.++. +|||||||+|.++..|++++..|++ +|+++.+++.+.++ +.+.++++|+..+++++ +
T Consensus 21 iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~a--vEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 96 (255)
T 3tqs_A 21 IVSAIHPQKTD--TLVEIGPGRGALTDYLLTECDNLAL--VEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDK 96 (255)
T ss_dssp HHHHHCCCTTC--EEEEECCTTTTTHHHHTTTSSEEEE--EECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSS
T ss_pred HHHhcCCCCcC--EEEEEcccccHHHHHHHHhCCEEEE--EECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCC
Confidence 44556666666 8999999999999999999989999 66778888888764 35889999999987643 5
Q ss_pred ccceEEecccc
Q 012235 379 TMDLIHTTGFM 389 (467)
Q Consensus 379 sFDlVis~~~L 389 (467)
.|| |+++...
T Consensus 97 ~~~-vv~NlPY 106 (255)
T 3tqs_A 97 PLR-VVGNLPY 106 (255)
T ss_dssp CEE-EEEECCH
T ss_pred CeE-EEecCCc
Confidence 688 7777665
No 255
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.37 E-value=8.8e-07 Score=87.09 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=70.9
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc----CC-ccEEEccCCCCccCCCccceEEeccccc
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR----GL-IPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r----g~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
..+|||||||+|.++..++.. ..++++ +|+++.+++.+..+ |. ..+.+.|...-+ +.+.||+|++.-+++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a--~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIA--SDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEE--EESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEE--EeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 348999999999999998876 457777 66668888777643 33 456666654433 578899999999995
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|..+.. ....+ ++.+.|+|+|.++-..
T Consensus 210 ~Le~q~-kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 210 CLETQQ-RGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHHS-TTHHH-HHHHHSSCSEEEEEEE
T ss_pred Hhhhhh-hHHHH-HHHHHhCCCCEEEecc
Confidence 554442 23444 9999999999876643
No 256
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.34 E-value=1.4e-06 Score=85.72 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=64.7
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc---CCccEEEccCCCCccCCC-ccce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR---GLIPLYVTLNQRLPFFDN-TMDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r---g~i~~~~~d~~~Lpf~d~-sFDl 382 (467)
|.+.+.+.++ +|||||||+|.++..|++++..|++ +|+++.+++.+.++ ..+.++++|+..+++++. .+|.
T Consensus 39 Iv~~~~~~~~---~VLEIG~G~G~lt~~L~~~~~~V~a--vEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 39 IVEAARPFTG---PVFEVGPGLGALTRALLEAGAEVTA--IEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp HHHHHCCCCS---CEEEECCTTSHHHHHHHHTTCCEEE--EESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEE
T ss_pred HHHhcCCCCC---eEEEEeCchHHHHHHHHHcCCEEEE--EECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccE
Confidence 3444555544 7999999999999999999989999 56667888888765 348899999998887653 7899
Q ss_pred EEeccccccccch
Q 012235 383 IHTTGFMDGWLDM 395 (467)
Q Consensus 383 Vis~~~L~h~~~~ 395 (467)
|+++... +...+
T Consensus 114 iv~NlPy-~iss~ 125 (271)
T 3fut_A 114 LVANLPY-HIATP 125 (271)
T ss_dssp EEEEECS-SCCHH
T ss_pred EEecCcc-cccHH
Confidence 9999876 55444
No 257
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.34 E-value=1.8e-06 Score=88.38 Aligned_cols=124 Identities=9% Similarity=-0.058 Sum_probs=79.6
Q ss_pred CceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHcC--------------CccEEEccCCCCcc----CCC
Q 012235 318 TRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALRG--------------LIPLYVTLNQRLPF----FDN 378 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~rg--------------~i~~~~~d~~~Lpf----~d~ 378 (467)
.++|||||||+|.++..+++++ ..|+. +|+++.+++.+++.- .+.++.+|+..+.- .++
T Consensus 189 pkrVL~IGgG~G~~arellk~~~~~Vt~--VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 189 GKDVLILGGGDGGILCEIVKLKPKMVTM--VEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCSEEEE--EESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCEEEEEECChhHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 4689999999999999998885 45666 667788888887531 36778888766432 367
Q ss_pred ccceEEeccccccc--cc-hhhHHHHHHHH----HhccCCCcEEEEEecccCCCCHH-HHHHHHHHcCceeeEE
Q 012235 379 TMDLIHTTGFMDGW--LD-MLLLDFILFDW----DRILRPGGLLWIDRFFCNKKDLD-DYMYMFLQFRYKKHKW 444 (467)
Q Consensus 379 sFDlVis~~~L~h~--~~-~~~l~~~L~el----~RvLKPGG~LiI~~~~~~~~~~~-~~~~~i~~~Gf~~l~W 444 (467)
+||+|+....-..+ .+ ......++..+ .++|+|||.+++..-...-.+.. .+.+.++++ |..+.+
T Consensus 267 ~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~~~~e~~~~~~~~l~~~-F~~v~~ 339 (364)
T 2qfm_A 267 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL-YCPVEF 339 (364)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS-SSCEEE
T ss_pred CceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcCCcchHHHHHHHHHHHHHh-CCceEE
Confidence 89999987532010 01 00113455555 99999999998864333222111 333335555 766666
No 258
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.33 E-value=1.4e-06 Score=90.12 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=76.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC----------------------------------------CEEEEEe
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN----------------------------------------VTIVSTA 346 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g----------------------------------------~~V~gvd 346 (467)
+..+....++. .|||.+||+|+++..++..+ ..|+|
T Consensus 193 ll~l~~~~~~~--~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G-- 268 (393)
T 3k0b_A 193 LVLLTSWHPDR--PFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG-- 268 (393)
T ss_dssp HHHHSCCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE--
T ss_pred HHHHhCCCCCC--eEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE--
Confidence 33444555555 89999999999988777542 34777
Q ss_pred cCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc-cccchhhHHHHHHHHHhccCC--CcEEE
Q 012235 347 LNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD-GWLDMLLLDFILFDWDRILRP--GGLLW 416 (467)
Q Consensus 347 iDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~-h~~~~~~l~~~L~el~RvLKP--GG~Li 416 (467)
+|+++.|++.++.+ + .+.+.++|+..++.+ .+||+|+++.... ...+...+..+..++.++||+ ||.++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 67778888877643 3 378999999988764 5899999996542 223333455667777777776 99888
Q ss_pred EEec
Q 012235 417 IDRF 420 (467)
Q Consensus 417 I~~~ 420 (467)
+.+.
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8653
No 259
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.32 E-value=9.7e-07 Score=92.26 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=77.2
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---------------CCEEEEEecCCCHHHHHHHHH----cC----C
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---------------NVTIVSTALNLGAPFNEMIAL----RG----L 362 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------------g~~V~gvdiDiS~~~l~~a~~----rg----~ 362 (467)
.+.+++...++. +|||.|||+|.++..+++. +..++| +|+++.+.+.++. .+ .
T Consensus 162 ~mv~~l~~~~~~--~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G--~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 162 AMVDCINPQMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHG--VDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHCCCTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEE--EESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHhCCCCCC--EEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEE--EeCCHHHHHHHHHHHHHhCCCcCC
Confidence 344555555554 8999999999999888763 356888 5556666666643 23 3
Q ss_pred ccEEEccCCCCccCCCccceEEeccccccccchh--------------hHHHHHHHHHhccCCCcEEEEEec
Q 012235 363 IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML--------------LLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 363 i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~--------------~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+.+.++|....+.. ..||+|+++..+.+..... ....++..+.++|||||++++..+
T Consensus 238 ~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 57889998776653 4899999997764322110 013689999999999999988764
No 260
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.27 E-value=3e-06 Score=87.36 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=78.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC----------------------------------------CEEEEEe
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN----------------------------------------VTIVSTA 346 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g----------------------------------------~~V~gvd 346 (467)
+..+....++. .+||.+||+|+++...+..+ ..++|
T Consensus 186 ll~l~~~~~~~--~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G-- 261 (384)
T 3ldg_A 186 IILLSNWFPDK--PFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG-- 261 (384)
T ss_dssp HHHHTTCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE--
T ss_pred HHHHhCCCCCC--eEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE--
Confidence 33444555555 89999999999988777542 34788
Q ss_pred cCCCHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc-cccchhhHHHHHHHHHhccCC--CcEEE
Q 012235 347 LNLGAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD-GWLDMLLLDFILFDWDRILRP--GGLLW 416 (467)
Q Consensus 347 iDiS~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~-h~~~~~~l~~~L~el~RvLKP--GG~Li 416 (467)
+|+++.|++.++++ + .+.+.++|+..++.+ .+||+|+++-... ...+...+..+..++.++||+ ||.++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 66778888877643 3 378999999988764 5899999996652 233344466777778888877 99988
Q ss_pred EEec
Q 012235 417 IDRF 420 (467)
Q Consensus 417 I~~~ 420 (467)
+.+.
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8664
No 261
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.27 E-value=9.3e-07 Score=90.19 Aligned_cols=90 Identities=7% Similarity=0.039 Sum_probs=66.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCc--cCC--------------
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLP--FFD-------------- 377 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lp--f~d-------------- 377 (467)
+|||+|||+|.++..+++.+..|++ +|+++.+++.++++ + .+.++.+|+..+. +..
T Consensus 216 ~vLDl~cG~G~~~l~la~~~~~V~g--vd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 216 DLLELYCGNGNFSLALARNFDRVLA--TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp EEEEESCTTSHHHHHHGGGSSEEEE--ECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred EEEEccCCCCHHHHHHHhcCCEEEE--EECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 7999999999999999988788998 77888888777542 3 3778888876542 221
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
.+||+|+....-. .+..++.+.|+++|.+++.+.
T Consensus 294 ~~fD~Vv~dPPr~---------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 294 YQCETIFVDPPRS---------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCEEEEEECCCTT---------CCCHHHHHHHTTSSEEEEEES
T ss_pred CCCCEEEECcCcc---------ccHHHHHHHHhCCCEEEEEEC
Confidence 3799999765431 234456677789998888654
No 262
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.27 E-value=1.8e-06 Score=88.87 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred HhcCCCCCCceEEEECCCccHHHHHHhhCC----------------------------------------CEEEEEecCC
Q 012235 310 ILAIKPGETRIGLDFGVGTGTFAARMREQN----------------------------------------VTIVSTALNL 349 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG~~a~~La~~g----------------------------------------~~V~gvdiDi 349 (467)
+....++. .|||.|||+|+++..++..+ ..|+| +|+
T Consensus 190 ~~~~~~~~--~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G--vDi 265 (385)
T 3ldu_A 190 LTPWKAGR--VLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG--YDI 265 (385)
T ss_dssp TSCCCTTS--CEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE--EES
T ss_pred hhCCCCCC--eEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE--EEC
Confidence 33444554 89999999999998887652 45788 667
Q ss_pred CHHHHHHHHHc----C---CccEEEccCCCCccCCCccceEEeccccc-cccchhhHHHHHHHHHhccCC--CcEEEEEe
Q 012235 350 GAPFNEMIALR----G---LIPLYVTLNQRLPFFDNTMDLIHTTGFMD-GWLDMLLLDFILFDWDRILRP--GGLLWIDR 419 (467)
Q Consensus 350 S~~~l~~a~~r----g---~i~~~~~d~~~Lpf~d~sFDlVis~~~L~-h~~~~~~l~~~L~el~RvLKP--GG~LiI~~ 419 (467)
++.+++.++.+ + .+.+.++|+.+++. +.+||+|+++.... .+.+...+..+..++.++||+ ||.+++.+
T Consensus 266 d~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 266 DEESIDIARENAEIAGVDEYIEFNVGDATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp CHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 78888777643 4 37889999988876 45899999987762 233334456777788888877 88888865
Q ss_pred c
Q 012235 420 F 420 (467)
Q Consensus 420 ~ 420 (467)
.
T Consensus 345 ~ 345 (385)
T 3ldu_A 345 S 345 (385)
T ss_dssp S
T ss_pred C
Confidence 3
No 263
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.25 E-value=8.1e-06 Score=81.69 Aligned_cols=128 Identities=14% Similarity=-0.026 Sum_probs=84.0
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHHc----C--CccEEEccCCCCcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIALR----G--LIPLYVTLNQRLPF 375 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~r----g--~i~~~~~d~~~Lpf 375 (467)
..+..++...++. +|||+|||+|..+..+++. ...|++ +|+++.+++.+.++ + .+.++++|+..++.
T Consensus 92 ~l~~~~l~~~~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a--~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~ 167 (309)
T 2b9e_A 92 CLPAMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFA--FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP 167 (309)
T ss_dssp GHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred HHHHHHhCCCCCC--EEEEeCCChhHHHHHHHHHhCCCCEEEE--EeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc
Confidence 3455667777887 9999999999999999875 367888 66677777766543 4 37788888877754
Q ss_pred CC---CccceEEecc------cccc-----c----cc-h-h----hHHHHHHHHHhccCCCcEEEEEecccCCCC-HHHH
Q 012235 376 FD---NTMDLIHTTG------FMDG-----W----LD-M-L----LLDFILFDWDRILRPGGLLWIDRFFCNKKD-LDDY 430 (467)
Q Consensus 376 ~d---~sFDlVis~~------~L~h-----~----~~-~-~----~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-~~~~ 430 (467)
.. ++||.|++.. ++.. | .. + . ....++..+.++|+ ||.++.++.....++ .+.+
T Consensus 168 ~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v 246 (309)
T 2b9e_A 168 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVV 246 (309)
T ss_dssp TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHH
T ss_pred cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHH
Confidence 32 5799999731 1211 1 10 0 0 01346777888887 999998876654433 3355
Q ss_pred HHHHHHc
Q 012235 431 MYMFLQF 437 (467)
Q Consensus 431 ~~~i~~~ 437 (467)
...+++.
T Consensus 247 ~~~l~~~ 253 (309)
T 2b9e_A 247 RDALQQN 253 (309)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 5566554
No 264
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=98.19 E-value=4.8e-06 Score=82.74 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=84.6
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEEecCCCHHHHHHH---HHcC-CccEEEccCCCCccCCCccceEEec
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVSTALNLGAPFNEMI---ALRG-LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gvdiDiS~~~l~~a---~~rg-~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
+.++. +|||+||++|.|+..++++ ++ .|.++++ +..+.... ...+ .+........-..+.++.+|+|+|.
T Consensus 79 ~~~g~--~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl--g~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD 154 (300)
T 3eld_A 79 LRITG--RVLDLGCGRGGWSYYAAAQKEVMSVKGYTL--GIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCD 154 (300)
T ss_dssp CCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECC--CCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCC--EEEEcCCCCCHHHHHHHHhcCCceeeeEEe--ccccccccccccccCCceEEeecCceeeecCCCCcCEEeec
Confidence 34444 8999999999999999986 43 4666444 32110000 0001 1112222222233456789999998
Q ss_pred cccc---cccchhhHHHHHHHHHhccCCC-cEEEEEecccCCCCHHHHHHHHHHcCceeeEEEEc--cCCCCceEEEE
Q 012235 387 GFMD---GWLDMLLLDFILFDWDRILRPG-GLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWAIS--PKSKDEVYLSA 458 (467)
Q Consensus 387 ~~L~---h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~~~--~k~~devyl~a 458 (467)
.+.. +..+......++.-+.++|+|| |.|++-.|-.-..+...+...+++. |..+..... .....|+|+.+
T Consensus 155 ~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~-F~~V~~~KPaSR~~S~E~Y~V~ 231 (300)
T 3eld_A 155 IGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLR-FGGGIVRVPFSRNSTHEMYYIS 231 (300)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHH-HCCEEECCTTSCTTCCCEEEES
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHh-CCcEEEEeCCCCCCChHHeeec
Confidence 8774 1122211123466678999999 9999976654455555777777777 777766544 22456788864
No 265
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=98.18 E-value=2.8e-05 Score=79.75 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=88.0
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~ 392 (467)
+++|. +|||+||++|.++..++++|..|+++| .+ +|...+...+.+.++.+|+..+....+.||+|+|..+..
T Consensus 209 l~~G~--~vlDLGAaPGGWT~~l~~rg~~V~aVD--~~-~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~-- 281 (375)
T 4auk_A 209 LANGM--WAVDLGACPGGWTYQLVKRNMWVYSVD--NG-PMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK-- 281 (375)
T ss_dssp SCTTC--EEEEETCTTCHHHHHHHHTTCEEEEEC--SS-CCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC--
T ss_pred CCCCC--EEEEeCcCCCHHHHHHHHCCCEEEEEE--hh-hcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC--
Confidence 45676 999999999999999999999999955 33 344445555678899999888887778999999998872
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEecccCCCC-------HHHHHHHHHHcCcee-eEEEEccCCCCceEEEEEeecCC
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD-------LDDYMYMFLQFRYKK-HKWAISPKSKDEVYLSALLEKPP 464 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~-------~~~~~~~i~~~Gf~~-l~W~~~~k~~devyl~avlqKP~ 464 (467)
+......+..+..-+..++.++..-+.- +.. .+.+.+.+...|+.. ++......+++|+ +..++||.
T Consensus 282 --p~~~~~l~~~wl~~~~~~~aI~~lKL~m-k~~~~~l~~~~~~i~~~l~~~g~~~~l~akhL~hdReEi--TV~~rk~~ 356 (375)
T 4auk_A 282 --PAKVAALMAQWLVNGWCRETIFNLKLPM-KKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEV--TVHVRRIW 356 (375)
T ss_dssp --HHHHHHHHHHHHHTTSCSEEEEEEECCS-SSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCSSEE--EEEEEECC
T ss_pred --hHHhHHHHHHHHhccccceEEEEEEecc-cchHHHHHHHHHHHHHHHHhcCcchhheehhhccCCcEE--EEEEEech
Confidence 2112234444444444445544333322 111 123444556666643 2222222245555 44678874
Q ss_pred C
Q 012235 465 R 465 (467)
Q Consensus 465 ~ 465 (467)
.
T Consensus 357 a 357 (375)
T 4auk_A 357 A 357 (375)
T ss_dssp C
T ss_pred h
Confidence 3
No 266
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.17 E-value=6.7e-06 Score=79.71 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc--CCccEEEccCCCCccCCCc-cce
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLPFFDNT-MDL 382 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lpf~d~s-FDl 382 (467)
|.+.+.+.++. +|||||||+|.++..+++++ ..|++ +|+++.+++.+.++ ..+.++++|+..+++++.. ...
T Consensus 23 iv~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~~v~a--vEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 23 IAEELNIEEGN--TVVEVGGGTGNLTKVLLQHPLKKLYV--IELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp HHHHTTCCTTC--EEEEEESCHHHHHHHHTTSCCSEEEE--ECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred HHHhcCCCCcC--EEEEEcCchHHHHHHHHHcCCCeEEE--EECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence 34445555565 89999999999999999995 88988 77788899888766 2368999999998876421 225
Q ss_pred EEecccccccc
Q 012235 383 IHTTGFMDGWL 393 (467)
Q Consensus 383 Vis~~~L~h~~ 393 (467)
|+++... +..
T Consensus 99 vv~NlPy-~i~ 108 (249)
T 3ftd_A 99 VVGNLPY-NVA 108 (249)
T ss_dssp EEEECCT-TTH
T ss_pred EEEECch-hcc
Confidence 6666554 443
No 267
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.14 E-value=3.7e-06 Score=83.07 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE----EEEEecCCCHHHHHHHHHc--CCccEEEccCCCCccCCC--
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT----IVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLPFFDN-- 378 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~----V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lpf~d~-- 378 (467)
|.+.+.+.++. +|||||||+|.++..|++++.. |++ +|+++.+++.+.++ ..+.++++|+..+++++-
T Consensus 34 iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~~~~~V~a--vDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 34 IVAAIRPERGE--RMVEIGPGLGALTGPVIARLATPGSPLHA--VELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHCCCTTC--EEEEECCTTSTTHHHHHHHHCBTTBCEEE--EECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHhcCCCCcC--EEEEEccccHHHHHHHHHhCCCcCCeEEE--EECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 44555666666 8999999999999999998776 888 66778898888765 458899999998886532
Q ss_pred ----ccceEEecccc
Q 012235 379 ----TMDLIHTTGFM 389 (467)
Q Consensus 379 ----sFDlVis~~~L 389 (467)
..+.|+++...
T Consensus 110 ~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPY 124 (279)
T ss_dssp SSSSCCEEEEEECCH
T ss_pred cccCCceEEEEccCc
Confidence 23467777655
No 268
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.10 E-value=3.4e-06 Score=82.22 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCH-------HHHHHHHHc-------CCccEEEccCCC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGA-------PFNEMIALR-------GLIPLYVTLNQR 372 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~-------~~l~~a~~r-------g~i~~~~~d~~~ 372 (467)
+...+...++. +|||+|||+|.++..+++.+..|++ +|+++ .+++.+.++ +.+.++++|+..
T Consensus 75 l~~a~~~~~~~--~VLDlgcG~G~~a~~lA~~g~~V~~--vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~ 150 (258)
T 2r6z_A 75 IAKAVNHTAHP--TVWDATAGLGRDSFVLASLGLTVTA--FEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE 150 (258)
T ss_dssp HHHHTTGGGCC--CEEETTCTTCHHHHHHHHTTCCEEE--EECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH
T ss_pred HHHHhCcCCcC--eEEEeeCccCHHHHHHHHhCCEEEE--EECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH
Confidence 34444444444 8999999999999999999989998 66777 777766542 237899999876
Q ss_pred C-c-cCC--CccceEEeccccc
Q 012235 373 L-P-FFD--NTMDLIHTTGFMD 390 (467)
Q Consensus 373 L-p-f~d--~sFDlVis~~~L~ 390 (467)
+ + +++ ++||+|+++..+.
T Consensus 151 ~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 151 QMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHhhhccCCCccEEEECCCCC
Confidence 4 3 444 7899999987653
No 269
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.05 E-value=2.5e-05 Score=80.55 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=65.2
Q ss_pred ceEEEECCCccHHHHHHhhC-----------------CCEEEEEecCCC-----------HHHHHHHHH-cCC---ccEE
Q 012235 319 RIGLDFGVGTGTFAARMREQ-----------------NVTIVSTALNLG-----------APFNEMIAL-RGL---IPLY 366 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-----------------g~~V~gvdiDiS-----------~~~l~~a~~-rg~---i~~~ 366 (467)
-+|+|+||++|..+..+... ...+..+--|+. +.+.+.+.+ .+. .-++
T Consensus 54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~ 133 (384)
T 2efj_A 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLI 133 (384)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEE
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEE
Confidence 37999999999888776543 122333224443 222222222 221 2344
Q ss_pred Ecc---CCCCccCCCccceEEeccccccccchh--h-----------------------------------HHHHHHHHH
Q 012235 367 VTL---NQRLPFFDNTMDLIHTTGFMDGWLDML--L-----------------------------------LDFILFDWD 406 (467)
Q Consensus 367 ~~d---~~~Lpf~d~sFDlVis~~~L~h~~~~~--~-----------------------------------l~~~L~el~ 406 (467)
.+. ...-.|++++||+|+|+.+| ||.... . +..+|.-..
T Consensus 134 ~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 134 GAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 33446889999999999999 996431 1 112256668
Q ss_pred hccCCCcEEEEEecccCC
Q 012235 407 RILRPGGLLWIDRFFCNK 424 (467)
Q Consensus 407 RvLKPGG~LiI~~~~~~~ 424 (467)
+.|+|||.+++.......
T Consensus 213 ~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 213 EELISRGRMLLTFICKED 230 (384)
T ss_dssp HHEEEEEEEEEEEECCCT
T ss_pred HHhccCCeEEEEEecCCC
Confidence 999999999998765433
No 270
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=98.03 E-value=7.8e-06 Score=79.78 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=79.8
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhC-CC-EEEEE--ecCCCHHHHHHHHH-cC--CccEEEc-cCCCCccCCCccceEE
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQ-NV-TIVST--ALNLGAPFNEMIAL-RG--LIPLYVT-LNQRLPFFDNTMDLIH 384 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~-g~-~V~gv--diDiS~~~l~~a~~-rg--~i~~~~~-d~~~Lpf~d~sFDlVi 384 (467)
++++. +|||+||+.|.++...+++ ++ .|.|. ++|. +....... .| .+.+.++ |+..++ +..+|+|+
T Consensus 71 ikpg~--~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVL 144 (269)
T 2px2_A 71 VQPIG--KVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--HEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLL 144 (269)
T ss_dssp CCCCE--EEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--SCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEE
T ss_pred CCCCC--EEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--ccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEE
Confidence 56676 9999999999999999987 33 33443 2331 00000000 12 1234446 776643 56899999
Q ss_pred ecccccc---ccchhhHHHHHHHHHhccCCCc-EEEEEecccCCCCHHHHHHHHHHcCceeeEEE--EccCCCCceEEEE
Q 012235 385 TTGFMDG---WLDMLLLDFILFDWDRILRPGG-LLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA--ISPKSKDEVYLSA 458 (467)
Q Consensus 385 s~~~L~h---~~~~~~l~~~L~el~RvLKPGG-~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~--~~~k~~devyl~a 458 (467)
|..+... ..+....-.++.-+.++|+||| .|++-.|....++..++.+.+++. |..++-. ...+...|+|+.+
T Consensus 145 SDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~-F~~vkvk~paSR~~S~E~YlVa 223 (269)
T 2px2_A 145 CDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR-FGGGLVRVPLSRNSNHEMYWVS 223 (269)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH-HCCEEECCTTSCTTCCCEEEET
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH-cCCEEEECCCCCCCCccEEEEe
Confidence 9876631 1111111125666669999999 988877663223333555566655 6666521 1112456788864
No 271
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=97.98 E-value=3.5e-05 Score=78.82 Aligned_cols=105 Identities=16% Similarity=0.039 Sum_probs=67.7
Q ss_pred ceEEEECCCccHHHHHHhhC----------------CCEEEEEecCCCHHHHHHHHHc-C------CccEEEc---cCCC
Q 012235 319 RIGLDFGVGTGTFAARMREQ----------------NVTIVSTALNLGAPFNEMIALR-G------LIPLYVT---LNQR 372 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~----------------g~~V~gvdiDiS~~~l~~a~~r-g------~i~~~~~---d~~~ 372 (467)
-+|+|+||++|..+..+.+. ...+..+--|+..+.-..+.+. . ..-++.+ ....
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 36899999999776655433 1233333355544444433322 1 1123333 4444
Q ss_pred CccCCCccceEEeccccccccch-------------------------------hhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 373 LPFFDNTMDLIHTTGFMDGWLDM-------------------------------LLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 373 Lpf~d~sFDlVis~~~L~h~~~~-------------------------------~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
-.|+++++|+|+|+.++ ||... .++..+|....+.|+|||.+++....
T Consensus 133 rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~g 211 (359)
T 1m6e_X 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred ccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 56889999999999999 99643 12334588889999999999997765
Q ss_pred cCC
Q 012235 422 CNK 424 (467)
Q Consensus 422 ~~~ 424 (467)
...
T Consensus 212 r~~ 214 (359)
T 1m6e_X 212 RRS 214 (359)
T ss_dssp CSS
T ss_pred CCC
Confidence 533
No 272
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=97.97 E-value=1.8e-05 Score=81.46 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=41.6
Q ss_pred CCCCccCCCccceEEeccccccccch------------------------------------hhHHHHHHHHHhccCCCc
Q 012235 370 NQRLPFFDNTMDLIHTTGFMDGWLDM------------------------------------LLLDFILFDWDRILRPGG 413 (467)
Q Consensus 370 ~~~Lpf~d~sFDlVis~~~L~h~~~~------------------------------------~~l~~~L~el~RvLKPGG 413 (467)
...-.|++++||+|+|+.+| ||... .++..+|+..+|.|+|||
T Consensus 141 Fy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG 219 (374)
T 3b5i_A 141 FYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGG 219 (374)
T ss_dssp TTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred hhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33345789999999999999 99751 134567889999999999
Q ss_pred EEEEEecccC
Q 012235 414 LLWIDRFFCN 423 (467)
Q Consensus 414 ~LiI~~~~~~ 423 (467)
.+++......
T Consensus 220 ~mvl~~~gr~ 229 (374)
T 3b5i_A 220 AMFLVCLGRT 229 (374)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEecCC
Confidence 9999876553
No 273
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.93 E-value=1.3e-05 Score=78.40 Aligned_cols=103 Identities=10% Similarity=-0.049 Sum_probs=66.3
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHH-------HHHHHHc--------CCccEEEcc
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPF-------NEMIALR--------GLIPLYVTL 369 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~-------l~~a~~r--------g~i~~~~~d 369 (467)
..+.+.+.+.++...+|||+|||+|..+..++.+|..|++ +|.++.+ ++.+..+ ..+.++++|
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~--vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRM--LERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEE--EECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEE--EECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 3455666666661128999999999999999999889999 5555643 3332211 237788998
Q ss_pred CCC-CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCc
Q 012235 370 NQR-LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGG 413 (467)
Q Consensus 370 ~~~-Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG 413 (467)
... ++....+||+|++...+ +.... ..++.+..++|++.|
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y-~~~~~---saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMF-PHKQK---SALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCC-CCCCC--------HHHHHHHHHS
T ss_pred HHHHHHhCcccCCEEEEcCCC-CCccc---chHHHHHHHHHHHhh
Confidence 765 34333479999998777 33332 245666777777755
No 274
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.93 E-value=9.6e-06 Score=80.99 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=61.3
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----CCccEEEccCCCCcc--CC
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----GLIPLYVTLNQRLPF--FD 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----g~i~~~~~d~~~Lpf--~d 377 (467)
+.+.+.+.++. +|||+|||+|.++..++++ +..|++ +|.++.|++.+.++ ..+.++++|+..++. ..
T Consensus 18 ~l~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~~~~Vig--vD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 18 VIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIG--IDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEE--EESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 44566676766 8999999999999999987 478888 77788999888754 347899999888752 21
Q ss_pred ---CccceEEecccc
Q 012235 378 ---NTMDLIHTTGFM 389 (467)
Q Consensus 378 ---~sFDlVis~~~L 389 (467)
++||.|++....
T Consensus 94 ~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 94 LGIEKVDGILMDLGV 108 (301)
T ss_dssp TTCSCEEEEEEECSC
T ss_pred cCCCCCCEEEEcCcc
Confidence 589999986543
No 275
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.90 E-value=2.4e-05 Score=84.05 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=76.0
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC----C----------------CEEEEEecCCCHHHHHHHHHc----C
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ----N----------------VTIVSTALNLGAPFNEMIALR----G 361 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----g----------------~~V~gvdiDiS~~~l~~a~~r----g 361 (467)
.+.+++...++. +|||.|||+|.+...+++. + ..++| +|+++.+.+.++.+ +
T Consensus 160 ~mv~~l~p~~~~--~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~G--iEid~~~~~lA~~nl~l~g 235 (541)
T 2ar0_A 160 TIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIG--LELVPGTRRLALMNCLLHD 235 (541)
T ss_dssp HHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEE--EESCHHHHHHHHHHHHTTT
T ss_pred HHHHHhccCCCC--eEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEE--EcCCHHHHHHHHHHHHHhC
Confidence 344555555554 8999999999998777653 1 36888 55566666665432 3
Q ss_pred C-------ccEEEccCCCCc-cCCCccceEEeccccccccc-----------hhhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 362 L-------IPLYVTLNQRLP-FFDNTMDLIHTTGFMDGWLD-----------MLLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 362 ~-------i~~~~~d~~~Lp-f~d~sFDlVis~~~L~h~~~-----------~~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
. +.+.++|....+ ...+.||+|+++..+..... ...-..++..+.+.|||||++.+..+.
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 1 568888876544 44578999999876632211 111136889999999999999887653
No 276
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.90 E-value=9.2e-06 Score=83.53 Aligned_cols=91 Identities=18% Similarity=0.058 Sum_probs=66.7
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH----c---------------CC--ccEEEccCCCCcc-
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL----R---------------GL--IPLYVTLNQRLPF- 375 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~----r---------------g~--i~~~~~d~~~Lpf- 375 (467)
+|||+|||+|.++..++++ +..|++ +|+++.+++.+++ . +. +.++++|+..+..
T Consensus 50 ~VLDl~aGtG~~~l~~a~~~~~~~V~a--vDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 50 IVLDALSATGIRGIRFALETPAEEVWL--NDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp EEEESSCTTSHHHHHHHHHSSCSEEEE--EESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred EEEECCCchhHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 8999999999999999987 357888 6666777666643 3 32 6678888765532
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.||+|+..- . ... ..++..+.+.|||||.++++.
T Consensus 128 ~~~~fD~I~lDP-~---~~~---~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP-F---GSP---MEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC-S---SCC---HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC-C---CCH---HHHHHHHHHhcCCCCEEEEEe
Confidence 246799999653 2 111 368899999999999888753
No 277
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.87 E-value=1.7e-05 Score=77.14 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=58.1
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCE--EEEEecCCCHHHHHHHHHcC----CccEEEccCCCCccCC---
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQNVT--IVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLPFFD--- 377 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~--V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lpf~d--- 377 (467)
+.+.+.+.++. +|||||||+|.++. +. ++.. |++ +|+++.|++.++++- .+.++++|+..+++++
T Consensus 13 iv~~~~~~~~~--~VLEIG~G~G~lt~-l~-~~~~~~v~a--vEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 13 IVSAINPQKGQ--AMVEIGPGLAALTE-PV-GERLDQLTV--IELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHCCCTTC--CEEEECCTTTTTHH-HH-HTTCSCEEE--ECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHhcCCCCcC--EEEEECCCCcHHHH-hh-hCCCCeEEE--EECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 44455666666 89999999999999 65 4566 888 778899999887652 4789999998887643
Q ss_pred --CccceEEecccc
Q 012235 378 --NTMDLIHTTGFM 389 (467)
Q Consensus 378 --~sFDlVis~~~L 389 (467)
+..|.|+++...
T Consensus 87 ~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 87 KMGQPLRVFGNLPY 100 (252)
T ss_dssp HHTSCEEEEEECCT
T ss_pred ccCCceEEEECCCC
Confidence 234688888765
No 278
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.86 E-value=3.7e-05 Score=85.07 Aligned_cols=109 Identities=15% Similarity=-0.018 Sum_probs=71.1
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhCC--------------------------------------------CEE
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQN--------------------------------------------VTI 342 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g--------------------------------------------~~V 342 (467)
+..+....++. .+||.+||+|+++..++..+ ..+
T Consensus 182 ll~~~~~~~~~--~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i 259 (703)
T 3v97_A 182 IVMRSGWQPGT--PLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHF 259 (703)
T ss_dssp HHHHTTCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred HHHhhCCCCCC--eEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccE
Confidence 33444455554 89999999999987766431 467
Q ss_pred EEEecCCCHHHHHHHHHc----CC---ccEEEccCCCCc--cCCCccceEEeccccc-cccchhhHHHHHH---HHHhcc
Q 012235 343 VSTALNLGAPFNEMIALR----GL---IPLYVTLNQRLP--FFDNTMDLIHTTGFMD-GWLDMLLLDFILF---DWDRIL 409 (467)
Q Consensus 343 ~gvdiDiS~~~l~~a~~r----g~---i~~~~~d~~~Lp--f~d~sFDlVis~~~L~-h~~~~~~l~~~L~---el~RvL 409 (467)
+| .|+++.+++.++.+ |. +.+.++|+..+. ..+++||+|+++-..- .+.+...+..+.. ++.+.+
T Consensus 260 ~G--~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 260 YG--SDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp EE--EESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred EE--EECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 88 66667787776543 43 688999988874 3344899999996542 2222223344444 444555
Q ss_pred CCCcEEEEEe
Q 012235 410 RPGGLLWIDR 419 (467)
Q Consensus 410 KPGG~LiI~~ 419 (467)
.|||.+++.+
T Consensus 338 ~~g~~~~ilt 347 (703)
T 3v97_A 338 FGGWNLSLFS 347 (703)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCeEEEEe
Confidence 6899998865
No 279
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.79 E-value=2.8e-05 Score=80.41 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=67.1
Q ss_pred eEEEECCCccHHHHHHhhC--C-CEEEEEecCCCHHHHHHHHH----cCC----ccEEEccCCCCc--cCCCccceEEec
Q 012235 320 IGLDFGVGTGTFAARMREQ--N-VTIVSTALNLGAPFNEMIAL----RGL----IPLYVTLNQRLP--FFDNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g-~~V~gvdiDiS~~~l~~a~~----rg~----i~~~~~d~~~Lp--f~d~sFDlVis~ 386 (467)
+|||++||+|.++..++.+ | ..|++ +|+++.+++.+.+ .+. +.++.+|+..+- ...+.||+|+..
T Consensus 55 ~VLDlfaGtG~~sl~aa~~~~ga~~V~a--vDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 55 KVADPLSASGIRAIRFLLETSCVEKAYA--NDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp EEEESSCTTSHHHHHHHHHCSCEEEEEE--ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred EEEECCCcccHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 8999999999999999985 4 46777 7777877776654 232 567778865432 224689999987
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
- . ... ..++..+.+.|+|||.++++.
T Consensus 133 P-~---g~~---~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P-F---GTP---VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C-S---SCC---HHHHHHHHHHEEEEEEEEEEE
T ss_pred C-C---cCH---HHHHHHHHHHhCCCCEEEEEe
Confidence 6 2 111 358889999999999888754
No 280
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.79 E-value=6.2e-05 Score=82.26 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred ceEEEECCCccHH---HHHHhhC-CC--EEEEEecCCCHHH---HHHHHHcC---CccEEEccCCCCccCCCccceEEec
Q 012235 319 RIGLDFGVGTGTF---AARMREQ-NV--TIVSTALNLGAPF---NEMIALRG---LIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 319 r~VLDIGCGtG~~---a~~La~~-g~--~V~gvdiDiS~~~---l~~a~~rg---~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
.+|||+|||+|.+ +...+++ +. +|++ ++.++.+ ++..+.++ .|++++++++++..+ +.+|+|+|-
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyA--VEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYA--VEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEE--EESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEE--EECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 4799999999977 4444444 34 4566 5555422 22223334 389999999998764 789999995
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~L 415 (467)
..= .+...+.+...+....|.|||||.+
T Consensus 436 wMG-~fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 436 LLG-SFADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp CCB-TTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred cCc-ccccccCCHHHHHHHHHhcCCCcEE
Confidence 433 2222333457888899999999986
No 281
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.75 E-value=4.3e-05 Score=84.04 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=65.2
Q ss_pred ceEEEECCCccHHHHH---Hhh-CC-----------CEEEEEecCCCHHHHHHH---HHcC---CccEEEccCCCCccC-
Q 012235 319 RIGLDFGVGTGTFAAR---MRE-QN-----------VTIVSTALNLGAPFNEMI---ALRG---LIPLYVTLNQRLPFF- 376 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~---La~-~g-----------~~V~gvdiDiS~~~l~~a---~~rg---~i~~~~~d~~~Lpf~- 376 (467)
.+|||+|||+|.++.. .++ .+ ..|++ ++.++.+...+ ..++ .|.++.++++++..+
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA--VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI--VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE--EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE--EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc
Confidence 4799999999988532 221 12 36777 55555433222 2233 489999999998774
Q ss_pred ----CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 377 ----DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 377 ----d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
.+..|+|+|-..- .+...+.....|..+.|.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmG-sfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLG-SFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCB-TTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccc-cccchhccHHHHHHHHHhCCCCcEEE
Confidence 6889999996653 34444445678888899999999863
No 282
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.69 E-value=8.8e-05 Score=72.31 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=72.4
Q ss_pred ceEEEECCCccHHHHHHhhC-------C-------CEEEEEecCC-CHHHHHHH-----------HH-------------
Q 012235 319 RIGLDFGVGTGTFAARMREQ-------N-------VTIVSTALNL-GAPFNEMI-----------AL------------- 359 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-------g-------~~V~gvdiDi-S~~~l~~a-----------~~------------- 359 (467)
.+|||||+|+|..+..+++. + ..+++++.+. +.+.++.+ ..
T Consensus 62 ~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~ 141 (257)
T 2qy6_A 62 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 141 (257)
T ss_dssp EEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEE
T ss_pred CEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchh
Confidence 48999999999877665432 1 4678877663 33333322 11
Q ss_pred -----cC--CccEEEccCCC-CccCCC----ccceEEecc-ccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCC
Q 012235 360 -----RG--LIPLYVTLNQR-LPFFDN----TMDLIHTTG-FMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKD 426 (467)
Q Consensus 360 -----rg--~i~~~~~d~~~-Lpf~d~----sFDlVis~~-~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~ 426 (467)
.+ .+.++.+|+.. ++..+. .||+|+... +...-++- -...++.++.|+|||||+|+. |...
T Consensus 142 r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~l-w~~~~l~~l~~~L~pGG~l~t--ysaa--- 215 (257)
T 2qy6_A 142 RLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDM-WTQNLFNAMARLARPGGTLAT--FTSA--- 215 (257)
T ss_dssp EEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGG-CCHHHHHHHHHHEEEEEEEEE--SCCB---
T ss_pred heeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhh-cCHHHHHHHHHHcCCCcEEEE--EeCC---
Confidence 11 14577788655 443332 799999853 22111110 014699999999999999874 3322
Q ss_pred HHHHHHHHHHcCceee
Q 012235 427 LDDYMYMFLQFRYKKH 442 (467)
Q Consensus 427 ~~~~~~~i~~~Gf~~l 442 (467)
..+...+...||...
T Consensus 216 -~~vrr~L~~aGF~v~ 230 (257)
T 2qy6_A 216 -GFVRRGLQEAGFTMQ 230 (257)
T ss_dssp -HHHHHHHHHHTEEEE
T ss_pred -HHHHHHHHHCCCEEE
Confidence 257778888899854
No 283
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.65 E-value=4.2e-05 Score=79.56 Aligned_cols=67 Identities=9% Similarity=-0.049 Sum_probs=53.8
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------CC--ccEEEccCCCC-cc-CCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR------GL--IPLYVTLNQRL-PF-FDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------g~--i~~~~~d~~~L-pf-~d~sFDlVis~~~ 388 (467)
+|||+|||+|..+..+++.+..|++ +|+++.+++.++.+ +. +.++++|+..+ +. .+++||+|++.-.
T Consensus 96 ~VLDLgcG~G~~al~LA~~g~~V~~--VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP 172 (410)
T 3ll7_A 96 KVVDLTGGLGIDFIALMSKASQGIY--IERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172 (410)
T ss_dssp EEEESSCSSSHHHHHHHTTCSEEEE--EESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred EEEEeCCCchHHHHHHHhcCCEEEE--EECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence 8999999999999999999999999 67778888777543 43 78999998764 32 3468999998643
No 284
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=97.61 E-value=0.00046 Score=70.52 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=84.7
Q ss_pred hHHHHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHH----cC--------CccEEEc
Q 012235 303 VDFLISDILAIKPGETRIGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIAL----RG--------LIPLYVT 368 (467)
Q Consensus 303 ~d~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~----rg--------~i~~~~~ 368 (467)
.......+++.++|+ +|||+.+|.|+=+..|++.+. .+++ .|+++.-++.+.+ .+ .+.+...
T Consensus 136 aS~l~~~~L~~~pg~--~VLD~CAaPGGKT~~la~~~~~~~l~A--~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~ 211 (359)
T 4fzv_A 136 ASLLPVLALGLQPGD--IVLDLCAAPGGKTLALLQTGCCRNLAA--NDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSW 211 (359)
T ss_dssp GGHHHHHHHCCCTTE--EEEESSCTTCHHHHHHHHTTCEEEEEE--ECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECC
T ss_pred HHHHHHHHhCCCCCC--EEEEecCCccHHHHHHHHhcCCCcEEE--EcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeC
Confidence 334556678888888 999999999999999998855 4555 6777655544432 11 2456666
Q ss_pred cCCCCc-cCCCccceEEec----c---ccc--------cccch------hhHHHHHHHHHhccCCCcEEEEEecccCCCC
Q 012235 369 LNQRLP-FFDNTMDLIHTT----G---FMD--------GWLDM------LLLDFILFDWDRILRPGGLLWIDRFFCNKKD 426 (467)
Q Consensus 369 d~~~Lp-f~d~sFDlVis~----~---~L~--------h~~~~------~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~ 426 (467)
|...++ ...+.||.|+.. . ... .+... ..-..+|....+.|||||+++.++.....++
T Consensus 212 D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~E 291 (359)
T 4fzv_A 212 DGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQ 291 (359)
T ss_dssp CGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTT
T ss_pred chhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhh
Confidence 776664 456789999952 2 110 11110 0113678889999999999999987776554
Q ss_pred HH-HHHHHHH
Q 012235 427 LD-DYMYMFL 435 (467)
Q Consensus 427 ~~-~~~~~i~ 435 (467)
.+ .+...++
T Consensus 292 NE~vV~~~L~ 301 (359)
T 4fzv_A 292 NEYVVQGAIE 301 (359)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 44 4444443
No 285
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.58 E-value=0.00062 Score=67.76 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=78.8
Q ss_pred CceEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHc-----------CCccEEEccCCCC-ccCCCccceE
Q 012235 318 TRIGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALR-----------GLIPLYVTLNQRL-PFFDNTMDLI 383 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~r-----------g~i~~~~~d~~~L-pf~d~sFDlV 383 (467)
.++||=||.|.|..++.+.+. ...|+.++ +.+..++.+++- ..+.++.+|+..+ .-..++||+|
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VE--ID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVE--IDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTTCCEEEEEE--SCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCeEEEECCCchHHHHHHHHcCCcceEEEEc--CCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 458999999999999999987 34677744 446666655431 2377889987665 3456789999
Q ss_pred Eecccc-----ccccchhhHHHHHHHHHhccCCCcEEEEE--ecccCCCCHHHHHHHHHHcCceee
Q 012235 384 HTTGFM-----DGWLDMLLLDFILFDWDRILRPGGLLWID--RFFCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 384 is~~~L-----~h~~~~~~l~~~L~el~RvLKPGG~LiI~--~~~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
+....= .+... ..+++.+.++|+|||.++.. .++...+......+.+++. |..+
T Consensus 162 i~D~~dp~~~~~~L~t----~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~v 222 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFT----SAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDV 222 (294)
T ss_dssp EESCCCCCCTTCCSSC----CHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH-CSEE
T ss_pred EEeCCCcCCCchhhcC----HHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh-CCce
Confidence 975421 11122 36899999999999999884 3333333333445555555 4433
No 286
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.53 E-value=0.00047 Score=65.01 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=61.7
Q ss_pred ceEEEECCCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHH----HcC-----CccEEEccCCC---------------C
Q 012235 319 RIGLDFGVGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIA----LRG-----LIPLYVTLNQR---------------L 373 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~----~rg-----~i~~~~~d~~~---------------L 373 (467)
++|||+||| +-+..+++. +.+|++++ .++...+.++ +.+ .+.++.+++.. +
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE--~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVE--SDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEE--SCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEe--CCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 389999985 677777776 67888844 4555555543 334 27788888543 2
Q ss_pred c--------c-CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 374 P--------F-FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 374 p--------f-~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+ . ..++||+|+...-.. ...+..+.+.|+|||.+++++.
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHHHHHHCSSCEEEEETTG
T ss_pred HHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHHHHHhcCCCeEEEEeCC
Confidence 2 1 137899999887541 2456667799999999988764
No 287
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.51 E-value=0.00015 Score=77.85 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=78.5
Q ss_pred HHHHhcCCCCCCceEEEECCCccHHHHHHhhC-----------------CCEEEEEecCCCHHHHHHHHH----cCC---
Q 012235 307 ISDILAIKPGETRIGLDFGVGTGTFAARMREQ-----------------NVTIVSTALNLGAPFNEMIAL----RGL--- 362 (467)
Q Consensus 307 I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----------------g~~V~gvdiDiS~~~l~~a~~----rg~--- 362 (467)
+.+++...++ +|||.+||+|.+...+++. ...++| +|+.+.+.+.++. .+.
T Consensus 237 mv~ll~p~~~---~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G--~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 237 IVEMLEPYKG---RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYG--QESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHCCCSE---EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEE--CCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHhcCCC---eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEE--EeCCHHHHHHHHHHHHHhCCCcc
Confidence 4444444332 8999999999988776432 345666 7777777776653 232
Q ss_pred ccEEEccCCCCc-cCCCccceEEecccccc--ccch-----------------------h-hHHHHHHHHHhccCCCcEE
Q 012235 363 IPLYVTLNQRLP-FFDNTMDLIHTTGFMDG--WLDM-----------------------L-LLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 363 i~~~~~d~~~Lp-f~d~sFDlVis~~~L~h--~~~~-----------------------~-~l~~~L~el~RvLKPGG~L 415 (467)
+.+.++|....+ +.+..||+|+++-.+.. |... . .--.++..+.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 233667755444 45678999999876632 2110 0 0015788999999999999
Q ss_pred EEEeccc---CC-CCHHHHHHHHHHc
Q 012235 416 WIDRFFC---NK-KDLDDYMYMFLQF 437 (467)
Q Consensus 416 iI~~~~~---~~-~~~~~~~~~i~~~ 437 (467)
.+..+.. .. .....+.+.+-+-
T Consensus 392 aiVlP~g~L~~~~~~~~~iRk~Lle~ 417 (544)
T 3khk_A 392 ALLLANGSMSSNTNNEGEIRKTLVEQ 417 (544)
T ss_dssp EEEEETHHHHCCGGGHHHHHHHHHHT
T ss_pred EEEecchhhhcCcchHHHHHHHHHhC
Confidence 8876432 12 1233566655544
No 288
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.50 E-value=0.00017 Score=71.74 Aligned_cols=122 Identities=12% Similarity=0.004 Sum_probs=72.7
Q ss_pred hcCCCCCCceEEEECCCccHHHHHHhhC-CCE-EEEEecCCCH---HHHHHHHHcCCccEEEc-cCCCCccCCCccceEE
Q 012235 311 LAIKPGETRIGLDFGVGTGTFAARMREQ-NVT-IVSTALNLGA---PFNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIH 384 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~-V~gvdiDiS~---~~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVi 384 (467)
..++++. +|||+||++|.|+...+.. |+. |+++|+-... +++-+-..-.++.+..+ |+..++. ..+|+|+
T Consensus 90 ~~l~~~~--~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~iv 165 (321)
T 3lkz_A 90 RFLEPVG--KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLL 165 (321)
T ss_dssp TSCCCCE--EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEE
T ss_pred cCCCCCC--EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEE
Confidence 4466676 9999999999999977766 654 7785553221 00000000012566666 6666654 6699999
Q ss_pred eccccc---cccchhhHHHHHHHHHhccCCC-cEEEEEecccCCCCHHHHHHHHHH
Q 012235 385 TTGFMD---GWLDMLLLDFILFDWDRILRPG-GLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 385 s~~~L~---h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
|.-.=. .+.+......+|.-+.+.|++| |.|++-.+.....+..++.+.+++
T Consensus 166 cDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~ 221 (321)
T 3lkz_A 166 CDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQR 221 (321)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred EECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHH
Confidence 976521 1122211123667778999999 999886655544444344444443
No 289
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.42 E-value=0.00029 Score=68.04 Aligned_cols=120 Identities=12% Similarity=-0.033 Sum_probs=72.5
Q ss_pred cCCCCCCceEEEECCCccHHHHHHhhC-CCE-EEEEecCCCHH---HHHHHHHcCCccEEEc-cCCCCccCCCccceEEe
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMREQ-NVT-IVSTALNLGAP---FNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La~~-g~~-V~gvdiDiS~~---~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVis 385 (467)
.++++. +|||+||++|.|+...+.. |+. |+++|+-.... ++-+..--+.+.|..+ |...++- ..+|.|+|
T Consensus 75 ~l~~g~--~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~Dtllc 150 (267)
T 3p8z_A 75 MVIPEG--RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLC 150 (267)
T ss_dssp SSCCCE--EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEE
T ss_pred CCCCCC--EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEE
Confidence 566776 9999999999999977766 544 77755432211 1100001123778887 7666653 67999999
Q ss_pred cccccccc---chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 386 TGFMDGWL---DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 386 ~~~L~h~~---~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
...-..-. +......+|+-+.+.|++ |.|++-.+.....+..++.+.+++
T Consensus 151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~ 203 (267)
T 3p8z_A 151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQR 203 (267)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHH
T ss_pred ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHH
Confidence 77653222 221112366777899999 788885554444333344444443
No 290
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.40 E-value=0.00039 Score=74.70 Aligned_cols=116 Identities=13% Similarity=0.049 Sum_probs=74.8
Q ss_pred eEEEECCCccHHHHHHhhC-----CCEEEEEecCCCHHHHHHHHH----cCC----ccEEEccCCCC--c-cCCCccceE
Q 012235 320 IGLDFGVGTGTFAARMREQ-----NVTIVSTALNLGAPFNEMIAL----RGL----IPLYVTLNQRL--P-FFDNTMDLI 383 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-----g~~V~gvdiDiS~~~l~~a~~----rg~----i~~~~~d~~~L--p-f~d~sFDlV 383 (467)
+|||.+||+|.+...+++. ...++|+ |+.+.+...++. .+. +.+.++|.... | .....||+|
T Consensus 224 ~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~--Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~I 301 (542)
T 3lkd_A 224 TLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ--ELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGV 301 (542)
T ss_dssp EEEETTCTTSTTGGGHHHHCSCTTTCEEEEE--ESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEE
T ss_pred EEeecccchhHHHHHHHHHHHhccCceEEEE--ECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEE
Confidence 8999999999988777665 5678884 455555555543 332 45788887655 4 456789999
Q ss_pred Eeccccc-cccch------------------h-hHHHHHHHHHhccC-CCcEEEEEeccc--CCCC-HHHHHHHHHHc
Q 012235 384 HTTGFMD-GWLDM------------------L-LLDFILFDWDRILR-PGGLLWIDRFFC--NKKD-LDDYMYMFLQF 437 (467)
Q Consensus 384 is~~~L~-h~~~~------------------~-~l~~~L~el~RvLK-PGG~LiI~~~~~--~~~~-~~~~~~~i~~~ 437 (467)
+++-.+. .|... . .--.++..+.+.|+ |||++.+..+.. .+.. ...+++.+-+-
T Consensus 302 vaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~ 379 (542)
T 3lkd_A 302 LMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEE 379 (542)
T ss_dssp EECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHT
T ss_pred EecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhC
Confidence 9985542 12100 0 00147899999999 999998876543 1222 23555655443
No 291
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.32 E-value=0.00076 Score=60.66 Aligned_cols=84 Identities=14% Similarity=0.020 Sum_probs=58.2
Q ss_pred eEEEECCCcc-HHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCC-CccceEEeccccccccchh
Q 012235 320 IGLDFGVGTG-TFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFD-NTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG-~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d-~sFDlVis~~~L~h~~~~~ 396 (467)
+|||||||.| ..|..|++ .|.+|+++|++..+ +.++.+|+.+..... ..||+|.+.....-
T Consensus 38 rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A-----------v~~v~dDiF~P~~~~Y~~~DLIYsirPP~E----- 101 (153)
T 2k4m_A 38 RVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH-----------GGIVRDDITSPRMEIYRGAALIYSIRPPAE----- 101 (153)
T ss_dssp EEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS-----------TTEECCCSSSCCHHHHTTEEEEEEESCCTT-----
T ss_pred cEEEEccCCChHHHHHHHHhCCCeEEEEECCccc-----------cceEEccCCCCcccccCCcCEEEEcCCCHH-----
Confidence 8999999999 69999997 89999997665432 338888887632211 48999998776521
Q ss_pred hHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 397 LLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
+...+.++.+- -|.-++|..+..
T Consensus 102 -l~~~i~~lA~~--v~adliI~pL~~ 124 (153)
T 2k4m_A 102 -IHSSLMRVADA--VGARLIIKPLTG 124 (153)
T ss_dssp -THHHHHHHHHH--HTCEEEEECBTT
T ss_pred -HHHHHHHHHHH--cCCCEEEEcCCC
Confidence 23455555554 356677755543
No 292
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=97.25 E-value=0.0022 Score=63.85 Aligned_cols=135 Identities=13% Similarity=0.030 Sum_probs=81.7
Q ss_pred CCCCCceEEEECC------CccHHH-HHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 314 KPGETRIGLDFGV------GTGTFA-ARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 314 ~~g~~r~VLDIGC------GtG~~a-~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
..+. +|||+|+ -.|.+. +.+...|..++++|+..-.. ..-.++++|+..+.. .+.||+|+|.
T Consensus 108 p~gm--rVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s--------da~~~IqGD~~~~~~-~~k~DLVISD 176 (344)
T 3r24_A 108 PYNM--RVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS--------DADSTLIGDCATVHT-ANKWDLIISD 176 (344)
T ss_dssp CTTC--EEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC--------SSSEEEESCGGGEEE-SSCEEEEEEC
T ss_pred cCCC--EEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc--------CCCeEEEcccccccc-CCCCCEEEec
Confidence 3455 8999997 567643 23333356788876653110 111358888766443 5889999997
Q ss_pred ccccc--ccc------hhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEEE--EccCCCCceEE
Q 012235 387 GFMDG--WLD------MLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWA--ISPKSKDEVYL 456 (467)
Q Consensus 387 ~~L~h--~~~------~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W~--~~~k~~devyl 456 (467)
.+..- ..+ ..-.+.++.-+.++|+|||.|++-.|-... . +.+.++.+ .|+.++-. ...+...|+|+
T Consensus 177 MAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~-~~L~~lrk--~F~~VK~fK~ASRa~SsEvYL 252 (344)
T 3r24_A 177 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-N-ADLYKLMG--HFSWWTAFVTNVNASSSEAFL 252 (344)
T ss_dssp CCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-C-HHHHHHHT--TEEEEEEEEEGGGTTSSCEEE
T ss_pred CCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-H-HHHHHHHh--hCCeEEEECCCCCCCCeeEEE
Confidence 65521 011 112356677778899999999998776655 2 34545444 36655443 22336678999
Q ss_pred EEEeecC
Q 012235 457 SALLEKP 463 (467)
Q Consensus 457 ~avlqKP 463 (467)
.++=-|.
T Consensus 253 VG~gfKg 259 (344)
T 3r24_A 253 IGANYLG 259 (344)
T ss_dssp EEEEECS
T ss_pred EeeeccC
Confidence 8765543
No 293
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.25 E-value=0.00099 Score=74.43 Aligned_cols=100 Identities=13% Similarity=-0.005 Sum_probs=65.1
Q ss_pred eEEEECCCccHHHHHHhhCC-----CEEEEEecCCCHHHHHHH--HH--------cCC--ccEEEccCCCC-ccCCCccc
Q 012235 320 IGLDFGVGTGTFAARMREQN-----VTIVSTALNLGAPFNEMI--AL--------RGL--IPLYVTLNQRL-PFFDNTMD 381 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g-----~~V~gvdiDiS~~~l~~a--~~--------rg~--i~~~~~d~~~L-pf~d~sFD 381 (467)
+|||.|||+|.++..++++. ..++| .|+++.+++.+ +. .+. ..+...+.... +...+.||
T Consensus 324 rVLDPaCGSG~FLIaaA~~l~ei~~~~IyG--vEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 324 VISDPAAGSGNLLATVSAGFNNVMPRQIWA--NDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp EEEETTCTTSHHHHHHHHTSTTCCGGGEEE--ECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred EEEECCCCccHHHHHHHHHhcccCCCeEEE--EECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 89999999999999988763 36788 55556666655 21 111 12333344332 23457899
Q ss_pred eEEecccccc-ccch-------------------------hhHHHHHHHHHhccCCCcEEEEEecc
Q 012235 382 LIHTTGFMDG-WLDM-------------------------LLLDFILFDWDRILRPGGLLWIDRFF 421 (467)
Q Consensus 382 lVis~~~L~h-~~~~-------------------------~~l~~~L~el~RvLKPGG~LiI~~~~ 421 (467)
+|+++-.... +... .....++..+.+.|+|||++.+..+.
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 9999877622 1111 01234678899999999999887654
No 294
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.01 E-value=0.0031 Score=62.33 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=73.8
Q ss_pred eEEEECCCccHHHHHHhhC-------CCEEEEEecCCC---------------------------HH-HHHHHHHc----
Q 012235 320 IGLDFGVGTGTFAARMREQ-------NVTIVSTALNLG---------------------------AP-FNEMIALR---- 360 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-------g~~V~gvdiDiS---------------------------~~-~l~~a~~r---- 360 (467)
.||++|+..|..+..|++. +.+++++|.... .+ +.+...+.
T Consensus 109 ~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~~ 188 (282)
T 2wk1_A 109 DLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLLD 188 (282)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCCS
T ss_pred cEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCCc
Confidence 7999999999888777542 557888764311 00 11222222
Q ss_pred CCccEEEccCCC-Cc-cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcC
Q 012235 361 GLIPLYVTLNQR-LP-FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFR 438 (467)
Q Consensus 361 g~i~~~~~d~~~-Lp-f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~G 438 (467)
..+.++.+++.+ +| +++++||+|+...-.. .. ....+..+...|+|||+++++++.........+.+..+..|
T Consensus 189 ~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~---~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~ 263 (282)
T 2wk1_A 189 EQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ES---TWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFD 263 (282)
T ss_dssp TTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HH---HHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTT
T ss_pred CceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--cc---HHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 347899998543 44 3357899999876431 11 24689999999999999999887431222225556666655
Q ss_pred c
Q 012235 439 Y 439 (467)
Q Consensus 439 f 439 (467)
.
T Consensus 264 i 264 (282)
T 2wk1_A 264 I 264 (282)
T ss_dssp C
T ss_pred C
Confidence 3
No 295
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.77 E-value=0.0032 Score=62.30 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=58.6
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc--CCccEEEccCCCCcc-----CCC
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLPF-----FDN 378 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lpf-----~d~ 378 (467)
.+.+.+.+.+++ ++||.+||.|..+..+++++..|+| +|.++.+++.+.+- +.+.+++++...++. ..+
T Consensus 13 e~le~L~~~~gg--~~VD~T~G~GGHS~~il~~~g~Vig--iD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~ 88 (285)
T 1wg8_A 13 EALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIG--LDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVE 88 (285)
T ss_dssp HHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEE--EESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHHHhhCCCCCC--EEEEeCCCCcHHHHHHHHCCCEEEE--EeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCC
Confidence 344566777777 8999999999999999998778999 66667777776551 247888998877641 225
Q ss_pred ccceEEec
Q 012235 379 TMDLIHTT 386 (467)
Q Consensus 379 sFDlVis~ 386 (467)
++|.|++.
T Consensus 89 ~vDgIL~D 96 (285)
T 1wg8_A 89 RVDGILAD 96 (285)
T ss_dssp CEEEEEEE
T ss_pred CcCEEEeC
Confidence 79999964
No 296
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=96.74 E-value=0.0062 Score=62.60 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=76.6
Q ss_pred CceEEEECCCccHHHHHHhhCC-CEEEEEecCCCHHHHHHHHHc--------------CCccEEEccCCCCc----cCCC
Q 012235 318 TRIGLDFGVGTGTFAARMREQN-VTIVSTALNLGAPFNEMIALR--------------GLIPLYVTLNQRLP----FFDN 378 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g-~~V~gvdiDiS~~~l~~a~~r--------------g~i~~~~~d~~~Lp----f~d~ 378 (467)
.++||=||.|.|..++.+.+.. ..|+. +++.+..++.+++- ..+.++.+|+..+- -..+
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~~~V~~--VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKPKMVTM--VEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCSEEEE--EESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCeEEEECCCcHHHHHHHHhcCCceeEE--EccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999998864 45666 55667777777652 12456777765431 2356
Q ss_pred ccceEEecccc-------ccccchhhHHHHHHHHHhccCCCcEEEEEec-ccCCCCHHHHHHHHHHcCceee
Q 012235 379 TMDLIHTTGFM-------DGWLDMLLLDFILFDWDRILRPGGLLWIDRF-FCNKKDLDDYMYMFLQFRYKKH 442 (467)
Q Consensus 379 sFDlVis~~~L-------~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~-~~~~~~~~~~~~~i~~~Gf~~l 442 (467)
.||+|+....- .+.....-.+.+++.+.++|+|||.++...- ....+....+.+.+++. |..+
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v-F~~v 354 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL-YCPV 354 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS-SSCE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh-CCcc
Confidence 89999976321 0111111124678899999999999887421 11122233566666666 5444
No 297
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.95 E-value=0.05 Score=58.11 Aligned_cols=111 Identities=21% Similarity=0.198 Sum_probs=68.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---------------CCEEEEEecCCCHHHHHHHHH----cCC--cc
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---------------NVTIVSTALNLGAPFNEMIAL----RGL--IP 364 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---------------g~~V~gvdiDiS~~~l~~a~~----rg~--i~ 364 (467)
.+.+++...++. +|+|-+||+|.|.....++ ...++|.++| +.+...+.- .+. ..
T Consensus 208 lmv~l~~p~~~~--~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~--~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 208 FMVEVMDPQLGE--SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAK--SLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCS--HHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHhhccCCCC--EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhcc--HHHHHHHHHHHHhcCCcccc
Confidence 445566666665 8999999999998766542 2457885544 444444432 332 45
Q ss_pred EEEccCCCCcc----CCCccceEEecccccccc-------------chhhHHHHHHHHHhccC-------CCcEEEEEec
Q 012235 365 LYVTLNQRLPF----FDNTMDLIHTTGFMDGWL-------------DMLLLDFILFDWDRILR-------PGGLLWIDRF 420 (467)
Q Consensus 365 ~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~-------------~~~~l~~~L~el~RvLK-------PGG~LiI~~~ 420 (467)
+..+|....|. ....||+|+++-.+..-. ....--.++..+.+.|| |||++.+..+
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 66777665543 235799999997763110 00111245667777776 7999988765
No 298
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.67 E-value=0.015 Score=57.08 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r 360 (467)
.+++ +|||++||+|+.+..+++.|..++| +|+++.+++.+.++
T Consensus 234 ~~~~--~vlD~f~GsGt~~~~a~~~g~~~~g--~e~~~~~~~~a~~r 276 (297)
T 2zig_A 234 FVGD--VVLDPFAGTGTTLIAAARWGRRALG--VELVPRYAQLAKER 276 (297)
T ss_dssp CTTC--EEEETTCTTTHHHHHHHHTTCEEEE--EESCHHHHHHHHHH
T ss_pred CCCC--EEEECCCCCCHHHHHHHHcCCeEEE--EeCCHHHHHHHHHH
Confidence 4565 8999999999999999999999999 66777887777654
No 299
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=95.37 E-value=0.15 Score=51.23 Aligned_cols=104 Identities=6% Similarity=0.016 Sum_probs=67.9
Q ss_pred CceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHH---HHHHHc-----------------------CCccEEEccCC
Q 012235 318 TRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFN---EMIALR-----------------------GLIPLYVTLNQ 371 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l---~~a~~r-----------------------g~i~~~~~d~~ 371 (467)
.+.|+.+|||..+.+.+|...+..+.-+++|...-+. +.+.+. ....++.+|+.
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~ 177 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 177 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence 3589999999999999998753344455577633211 111221 22456666766
Q ss_pred CCcc---------CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 372 RLPF---------FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 372 ~Lpf---------~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+... ..+...++++-.++ ++.+.+....++..+.+.. |+|.+++.+...+
T Consensus 178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL-~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 178 DITETTRLLDVCTKREIPTIVISECLL-CYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp CHHHHHHHHHTTCCTTSCEEEEEESCG-GGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CcHHHHHHHHhcCCCCCCEEEEEcchh-hCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 5321 23456778888888 7777777788888888877 7888876665554
No 300
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=95.18 E-value=0.054 Score=54.34 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=65.7
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccce
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDl 382 (467)
..+.+++ +||-+|+|. |..+..+++. |. .|++ ++.++..++.+++.|...++.....++ ...++.+|+
T Consensus 186 ~~~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 186 LKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIA--VDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEE--EESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--ECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 4566776 899999886 7788888775 77 6888 555677777777777433333222111 112237999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+-...- ...+.+..+.|+|||.+++...
T Consensus 262 vid~~g~---------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 262 ALESTGS---------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp EEECSCC---------HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEECCCC---------HHHHHHHHHHHhcCCEEEEeCC
Confidence 9866543 2578889999999999987543
No 301
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=95.01 E-value=0.15 Score=51.32 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=81.3
Q ss_pred eEEEECCCccHHHHHHhhCCC--E-EEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCcc---CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV--T-IVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPF---FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~-V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h~ 392 (467)
+|+|+-||.|.++..+.+.|. . |.+ +|+.+.+++....+.. ..++.+|+..+.. +...+|+|+....=..+
T Consensus 4 ~v~dLFaG~Gg~~~g~~~~G~~~~~v~~--~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRESCIPAQVVAA--IDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEE--ECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred eEEEeCcCccHHHHHHHHCCCCceEEEE--EeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 789999999999999998883 3 455 6777888887776643 5677888877642 12268999987541111
Q ss_pred c--------chhhHHHHHH---HHHhccC--CCcEEEEEecc--cCCCCHHHHHHHHHHcCceeeEEEEcc-C------C
Q 012235 393 L--------DMLLLDFILF---DWDRILR--PGGLLWIDRFF--CNKKDLDDYMYMFLQFRYKKHKWAISP-K------S 450 (467)
Q Consensus 393 ~--------~~~~l~~~L~---el~RvLK--PGG~LiI~~~~--~~~~~~~~~~~~i~~~Gf~~l~W~~~~-k------~ 450 (467)
. ++ ....++. ++.+.++ |.-. ++-.-. ......+.+.+.++.+||.. .|.+.. . .
T Consensus 82 S~ag~~~g~~d-~r~~l~~~~~~~i~~~~~~P~~~-~~ENV~~l~~~~~~~~i~~~l~~~GY~v-~~~vl~a~~~GvPQ~ 158 (343)
T 1g55_A 82 TRIGRQGDMTD-SRTNSFLHILDILPRLQKLPKYI-LLENVKGFEVSSTRDLLIQTIENCGFQY-QEFLLSPTSLGIPNS 158 (343)
T ss_dssp ---------------CHHHHHHHHGGGCSSCCSEE-EEEEETTGGGSHHHHHHHHHHHHTTEEE-EEEEECGGGGTCSCC
T ss_pred hhcCCcCCccC-ccchHHHHHHHHHHHhcCCCCEE-EEeCCccccCHHHHHHHHHHHHHCCCee-EEEEEEHHHCCCCCc
Confidence 1 11 0112344 4444555 6643 332111 12233457888889999965 454332 2 4
Q ss_pred CCceEEEEEe
Q 012235 451 KDEVYLSALL 460 (467)
Q Consensus 451 ~devyl~avl 460 (467)
+..+|+.+..
T Consensus 159 R~R~~iv~~~ 168 (343)
T 1g55_A 159 RLRYFLIAKL 168 (343)
T ss_dssp CCEEEEEEEE
T ss_pred ccEEEEEEEe
Confidence 5667777754
No 302
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=94.27 E-value=0.37 Score=48.07 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=53.7
Q ss_pred ccEEEccCCC-Cc-cCCCccceEEecc-cc----ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH
Q 012235 363 IPLYVTLNQR-LP-FFDNTMDLIHTTG-FM----DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL 435 (467)
Q Consensus 363 i~~~~~d~~~-Lp-f~d~sFDlVis~~-~L----~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~ 435 (467)
+.+..+|+.. ++ +.+..||+|+... +. +.|. +.++..++++++|||+|+ +|.... .+...+.
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs-----~e~f~~l~~~~~pgg~la--TYtaag----~VRR~L~ 236 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWT-----LDFLSLIKERIDEKGYWV--SYSSSL----SVRKSLL 236 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGS-----HHHHHHHHTTEEEEEEEE--ESCCCH----HHHHHHH
T ss_pred EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCC-----HHHHHHHHHHhCCCcEEE--EEeCcH----HHHHHHH
Confidence 3466677543 33 3345799999753 22 1232 469999999999999865 455543 6788899
Q ss_pred HcCceeeEEEEccCCCCceEEEEEeecC
Q 012235 436 QFRYKKHKWAISPKSKDEVYLSALLEKP 463 (467)
Q Consensus 436 ~~Gf~~l~W~~~~k~~devyl~avlqKP 463 (467)
..||..-+-. +.-++.+ -+.+.+..|
T Consensus 237 ~aGF~V~k~~-G~g~KRe-ml~A~~~~~ 262 (308)
T 3vyw_A 237 TLGFKVGSSR-EIGRKRK-GTVASLKAP 262 (308)
T ss_dssp HTTCEEEEEE-CC---CE-EEEEESSSC
T ss_pred HCCCEEEecC-CCCCCCc-eeEEecCCC
Confidence 9999865432 2222333 344455444
No 303
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=94.23 E-value=0.086 Score=52.39 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=63.5
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
..+.+++ +||-+|+|. |.++..+++. |.+|+++ +.++..++.+.+.|.-.++ .+...+ ...+|+|+-...
T Consensus 172 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~v~-~~~~~~---~~~~D~vid~~g 243 (348)
T 3two_A 172 SKVTKGT--KVGVAGFGGLGSMAVKYAVAMGAEVSVF--ARNEHKKQDALSMGVKHFY-TDPKQC---KEELDFIISTIP 243 (348)
T ss_dssp TTCCTTC--EEEEESCSHHHHHHHHHHHHTTCEEEEE--CSSSTTHHHHHHTTCSEEE-SSGGGC---CSCEEEEEECCC
T ss_pred cCCCCCC--EEEEECCcHHHHHHHHHHHHCCCeEEEE--eCCHHHHHHHHhcCCCeec-CCHHHH---hcCCCEEEECCC
Confidence 4667777 899999875 7777777765 8898884 5555666777777753333 332222 237999986544
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
- ...+....+.|+|||.+++...
T Consensus 244 ~---------~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 244 T---------HYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp S---------CCCHHHHHTTEEEEEEEEECCC
T ss_pred c---------HHHHHHHHHHHhcCCEEEEECC
Confidence 3 1257788899999999988543
No 304
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=94.13 E-value=0.73 Score=46.89 Aligned_cols=138 Identities=12% Similarity=-0.035 Sum_probs=82.4
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCcc--------CCCccceEEeccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPF--------FDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf--------~d~sFDlVis~~~L~ 390 (467)
+++|+-||.|.++..+.+.|..++. .+|+.+.+.+....+- ...++.+|+..+.. ....+|+|+....=.
T Consensus 4 ~vidLFsG~GGlslG~~~aG~~~v~-avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ 82 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARAGFDVKM-AVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ 82 (376)
T ss_dssp EEEEETCTTSHHHHHHHHHTCEEEE-EECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred eEEEEccCcCHHHHHHHHCCCcEEE-EEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence 6899999999999999999987652 3677777777766653 35677788776642 246799999764311
Q ss_pred cc--------cch-hhHHHHHHHHHhccCCCcEEEEEecccCC-C---CHHHHHHHHHHcCceeeEEEEccC-------C
Q 012235 391 GW--------LDM-LLLDFILFDWDRILRPGGLLWIDRFFCNK-K---DLDDYMYMFLQFRYKKHKWAISPK-------S 450 (467)
Q Consensus 391 h~--------~~~-~~l~~~L~el~RvLKPGG~LiI~~~~~~~-~---~~~~~~~~i~~~Gf~~l~W~~~~k-------~ 450 (467)
.+ .+. ..+-..+.++.+.++|.-.++=....... . ..+.+. .++.+||....|.+..- .
T Consensus 83 ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGvPQ~ 161 (376)
T 3g7u_A 83 GFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAPTI 161 (376)
T ss_dssp TTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTCSBC
T ss_pred CcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCCCCC
Confidence 11 111 11112233455566886443322211111 1 133555 78889998745554332 4
Q ss_pred CCceEEEEE
Q 012235 451 KDEVYLSAL 459 (467)
Q Consensus 451 ~devyl~av 459 (467)
+..+|+.+.
T Consensus 162 R~R~~iig~ 170 (376)
T 3g7u_A 162 RTRYFFIGV 170 (376)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 555677664
No 305
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=94.09 E-value=0.18 Score=50.81 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=67.5
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC--------ccCC
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL--------PFFD 377 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L--------pf~d 377 (467)
....+.+++ +||=+|+|. |.++..+++. |. .|++ ++.++...+.+++.|...++.....++ ...+
T Consensus 176 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~ 251 (370)
T 4ej6_A 176 DLSGIKAGS--TVAILGGGVIGLLTVQLARLAGATTVIL--STRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVP 251 (370)
T ss_dssp HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSST
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccC
Confidence 455677887 889899875 6777777765 87 7887 566777777777777533332221111 0223
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+.+|+|+-...- ...+.+..+.|++||.+++...
T Consensus 252 gg~Dvvid~~G~---------~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 252 GGVDVVIECAGV---------AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp TCEEEEEECSCC---------HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCEEEECCCC---------HHHHHHHHHHhccCCEEEEEec
Confidence 479999975543 2578889999999999988543
No 306
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=94.08 E-value=0.11 Score=46.96 Aligned_cols=95 Identities=20% Similarity=0.115 Sum_probs=57.8
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----c-cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----P-FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----p-f~d~sFD 381 (467)
..+.+++ +||.+|+ |.|..+..++. .|.+|++++ .+++..+.+.+.+....+....... . ...+.+|
T Consensus 34 ~~~~~g~--~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~--~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 34 GRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYTTA--GSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp SCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEEEE--SSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred hCCCCCC--EEEEeeCCChHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 3456666 8999995 44655555554 488988854 4566666665545322221111111 0 1124699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+.+..+.|+|||.+++..
T Consensus 110 ~vi~~~g~----------~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 110 VVLNSLAG----------EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEECCCT----------HHHHHHHHTEEEEEEEEECS
T ss_pred EEEECCch----------HHHHHHHHHhccCCEEEEEc
Confidence 99976432 36788899999999988754
No 307
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=94.06 E-value=0.2 Score=49.96 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=65.1
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEcc---CCCC----c-cCC
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTL---NQRL----P-FFD 377 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---~~~L----p-f~d 377 (467)
....+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|.-.++... ..++ . ...
T Consensus 165 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~ 240 (356)
T 1pl8_A 165 RRGGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVV--TDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG 240 (356)
T ss_dssp HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhC
Confidence 445677777 899999875 7777777764 87 8888 45566667777776643333222 0111 0 011
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+.+|+|+-.-.- ...+.+..++|+|||.+++..
T Consensus 241 ~g~D~vid~~g~---------~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 241 CKPEVTIECTGA---------EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp SCCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEEEECCCC---------hHHHHHHHHHhcCCCEEEEEe
Confidence 569999866543 246788899999999998754
No 308
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=94.03 E-value=0.16 Score=50.56 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=66.4
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
+...+.+++ +||=+|+|. |.++..+++. |. .|++ ++.++..++.+.+.|...++.....++. .....
T Consensus 160 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g 235 (352)
T 3fpc_A 160 ELANIKLGD--TVCVIGIGPVGLMSVAGANHLGAGRIFA--VGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKG 235 (352)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSSEEE--ECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEE--ECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCC
Confidence 455677777 889999875 7778888776 77 7888 5666777778877775333332222211 12346
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-...- ...+.+..+.|+|||.+++..
T Consensus 236 ~D~v~d~~g~---------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 236 VDKVVIAGGD---------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEEEECSSC---------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCCC---------hHHHHHHHHHHhcCCEEEEec
Confidence 9999865443 246888999999999998753
No 309
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=93.98 E-value=0.29 Score=48.63 Aligned_cols=98 Identities=14% Similarity=0.034 Sum_probs=64.8
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCc------cC---
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLP------FF--- 376 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lp------f~--- 376 (467)
....+.+++ +||-+|+|. |.++..+++. |..|++ ++.++..++.+.+.|.-.++.... .++. ..
T Consensus 162 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 162 RRAGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVC--TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEE--EcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhcccc
Confidence 445677777 899999874 6777777764 888877 556677777777766432332221 1211 11
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+.+|+|+-...- ...+.+..+.|+|||.+++..
T Consensus 238 g~g~D~vid~~g~---------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 238 GDLPNVTIDCSGN---------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SSCCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCCC---------HHHHHHHHHHHhcCCEEEEEe
Confidence 2469999876543 246788899999999988754
No 310
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=93.96 E-value=0.18 Score=49.82 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=65.7
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cCCCccce
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FFDNTMDL 382 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~d~sFDl 382 (467)
....+.+++ +||-+|+|. |..+..+++. |.+|++ ++.++..++.+.+.|...++.....++. -..+.+|+
T Consensus 160 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~ 235 (340)
T 3s2e_A 160 KVTDTRPGQ--WVVISGIGGLGHVAVQYARAMGLRVAA--VDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHG 235 (340)
T ss_dssp HTTTCCTTS--EEEEECCSTTHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred HHcCCCCCC--EEEEECCCHHHHHHHHHHHHCCCeEEE--EeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence 334566776 888899875 8888888875 889988 5566777787877774333332221111 01236888
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+-...- ...+....+.|+|||.+++..
T Consensus 236 vid~~g~---------~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 236 VLVTAVS---------PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp EEESSCC---------HHHHHHHHHHEEEEEEEEECS
T ss_pred EEEeCCC---------HHHHHHHHHHhccCCEEEEeC
Confidence 8765432 357888999999999998753
No 311
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=93.72 E-value=0.17 Score=51.38 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=66.9
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-c------cCCC
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-P------FFDN 378 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-p------f~d~ 378 (467)
....+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|. ..+.....++ . ....
T Consensus 179 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~~~~~~~g~ 253 (398)
T 2dph_A 179 VSAGVKPGS--HVYIAGAGPVGRCAAAGARLLGAACVIV--GDQNPERLKLLSDAGF-ETIDLRNSAPLRDQIDQILGKP 253 (398)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEE--EESCHHHHHHHHTTTC-EEEETTSSSCHHHHHHHHHSSS
T ss_pred HHcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHcCC-cEEcCCCcchHHHHHHHHhCCC
Confidence 345677777 899999986 8888888875 87 8888 5566777777776664 3333222221 1 1123
Q ss_pred ccceEEeccccccc--------cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 379 TMDLIHTTGFMDGW--------LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 379 sFDlVis~~~L~h~--------~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+|+|+-.-.-... .+. ...+.+..++|++||++++..
T Consensus 254 g~Dvvid~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 254 EVDCGVDAVGFEAHGLGDEANTETP---NGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp CEEEEEECSCTTCBCSGGGTTSBCT---THHHHHHHHHEEEEEEEECCS
T ss_pred CCCEEEECCCCcccccccccccccc---HHHHHHHHHHHhcCCEEEEec
Confidence 69999865543110 001 146888999999999987643
No 312
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=92.77 E-value=0.43 Score=47.70 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=63.4
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++.... .++. ..++.+
T Consensus 187 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 187 AKVTPGS--TCAVFGLGGVGFSAIVGCKAAGASRIIG--VGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--ECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 4566776 899999874 6777777765 77 7888 555666677777766432332211 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 263 Dvvid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 263 DYAVECAGR---------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CEEEECCCC---------HHHHHHHHHHHhcCCCEEEEEc
Confidence 999865543 25788899999999 9988754
No 313
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=92.72 E-value=0.25 Score=48.87 Aligned_cols=97 Identities=15% Similarity=0.048 Sum_probs=60.7
Q ss_pred HhcCCCCCCceEEEECCC--ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVG--TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCG--tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sF 380 (467)
...+++++ +||-+|+| .|..+..+++. |.+|++++. ++..++.+.+.+....+.....++. .....+
T Consensus 139 ~~~~~~g~--~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 139 TLNLQRND--VLLVNACGSAIGHLFAQLSQILNFRLIAVTR--NNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp TSCCCTTC--EEEESSTTSHHHHHHHHHHHHHTCEEEEEES--SSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred hcccCCCC--EEEEeCCccHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCC
Confidence 34567777 89999987 56777777765 899998654 4445566666564323322222111 123479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|+.+..- ....+..+.|++||.+++...
T Consensus 215 Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 215 DAAIDSIGG----------PDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEEEESSCH----------HHHHHHHHTEEEEEEEEECCC
T ss_pred cEEEECCCC----------hhHHHHHHHhcCCCEEEEEee
Confidence 999876543 123344589999999988643
No 314
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=92.66 E-value=0.15 Score=51.62 Aligned_cols=80 Identities=14% Similarity=0.036 Sum_probs=56.7
Q ss_pred HHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHHHHH--cCCccEEEccCCCCc--cC--
Q 012235 306 LISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEMIAL--RGLIPLYVTLNQRLP--FF-- 376 (467)
Q Consensus 306 ~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~a~~--rg~i~~~~~d~~~Lp--f~-- 376 (467)
.+.+.+.+++++ +++|..+|.|..+..++++ ...|+| +|..+.+++.+.. ...+.+++++...+. ..
T Consensus 48 Evl~~L~i~pgg--iyVD~TlG~GGHS~~iL~~lg~~GrVig--~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~ 123 (347)
T 3tka_A 48 EAVNGLNIRPDG--IYIDGTFGRGGHSRLILSQLGEEGRLLA--IDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAER 123 (347)
T ss_dssp HHHHHTCCCTTC--EEEESCCTTSHHHHHHHTTCCTTCEEEE--EESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHhhCCCCCC--EEEEeCcCCCHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 344566777877 8999999999999999987 347888 6666777777632 123678888877663 11
Q ss_pred --CCccceEEecccc
Q 012235 377 --DNTMDLIHTTGFM 389 (467)
Q Consensus 377 --d~sFDlVis~~~L 389 (467)
.+++|.|+....+
T Consensus 124 g~~~~vDgILfDLGV 138 (347)
T 3tka_A 124 DLIGKIDGILLDLGV 138 (347)
T ss_dssp TCTTCEEEEEEECSC
T ss_pred CCCCcccEEEECCcc
Confidence 1368999976443
No 315
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=92.61 E-value=0.35 Score=48.52 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=64.4
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEcc--CCCCc-----cCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTL--NQRLP-----FFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d--~~~Lp-----f~d~s 379 (467)
...+.+++ +||=+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++... ...+. ..++.
T Consensus 188 ~~~~~~g~--~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 188 TAKVEPGS--NVAIFGLGTVGLAVAEGAKTAGASRIIG--IDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp TTCCCTTC--CEEEECCSHHHHHHHHHHHHHTCSCEEE--ECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCC
Confidence 34566776 889999874 7777777766 87 7888 55556667777766643333221 11111 12347
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEec
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDRF 420 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~~ 420 (467)
+|+|+-...- ...+....+.|++| |.+++...
T Consensus 264 ~D~vid~~g~---------~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 264 VDYSFECIGN---------VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp BSEEEECSCC---------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCCC---------HHHHHHHHHHhhccCCEEEEEcc
Confidence 9999965543 35788999999997 99887543
No 316
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=92.56 E-value=1.6 Score=43.40 Aligned_cols=136 Identities=12% Similarity=0.041 Sum_probs=79.7
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCccC-CCccceEEeccccccc-----
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLPFF-DNTMDLIHTTGFMDGW----- 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~-d~sFDlVis~~~L~h~----- 392 (467)
+++|+.||.|.++..+.+.|..++. .+|+.+.+.+....+.. .. .+|+..+... -..+|+|+....-..+
T Consensus 13 ~~~dLFaG~Gg~~~g~~~aG~~~v~-~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 13 RFIDLFAGLGGFRLALESCGAECVY-SNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEE-EECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred cEEEECCCcCHHHHHHHHCCCeEEE-EEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchhcc
Confidence 7999999999999999999987653 36777777776665421 22 5676655321 1358999976322111
Q ss_pred ----cchh-hHHHHHHHHHhccCCCcEEEEE-ecccC----CCCHHHHHHHHHHcCceeeEEEEccC-------CCCceE
Q 012235 393 ----LDML-LLDFILFDWDRILRPGGLLWID-RFFCN----KKDLDDYMYMFLQFRYKKHKWAISPK-------SKDEVY 455 (467)
Q Consensus 393 ----~~~~-~l~~~L~el~RvLKPGG~LiI~-~~~~~----~~~~~~~~~~i~~~Gf~~l~W~~~~k-------~~devy 455 (467)
.+.. .+-..+.++.+.++|.- +++- ..... ....+.+.+.++.+||.. .|.+..- .+..+|
T Consensus 90 ~~g~~d~r~~L~~~~~r~i~~~~P~~-~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v-~~~vl~a~~~GvPQ~R~R~~ 167 (327)
T 2c7p_A 90 QKGFEDSRGTLFFDIARIVREKKPKV-VFMENVKNFASHDNGNTLEVVKNTMNELDYSF-HAKVLNALDYGIPQKRERIY 167 (327)
T ss_dssp CCGGGSTTSCHHHHHHHHHHHHCCSE-EEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCC-EEEEEEGGGGTCSBCCEEEE
T ss_pred cCCCcchhhHHHHHHHHHHHhccCcE-EEEeCcHHHHhccccHHHHHHHHHHHhCCCEE-EEEEEEHHHcCCCccceEEE
Confidence 1211 12223344555568863 3442 22211 113447788889999964 4543322 455677
Q ss_pred EEEEe
Q 012235 456 LSALL 460 (467)
Q Consensus 456 l~avl 460 (467)
+.+..
T Consensus 168 iv~~~ 172 (327)
T 2c7p_A 168 MICFR 172 (327)
T ss_dssp EEEEB
T ss_pred EEEEe
Confidence 77754
No 317
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=92.54 E-value=0.46 Score=47.51 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=62.6
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |..+..+++. |. .|++ ++.++..++.+++.|...++.... ..+. ..++.+
T Consensus 187 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 187 AKVTQGS--TCAVFGLGGVGLSVIMGCKAAGAARIIG--VDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 4566776 899999875 6777777764 77 7888 555666677777666432332211 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 263 D~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 263 DFSFEVIGR---------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp SEEEECSCC---------HHHHHHHHHHBCTTTCEEEECS
T ss_pred cEEEECCCC---------HHHHHHHHHHhhcCCcEEEEec
Confidence 999866543 25688889999999 9988753
No 318
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=92.52 E-value=0.43 Score=47.77 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=62.7
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |..+..+++. |. .|++ ++.++..++.+++.|...++.... ..+. ...+.+
T Consensus 188 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 188 AKVEPGS--TCAVFGLGAVGLAAVMGCHSAGAKRIIA--VDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 4566676 899999864 6777777764 77 7888 556666777777666432322111 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+....+.|++| |.+++..
T Consensus 264 D~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 264 DFSLECVGN---------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCC---------HHHHHHHHHHhhcCCcEEEEEc
Confidence 999865543 25688899999999 9988753
No 319
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=92.51 E-value=0.48 Score=47.33 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=62.9
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++.... ..+. ..++.+
T Consensus 186 ~~~~~g~--~VlV~GaG~vG~~avqla~~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 186 AKLEPGS--VCAVFGLGGVGLAVIMGCKVAGASRIIG--VDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEE--ECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 4566776 899999864 6777777765 87 7888 555666677777666433332211 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-...- ...+.+..+.|+++ |.+++..
T Consensus 262 D~vid~~g~---------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 262 DYSFECIGN---------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp SEEEECSCC---------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCc---------HHHHHHHHHhhccCCcEEEEEe
Confidence 999866543 25688899999999 9988754
No 320
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=92.35 E-value=0.23 Score=49.74 Aligned_cols=97 Identities=12% Similarity=-0.003 Sum_probs=63.7
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
...+++++ +||-+|+|. |..+..+++. |..|++ ++.++..++.+.+.|...++..+..++. .....+|
T Consensus 184 ~~~~~~g~--~VlV~G~G~vG~~a~qla~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D 259 (363)
T 3uog_A 184 KGHLRAGD--RVVVQGTGGVALFGLQIAKATGAEVIV--TSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGAD 259 (363)
T ss_dssp TTCCCTTC--EEEEESSBHHHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEE--EecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCce
Confidence 34566777 899999775 6677777665 889888 4556667777777775333332212211 1234799
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+-...- ..+....+.|+|||.+++...
T Consensus 260 ~vid~~g~----------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 260 HILEIAGG----------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp EEEEETTS----------SCHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCCh----------HHHHHHHHHhhcCCEEEEEec
Confidence 99865542 246778889999999988643
No 321
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=92.06 E-value=2.1 Score=42.76 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=81.2
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEE--EEecCCCHHHHHHHHHcCCccEEEccCCCCcc---CCCccceEEeccccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIV--STALNLGAPFNEMIALRGLIPLYVTLNQRLPF---FDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~--gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h~ 392 (467)
+++|+-||.|.++..+.+.|. +++ + +|+.+.+.+....+..-.++.+|+..+.. +...+|+++....=..+
T Consensus 12 ~vidLFaG~GG~~~G~~~aG~~~~~v~~a--~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 12 NVIEFFSGIGGLRSSYERSSININATFIP--FDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp EEEEETCTTTHHHHHHHHSSCCCCEEEEE--ECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred EEEEECCChhHHHHHHHHcCCCceEEEEE--EECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence 799999999999999998884 444 5 66667777666554322355677776642 22368999976431122
Q ss_pred -----------cchhhHHHHHHHHHh-cc-----CCCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeEEEEccC----
Q 012235 393 -----------LDMLLLDFILFDWDR-IL-----RPGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHKWAISPK---- 449 (467)
Q Consensus 393 -----------~~~~~l~~~L~el~R-vL-----KPGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~W~~~~k---- 449 (467)
.+. ...++.++.| ++ +|. ++++-.-.. .....+.+.+.++.+||.. .|.+..-
T Consensus 90 s~S~ag~~~~~~d~--r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v-~~~vl~a~~yG 165 (327)
T 3qv2_A 90 NNSIMSKHKDINDP--RAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYI-KDIICSPIDIG 165 (327)
T ss_dssp SHHHHTTTCTTTCG--GGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEE-EEEEECGGGGT
T ss_pred ccccCCCCCCCccc--cchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEE-EEEEEeHHHcC
Confidence 122 1246666666 54 454 334422211 1223457888899999965 4544332
Q ss_pred ---CCCceEEEEE
Q 012235 450 ---SKDEVYLSAL 459 (467)
Q Consensus 450 ---~~devyl~av 459 (467)
.+..+|+.+.
T Consensus 166 vPQ~R~R~fivg~ 178 (327)
T 3qv2_A 166 IPNSRTRYYVMAR 178 (327)
T ss_dssp CSBCCCEEEEEEE
T ss_pred CCccceEEEEEEE
Confidence 4566777765
No 322
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=92.05 E-value=0.37 Score=47.36 Aligned_cols=97 Identities=16% Similarity=0.041 Sum_probs=62.3
Q ss_pred HHhcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHH-HHcCCccEEEccCCCCc-----cCCCc
Q 012235 309 DILAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMI-ALRGLIPLYVTLNQRLP-----FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a-~~rg~i~~~~~d~~~Lp-----f~d~s 379 (467)
+...+.+++ +||-+|+ |.|..+..+++. |.+|+++ +.++..++.+ .+.+....+.....++. ...+.
T Consensus 143 ~~~~~~~g~--~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 218 (336)
T 4b7c_A 143 DVGQPKNGE--TVVISGAAGAVGSVAGQIARLKGCRVVGI--AGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKG 218 (336)
T ss_dssp HTTCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTC
T ss_pred HhcCCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCC
Confidence 445677777 8999998 456677666654 8899884 5556666666 44453222222111111 11356
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+.+..- ..+....+.|++||.+++..
T Consensus 219 ~d~vi~~~g~----------~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 219 IDVFFDNVGG----------EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEEEESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred ceEEEECCCc----------chHHHHHHHHhhCCEEEEEe
Confidence 9999875543 36788889999999998754
No 323
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=91.97 E-value=0.24 Score=49.86 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-CccCCCccceEEecc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LPFFDNTMDLIHTTG 387 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lpf~d~sFDlVis~~ 387 (467)
..+++++ +||-+|+|. |.++..+++. |..|+++ +.++..++.+.+.|...++.....+ ..-..+.+|+|+-..
T Consensus 190 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~ 265 (369)
T 1uuf_A 190 WQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAF--TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV 265 (369)
T ss_dssp TTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE--ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECC
Confidence 3567777 899999874 7777777764 8888884 4556666777766643333221111 000015799998654
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.- ...+.+..+.|+|||.+++.
T Consensus 266 g~---------~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 266 AA---------PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp SS---------CCCHHHHHTTEEEEEEEEEC
T ss_pred CC---------HHHHHHHHHHhccCCEEEEe
Confidence 43 12466788999999998874
No 324
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=91.89 E-value=0.25 Score=50.10 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=40.4
Q ss_pred eEEEECCCccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHH---cCCccEEEccCCCCc
Q 012235 320 IGLDFGVGTGTFAARMREQ--NVTIVSTALNLGAPFNEMIAL---RGLIPLYVTLNQRLP 374 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~---rg~i~~~~~d~~~Lp 374 (467)
.|||||.|.|.++..|+++ +..|+++++| ..++....+ .+.+.++.+|+..+.
T Consensus 61 ~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D--~~l~~~L~~~~~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 61 KVLDLYPGVGIQSAIFYNKYCPRQYSLLEKR--SSLYKFLNAKFEGSPLQILKRDPYDWS 118 (353)
T ss_dssp EEEEESCTTCHHHHHHHHHHCCSEEEEECCC--HHHHHHHHHHTTTSSCEEECSCTTCHH
T ss_pred EEEEECCCCCHHHHHHHhhCCCCEEEEEecC--HHHHHHHHHhccCCCEEEEECCccchh
Confidence 8999999999999999986 5689985554 556555554 245788999986553
No 325
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=91.89 E-value=3.3 Score=40.39 Aligned_cols=138 Identities=11% Similarity=0.051 Sum_probs=83.0
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccC-CCccceEEeccc-----cc---
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFF-DNTMDLIHTTGF-----MD--- 390 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~-d~sFDlVis~~~-----L~--- 390 (467)
+|||+=||.|.++..+.+.|.+++. .+|+.+.+.+..+.+....++.+|+..+... -..+|+++.... ..
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~-a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~ 80 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIIC-ANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL 80 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEE-EEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEE-EEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence 6899999999999999988988763 3555566666666655556778887776422 245899986431 11
Q ss_pred -cccchh-hHHHHHHHHHhccCCCcEEEEEe---cccCC--CCHHHHHHHHHHcCceeeEEEEcc-C------CCCceEE
Q 012235 391 -GWLDML-LLDFILFDWDRILRPGGLLWIDR---FFCNK--KDLDDYMYMFLQFRYKKHKWAISP-K------SKDEVYL 456 (467)
Q Consensus 391 -h~~~~~-~l~~~L~el~RvLKPGG~LiI~~---~~~~~--~~~~~~~~~i~~~Gf~~l~W~~~~-k------~~devyl 456 (467)
...+.. .+-..+.++.+.+||.- |++-. +...+ ...+.+.+.++.+||.. .|.+.. . .+..+|+
T Consensus 81 ~g~~d~R~~L~~~~~r~i~~~~Pk~-~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v-~~~vlna~~yGvPQ~R~Rvfi 158 (331)
T 3ubt_Y 81 RGIDDPRGKLFYEYIRILKQKKPIF-FLAENVKGMMAQRHNKAVQEFIQEFDNAGYDV-HIILLNANDYGVAQDRKRVFY 158 (331)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHCCSE-EEEEECCGGGGCTTSHHHHHHHHHHHHHTEEE-EEEEEEGGGTTCSBCCEEEEE
T ss_pred cCCCCchhHHHHHHHHHHhccCCeE-EEeeeecccccccccchhhhhhhhhccCCcEE-EEEecccccCCCCcccceEEE
Confidence 111221 12222334555678963 34422 12222 23447788889999965 454333 2 4556777
Q ss_pred EEEe
Q 012235 457 SALL 460 (467)
Q Consensus 457 ~avl 460 (467)
.++.
T Consensus 159 vg~r 162 (331)
T 3ubt_Y 159 IGFR 162 (331)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7653
No 326
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=91.88 E-value=0.05 Score=68.00 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=38.6
Q ss_pred eEEEECCCccHHHHHHhhC-C------CEEEEEecCCCHHHHHHHHHcC-CccEEEc--cCCC-CccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGTFAARMREQ-N------VTIVSTALNLGAPFNEMIALRG-LIPLYVT--LNQR-LPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~-g------~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~--d~~~-Lpf~d~sFDlVis~~~ 388 (467)
+||+||.|+|..+..+.+. + ...+.+ |++....+.++++- ...+... |... .++..++||+|++..+
T Consensus 1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~t--d~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTAT--DRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEE--CSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred eEEEECCCccHHHHHHHHhhcccCcccceEEEe--cCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 7999999999765544322 1 133333 44443332222210 0122221 2222 1345678999999999
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+ |-..+ +...+.++.++|||||++++..
T Consensus 1321 l-~~t~~--~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1321 L-ATLGD--PAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp -----------------------CCEEEEEE
T ss_pred c-ccccc--HHHHHHHHHHhcCCCcEEEEEe
Confidence 9 65544 4678999999999999998865
No 327
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=91.81 E-value=0.21 Score=47.92 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=35.1
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r 360 (467)
.+++ .|||..||+|+.+....+.|..++| +|+++.+.+.+.+|
T Consensus 211 ~~~~--~vlD~f~GsGtt~~~a~~~gr~~ig--~e~~~~~~~~~~~r 253 (260)
T 1g60_A 211 NPND--LVLDCFMGSGTTAIVAKKLGRNFIG--CDMNAEYVNQANFV 253 (260)
T ss_dssp CTTC--EEEESSCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHH
T ss_pred CCCC--EEEECCCCCCHHHHHHHHcCCeEEE--EeCCHHHHHHHHHH
Confidence 4566 8999999999999999999999999 55666777666554
No 328
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=91.80 E-value=0.56 Score=46.93 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=62.5
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccC--CCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLN--QRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~--~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++.... .++. ..++.+
T Consensus 191 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 191 AKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIA--IDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp SCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 3566676 899999874 6777777765 77 7888 555666677777666432322111 1111 112479
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCC-cEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPG-GLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPG-G~LiI~~ 419 (467)
|+|+-.-.- ...+.+..+.|++| |.+++..
T Consensus 267 Dvvid~~G~---------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 267 DYSLDCAGT---------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SEEEESSCC---------HHHHHHHHHTBCTTTCEEEECC
T ss_pred cEEEECCCC---------HHHHHHHHHHhhcCCCEEEEEC
Confidence 999865543 25788899999999 9988743
No 329
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=91.60 E-value=0.38 Score=47.16 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=58.9
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCc-----cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLP-----FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lp-----f~d~sFD 381 (467)
..+.+++ +||-.|+ |.|..+..++. .|.+|+++ +.++..++.+.+.+....+.... ..+. ...+.+|
T Consensus 141 ~~~~~g~--~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~--~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 141 CGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVGA--AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SCCCSSC--EEEEESTTBHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred hCCCCCC--EEEEecCCCcHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 3456666 8999998 45666655554 58899884 44566666665545321221111 1110 1124799
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+.+..+.|++||.+++..
T Consensus 217 ~vi~~~g~----------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVGG----------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCh----------HHHHHHHHHHhcCCEEEEEe
Confidence 99876653 24778889999999988754
No 330
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=91.27 E-value=0.4 Score=47.01 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=62.3
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+++++ +||-+|+ |.|..+..+++. |.+|+++ +.++..++.+.+.|....+.....++. .....+|
T Consensus 136 ~~~~~g~--~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 136 YQVKPGE--IILFHAAAGGVGSLACQWAKALGAKLIGT--VSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHHTCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred cCCCCCC--EEEEEcCCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 3466676 8999983 457777777765 8899884 456666777776664333322222111 1234799
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+.+..- ..+....+.|++||.+++...
T Consensus 212 vvid~~g~----------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 212 VVYDGVGQ----------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EEEESSCG----------GGHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCh----------HHHHHHHHHhcCCCEEEEEec
Confidence 99876543 256778899999999988543
No 331
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=91.08 E-value=0.77 Score=45.84 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=63.6
Q ss_pred HHhcCCCCCCceEEEEC--CCccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCcc
Q 012235 309 DILAIKPGETRIGLDFG--VGTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTM 380 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIG--CGtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sF 380 (467)
....+.+++ +||-+| .|.|..+..+++. |.+|+++ +.++..++.+++.|...++..+...+. ...+.+
T Consensus 157 ~~~~~~~g~--~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~--~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 157 ELGGLSEGK--KVLVTAAAGGTGQFAMQLSKKAKCHVIGT--CSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGV 232 (362)
T ss_dssp HHTCCCTTC--EEEETTTTBTTHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred HhcCCCCCC--EEEEeCCCcHHHHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCC
Confidence 344567777 899999 4567777777764 8888884 455666677766664323322211110 113469
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
|+|+.+..- ..+..+.+.|+++|.+++...
T Consensus 233 D~vid~~g~----------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 233 DVVYESVGG----------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEEEECSCT----------HHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCCH----------HHHHHHHHHHhcCCEEEEEeC
Confidence 999876542 367788899999999887543
No 332
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=90.98 E-value=0.83 Score=45.03 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=60.9
Q ss_pred cCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--cC--CCccceEEe
Q 012235 312 AIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP--FF--DNTMDLIHT 385 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp--f~--d~sFDlVis 385 (467)
.+.+++ +||-+|+| .|..+..+++. |.+|++ ++.++..++.+.+.+...++.....++. .. .+.+|+|+.
T Consensus 161 ~~~~g~--~VlV~GaG~vG~~~~~~a~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid 236 (339)
T 1rjw_A 161 GAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVA--VDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVV 236 (339)
T ss_dssp TCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEE
Confidence 667776 89999986 46777776654 888888 5566777777766554222211111110 00 046899987
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...- ...+.+..+.|++||.+++.
T Consensus 237 ~~g~---------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 237 TAVS---------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SSCC---------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCC---------HHHHHHHHHHhhcCCEEEEe
Confidence 6543 25678889999999998874
No 333
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=90.85 E-value=0.59 Score=46.25 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=61.2
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+ +++ +||-+|+|. |..+..+++. |. +|++ ++.++..++.+.+.|...++.....++. .....+|
T Consensus 164 ~~~-~g~--~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~--~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 164 GPI-SGK--SVLITGAGPLGLLGIAVAKASGAYPVIV--SEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp SCC-TTC--CEEEECCSHHHHHHHHHHHHTTCCSEEE--ECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred cCC-CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 345 666 899999863 6667777654 87 8888 5556666777776664223222111111 1123699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+..... ...+.+..+.|+++|.++...
T Consensus 239 ~vid~~g~---------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 239 VFLEFSGA---------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEECSCC---------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCC---------HHHHHHHHHHHhcCCEEEEEc
Confidence 99876543 256788899999999988753
No 334
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=90.73 E-value=0.64 Score=45.86 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=65.1
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||-+|+|. |..+..+++. +..|++ ++.++..++.+++.|...++.... ++. .....+|+
T Consensus 168 ~~~~g~--~vlv~GaG~vG~~a~qla~~~g~~~Vi~--~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~v~~~t~g~g~d~ 242 (345)
T 3jv7_A 168 LLGPGS--TAVVIGVGGLGHVGIQILRAVSAARVIA--VDLDDDRLALAREVGADAAVKSGA-GAADAIRELTGGQGATA 242 (345)
T ss_dssp GCCTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEE--EESCHHHHHHHHHTTCSEEEECST-THHHHHHHHHGGGCEEE
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCHHHHHHHHHcCCCEEEcCCC-cHHHHHHHHhCCCCCeE
Confidence 566777 899999875 7778888765 678888 556777788887777533333221 111 11237999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+-.-.- ...+....+.|++||.+++..
T Consensus 243 v~d~~G~---------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 243 VFDFVGA---------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEESSCC---------HHHHHHHHHHEEEEEEEEECS
T ss_pred EEECCCC---------HHHHHHHHHHHhcCCEEEEEC
Confidence 9875543 357889999999999998854
No 335
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=90.69 E-value=0.27 Score=47.99 Aligned_cols=83 Identities=22% Similarity=0.143 Sum_probs=52.6
Q ss_pred ccEEEccCCC-Cc-cCCCccceEEeccccccccc-----------------hhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 363 IPLYVTLNQR-LP-FFDNTMDLIHTTGFMDGWLD-----------------MLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 363 i~~~~~d~~~-Lp-f~d~sFDlVis~~~L~h~~~-----------------~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
+.++++|+.. ++ +++++||+|+++-......+ ...+..++.++.|+|||||.+++..-...
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~ 101 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA 101 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 5688888665 33 45789999999866521100 01134678899999999999988542110
Q ss_pred ------C----CCH-HHHHHHHHHcCceee---EEE
Q 012235 424 ------K----KDL-DDYMYMFLQFRYKKH---KWA 445 (467)
Q Consensus 424 ------~----~~~-~~~~~~i~~~Gf~~l---~W~ 445 (467)
. -.. ..+..+++..||... -|.
T Consensus 102 ~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW~ 137 (297)
T 2zig_A 102 VARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIWH 137 (297)
T ss_dssp EECC----EEEECHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccccCCcccccccHHHHHHHHHHcCCeeeccEEEe
Confidence 0 011 256677888898544 365
No 336
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=90.62 E-value=1.1 Score=45.15 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=66.4
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCC-Cc------cCCCc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LP------FFDNT 379 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lp------f~d~s 379 (467)
...+++++ +||-+|+|. |.++..+++. |. .|++ ++.++..++.+++.|. ..+...... +. .....
T Consensus 180 ~~~~~~g~--~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~--~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~v~~~t~g~g 254 (398)
T 1kol_A 180 TAGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIV--GDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPE 254 (398)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred HcCCCCCC--EEEEECCcHHHHHHHHHHHHCCCCeEEE--EcCCHHHHHHHHHcCC-cEEccCCcchHHHHHHHHhCCCC
Confidence 34677777 899999875 7788888775 77 6777 5566777788877775 333322111 10 12246
Q ss_pred cceEEeccccc---------cccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMD---------GWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~---------h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+|+-.-.-. |..+. ...+.+..++|++||.+++..
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 255 VDCAVDAVGFEARGHGHEGAKHEAP---ATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCT---THHHHHHHHHEEEEEEEEECS
T ss_pred CCEEEECCCCcccccccccccccch---HHHHHHHHHHHhcCCEEEEec
Confidence 99999654421 22222 247888999999999988754
No 337
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=90.52 E-value=0.5 Score=46.42 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=60.1
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||-+|+ |.|..+..+++. |.+|+++ +.++..++.+.+.+...++.....++. .....+|+
T Consensus 145 ~~~~g~--~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~ 220 (334)
T 3qwb_A 145 HVKKGD--YVLLFAAAGGVGLILNQLLKMKGAHTIAV--ASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDA 220 (334)
T ss_dssp CCCTTC--EEEESSTTBHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred cCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceE
Confidence 456676 8999994 456666666654 8899884 455666777776664333332222211 12346999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+.+..- ..+....+.|++||.+++.
T Consensus 221 vid~~g~----------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 221 SFDSVGK----------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp EEECCGG----------GGHHHHHHHEEEEEEEEEC
T ss_pred EEECCCh----------HHHHHHHHHhccCCEEEEE
Confidence 9876543 2567788899999998885
No 338
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=90.42 E-value=0.77 Score=45.38 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=60.9
Q ss_pred hcCCCCCCceEEEECCC--ccHHHHHHhh-C-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCC-Ccc
Q 012235 311 LAIKPGETRIGLDFGVG--TGTFAARMRE-Q-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFD-NTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG--tG~~a~~La~-~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d-~sF 380 (467)
..+.+++ +||-+|+| .|..+..+++ . |.+|+++ +.++..++.+++.+...++....... .... +.+
T Consensus 166 ~~~~~g~--~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 1jvb_A 166 ASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIGV--DVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 241 (347)
T ss_dssp TTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred cCCCCCC--EEEEECCCccHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCc
Confidence 4566776 89999998 4455555554 4 8888884 45566666666655322222211111 1112 579
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|+.+..- ...+.+..++|+|||.+++..
T Consensus 242 d~vi~~~g~---------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 242 DAVIDLNNS---------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp EEEEESCCC---------HHHHTTGGGGEEEEEEEEECC
T ss_pred eEEEECCCC---------HHHHHHHHHHHhcCCEEEEEC
Confidence 999876654 246788899999999988754
No 339
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=90.37 E-value=0.25 Score=48.18 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHhcCCCCCCceEEEECCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEec
Q 012235 309 DILAIKPGETRIGLDFGVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~ 386 (467)
....+++++ +||=+|+| .|.++..+++. |.+|++++ ++...+.+++.|.-.++ .|.+.+ .+.+|+|+-.
T Consensus 136 ~~~~~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~---~~~~~~~~~~lGa~~v~-~d~~~v---~~g~Dvv~d~ 206 (315)
T 3goh_A 136 EKIPLTKQR--EVLIVGFGAVNNLLTQMLNNAGYVVDLVS---ASLSQALAAKRGVRHLY-REPSQV---TQKYFAIFDA 206 (315)
T ss_dssp TTSCCCSCC--EEEEECCSHHHHHHHHHHHHHTCEEEEEC---SSCCHHHHHHHTEEEEE-SSGGGC---CSCEEEEECC
T ss_pred hhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEE---ChhhHHHHHHcCCCEEE-cCHHHh---CCCccEEEEC
Confidence 334566776 89999986 37777778765 88999865 45556667666642333 232222 5679999864
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
-.- ..+.+..+.|+|||.++..
T Consensus 207 ~g~----------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 207 VNS----------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp -----------------TTGGGEEEEEEEEEE
T ss_pred CCc----------hhHHHHHHHhcCCCEEEEE
Confidence 432 1235678999999998875
No 340
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=90.35 E-value=0.66 Score=45.86 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=59.6
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEcc-CCCCc-----cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTL-NQRLP-----FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d-~~~Lp-----f~d~sFDl 382 (467)
.+.+++ +||-+|+ |.|..+..++. .|..|++++.+ +...+.+.+.+....+... ...+. ..++.+|+
T Consensus 166 ~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~--~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~ 241 (347)
T 2hcy_A 166 NLMAGH--WVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG--EGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHG 241 (347)
T ss_dssp TCCTTC--EEEEETTTSHHHHHHHHHHHHTTCEEEEEECS--TTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEE
T ss_pred CCCCCC--EEEEECCCchHHHHHHHHHHHCCCcEEEEcCC--HHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCE
Confidence 566666 8999998 45666666665 58899885544 4445556555532222111 11111 11126899
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.+... ...+..+.+.|++||.+++..
T Consensus 242 vi~~~g~---------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 242 VINVSVS---------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEECSSC---------HHHHHHHTTSEEEEEEEEECC
T ss_pred EEECCCc---------HHHHHHHHHHHhcCCEEEEEe
Confidence 9877653 257888999999999988754
No 341
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=90.01 E-value=0.52 Score=46.65 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=60.2
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+++++ +||-+|+ |.|..+..+++. |.+|++++ .++..++.+.+.+...++... .++. .....+|
T Consensus 155 ~~~~~g~--~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 155 GQLRAGE--TVLVLGAAGGIGTAAIQIAKGMGAKVIAVV--NRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred cCCCCCC--EEEEECCCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 4566676 8999997 457777777765 88998854 445556666666643333222 2221 1233699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+....+.|++||.+++..
T Consensus 230 vvid~~g~----------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 230 MVVDPIGG----------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEESCC------------CHHHHHHTEEEEEEEEEC-
T ss_pred EEEECCch----------hHHHHHHHhhcCCCEEEEEE
Confidence 99876543 24677889999999998753
No 342
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=89.71 E-value=1.7 Score=43.03 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=63.3
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCE-EEEEecCCCHHHHHHHHHcCC--ccEEEccC--CCCc------c
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVT-IVSTALNLGAPFNEMIALRGL--IPLYVTLN--QRLP------F 375 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~-V~gvdiDiS~~~l~~a~~rg~--i~~~~~d~--~~Lp------f 375 (467)
....+.+++ +||=+|+|. |.++..+++. |.. |++ .+.++..++.+++... +.+...+. .++. .
T Consensus 173 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 173 QRAGVRLGD--PVLICGAGPIGLITMLCAKAAGACPLVI--TDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp HHHTCCTTC--CEEEECCSHHHHHHHHHHHHTTCCSEEE--EESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred HHcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHh
Confidence 455677777 888899865 7777777765 876 887 4556666666665431 11111100 1110 1
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
....+|+|+-.-.- ...+....++|++||.+++...
T Consensus 249 ~g~g~Dvvid~~g~---------~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 249 GGIEPAVALECTGV---------ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp SSCCCSEEEECSCC---------HHHHHHHHHHSCTTCEEEECCC
T ss_pred CCCCCCEEEECCCC---------hHHHHHHHHHhcCCCEEEEEcc
Confidence 24579999976543 2578889999999999988543
No 343
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=89.65 E-value=5.3 Score=39.84 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=80.8
Q ss_pred eEEEECCCccHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCcc---CCCccceEEecccccc--
Q 012235 320 IGLDFGVGTGTFAARMREQNV--TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPF---FDNTMDLIHTTGFMDG-- 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf---~d~sFDlVis~~~L~h-- 391 (467)
+++|+-||.|.++..+.+.|. +++ ..+|+.+.+.+....+. ...++.+|+..+.. +...+|+++....=..
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v-~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIV-AAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEE-EEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred EEEEECcCccHHHHHHHHcCCCceEE-EEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 689999999999999988885 433 23677777777766653 35577788776642 2336899996532111
Q ss_pred -------ccchhhHHHHHHHHHhc---cC-CCcEEEEEeccc--CCCCHHHHHHHHHHcCceeeEEEEccC------CCC
Q 012235 392 -------WLDMLLLDFILFDWDRI---LR-PGGLLWIDRFFC--NKKDLDDYMYMFLQFRYKKHKWAISPK------SKD 452 (467)
Q Consensus 392 -------~~~~~~l~~~L~el~Rv---LK-PGG~LiI~~~~~--~~~~~~~~~~~i~~~Gf~~l~W~~~~k------~~d 452 (467)
..+.. ..++.++.|+ ++ |. ++++-.-.. .....+.+.+.++.+||..-....... .+.
T Consensus 84 ~ag~~~~~~d~r--~~L~~~~~r~i~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~ 160 (333)
T 4h0n_A 84 RNGKYLDDNDPR--TNSFLYLIGILDQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRL 160 (333)
T ss_dssp ETTEECCTTCTT--SCCHHHHHHHGGGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCC
T ss_pred hhhhccCCcCcc--cccHHHHHHHHHHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccce
Confidence 11111 1234444444 44 64 333322211 122345788889999997643333332 456
Q ss_pred ceEEEEEe
Q 012235 453 EVYLSALL 460 (467)
Q Consensus 453 evyl~avl 460 (467)
.+|+.+..
T Consensus 161 R~fiva~r 168 (333)
T 4h0n_A 161 RYYCTARR 168 (333)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 67777754
No 344
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=89.33 E-value=0.87 Score=45.31 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+++++ +||-.|+ |.|..+..+++ .|..|+++ +.++..++.+.+.+....+......+. ...+.+|
T Consensus 166 ~~~~~g~--~vlV~GasggiG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D 241 (351)
T 1yb5_A 166 ACVKAGE--SVLVHGASGGVGLAACQIARAYGLKILGT--AGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 241 (351)
T ss_dssp SCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred hCCCCcC--EEEEECCCChHHHHHHHHHHHCCCEEEEE--eCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcE
Confidence 3566666 8999997 45666666655 48888884 455666666665553222222111110 1123699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+.+..++|++||.+++..
T Consensus 242 ~vi~~~G~----------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 242 IIIEMLAN----------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEESCHH----------HHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCh----------HHHHHHHHhccCCCEEEEEe
Confidence 99876543 25677889999999988743
No 345
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=89.12 E-value=1.6 Score=44.23 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=59.4
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||=+|+|. |.++..+++. |. .|++ ++.++..++.+++.|...++.....++. .....+|+
T Consensus 210 ~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~ 285 (404)
T 3ip1_A 210 GIRPGD--NVVILGGGPIGLAAVAILKHAGASKVIL--SEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKL 285 (404)
T ss_dssp CCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEE--ECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSE
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCE
Confidence 355666 888899864 6777777765 87 7888 6667777788877774333322222211 12346999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+-.-.-. ......++.-+.+++++||.+++..
T Consensus 286 vid~~g~~----~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 286 FLEATGVP----QLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp EEECSSCH----HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred EEECCCCc----HHHHHHHHHHHHhccCCCcEEEEeC
Confidence 99654431 0001223333335559999998854
No 346
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=89.11 E-value=0.8 Score=45.17 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=59.5
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+.+++ +||-+|+ |.|..+..+++ .|.+|+++ +.++..++.+.+.+...++......+. ...+.+|+
T Consensus 163 ~~~~g~--~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~--~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~ 238 (343)
T 2eih_A 163 GVRPGD--DVLVMAAGSGVSVAAIQIAKLFGARVIAT--AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADK 238 (343)
T ss_dssp CCCTTC--EEEECSTTSTTHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEE
T ss_pred CCCCCC--EEEEECCCchHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 455666 8999998 56777777765 48888884 455666666665553222221111110 11247999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.+..- ..+..+.+.|+++|.+++..
T Consensus 239 vi~~~g~----------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 239 VVDHTGA----------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp EEESSCS----------SSHHHHHHHEEEEEEEEESS
T ss_pred EEECCCH----------HHHHHHHHhhccCCEEEEEe
Confidence 9876542 24677788999999988743
No 347
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=89.01 E-value=0.72 Score=46.36 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=62.6
Q ss_pred hc-CCCCCCceEEEECCC-ccHHHHHHhhC-C-CEEEEEecCCCHHHHHHHHHcCCccEEEcc---CCCC----c--cCC
Q 012235 311 LA-IKPGETRIGLDFGVG-TGTFAARMREQ-N-VTIVSTALNLGAPFNEMIALRGLIPLYVTL---NQRL----P--FFD 377 (467)
Q Consensus 311 L~-l~~g~~r~VLDIGCG-tG~~a~~La~~-g-~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---~~~L----p--f~d 377 (467)
.. +.+++ +||-+|+| .|..+..+++. | .+|++ ++.++..++.+++.|.-.++... ..++ . ...
T Consensus 190 ~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g 265 (380)
T 1vj0_A 190 YPESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIV--IAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG 265 (380)
T ss_dssp CSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEE--EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred cCCCCCCC--EEEEECcCHHHHHHHHHHHHcCCceEEE--EcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCC
Confidence 45 66676 89999966 36777777765 7 58988 55566777777776643333222 1111 0 112
Q ss_pred CccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 378 NTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 378 ~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
..+|+|+-...- ...+.+..+.|++||.+++...
T Consensus 266 ~g~Dvvid~~g~---------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 266 RGADFILEATGD---------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp SCEEEEEECSSC---------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCCcEEEECCCC---------HHHHHHHHHHHhcCCEEEEEec
Confidence 369999866543 1367888899999999887543
No 348
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=88.94 E-value=1.2 Score=44.19 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=60.9
Q ss_pred HhcCCCC------CCceEEEECCCc-cHHH-HHHh-hC-CCE-EEEEecCCC-HHHHHHHHHcCCccEEEccCCCCc---
Q 012235 310 ILAIKPG------ETRIGLDFGVGT-GTFA-ARMR-EQ-NVT-IVSTALNLG-APFNEMIALRGLIPLYVTLNQRLP--- 374 (467)
Q Consensus 310 lL~l~~g------~~r~VLDIGCGt-G~~a-~~La-~~-g~~-V~gvdiDiS-~~~l~~a~~rg~i~~~~~d~~~Lp--- 374 (467)
...+.++ + +||-+|+|. |.++ ..++ +. |.. |++++.+.. ...++.+.+.|. ..+.....++.
T Consensus 161 ~~~~~~g~~~~~~~--~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa-~~v~~~~~~~~~i~ 237 (357)
T 2b5w_A 161 HAYASRSAFDWDPS--SAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDA-TYVDSRQTPVEDVP 237 (357)
T ss_dssp HHHHTTTTSCCCCC--EEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTC-EEEETTTSCGGGHH
T ss_pred hcCCCCCcccCCCC--EEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCC-cccCCCccCHHHHH
Confidence 3456666 6 899999753 6777 7777 54 876 888655432 014566666664 22221111110
Q ss_pred -cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 375 -FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 375 -f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
. .+.+|+|+-...- ...+.+..++|++||.+++...
T Consensus 238 ~~-~gg~Dvvid~~g~---------~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 238 DV-YEQMDFIYEATGF---------PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp HH-SCCEEEEEECSCC---------HHHHHHHHHHEEEEEEEEECCC
T ss_pred Hh-CCCCCEEEECCCC---------hHHHHHHHHHHhcCCEEEEEeC
Confidence 1 2378999865543 2468888999999999887543
No 349
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=88.93 E-value=0.97 Score=44.42 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=60.0
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHH-HcCCccEEEcc-CCCCc-----cCCCcc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIA-LRGLIPLYVTL-NQRLP-----FFDNTM 380 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~-~rg~i~~~~~d-~~~Lp-----f~d~sF 380 (467)
..+.+++ +||-+|+ |.|..+..++. .|.+|+++ +.++..++.+. +.|....+... ...+. ...+.+
T Consensus 151 ~~~~~g~--~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 151 CSPKEGE--TVYVSAASGAVGQLVGQLAKMMGCYVVGS--AGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred hCCCCCC--EEEEECCCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 4566676 8999997 46677766665 48888884 45566666665 34432222111 11111 112469
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|+.+..- ..+....+.|++||.+++..
T Consensus 227 d~vi~~~g~----------~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 227 DIYFENVGG----------KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEESSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCCH----------HHHHHHHHHHhcCCEEEEEc
Confidence 999876543 36788899999999988753
No 350
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=88.89 E-value=0.89 Score=44.86 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=61.8
Q ss_pred cCCCCCCceEEEECCCc-cHHHHHHhh-C--CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCC--ccC-CCccceE
Q 012235 312 AIKPGETRIGLDFGVGT-GTFAARMRE-Q--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRL--PFF-DNTMDLI 383 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGt-G~~a~~La~-~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~L--pf~-d~sFDlV 383 (467)
.+ +++ +||-+|+|. |.++..+++ . |..|++ ++.++..++.+++.|...++.... .+. ... ...+|+|
T Consensus 168 ~~-~g~--~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~v 242 (344)
T 2h6e_A 168 KF-AEP--VVIVNGIGGLAVYTIQILKALMKNITIVG--ISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIA 242 (344)
T ss_dssp TC-SSC--EEEEECCSHHHHHHHHHHHHHCTTCEEEE--ECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred CC-CCC--EEEEECCCHHHHHHHHHHHHhcCCCEEEE--EeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEE
Confidence 56 776 899999864 666767665 4 788888 566677777777766422322111 110 011 2379999
Q ss_pred EeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+-.-.- ...+....++|+|||.+++..
T Consensus 243 id~~g~---------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 243 IDLVGT---------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp EESSCC---------HHHHHHHHHHEEEEEEEEECC
T ss_pred EECCCC---------hHHHHHHHHHhhcCCEEEEeC
Confidence 976554 247888899999999988753
No 351
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=88.34 E-value=0.92 Score=44.29 Aligned_cols=95 Identities=16% Similarity=0.020 Sum_probs=58.5
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||-.|+ |.|..+..++. .|.+|++++ .++..++.+.+.+....+......+. ...+.+|
T Consensus 136 ~~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 136 YEIKPDE--QFLFHAAAGGVGLIACQWAKALGAKLIGTV--GTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp SCCCTTC--EEEESSTTBHHHHHHHHHHHHHTCEEEEEE--SSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred hCCCCCC--EEEEECCCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 3456666 8999994 45666666555 488998854 45555666665553222221111110 1134699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+....+.|++||.+++..
T Consensus 212 ~vi~~~g~----------~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 212 VVYDSVGR----------DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEECSCG----------GGHHHHHHTEEEEEEEEECC
T ss_pred EEEECCch----------HHHHHHHHHhcCCCEEEEEe
Confidence 99876542 35778889999999988754
No 352
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=88.02 E-value=2.9 Score=40.95 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=61.1
Q ss_pred HhcCCCCCCceEEEECCCcc-HHHHHHhh-C-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVGTG-TFAARMRE-Q-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGtG-~~a~~La~-~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sF 380 (467)
...+++++ +||=+|+|.+ .++..+++ . +.+|++ ++.++..++.+.+.+...++.....++. .....+
T Consensus 158 ~~~~~~g~--~VlV~GaG~~g~~a~~~a~~~~g~~Vi~--~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~ 233 (348)
T 4eez_A 158 VSGVKPGD--WQVIFGAGGLGNLAIQYAKNVFGAKVIA--VDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGV 233 (348)
T ss_dssp HHTCCTTC--EEEEECCSHHHHHHHHHHHHTSCCEEEE--EESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCE
T ss_pred ccCCCCCC--EEEEEcCCCccHHHHHHHHHhCCCEEEE--EECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCc
Confidence 44567777 8899999864 45555554 3 788988 5556666777777775333332222111 123346
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|.++....- ...+....+.|+++|.+++..
T Consensus 234 d~~~~~~~~---------~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 234 QSAIVCAVA---------RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEECCSC---------HHHHHHHHHTEEEEEEEEECC
T ss_pred eEEEEeccC---------cchhheeheeecCCceEEEEe
Confidence 666654333 357888999999999988753
No 353
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=87.83 E-value=1.9 Score=41.97 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=61.0
Q ss_pred HHhcCCCCCCceEEEEC-CC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC-CccCCCccceEE
Q 012235 309 DILAIKPGETRIGLDFG-VG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR-LPFFDNTMDLIH 384 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIG-CG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~-Lpf~d~sFDlVi 384 (467)
....+.+++ +||=+| +| .|..+..+++. |.+|++++ +....+.+.+.|.-.++.....+ +.-.-+.+|+|+
T Consensus 146 ~~~~~~~g~--~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~ 220 (321)
T 3tqh_A 146 NQAEVKQGD--VVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVI 220 (321)
T ss_dssp HHTTCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred HhcCCCCCC--EEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEE
Confidence 455677787 889886 44 57777777765 88888854 34446667666643333322222 211125689988
Q ss_pred eccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 385 TTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 385 s~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
-.-.- ..+.+..++|++||.++..
T Consensus 221 d~~g~----------~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 221 DLVGG----------DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp ESSCH----------HHHHHHGGGEEEEEEEEEC
T ss_pred ECCCc----------HHHHHHHHhccCCCEEEEe
Confidence 65443 2347889999999998874
No 354
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=87.72 E-value=0.6 Score=46.27 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=52.9
Q ss_pred ccEEEccCCC-Cc-cCCCccceEEeccccccc-----cc------hhhHHHHHHHHHhccCCCcEEEEEeccc--CC---
Q 012235 363 IPLYVTLNQR-LP-FFDNTMDLIHTTGFMDGW-----LD------MLLLDFILFDWDRILRPGGLLWIDRFFC--NK--- 424 (467)
Q Consensus 363 i~~~~~d~~~-Lp-f~d~sFDlVis~~~L~h~-----~~------~~~l~~~L~el~RvLKPGG~LiI~~~~~--~~--- 424 (467)
..++++|+.. +. +++++||+|++.-....- .+ ...+...+.++.|+|||||.+++..-.. ..
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 4577787543 33 457899999998654211 00 0125678999999999999998854321 11
Q ss_pred ---CCHHHHHHHHHHcCceee---EEEE
Q 012235 425 ---KDLDDYMYMFLQFRYKKH---KWAI 446 (467)
Q Consensus 425 ---~~~~~~~~~i~~~Gf~~l---~W~~ 446 (467)
.....+.++++..||... -|..
T Consensus 95 ~~~~~~~~i~~~~~~~Gf~~~~~iiW~k 122 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGFFLAEDFYWFN 122 (323)
T ss_dssp ECCHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cccchHHHHHHHHHhCCCEEEEEEEEec
Confidence 012345566788898543 4754
No 355
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=87.69 E-value=1.6 Score=43.53 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCCceEEEEC-CC-ccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC-----ccCCCccceEEe
Q 012235 315 PGETRIGLDFG-VG-TGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-----PFFDNTMDLIHT 385 (467)
Q Consensus 315 ~g~~r~VLDIG-CG-tG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-----pf~d~sFDlVis 385 (467)
+++ +||=+| +| .|.++..+++. |.+|++ ++.++..++.+.+.|.-.++.. ...+ ....+.+|+|+-
T Consensus 171 ~g~--~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~--~~~~~~~~~~~~~lGad~vi~~-~~~~~~~v~~~~~~g~Dvvid 245 (363)
T 4dvj_A 171 AAP--AILIVGGAGGVGSIAVQIARQRTDLTVIA--TASRPETQEWVKSLGAHHVIDH-SKPLAAEVAALGLGAPAFVFS 245 (363)
T ss_dssp SEE--EEEEESTTSHHHHHHHHHHHHHCCSEEEE--ECSSHHHHHHHHHTTCSEEECT-TSCHHHHHHTTCSCCEEEEEE
T ss_pred CCC--EEEEECCCCHHHHHHHHHHHHhcCCEEEE--EeCCHHHHHHHHHcCCCEEEeC-CCCHHHHHHHhcCCCceEEEE
Confidence 454 889888 44 57888888874 788988 5566667777777664222221 1111 112457999886
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...- ...+.+..++|++||.+++.
T Consensus 246 ~~g~---------~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 246 TTHT---------DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp CSCH---------HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCc---------hhhHHHHHHHhcCCCEEEEE
Confidence 5443 35788899999999999875
No 356
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=87.63 E-value=2.6 Score=41.72 Aligned_cols=100 Identities=11% Similarity=0.011 Sum_probs=64.7
Q ss_pred CceEEEECCCccHHHHHHhh-CCCEEEEEecCCCHHHHHH----HHH-----cCCccEEEccCCCCc---------cCCC
Q 012235 318 TRIGLDFGVGTGTFAARMRE-QNVTIVSTALNLGAPFNEM----IAL-----RGLIPLYVTLNQRLP---------FFDN 378 (467)
Q Consensus 318 ~r~VLDIGCGtG~~a~~La~-~g~~V~gvdiDiS~~~l~~----a~~-----rg~i~~~~~d~~~Lp---------f~d~ 378 (467)
++.|+++|||.=+.+.++.. .+..++. +|. +..++. +.+ .+...++.+|+.+ . +...
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~e--vD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYE--IDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEE--EEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEE--cCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 45799999999999888873 3566666 553 333322 221 1224566677654 2 1112
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
.-=++++-.++ ++.+++....++..+...+.||+++++.....
T Consensus 179 ~Pt~~i~Egvl-~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 179 ARTAWLAEGLL-MYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp SCEEEEECSCG-GGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCEEEEEechH-hhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 23355566666 67666677889999999999999988876543
No 357
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=87.61 E-value=1.4 Score=43.51 Aligned_cols=95 Identities=13% Similarity=0.021 Sum_probs=60.2
Q ss_pred cEE-EccCCCCccCCCccceEEecccc----cccc---ch-hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHH
Q 012235 364 PLY-VTLNQRLPFFDNTMDLIHTTGFM----DGWL---DM-LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMF 434 (467)
Q Consensus 364 ~~~-~~d~~~Lpf~d~sFDlVis~~~L----~h~~---~~-~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i 434 (467)
.+. ..|... |-..+.+|+|++..+. +|+. +. ..+.-++....++|+|||.|++-.|...+...+.++..+
T Consensus 191 t~~~~lDfg~-p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~L 269 (320)
T 2hwk_A 191 TFRARLDLGI-PGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAI 269 (320)
T ss_dssp SEECCGGGCS-CTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHH
T ss_pred eeecccccCC-ccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHH
Confidence 344 444433 3223679999997654 2322 21 112235677889999999999988766543445788888
Q ss_pred HHcCceeeEEEEccC--CCCceEEEEEe
Q 012235 435 LQFRYKKHKWAISPK--SKDEVYLSALL 460 (467)
Q Consensus 435 ~~~Gf~~l~W~~~~k--~~devyl~avl 460 (467)
++. |+.++-...+- .+.|+|+.+.-
T Consensus 270 aR~-F~~Vr~vKP~ASR~StEvf~La~g 296 (320)
T 2hwk_A 270 ARQ-FKFSRVCKPKSSLEETEVLFVFIG 296 (320)
T ss_dssp HTT-EEEEEEECCTTCCSTTCEEEEEEE
T ss_pred HHh-cceeeeeCCCCccccceEEEEEEe
Confidence 877 88876543322 46788887754
No 358
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=87.46 E-value=1.4 Score=43.29 Aligned_cols=115 Identities=12% Similarity=-0.001 Sum_probs=77.5
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCC-Cc---cCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQR-LP---FFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~-Lp---f~d~sFDlVis~~~L~h 391 (467)
.+||+=+|+|.++..+.+.+..++. +|..+...+.++++ ..+.++..|... +. -+...||+|+..-...
T Consensus 94 ~~LDlfaGSGaLgiEaLS~~d~~vf--vE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe- 170 (283)
T 2oo3_A 94 STLSYYPGSPYFAINQLRSQDRLYL--CELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYE- 170 (283)
T ss_dssp SSCCEEECHHHHHHHHSCTTSEEEE--ECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCC-
T ss_pred CceeEeCCcHHHHHHHcCCCCeEEE--EeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCC-
Confidence 5799999999999999998877887 66666666666543 236777777433 22 2234699999988773
Q ss_pred ccchhhHHHHHHHHHh--ccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 392 WLDMLLLDFILFDWDR--ILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 392 ~~~~~~l~~~L~el~R--vLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
..+ ..+.++..+.+ .+.|+|.+++=-+.-.+...+.+.+.+++.|.
T Consensus 171 ~k~--~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 171 RKE--EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS 218 (283)
T ss_dssp STT--HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred CCc--HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence 211 23455655554 45699998885454455455567777776666
No 359
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=87.23 E-value=1.3 Score=45.65 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=61.5
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc--------------
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-------------- 374 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-------------- 374 (467)
.+++++ +||=+|+ |.|.++..+++. |..+++++ .++..++.+++.|...++.....++.
T Consensus 225 ~~~~g~--~VlV~GasG~vG~~avqlak~~Ga~vi~~~--~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~ 300 (456)
T 3krt_A 225 GMKQGD--NVLIWGASGGLGSYATQFALAGGANPICVV--SSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWK 300 (456)
T ss_dssp CCCTTC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHH
T ss_pred CCCCCC--EEEEECCCCHHHHHHHHHHHHcCCeEEEEE--CCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHH
Confidence 456676 8999987 457777777765 88888854 46777777777675333332221110
Q ss_pred ---------cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 375 ---------FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 375 ---------f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.....+|+|+-.-.- ..+....++|++||.+++.
T Consensus 301 ~~~~~i~~~t~g~g~Dvvid~~G~----------~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 301 RFGKRIRELTGGEDIDIVFEHPGR----------ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHTSCCEEEEEECSCH----------HHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHhCCCCCcEEEEcCCc----------hhHHHHHHHhhCCcEEEEE
Confidence 112479998865432 4677888999999999874
No 360
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=87.14 E-value=0.68 Score=46.06 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=59.0
Q ss_pred hcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCC-CCc--cCCCccceEEe
Q 012235 311 LAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ-RLP--FFDNTMDLIHT 385 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~-~Lp--f~d~sFDlVis 385 (467)
..+.+++ +||-+|+|. |.++..+++. |..|++++. ++..++.+++.|...++..... ++. .. +.+|+|+-
T Consensus 175 ~~~~~g~--~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~--~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~-~~~D~vid 249 (360)
T 1piw_A 175 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVISR--SSRKREDAMKMGADHYIATLEEGDWGEKYF-DTFDLIVV 249 (360)
T ss_dssp TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEEES--SSTTHHHHHHHTCSEEEEGGGTSCHHHHSC-SCEEEEEE
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEcC--CHHHHHHHHHcCCCEEEcCcCchHHHHHhh-cCCCEEEE
Confidence 4667777 899999863 6777777765 888888554 4445566666664333322211 110 11 47999986
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
...-. .. ..+.+..++|++||.++..
T Consensus 250 ~~g~~---~~----~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 250 CASSL---TD----IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CCSCS---TT----CCTTTGGGGEEEEEEEEEC
T ss_pred CCCCC---cH----HHHHHHHHHhcCCCEEEEe
Confidence 54320 00 2355667899999998764
No 361
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=86.81 E-value=0.49 Score=45.79 Aligned_cols=91 Identities=16% Similarity=0.028 Sum_probs=56.7
Q ss_pred CCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccC-CCCccCCCccceEEeccc
Q 012235 313 IKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLN-QRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 313 l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~-~~Lpf~d~sFDlVis~~~ 388 (467)
+++++ +||-+|+ |.|..+..+++. |.+|++++. ++..++.+.+.|...++.... .++.-.-+.+|+|+. ..
T Consensus 123 ~~~g~--~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g 197 (302)
T 1iz0_A 123 ARPGE--KVLVQAAAGALGTAAVQVARAMGLRVLAAAS--RPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VR 197 (302)
T ss_dssp CCTTC--EEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CS
T ss_pred CCCCC--EEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CC
Confidence 66676 8999997 456777777654 889988554 455556666555322222111 111100156899987 33
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
- ..+....+.|+++|.++..
T Consensus 198 ~----------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 198 G----------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp C----------TTHHHHHTTEEEEEEEEEC
T ss_pred H----------HHHHHHHHhhccCCEEEEE
Confidence 2 2467888999999998874
No 362
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=86.72 E-value=1 Score=44.64 Aligned_cols=95 Identities=17% Similarity=0.004 Sum_probs=60.4
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccce
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDl 382 (467)
..+++++ +||-+|+ |.|..+..+++. |.+|++ .+.++..++.+.+.+....+.....++. ...+.+|+
T Consensus 163 ~~~~~g~--~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 163 AGLTEGE--SVLIHGGTSGIGTTAIQLARAFGAEVYA--TAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEE--EESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred cCCCCCC--EEEEEcCCCHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 4466676 8998853 356666666654 899888 4555666777776664333322222111 11357999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+.+..- ..+....+.|++||.+++..
T Consensus 239 vid~~g~----------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 239 ILDMIGA----------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEESCCG----------GGHHHHHHTEEEEEEEEECC
T ss_pred EEECCCH----------HHHHHHHHHhccCCEEEEEE
Confidence 9876553 24677788999999988753
No 363
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=86.70 E-value=4.8 Score=39.30 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=63.9
Q ss_pred HHhcCCCCCCceEEEECCCc-cHHHHHHhhC-CCEE-EEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCc
Q 012235 309 DILAIKPGETRIGLDFGVGT-GTFAARMREQ-NVTI-VSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNT 379 (467)
Q Consensus 309 ~lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~~V-~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~s 379 (467)
......+++ +||=.|+|. |.++..+++. |..+ ++ ++.++..++.+++.|....+.......+ ...+.
T Consensus 154 ~~~~~~~g~--~VlV~GaG~vG~~aiq~ak~~G~~~vi~--~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 154 HLAQGCENK--NVIIIGAGTIGLLAIQCAVALGAKSVTA--IDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp HHTTCCTTS--EEEEECCSHHHHHHHHHHHHTTCSEEEE--EESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCS
T ss_pred HHhccCCCC--EEEEECCCCcchHHHHHHHHcCCcEEEE--EechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCC
Confidence 444566776 889899875 4566666655 6554 55 5667777888888775444443322211 12345
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+|+-...- ...+....++|++||.+++...
T Consensus 230 ~d~v~d~~G~---------~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 230 NQLILETAGV---------PQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp SEEEEECSCS---------HHHHHHHHHHCCTTCEEEECCC
T ss_pred cccccccccc---------cchhhhhhheecCCeEEEEEec
Confidence 7887765443 3578888999999999988543
No 364
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=86.35 E-value=1.5 Score=42.82 Aligned_cols=95 Identities=18% Similarity=0.081 Sum_probs=58.4
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||-.|+ |.|..+..++. .|..|++++ .++..++.+.+.+....+......+. .....+|
T Consensus 141 ~~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~--~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 141 HKVKPGD--YVLIHAAAGGMGHIMVPWARHLGATVIGTV--STEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp SCCCTTC--EEEETTTTSTTHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred hCCCCCC--EEEEECCccHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 3456666 8999995 56766666654 488988854 45555666655553222221111110 1124699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+..- ..+....+.|++||.++...
T Consensus 217 ~vi~~~g~----------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 217 VVYDSIGK----------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp EEEECSCT----------TTHHHHHHTEEEEEEEEECC
T ss_pred EEEECCcH----------HHHHHHHHhhccCCEEEEEe
Confidence 99876542 24677889999999988754
No 365
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=86.14 E-value=1.3 Score=43.86 Aligned_cols=96 Identities=14% Similarity=-0.018 Sum_probs=58.4
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhh-CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMRE-QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~-~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||-.|+ |.|..+..++. .|..|+++ +.++..++.+.+.+....+......+. ...+.+|
T Consensus 158 ~~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 233 (354)
T 2j8z_A 158 GNVQAGD--YVLIHAGLSGVGTAAIQLTRMAGAIPLVT--AGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVN 233 (354)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred cCCCCCC--EEEEECCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCce
Confidence 3456666 8999984 45666655554 48898884 455666666655553222221111110 1124699
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+.+..- ..+.+..++|++||.+++...
T Consensus 234 ~vi~~~G~----------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 234 LILDCIGG----------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEEESSCG----------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCCc----------hHHHHHHHhccCCCEEEEEec
Confidence 99876653 146677899999999887543
No 366
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=85.86 E-value=3.1 Score=41.52 Aligned_cols=92 Identities=14% Similarity=0.021 Sum_probs=60.6
Q ss_pred CCCCCceEEEECCC--ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccceEEe
Q 012235 314 KPGETRIGLDFGVG--TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDLIHT 385 (467)
Q Consensus 314 ~~g~~r~VLDIGCG--tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDlVis 385 (467)
.+++ +||=+|++ .|..+..+++. |..|+++. ++..++.+++.|...++.....++. ..++.+|+|+-
T Consensus 163 ~~g~--~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d 237 (371)
T 3gqv_A 163 SKPV--YVLVYGGSTATATVTMQMLRLSGYIPIATC---SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALD 237 (371)
T ss_dssp SSCC--EEEEESTTSHHHHHHHHHHHHTTCEEEEEE---CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred CCCc--EEEEECCCcHHHHHHHHHHHHCCCEEEEEe---CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEE
Confidence 5565 89999983 67888888865 88888853 4566777777774334433222211 12345999986
Q ss_pred ccccccccchhhHHHHHHHHHhcc-CCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRIL-RPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvL-KPGG~LiI~~ 419 (467)
.-.- ...+....+.| ++||.++...
T Consensus 238 ~~g~---------~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 238 CITN---------VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp SSCS---------HHHHHHHHHHSCTTCEEEEESS
T ss_pred CCCc---------hHHHHHHHHHhhcCCCEEEEEe
Confidence 5543 25677888888 6999988743
No 367
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=85.57 E-value=2.1 Score=42.29 Aligned_cols=97 Identities=9% Similarity=-0.034 Sum_probs=59.0
Q ss_pred HHhcCCCC--CCceEEEECC--CccHHHHHHhh-CCC-EEEEEecCCCHHHHHHHHH-cCCccEEEccCCCCc-----cC
Q 012235 309 DILAIKPG--ETRIGLDFGV--GTGTFAARMRE-QNV-TIVSTALNLGAPFNEMIAL-RGLIPLYVTLNQRLP-----FF 376 (467)
Q Consensus 309 ~lL~l~~g--~~r~VLDIGC--GtG~~a~~La~-~g~-~V~gvdiDiS~~~l~~a~~-rg~i~~~~~d~~~Lp-----f~ 376 (467)
+...+.++ + +||-.|+ |.|..+..++. .|. .|+++ +.++..++.+.+ .+....+......+. ..
T Consensus 152 ~~~~~~~g~~~--~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 152 EKGHITAGSNK--TMVVSGAAGACGSVAGQIGHFLGCSRVVGI--CGTHEKCILLTSELGFDAAINYKKDNVAEQLRESC 227 (357)
T ss_dssp HHSCCCTTSCC--EEEESSTTBHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHC
T ss_pred HhcCCCCCCcc--EEEEECCCcHHHHHHHHHHHHCCCCeEEEE--eCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhc
Confidence 34456677 6 8999997 44555555554 488 89884 445555666655 443222221111110 11
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.+.+|+|+.+..- ..+....++|++||.+++..
T Consensus 228 ~~~~d~vi~~~G~----------~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 228 PAGVDVYFDNVGG----------NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp TTCEEEEEESCCH----------HHHHHHHHTEEEEEEEEECC
T ss_pred CCCCCEEEECCCH----------HHHHHHHHHhccCcEEEEEC
Confidence 2268998876552 46788889999999988753
No 368
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=85.25 E-value=3.2 Score=35.30 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=65.3
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEecccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~ 393 (467)
+|+=+|+|. | .++..|.+.|..|+. +|.++...+.+.+.+ +.++.+|..+... .-...|+|+....-
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~v--id~~~~~~~~~~~~g-~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~---- 81 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVV--IETSRTRVDELRERG-VRAVLGNAANEEIMQLAHLECAKWLILTIPN---- 81 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEE--EESCHHHHHHHHHTT-CEEEESCTTSHHHHHHTTGGGCSEEEECCSC----
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEE--EECCHHHHHHHHHcC-CCEEECCCCCHHHHHhcCcccCCEEEEECCC----
Confidence 688899875 4 445566667999999 455566677776655 5678887654321 12468888865432
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
+. ....+....|.+.|+..++.-. ......+.++++|...
T Consensus 82 -~~-~n~~~~~~a~~~~~~~~iiar~------~~~~~~~~l~~~G~d~ 121 (140)
T 3fwz_A 82 -GY-EAGEIVASARAKNPDIEIIARA------HYDDEVAYITERGANQ 121 (140)
T ss_dssp -HH-HHHHHHHHHHHHCSSSEEEEEE------SSHHHHHHHHHTTCSE
T ss_pred -hH-HHHHHHHHHHHHCCCCeEEEEE------CCHHHHHHHHHCCCCE
Confidence 11 1123445667778888765522 1124556777777654
No 369
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=84.97 E-value=0.93 Score=44.68 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=56.9
Q ss_pred HhcCCCCCCceEEEECCCc-cHHHHHHhhC-CC-EEEEEecCCCHHHHHHHHHcCCccEEEc-cCCCCc-----cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGVGT-GTFAARMREQ-NV-TIVSTALNLGAPFNEMIALRGLIPLYVT-LNQRLP-----FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGCGt-G~~a~~La~~-g~-~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~~~Lp-----f~d~sF 380 (467)
...+ +++ +||-+|+|. |..+..+++. |. +|++ ++.++..++.+.+. ...+.. ...++. ...+.+
T Consensus 160 ~~~~-~g~--~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~--~~~~~~~~~~~~~l--a~~v~~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 160 GSGV-SGK--SVLITGAGPIGLMAAMVVRASGAGPILV--SDPNPYRLAFARPY--ADRLVNPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTCC-TTS--CEEEECCSHHHHHHHHHHHHTTCCSEEE--ECSCHHHHGGGTTT--CSEEECTTTSCHHHHHHHHHSSCE
T ss_pred hCCC-CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEE--ECCCHHHHHHHHHh--HHhccCcCccCHHHHHHHhcCCCC
Confidence 3456 666 899999853 6677777764 88 8888 44555544444332 222211 111110 013469
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
|+|+-...- ...+.+..+.|+++|.+++.
T Consensus 233 D~vid~~g~---------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 233 EVLLEFSGN---------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp EEEEECSCC---------HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCC---------HHHHHHHHHHHhcCCEEEEE
Confidence 999866543 25678889999999998875
No 370
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=84.80 E-value=2.4 Score=43.40 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=60.8
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCC--------------
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRL-------------- 373 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~L-------------- 373 (467)
..+.+++ +||=+|+ |.|..+..+++. |..++.++ .++..++.+++.|...++.....++
T Consensus 216 ~~~~~g~--~VlV~GasG~iG~~a~qla~~~Ga~vi~~~--~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~ 291 (447)
T 4a0s_A 216 AQMKQGD--IVLIWGASGGLGSYAIQFVKNGGGIPVAVV--SSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVET 291 (447)
T ss_dssp TCCCTTC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred cCCCCCC--EEEEECCCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHhcCCCEEEecccccccccccccccccchh
Confidence 3456666 8999986 346677777665 88888854 5667777777666433332211111
Q ss_pred ---------ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 374 ---------PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 374 ---------pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
....+.+|+|+-+..- ..+....+.|++||.+++..
T Consensus 292 ~~~~~~~v~~~~g~g~Dvvid~~G~----------~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 292 GRKLAKLVVEKAGREPDIVFEHTGR----------VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECSCH----------HHHHHHHHHSCTTCEEEESC
T ss_pred hhHHHHHHHHHhCCCceEEEECCCc----------hHHHHHHHHHhcCCEEEEEe
Confidence 0013468999875543 35677888999999988753
No 371
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=84.21 E-value=1.6 Score=43.14 Aligned_cols=91 Identities=16% Similarity=0.043 Sum_probs=60.0
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMD 381 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFD 381 (467)
..+.+++ +||-+|+ |.|..+..+++. |..|+++ .++..++.+++.|... +. ...++. .....+|
T Consensus 146 ~~~~~g~--~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~---~~~~~~~~~~~lGa~~-i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 146 AQVQDGQ--TVLIQGGGGGVGHVAIQIALARGARVFAT---ARGSDLEYVRDLGATP-ID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp TCCCTTC--EEEEETTTSHHHHHHHHHHHHTTCEEEEE---ECHHHHHHHHHHTSEE-EE-TTSCHHHHHHHHHTTSCEE
T ss_pred cCCCCCC--EEEEecCCCHHHHHHHHHHHHCCCEEEEE---eCHHHHHHHHHcCCCE-ec-cCCCHHHHHHHHhcCCCce
Confidence 4566676 8999994 357777777765 8898885 4556677777666422 32 222211 1234799
Q ss_pred eEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 382 LIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 382 lVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+-+..- ..+....+.|+++|.+++.
T Consensus 219 ~vid~~g~----------~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 219 LVYDTLGG----------PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp EEEESSCT----------HHHHHHHHHEEEEEEEEES
T ss_pred EEEECCCc----------HHHHHHHHHHhcCCeEEEE
Confidence 99865442 3677888999999998874
No 372
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=83.82 E-value=2.4 Score=41.79 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=57.6
Q ss_pred CCCCceEEEEC-CC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCccceEEec
Q 012235 315 PGETRIGLDFG-VG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTMDLIHTT 386 (467)
Q Consensus 315 ~g~~r~VLDIG-CG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sFDlVis~ 386 (467)
+++ +||=+| +| .|..+..+++. |.+|++ ++.++..++.+.+.|.-.++... ..+. ...+.+|+|+-.
T Consensus 150 ~g~--~VlV~gg~G~vG~~a~qla~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~vi~~~-~~~~~~~~~~~~~g~Dvv~d~ 224 (346)
T 3fbg_A 150 EGK--TLLIINGAGGVGSIATQIAKAYGLRVIT--TASRNETIEWTKKMGADIVLNHK-ESLLNQFKTQGIELVDYVFCT 224 (346)
T ss_dssp TTC--EEEEESTTSHHHHHHHHHHHHTTCEEEE--ECCSHHHHHHHHHHTCSEEECTT-SCHHHHHHHHTCCCEEEEEES
T ss_pred CCC--EEEEEcCCCHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHhcCCcEEEECC-ccHHHHHHHhCCCCccEEEEC
Confidence 566 888884 43 46777777664 889988 55566777777776642222211 1110 123469999875
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
..- ...+....++|++||.++.
T Consensus 225 ~g~---------~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 225 FNT---------DMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp SCH---------HHHHHHHHHHEEEEEEEEE
T ss_pred CCc---------hHHHHHHHHHhccCCEEEE
Confidence 443 3567888999999999865
No 373
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=83.48 E-value=3.9 Score=44.40 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=46.4
Q ss_pred ccEEEccCCC-Ccc----CCCccceEEecccc-----ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHH
Q 012235 363 IPLYVTLNQR-LPF----FDNTMDLIHTTGFM-----DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMY 432 (467)
Q Consensus 363 i~~~~~d~~~-Lpf----~d~sFDlVis~~~L-----~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~ 432 (467)
+.++.+|+.. ++- .++.+|.++....- +.|. ..++..+.++++|||.+.- +.+. ..+.+
T Consensus 150 l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~-----~~~~~~l~~~~~~g~~~~t--~~~~----~~vr~ 218 (689)
T 3pvc_A 150 LDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWN-----EQLFNAMARMTRPGGTFST--FTAA----GFVRR 218 (689)
T ss_dssp EEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCS-----HHHHHHHHHHEEEEEEEEE--SCCC----HHHHH
T ss_pred EEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhh-----HHHHHHHHHHhCCCCEEEe--ccCc----HHHHH
Confidence 3455666432 221 14689999874321 1232 4689999999999998554 4333 36778
Q ss_pred HHHHcCceeeEEE
Q 012235 433 MFLQFRYKKHKWA 445 (467)
Q Consensus 433 ~i~~~Gf~~l~W~ 445 (467)
.+.+.||..-++.
T Consensus 219 ~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 219 GLQQAGFNVTKVK 231 (689)
T ss_dssp HHHHTTCEEEEEE
T ss_pred HHHhCCeEEEecc
Confidence 8899999766554
No 374
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=83.06 E-value=6.9 Score=42.24 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=39.6
Q ss_pred CCccceEEeccccccccchhh-HHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 377 DNTMDLIHTTGFMDGWLDMLL-LDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~-l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
...||+++....- .-.+++. -..++..+.++++|||.+.. +... ..+.+.+.+.||..-+.
T Consensus 177 ~~~~d~~~~D~f~-p~~np~~w~~~~~~~l~~~~~~g~~~~t--~~~~----~~vr~~L~~aGf~v~~~ 238 (676)
T 3ps9_A 177 NQKVDAWFLDGFA-PAKNPDMWTQNLFNAMARLARPGGTLAT--FTSA----GFVRRGLQDAGFTMQKR 238 (676)
T ss_dssp TTCEEEEEECCSC-GGGCGGGSCHHHHHHHHHHEEEEEEEEE--SCCC----HHHHHHHHHHTCEEEEE
T ss_pred CCcccEEEECCCC-CcCChhhhhHHHHHHHHHHhCCCCEEEe--ccCc----HHHHHHHHhCCeEEEec
Confidence 4679999974321 1111110 14689999999999998654 3333 36778888999976554
No 375
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=82.98 E-value=2.3 Score=41.22 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=57.6
Q ss_pred eEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCC--CccCCCccceEEeccccccccc
Q 012235 320 IGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQR--LPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~--Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.||=+|+ |.|..+..+++. |.+|++++ .++...+.+.+.|.-.++...... .....+.+|+|+-.-.-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~--~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~----- 221 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVS--GRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGD----- 221 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEE--SCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCH-----
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCc-----
Confidence 3888886 467888888765 88999854 456667777776643333221111 11234578988764332
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 395 MLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.+..+.|+|+|.+++..
T Consensus 222 -----~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 222 -----KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp -----HHHHHHHHTEEEEEEEEECC
T ss_pred -----HHHHHHHHHHhcCCEEEEEe
Confidence 37888999999999998754
No 376
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=82.70 E-value=20 Score=34.43 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred eEEEECCCccHHHHHHhh---------CCCEEEEEe-----cCCCH--------------------HHHHHHH---H---
Q 012235 320 IGLDFGVGTGTFAARMRE---------QNVTIVSTA-----LNLGA--------------------PFNEMIA---L--- 359 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~---------~g~~V~gvd-----iDiS~--------------------~~l~~a~---~--- 359 (467)
.|+++|+-.|..+..++. ..-+++++| ++.++ ..++.+. +
T Consensus 72 ~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~ 151 (257)
T 3tos_A 72 VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSD 151 (257)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTS
T ss_pred eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhh
Confidence 699999999987766543 135788876 33211 1122211 1
Q ss_pred -----cCCccEEEccCCC-Cc-----cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEeccc
Q 012235 360 -----RGLIPLYVTLNQR-LP-----FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFC 422 (467)
Q Consensus 360 -----rg~i~~~~~d~~~-Lp-----f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~ 422 (467)
...+.++.+++.+ +| .+..+||+|+...-. +.+ ....+..+...|+|||+++++++..
T Consensus 152 ~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~---t~~~le~~~p~l~~GGvIv~DD~~~ 220 (257)
T 3tos_A 152 FFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEP---TKAVLEAIRPYLTKGSIVAFDELDN 220 (257)
T ss_dssp TTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHH---HHHHHHHHGGGEEEEEEEEESSTTC
T ss_pred hcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cch---HHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 1337788888543 33 234579999987743 222 2467889999999999999999754
No 377
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=82.29 E-value=2 Score=42.67 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=55.0
Q ss_pred CCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCC-HHHHHHHHHcCCccEEEccCCCCccC------CCccceEEec
Q 012235 316 GETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLG-APFNEMIALRGLIPLYVTLNQRLPFF------DNTMDLIHTT 386 (467)
Q Consensus 316 g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS-~~~l~~a~~rg~i~~~~~d~~~Lpf~------d~sFDlVis~ 386 (467)
++ +||-+|+|. |..+..+++. |..|++++.+.. ....+.+.+.|. ..+ + .. .+. .+.+|+|+.+
T Consensus 181 g~--~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga-~~v--~-~~-~~~~~~~~~~~~~d~vid~ 253 (366)
T 2cdc_A 181 CR--KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKT-NYY--N-SS-NGYDKLKDSVGKFDVIIDA 253 (366)
T ss_dssp TC--EEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTC-EEE--E-CT-TCSHHHHHHHCCEEEEEEC
T ss_pred CC--EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCC-cee--c-hH-HHHHHHHHhCCCCCEEEEC
Confidence 66 899999842 4555555544 889988654430 044566665553 222 2 22 211 1469999876
Q ss_pred cccccccchhhHHHHH-HHHHhccCCCcEEEEEec
Q 012235 387 GFMDGWLDMLLLDFIL-FDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L-~el~RvLKPGG~LiI~~~ 420 (467)
... ...+ .+..+.|++||.+++...
T Consensus 254 ~g~---------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 254 TGA---------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp CCC---------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred CCC---------hHHHHHHHHHHHhcCCEEEEEec
Confidence 554 1255 888999999999887543
No 378
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=79.44 E-value=2 Score=41.78 Aligned_cols=88 Identities=17% Similarity=0.119 Sum_probs=53.8
Q ss_pred eEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEcc-C--CCC-ccCCCccceEEeccccccc
Q 012235 320 IGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTL-N--QRL-PFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d-~--~~L-pf~d~sFDlVis~~~L~h~ 392 (467)
+||-+|+ |.|..+..+++. |..|++++. ++..++.+++.|.-.++... . ... ....+.+|+|+-...-
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~--~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~--- 226 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTG--KAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG--- 226 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEES--CTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT---
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH---
Confidence 6899997 567777777765 888888554 34445666665532222211 1 001 1223468998865432
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.+..+.|++||.+++..
T Consensus 227 -------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 227 -------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp -------TTHHHHHHTEEEEEEEEECS
T ss_pred -------HHHHHHHHhhccCCEEEEEe
Confidence 24667889999999988753
No 379
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=79.15 E-value=3.4 Score=40.21 Aligned_cols=88 Identities=15% Similarity=0.042 Sum_probs=55.0
Q ss_pred eEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEc-cC--CCC-ccCCCccceEEeccccccc
Q 012235 320 IGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVT-LN--QRL-PFFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~-d~--~~L-pf~d~sFDlVis~~~L~h~ 392 (467)
+||-+|+ |.|..+..+++. |..|++++.+ +..++.+.+.|.-.++.. +. ... ....+.+|+|+-...-
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~--~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~--- 227 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGN--REAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG--- 227 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESS--SSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT---
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcH---
Confidence 6899997 456777777765 8888885544 344555655554222221 11 111 1223468998865442
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.+..+.|++||.+++..
T Consensus 228 -------~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 228 -------KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp -------HHHHHHHTTEEEEEEEEECC
T ss_pred -------HHHHHHHHhhcCCCEEEEEe
Confidence 35778889999999988754
No 380
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=79.09 E-value=2.2 Score=42.31 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=56.6
Q ss_pred hcCC-CCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHH-HcCCccEEEccC-CCCccCCCccceEEe
Q 012235 311 LAIK-PGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIA-LRGLIPLYVTLN-QRLPFFDNTMDLIHT 385 (467)
Q Consensus 311 L~l~-~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~-~rg~i~~~~~d~-~~Lpf~d~sFDlVis 385 (467)
..+. +++ +||=+|+|. |.++..+++. |..|++++. ++..++.+. +.|.-.++.... ..+.-..+.+|+|+-
T Consensus 175 ~~~~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid 250 (357)
T 2cf5_A 175 FGLKQPGL--RGGILGLGGVGHMGVKIAKAMGHHVTVISS--SNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVID 250 (357)
T ss_dssp TSTTSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEEES--STTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEE
T ss_pred cCCCCCCC--EEEEECCCHHHHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEE
Confidence 3555 676 889898763 5666666655 888888554 444455555 444323332211 111101246899986
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
.-.-. ..+....++|+|||.+++..
T Consensus 251 ~~g~~---------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 251 TVPVH---------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp CCCSC---------CCSHHHHTTEEEEEEEEECS
T ss_pred CCCCh---------HHHHHHHHHhccCCEEEEeC
Confidence 54421 23556778999999988753
No 381
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=78.21 E-value=12 Score=36.79 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=56.6
Q ss_pred hcCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEe-cCCC-HHHHHHHHHcCCccEEEcc---CCCCc-cCC--Cc
Q 012235 311 LAIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTA-LNLG-APFNEMIALRGLIPLYVTL---NQRLP-FFD--NT 379 (467)
Q Consensus 311 L~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvd-iDiS-~~~l~~a~~rg~i~~~~~d---~~~Lp-f~d--~s 379 (467)
..+.+++ +||=+|+ |.|.++..+++. |..++++. .+.. ....+.+++.|.-.++... ...+. ... +.
T Consensus 163 ~~~~~g~--~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~ 240 (357)
T 1zsy_A 163 EQLQPGD--SVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQ 240 (357)
T ss_dssp SCCCTTC--EEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCC
T ss_pred hccCCCC--EEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCC
Confidence 4566777 8999996 467888888875 88776642 2222 1234556565643333221 11111 111 14
Q ss_pred cceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 380 MDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 380 FDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+|+|+-.-.- ....+..++|++||.+++.
T Consensus 241 ~Dvvid~~g~----------~~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 241 PRLALNCVGG----------KSSTELLRQLARGGTMVTY 269 (357)
T ss_dssp CSEEEESSCH----------HHHHHHHTTSCTTCEEEEC
T ss_pred ceEEEECCCc----------HHHHHHHHhhCCCCEEEEE
Confidence 8998865432 1234578999999998875
No 382
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=76.93 E-value=5.1 Score=39.88 Aligned_cols=94 Identities=14% Similarity=-0.001 Sum_probs=57.1
Q ss_pred CCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc---cCCCccceEEec
Q 012235 313 IKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP---FFDNTMDLIHTT 386 (467)
Q Consensus 313 l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp---f~d~sFDlVis~ 386 (467)
+.+++ +||=+|+ |.|..+..+++. |.+|++++ +....+.+++.|.-.++.....++. ...+.+|+|+-.
T Consensus 181 ~~~g~--~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~---~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~ 255 (375)
T 2vn8_A 181 NCTGK--RVLILGASGGVGTFAIQVMKAWDAHVTAVC---SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDN 255 (375)
T ss_dssp TCTTC--EEEEETTTSHHHHHHHHHHHHTTCEEEEEE---CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEES
T ss_pred cCCCC--EEEEECCCCHHHHHHHHHHHhCCCEEEEEe---ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEEC
Confidence 55666 8999983 457777777765 88888854 3445666666564223322211110 012469999865
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..-. ...+....+.|++||.++...
T Consensus 256 ~g~~--------~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 256 VGGS--------TETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp SCTT--------HHHHGGGGBCSSSCCEEEESC
T ss_pred CCCh--------hhhhHHHHHhhcCCcEEEEeC
Confidence 5431 134577788999999988743
No 383
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=76.54 E-value=2.5 Score=42.11 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=55.4
Q ss_pred hcCC-CCCCceEEEECCCc-cHHHHHHhhC-CCEEEEEecCCCHHHHHHHH-HcCCccEEEccC-CCCccCCCccceEEe
Q 012235 311 LAIK-PGETRIGLDFGVGT-GTFAARMREQ-NVTIVSTALNLGAPFNEMIA-LRGLIPLYVTLN-QRLPFFDNTMDLIHT 385 (467)
Q Consensus 311 L~l~-~g~~r~VLDIGCGt-G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~-~rg~i~~~~~d~-~~Lpf~d~sFDlVis 385 (467)
..+. +++ +||=+|+|. |..+..+++. |..|++++ .++..++.+. +.|...++.... ..+.-..+.+|+|+.
T Consensus 182 ~~~~~~g~--~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~--~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid 257 (366)
T 1yqd_A 182 FGLDEPGK--HIGIVGLGGLGHVAVKFAKAFGSKVTVIS--TSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIID 257 (366)
T ss_dssp TTCCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEE--SCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEE
T ss_pred cCcCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEE
Confidence 3555 666 888899753 5666666654 88888844 4555555555 444322222110 011101246999987
Q ss_pred ccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 386 TGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 386 ~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..... ..+....+.|++||.++...
T Consensus 258 ~~g~~---------~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 258 TVSAV---------HPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp CCSSC---------CCSHHHHHHEEEEEEEEECC
T ss_pred CCCcH---------HHHHHHHHHHhcCCEEEEEc
Confidence 65431 13456678899999987743
No 384
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=74.99 E-value=8.2 Score=38.89 Aligned_cols=122 Identities=9% Similarity=0.066 Sum_probs=69.3
Q ss_pred hHHHHHHHhc-CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHH-HHHcCC----ccEEEccCCCCccC
Q 012235 303 VDFLISDILA-IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEM-IALRGL----IPLYVTLNQRLPFF 376 (467)
Q Consensus 303 ~d~~I~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~-a~~rg~----i~~~~~d~~~Lpf~ 376 (467)
+|.++.+.+. ...+. .||.+|.+.|.++..++..+++.+. |--++..+++. ++.++. +.+. ...+. .
T Consensus 25 ~d~~ll~~~~~~~~~~--~~~~~~d~~gal~~~~~~~~~~~~~-ds~~~~~~~~~n~~~~~~~~~~~~~~-~~~~~---~ 97 (375)
T 4dcm_A 25 ADEYLLQQLDDTEIRG--PVLILNDAFGALSCALAEHKPYSIG-DSYISELATRENLRLNGIDESSVKFL-DSTAD---Y 97 (375)
T ss_dssp HHHHHHHTTTTCCCCS--CEEEECCSSSHHHHHTGGGCCEEEE-SCHHHHHHHHHHHHHTTCCGGGSEEE-ETTSC---C
T ss_pred HHHHHHHhhhhccCCC--CEEEECCCCCHHHHhhccCCceEEE-hHHHHHHHHHHHHHHcCCCccceEec-ccccc---c
Confidence 5666554443 32333 7999999999999999876654332 21122222222 223333 2222 22222 3
Q ss_pred CCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 377 DNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
.+.||+|+.-..- ....+...|..+...|+||+.+++..-.. .......+.++..
T Consensus 98 ~~~~~~v~~~lpk----~~~~l~~~L~~l~~~l~~~~~i~~~g~~~--~~~~~~~~~l~~~ 152 (375)
T 4dcm_A 98 PQQPGVVLIKVPK----TLALLEQQLRALRKVVTSDTRIIAGAKAR--DIHTSTLELFEKV 152 (375)
T ss_dssp CSSCSEEEEECCS----CHHHHHHHHHHHHTTCCTTSEEEEEEEGG--GCCHHHHHHHHHH
T ss_pred ccCCCEEEEEcCC----CHHHHHHHHHHHHhhCCCCCEEEEEeccc--chHHHHHHHHHhh
Confidence 5679998875443 22335678899999999999997755322 2223455555543
No 385
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=74.95 E-value=4.5 Score=38.42 Aligned_cols=76 Identities=8% Similarity=-0.172 Sum_probs=45.0
Q ss_pred cEEEccCCC-Cc-cCCCccceEEeccccccc----c---ch----hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHH
Q 012235 364 PLYVTLNQR-LP-FFDNTMDLIHTTGFMDGW----L---DM----LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDY 430 (467)
Q Consensus 364 ~~~~~d~~~-Lp-f~d~sFDlVis~~~L~h~----~---~~----~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~ 430 (467)
.++++|+.. +. +++++||+|++.-....- . .. ..+...+.++.|+|+|||.+++..- ......+
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~---d~~~~~~ 82 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT---PFNCAFI 82 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC---HHHHHHH
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC---cHHHHHH
Confidence 456666432 11 346788888887554110 0 00 1245788899999999999988531 1112245
Q ss_pred HHHHHHcCceee
Q 012235 431 MYMFLQFRYKKH 442 (467)
Q Consensus 431 ~~~i~~~Gf~~l 442 (467)
...+...||.-.
T Consensus 83 ~~~~~~~gf~~~ 94 (260)
T 1g60_A 83 CQYLVSKGMIFQ 94 (260)
T ss_dssp HHHHHHTTCEEE
T ss_pred HHHHHhhcccee
Confidence 556777788543
No 386
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=74.48 E-value=6.5 Score=38.74 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=57.4
Q ss_pred cCCCC-CCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCH--HHHHHHHHcCCccEEEccC---CCCc-----c--
Q 012235 312 AIKPG-ETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGA--PFNEMIALRGLIPLYVTLN---QRLP-----F-- 375 (467)
Q Consensus 312 ~l~~g-~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~--~~l~~a~~rg~i~~~~~d~---~~Lp-----f-- 375 (467)
.++++ + +||=+|+ |.|.++..+++. |..++++.-+..+ ...+.+.+.|.-.++.... .++. .
T Consensus 163 ~~~~g~~--~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~ 240 (364)
T 1gu7_A 163 KLTPGKD--WFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIK 240 (364)
T ss_dssp CCCTTTC--EEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred ccCCCCc--EEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhh
Confidence 56666 6 8998886 457778888765 8888876544432 2234455555422332211 1111 0
Q ss_pred -CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 376 -FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 376 -~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+.+|+|+-.-.- .... +..++|++||.+++..
T Consensus 241 ~~~~g~Dvvid~~G~---------~~~~-~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 241 QSGGEAKLALNCVGG---------KSST-GIARKLNNNGLMLTYG 275 (364)
T ss_dssp HHTCCEEEEEESSCH---------HHHH-HHHHTSCTTCEEEECC
T ss_pred ccCCCceEEEECCCc---------hhHH-HHHHHhccCCEEEEec
Confidence 13469999865443 1233 6789999999988754
No 387
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=73.50 E-value=40 Score=33.47 Aligned_cols=114 Identities=10% Similarity=-0.005 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCCCCceEEEECCCccHHHHHHhhC---CCEEEEEecCCCHHHHHH---HHH-------------------
Q 012235 305 FLISDILAIKPGETRIGLDFGVGTGTFAARMREQ---NVTIVSTALNLGAPFNEM---IAL------------------- 359 (467)
Q Consensus 305 ~~I~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---g~~V~gvdiDiS~~~l~~---a~~------------------- 359 (467)
..+.+.+.-.++ .+.|+-+|||.=+...+|... +..++ ++|...-+..+ +..
T Consensus 79 ~~v~~fl~~~~~-~~QVV~LGaGlDTr~~RL~~~~~~~~~~~--EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~ 155 (334)
T 3iei_A 79 QLIKAFLRKTEC-HCQIVNLGAGMDTTFWRLKDEDLLSSKYF--EVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQM 155 (334)
T ss_dssp HHHHHHHHHTTT-CSEEEEETCTTCCHHHHHHHTTCCCSEEE--EEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBC
T ss_pred HHHHHHHHhCCC-CCEEEEeCCCcCchHHHhcCCCCCCCeEE--ECCcHHHHHHHHHHHhhchhhhhhhccccccccccc
Confidence 344455543222 348999999999999999875 44444 46654422211 111
Q ss_pred ------cCCccEEEccCCCCc----------cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 360 ------RGLIPLYVTLNQRLP----------FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 360 ------rg~i~~~~~d~~~Lp----------f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
.....++..|..+.. +..+.--++++-.++ .+.+.+....++..+.+.. |+|.+++.+...+
T Consensus 156 ~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL-~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p 233 (334)
T 3iei_A 156 DGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVL-VYMTPEQSANLLKWAANSF-ERAMFINYEQVNM 233 (334)
T ss_dssp CTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCG-GGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCT
T ss_pred ccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhh-hCCCHHHHHHHHHHHHHhC-CCceEEEEeccCC
Confidence 122345556665421 223344466666666 6776766788888888776 5566666565543
No 388
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=73.04 E-value=29 Score=32.15 Aligned_cols=65 Identities=17% Similarity=0.056 Sum_probs=43.4
Q ss_pred ceEEEECCCccHHHHHHh----hCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccc
Q 012235 319 RIGLDFGVGTGTFAARMR----EQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La----~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
.+||=.|+ |.++..++ ++|++|++++- +......... ..+.++.+|..++. -..+|.|+......
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r--~~~~~~~~~~-~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSR--NPDQMEAIRA-SGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEES--CGGGHHHHHH-TTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEc--ChhhhhhHhh-CCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 37899995 76665554 45999999554 3333333333 33788888888766 46789998876653
No 389
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=73.04 E-value=5.1 Score=39.32 Aligned_cols=69 Identities=13% Similarity=-0.017 Sum_probs=49.4
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEE-EEecCCCHHHHHHHHHcCC-ccEEEccCCCCccC----CCccceEEecc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIV-STALNLGAPFNEMIALRGL-IPLYVTLNQRLPFF----DNTMDLIHTTG 387 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~-gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lpf~----d~sFDlVis~~ 387 (467)
-+++|+=||.|.++..+.+.|..+. .+.+|+.+.+.+....+.. ..++.+|+..+... .+.+|+++...
T Consensus 17 ~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~ggp 91 (295)
T 2qrv_A 17 IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGS 91 (295)
T ss_dssp EEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEECC
T ss_pred CEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEecC
Confidence 3799999999999999999988763 2447777777766655432 34677887776421 14699999753
No 390
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=72.56 E-value=26 Score=34.22 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=57.9
Q ss_pred ceEEEECCCc--cHHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 319 RIGLDFGVGT--GTFAARMREQNV--TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 319 r~VLDIGCGt--G~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+|.=||+|. |.++..|++.|. .|++ .|.++..++.+.+.|.+.....+...+ .-...|+|+..-...
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~--~dr~~~~~~~a~~~G~~~~~~~~~~~~--~~~~aDvVilavp~~---- 105 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYG--YDINPESISKAVDLGIIDEGTTSIAKV--EDFSPDFVMLSSPVR---- 105 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEE--ECSCHHHHHHHHHTTSCSEEESCTTGG--GGGCCSEEEECSCGG----
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEE--EECCHHHHHHHHHCCCcchhcCCHHHH--hhccCCEEEEeCCHH----
Confidence 4788899884 367777888888 8888 566667777777777543333333320 124578888654431
Q ss_pred hhhHHHHHHHHHhccCCCcEE
Q 012235 395 MLLLDFILFDWDRILRPGGLL 415 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~L 415 (467)
....++.++...|+||..+
T Consensus 106 --~~~~vl~~l~~~l~~~~iv 124 (314)
T 3ggo_A 106 --TFREIAKKLSYILSEDATV 124 (314)
T ss_dssp --GHHHHHHHHHHHSCTTCEE
T ss_pred --HHHHHHHHHhhccCCCcEE
Confidence 2356888999999988754
No 391
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=71.83 E-value=6.1 Score=38.90 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc
Q 012235 313 IKPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 313 l~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r 360 (467)
..+++ .|||.-||+|+.+....+.|...+| +|+.+...+.+.+|
T Consensus 250 ~~~~~--~VlDpF~GsGtt~~aa~~~gr~~ig--~e~~~~~~~~~~~r 293 (323)
T 1boo_A 250 TEPDD--LVVDIFGGSNTTGLVAERESRKWIS--FEMKPEYVAASAFR 293 (323)
T ss_dssp CCTTC--EEEETTCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHGG
T ss_pred CCCCC--EEEECCCCCCHHHHHHHHcCCCEEE--EeCCHHHHHHHHHH
Confidence 35566 8999999999999999988999999 56667777777665
No 392
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=71.27 E-value=10 Score=37.45 Aligned_cols=84 Identities=21% Similarity=0.173 Sum_probs=48.9
Q ss_pred ccEE-EccCCC-Cc-cCCCccceEEecccccc----ccc----hhhHHHHHHHHHhccCCCcEEEEEecccCC-----CC
Q 012235 363 IPLY-VTLNQR-LP-FFDNTMDLIHTTGFMDG----WLD----MLLLDFILFDWDRILRPGGLLWIDRFFCNK-----KD 426 (467)
Q Consensus 363 i~~~-~~d~~~-Lp-f~d~sFDlVis~~~L~h----~~~----~~~l~~~L~el~RvLKPGG~LiI~~~~~~~-----~~ 426 (467)
..++ ++|+.. +. +++++||+|+..-...- |.. ...+...+.++.|+|+|||.+++..-.... ..
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~~~ 118 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGD 118 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCC
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccccccccccc
Confidence 3456 777543 21 34678999998765411 110 012457888999999999999885432211 12
Q ss_pred HHHHHHHHHHcC-ce---eeEEEE
Q 012235 427 LDDYMYMFLQFR-YK---KHKWAI 446 (467)
Q Consensus 427 ~~~~~~~i~~~G-f~---~l~W~~ 446 (467)
...+...+...| +. .+-|..
T Consensus 119 l~~l~~~i~~~G~~~~~~~IIW~K 142 (319)
T 1eg2_A 119 LISIISHMRQNSKMLLANLIIWNY 142 (319)
T ss_dssp HHHHHHHHHHHCCCEEEEEEEEEC
T ss_pred HHHHHHHHhCcccceeEEEEEEEC
Confidence 245555666556 53 344653
No 393
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=70.57 E-value=4.9 Score=39.53 Aligned_cols=88 Identities=5% Similarity=-0.125 Sum_probs=52.1
Q ss_pred eEEEE-CCC-ccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccceEEeccccc
Q 012235 320 IGLDF-GVG-TGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDI-GCG-tG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDlVis~~~L~ 390 (467)
+||=. |+| .|..+..+++. |.+|++++ .++..++.+.+.|...++.....++. ...+.+|+|+-...-
T Consensus 167 ~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~--~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~- 243 (349)
T 3pi7_A 167 AFVMTAGASQLCKLIIGLAKEEGFRPIVTV--RRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG- 243 (349)
T ss_dssp EEEESSTTSHHHHHHHHHHHHHTCEEEEEE--SCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-
Confidence 55533 332 45566666655 88998854 45556677776664333332222211 011369999875543
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
..+....+.|++||.+++..
T Consensus 244 ---------~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 244 ---------PLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp ---------HHHHHHHHHSCTTCEEEECC
T ss_pred ---------hhHHHHHhhhcCCCEEEEEe
Confidence 23467889999999998854
No 394
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=70.45 E-value=4.9 Score=41.04 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=28.8
Q ss_pred cCCCCCCceEEEECCCccHHHHHHh-hC-C--CEEEEEecCCCHHHHHH
Q 012235 312 AIKPGETRIGLDFGVGTGTFAARMR-EQ-N--VTIVSTALNLGAPFNEM 356 (467)
Q Consensus 312 ~l~~g~~r~VLDIGCGtG~~a~~La-~~-g--~~V~gvdiDiS~~~l~~ 356 (467)
.+.++. +++|+|++.|.++..++ .. + ..|+++++ .+...+.
T Consensus 223 ~l~~~~--~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP--~p~~~~~ 267 (409)
T 2py6_A 223 RFSDSE--KMVDCGASIGESLAGLIGVTKGKFERVWMIEP--DRINLQT 267 (409)
T ss_dssp CCCSSC--EEEEETCTTSHHHHHHHHHHTSCCSEEEEECC--CHHHHHH
T ss_pred ccCCCC--EEEECCCCcCHHHHHHHHHhcCCCCEEEEEcC--CHHHHHH
Confidence 345665 89999999999999887 33 2 57888554 4444333
No 395
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=69.89 E-value=30 Score=36.24 Aligned_cols=55 Identities=7% Similarity=-0.081 Sum_probs=40.1
Q ss_pred ceEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC----CccEEEccCCCCc
Q 012235 319 RIGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRG----LIPLYVTLNQRLP 374 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg----~i~~~~~d~~~Lp 374 (467)
-+++|+=||.|.++..+.+.|..++ +.+|+.+.+.+....+. ...++.+|+..+.
T Consensus 89 ~~viDLFaG~GGlslG~~~aG~~~v-~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~ 147 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESIGGQCV-FTSEWNKHAVRTYKANHYCDPATHHFNEDIRDIT 147 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTTTEEEE-EEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHH
T ss_pred ceEEEecCCccHHHHHHHHCCCEEE-EEEeCCHHHHHHHHHhcccCCCcceeccchhhhh
Confidence 3799999999999999998888754 34677777777665542 2456777766543
No 396
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}
Probab=69.84 E-value=7 Score=38.41 Aligned_cols=93 Identities=19% Similarity=0.150 Sum_probs=53.7
Q ss_pred HhcCCCCCCceEEEECC--CccHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc-----cCCCcc
Q 012235 310 ILAIKPGETRIGLDFGV--GTGTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP-----FFDNTM 380 (467)
Q Consensus 310 lL~l~~g~~r~VLDIGC--GtG~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp-----f~d~sF 380 (467)
...+++++ +||=.|+ |.|..+..+++. +..|++++ +....+.+. .+...++. ...++. ..++.+
T Consensus 137 ~~~~~~g~--~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~---~~~~~~~~~-~ga~~~~~-~~~~~~~~~~~~~~~g~ 209 (349)
T 4a27_A 137 VANLREGM--SVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA---STFKHEAIK-DSVTHLFD-RNADYVQEVKRISAEGV 209 (349)
T ss_dssp TSCCCTTC--EEEESSTTSHHHHHHHHHHTTSTTCEEEEEE---CGGGHHHHG-GGSSEEEE-TTSCHHHHHHHHCTTCE
T ss_pred hcCCCCCC--EEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHH-cCCcEEEc-CCccHHHHHHHhcCCCc
Confidence 34566777 8999997 357788888765 46788754 333344444 44322332 211111 124579
Q ss_pred ceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+|+-.-.- ..+.+..+.|++||.+++..
T Consensus 210 Dvv~d~~g~----------~~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 210 DIVLDCLCG----------DNTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp EEEEEECC-----------------CTTEEEEEEEEEEC
T ss_pred eEEEECCCc----------hhHHHHHHHhhcCCEEEEEC
Confidence 999865432 12467889999999998754
No 397
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=69.26 E-value=8.7 Score=37.62 Aligned_cols=84 Identities=19% Similarity=0.295 Sum_probs=51.5
Q ss_pred CCccCCCccceEEeccc----cccccchh----hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeE
Q 012235 372 RLPFFDNTMDLIHTTGF----MDGWLDML----LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 372 ~Lpf~d~sFDlVis~~~----L~h~~~~~----~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~ 443 (467)
.+|-.-+.||+|+.+-. .+|+..=+ .+..+-....+.|+|||.+++..+...+...+..+..+.+- |+..+
T Consensus 204 G~P~~~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARk-F~~~r 282 (324)
T 3trk_A 204 GLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRK-FRSSR 282 (324)
T ss_dssp CCCGGGCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCcCCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhh-heeee
Confidence 34544589999998743 34443211 12234456789999999999998887765555555556554 55554
Q ss_pred EEEccC---CCCceEEE
Q 012235 444 WAISPK---SKDEVYLS 457 (467)
Q Consensus 444 W~~~~k---~~devyl~ 457 (467)
-. .++ .+-|+++.
T Consensus 283 v~-~P~cv~snTEv~~v 298 (324)
T 3trk_A 283 AL-KPPCVTSNTEMFFL 298 (324)
T ss_dssp EE-CCTTCCBTTCEEEE
T ss_pred ee-cCccccccceEEEE
Confidence 32 222 45667664
No 398
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=68.48 E-value=11 Score=37.99 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=65.6
Q ss_pred eEEEECCCccHHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhhHH
Q 012235 320 IGLDFGVGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLLLD 399 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~l~ 399 (467)
+||+++-+.|.++..+... ..+.. +..+.........+|.-..... .....+..||+|+.-..-. .....++
T Consensus 48 ~~l~~n~~~g~~~~~~~~~-~~~~~--~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~d~v~~~~Pk~--k~~~~~~ 119 (381)
T 3dmg_A 48 RALDLNPGVGWGSLPLEGR-MAVER--LETSRAAFRCLTASGLQARLAL---PWEAAAGAYDLVVLALPAG--RGTAYVQ 119 (381)
T ss_dssp EEEESSCTTSTTTGGGBTT-BEEEE--EECBHHHHHHHHHTTCCCEECC---GGGSCTTCEEEEEEECCGG--GCHHHHH
T ss_pred cEEEecCCCCccccccCCC-CceEE--EeCcHHHHHHHHHcCCCccccC---CccCCcCCCCEEEEECCcc--hhHHHHH
Confidence 7999999999887777533 45555 3445555555666664221111 1223467899988644321 0111257
Q ss_pred HHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHH
Q 012235 400 FILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFL 435 (467)
Q Consensus 400 ~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~ 435 (467)
..|.++.+.|+|||.+++..-. .+..+.+.+.+.
T Consensus 120 ~~l~~~~~~l~~g~~i~~~g~~--~~g~~~~~~~~~ 153 (381)
T 3dmg_A 120 ASLVAAARALRMGGRLYLAGDK--NKGFERYFKEAR 153 (381)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEG--GGTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEEcc--HHHHHHHHHHHH
Confidence 8899999999999999885432 234555666555
No 399
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=68.31 E-value=31 Score=28.65 Aligned_cols=105 Identities=8% Similarity=-0.006 Sum_probs=58.5
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cCCCccceEEecccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~d~sFDlVis~~~L~h~~ 393 (467)
+|+=+|+|. | .++..|.+.|..|+.+ |.++...+.+...+ +.++.+|..+.. ..-..+|+|+....-
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~~V~~i--d~~~~~~~~~~~~~-~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~---- 80 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGKKVLAV--DKSKEKIELLEDEG-FDAVIADPTDESFYRSLDLEGVSAVLITGSD---- 80 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEE--ESCHHHHHHHHHTT-CEEEECCTTCHHHHHHSCCTTCSEEEECCSC----
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEE--ECCHHHHHHHHHCC-CcEEECCCCCHHHHHhCCcccCCEEEEecCC----
Confidence 688899864 2 3445555669999995 45566666666655 567777765432 123468888865441
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
+. ....+....+-+. .+.++.... . ....+.++++|..
T Consensus 81 -~~-~n~~~~~~a~~~~-~~~iia~~~---~---~~~~~~l~~~G~~ 118 (141)
T 3llv_A 81 -DE-FNLKILKALRSVS-DVYAIVRVS---S---PKKKEEFEEAGAN 118 (141)
T ss_dssp -HH-HHHHHHHHHHHHC-CCCEEEEES---C---GGGHHHHHHTTCS
T ss_pred -HH-HHHHHHHHHHHhC-CceEEEEEc---C---hhHHHHHHHcCCC
Confidence 11 1233444555555 455444221 1 1234556677654
No 400
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=66.60 E-value=17 Score=34.60 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=50.7
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCC-ccEEEccCCCCc-----cCCCccceEEecccc
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALRGL-IPLYVTLNQRLP-----FFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~~Lp-----f~d~sFDlVis~~~L 389 (467)
++|=-|++.| ..+..|++.|.+|+..+.+..++..+.+.+.+. +..+..|..+-. +..+..|+++.+...
T Consensus 11 valVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNAGi 89 (247)
T 4hp8_A 11 KALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNAGI 89 (247)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECCCC
T ss_pred EEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECCCC
Confidence 7888888888 577888888999999888776666777766653 556666644321 345679999987654
No 401
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=65.39 E-value=73 Score=36.49 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=77.1
Q ss_pred ceEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcC-CccEEEccCCCC---------------cc-CCCcc
Q 012235 319 RIGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRL---------------PF-FDNTM 380 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~L---------------pf-~d~sF 380 (467)
-+++|+=||.|.++..|.+.|+ .++ .++|+.+.+.+....+. ...++.+|+..+ .+ ..+.+
T Consensus 541 l~~iDLFaG~GGlslGl~~AG~~~vv-~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~~v 619 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQAGISDTL-WAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDV 619 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHHTSEEEE-EEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTTTC
T ss_pred CeEEEeccCccHHHHHHHHCCCCceE-EEEECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcccCCCe
Confidence 3789999999999999988897 433 23677777776665543 244555443211 11 13578
Q ss_pred ceEEeccc-----cccccch-------hhHHHHHHHHHhccCCCcEEEEEeccc--CC--CCHHHHHHHHHHcCceeeEE
Q 012235 381 DLIHTTGF-----MDGWLDM-------LLLDFILFDWDRILRPGGLLWIDRFFC--NK--KDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 381 DlVis~~~-----L~h~~~~-------~~l~~~L~el~RvLKPGG~LiI~~~~~--~~--~~~~~~~~~i~~~Gf~~l~W 444 (467)
|+|+.... ...-... ..+-..+..+.+.++|.-.++=..... .. .....+.+.++.+||.. .|
T Consensus 620 Dll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk~~llENV~glls~~~~~~~~~i~~~L~~lGY~v-~~ 698 (1002)
T 3swr_A 620 EMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQC-TF 698 (1002)
T ss_dssp SEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCSEEEEEEEGGGGTTGGGHHHHHHHHHHHHHTCEE-EE
T ss_pred eEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCCCEEEEeccHHHhccCcchHHHHHHHHHHhcCCeE-EE
Confidence 99997532 1111000 011123345556678864433222221 11 12346777888999965 45
Q ss_pred EEccC-------CCCceEEEEE
Q 012235 445 AISPK-------SKDEVYLSAL 459 (467)
Q Consensus 445 ~~~~k-------~~devyl~av 459 (467)
.+..- .+..+|+.+.
T Consensus 699 ~vLnA~dyGvPQ~R~R~fiva~ 720 (1002)
T 3swr_A 699 GVLQAGQYGVAQTRRRAIILAA 720 (1002)
T ss_dssp EEEEGGGGTCSBCCEEEEEEEE
T ss_pred EEEEHHHCCCCccceEEEEEEE
Confidence 44332 3455676664
No 402
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=65.05 E-value=44 Score=31.23 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=52.3
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|.=||+|. | .++..|.+.|++|+. .|.++...+.+.+.+.......+.... ...|+|+..-... .
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~D~vi~av~~~------~ 69 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIG--VSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCTPIQ------L 69 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECSCHH------H
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEE--EECCHHHHHHHHhCCCCccccCCHHHh----CCCCEEEEECCHH------H
Confidence 466788875 2 566667777888888 455666666666555432222232222 4579888765431 2
Q ss_pred HHHHHHHHHhccCCCcEE
Q 012235 398 LDFILFDWDRILRPGGLL 415 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~L 415 (467)
...++.++...++||..+
T Consensus 70 ~~~~~~~l~~~~~~~~~v 87 (279)
T 2f1k_A 70 ILPTLEKLIPHLSPTAIV 87 (279)
T ss_dssp HHHHHHHHGGGSCTTCEE
T ss_pred HHHHHHHHHhhCCCCCEE
Confidence 356788888888887754
No 403
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=64.84 E-value=27 Score=31.53 Aligned_cols=90 Identities=10% Similarity=-0.106 Sum_probs=51.9
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEecccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~ 393 (467)
+|+=+|+|. | .++..|.+.|..|+.+ |.++...+.+.+...+.++.+|..+... .-...|+|++...-
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vi--d~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~---- 75 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVII--NKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPR---- 75 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEE--ESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC----
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEE--ECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC----
Confidence 356677643 1 3444445569999984 4556666655544336788888765321 13468888865432
Q ss_pred chhhHHHHHHHHHhccCCCcEEEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+ .....+..+.+.+.|...++.
T Consensus 76 -d-~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 76 -D-EVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp -H-HHHHHHHHHHHHTSCCCEEEE
T ss_pred -c-HHHHHHHHHHHHHcCCCeEEE
Confidence 1 123455666666667666554
No 404
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=64.15 E-value=21 Score=36.52 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=58.5
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEecccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h~~ 393 (467)
+|+=+|+|. | .++..|.+.|+.|+. +|.++..++.+...+ +.++.+|..+... .-...|+|++...-
T Consensus 6 ~viIiG~Gr~G~~va~~L~~~g~~vvv--Id~d~~~v~~~~~~g-~~vi~GDat~~~~L~~agi~~A~~viv~~~~---- 78 (413)
T 3l9w_A 6 RVIIAGFGRFGQITGRLLLSSGVKMVV--LDHDPDHIETLRKFG-MKVFYGDATRMDLLESAGAAKAEVLINAIDD---- 78 (413)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEE--EECCHHHHHHHHHTT-CCCEESCTTCHHHHHHTTTTTCSEEEECCSS----
T ss_pred eEEEECCCHHHHHHHHHHHHCCCCEEE--EECCHHHHHHHHhCC-CeEEEcCCCCHHHHHhcCCCccCEEEECCCC----
Confidence 578888864 3 344455566999999 555567777777666 5788888776431 23567888765432
Q ss_pred chhhHHHHHHHHHhccCCCcEEEE
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+ .....+....|-+.|...++.
T Consensus 79 -~-~~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 79 -P-QTNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp -H-HHHHHHHHHHHHHCTTCEEEE
T ss_pred -h-HHHHHHHHHHHHhCCCCeEEE
Confidence 1 123456777788889877766
No 405
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=62.04 E-value=19 Score=38.62 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=50.7
Q ss_pred CccCCCccceEEecc----ccccccchh----hHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCceeeEE
Q 012235 373 LPFFDNTMDLIHTTG----FMDGWLDML----LLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKW 444 (467)
Q Consensus 373 Lpf~d~sFDlVis~~----~L~h~~~~~----~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~l~W 444 (467)
+|. .+.||+|+.+- -.+|+..=+ .+..+-....+.|+|||.+++..+...+...+..+..+.+- |+..+-
T Consensus 216 ~p~-~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRk-F~~~rv 293 (670)
T 4gua_A 216 FPP-QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARK-FVRVSA 293 (670)
T ss_dssp CCC-CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHT-EEEEEE
T ss_pred CCC-CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhh-eeeeee
Confidence 553 46899999863 334554211 12234457889999999999998888765555555555543 454433
Q ss_pred EEccC---CCCceEEEE
Q 012235 445 AISPK---SKDEVYLSA 458 (467)
Q Consensus 445 ~~~~k---~~devyl~a 458 (467)
. .++ .+.|+++..
T Consensus 294 ~-~p~~~~snTEv~~~f 309 (670)
T 4gua_A 294 A-RPDCVSSNTEMYLIF 309 (670)
T ss_dssp E-CCTTCSBTTCEEEEE
T ss_pred e-CCCccccCceEEEEE
Confidence 2 222 456776643
No 406
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=59.38 E-value=51 Score=35.63 Aligned_cols=116 Identities=8% Similarity=0.025 Sum_probs=68.4
Q ss_pred HHHHHHHhcCC-CCCCceEEEECCCccHHHHHHhhCCC--------EEEEEecCCCHHHHHHH---HHc-----------
Q 012235 304 DFLISDILAIK-PGETRIGLDFGVGTGTFAARMREQNV--------TIVSTALNLGAPFNEMI---ALR----------- 360 (467)
Q Consensus 304 d~~I~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~g~--------~V~gvdiDiS~~~l~~a---~~r----------- 360 (467)
+..+.+++... .+..+.|+-+|||.=+.+.+|..... .+.-+++|....+..+. .+.
T Consensus 93 d~~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~ 172 (695)
T 2zwa_A 93 RSRLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSE 172 (695)
T ss_dssp HHHHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCS
T ss_pred HHHHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccc
Confidence 44555665533 22345899999999999999976522 45556677655332222 110
Q ss_pred ---------------CCccEEEccCCCCc----------c-CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcE
Q 012235 361 ---------------GLIPLYVTLNQRLP----------F-FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGL 414 (467)
Q Consensus 361 ---------------g~i~~~~~d~~~Lp----------f-~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~ 414 (467)
....++..|+.+.. + ..+.--++++-.++ .+.+.+....+|..+.+. |+|.
T Consensus 173 ~~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl-~Yl~~~~~~~ll~~~~~~--~~~~ 249 (695)
T 2zwa_A 173 DKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSL-AYMKPERSDSIIEATSKM--ENSH 249 (695)
T ss_dssp SCSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSG-GGSCHHHHHHHHHHHHTS--SSEE
T ss_pred ccccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEE-EEcCHHHHHHHHHHHhhC--CCce
Confidence 12335555665531 1 22333455566666 677776778888888864 6777
Q ss_pred EEEEeccc
Q 012235 415 LWIDRFFC 422 (467)
Q Consensus 415 LiI~~~~~ 422 (467)
+++.+...
T Consensus 250 ~~~~e~~~ 257 (695)
T 2zwa_A 250 FIILEQLI 257 (695)
T ss_dssp EEEEEECC
T ss_pred EEEEEeec
Confidence 77755433
No 407
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=57.62 E-value=10 Score=37.48 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=34.0
Q ss_pred CCCCCceEEEECCCccHHHHHHhhCCCEEEEEecCCCH---HHHHHHHHc
Q 012235 314 KPGETRIGLDFGVGTGTFAARMREQNVTIVSTALNLGA---PFNEMIALR 360 (467)
Q Consensus 314 ~~g~~r~VLDIGCGtG~~a~~La~~g~~V~gvdiDiS~---~~l~~a~~r 360 (467)
.+++ .|||.=||+|+.+....+.|...+|++ +.+ ...+.+.+|
T Consensus 241 ~~~~--~vlDpF~GsGtt~~aa~~~~r~~ig~e--~~~~~~~~~~~~~~R 286 (319)
T 1eg2_A 241 HPGS--TVLDFFAGSGVTARVAIQEGRNSICTD--AAPVFKEYYQKQLTF 286 (319)
T ss_dssp CTTC--EEEETTCTTCHHHHHHHHHTCEEEEEE--SSTHHHHHHHHHHHH
T ss_pred CCCC--EEEecCCCCCHHHHHHHHcCCcEEEEE--CCccHHHHHHHHHHH
Confidence 4566 899999999999999988899999954 555 566666555
No 408
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=57.26 E-value=88 Score=27.06 Aligned_cols=107 Identities=9% Similarity=-0.048 Sum_probs=61.1
Q ss_pred eEEEECCCc-c-HHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----c-CCCccceEEecccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----F-FDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f-~d~sFDlVis~~~L~h 391 (467)
+|+=+|+|. | .++..|.+. |+.|+++ |.++...+.+...+ +.++.+|..+.. . .-..+|+|+....-
T Consensus 41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vi--d~~~~~~~~~~~~g-~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~-- 115 (183)
T 3c85_A 41 QVLILGMGRIGTGAYDELRARYGKISLGI--EIREEAAQQHRSEG-RNVISGDATDPDFWERILDTGHVKLVLLAMPH-- 115 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHCSCEEEE--ESCHHHHHHHHHTT-CCEEECCTTCHHHHHTBCSCCCCCEEEECCSS--
T ss_pred cEEEECCCHHHHHHHHHHHhccCCeEEEE--ECCHHHHHHHHHCC-CCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC--
Confidence 688889874 3 445566677 8999985 44556666666555 566777654321 1 13468988874332
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCcee
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKK 441 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~~ 441 (467)
+. ....+....+.+.|++.++... .+. ...+.+.+.|...
T Consensus 116 ---~~-~~~~~~~~~~~~~~~~~ii~~~-----~~~-~~~~~l~~~G~~~ 155 (183)
T 3c85_A 116 ---HQ-GNQTALEQLQRRNYKGQIAAIA-----EYP-DQLEGLLESGVDA 155 (183)
T ss_dssp ---HH-HHHHHHHHHHHTTCCSEEEEEE-----SSH-HHHHHHHHHTCSE
T ss_pred ---hH-HHHHHHHHHHHHCCCCEEEEEE-----CCH-HHHHHHHHcCCCE
Confidence 11 1223344666677777776632 112 2334556666543
No 409
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=56.19 E-value=64 Score=30.22 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=58.5
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHH---HHHHHHcC-CccEEEccCCCCcc----------CCCccc
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPF---NEMIALRG-LIPLYVTLNQRLPF----------FDNTMD 381 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~---l~~a~~rg-~i~~~~~d~~~Lpf----------~d~sFD 381 (467)
+++|=.|++.| .++..|+++|..|+.++.+..... .+.+...+ .+.++.+|..+..- .-+..|
T Consensus 32 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 111 (271)
T 3v2g_A 32 KTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLD 111 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCc
Confidence 38899998877 567778888999988644432222 12222223 35667777654320 013689
Q ss_pred eEEecccccccc-----chhhH-----------HHHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWL-----DMLLL-----------DFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~-----~~~~l-----------~~~L~el~RvLKPGG~LiI~~ 419 (467)
+++.+....... +.+.+ -.+++.+.+.++++|.++...
T Consensus 112 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 112 ILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999876542211 11111 134556677788888887753
No 410
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=55.80 E-value=31 Score=33.86 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=57.3
Q ss_pred hcCCCCCCceEEEECCC-ccHHHHHHhh-C-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCC---CC-ccC-CCccce
Q 012235 311 LAIKPGETRIGLDFGVG-TGTFAARMRE-Q-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQ---RL-PFF-DNTMDL 382 (467)
Q Consensus 311 L~l~~g~~r~VLDIGCG-tG~~a~~La~-~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~---~L-pf~-d~sFDl 382 (467)
..+++++ +||=+|+| .|.++..+++ . |.+|++ ++.++..++.+++.|.-.++..... .+ ... ...+|+
T Consensus 182 ~~~~~g~--~VlV~GaG~vG~~avqlak~~~Ga~Vi~--~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dv 257 (359)
T 1h2b_A 182 RTLYPGA--YVAIVGVGGLGHIAVQLLKVMTPATVIA--LDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNV 257 (359)
T ss_dssp TTCCTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEE--EESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcE
Confidence 5677777 89999875 3456666665 4 788888 5556667777777664333322211 00 011 236999
Q ss_pred EEeccccccccchhhHHH--HHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDF--ILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~--~L~el~RvLKPGG~LiI~~ 419 (467)
|+-.-.- .. .+....+. +||.+++..
T Consensus 258 vid~~G~---------~~~~~~~~~~~~--~~G~~v~~g 285 (359)
T 1h2b_A 258 AMDFVGS---------QATVDYTPYLLG--RMGRLIIVG 285 (359)
T ss_dssp EEESSCC---------HHHHHHGGGGEE--EEEEEEECC
T ss_pred EEECCCC---------chHHHHHHHhhc--CCCEEEEEe
Confidence 9865543 12 55566666 899988754
No 411
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=55.40 E-value=82 Score=29.37 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=52.6
Q ss_pred eEEEECCCc-c-HHHHHHhhCCC--EEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCC-ccceEEeccccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNV--TIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDN-TMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~--~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~-sFDlVis~~~L~h~~~ 394 (467)
+|.=||+|. | .++..|++.|. +|++ .|.++...+.+.+.+.......+.... -. ..|+|+..-...
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~--~d~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~aDvVilavp~~---- 73 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYG--YDINPESISKAVDLGIIDEGTTSIAKV---EDFSPDFVMLSSPVR---- 73 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEE--ECSCHHHHHHHHHTTSCSEEESCGGGG---GGTCCSEEEECSCHH----
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEE--EeCCHHHHHHHHHCCCcccccCCHHHH---hcCCCCEEEEcCCHH----
Confidence 567788875 3 55666677787 8888 555666666666666432222222111 13 578888654431
Q ss_pred hhhHHHHHHHHHhccCCCcEEEE
Q 012235 395 MLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI 417 (467)
....++.++...++++..++.
T Consensus 74 --~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 74 --TFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp --HHHHHHHHHHHHSCTTCEEEE
T ss_pred --HHHHHHHHHHhhCCCCcEEEE
Confidence 134677888888998875443
No 412
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=53.40 E-value=40 Score=31.23 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=58.6
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHc--CCccEEEccCCCCcc----------CCCccceE
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLPF----------FDNTMDLI 383 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lpf----------~d~sFDlV 383 (467)
+++|=.|++.| .++..|+++|.+|+.++. +.+.++.+.+. ..+.++..|..+..- .-+..|++
T Consensus 9 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 86 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLVEGGAEVLLTGR--NESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL 86 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 37888898777 467777888999998544 44444444332 235677777655321 01468999
Q ss_pred Eecccccccc-----chhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 384 HTTGFMDGWL-----DMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 384 is~~~L~h~~-----~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
+.+....... +.+.++ .+.+.+...++.+|.++...
T Consensus 87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 87 HINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 8876543211 111111 23455666677788877753
No 413
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}
Probab=52.85 E-value=10 Score=42.18 Aligned_cols=92 Identities=16% Similarity=0.085 Sum_probs=54.2
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccce
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDL 382 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDl 382 (467)
.+++++ +||=.|+ |.|..+..+++. |.+|++++-+ + ..+.+. .+.-.++.....++. .....+|+
T Consensus 342 ~l~~G~--~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~--~-k~~~l~-lga~~v~~~~~~~~~~~i~~~t~g~GvDv 415 (795)
T 3slk_A 342 GLRPGE--SLLVHSAAGGVGMAAIQLARHLGAEVYATASE--D-KWQAVE-LSREHLASSRTCDFEQQFLGATGGRGVDV 415 (795)
T ss_dssp CCCTTC--CEEEESTTBHHHHHHHHHHHHTTCCEEEECCG--G-GGGGSC-SCGGGEECSSSSTHHHHHHHHSCSSCCSE
T ss_pred CCCCCC--EEEEecCCCHHHHHHHHHHHHcCCEEEEEeCh--H-Hhhhhh-cChhheeecCChhHHHHHHHHcCCCCeEE
Confidence 355666 8898884 567888888876 8888886432 1 111111 121122211111110 12346999
Q ss_pred EEeccccccccchhhHHHHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~~ 419 (467)
|+-+..- ..+.+..++|+|||+++...
T Consensus 416 Vld~~gg----------~~~~~~l~~l~~~Gr~v~iG 442 (795)
T 3slk_A 416 VLNSLAG----------EFADASLRMLPRGGRFLELG 442 (795)
T ss_dssp EEECCCT----------TTTHHHHTSCTTCEEEEECC
T ss_pred EEECCCc----------HHHHHHHHHhcCCCEEEEec
Confidence 9975432 24677889999999998753
No 414
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=51.12 E-value=2.4e+02 Score=33.32 Aligned_cols=136 Identities=13% Similarity=0.227 Sum_probs=75.4
Q ss_pred eEEEECCCccHHHHHHhhCCC-EEEEEecCCCHHHHHHHHHcCC-ccEEEccCC-----------------CCccCCCcc
Q 012235 320 IGLDFGVGTGTFAARMREQNV-TIVSTALNLGAPFNEMIALRGL-IPLYVTLNQ-----------------RLPFFDNTM 380 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g~-~V~gvdiDiS~~~l~~a~~rg~-i~~~~~d~~-----------------~Lpf~d~sF 380 (467)
+++|+=||.|.++.-+.+.|. .++ ..+|+.+.+.+....+.. ..++.+|+. .+|. .+.+
T Consensus 853 ~viDLFsG~GGlslGfe~AG~~~vv-~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~-~~~v 930 (1330)
T 3av4_A 853 RTLDVFSGCGGLSEGFHQAGISETL-WAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQ-KGDV 930 (1330)
T ss_dssp EEEEETCTTSHHHHHHHHTTSEEEE-EEECCSHHHHHHHHHHCTTSEEECSCHHHHHHHHTTTCSBCSSCCBCCC-TTTC
T ss_pred eEEecccCccHHHHHHHHCCCCceE-EEEECCHHHHHHHHHhCCCCcEeeccHHHHhHhhhccchhhhhhhhccc-cCcc
Confidence 689999999999999998897 333 236777777766655432 344444422 1221 2568
Q ss_pred ceEEecccccccc-----ch-------hhHHHHHHHHHhccCCCcEEEEEe-cc--cCCC--CHHHHHHHHHHcCceeeE
Q 012235 381 DLIHTTGFMDGWL-----DM-------LLLDFILFDWDRILRPGGLLWIDR-FF--CNKK--DLDDYMYMFLQFRYKKHK 443 (467)
Q Consensus 381 DlVis~~~L~h~~-----~~-------~~l~~~L~el~RvLKPGG~LiI~~-~~--~~~~--~~~~~~~~i~~~Gf~~l~ 443 (467)
|+|+....=..+. .. ..+-..+.++.+.++|. +|++-. .. .... ..+.+...++.+||.. .
T Consensus 931 Dvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rPk-~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v-~ 1008 (1330)
T 3av4_A 931 EMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPR-FFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQC-T 1008 (1330)
T ss_dssp SEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCCS-EEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEE-E
T ss_pred ceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcCc-EEEEeccHHHhccCccHHHHHHHHHHHhcCCee-e
Confidence 9999753111111 00 01111234455566886 334422 21 1111 2346778888999964 4
Q ss_pred EEEccC-------CCCceEEEEE
Q 012235 444 WAISPK-------SKDEVYLSAL 459 (467)
Q Consensus 444 W~~~~k-------~~devyl~av 459 (467)
|.+..- .+..+|+.+.
T Consensus 1009 ~~vLnA~dyGVPQ~R~Rvfivg~ 1031 (1330)
T 3av4_A 1009 FGVLQAGQYGVAQTRRRAIILAA 1031 (1330)
T ss_dssp EEEEEGGGGSCSBCCEEEEEEEE
T ss_pred EEEecHHHcCCCccccEEEEEEe
Confidence 543332 4555677665
No 415
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=50.82 E-value=57 Score=34.11 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=44.9
Q ss_pred eEEEEC-CCccH--HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEcc-CCCCccCCCccceEEecccc
Q 012235 320 IGLDFG-VGTGT--FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTL-NQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIG-CGtG~--~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d-~~~Lpf~d~sFDlVis~~~L 389 (467)
+|.=|| ||+|. .+..|.++|..|.+.|....+++.+...+.| +++..+. ...+ ...+|+|+.+..+
T Consensus 21 ~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~g-i~~~~G~~~~~~---~~~~d~vV~Spgi 90 (524)
T 3hn7_A 21 HIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAG-VTIEEGYLIAHL---QPAPDLVVVGNAM 90 (524)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTT-CEEEESCCGGGG---CSCCSEEEECTTC
T ss_pred EEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCC-CEEECCCCHHHc---CCCCCEEEECCCc
Confidence 677787 45664 5666778899999988876666666666666 5666553 1222 2358999988766
No 416
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=49.91 E-value=8.2 Score=33.83 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=30.0
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.+++++||.|+-...-.. ....-.+.++..+.+.|||||.|.-
T Consensus 54 sLp~stYD~V~~lt~~~~-~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQ-TDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCSSSCCSEEEECCCSS-CSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cCCcccccEEEEecCCcc-chhhcCHHHHHHHHHHhCCCCEEEe
Confidence 456899999996543321 0000015799999999999999876
No 417
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=48.12 E-value=50 Score=32.13 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=45.0
Q ss_pred ceEEEECC-CccH--HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccc
Q 012235 319 RIGLDFGV-GTGT--FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 319 r~VLDIGC-GtG~--~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
++|+=||- |+|. .+..|.++|+.|+++|....++..+...+.| +++..+... ..+....+|+|+.+..+
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~g-i~v~~g~~~-~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALG-IDVYEGFDA-AQLDEFKADVYVIGNVA 76 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTT-CEEEESCCG-GGGGSCCCSEEEECTTC
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCC-CEEECCCCH-HHcCCCCCCEEEECCCc
Confidence 46788886 5564 4566778899999988776666666666666 556654211 11211358999987766
No 418
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=46.77 E-value=72 Score=26.84 Aligned_cols=91 Identities=2% Similarity=-0.200 Sum_probs=50.9
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHH--cCCccEEEccCCCCcc----CCCccceEEecccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIAL--RGLIPLYVTLNQRLPF----FDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~--rg~i~~~~~d~~~Lpf----~d~sFDlVis~~~L~h 391 (467)
+|+=+|+|. | .++..|.+.|..|+.++.+. ....+.+.. ...+.++.+|..+... .-...|+|++...-
T Consensus 5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~-~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~-- 81 (153)
T 1id1_A 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP-EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN-- 81 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC-HHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC--
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-hHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC--
Confidence 577777643 1 23344555689999966543 222222221 2236788888654321 13467888876432
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+ .....+....+-+.|...++.
T Consensus 82 ---d-~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 82 ---D-ADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp ---H-HHHHHHHHHHHHHTSSSCEEE
T ss_pred ---h-HHHHHHHHHHHHHCCCCEEEE
Confidence 1 123456667777777777655
No 419
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=45.17 E-value=1.7e+02 Score=31.88 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=29.2
Q ss_pred ceEEEECCCccHHHHHHhhCC------CEEEEEecCCCHHHHHHHHHc
Q 012235 319 RIGLDFGVGTGTFAARMREQN------VTIVSTALNLGAPFNEMIALR 360 (467)
Q Consensus 319 r~VLDIGCGtG~~a~~La~~g------~~V~gvdiDiS~~~l~~a~~r 360 (467)
-+|||+=||.|+++.-|.+.| +.++ .++|+.+.+.+..+.+
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv-~AvE~d~~A~~Ty~~N 259 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETR-WAVDFNSFACQSLKYN 259 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEE-EEEESCHHHHHHHHHH
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEE-EEEeCCHHHHHHHHHH
Confidence 379999999999988887665 3333 2366667777666554
No 420
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=45.16 E-value=1.4e+02 Score=30.25 Aligned_cols=37 Identities=5% Similarity=-0.143 Sum_probs=26.3
Q ss_pred eEEEECCCccHHHHHHhhCC--CE-----EEEEecCCCHHHHHHHH
Q 012235 320 IGLDFGVGTGTFAARMREQN--VT-----IVSTALNLGAPFNEMIA 358 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~g--~~-----V~gvdiDiS~~~l~~a~ 358 (467)
+|||+=||.|.+...|.+.| +. |.+ +|+.+.+++...
T Consensus 12 rvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~a--vEid~~A~~ty~ 55 (403)
T 4dkj_A 12 KVFEAFAGIGSQFKALKNIARSKNWEIQHSGM--VEWFVDAIVSYV 55 (403)
T ss_dssp EEEEETCTTCHHHHHHHHHHHHHTEEEEEEEE--ECCBHHHHHHHH
T ss_pred eEEEEecCcCHHHHHHHHhCCccccceeeEEE--EecCHHHHHHHH
Confidence 79999999999999998876 33 344 555555555443
No 421
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=44.62 E-value=1.8e+02 Score=30.08 Aligned_cols=96 Identities=14% Similarity=0.025 Sum_probs=56.7
Q ss_pred CCCCCceEEEECCCc--cHHHHHHhhCCCEEEEEecCCCHH------HHHHHHHcCCcc----------E-EEccCCCCc
Q 012235 314 KPGETRIGLDFGVGT--GTFAARMREQNVTIVSTALNLGAP------FNEMIALRGLIP----------L-YVTLNQRLP 374 (467)
Q Consensus 314 ~~g~~r~VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~------~l~~a~~rg~i~----------~-~~~d~~~Lp 374 (467)
.+..+++|-=||+|+ +.++..+++.|+.|+.+|.+.... .++.+.+++.+. + ...+.+.
T Consensus 50 ~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~a-- 127 (460)
T 3k6j_A 50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHK-- 127 (460)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGG--
T ss_pred CcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHH--
Confidence 344456888899996 477888888899999966554311 122233344321 1 1222221
Q ss_pred cCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 375 FFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 375 f~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
-...|+|+-.-.- +......++.++...++|+..++.
T Consensus 128 --l~~aDlVIeAVpe----~~~vk~~v~~~l~~~~~~~aIlas 164 (460)
T 3k6j_A 128 --LSNCDLIVESVIE----DMKLKKELFANLENICKSTCIFGT 164 (460)
T ss_dssp --CTTCSEEEECCCS----CHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred --HccCCEEEEcCCC----CHHHHHHHHHHHHhhCCCCCEEEe
Confidence 2457888865431 111124678899999999887654
No 422
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=44.32 E-value=92 Score=29.61 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=52.5
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|.=||+|. | .++..|++.|+.|+. .|.++...+.+.+.+.. ....+.... -...|+|+..-.- +..
T Consensus 9 ~I~iIG~G~mG~~~a~~l~~~G~~V~~--~dr~~~~~~~~~~~g~~-~~~~~~~e~---~~~aDvvi~~vp~-----~~~ 77 (303)
T 3g0o_A 9 HVGIVGLGSMGMGAARSCLRAGLSTWG--ADLNPQACANLLAEGAC-GAAASAREF---AGVVDALVILVVN-----AAQ 77 (303)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHHTTCS-EEESSSTTT---TTTCSEEEECCSS-----HHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEE--EECCHHHHHHHHHcCCc-cccCCHHHH---HhcCCEEEEECCC-----HHH
Confidence 677788884 3 566777788999998 46667667777766643 222332222 2346888865432 212
Q ss_pred HHHHH---HHHHhccCCCcEEEE
Q 012235 398 LDFIL---FDWDRILRPGGLLWI 417 (467)
Q Consensus 398 l~~~L---~el~RvLKPGG~LiI 417 (467)
.+.++ .++...|+||..++-
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~ 100 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMV 100 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEE
T ss_pred HHHHHhChhhHHhhCCCCCEEEe
Confidence 33444 556677888776543
No 423
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=43.59 E-value=93 Score=29.00 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=42.2
Q ss_pred eEEEECCCccH--HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGTGT--FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGtG~--~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~ 388 (467)
+||=+|+|.-. -+..|.+.|..|+.++.+..+...+ ..+.+.+.++......-. -..+|+|++.-.
T Consensus 33 ~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~-l~~~~~i~~i~~~~~~~d--L~~adLVIaAT~ 100 (223)
T 3dfz_A 33 SVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINE-WEAKGQLRVKRKKVGEED--LLNVFFIVVATN 100 (223)
T ss_dssp CEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHH-HHHTTSCEEECSCCCGGG--SSSCSEEEECCC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHcCCcEEEECCCCHhH--hCCCCEEEECCC
Confidence 79999998643 3344666699999888887765444 444555666655433211 245899987643
No 424
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=43.45 E-value=1.5e+02 Score=26.97 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=58.2
Q ss_pred ceEEEECCC--cc---HHHHHHhhCCCEEEEEecCCC-HHHHHHHHH-cC--CccEEEccCCCCcc----C------CCc
Q 012235 319 RIGLDFGVG--TG---TFAARMREQNVTIVSTALNLG-APFNEMIAL-RG--LIPLYVTLNQRLPF----F------DNT 379 (467)
Q Consensus 319 r~VLDIGCG--tG---~~a~~La~~g~~V~gvdiDiS-~~~l~~a~~-rg--~i~~~~~d~~~Lpf----~------d~s 379 (467)
+++|=.|++ .| .++..|+++|.+|+.++-+.. ...++.... .+ .+.++..|..+..- . -+.
T Consensus 8 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 87 (266)
T 3oig_A 8 RNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGV 87 (266)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 378888876 44 477888888999988655421 122222222 12 36677787665431 0 136
Q ss_pred cceEEecccccc-------c--cchhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 380 MDLIHTTGFMDG-------W--LDMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 380 FDlVis~~~L~h-------~--~~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
.|+++.+..... + .+.+... .+.+.+...++++|.++...
T Consensus 88 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 88 IHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp CCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred eeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 898887765422 0 1111112 24456677788889887754
No 425
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=42.51 E-value=98 Score=28.72 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=43.7
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecCCCH--HHHHHHHHcC--CccEEEccCCCC-c----cC------CCcc
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALNLGA--PFNEMIALRG--LIPLYVTLNQRL-P----FF------DNTM 380 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~--~~l~~a~~rg--~i~~~~~d~~~L-p----f~------d~sF 380 (467)
++||=.|++.| .++..|+++|.+|+.++-+... ...+.+...+ .+.++..|..+. . +. -+..
T Consensus 13 k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~i 92 (311)
T 3o26_A 13 RCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKL 92 (311)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHSSC
T ss_pred cEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCC
Confidence 37888888766 4667777789999986544321 1222222222 366777787664 2 00 1478
Q ss_pred ceEEecccc
Q 012235 381 DLIHTTGFM 389 (467)
Q Consensus 381 DlVis~~~L 389 (467)
|+++.+...
T Consensus 93 D~lv~nAg~ 101 (311)
T 3o26_A 93 DILVNNAGV 101 (311)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCcc
Confidence 999988765
No 426
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=41.50 E-value=1.2e+02 Score=27.96 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=58.5
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecCC----------CHHHHHHH----HHcC-CccEEEccCCCCcc----C
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALNL----------GAPFNEMI----ALRG-LIPLYVTLNQRLPF----F 376 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiDi----------S~~~l~~a----~~rg-~i~~~~~d~~~Lpf----~ 376 (467)
+++|=.|++.| .++..|+++|..|+.++.+. ....++.+ ...+ .+.++..|..+..- .
T Consensus 11 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 90 (287)
T 3pxx_A 11 KVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSREL 90 (287)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 37888898776 56777888899999866541 12222222 2222 36677777654321 0
Q ss_pred ------CCccceEEeccccccc---cchhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 377 ------DNTMDLIHTTGFMDGW---LDMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 ------d~sFDlVis~~~L~h~---~~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
-+..|+++.+...... .+.+.++ .+.+.+.+.++.+|.++...
T Consensus 91 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 91 ANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 1368999887654221 1111122 34456667777888877653
No 427
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=41.00 E-value=1.2e+02 Score=28.01 Aligned_cols=70 Identities=21% Similarity=0.086 Sum_probs=42.7
Q ss_pred eEEEECCC--cc---HHHHHHhhCCCEEEEEecCCC-HHHHHHHHHc-CCccEEEccCCCCcc----------CCCccce
Q 012235 320 IGLDFGVG--TG---TFAARMREQNVTIVSTALNLG-APFNEMIALR-GLIPLYVTLNQRLPF----------FDNTMDL 382 (467)
Q Consensus 320 ~VLDIGCG--tG---~~a~~La~~g~~V~gvdiDiS-~~~l~~a~~r-g~i~~~~~d~~~Lpf----------~d~sFDl 382 (467)
++|=.|++ .| .++..|+++|.+|+.++-+.. ...++.+... +.+.++..|..+... .-+..|+
T Consensus 8 ~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~ 87 (275)
T 2pd4_A 8 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDF 87 (275)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 78888875 33 456666777999998766542 2233333332 346677777654320 0146899
Q ss_pred EEecccc
Q 012235 383 IHTTGFM 389 (467)
Q Consensus 383 Vis~~~L 389 (467)
++.+...
T Consensus 88 lv~nAg~ 94 (275)
T 2pd4_A 88 IVHSVAF 94 (275)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9887654
No 428
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=40.98 E-value=1.2e+02 Score=27.73 Aligned_cols=101 Identities=10% Similarity=-0.128 Sum_probs=58.2
Q ss_pred ceEEEECCC--cc---HHHHHHhhCCCEEEEEecCCC-HHHHHHH-HHcCCccEEEccCCCCcc----------CCCccc
Q 012235 319 RIGLDFGVG--TG---TFAARMREQNVTIVSTALNLG-APFNEMI-ALRGLIPLYVTLNQRLPF----------FDNTMD 381 (467)
Q Consensus 319 r~VLDIGCG--tG---~~a~~La~~g~~V~gvdiDiS-~~~l~~a-~~rg~i~~~~~d~~~Lpf----------~d~sFD 381 (467)
++||=.|++ .| .++..|+++|..|+.++.+.. ...++.. ...+.+.++..|..+..- .-+..|
T Consensus 15 k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 94 (271)
T 3ek2_A 15 KRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLD 94 (271)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCSCEE
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 488989975 44 466777778999998665421 2223333 233446778887665320 114689
Q ss_pred eEEeccccccc----------cchhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGW----------LDMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~----------~~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
+++.+...... .+.+.++ .+.+.+.+.++++|.++...
T Consensus 95 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 95 GLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp EEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 99987655321 1221122 23445566677788877654
No 429
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=40.83 E-value=1.5e+02 Score=27.84 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=58.4
Q ss_pred ceEEEECCCc--c---HHHHHHhhCCCEEEEEecCCCH-HHHH-HHHHcCCccEEEccCCCCcc----C------CCccc
Q 012235 319 RIGLDFGVGT--G---TFAARMREQNVTIVSTALNLGA-PFNE-MIALRGLIPLYVTLNQRLPF----F------DNTMD 381 (467)
Q Consensus 319 r~VLDIGCGt--G---~~a~~La~~g~~V~gvdiDiS~-~~l~-~a~~rg~i~~~~~d~~~Lpf----~------d~sFD 381 (467)
+++|=.|++. | .++..|+++|..|+.++.+... ..++ .....+.+.++..|..+..- . -+..|
T Consensus 31 k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 110 (296)
T 3k31_A 31 KKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGSLD 110 (296)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3788888753 3 4777888889999986655321 1222 22333445677777655320 0 14689
Q ss_pred eEEeccccccc---------cchhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGW---------LDMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~---------~~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
+++.+...... .+.+.++ .+.+.+.+.++.+|.++...
T Consensus 111 ~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 111 FVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp EEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred EEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 99987655321 1111111 34455666777789887754
No 430
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=40.02 E-value=1.6e+02 Score=27.57 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=51.4
Q ss_pred eEEEECC-Cc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 320 IGLDFGV-GT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGC-Gt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
+|.=||+ |. | .++..|++.|++|+. .|.++...+.+.+.+ +.. .+ ..-.-...|+|+..-...
T Consensus 13 ~I~iIG~tG~mG~~la~~l~~~g~~V~~--~~r~~~~~~~~~~~g-~~~--~~---~~~~~~~aDvVi~av~~~------ 78 (286)
T 3c24_A 13 TVAILGAGGKMGARITRKIHDSAHHLAA--IEIAPEGRDRLQGMG-IPL--TD---GDGWIDEADVVVLALPDN------ 78 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSSSEEEE--ECCSHHHHHHHHHTT-CCC--CC---SSGGGGTCSEEEECSCHH------
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEE--EECCHHHHHHHHhcC-CCc--CC---HHHHhcCCCEEEEcCCch------
Confidence 6788999 84 3 566777788999988 455565566555544 221 11 111124579888655431
Q ss_pred hHHHHHHHHHhccCCCcEEE
Q 012235 397 LLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~Li 416 (467)
....++.++...++||..++
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEE
T ss_pred HHHHHHHHHHHhCCCCCEEE
Confidence 13567888888888876543
No 431
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=39.87 E-value=29 Score=21.10 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012235 75 VLNRMESLQDKLEKTVQQ 92 (467)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ 92 (467)
||+-|..+|+|..+...|
T Consensus 2 vlrtitnlqkkirkelkq 19 (26)
T 1m46_B 2 VLRTITNLQKKIRKELKQ 19 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999998865544
No 432
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=39.29 E-value=14 Score=31.66 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=27.5
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 012235 6 FPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAA 40 (467)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (467)
-|.--..|++..+.+++|+.++...++.+......
T Consensus 61 ~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 61 YPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666789999999999998888888887765533
No 433
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=39.13 E-value=95 Score=29.31 Aligned_cols=100 Identities=12% Similarity=0.016 Sum_probs=57.5
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHH----HHcC-CccEEEccCCCCcc----------CCCccc
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMI----ALRG-LIPLYVTLNQRLPF----------FDNTMD 381 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a----~~rg-~i~~~~~d~~~Lpf----------~d~sFD 381 (467)
++|=.|++.| .++..|+++|..|+.++.+......+.+ ...+ .+.++.+|..+... .-+..|
T Consensus 51 ~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 130 (294)
T 3r3s_A 51 KALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGGLD 130 (294)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 7888898776 5667777889999886554333222222 2223 35566666554320 014689
Q ss_pred eEEecccccc-cc-----chhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDG-WL-----DMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h-~~-----~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
+++.+..... .. +.+.++ .+.+.+...++.+|.++...
T Consensus 131 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 131 ILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp EEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred EEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 9887765422 11 111111 34456667788889887754
No 434
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=38.86 E-value=73 Score=30.13 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=51.1
Q ss_pred ceEEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-----------C--C-----------ccEEEccCCC
Q 012235 319 RIGLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIALR-----------G--L-----------IPLYVTLNQR 372 (467)
Q Consensus 319 r~VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-----------g--~-----------i~~~~~d~~~ 372 (467)
++|.=||+|. +.++..++..|+.|+.+ |.+++.++.+.++ + . +. ...+...
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~-~~~~~~~ 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAY--DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIR-YSDDLAQ 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEE--CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCE-EESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeE-EeCCHHH
Confidence 3677788885 25667777789999984 5555555544332 1 1 11 1112111
Q ss_pred CccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 373 LPFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 373 Lpf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
.-...|+|+..-.- . .+....++.++...++|+..++
T Consensus 82 ---~~~~aDlVi~av~~-~---~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 82 ---AVKDADLVIEAVPE-S---LDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp ---HTTTCSEEEECCCS-C---HHHHHHHHHHHHHHSCTTCEEE
T ss_pred ---HhccCCEEEEeccC-c---HHHHHHHHHHHHhhCCCCcEEE
Confidence 12357888865432 1 1123567889999999887654
No 435
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=38.62 E-value=1.2e+02 Score=28.21 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=55.2
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHH---HHHHHHcC-CccEEEccCCCCc-----cC-----CCccce
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPF---NEMIALRG-LIPLYVTLNQRLP-----FF-----DNTMDL 382 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~---l~~a~~rg-~i~~~~~d~~~Lp-----f~-----d~sFDl 382 (467)
++|=.|++.| .++..|+++|.+|+.++.+..... .+.+...+ .+.++..|..+.. +. -+..|+
T Consensus 31 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 110 (283)
T 1g0o_A 31 VALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDI 110 (283)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7787787666 456666777999988665532211 22223333 3566677755432 00 136899
Q ss_pred EEecccccccc-----chhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWL-----DMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~-----~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
++.+....... +.+.++ .+++.+.+.++.+|.++...
T Consensus 111 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 111 VCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 98876543221 111111 23455666667778877754
No 436
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=38.59 E-value=1.5e+02 Score=27.17 Aligned_cols=70 Identities=16% Similarity=-0.095 Sum_probs=41.6
Q ss_pred eEEEECCC--cc---HHHHHHhhCCCEEEEEecCCC-HHHHHHHHHc-CCccEEEccCCCCcc----------CCCccce
Q 012235 320 IGLDFGVG--TG---TFAARMREQNVTIVSTALNLG-APFNEMIALR-GLIPLYVTLNQRLPF----------FDNTMDL 382 (467)
Q Consensus 320 ~VLDIGCG--tG---~~a~~La~~g~~V~gvdiDiS-~~~l~~a~~r-g~i~~~~~d~~~Lpf----------~d~sFDl 382 (467)
++|=.|++ .| .++..|+++|.+|+.++.+.. ...++.+... +...++.+|..+... .-+..|+
T Consensus 11 ~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~ 90 (265)
T 1qsg_A 11 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDG 90 (265)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSSEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 78888875 33 455666777999998665531 1333333332 334667777654320 1136899
Q ss_pred EEecccc
Q 012235 383 IHTTGFM 389 (467)
Q Consensus 383 Vis~~~L 389 (467)
++.+...
T Consensus 91 lv~~Ag~ 97 (265)
T 1qsg_A 91 FVHSIGF 97 (265)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9887654
No 437
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=38.44 E-value=1.2e+02 Score=29.04 Aligned_cols=85 Identities=7% Similarity=-0.181 Sum_probs=51.3
Q ss_pred eEEEECCCccHHHHHHhh----CCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARMRE----QNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~----~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~d~sFDlVis~~~L~h 391 (467)
+++=+|+ |.++..+++ .|. ++. +|.+++..+ +...+ +.++.+|..+.. ..-...|.|++...
T Consensus 117 ~viI~G~--G~~g~~l~~~L~~~g~-v~v--id~~~~~~~-~~~~~-~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~--- 186 (336)
T 1lnq_A 117 HVVICGW--SESTLECLRELRGSEV-FVL--AEDENVRKK-VLRSG-ANFVHGDPTRVSDLEKANVRGARAVIVDLE--- 186 (336)
T ss_dssp EEEEESC--CHHHHHHHTTGGGSCE-EEE--ESCGGGHHH-HHHTT-CEEEESCTTSHHHHHHTCSTTEEEEEECCS---
T ss_pred CEEEECC--cHHHHHHHHHHHhCCc-EEE--EeCChhhhh-HHhCC-cEEEEeCCCCHHHHHhcChhhccEEEEcCC---
Confidence 6777776 555555554 477 777 555566666 55444 678899876543 12346788776542
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
++ ..........|-+.|...++.
T Consensus 187 --~d-~~n~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 187 --SD-SETIHCILGIRKIDESVRIIA 209 (336)
T ss_dssp --SH-HHHHHHHHHHHTTCTTSEEEE
T ss_pred --cc-HHHHHHHHHHHHHCCCCeEEE
Confidence 12 122345566777788776555
No 438
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=38.43 E-value=2e+02 Score=26.72 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=51.5
Q ss_pred eEEEECCCc--cHHHHHHhhC--CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 320 IGLDFGVGT--GTFAARMREQ--NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 320 ~VLDIGCGt--G~~a~~La~~--g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|.=||+|. +.++..|++. +.+|++ .|.++...+.+.+.+.......+.... -...|+|+..-...
T Consensus 8 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~--~d~~~~~~~~~~~~g~~~~~~~~~~~~---~~~aDvVilavp~~----- 77 (290)
T 3b1f_A 8 TIYIAGLGLIGASLALGIKRDHPHYKIVG--YNRSDRSRDIALERGIVDEATADFKVF---AALADVIILAVPIK----- 77 (290)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHHTTSCSEEESCTTTT---GGGCSEEEECSCHH-----
T ss_pred eEEEEeeCHHHHHHHHHHHhCCCCcEEEE--EcCCHHHHHHHHHcCCcccccCCHHHh---hcCCCEEEEcCCHH-----
Confidence 677789886 3556666666 578888 455566666666555432222332221 23578888655431
Q ss_pred hhHHHHHHHHHhc-cCCCcEEE
Q 012235 396 LLLDFILFDWDRI-LRPGGLLW 416 (467)
Q Consensus 396 ~~l~~~L~el~Rv-LKPGG~Li 416 (467)
....++.++... |++|..++
T Consensus 78 -~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 78 -KTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp -HHHHHHHHHHTSCCCTTCEEE
T ss_pred -HHHHHHHHHHhcCCCCCCEEE
Confidence 124677888888 88876544
No 439
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=38.42 E-value=1.3e+02 Score=27.79 Aligned_cols=68 Identities=9% Similarity=-0.051 Sum_probs=42.2
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHc--CCccEEEccCCCCc-----cC-----CCccceEE
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLP-----FF-----DNTMDLIH 384 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lp-----f~-----d~sFDlVi 384 (467)
++|=.|++.| .++..|+++|.+|+.++ .+...++.+.+. ..+.++..|..+.. +. -+..|+++
T Consensus 8 ~vlITGas~gIG~aia~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv 85 (263)
T 2a4k_A 8 TILVTGAASGIGRAALDLFAREGASLVAVD--REERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVA 85 (263)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 7888887766 56667777899999854 444444444332 23556677765432 00 13579999
Q ss_pred ecccc
Q 012235 385 TTGFM 389 (467)
Q Consensus 385 s~~~L 389 (467)
.+...
T Consensus 86 nnAg~ 90 (263)
T 2a4k_A 86 HFAGV 90 (263)
T ss_dssp EGGGG
T ss_pred ECCCC
Confidence 87654
No 440
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=38.29 E-value=1.6e+02 Score=30.24 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=52.9
Q ss_pred CceEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHH-----------cCCc---------cEEEccCCCCcc
Q 012235 318 TRIGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIAL-----------RGLI---------PLYVTLNQRLPF 375 (467)
Q Consensus 318 ~r~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~-----------rg~i---------~~~~~d~~~Lpf 375 (467)
+++|.=||+|. | .++..+++.|+.|+.+ |.++..++.+.+ ++.+ ..+..+.+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~--D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--- 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAV--ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE--- 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEE--CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGG---
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEE--ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHH---
Confidence 45788999997 3 6777888889999985 555544443322 1110 011222211
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
-...|+|+..-.- +......++.++..+++||..++.
T Consensus 112 -~~~aDlVIeaVpe----~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 -LSTVDLVVEAVFE----DMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp -GTTCSEEEECCCS----CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -HCCCCEEEEcCCC----CHHHHHHHHHHHHhhCCCCeEEEe
Confidence 2457888865431 111124678889999988876543
No 441
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=37.69 E-value=1.3e+02 Score=28.28 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=57.1
Q ss_pred eEEEECCC--cc---HHHHHHhhCCCEEEEEecCCCHHHHH---HH-HHcCCccEEEccCCCCc----c------CCCcc
Q 012235 320 IGLDFGVG--TG---TFAARMREQNVTIVSTALNLGAPFNE---MI-ALRGLIPLYVTLNQRLP----F------FDNTM 380 (467)
Q Consensus 320 ~VLDIGCG--tG---~~a~~La~~g~~V~gvdiDiS~~~l~---~a-~~rg~i~~~~~d~~~Lp----f------~d~sF 380 (467)
++|=.|++ .| .++..|+++|..|+.++.+ ....+ .. ...+.+.++..|..+.. + .-+..
T Consensus 33 ~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 110 (293)
T 3grk_A 33 RGLILGVANNRSIAWGIAKAAREAGAELAFTYQG--DALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGKL 110 (293)
T ss_dssp EEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECS--HHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 78889976 33 5677788889999885544 32222 22 22344667777765432 0 11468
Q ss_pred ceEEecccccc---------ccchhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 381 DLIHTTGFMDG---------WLDMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 381 DlVis~~~L~h---------~~~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
|+++.+..... -.+.+.++ .+.+.+.+.++.+|.++...
T Consensus 111 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 111 DFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp SEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 99998765532 01111111 34456666777889887754
No 442
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=37.15 E-value=1.5e+02 Score=27.94 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=57.9
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHH---HHHHcC-CccEEEccCCCCcc----------CCCccce
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNE---MIALRG-LIPLYVTLNQRLPF----------FDNTMDL 382 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~---~a~~rg-~i~~~~~d~~~Lpf----------~d~sFDl 382 (467)
++|=.|++.| .++..|+++|.+|+.++.+....... .....+ .+.++.+|..+..- .-+..|+
T Consensus 49 ~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 128 (291)
T 3ijr_A 49 NVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNI 128 (291)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSSCCE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888898776 56677788899998866654322211 112222 36677777654320 0136899
Q ss_pred EEeccccccc------cchhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGW------LDMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~------~~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
++.+...... .+.+.++ .+.+.+.+.++.+|.++...
T Consensus 129 lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 129 LVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp EEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred EEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 9877543211 0111111 34556677788889877653
No 443
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=36.56 E-value=1.4e+02 Score=27.67 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=58.6
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHH---HHHHHHcC-CccEEEccCCCCcc----------CCCccc
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPF---NEMIALRG-LIPLYVTLNQRLPF----------FDNTMD 381 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~---l~~a~~rg-~i~~~~~d~~~Lpf----------~d~sFD 381 (467)
+++|=.|++.| .++..|+++|.+|+.++....... .+.+...+ .+.++..|..+..- .-+..|
T Consensus 19 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 98 (270)
T 3is3_A 19 KVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLD 98 (270)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 37888888776 466777788999987544332222 22222223 36677777655321 013689
Q ss_pred eEEecccccccc-----chhhHH-----------HHHHHHHhccCCCcEEEEEec
Q 012235 382 LIHTTGFMDGWL-----DMLLLD-----------FILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 382 lVis~~~L~h~~-----~~~~l~-----------~~L~el~RvLKPGG~LiI~~~ 420 (467)
+++.+....+.. +.+.++ .+.+.+.+.++++|.+++..-
T Consensus 99 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 99 IAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 988776543221 111111 344567777888898877543
No 444
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=36.23 E-value=1.6e+02 Score=23.44 Aligned_cols=106 Identities=10% Similarity=0.002 Sum_probs=57.4
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cCCCccceEEecccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~d~sFDlVis~~~L~h~~ 393 (467)
+|+=+|+|. | .++..|.+.|..|+.++ .++...+.+.+...+.++.++..... ..-...|+|+....-
T Consensus 6 ~i~IiG~G~iG~~~a~~L~~~g~~v~~~d--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~---- 79 (140)
T 1lss_A 6 YIIIAGIGRVGYTLAKSLSEKGHDIVLID--IDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK---- 79 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC----
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEE--CCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCC----
Confidence 677888764 2 34455566689998854 45555555554423456666654321 113468988876432
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
+ .....+.++.+.+.++ .+++.. ... ...+.+++.|..
T Consensus 80 -~-~~~~~~~~~~~~~~~~-~ii~~~---~~~---~~~~~l~~~g~~ 117 (140)
T 1lss_A 80 -E-EVNLMSSLLAKSYGIN-KTIARI---SEI---EYKDVFERLGVD 117 (140)
T ss_dssp -H-HHHHHHHHHHHHTTCC-CEEEEC---SST---THHHHHHHTTCS
T ss_pred -c-hHHHHHHHHHHHcCCC-EEEEEe---cCH---hHHHHHHHcCCC
Confidence 1 1123455666777775 444321 111 234466777753
No 445
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=36.04 E-value=1.1e+02 Score=29.38 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=52.8
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEc----------cCCCCccCCCccceEEecc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVT----------LNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~----------d~~~Lpf~d~sFDlVis~~ 387 (467)
+|.=||+|. | .++..|++.|.+|+. +|.++...+.+.+.+.+.+... ...++.-.-...|+|+..-
T Consensus 6 ki~iiG~G~~G~~~a~~L~~~g~~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 83 (359)
T 1bg6_A 6 TYAVLGLGNGGHAFAAYLALKGQSVLA--WDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 83 (359)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEE--EeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence 678889986 3 566777778999888 5566666666665532211100 0001100013578888655
Q ss_pred ccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 388 FMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 388 ~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
.-.. ...++.++...+++|..++.
T Consensus 84 ~~~~------~~~~~~~l~~~l~~~~~vv~ 107 (359)
T 1bg6_A 84 PAIH------HASIAANIASYISEGQLIIL 107 (359)
T ss_dssp CGGG------HHHHHHHHGGGCCTTCEEEE
T ss_pred CchH------HHHHHHHHHHhCCCCCEEEE
Confidence 4311 24678888889998776544
No 446
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=35.99 E-value=54 Score=41.31 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=58.5
Q ss_pred cCCCCCCceEEEECC--CccHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHc----CCccEEEccCCCC-----c-cCCC
Q 012235 312 AIKPGETRIGLDFGV--GTGTFAARMREQ-NVTIVSTALNLGAPFNEMIALR----GLIPLYVTLNQRL-----P-FFDN 378 (467)
Q Consensus 312 ~l~~g~~r~VLDIGC--GtG~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~r----g~i~~~~~d~~~L-----p-f~d~ 378 (467)
.+++|+ +||=.|+ |.|..+..+++. |..|+++ +.+....+.+.+. +...++......+ . ....
T Consensus 1664 ~l~~Ge--~VLI~gaaGgVG~aAiqlAk~~Ga~Viat--~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~ 1739 (2512)
T 2vz8_A 1664 RMQPGE--SVLIHSGSGGVGQAAIAIALSRGCRVFTT--VGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGK 1739 (2512)
T ss_dssp CCCTTC--EEEETTTTSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSC
T ss_pred cCCCCC--EEEEEeCChHHHHHHHHHHHHcCCEEEEE--eCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCC
Confidence 456676 8888863 567777777765 8888874 3455556666552 2233333221111 1 1124
Q ss_pred ccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEEE
Q 012235 379 TMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 379 sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.+|+|+-... ...+....++|+|||.++..
T Consensus 1740 GvDvVld~~g----------~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1740 GVDLVLNSLA----------EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp CEEEEEECCC----------HHHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEECCC----------chHHHHHHHhcCCCcEEEEe
Confidence 6999986432 24688889999999998764
No 447
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=35.86 E-value=1.1e+02 Score=28.52 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=57.0
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHH---HHHHcC-CccEEEccCCCCcc----C------CCccce
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNE---MIALRG-LIPLYVTLNQRLPF----F------DNTMDL 382 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~---~a~~rg-~i~~~~~d~~~Lpf----~------d~sFDl 382 (467)
++|=.|++.| .++..|+++|..|+.++-.......+ .+...+ .+.++..|..+..- . -+..|+
T Consensus 29 ~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~ 108 (267)
T 3u5t_A 29 VAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDV 108 (267)
T ss_dssp EEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888888777 46677778899988753333322221 222223 35667777654320 0 146899
Q ss_pred EEecccccccc-----chhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 383 IHTTGFMDGWL-----DMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 383 Vis~~~L~h~~-----~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
++.+....... +.+.++ .+++.+.+.++++|.++...
T Consensus 109 lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 109 LVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 98876542211 111111 24556667777888887754
No 448
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=35.61 E-value=1e+02 Score=27.89 Aligned_cols=85 Identities=8% Similarity=-0.150 Sum_probs=50.5
Q ss_pred eEEEECCCccHHHHHH----hhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cCCCccceEEecccccc
Q 012235 320 IGLDFGVGTGTFAARM----REQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~L----a~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~d~sFDlVis~~~L~h 391 (467)
+++=+|+| .++..+ .+.|. |+. +|.++...+.+. .+ +.++.+|..+.. ..-...|+|++...-
T Consensus 11 ~viI~G~G--~~G~~la~~L~~~g~-v~v--id~~~~~~~~~~-~~-~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~-- 81 (234)
T 2aef_A 11 HVVICGWS--ESTLECLRELRGSEV-FVL--AEDENVRKKVLR-SG-ANFVHGDPTRVSDLEKANVRGARAVIVDLES-- 81 (234)
T ss_dssp EEEEESCC--HHHHHHHHHSTTSEE-EEE--ESCGGGHHHHHH-TT-CEEEESCTTCHHHHHHTTCTTCSEEEECCSC--
T ss_pred EEEEECCC--hHHHHHHHHHHhCCe-EEE--EECCHHHHHHHh-cC-CeEEEcCCCCHHHHHhcCcchhcEEEEcCCC--
Confidence 68888885 444444 44477 777 455555555555 44 678888876432 113467888875432
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+ .....+....+-+.|+..++.
T Consensus 82 ---d-~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 82 ---D-SETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp ---H-HHHHHHHHHHHHHCSSSEEEE
T ss_pred ---c-HHHHHHHHHHHHHCCCCeEEE
Confidence 1 122445566777788766655
No 449
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=34.68 E-value=77 Score=22.78 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHhhhhhccchhhhhcHHHHHHHHHHH
Q 012235 70 DRVGEVLN---RMESLQDKLEKTVQQLEKEKDALDKTITRLEYKNFLEVE 116 (467)
Q Consensus 70 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (467)
.+|++||+ +|+-||++.+..+..+.. .|..+.++.=..|
T Consensus 3 rQ~EEILRLErEIE~Lqrqke~~~~~L~e--------~s~~eL~~~RD~E 44 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRMKEQQELSLTE--------ASLQKLQERRDQE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT--------THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------hHHHHHHHHHHHH
Confidence 57888885 899999988866665552 4566666554444
No 450
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=34.66 E-value=1.6e+02 Score=23.66 Aligned_cols=106 Identities=6% Similarity=-0.003 Sum_probs=53.3
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc----cCCCccceEEecccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP----FFDNTMDLIHTTGFMDGWL 393 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp----f~d~sFDlVis~~~L~h~~ 393 (467)
+|+=+|+|. | .++..|.+.|..|+.++. ++...+.+...+ ..++.+|..+.. ..-+.+|+|+....-. .
T Consensus 8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~--~~~~~~~~~~~~-~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~-~- 82 (144)
T 2hmt_A 8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDI--NEEKVNAYASYA-THAVIANATEENELLSLGIRNFEYVIVAIGAN-I- 82 (144)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEES--CHHHHHTTTTTC-SEEEECCTTCHHHHHTTTGGGCSEEEECCCSC-H-
T ss_pred cEEEECCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHhC-CEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc-h-
Confidence 688899753 2 333444556888888554 444444333333 345566644321 1124689888755431 0
Q ss_pred chhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCce
Q 012235 394 DMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYK 440 (467)
Q Consensus 394 ~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf~ 440 (467)
. ....+.+..+.+.+. .++... .+. ...+.++++|..
T Consensus 83 -~--~~~~~~~~~~~~~~~-~ii~~~-----~~~-~~~~~l~~~g~~ 119 (144)
T 2hmt_A 83 -Q--ASTLTTLLLKELDIP-NIWVKA-----QNY-YHHKVLEKIGAD 119 (144)
T ss_dssp -H--HHHHHHHHHHHTTCS-EEEEEC-----CSH-HHHHHHHHHTCS
T ss_pred -H--HHHHHHHHHHHcCCC-eEEEEe-----CCH-HHHHHHHHcCCC
Confidence 1 123444555566675 544411 112 334556666654
No 451
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=33.49 E-value=12 Score=33.17 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=28.1
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 012235 6 FPKFRLSRAMAWLQLVLGGLVIVVSISSLFRFYAAG 41 (467)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (467)
.|.--..|++..+.+++|+.++...++.+..+....
T Consensus 88 ~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 88 YPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp CCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567789999999999999888888887666543
No 452
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=32.93 E-value=66 Score=31.12 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=37.6
Q ss_pred eEEEECCCc-cH--HHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecc
Q 012235 320 IGLDFGVGT-GT--FAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGt-G~--~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+|-=||||. |. +...+.+. +++++++ .|.+++..+.++++..++-...|.+.+ +.+...|+|+..-
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav-~d~~~~~a~~~a~~~g~~~~y~d~~el-l~~~~iDaV~I~t 94 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENCVVTAI-ASRDLTRAREMADRFSVPHAFGSYEEM-LASDVIDAVYIPL 94 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSEEEEEE-ECSSHHHHHHHHHHHTCSEEESSHHHH-HHCSSCSEEEECS
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCeEEEEE-ECCCHHHHHHHHHHcCCCeeeCCHHHH-hcCCCCCEEEEeC
Confidence 455689985 42 23344443 6778775 466666555555543344444454443 2355789988654
No 453
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=32.89 E-value=1.6e+02 Score=30.90 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=47.7
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchh
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDML 396 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~ 396 (467)
+|+=+|+| | ..+..++..|..|+.++ .++.....+...+. ...+... .....|+|+....-.+...
T Consensus 267 tVvVtGaG-gIG~aiA~~Laa~GA~Viv~D--~~~~~a~~Aa~~g~---dv~~lee---~~~~aDvVi~atG~~~vl~-- 335 (488)
T 3ond_A 267 VAVVAGYG-DVGKGCAAALKQAGARVIVTE--IDPICALQATMEGL---QVLTLED---VVSEADIFVTTTGNKDIIM-- 335 (488)
T ss_dssp EEEEECCS-HHHHHHHHHHHHTTCEEEEEC--SCHHHHHHHHHTTC---EECCGGG---TTTTCSEEEECSSCSCSBC--
T ss_pred EEEEECCC-HHHHHHHHHHHHCCCEEEEEc--CCHHHHHHHHHhCC---ccCCHHH---HHHhcCEEEeCCCChhhhh--
Confidence 88899988 4 45555666699999854 44544444544442 1222222 2346898876543323222
Q ss_pred hHHHHHHHHHhccCCCcEEEEE
Q 012235 397 LLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 397 ~l~~~L~el~RvLKPGG~LiI~ 418 (467)
.+..+.+|+|+.++-.
T Consensus 336 ------~e~l~~mk~gaiVvNa 351 (488)
T 3ond_A 336 ------LDHMKKMKNNAIVCNI 351 (488)
T ss_dssp ------HHHHTTSCTTEEEEES
T ss_pred ------HHHHHhcCCCeEEEEc
Confidence 2356778999876553
No 454
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=32.59 E-value=96 Score=32.09 Aligned_cols=67 Identities=13% Similarity=0.214 Sum_probs=43.5
Q ss_pred CceEEEECC-CccH--HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccc
Q 012235 318 TRIGLDFGV-GTGT--FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 318 ~r~VLDIGC-GtG~--~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
.++|+=||- |+|. .+..|.++|+.|++.|...++ ..+...+.| +.+..+.... .+ ..+|+|+.+..+
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~-~~~~l~~~g-i~~~~g~~~~-~~--~~~d~vV~Spgi 91 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNS-VTQHLTALG-AQIYFHHRPE-NV--LDASVVVVSTAI 91 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHHTT-CEEESSCCGG-GG--TTCSEEEECTTS
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCH-HHHHHHHCC-CEEECCCCHH-Hc--CCCCEEEECCCC
Confidence 457888884 5674 577788889999998776543 445555555 5555542111 11 348999987766
No 455
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=32.31 E-value=95 Score=29.10 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=43.2
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHH---HHHHHcC-CccEEEccCCCCcc----C------CCccc
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFN---EMIALRG-LIPLYVTLNQRLPF----F------DNTMD 381 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l---~~a~~rg-~i~~~~~d~~~Lpf----~------d~sFD 381 (467)
+++|=.|++.| .++..|+++|..|+.++........ +.+...+ .+.++..|..+... . -+..|
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 109 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRID 109 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHSCCC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 37888898777 4677788889999886543222221 2222223 36677777665431 0 13689
Q ss_pred eEEecccc
Q 012235 382 LIHTTGFM 389 (467)
Q Consensus 382 lVis~~~L 389 (467)
+++.+...
T Consensus 110 ~lvnnAg~ 117 (280)
T 4da9_A 110 CLVNNAGI 117 (280)
T ss_dssp EEEEECC-
T ss_pred EEEECCCc
Confidence 99987655
No 456
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=32.25 E-value=99 Score=27.97 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=53.9
Q ss_pred ceEEEECCCcc---HHHHHHhh-CCCEEEEEecCCCH--HHHHHHHHcC-CccEEEccCCCCcc----C------CCccc
Q 012235 319 RIGLDFGVGTG---TFAARMRE-QNVTIVSTALNLGA--PFNEMIALRG-LIPLYVTLNQRLPF----F------DNTMD 381 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~-~g~~V~gvdiDiS~--~~l~~a~~rg-~i~~~~~d~~~Lpf----~------d~sFD 381 (467)
++||=.|++.| .++..|++ .|.+|+.++-+... ...+.+...+ .+.++.+|..+... . -+.+|
T Consensus 5 k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 84 (276)
T 1wma_A 5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 84 (276)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 37787776544 45566677 79999886544221 1122222223 46777787665321 0 13689
Q ss_pred eEEecccccccc----c-hhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 382 LIHTTGFMDGWL----D-MLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 382 lVis~~~L~h~~----~-~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
+|+.+....... . .+..+ .+++.+.+.++++|.+++..
T Consensus 85 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 85 VLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp EEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 988765432110 0 11111 24445566666778877753
No 457
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=31.09 E-value=2.4e+02 Score=26.16 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=53.4
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEc-----------cCCCCccCCCccceEEec
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVT-----------LNQRLPFFDNTMDLIHTT 386 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~-----------d~~~Lpf~d~sFDlVis~ 386 (467)
+|.=||+|. | .++..|++.|++|+. .|.++...+.+.+.+. ..... +...+.-.-...|+|+..
T Consensus 5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~--~~r~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 81 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLHQGGNDVTL--IDQWPAHIEAIRKNGL-IADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL 81 (316)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHHHCE-EEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCcEEE--EECCHHHHHHHHhCCE-EEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence 678899985 3 566777778999988 5555666666666552 22110 100110001268888875
Q ss_pred cccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 387 GFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 387 ~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
-.-. ..+.++.++...++|+..++.
T Consensus 82 v~~~------~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 82 TKAQ------QLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp SCHH------HHHHHHHHHGGGCCTTCEEEE
T ss_pred eccc------cHHHHHHHHHHhcCCCCEEEE
Confidence 5431 235788888888988776544
No 458
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=31.09 E-value=2e+02 Score=24.85 Aligned_cols=65 Identities=11% Similarity=-0.057 Sum_probs=38.2
Q ss_pred eEEEECCCccH----HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc-CCCccceEEecccc
Q 012235 320 IGLDFGVGTGT----FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF-FDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~----~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf-~d~sFDlVis~~~L 389 (467)
+||=+|+ +|. ++..|+++|.+|++++-+ +...+... ..+.++.+|..+... .-..+|+|+.+...
T Consensus 2 kvlVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~--~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 2 KIGIIGA-TGRAGSRILEEAKNRGHEVTAIVRN--AGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESC--SHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred eEEEEcC-CchhHHHHHHHHHhCCCEEEEEEcC--chhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 4666664 343 445556679999986544 33233222 447788888665431 11458999987655
No 459
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}
Probab=30.95 E-value=36 Score=33.74 Aligned_cols=71 Identities=7% Similarity=0.115 Sum_probs=42.1
Q ss_pred CCCCCceEEEECCCc---cHHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCc------cCCCccceE
Q 012235 314 KPGETRIGLDFGVGT---GTFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLP------FFDNTMDLI 383 (467)
Q Consensus 314 ~~g~~r~VLDIGCGt---G~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lp------f~d~sFDlV 383 (467)
.+++ +||=+|+|. |..+..+++. |.+|+++ +.++..++.+.+.|.-.++.....++. .....+|+|
T Consensus 169 ~~g~--~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v 244 (379)
T 3iup_A 169 LEGH--SALVHTAAASNLGQMLNQICLKDGIKLVNI--VRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIA 244 (379)
T ss_dssp HTTC--SCEEESSTTSHHHHHHHHHHHHHTCCEEEE--ESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred cCCC--EEEEECCCCCHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHhcCCCceEE
Confidence 4565 788886554 4555666654 8888884 456777777777665444443322221 112368999
Q ss_pred Eeccc
Q 012235 384 HTTGF 388 (467)
Q Consensus 384 is~~~ 388 (467)
+-.-.
T Consensus 245 ~d~~g 249 (379)
T 3iup_A 245 FDATG 249 (379)
T ss_dssp EESCE
T ss_pred EECCC
Confidence 86543
No 460
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=30.70 E-value=2.3e+02 Score=29.35 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=52.7
Q ss_pred eEEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHH-----------cCCcc----------EE-EccCCCCcc
Q 012235 320 IGLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIAL-----------RGLIP----------LY-VTLNQRLPF 375 (467)
Q Consensus 320 ~VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~-----------rg~i~----------~~-~~d~~~Lpf 375 (467)
+|-=||+|. +.++..+++.|+.|+. .|.+++.++.+.+ ++.+. +. ..+.+.
T Consensus 7 kVgVIGaG~MG~~IA~~la~aG~~V~l--~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 81 (483)
T 3mog_A 7 TVAVIGSGTMGAGIAEVAASHGHQVLL--YDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA--- 81 (483)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEE--ECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG---
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEE--EECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH---
Confidence 566688886 3677788888999999 5556666555432 23211 11 122221
Q ss_pred CCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 376 FDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 376 ~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
-..-|+|+..-.- +......++.++...++|+..++.
T Consensus 82 -~~~aDlVIeAVpe----~~~vk~~v~~~l~~~~~~~~Ilas 118 (483)
T 3mog_A 82 -LAAADLVIEAASE----RLEVKKALFAQLAEVCPPQTLLTT 118 (483)
T ss_dssp -GGGCSEEEECCCC----CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -hcCCCEEEEcCCC----cHHHHHHHHHHHHHhhccCcEEEe
Confidence 2356888764321 111124788999999999887644
No 461
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=30.50 E-value=23 Score=34.63 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHH
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQ 436 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~ 436 (467)
..++.+|..+.++|+|||.+++.+|....+.. +...++.
T Consensus 210 ~~L~~~L~~a~~~L~~gGrl~visfHSLEDRi--VK~~~~~ 248 (285)
T 1wg8_A 210 NALKEFLEQAAEVLAPGGRLVVIAFHSLEDRV--VKRFLRE 248 (285)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEECSHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHH--HHHHHHh
Confidence 34678999999999999999999987755433 3444443
No 462
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=30.32 E-value=1.4e+02 Score=27.03 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=39.2
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHc------------CCccEEEccCCCCcc----CC---
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALR------------GLIPLYVTLNQRLPF----FD--- 377 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r------------g~i~~~~~d~~~Lpf----~d--- 377 (467)
+||=.|++.| .++..|+++|.+|+.++- +....+...+. ..+.++.+|..+... ..
T Consensus 9 ~vlITGasggiG~~la~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 86 (264)
T 2pd6_A 9 LALVTGAGSGIGRAVSVRLAGEGATVAACDL--DRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQVQ 86 (264)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC--ChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHHH
Confidence 7888887666 456667777999998554 34333332211 235667777654320 00
Q ss_pred ---Ccc-ceEEecccc
Q 012235 378 ---NTM-DLIHTTGFM 389 (467)
Q Consensus 378 ---~sF-DlVis~~~L 389 (467)
+.. |+|+.+...
T Consensus 87 ~~~g~i~d~vi~~Ag~ 102 (264)
T 2pd6_A 87 ACFSRPPSVVVSCAGI 102 (264)
T ss_dssp HHHSSCCSEEEECCCC
T ss_pred HHhCCCCeEEEECCCc
Confidence 233 998877654
No 463
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=30.20 E-value=1.1e+02 Score=29.08 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=51.4
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|-=||+|. | .++..|++.|++|+++|.+ +...+.+.+.+. .+ ..+...+ -. .|+|+..-.- +..
T Consensus 17 ~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~--~~~~~~~~~~g~-~~-~~~~~~~---~~-aDvvi~~vp~-----~~~ 83 (296)
T 3qha_A 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIR--IEAMTPLAEAGA-TL-ADSVADV---AA-ADLIHITVLD-----DAQ 83 (296)
T ss_dssp CEEEECCSTTHHHHHHHHTTSTTCEEEECSS--TTTSHHHHHTTC-EE-CSSHHHH---TT-SSEEEECCSS-----HHH
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHCCC-EE-cCCHHHH---Hh-CCEEEEECCC-----hHH
Confidence 577889885 3 5777788889999996554 444455555542 11 1121111 13 6888765432 222
Q ss_pred HHHHHHHHHhccCCCcEEEE
Q 012235 398 LDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI 417 (467)
.+.++.++...++||..++-
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~ 103 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAI 103 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 45677888888988876544
No 464
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=30.19 E-value=2.9e+02 Score=24.43 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=41.5
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCc-cEEEccCC-CCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALRGLI-PLYVTLNQ-RLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i-~~~~~d~~-~Lpf~d~sFDlVis~~~L~ 390 (467)
+||=.|+..| .++..|+++|++|++++-+ ....+.....+ + .++.+|.. .+.-.-+..|+|+.+....
T Consensus 23 ~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~--~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 23 RVLVVGANGKVARYLLSELKNKGHEPVAMVRN--EEQGPELRERG-ASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESS--GGGHHHHHHTT-CSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCCeEEEEECC--hHHHHHHHhCC-CceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 7887875433 3555566679999995544 33344444433 5 77888864 2221224689999877653
No 465
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=29.86 E-value=1.1e+02 Score=30.44 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=52.4
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|-=||+|. | .++..|++.|+.|++ .|.++...+.+.+.+.. . ..+...+--.....|+|+..-.- . .
T Consensus 24 kIgiIGlG~mG~~~A~~L~~~G~~V~v--~dr~~~~~~~l~~~g~~-~-~~s~~e~~~~a~~~DvVi~~vp~-~-----~ 93 (358)
T 4e21_A 24 QIGMIGLGRMGADMVRRLRKGGHECVV--YDLNVNAVQALEREGIA-G-ARSIEEFCAKLVKPRVVWLMVPA-A-----V 93 (358)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHTTTCB-C-CSSHHHHHHHSCSSCEEEECSCG-G-----G
T ss_pred EEEEECchHHHHHHHHHHHhCCCEEEE--EeCCHHHHHHHHHCCCE-E-eCCHHHHHhcCCCCCEEEEeCCH-H-----H
Confidence 677888874 3 566777788999998 45666666666655531 1 11111111111234888865443 1 2
Q ss_pred HHHHHHHHHhccCCCcEEE
Q 012235 398 LDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~Li 416 (467)
.+.++.++...|++|..++
T Consensus 94 v~~vl~~l~~~l~~g~iiI 112 (358)
T 4e21_A 94 VDSMLQRMTPLLAANDIVI 112 (358)
T ss_dssp HHHHHHHHGGGCCTTCEEE
T ss_pred HHHHHHHHHhhCCCCCEEE
Confidence 4678888999998876544
No 466
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=29.83 E-value=1.6e+02 Score=29.81 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=25.0
Q ss_pred eEEEECCCccHHHHHHhhC---------CCEEEEEecCCCHHHHHHH
Q 012235 320 IGLDFGVGTGTFAARMREQ---------NVTIVSTALNLGAPFNEMI 357 (467)
Q Consensus 320 ~VLDIGCGtG~~a~~La~~---------g~~V~gvdiDiS~~~l~~a 357 (467)
.|+|+|.|.|.++..+.+. ...++- ++.|+...+.-
T Consensus 83 ~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~i--VE~Sp~Lr~~Q 127 (387)
T 1zkd_A 83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHL--VEINPVLRQKQ 127 (387)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEE--ECCCHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHhCCccccccEEEE--EecCHHHHHHH
Confidence 6899999999998877542 224555 77787655433
No 467
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=29.40 E-value=95 Score=31.97 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=58.1
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCcc------------------EEE-ccCCCCccCCC
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIP------------------LYV-TLNQRLPFFDN 378 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~------------------~~~-~d~~~Lpf~d~ 378 (467)
++-=||.|. | ..+..|++.|++|+++|.|. ..++.+.+.. .+ +.. .+... .-.
T Consensus 10 ~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~--~kv~~l~~g~-~~~~epgl~~~~~~~~~~g~l~~ttd~~e---a~~ 83 (446)
T 4a7p_A 10 RIAMIGTGYVGLVSGACFSDFGHEVVCVDKDA--RKIELLHQNV-MPIYEPGLDALVASNVKAGRLSFTTDLAE---GVK 83 (446)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCS--TTHHHHTTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHH---HHT
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHhcCC-CCccCCCHHHHHHhhcccCCEEEECCHHH---HHh
Confidence 445677774 3 45666777899999966654 3344443321 11 111 11100 012
Q ss_pred ccceEEecc-cc----ccccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHc
Q 012235 379 TMDLIHTTG-FM----DGWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQF 437 (467)
Q Consensus 379 sFDlVis~~-~L----~h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~ 437 (467)
.-|+|+..- .. ..-.+-..++.++..+.+.|++|-.++..+-..+ ...+.+.+.+.+.
T Consensus 84 ~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~p-gtt~~l~~~l~e~ 146 (446)
T 4a7p_A 84 DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPV-GTGDEVERIIAEV 146 (446)
T ss_dssp TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCT-THHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCc-hHHHHHHHHHHHh
Confidence 457777542 11 1112222357888999999999877666442222 2233455555543
No 468
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=29.28 E-value=2.8e+02 Score=24.04 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=49.5
Q ss_pred eEEEECCCccH----HHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc-CCCccceEEeccccccccc
Q 012235 320 IGLDFGVGTGT----FAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF-FDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 320 ~VLDIGCGtG~----~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf-~d~sFDlVis~~~L~h~~~ 394 (467)
+||=.|+ +|. ++..|+++|.+|++++- +........ ...+.++.+|..+... .-+.+|+|+.+.... |..
T Consensus 2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R--~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~-~~~ 76 (224)
T 3h2s_A 2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVR--DPQKAADRL-GATVATLVKEPLVLTEADLDSVDAVVDALSVP-WGS 76 (224)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHT-CTTSEEEECCGGGCCHHHHTTCSEEEECCCCC-TTS
T ss_pred EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEe--ccccccccc-CCCceEEecccccccHhhcccCCEEEECCccC-CCc
Confidence 4666665 444 44555566999998543 443333222 2347788888655431 124589998877652 211
Q ss_pred --hhhHHHHHHHHHhccC-CCcEEEEE
Q 012235 395 --MLLLDFILFDWDRILR-PGGLLWID 418 (467)
Q Consensus 395 --~~~l~~~L~el~RvLK-PGG~LiI~ 418 (467)
...-......+.+.++ .|+.+++.
T Consensus 77 ~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 77 GRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp SCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred chhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 0001233444555544 34666665
No 469
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=29.17 E-value=25 Score=35.39 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCC
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKK 425 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~ 425 (467)
+.++.+|..+.++|+|||++++.+|....+
T Consensus 251 ~~L~~~L~~a~~~L~~gGRl~VISFHSLED 280 (347)
T 3tka_A 251 EEIEQALKSSLNVLAPGGRLSIISFHSLED 280 (347)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecCchhH
Confidence 346788999999999999999999877554
No 470
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=29.13 E-value=52 Score=32.63 Aligned_cols=95 Identities=12% Similarity=-0.008 Sum_probs=47.7
Q ss_pred ceEEEECCCc-cHH-HHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEE--ccCCCCccCCCccceEEeccccccccc
Q 012235 319 RIGLDFGVGT-GTF-AARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYV--TLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 319 r~VLDIGCGt-G~~-a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~--~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
++|+=+|+|. |.. +..+...|.+|+.+| .+...++.+.+.....+.. .+...+.-.-...|+|+.+-.......
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~ 244 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILD--VNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKA 244 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC------
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcccc
Confidence 3889999852 322 233334589998854 4555555554422222211 111111101135899987654421000
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEE
Q 012235 395 MLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+ ..+..+..+.+|+||.++..
T Consensus 245 ~---~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 245 P---KLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp ----CCSCHHHHTTSCTTCEEEEC
T ss_pred c---hhHHHHHHHhhcCCCEEEEE
Confidence 0 11246677888999987653
No 471
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=29.06 E-value=42 Score=33.55 Aligned_cols=94 Identities=17% Similarity=0.074 Sum_probs=47.5
Q ss_pred eEEEECCCc-cHHHHH-HhhCCCEEEEEecCCCHHHHHHHHHc-CC-ccEEEccCCCCccCCCccceEEeccccccccch
Q 012235 320 IGLDFGVGT-GTFAAR-MREQNVTIVSTALNLGAPFNEMIALR-GL-IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDM 395 (467)
Q Consensus 320 ~VLDIGCGt-G~~a~~-La~~g~~V~gvdiDiS~~~l~~a~~r-g~-i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~ 395 (467)
+|+=+|+|. |..+.. +...|..|+++ |.+...++.+.+. +. +.........+.-.-...|+|+..-.......+
T Consensus 170 ~V~ViG~G~iG~~~a~~a~~~Ga~V~~~--d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~ 247 (377)
T 2vhw_A 170 DVVVIGAGTAGYNAARIANGMGATVTVL--DINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAP 247 (377)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEE--eCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCc
Confidence 899999853 332322 33348888885 4555555555542 32 111111111111011357999874322110111
Q ss_pred hhHHHHHHHHHhccCCCcEEEEE
Q 012235 396 LLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
..+..+..+.+||||.++..
T Consensus 248 ---~li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 248 ---KLVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp ---CCBCHHHHTTSCTTCEEEEG
T ss_pred ---ceecHHHHhcCCCCcEEEEE
Confidence 01245667889999987654
No 472
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=28.40 E-value=1.6e+02 Score=27.18 Aligned_cols=84 Identities=13% Similarity=-0.116 Sum_probs=49.3
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEeccccccccchhh
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLDMLL 397 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~~~~ 397 (467)
+|.=||+|. | .++..|++ |++|+.+ |.++...+.+.+.+. .... .... -...|+|+..-.- ...
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~--~~~~~~~~~~~~~g~-~~~~--~~~~---~~~~D~vi~~v~~-----~~~ 68 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RFPTLVW--NRTFEKALRHQEEFG-SEAV--PLER---VAEARVIFTCLPT-----TRE 68 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TSCEEEE--CSSTHHHHHHHHHHC-CEEC--CGGG---GGGCSEEEECCSS-----HHH
T ss_pred eEEEEcccHHHHHHHHHHhC-CCeEEEE--eCCHHHHHHHHHCCC-cccC--HHHH---HhCCCEEEEeCCC-----hHH
Confidence 466789886 4 46777888 9998884 444444555554442 2211 1111 2357888865442 111
Q ss_pred HHHHHHHHHhccCCCcEEEE
Q 012235 398 LDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 398 l~~~L~el~RvLKPGG~LiI 417 (467)
.+.++.++...+++|..++.
T Consensus 69 ~~~v~~~l~~~l~~~~~vv~ 88 (289)
T 2cvz_A 69 VYEVAEALYPYLREGTYWVD 88 (289)
T ss_dssp HHHHHHHHTTTCCTTEEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEE
Confidence 34567788888888776543
No 473
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=28.27 E-value=2.3e+02 Score=27.45 Aligned_cols=89 Identities=13% Similarity=-0.012 Sum_probs=51.6
Q ss_pred ceEEEECCCc--cHHHHHHhhCCCEEEEEecCCCHHHHHHHHH-----------cCCcc-----------EE-EccCCCC
Q 012235 319 RIGLDFGVGT--GTFAARMREQNVTIVSTALNLGAPFNEMIAL-----------RGLIP-----------LY-VTLNQRL 373 (467)
Q Consensus 319 r~VLDIGCGt--G~~a~~La~~g~~V~gvdiDiS~~~l~~a~~-----------rg~i~-----------~~-~~d~~~L 373 (467)
++|-=||+|. +.++..+++.|++|+.+ |.+++.++.+.+ .|.++ +. ..+...
T Consensus 7 ~kI~vIGaG~MG~~iA~~la~~G~~V~l~--d~~~~~~~~~~~~i~~~l~~l~~~G~~~g~~~~~~~~~~i~~~~~~~e- 83 (319)
T 2dpo_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLY--DIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE- 83 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEE--CSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH-
T ss_pred ceEEEEeeCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCccccccchHHHhhceEEeCCHHH-
Confidence 4677889985 46778888889999995 555555554432 23111 11 111111
Q ss_pred ccCCCccceEEeccccccccchhhHHHHHHHHHhccCCCcEEE
Q 012235 374 PFFDNTMDLIHTTGFMDGWLDMLLLDFILFDWDRILRPGGLLW 416 (467)
Q Consensus 374 pf~d~sFDlVis~~~L~h~~~~~~l~~~L~el~RvLKPGG~Li 416 (467)
.-..-|+|+..-.- +......++.++...++|+..++
T Consensus 84 --av~~aDlVieavpe----~~~~k~~v~~~l~~~~~~~~Ii~ 120 (319)
T 2dpo_A 84 --AVEGVVHIQECVPE----NLDLKRKIFAQLDSIVDDRVVLS 120 (319)
T ss_dssp --HTTTEEEEEECCCS----CHHHHHHHHHHHHTTCCSSSEEE
T ss_pred --HHhcCCEEEEeccC----CHHHHHHHHHHHHhhCCCCeEEE
Confidence 12346887754421 11112467888999999887654
No 474
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=27.90 E-value=1.5e+02 Score=27.05 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=41.0
Q ss_pred eEEEECCC--cc---HHHHHHhhCCCEEEEEecCCC-HHHHHHHHHc-CCccEEEccCCCCcc----C------CCccce
Q 012235 320 IGLDFGVG--TG---TFAARMREQNVTIVSTALNLG-APFNEMIALR-GLIPLYVTLNQRLPF----F------DNTMDL 382 (467)
Q Consensus 320 ~VLDIGCG--tG---~~a~~La~~g~~V~gvdiDiS-~~~l~~a~~r-g~i~~~~~d~~~Lpf----~------d~sFDl 382 (467)
++|=.|++ .| .++..|+++|.+|+.++.+.. ...++.+... +.+.++.+|..+..- . -+..|+
T Consensus 10 ~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~ 89 (261)
T 2wyu_A 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDY 89 (261)
T ss_dssp EEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 78888976 33 455566667999998655432 1133333332 335677777655320 0 136899
Q ss_pred EEecccc
Q 012235 383 IHTTGFM 389 (467)
Q Consensus 383 Vis~~~L 389 (467)
++.+...
T Consensus 90 lv~~Ag~ 96 (261)
T 2wyu_A 90 LVHAIAF 96 (261)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9887654
No 475
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=27.86 E-value=3.6e+02 Score=24.86 Aligned_cols=70 Identities=14% Similarity=-0.079 Sum_probs=41.6
Q ss_pred eEEEECCC--cc---HHHHHHhhCCCEEEEEecCCC-HHHHHHHHH-cCCccEEEccCCCCcc----------CCCccce
Q 012235 320 IGLDFGVG--TG---TFAARMREQNVTIVSTALNLG-APFNEMIAL-RGLIPLYVTLNQRLPF----------FDNTMDL 382 (467)
Q Consensus 320 ~VLDIGCG--tG---~~a~~La~~g~~V~gvdiDiS-~~~l~~a~~-rg~i~~~~~d~~~Lpf----------~d~sFDl 382 (467)
++|=.|++ .| .++..|+++|.+|+.++.+.. ...++.+.. .+.+.++.+|..+..- .-+..|+
T Consensus 23 ~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~ 102 (285)
T 2p91_A 23 RALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGSLDI 102 (285)
T ss_dssp EEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSCCCE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 78888875 33 455666777999998655432 113333332 2336677777654320 0146899
Q ss_pred EEecccc
Q 012235 383 IHTTGFM 389 (467)
Q Consensus 383 Vis~~~L 389 (467)
++.+...
T Consensus 103 lv~~Ag~ 109 (285)
T 2p91_A 103 IVHSIAY 109 (285)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9987654
No 476
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=27.52 E-value=2.3e+02 Score=27.64 Aligned_cols=65 Identities=6% Similarity=0.040 Sum_probs=37.6
Q ss_pred eEEEECCCccH---HHHHHhhCCCEEEEEecCCCHHHHHHHHHc-CCccEEEccCCCCccCCCccceEEecc
Q 012235 320 IGLDFGVGTGT---FAARMREQNVTIVSTALNLGAPFNEMIALR-GLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGtG~---~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-g~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+|.=||||... +...+...+++++++ .|.+++..+.++++ +.... ..+.+.+ +.+...|+|+...
T Consensus 28 rvgiiG~G~~~~~~~~~~~~~~~~~lvav-~d~~~~~a~~~a~~~~~~~~-~~~~~~l-l~~~~vD~V~I~t 96 (361)
T 3u3x_A 28 RFAAVGLNHNHIYGQVNCLLRAGARLAGF-HEKDDALAAEFSAVYADARR-IATAEEI-LEDENIGLIVSAA 96 (361)
T ss_dssp EEEEECCCSTTHHHHHHHHHHTTCEEEEE-ECSCHHHHHHHHHHSSSCCE-ESCHHHH-HTCTTCCEEEECC
T ss_pred EEEEECcCHHHHHHHHHHhhcCCcEEEEE-EcCCHHHHHHHHHHcCCCcc-cCCHHHH-hcCCCCCEEEEeC
Confidence 57789999754 233444568888875 46666655555444 32333 3343333 2345689988543
No 477
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=27.40 E-value=1.4e+02 Score=27.43 Aligned_cols=100 Identities=18% Similarity=0.041 Sum_probs=54.9
Q ss_pred eEEEECC-Ccc----HHHHHHhhCCCEEEEEecCCCHHHHHHHHHc--CCccEEEccCCCCc-----cC-----CC---c
Q 012235 320 IGLDFGV-GTG----TFAARMREQNVTIVSTALNLGAPFNEMIALR--GLIPLYVTLNQRLP-----FF-----DN---T 379 (467)
Q Consensus 320 ~VLDIGC-GtG----~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r--g~i~~~~~d~~~Lp-----f~-----d~---s 379 (467)
++|=.|+ |+| .++..|+++|.+|+.++.+... .++.+.+. ..+.++..|..+.. +. -+ .
T Consensus 9 ~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~~~ 87 (269)
T 2h7i_A 9 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR-LIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNK 87 (269)
T ss_dssp EEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH-HHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTTCC
T ss_pred EEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH-HHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCCCC
Confidence 7888898 244 3555566679999986654322 22333222 23567777765432 00 02 7
Q ss_pred cceEEecccccc--------c--cchhhHH-----------HHHHHHHhccCCCcEEEEEec
Q 012235 380 MDLIHTTGFMDG--------W--LDMLLLD-----------FILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 380 FDlVis~~~L~h--------~--~~~~~l~-----------~~L~el~RvLKPGG~LiI~~~ 420 (467)
+|+++.+..... + .+.+.++ .+.+.+.+.++++|.++....
T Consensus 88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss 149 (269)
T 2h7i_A 88 LDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDF 149 (269)
T ss_dssp EEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcC
Confidence 899998765422 0 1111121 234455666677788877543
No 478
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=27.39 E-value=28 Score=34.57 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=48.4
Q ss_pred ceEEEECCCc-cHHHHH-HhhCCCEEEEEecCCCHHHHHHHHHcCC--ccEEEccCCCCccCCCccceEEeccccccccc
Q 012235 319 RIGLDFGVGT-GTFAAR-MREQNVTIVSTALNLGAPFNEMIALRGL--IPLYVTLNQRLPFFDNTMDLIHTTGFMDGWLD 394 (467)
Q Consensus 319 r~VLDIGCGt-G~~a~~-La~~g~~V~gvdiDiS~~~l~~a~~rg~--i~~~~~d~~~Lpf~d~sFDlVis~~~L~h~~~ 394 (467)
.+|+=+|+|. |..+.. +...|..|+. .|.++..++.+.+.+. +.....+...+.-.-..+|+|+..-.......
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v--~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~ 245 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQI--FDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 245 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEE--EESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEE--EeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence 3899999863 333333 3345888888 4555555555554332 21222111111101135899987554311111
Q ss_pred hhhHHHHHHHHHhccCCCcEEEEE
Q 012235 395 MLLLDFILFDWDRILRPGGLLWID 418 (467)
Q Consensus 395 ~~~l~~~L~el~RvLKPGG~LiI~ 418 (467)
+ ..+..+..+.++|||.++..
T Consensus 246 ~---~li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 246 P---ILVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp C---CCBCHHHHTTSCTTCEEEET
T ss_pred C---eecCHHHHhhCCCCCEEEEE
Confidence 1 01234566789999987653
No 479
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=26.49 E-value=2.2e+02 Score=23.72 Aligned_cols=89 Identities=12% Similarity=-0.049 Sum_probs=47.8
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHH-HcCCccEEEccCCCCc----cCCCccceEEeccccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIA-LRGLIPLYVTLNQRLP----FFDNTMDLIHTTGFMDGW 392 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~-~rg~i~~~~~d~~~Lp----f~d~sFDlVis~~~L~h~ 392 (467)
+|+=+|+|. | .++..|.+.|..|+.++.+ +...+.+. ..+ ..++.++..... ..-..+|+|+....-
T Consensus 21 ~v~IiG~G~iG~~la~~L~~~g~~V~vid~~--~~~~~~~~~~~g-~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~--- 94 (155)
T 2g1u_A 21 YIVIFGCGRLGSLIANLASSSGHSVVVVDKN--EYAFHRLNSEFS-GFTVVGDAAEFETLKECGMEKADMVFAFTND--- 94 (155)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC--GGGGGGSCTTCC-SEEEESCTTSHHHHHTTTGGGCSEEEECSSC---
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEECC--HHHHHHHHhcCC-CcEEEecCCCHHHHHHcCcccCCEEEEEeCC---
Confidence 789999864 3 3445555668999986554 33333333 223 345556543311 112458888876432
Q ss_pred cchhhHHHHHHHHHhccCCCcEEEE
Q 012235 393 LDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 393 ~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+. ....+.++.+.+.+...++.
T Consensus 95 --~~-~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 95 --DS-TNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp --HH-HHHHHHHHHHHTSCCSEEEE
T ss_pred --cH-HHHHHHHHHHHHCCCCeEEE
Confidence 11 12344555555566555554
No 480
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=25.87 E-value=1.5e+02 Score=27.00 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=38.7
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHH----HHHcC-CccEEEccCCCCcc----CC------Cccc
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEM----IALRG-LIPLYVTLNQRLPF----FD------NTMD 381 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~----a~~rg-~i~~~~~d~~~Lpf----~d------~sFD 381 (467)
+||=.|++.| .++..|+++|.+|+.++-. +....+. +...+ .+.++.+|..+... .. +.+|
T Consensus 23 ~vlItGasggiG~~la~~l~~~G~~v~~~~r~-~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 101 (274)
T 1ja9_A 23 VALTTGAGRGIGRGIAIELGRRGASVVVNYGS-SSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLD 101 (274)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESS-CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCEE
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC-chHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 7887776544 3555666779998885442 3332222 22223 35667777654321 01 3689
Q ss_pred eEEecccc
Q 012235 382 LIHTTGFM 389 (467)
Q Consensus 382 lVis~~~L 389 (467)
+|+.+...
T Consensus 102 ~vi~~Ag~ 109 (274)
T 1ja9_A 102 FVMSNSGM 109 (274)
T ss_dssp EEECCCCC
T ss_pred EEEECCCC
Confidence 98876654
No 481
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=25.74 E-value=1.7e+02 Score=26.68 Aligned_cols=68 Identities=10% Similarity=-0.096 Sum_probs=40.9
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHc-C-CccEEEccCCCCcc----C------CCccceEE
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALR-G-LIPLYVTLNQRLPF----F------DNTMDLIH 384 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~r-g-~i~~~~~d~~~Lpf----~------d~sFDlVi 384 (467)
++|=.|++.| .++..|+++|.+|+.++. +.+..+...+. + .+.++..|..+..- . -+..|+++
T Consensus 7 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv 84 (254)
T 1hdc_A 7 TVIITGGARGLGAEAARQAVAAGARVVLADV--LDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLV 84 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 7888887766 466677778999998544 34434333322 2 24566666554320 0 13689998
Q ss_pred ecccc
Q 012235 385 TTGFM 389 (467)
Q Consensus 385 s~~~L 389 (467)
.+...
T Consensus 85 ~nAg~ 89 (254)
T 1hdc_A 85 NNAGI 89 (254)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 87654
No 482
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=25.67 E-value=1.2e+02 Score=28.39 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=45.5
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcC-CccEEEccCCCCcc----------CCCccceEE
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIALRG-LIPLYVTLNQRLPF----------FDNTMDLIH 384 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg-~i~~~~~d~~~Lpf----------~d~sFDlVi 384 (467)
++||=-|++.| ..+..|++.|..|+.++. +++..+.+.+.+ .+..+.+|..+..- .-+..|+++
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~--~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLV 80 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDI--DEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV 80 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 47888898888 577888888999998554 455555554443 35566777654320 115789988
Q ss_pred ecccc
Q 012235 385 TTGFM 389 (467)
Q Consensus 385 s~~~L 389 (467)
.+...
T Consensus 81 NNAG~ 85 (247)
T 3ged_A 81 NNACR 85 (247)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 77543
No 483
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=25.66 E-value=1.6e+02 Score=30.71 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=50.4
Q ss_pred CCCCCceEEEECCCc-cHH-HHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccccc
Q 012235 314 KPGETRIGLDFGVGT-GTF-AARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFMDG 391 (467)
Q Consensus 314 ~~g~~r~VLDIGCGt-G~~-a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L~h 391 (467)
..+. +|+=+|+|. |.. +..+...|.+|+++ |.++...+.+.+.|. .+ .+...+ -...|+|+..-.-.+
T Consensus 272 l~Gk--tV~IiG~G~IG~~~A~~lka~Ga~Viv~--d~~~~~~~~A~~~Ga-~~--~~l~e~---l~~aDvVi~atgt~~ 341 (494)
T 3ce6_A 272 IGGK--KVLICGYGDVGKGCAEAMKGQGARVSVT--EIDPINALQAMMEGF-DV--VTVEEA---IGDADIVVTATGNKD 341 (494)
T ss_dssp CTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHTTC-EE--CCHHHH---GGGCSEEEECSSSSC
T ss_pred CCcC--EEEEEccCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCC-EE--ecHHHH---HhCCCEEEECCCCHH
Confidence 4455 899999864 332 23333448899884 455555555665553 21 122111 246799987643222
Q ss_pred ccchhhHHHHHHHHHhccCCCcEEEEEec
Q 012235 392 WLDMLLLDFILFDWDRILRPGGLLWIDRF 420 (467)
Q Consensus 392 ~~~~~~l~~~L~el~RvLKPGG~LiI~~~ 420 (467)
... .+..+.+|+||+++....
T Consensus 342 ~i~--------~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 342 IIM--------LEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp SBC--------HHHHHHSCTTCEEEECSS
T ss_pred HHH--------HHHHHhcCCCcEEEEeCC
Confidence 222 245667899999877543
No 484
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=25.39 E-value=2.8e+02 Score=26.44 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=53.9
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEcc---------CCCCccCCCccceEEeccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTL---------NQRLPFFDNTMDLIHTTGF 388 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d---------~~~Lpf~d~sFDlVis~~~ 388 (467)
+|.=||+|. | .++..|++.|.+|+.+ ..++..+.+.+.+. .....+ ..+.. ....+|+|+..--
T Consensus 21 kI~IiGaGa~G~~~a~~L~~~G~~V~l~---~~~~~~~~i~~~g~-~~~~~~~~~~~~~~~~~~~~-~~~~~D~vilavk 95 (318)
T 3hwr_A 21 KVAIMGAGAVGCYYGGMLARAGHEVILI---ARPQHVQAIEATGL-RLETQSFDEQVKVSASSDPS-AVQGADLVLFCVK 95 (318)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEEE---CCHHHHHHHHHHCE-EEECSSCEEEECCEEESCGG-GGTTCSEEEECCC
T ss_pred cEEEECcCHHHHHHHHHHHHCCCeEEEE---EcHhHHHHHHhCCe-EEEcCCCcEEEeeeeeCCHH-HcCCCCEEEEEcc
Confidence 688899985 3 6777888889999885 44556666666552 111000 01111 1246898886543
Q ss_pred cccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 389 MDGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 389 L~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
- + .++.++.++...++|+..++.
T Consensus 96 ~-~-----~~~~~l~~l~~~l~~~~~iv~ 118 (318)
T 3hwr_A 96 S-T-----DTQSAALAMKPALAKSALVLS 118 (318)
T ss_dssp G-G-----GHHHHHHHHTTTSCTTCEEEE
T ss_pred c-c-----cHHHHHHHHHHhcCCCCEEEE
Confidence 3 1 246788999999998876554
No 485
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=25.36 E-value=78 Score=20.08 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012235 66 RALSDRVGEVLNRMESLQDKLEKTVQQLEK 95 (467)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (467)
.++...+..|=.++|+|.+-|| +|||
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le----~~~~ 27 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLE----KIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----hhhc
Confidence 4566777788888999998888 7775
No 486
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=25.26 E-value=61 Score=33.42 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=41.7
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCcc----CCCccceEEe
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPF----FDNTMDLIHT 385 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf----~d~sFDlVis 385 (467)
+|+=+|||. | .++..|.+.|+.|+. +|..+..++.+..+-.+..+++|+.+... .-...|++++
T Consensus 5 ~iiI~G~G~vG~~la~~L~~~~~~v~v--Id~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 5 KIIILGAGQVGGTLAENLVGENNDITI--VDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp EEEEECCSHHHHHHHHHTCSTTEEEEE--EESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEE--EECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 577777774 3 334444456889998 55667777777665446788888766431 2356788776
No 487
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=25.12 E-value=3.8e+02 Score=25.56 Aligned_cols=106 Identities=8% Similarity=-0.068 Sum_probs=58.5
Q ss_pred eEEEECCCc-c-HHHHHHhhCC-CEEEEEecCCC-----HHHHHHHHHcCCccEEEc-cCCCCccCCCccceEEeccccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQN-VTIVSTALNLG-----APFNEMIALRGLIPLYVT-LNQRLPFFDNTMDLIHTTGFMD 390 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g-~~V~gvdiDiS-----~~~l~~a~~rg~i~~~~~-d~~~Lpf~d~sFDlVis~~~L~ 390 (467)
+|-=||+|. | .++..|++.| +.|++++.+.. ....+.+.+.+. .. +.... -..-|+|+..-..
T Consensus 26 ~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~----~~~s~~e~---~~~aDvVi~avp~- 97 (317)
T 4ezb_A 26 TIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV----EPLDDVAG---IACADVVLSLVVG- 97 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC----EEESSGGG---GGGCSEEEECCCG-
T ss_pred eEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC----CCCCHHHH---HhcCCEEEEecCC-
Confidence 677889884 3 5667777789 99999766531 133444444453 22 22221 2346888865433
Q ss_pred cccchhhHHHHHHHHHhccCCCcEEEEEecccCCCCHHHHHHHHHHcCc
Q 012235 391 GWLDMLLLDFILFDWDRILRPGGLLWIDRFFCNKKDLDDYMYMFLQFRY 439 (467)
Q Consensus 391 h~~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~~~~~~~~~~~i~~~Gf 439 (467)
.. ....+.++...|+||..++-.. .........+.+.+...|.
T Consensus 98 ----~~-~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~g~ 140 (317)
T 4ezb_A 98 ----AA-TKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATGKG 140 (317)
T ss_dssp ----GG-HHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTSSC
T ss_pred ----HH-HHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHcCC
Confidence 11 2345688888898887644322 2222222245555555444
No 488
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=24.83 E-value=2.1e+02 Score=26.27 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=40.5
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHH----HH--cCCccEEEccCCCC----cc----C------
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMI----AL--RGLIPLYVTLNQRL----PF----F------ 376 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a----~~--rg~i~~~~~d~~~L----pf----~------ 376 (467)
++|=.|++.| .++..|+++|.+|+.++.. +....+.+ .. .+.+.++.+|..+. .. .
T Consensus 13 ~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 91 (276)
T 1mxh_A 13 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRH-SEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 91 (276)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS-CHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC-ChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHHHh
Confidence 6787777665 4556667779999986541 33332222 22 22366777776654 20 0
Q ss_pred CCccceEEecccc
Q 012235 377 DNTMDLIHTTGFM 389 (467)
Q Consensus 377 d~sFDlVis~~~L 389 (467)
-+..|+++.+...
T Consensus 92 ~g~id~lv~nAg~ 104 (276)
T 1mxh_A 92 FGRCDVLVNNASA 104 (276)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1368999987654
No 489
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=24.54 E-value=1.5e+02 Score=26.72 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=54.1
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHH---HHHcC-CccEEEccCCCCcc----------------C
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEM---IALRG-LIPLYVTLNQRLPF----------------F 376 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~---a~~rg-~i~~~~~d~~~Lpf----------------~ 376 (467)
++|=.|++.| .++..|+++|..|+.++-.......+. +...+ .+.++..|..+..- .
T Consensus 9 ~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 88 (255)
T 3icc_A 9 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTG 88 (255)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhccccc
Confidence 7888888776 466777778998877433333332222 22223 25566666554320 0
Q ss_pred CCccceEEecccccccc-----chhhHH-----------HHHHHHHhccCCCcEEEEEe
Q 012235 377 DNTMDLIHTTGFMDGWL-----DMLLLD-----------FILFDWDRILRPGGLLWIDR 419 (467)
Q Consensus 377 d~sFDlVis~~~L~h~~-----~~~~l~-----------~~L~el~RvLKPGG~LiI~~ 419 (467)
.+..|+++.+....... +.+.++ .+.+.+...++++|.++...
T Consensus 89 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~is 147 (255)
T 3icc_A 89 STKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS 147 (255)
T ss_dssp SSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeC
Confidence 13489999876542211 111111 23344555566788877754
No 490
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=24.51 E-value=1.2e+02 Score=27.86 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=39.4
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHHH-----c---CCccEEEccCCCCcc----C------CC
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIAL-----R---GLIPLYVTLNQRLPF----F------DN 378 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~~-----r---g~i~~~~~d~~~Lpf----~------d~ 378 (467)
++|=.|++.| .++..|+++|.+|+.++-+ ...++.+.+ . ..+.++.+|..+..- . -+
T Consensus 8 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (278)
T 1spx_A 8 VAIITGSSNGIGRATAVLFAREGAKVTITGRH--AERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG 85 (278)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHcC
Confidence 6787787665 4566677789999985543 333332221 1 125566777654320 0 13
Q ss_pred ccceEEecccc
Q 012235 379 TMDLIHTTGFM 389 (467)
Q Consensus 379 sFDlVis~~~L 389 (467)
..|+++.+...
T Consensus 86 ~id~lv~~Ag~ 96 (278)
T 1spx_A 86 KLDILVNNAGA 96 (278)
T ss_dssp CCCEEEECCC-
T ss_pred CCCEEEECCCC
Confidence 68998887654
No 491
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.23 E-value=1.1e+02 Score=21.63 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012235 64 DIRALSDRVGEVLNRMESLQDKLEKTVQQLEK 95 (467)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (467)
++..|.-+.--+|.+.+++|.||..++-++|+
T Consensus 13 ~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777788887777777774
No 492
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=23.44 E-value=33 Score=33.43 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEecccCCC
Q 012235 396 LLLDFILFDWDRILRPGGLLWIDRFFCNKK 425 (467)
Q Consensus 396 ~~l~~~L~el~RvLKPGG~LiI~~~~~~~~ 425 (467)
..++..|..+.++|+|||.+.+.+|....+
T Consensus 222 ~~l~~~l~~~~~~l~~ggr~~visfhsled 251 (301)
T 1m6y_A 222 ENLKEFLKKAEDLLNPGGRIVVISFHSLED 251 (301)
T ss_dssp HHHHHHHHHGGGGEEEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEecCcHHH
Confidence 346789999999999999999999876553
No 493
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=23.40 E-value=3.1e+02 Score=28.17 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=54.4
Q ss_pred eEEEECCCc-c-HHHHHHhhCCCEEEEEecCCCHHHHHHHHHcCCccEEEccC----------CCCccC------CCccc
Q 012235 320 IGLDFGVGT-G-TFAARMREQNVTIVSTALNLGAPFNEMIALRGLIPLYVTLN----------QRLPFF------DNTMD 381 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~----------~~Lpf~------d~sFD 381 (467)
+|.=||+|. | .++..|++.|++|++ .|.++..++.+.+.+. +++.... .++.+. -...|
T Consensus 10 ~I~VIG~G~vG~~lA~~la~~G~~V~~--~d~~~~~v~~l~~~~~-~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD 86 (478)
T 2y0c_A 10 NLTIIGSGSVGLVTGACLADIGHDVFC--LDVDQAKIDILNNGGV-PIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD 86 (478)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEE--ECSCHHHHHHHHTTCC-SSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred eEEEECcCHHHHHHHHHHHhCCCEEEE--EECCHHHHHHHHCCCC-CcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence 677889985 4 567788888999999 5555666666665431 1111000 011110 12457
Q ss_pred eEEecccc----ccccchhhHHHHHHHHHhccCCCcEEEE
Q 012235 382 LIHTTGFM----DGWLDMLLLDFILFDWDRILRPGGLLWI 417 (467)
Q Consensus 382 lVis~~~L----~h~~~~~~l~~~L~el~RvLKPGG~LiI 417 (467)
+|+..-.- ..-.+...++.++.++...|+||..++.
T Consensus 87 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~ 126 (478)
T 2y0c_A 87 VQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD 126 (478)
T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred EEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE
Confidence 77654221 0111223457888899999999776544
No 494
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=23.40 E-value=4.4e+02 Score=27.21 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=55.8
Q ss_pred eEEEECCCcc--HHHHHHhhC-CC-EEEEEecCCCH--HHHHHHHHc---------------------CCccEEEccCCC
Q 012235 320 IGLDFGVGTG--TFAARMREQ-NV-TIVSTALNLGA--PFNEMIALR---------------------GLIPLYVTLNQR 372 (467)
Q Consensus 320 ~VLDIGCGtG--~~a~~La~~-g~-~V~gvdiDiS~--~~l~~a~~r---------------------g~i~~~~~d~~~ 372 (467)
+|-=||.|.= ..+..|++. |+ +|+++|.+..+ ..++.+.+. +.+.+ ..+.+.
T Consensus 20 kIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~-ttd~ea 98 (478)
T 3g79_A 20 KIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC-TPDFSR 98 (478)
T ss_dssp EEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE-ESCGGG
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE-eCcHHH
Confidence 6778898863 567788899 99 99997766440 033333221 11111 112111
Q ss_pred CccCCCccceEEeccccccc-------cchhhHHHHHHHHHhccCCCcEEEEEecccC
Q 012235 373 LPFFDNTMDLIHTTGFMDGW-------LDMLLLDFILFDWDRILRPGGLLWIDRFFCN 423 (467)
Q Consensus 373 Lpf~d~sFDlVis~~~L~h~-------~~~~~l~~~L~el~RvLKPGG~LiI~~~~~~ 423 (467)
-...|+|+..-.- .. .+-..+......+...|+||-.++..+-..+
T Consensus 99 ----~~~aDvViiaVpt-p~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~p 151 (478)
T 3g79_A 99 ----ISELDAVTLAIQT-PFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITP 151 (478)
T ss_dssp ----GGGCSEEEECCCC-CCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCT
T ss_pred ----HhcCCEEEEecCC-chhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCCh
Confidence 2346887764322 21 2333356778899999999887665443333
No 495
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=23.19 E-value=1.7e+02 Score=28.48 Aligned_cols=65 Identities=6% Similarity=-0.169 Sum_probs=36.5
Q ss_pred eEEEECCCc-cH--HHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecc
Q 012235 320 IGLDFGVGT-GT--FAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGt-G~--~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+|.=||||. |. ++..+.+. ++.++++ .|.+....+.++++..++.+ .+.+.+ +.+...|+|+...
T Consensus 29 rigiIG~G~~g~~~~~~~l~~~~~~~l~av-~d~~~~~~~~~a~~~g~~~~-~~~~~l-l~~~~~D~V~i~t 97 (350)
T 3rc1_A 29 RVGVIGCADIAWRRALPALEAEPLTEVTAI-ASRRWDRAKRFTERFGGEPV-EGYPAL-LERDDVDAVYVPL 97 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCTTEEEEEE-EESSHHHHHHHHHHHCSEEE-ESHHHH-HTCTTCSEEEECC
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCeEEEEE-EcCCHHHHHHHHHHcCCCCc-CCHHHH-hcCCCCCEEEECC
Confidence 577899984 43 44555555 6777764 45555555544443224444 444433 2245689888643
No 496
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=22.83 E-value=2.7e+02 Score=25.92 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=31.6
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHH----H-HcC-CccEEEccCCCC
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMI----A-LRG-LIPLYVTLNQRL 373 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a----~-~rg-~i~~~~~d~~~L 373 (467)
++|=.|++.| .++..|+++|..|+.++. .+...++.+ . ..+ .+.++..|..+.
T Consensus 11 ~~lVTGas~GIG~aia~~la~~G~~V~~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~ 72 (291)
T 1e7w_A 11 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYH-RSAAEANALSATLNARRPNSAITVQADLSNV 72 (291)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEES-SCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEcC-CCHHHHHHHHHHHhhhcCCeeEEEEeecCCc
Confidence 7787787766 466667778999988550 333333222 1 223 366777776554
No 497
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=22.68 E-value=1.7e+02 Score=26.78 Aligned_cols=68 Identities=13% Similarity=0.036 Sum_probs=42.7
Q ss_pred eEEEECCCcc---HHHHHHhhCCCEEEEEecCCCHHHHHHHH----Hc----CCccEEEccCCCCcc----------CCC
Q 012235 320 IGLDFGVGTG---TFAARMREQNVTIVSTALNLGAPFNEMIA----LR----GLIPLYVTLNQRLPF----------FDN 378 (467)
Q Consensus 320 ~VLDIGCGtG---~~a~~La~~g~~V~gvdiDiS~~~l~~a~----~r----g~i~~~~~d~~~Lpf----------~d~ 378 (467)
++|=.|++.| .++..|+++|.+|+.++. +...++.+. .. ..+.++..|..+..- .-+
T Consensus 9 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (250)
T 3nyw_A 9 LAIITGASQGIGAVIAAGLATDGYRVVLIAR--SKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYG 86 (250)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHTCEEEEEES--CHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhcC
Confidence 7888888876 566777778999988544 443333322 22 335677777665320 014
Q ss_pred ccceEEecccc
Q 012235 379 TMDLIHTTGFM 389 (467)
Q Consensus 379 sFDlVis~~~L 389 (467)
..|+++.+...
T Consensus 87 ~iD~lvnnAg~ 97 (250)
T 3nyw_A 87 AVDILVNAAAM 97 (250)
T ss_dssp CEEEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 68999987655
No 498
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=22.46 E-value=1.7e+02 Score=28.00 Aligned_cols=64 Identities=16% Similarity=0.028 Sum_probs=36.1
Q ss_pred eEEEECCCc-c-HHHHHHhhC-CCEEEEEecCCCHHHHHHHHHcCCccEEEccCCCCccCCCccceEEecc
Q 012235 320 IGLDFGVGT-G-TFAARMREQ-NVTIVSTALNLGAPFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTG 387 (467)
Q Consensus 320 ~VLDIGCGt-G-~~a~~La~~-g~~V~gvdiDiS~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~ 387 (467)
+|.=||||. | .++..+.+. ++.++++ .|.++...+.++++..++ ..+.+.+ +.+...|+|+..-
T Consensus 5 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av-~d~~~~~~~~~~~~~~~~--~~~~~~~-l~~~~~D~V~i~t 71 (331)
T 4hkt_A 5 RFGLLGAGRIGKVHAKAVSGNADARLVAV-ADAFPAAAEAIAGAYGCE--VRTIDAI-EAAADIDAVVICT 71 (331)
T ss_dssp EEEEECCSHHHHHHHHHHHHCTTEEEEEE-ECSSHHHHHHHHHHTTCE--ECCHHHH-HHCTTCCEEEECS
T ss_pred EEEEECCCHHHHHHHHHHhhCCCcEEEEE-ECCCHHHHHHHHHHhCCC--cCCHHHH-hcCCCCCEEEEeC
Confidence 566789975 3 344445554 6777764 566666555555544344 3343333 2234689888654
No 499
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=22.45 E-value=1.7e+02 Score=27.01 Aligned_cols=100 Identities=14% Similarity=0.033 Sum_probs=55.9
Q ss_pred ceEEEECCCcc---HHHHHHhhCCCEEEEEecC-CCHHHHHHH----HHcC-CccEEEccCCCCcc----C------CCc
Q 012235 319 RIGLDFGVGTG---TFAARMREQNVTIVSTALN-LGAPFNEMI----ALRG-LIPLYVTLNQRLPF----F------DNT 379 (467)
Q Consensus 319 r~VLDIGCGtG---~~a~~La~~g~~V~gvdiD-iS~~~l~~a----~~rg-~i~~~~~d~~~Lpf----~------d~s 379 (467)
+++|=.|++.| .++..|+++|..|+.++.. .+...++.+ ...+ .+.++..|..+..- . -+.
T Consensus 12 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 91 (262)
T 3ksu_A 12 KVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGK 91 (262)
T ss_dssp CEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 37888888877 4667777889998875432 222223222 2223 25667777654320 0 146
Q ss_pred cceEEecccccccc-----chhhHH-----------HHHHHHHhccCCCcEEEEE
Q 012235 380 MDLIHTTGFMDGWL-----DMLLLD-----------FILFDWDRILRPGGLLWID 418 (467)
Q Consensus 380 FDlVis~~~L~h~~-----~~~~l~-----------~~L~el~RvLKPGG~LiI~ 418 (467)
.|+++.+....... +.+.++ .+.+.+.+.++++|.++..
T Consensus 92 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 92 VDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp EEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 89998876542211 111111 2344556666778887775
No 500
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=22.28 E-value=2.3e+02 Score=28.61 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=41.8
Q ss_pred eEEEECCCccH--HHHHHhhCCCEEEEEecCCC--HHHHHHHHHcCCccEEEccCCCCccCCCccceEEecccc
Q 012235 320 IGLDFGVGTGT--FAARMREQNVTIVSTALNLG--APFNEMIALRGLIPLYVTLNQRLPFFDNTMDLIHTTGFM 389 (467)
Q Consensus 320 ~VLDIGCGtG~--~a~~La~~g~~V~gvdiDiS--~~~l~~a~~rg~i~~~~~d~~~Lpf~d~sFDlVis~~~L 389 (467)
+|+=||-|... .+..|.++|+.|+++|.... .+..+...+.| +++..+.... ...++.+|+|+.+..+
T Consensus 11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~g-i~~~~g~~~~-~~~~~~~d~vv~spgi 82 (451)
T 3lk7_A 11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEG-IKVVCGSHPL-ELLDEDFCYMIKNPGI 82 (451)
T ss_dssp EEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTT-CEEEESCCCG-GGGGSCEEEEEECTTS
T ss_pred EEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCC-CEEEECCChH-HhhcCCCCEEEECCcC
Confidence 77888876543 35556778999999877542 24455555555 5666554221 1112338999987666
Done!