BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012236
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 141/473 (29%), Positives = 239/473 (50%), Gaps = 61/473 (12%)
Query: 27 VKFLPGFQGPLSFELETGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFS 86
++ LPG SF +GY+ S+ L Y+FV+S+K+P+ P++LWL GGPGCS+
Sbjct: 7 IQRLPGLAKQPSFRQYSGYLKSSGSK--HLHYWFVESQKDPENSPVVLWLNGGPGCSSLD 64
Query: 87 ALVYEIGPINFNILEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGFSYVRTPLASQTGD 146
L+ E GP +++ +G TL NPYSW A++L+++SP G GFSY + T D
Sbjct: 65 GLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYA-TND 118
Query: 147 FKQVHQVDQFLRKWLMDHPEFLSNPFYVGGDSYSGITVPPLVQQISNENEEGIKPLINLQ 206
+ + L+ + PE+ +N ++ G+SY+GI +P L + + P +NLQ
Sbjct: 119 TEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------PSMNLQ 172
Query: 207 GYILGNPKTDKIVDKNSQIPFAHGMGLISNELYESLKI-TCGGDYANI-DPSNVDCLNDN 264
G +GN + + NS + FA+ GL+ N L+ SL+ C + N D +++C+ +
Sbjct: 173 GLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNL 232
Query: 265 QAFSELI--SGLDQNHILEPRCP---------------------FFSPKPRDSNGKRRSL 301
Q + ++ SGL+ ++ P C F+ P + L
Sbjct: 233 QEVARIVGNSGLNIYNLYAP-CAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALL 291
Query: 302 NDNEKSQEFLDPEPALPSIGCRSFGYMLSQNWENDYNVRKALQIRQGSKGKWQRCNY--D 359
+K + +DP P + ++ N+ VRKAL I + +W CN+ +
Sbjct: 292 RSGDKVR--MDP-PCTNTTAASTY--------LNNPYVRKALNIPE-QLPQWDMCNFLVN 339
Query: 360 LPYTQEIGSSFSFHVS-LSTKGYRSLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDWRPWI 418
L Y + S S ++ LS++ Y+ L+Y+GD DM F+G E ++ SLN + RPW+
Sbjct: 340 LQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWL 399
Query: 419 LH-----SQVAGYTRTYSNRMTYATVKGGGHIAPEYRPAECYAMFQRWINHDP 466
+ Q+AG+ + +S+ + + T+KG GH+ P +P + MF R++N P
Sbjct: 400 VKYGDSGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 144/263 (54%), Gaps = 18/263 (6%)
Query: 24 RSTVKFLPGFQGPLSFELETGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCS 83
+ ++ LPG SF +GY+ S+ L Y+FV+S+K+P+ P++LWL GGPGCS
Sbjct: 6 QDEIQRLPGLAKQPSFRQYSGYLKGSGSK--HLHYWFVESQKDPENSPVVLWLNGGPGCS 63
Query: 84 AFSALVYEIGPINFNILEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGFSYVRTPLASQ 143
+ L+ E GP +++ +G TL NPYSW A++L+++SP G GFSY +
Sbjct: 64 SLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYA- 117
Query: 144 TGDFKQVHQVDQFLRKWLMDHPEFLSNPFYVGGDSYSGITVPPLVQQISNENEEGIKPLI 203
T D + + L+ + PE+ +N ++ G+SY+GI +P L + + P +
Sbjct: 118 TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------PSM 171
Query: 204 NLQGYILGNPKTDKIVDKNSQIPFAHGMGLISNELYESLKI-TCGGDYANI-DPSNVDCL 261
NLQG +GN + + NS + FA+ GL+ N L+ SL+ C + N D +++C+
Sbjct: 172 NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECV 231
Query: 262 NDNQAFSELI--SGLDQNHILEP 282
+ Q + ++ SGL+ ++ P
Sbjct: 232 TNLQEVARIVGNSGLNIYNLYAP 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 122/259 (47%), Gaps = 12/259 (4%)
Query: 27 VKFLPGFQGPLSFELETGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 87 ALVYEIGPINFNILEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGFSYVRTPLASQT-G 145
E + L LN Y W K A++LF+DSP G GFSY T T G
Sbjct: 70 YGASE----ELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSG 125
Query: 146 DFKQVHQVDQFLRKWLMDHPEFLSNPFYVGGDSYSGITVPPLVQQISNENEEGIKPLINL 205
D + H FL KW P + FY+ G+SY+G VP L Q + P+INL
Sbjct: 126 DNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVINL 181
Query: 206 QGYILGNPKTDKIVDKNSQIPFAHGMGLISNELYESLKITCGGDYANIDPSNVDCLNDNQ 265
+G+++GN D D F G++S++ Y LK C D + I PS C
Sbjct: 182 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHD-SFIHPSPA-CDAATD 239
Query: 266 AFSELISGLDQNHILEPRC 284
+ +D + P C
Sbjct: 240 VATAEQGNIDMYSLYTPVC 258
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 121/259 (46%), Gaps = 12/259 (4%)
Query: 27 VKFLPGFQGPLSFELETGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 87 ALVYEIGPINFNILEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGFSYVRTPLASQT-G 145
E L LN Y W K A++LF+DSP G GFSY T T G
Sbjct: 70 YGASE----ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSG 125
Query: 146 DFKQVHQVDQFLRKWLMDHPEFLSNPFYVGGDSYSGITVPPLVQQISNENEEGIKPLINL 205
D + H FL KW P + FY+ G+SY+G VP L Q + P+INL
Sbjct: 126 DNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVINL 181
Query: 206 QGYILGNPKTDKIVDKNSQIPFAHGMGLISNELYESLKITCGGDYANIDPSNVDCLNDNQ 265
+G+++GN D D F G++S++ Y LK C D + I PS C
Sbjct: 182 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHD-SFIHPSPA-CDAATD 239
Query: 266 AFSELISGLDQNHILEPRC 284
+ +D + P C
Sbjct: 240 VATAEQGNIDMYSLYTPVC 258
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 121/259 (46%), Gaps = 12/259 (4%)
Query: 27 VKFLPGFQGPLSFELETGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 7 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 65
Query: 87 ALVYEIGPINFNILEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGFSYVRTPLASQT-G 145
E L LN Y W K A++LF+DSP G GFSY T T G
Sbjct: 66 YGASE----ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSG 121
Query: 146 DFKQVHQVDQFLRKWLMDHPEFLSNPFYVGGDSYSGITVPPLVQQISNENEEGIKPLINL 205
D + H FL KW P + FY+ G+SY+G VP L Q + P+INL
Sbjct: 122 DNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVINL 177
Query: 206 QGYILGNPKTDKIVDKNSQIPFAHGMGLISNELYESLKITCGGDYANIDPSNVDCLNDNQ 265
+G+++GN D D F G++S++ Y LK C D + I PS C
Sbjct: 178 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHD-SFIHPSPA-CDAATD 235
Query: 266 AFSELISGLDQNHILEPRC 284
+ +D + P C
Sbjct: 236 VATAEQGNIDMYSLYTPVC 254
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 121/259 (46%), Gaps = 12/259 (4%)
Query: 27 VKFLPGFQGPLSFELETGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 6 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 64
Query: 87 ALVYEIGPINFNILEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGFSYVRTPLASQT-G 145
E L LN Y W K A++LF+DSP G GFSY T T G
Sbjct: 65 YGASE----ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSG 120
Query: 146 DFKQVHQVDQFLRKWLMDHPEFLSNPFYVGGDSYSGITVPPLVQQISNENEEGIKPLINL 205
D + H FL KW P + FY+ G+SY+G VP L Q + P+INL
Sbjct: 121 DNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVINL 176
Query: 206 QGYILGNPKTDKIVDKNSQIPFAHGMGLISNELYESLKITCGGDYANIDPSNVDCLNDNQ 265
+G+++GN D D F G++S++ Y LK C D + I PS C
Sbjct: 177 KGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHD-SFIHPSPA-CDAATD 234
Query: 266 AFSELISGLDQNHILEPRC 284
+ +D + P C
Sbjct: 235 VATAEQGNIDMYSLYTPVC 253
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/448 (26%), Positives = 192/448 (42%), Gaps = 76/448 (16%)
Query: 43 TGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFSALVYEIGPINFNILEY 102
TGY+ V E ED F++ +S +P +DP++LWL GGPGCS+ + L +E+GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGPSSIG---- 72
Query: 103 NGSLPTLHL--NPYSWTKEASILFVDSPVGTGFSYVRTPLASQTGDFKQVHQVDQFLRKW 160
P L NPYSW A+++F+D PV GFSY + S T V FL +
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELF 126
Query: 161 LMDHPEFLS--NPFYVGGDSYSGITVPPLVQQISNENEEGIKPLINLQGYILGNPKTDKI 218
PE+++ F++ G+SY+G +P +I + + NL ++GN TD +
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDPL 182
Query: 219 VDKNSQIPFAHGMG-----LISNE---LYESLKITCGGDYANID--------PSNVDCLN 262
N P A G G L S E + +SL+ G + D P+ + C N
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNN 242
Query: 263 DNQAFSELISGLDQNHILEPRCPFFSPKPRDSNGKRRSLNDNEKSQEFLDPEPALPSIGC 322
A + ++ + R +D G + ++L+ + ++G
Sbjct: 243 AQLAPYQRTG----RNVYDIR--------KDCEGGNLCYPTLQDIDDYLNQDYVKEAVGA 290
Query: 323 RSFGYMLSQNWENDYNVRKALQIRQGSKGKWQRCNYDLPYTQEIGSSFSFHVSLSTKGYR 382
Y S N++ + N A G W + PY + L +
Sbjct: 291 EVDHYE-SCNFDINRNFLFA--------GDWMK-----PYHTAV-------TDLLNQDLP 329
Query: 383 SLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDW-----RPWI--LHSQVAGYTRTYSNRMT 435
L+Y+GD D + +LG +AW L + +++ R W + +VAG ++Y T
Sbjct: 330 ILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYK-HFT 388
Query: 436 YATVKGGGHIAPEYRPAECYAMFQRWIN 463
Y V GGH+ P P +M WI+
Sbjct: 389 YLRVFNGGHMVPFDVPENALSMVNEWIH 416
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/448 (26%), Positives = 190/448 (42%), Gaps = 76/448 (16%)
Query: 43 TGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAFSALVYEIGPINFNILEY 102
TGY+ V E ED F++ +S +P +DP++LWL GGPGCS+ + L + +GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIG---- 72
Query: 103 NGSLPTLHL--NPYSWTKEASILFVDSPVGTGFSYVRTPLASQTGDFKQVHQVDQFLRKW 160
P L NPYSW A+++F+D PV GFSY + S T V FL +
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELF 126
Query: 161 LMDHPEFLS--NPFYVGGDSYSGITVPPLVQQISNENEEGIKPLINLQGYILGNPKTDKI 218
PE+++ F++ G SY+G +P +I + + NL ++GN TD +
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDPL 182
Query: 219 VDKNSQIPFAHGMG-----LISNE---LYESLKITCGGDYANID--------PSNVDCLN 262
N P A G G L S E + +SL+ G + D P+ + C N
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNN 242
Query: 263 DNQAFSELISGLDQNHILEPRCPFFSPKPRDSNGKRRSLNDNEKSQEFLDPEPALPSIGC 322
A + ++ + R +D G + ++L+ + ++G
Sbjct: 243 AQLAPYQRTG----RNVYDIR--------KDCEGGNLCYPTLQDIDDYLNQDYVKEAVGA 290
Query: 323 RSFGYMLSQNWENDYNVRKALQIRQGSKGKWQRCNYDLPYTQEIGSSFSFHVSLSTKGYR 382
Y S N++ + N A G W + PY + L +
Sbjct: 291 EVDHYE-SCNFDINRNFLFA--------GDWMK-----PYHTAV-------TDLLNQDLP 329
Query: 383 SLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDW-----RPWI--LHSQVAGYTRTYSNRMT 435
L+Y+GD D + +LG +AW L + +++ R W + +VAG ++Y T
Sbjct: 330 ILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYK-HFT 388
Query: 436 YATVKGGGHIAPEYRPAECYAMFQRWIN 463
Y V GGH+ P P +M WI+
Sbjct: 389 YLRVFNGGHMVPFDVPENALSMVNEWIH 416
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 114/241 (47%), Gaps = 14/241 (5%)
Query: 30 LPGFQGPLSFELETGYVGVGESEDAQLFYYFVKSEKNPKEDP-LLLWLTGGPGCSAFS-A 87
LPG ++F + GYV + ++ L+Y+F +++ L+LWL GGPGCS+
Sbjct: 13 LPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSIGLG 72
Query: 88 LVYEIGPINFNILEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGFSYVRTPLASQTGDF 147
+ E+G + NG +L LN Y+W K A+ILF +SP G GFSY T GD
Sbjct: 73 AMQELGAFRVHT---NGE--SLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDD 127
Query: 148 KQVHQVDQFLRKWLMDHPEFLSNPFYVGGDSYSGITVPPLVQQI-SNENEEGIKPLINLQ 206
K FL KW P + FY+ G+ SG +P L Q + N N P IN Q
Sbjct: 128 KMAQDTYTFLVKWFERFPHYNYREFYIAGE--SGHFIPQLSQVVYRNRNN---SPFINFQ 182
Query: 207 GYILGNPKTDKIVDKNSQIPFAHGMGLISNELYES-LKITCGGDYANIDPSNVDCLNDNQ 265
G ++ + T+ D GLIS+E +S LK+ G + + P + N
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNKAL 242
Query: 266 A 266
A
Sbjct: 243 A 243
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/442 (23%), Positives = 172/442 (38%), Gaps = 79/442 (17%)
Query: 50 ESEDAQLFYY-FVKSEKNPKED-PLLLWLTGGPGCSAFSALVYEIGPINFNILEYNGSLP 107
+S D + F++ F ++ N D PL++WL GGPGCS+ + E GP N S
Sbjct: 45 DSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVN------SDG 98
Query: 108 TLHLNPYSWTKEASILFVDSPVGTGFSYVRTPLASQTG------DFKQV--HQVDQFLRK 159
L+LN SW + +LF+D P GTGFS + + D + V H +D FL
Sbjct: 99 KLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMD-FLEN 157
Query: 160 WLMDHPEFLSNPFYVGGDSYSGITVPPLVQQISNENE--EGIKPLINLQGYILGNPKTDK 217
+ PE L+ + G+SY+G +P I N N+ + +L+ ++GN D
Sbjct: 158 YFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDP 217
Query: 218 IVDKNSQIPFAHGMGLISNELYESLKITCGGDYANIDPSNVDCLNDNQAFSELISGLDQN 277
S +PFA LI ++ ++ ++ +C N + S +
Sbjct: 218 NTQSLSYLPFAMEKKLID---------ESNPNFKHLTNAHENCQNLINSASTDEAAHFSY 268
Query: 278 HILEPRCPFFSPKPRDSNGKRRSLNDNEKSQEFLDPEPALPSIGCRSFGYMLSQNWENDY 337
E R+S+ K + N + D + PS G NW D
Sbjct: 269 QECENILNLLLSYTRESSQKGTADCLNMYNFNLKD---SYPSCG---------MNWPKDI 316
Query: 338 N----------VRKALQIRQGSKGKWQRCNYDLPYTQEIGSSFSFHVS---------LST 378
+ V +L + W+ C T +G+ S +S L
Sbjct: 317 SFVSKFFSTPGVIDSLHLDSDKIDHWKEC------TNSVGTKLSNPISKPSIHLLPGLLE 370
Query: 379 KGYRSLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDWR------PWILHS-------QVAG 425
G ++++GD D++ G I +L + I + WI S + +G
Sbjct: 371 SGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSG 430
Query: 426 YTRTYSNRMTYATVKGGGHIAP 447
Y + Y +T+ +V H+ P
Sbjct: 431 YVK-YDRNLTFVSVYNASHMVP 451
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 10/136 (7%)
Query: 339 VRKALQIRQGSKGKWQRCNY--DLPYTQEIGSSFSFHVSL-STKGYRSLIYSGDHDMVVP 395
VRKAL I + +W CN+ +L Y + S S ++ L S++ Y+ L+Y+GD DM
Sbjct: 20 VRKALNIPE-QLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACN 78
Query: 396 FLGTEAWIKSLNYSIIDDWRPWILH-----SQVAGYTRTYSNRMTYATVKGGGHIAPEYR 450
F+G E ++ SLN + RPW++ Q+AG+ + +S+ + + T+KG GH+ P +
Sbjct: 79 FMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDK 137
Query: 451 PAECYAMFQRWINHDP 466
P + MF R++N P
Sbjct: 138 PLAAFTMFSRFLNKQP 153
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 376 LSTKGYRSLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDWRPWIL---HSQVAGYTRTYSN 432
L G R +YSGD D VVP T + +L + W PW + +V G++ Y
Sbjct: 62 LIQAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEG 121
Query: 433 RMTYATVKGGGHIAPEYRPAECYAMFQRWINHDPL 467
+TY TV+G GH+ P +RPA+ + +F++++ +P+
Sbjct: 122 -LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPM 155
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 368 SSFSFHVSLSTKGYRSLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDWRPWILHSQVAGYT 427
S + L G R ++SGD D VVP T I +L W PW +V G++
Sbjct: 52 SMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWS 111
Query: 428 RTYSNRMTYATVKGGGHIAPEYRPAECYAMFQRWINHDPL 467
+ Y +T +V+G GH P +RP + +FQ ++ P+
Sbjct: 112 QVYKG-LTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 368 SSFSFHVSLSTKGYRSLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDWRPWILHSQVAGYT 427
S + L G R ++SGD D VVP T I +L W PW +V G++
Sbjct: 52 SMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWS 111
Query: 428 RTYSNRMTYATVKGGGHIAPEYRPAECYAMFQRWINHDPL 467
+ Y +T +V+G GH P +RP + +FQ ++ P+
Sbjct: 112 QVYKG-LTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 368 SSFSFHVSLSTKGYRSLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDWRPWILHSQVAGYT 427
S + L G R ++SGD D VVP T I +L W PW +V G++
Sbjct: 52 SMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWS 111
Query: 428 RTYSNRMTYATVKGGGHIAPEYRPAECYAMFQRWINHDPL 467
+ Y +T +V+G GH P +RP + +FQ ++ P+
Sbjct: 112 QVYKG-LTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 368 SSFSFHVSLSTKGYRSLIYSGDHDMVVPFLGTEAWIKSLNYSIIDDWRPWILHSQVAGYT 427
S + L G R ++SGD D VVP T I +L W PW +V G++
Sbjct: 54 SMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWS 113
Query: 428 RTYSNRMTYATVKGGGHIAPEYRPAECYAMFQRWINHDPL 467
+ Y +T +V+G GH P +RP + +FQ ++ P+
Sbjct: 114 QVYKG-LTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPM 152
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 136 VRTPLASQTGDFKQ--VHQVDQFLRKWLMDHPEFL 168
V P +TG+F + +H++D F+R+W D P++L
Sbjct: 101 VGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYL 135
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 136 VRTPLASQTGDFKQ--VHQVDQFLRKWLMDHPEFL 168
V P +TG+F + +H++D F+R+W D P++L
Sbjct: 101 VGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYL 135
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 161 LMDHPEFLSNPFYVGGDSYSG-ITVPPLVQQISNENEEGIK-PLINLQGYILGNPKTDKI 218
+MD+P G++ +G + ++ N +GI P+++L GY + NP
Sbjct: 168 IMDNPSLFVPAIVGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILSR 227
Query: 219 VDKNSQIPFAHGMGLISNELYESLKITCGGDYANIDPSNVDCLNDNQAFSEL 270
+ F HGMG YE + G D + D ++ ++ F+EL
Sbjct: 228 ISDEELHEFFHGMG------YEPYEFVAGFD-------DEDHMSIHRRFAEL 266
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 345 IRQGSKGKWQRCNYDLPYTQEI-GSSFSFHVSLSTKGYRSLIYSGDHDMVVPFLGTEA-- 401
+ + S+G+W + NYDL ++ GS + + L+ K R S + + +L E
Sbjct: 75 MAKNSQGQWVKVNYDLAKRDDVLGSKLTINTPLNAKKVRVYYNSTEKATGLQWLSAEQTA 134
Query: 402 -----WIKSLNYSIIDDWRPWILHSQVAGYTRTYSNRMT 435
++ S N +I R WI TY+ R+T
Sbjct: 135 GKEKPFLFSQNQAI--HARSWIPIQDTPSVRVTYTARIT 171
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 42 ETGYVGVGESEDAQLFYYFVKSEKNPKEDPLLLWLTGGPGCSAF 85
E GYV VGE+E + P E P L L GGPG +A+
Sbjct: 4 EIGYVPVGEAE-------LYVEDVGPVEGPALFVLHGGPGGNAY 40
>pdb|3LQA|G Chain G, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 332
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 198 GIKPLINLQGYILGNPKTDKIVDKNSQIPFAHGMGLISNELYESLKITC-GGDYANID 254
GIKP+++ Q + G+ +++V ++ I ++ + I L ES+ ITC G + NI+
Sbjct: 104 GIKPVVSTQLLLNGSLAEEEVVIRSENI--SNNVKTIIVHLTESVNITCIGAGHCNIN 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,706,087
Number of Sequences: 62578
Number of extensions: 725545
Number of successful extensions: 1522
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1466
Number of HSP's gapped (non-prelim): 25
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)