Query 012238
Match_columns 467
No_of_seqs 298 out of 2157
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h51_A Aspartate aminotransfer 100.0 8.1E-67 2.8E-71 525.4 37.3 397 57-467 19-418 (420)
2 3k7y_A Aspartate aminotransfer 100.0 2E-62 6.8E-67 493.2 40.4 398 57-466 3-405 (405)
3 3meb_A Aspartate aminotransfer 100.0 5.4E-57 1.8E-61 461.3 42.6 402 56-466 22-444 (448)
4 7aat_A Aspartate aminotransfer 100.0 2.8E-56 9.5E-61 449.4 39.4 399 57-464 2-401 (401)
5 4f4e_A Aromatic-amino-acid ami 100.0 8.8E-56 3E-60 448.7 41.9 397 56-464 22-420 (420)
6 4eu1_A Mitochondrial aspartate 100.0 1.8E-54 6.2E-59 437.4 35.3 395 56-464 14-409 (409)
7 3fsl_A Aromatic-amino-acid ami 100.0 1.2E-52 4E-57 422.1 43.0 393 59-463 2-397 (397)
8 1ajs_A Aspartate aminotransfer 100.0 2.9E-50 9.9E-55 406.9 41.8 402 57-467 4-412 (412)
9 1yaa_A Aspartate aminotransfer 100.0 2E-50 6.7E-55 408.2 40.1 402 56-466 2-411 (412)
10 2q7w_A Aspartate aminotransfer 100.0 1.4E-49 4.7E-54 399.6 39.4 395 59-463 2-396 (396)
11 2ay1_A Aroat, aromatic amino a 100.0 2.4E-48 8.4E-53 390.3 39.5 391 59-462 2-392 (394)
12 3rq1_A Aminotransferase class 100.0 6.9E-47 2.4E-51 383.0 32.1 380 62-466 13-415 (418)
13 3dyd_A Tyrosine aminotransfera 100.0 2.8E-46 9.5E-51 379.8 32.4 371 59-466 28-424 (427)
14 1b5p_A Protein (aspartate amin 100.0 1.5E-46 5E-51 376.5 29.3 359 64-465 10-384 (385)
15 3t18_A Aminotransferase class 100.0 3.8E-46 1.3E-50 376.9 27.6 382 59-466 9-410 (413)
16 3b46_A Aminotransferase BNA3; 100.0 1E-44 3.5E-49 370.3 26.9 358 65-462 33-443 (447)
17 3fvs_A Kynurenine--oxoglutarat 100.0 1.2E-44 4.1E-49 366.8 25.5 371 58-466 6-422 (422)
18 3tcm_A Alanine aminotransferas 100.0 4.4E-43 1.5E-47 362.9 36.9 341 103-466 108-494 (500)
19 3h14_A Aminotransferase, class 100.0 1.8E-43 6.2E-48 354.6 32.6 357 61-466 7-382 (391)
20 1gd9_A Aspartate aminotransfer 100.0 2.3E-43 7.8E-48 353.5 30.6 361 64-466 9-386 (389)
21 1j32_A Aspartate aminotransfer 100.0 4.2E-43 1.4E-47 351.5 31.0 360 66-466 11-387 (388)
22 3ihj_A Alanine aminotransferas 100.0 5.6E-43 1.9E-47 361.6 32.4 381 62-466 35-493 (498)
23 3jtx_A Aminotransferase; NP_28 100.0 3.6E-43 1.2E-47 352.8 30.0 339 80-463 27-395 (396)
24 3e2y_A Kynurenine-oxoglutarate 100.0 5.2E-44 1.8E-48 360.6 23.8 360 64-461 7-408 (410)
25 2x5d_A Probable aminotransfera 100.0 1.3E-43 4.4E-48 358.4 24.9 344 82-466 36-398 (412)
26 3aow_A Putative uncharacterize 100.0 9E-43 3.1E-47 355.9 28.5 360 65-465 61-444 (448)
27 3ele_A Amino transferase; RER0 100.0 4.2E-43 1.4E-47 352.7 25.6 341 82-466 34-396 (398)
28 1o4s_A Aspartate aminotransfer 100.0 1.8E-42 6.2E-47 347.3 29.7 356 64-465 20-388 (389)
29 3nra_A Aspartate aminotransfer 100.0 3.4E-43 1.2E-47 354.2 24.1 365 63-466 14-405 (407)
30 2o1b_A Aminotransferase, class 100.0 4.2E-43 1.4E-47 353.7 24.8 343 81-466 45-403 (404)
31 3qgu_A LL-diaminopimelate amin 100.0 5E-42 1.7E-46 350.6 29.6 346 80-465 66-439 (449)
32 3fdb_A Beta C-S lyase, putativ 100.0 3.9E-42 1.3E-46 342.8 26.4 339 82-466 22-376 (377)
33 2r2n_A Kynurenine/alpha-aminoa 100.0 7E-42 2.4E-46 347.1 28.1 371 61-466 10-424 (425)
34 1u08_A Hypothetical aminotrans 100.0 1.4E-41 4.8E-46 340.3 29.3 336 83-461 30-385 (386)
35 2x5f_A Aspartate_tyrosine_phen 100.0 5.6E-42 1.9E-46 348.2 26.6 360 83-467 47-430 (430)
36 2o0r_A RV0858C (N-succinyldiam 100.0 3.8E-42 1.3E-46 347.5 24.9 341 83-465 25-395 (411)
37 2dou_A Probable N-succinyldiam 100.0 7.8E-42 2.7E-46 340.9 26.2 337 81-463 23-375 (376)
38 3ezs_A Aminotransferase ASPB; 100.0 2.1E-41 7.3E-46 337.6 28.8 349 66-466 5-375 (376)
39 1yiz_A Kynurenine aminotransfe 100.0 1.4E-41 4.9E-46 345.1 27.9 344 83-465 37-428 (429)
40 1xi9_A Putative transaminase; 100.0 4.5E-41 1.5E-45 339.0 30.8 364 61-466 18-403 (406)
41 3piu_A 1-aminocyclopropane-1-c 100.0 1.1E-40 3.7E-45 339.4 33.8 353 78-466 32-432 (435)
42 1bw0_A TAT, protein (tyrosine 100.0 7E-41 2.4E-45 338.6 31.5 354 83-466 33-413 (416)
43 2z61_A Probable aspartate amin 100.0 8.8E-41 3E-45 332.6 29.7 344 66-464 10-369 (370)
44 3kax_A Aminotransferase, class 100.0 5.3E-41 1.8E-45 335.3 27.8 341 81-463 22-382 (383)
45 1iay_A ACC synthase 2, 1-amino 100.0 4.4E-40 1.5E-44 334.1 34.5 347 84-466 37-427 (428)
46 2gb3_A Aspartate aminotransfer 100.0 2.2E-40 7.4E-45 334.4 31.9 360 60-466 18-402 (409)
47 3ei9_A LL-diaminopimelate amin 100.0 6.3E-41 2.2E-45 340.7 28.1 335 82-465 55-427 (432)
48 3ppl_A Aspartate aminotransfer 100.0 4.8E-41 1.7E-45 341.1 26.4 348 83-466 33-420 (427)
49 3g0t_A Putative aminotransfera 100.0 3.1E-41 1.1E-45 343.3 24.9 360 80-465 41-436 (437)
50 1vp4_A Aminotransferase, putat 100.0 1.6E-40 5.3E-45 337.2 29.0 349 82-466 42-418 (425)
51 3dzz_A Putative pyridoxal 5'-p 100.0 1.5E-40 5.3E-45 332.8 28.3 344 83-467 27-390 (391)
52 2zc0_A Alanine glyoxylate tran 100.0 9E-40 3.1E-44 329.4 33.2 363 66-466 15-404 (407)
53 1v2d_A Glutamine aminotransfer 100.0 1.5E-40 5E-45 332.3 26.8 333 83-466 25-371 (381)
54 3d6k_A Putative aminotransfera 100.0 1.6E-40 5.6E-45 336.8 27.2 357 70-466 21-418 (422)
55 4dq6_A Putative pyridoxal phos 100.0 3.2E-40 1.1E-44 330.6 28.2 340 82-464 31-391 (391)
56 1c7n_A Cystalysin; transferase 100.0 2.8E-40 9.5E-45 332.2 27.3 343 83-466 31-393 (399)
57 3ly1_A Putative histidinol-pho 100.0 4.9E-39 1.7E-43 317.8 34.8 327 81-465 14-351 (354)
58 3get_A Histidinol-phosphate am 100.0 3.8E-39 1.3E-43 320.1 32.0 339 65-464 15-365 (365)
59 3ez1_A Aminotransferase MOCR f 100.0 7.6E-40 2.6E-44 331.8 27.2 348 83-466 25-415 (423)
60 2zyj_A Alpha-aminodipate amino 100.0 5.1E-39 1.7E-43 323.0 32.7 341 82-466 31-393 (397)
61 3l8a_A METC, putative aminotra 100.0 1.5E-39 5.1E-44 329.5 26.5 342 82-464 60-420 (421)
62 3asa_A LL-diaminopimelate amin 100.0 6.7E-40 2.3E-44 329.8 23.7 335 81-466 31-393 (400)
63 3g7q_A Valine-pyruvate aminotr 100.0 1.1E-39 3.6E-44 329.8 25.2 359 67-466 14-413 (417)
64 1d2f_A MALY protein; aminotran 100.0 5.4E-39 1.9E-43 321.9 29.3 341 83-466 28-389 (390)
65 3ffh_A Histidinol-phosphate am 100.0 1.8E-38 6.3E-43 314.9 31.3 321 82-463 31-363 (363)
66 3euc_A Histidinol-phosphate am 100.0 1.5E-38 5E-43 316.1 30.6 324 82-464 29-366 (367)
67 3f6t_A Aspartate aminotransfer 100.0 3.6E-40 1.2E-44 343.3 19.2 350 84-466 104-525 (533)
68 3op7_A Aminotransferase class 100.0 1.1E-38 3.7E-43 318.0 27.0 303 119-466 56-371 (375)
69 3if2_A Aminotransferase; YP_26 100.0 1E-38 3.5E-43 325.5 23.5 365 66-466 13-440 (444)
70 1fg7_A Histidinol phosphate am 100.0 3.6E-38 1.2E-42 312.3 25.9 313 84-462 30-354 (356)
71 3p1t_A Putative histidinol-pho 100.0 5.5E-37 1.9E-41 300.9 33.4 312 83-464 16-335 (337)
72 2zy4_A L-aspartate beta-decarb 100.0 4.9E-39 1.7E-43 334.9 19.9 338 85-465 106-521 (546)
73 1lc5_A COBD, L-threonine-O-3-p 100.0 4.6E-37 1.6E-41 305.1 30.3 340 66-466 8-360 (364)
74 3ftb_A Histidinol-phosphate am 100.0 8.2E-37 2.8E-41 302.6 31.5 321 82-465 25-360 (361)
75 3b1d_A Betac-S lyase; HET: PLP 100.0 6.8E-41 2.3E-45 336.1 0.0 341 83-464 31-391 (392)
76 3cq5_A Histidinol-phosphate am 100.0 1.4E-36 4.9E-41 302.2 30.2 325 85-465 32-367 (369)
77 3hdo_A Histidinol-phosphate am 100.0 4.8E-36 1.7E-40 297.3 32.6 316 83-465 26-354 (360)
78 3bwn_A AT1G70560, L-tryptophan 100.0 2.9E-38 9.9E-43 317.0 13.6 324 81-465 20-386 (391)
79 1uu1_A Histidinol-phosphate am 100.0 3.1E-36 1.1E-40 295.7 24.0 309 83-462 19-334 (335)
80 2hox_A ALLIIN lyase 1; cystein 100.0 7.3E-37 2.5E-41 310.1 13.7 327 83-465 56-424 (427)
81 3fkd_A L-threonine-O-3-phospha 100.0 1.8E-34 6.2E-39 284.8 27.5 312 83-465 15-341 (350)
82 3a2b_A Serine palmitoyltransfe 100.0 2.9E-32 9.8E-37 273.8 28.2 327 83-466 43-392 (398)
83 1t3i_A Probable cysteine desul 100.0 1.2E-30 4.3E-35 263.2 31.0 324 84-466 28-413 (420)
84 1eg5_A Aminotransferase; PLP-d 100.0 1.3E-30 4.4E-35 259.8 26.2 315 98-466 9-376 (384)
85 1kmj_A Selenocysteine lyase; p 100.0 2.7E-30 9.2E-35 259.4 28.6 325 83-466 22-405 (406)
86 3tqx_A 2-amino-3-ketobutyrate 100.0 2.9E-30 9.8E-35 258.9 27.8 326 82-466 42-396 (399)
87 1e5e_A MGL, methionine gamma-l 100.0 6.9E-30 2.4E-34 257.0 28.5 313 85-465 20-394 (404)
88 1bs0_A Protein (8-amino-7-oxon 100.0 7.1E-30 2.4E-34 255.0 27.4 320 82-462 38-383 (384)
89 2dr1_A PH1308 protein, 386AA l 100.0 1.4E-29 4.7E-34 252.6 26.4 316 100-466 29-379 (386)
90 1vjo_A Alanine--glyoxylate ami 100.0 1.1E-29 3.7E-34 254.3 23.3 308 102-464 45-393 (393)
91 1jg8_A L-ALLO-threonine aldola 100.0 7.8E-30 2.7E-34 251.0 20.6 321 84-467 4-347 (347)
92 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.3E-29 4.3E-34 251.7 22.1 325 82-467 6-371 (371)
93 1sff_A 4-aminobutyrate aminotr 100.0 8.8E-30 3E-34 257.9 21.0 338 83-466 41-424 (426)
94 2eh6_A Acoat, acetylornithine 100.0 4.3E-29 1.5E-33 248.4 24.2 327 82-463 27-375 (375)
95 1svv_A Threonine aldolase; str 100.0 1.5E-28 5E-33 242.6 27.5 331 83-466 13-358 (359)
96 1elu_A L-cysteine/L-cystine C- 100.0 3.4E-29 1.2E-33 250.1 22.5 321 84-462 16-388 (390)
97 2z9v_A Aspartate aminotransfer 100.0 8.3E-29 2.8E-33 247.7 25.1 311 100-466 18-371 (392)
98 1fc4_A 2-amino-3-ketobutyrate 100.0 1.9E-28 6.4E-33 246.1 27.0 323 82-466 44-397 (401)
99 2huf_A Alanine glyoxylate amin 100.0 1.4E-28 4.7E-33 246.2 25.8 321 81-466 16-383 (393)
100 3f9t_A TDC, L-tyrosine decarbo 100.0 2.1E-28 7.1E-33 244.6 26.9 315 103-464 43-396 (397)
101 2ch1_A 3-hydroxykynurenine tra 100.0 8.3E-29 2.8E-33 248.1 23.6 308 102-466 29-383 (396)
102 2bwn_A 5-aminolevulinate synth 100.0 4E-28 1.4E-32 243.8 28.6 327 84-466 47-400 (401)
103 4eb5_A Probable cysteine desul 100.0 3.8E-28 1.3E-32 241.9 27.2 319 94-466 4-373 (382)
104 2w8t_A SPT, serine palmitoyltr 100.0 4.7E-28 1.6E-32 245.5 28.2 325 82-466 63-415 (427)
105 4adb_A Succinylornithine trans 100.0 1.1E-28 3.8E-33 248.1 21.6 328 82-466 38-400 (406)
106 3lvm_A Cysteine desulfurase; s 100.0 3.9E-28 1.3E-32 245.5 24.3 324 82-466 20-399 (423)
107 3ruy_A Ornithine aminotransfer 100.0 9.8E-28 3.3E-32 240.2 26.9 327 82-464 35-392 (392)
108 3kki_A CAI-1 autoinducer synth 100.0 1.3E-27 4.3E-32 240.9 27.9 320 82-465 58-403 (409)
109 1iug_A Putative aspartate amin 100.0 2.3E-28 8E-33 240.6 21.5 315 102-466 12-348 (352)
110 1m32_A 2-aminoethylphosphonate 100.0 5.7E-28 1.9E-32 238.9 23.9 319 84-466 4-365 (366)
111 2ord_A Acoat, acetylornithine 100.0 3.5E-28 1.2E-32 243.9 22.6 325 83-466 40-397 (397)
112 3zrp_A Serine-pyruvate aminotr 100.0 3.9E-28 1.3E-32 241.8 22.6 322 102-466 13-363 (384)
113 1vef_A Acetylornithine/acetyl- 100.0 9.4E-28 3.2E-32 240.6 25.4 334 83-464 45-395 (395)
114 2ez2_A Beta-tyrosinase, tyrosi 100.0 2.9E-27 9.8E-32 241.7 29.0 334 82-465 32-430 (456)
115 3kgw_A Alanine-glyoxylate amin 100.0 1.6E-27 5.6E-32 238.0 24.4 308 102-466 34-388 (393)
116 3cai_A Possible aminotransfera 100.0 4.9E-27 1.7E-31 236.1 28.0 324 84-461 26-404 (406)
117 1v72_A Aldolase; PLP-dependent 100.0 2.1E-27 7E-32 234.2 24.6 327 82-466 6-353 (356)
118 3nnk_A Ureidoglycine-glyoxylat 100.0 3.3E-27 1.1E-31 237.5 26.4 319 83-466 12-390 (411)
119 2aeu_A Hypothetical protein MJ 100.0 1.1E-27 3.6E-32 238.7 22.4 319 84-466 29-371 (374)
120 4hvk_A Probable cysteine desul 100.0 9.5E-28 3.3E-32 238.5 22.0 321 95-466 5-373 (382)
121 3l44_A Glutamate-1-semialdehyd 100.0 6.2E-27 2.1E-31 237.7 26.8 335 82-466 54-430 (434)
122 2yrr_A Aminotransferase, class 100.0 2.8E-27 9.7E-32 232.7 23.3 317 102-465 11-352 (353)
123 3isl_A Purine catabolism prote 100.0 4E-27 1.4E-31 237.3 24.8 318 83-466 10-390 (416)
124 3i4j_A Aminotransferase, class 100.0 2.7E-27 9.3E-32 240.1 23.6 343 83-466 29-428 (430)
125 2eo5_A 419AA long hypothetical 100.0 1.6E-26 5.3E-31 233.8 28.0 330 83-466 42-418 (419)
126 2rfv_A Methionine gamma-lyase; 100.0 2.7E-26 9.3E-31 230.4 29.5 229 86-366 23-260 (398)
127 3k28_A Glutamate-1-semialdehyd 100.0 5.2E-26 1.8E-30 230.6 29.4 335 82-467 52-428 (429)
128 2dkj_A Serine hydroxymethyltra 100.0 1.2E-26 4.1E-31 233.2 24.4 324 83-465 23-387 (407)
129 1s0a_A Adenosylmethionine-8-am 100.0 2.7E-26 9.3E-31 232.6 27.1 338 83-466 43-424 (429)
130 3dxv_A Alpha-amino-epsilon-cap 99.9 6.7E-27 2.3E-31 237.8 22.4 340 82-466 42-425 (439)
131 3vax_A Putative uncharacterize 99.9 7.3E-28 2.5E-32 241.5 14.8 309 101-465 31-399 (400)
132 2pb2_A Acetylornithine/succiny 99.9 1.2E-26 4.1E-31 234.6 22.8 327 82-466 56-418 (420)
133 1ax4_A Tryptophanase; tryptoph 99.9 4.3E-26 1.5E-30 233.6 26.8 339 83-465 34-440 (467)
134 2oga_A Transaminase; PLP-depen 99.9 4E-26 1.4E-30 229.2 25.6 312 84-466 31-396 (399)
135 3fq8_A Glutamate-1-semialdehyd 99.9 5.8E-26 2E-30 230.1 27.0 329 82-466 51-427 (427)
136 1b9h_A AHBA synthase, protein 99.9 1.1E-25 3.7E-30 225.0 28.5 302 102-465 15-387 (388)
137 3f0h_A Aminotransferase; RER07 99.9 6.4E-26 2.2E-30 225.4 26.1 318 84-465 19-373 (376)
138 2po3_A 4-dehydrase; external a 99.9 3.5E-25 1.2E-29 224.1 32.0 310 87-465 20-385 (424)
139 3nx3_A Acoat, acetylornithine 99.9 4.1E-26 1.4E-30 228.7 24.7 329 82-466 35-395 (395)
140 2bkw_A Alanine-glyoxylate amin 99.9 3.2E-26 1.1E-30 228.2 23.8 334 83-466 4-384 (385)
141 2epj_A Glutamate-1-semialdehyd 99.9 1.3E-25 4.5E-30 227.9 25.8 328 82-466 55-431 (434)
142 1zod_A DGD, 2,2-dialkylglycine 99.9 3.6E-26 1.2E-30 232.0 21.3 338 83-466 43-432 (433)
143 4ffc_A 4-aminobutyrate aminotr 99.9 6E-26 2.1E-30 231.7 22.4 340 82-466 63-449 (453)
144 3gju_A Putative aminotransfera 99.9 1.8E-25 6.3E-30 228.6 24.9 349 82-466 50-456 (460)
145 4e77_A Glutamate-1-semialdehyd 99.9 8.6E-25 2.9E-29 221.6 28.9 331 82-466 52-429 (429)
146 3mad_A Sphingosine-1-phosphate 99.9 1.5E-25 5.1E-30 232.6 23.4 321 103-466 113-469 (514)
147 4a6r_A Omega transaminase; tra 99.9 3.4E-25 1.2E-29 226.6 25.7 349 82-466 49-449 (459)
148 2oat_A Ornithine aminotransfer 99.9 3.5E-24 1.2E-28 217.8 32.2 328 82-466 75-439 (439)
149 2cy8_A D-phgat, D-phenylglycin 99.9 2.3E-25 7.9E-30 227.5 23.6 325 83-466 57-435 (453)
150 3mc6_A Sphingosine-1-phosphate 99.9 2.6E-25 8.9E-30 229.8 24.2 325 103-466 77-437 (497)
151 3a9z_A Selenocysteine lyase; P 99.9 7.7E-25 2.6E-29 222.0 27.1 321 84-466 18-428 (432)
152 2e7u_A Glutamate-1-semialdehyd 99.9 5.2E-25 1.8E-29 222.9 25.2 322 83-463 52-424 (424)
153 3n5m_A Adenosylmethionine-8-am 99.9 8.6E-25 2.9E-29 223.2 27.0 338 82-466 48-452 (452)
154 1qz9_A Kynureninase; kynurenin 99.9 5.9E-25 2E-29 221.6 25.4 317 83-465 27-401 (416)
155 1z7d_A Ornithine aminotransfer 99.9 1.3E-24 4.4E-29 220.6 27.9 328 82-466 64-429 (433)
156 1mdo_A ARNB aminotransferase; 99.9 2.3E-24 7.8E-29 215.6 29.3 309 84-466 9-386 (393)
157 3ffr_A Phosphoserine aminotran 99.9 4.6E-25 1.6E-29 217.8 23.4 317 84-463 4-361 (362)
158 3a8u_X Omega-amino acid--pyruv 99.9 9.4E-25 3.2E-29 222.6 26.4 338 83-466 50-447 (449)
159 1ibj_A CBL, cystathionine beta 99.9 1E-25 3.4E-30 230.0 18.9 230 84-367 90-328 (464)
160 3n0l_A Serine hydroxymethyltra 99.9 1.1E-24 3.7E-29 219.7 26.2 323 84-465 26-388 (417)
161 3tfu_A Adenosylmethionine-8-am 99.9 7.2E-25 2.5E-29 223.8 24.7 338 84-466 76-453 (457)
162 3uwc_A Nucleotide-sugar aminot 99.9 1.5E-24 5E-29 215.5 25.9 312 84-466 7-371 (374)
163 3dod_A Adenosylmethionine-8-am 99.9 6.6E-25 2.2E-29 223.8 23.8 341 82-466 43-443 (448)
164 3lws_A Aromatic amino acid bet 99.9 2.3E-25 7.7E-30 220.1 18.6 286 120-463 41-356 (357)
165 3pj0_A LMO0305 protein; struct 99.9 1.1E-25 3.9E-30 222.3 15.8 302 102-462 27-358 (359)
166 3oks_A 4-aminobutyrate transam 99.9 6.4E-25 2.2E-29 224.0 21.3 341 82-465 60-450 (451)
167 3dr4_A Putative perosamine syn 99.9 3.2E-24 1.1E-28 214.6 25.1 310 83-463 22-390 (391)
168 3i5t_A Aminotransferase; pyrid 99.9 5.7E-24 2E-28 218.3 27.3 343 82-466 53-454 (476)
169 1w23_A Phosphoserine aminotran 99.9 1.9E-25 6.4E-30 220.7 15.6 313 84-465 3-359 (360)
170 2cjg_A L-lysine-epsilon aminot 99.9 2.1E-24 7.1E-29 220.1 23.7 340 83-466 54-448 (449)
171 2c81_A Glutamine-2-deoxy-scyll 99.9 3.3E-23 1.1E-27 209.2 31.9 195 98-328 10-212 (418)
172 2oqx_A Tryptophanase; lyase, p 99.9 2.1E-24 7.2E-29 221.1 22.6 333 82-465 31-441 (467)
173 1gc0_A Methionine gamma-lyase; 99.9 1.3E-23 4.4E-28 210.9 27.6 286 88-437 26-337 (398)
174 1wyu_B Glycine dehydrogenase s 99.9 8.2E-24 2.8E-28 217.1 26.4 324 84-464 67-439 (474)
175 1cs1_A CGS, protein (cystathio 99.9 2.4E-23 8.2E-28 208.0 28.7 253 124-437 50-323 (386)
176 2c0r_A PSAT, phosphoserine ami 99.9 2E-24 6.7E-29 213.8 20.5 312 84-466 4-361 (362)
177 1pff_A Methionine gamma-lyase; 99.9 7.5E-24 2.6E-28 207.0 23.2 184 130-364 2-193 (331)
178 2fnu_A Aminotransferase; prote 99.9 2.7E-23 9.3E-28 206.2 27.4 301 101-466 10-372 (375)
179 1rv3_A Serine hydroxymethyltra 99.9 4.2E-24 1.4E-28 219.6 22.1 329 84-465 45-430 (483)
180 3acz_A Methionine gamma-lyase; 99.9 1.2E-23 4.2E-28 210.4 24.6 277 124-465 57-388 (389)
181 3cog_A Cystathionine gamma-lya 99.9 1.3E-23 4.3E-28 211.1 24.8 192 124-366 65-262 (403)
182 3ecd_A Serine hydroxymethyltra 99.9 1.1E-23 3.8E-28 212.6 24.2 322 84-465 33-396 (425)
183 3hmu_A Aminotransferase, class 99.9 8.2E-24 2.8E-28 216.8 22.4 340 82-466 54-452 (472)
184 3ndn_A O-succinylhomoserine su 99.9 3E-23 1E-27 208.9 25.5 214 124-399 79-298 (414)
185 3e9k_A Kynureninase; kynurenin 99.9 3.6E-23 1.2E-27 211.9 26.0 303 128-465 113-460 (465)
186 1o69_A Aminotransferase; struc 99.9 6.6E-23 2.2E-27 205.4 26.9 301 100-464 8-385 (394)
187 3qhx_A Cystathionine gamma-syn 99.9 9.6E-23 3.3E-27 204.1 28.0 213 124-396 64-281 (392)
188 3nyt_A Aminotransferase WBPE; 99.9 4.1E-23 1.4E-27 204.9 24.4 296 102-462 14-360 (367)
189 3h7f_A Serine hydroxymethyltra 99.9 1.7E-23 5.8E-28 213.2 22.2 321 84-465 46-413 (447)
190 3gbx_A Serine hydroxymethyltra 99.9 2.4E-23 8.2E-28 209.9 22.9 310 103-465 43-395 (420)
191 2vi8_A Serine hydroxymethyltra 99.9 8.1E-24 2.8E-28 212.4 18.9 321 84-466 25-387 (405)
192 2dgk_A GAD-beta, GADB, glutama 99.9 7.1E-23 2.4E-27 209.0 25.6 317 103-466 55-434 (452)
193 2cb1_A O-acetyl homoserine sul 99.9 6.9E-22 2.4E-26 199.2 32.3 175 103-317 35-215 (412)
194 3frk_A QDTB; aminotransferase, 99.9 4.3E-23 1.5E-27 205.1 21.4 299 102-464 15-366 (373)
195 1n8p_A Cystathionine gamma-lya 99.9 1.3E-22 4.6E-27 203.0 23.6 211 124-396 53-272 (393)
196 1qgn_A Protein (cystathionine 99.9 1.7E-21 5.8E-26 197.3 31.8 214 124-399 112-331 (445)
197 2fyf_A PSAT, phosphoserine ami 99.9 9.3E-23 3.2E-27 204.5 17.1 317 83-466 39-398 (398)
198 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.1E-21 3.7E-26 200.4 23.5 287 129-463 136-455 (456)
199 3ju7_A Putative PLP-dependent 99.9 2.1E-21 7.1E-26 193.3 24.8 309 98-465 11-374 (377)
200 3hbx_A GAD 1, glutamate decarb 99.9 6.7E-21 2.3E-25 196.7 28.7 321 102-466 68-444 (502)
201 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.2E-20 4E-25 191.7 29.7 180 103-317 42-231 (437)
202 3ri6_A O-acetylhomoserine sulf 99.9 4.8E-21 1.6E-25 193.4 26.5 159 124-318 80-242 (430)
203 3nmy_A Xometc, cystathionine g 99.9 4.4E-21 1.5E-25 192.2 25.5 215 124-399 65-285 (400)
204 3ke3_A Putative serine-pyruvat 99.9 1.4E-21 4.8E-26 194.7 21.3 300 128-466 37-376 (379)
205 1js3_A DDC;, DOPA decarboxylas 99.9 2.6E-21 9E-26 199.2 23.5 328 103-466 87-474 (486)
206 2qma_A Diaminobutyrate-pyruvat 99.9 1.1E-20 3.7E-25 195.1 28.0 356 70-466 80-496 (497)
207 2fq6_A Cystathionine beta-lyas 99.9 4.1E-20 1.4E-24 185.9 28.3 166 124-328 80-252 (415)
208 2a7v_A Serine hydroxymethyltra 99.9 1.6E-20 5.6E-25 191.7 25.4 324 84-464 55-439 (490)
209 2yky_A Beta-transaminase; tran 99.8 6.5E-24 2.2E-28 215.6 0.0 330 82-466 99-460 (465)
210 3jzl_A Putative cystathionine 99.9 4.7E-20 1.6E-24 184.7 27.1 244 104-401 32-303 (409)
211 2okj_A Glutamate decarboxylase 99.9 6.6E-20 2.2E-24 189.6 28.4 321 107-466 110-502 (504)
212 3vp6_A Glutamate decarboxylase 99.9 5.2E-20 1.8E-24 190.4 27.5 324 103-466 109-505 (511)
213 2ctz_A O-acetyl-L-homoserine s 99.9 9.2E-20 3.1E-24 184.1 27.6 163 120-317 50-219 (421)
214 3i16_A Aluminum resistance pro 99.9 1.5E-19 5E-24 181.8 28.5 246 104-401 46-320 (427)
215 2x3l_A ORN/Lys/Arg decarboxyla 99.9 5.8E-21 2E-25 194.3 17.4 285 121-466 52-353 (446)
216 3ht4_A Aluminum resistance pro 99.9 8.5E-20 2.9E-24 184.3 24.1 228 124-401 63-309 (431)
217 3hvy_A Cystathionine beta-lyas 99.8 2.9E-19 9.8E-24 179.7 27.5 246 103-401 46-320 (427)
218 1ohv_A 4-aminobutyrate aminotr 99.8 2.3E-20 7.8E-25 191.3 19.5 340 82-467 62-472 (472)
219 1wyu_A Glycine dehydrogenase ( 99.8 4.6E-19 1.6E-23 179.9 26.9 321 85-463 66-437 (438)
220 3b8x_A WBDK, pyridoxamine 5-ph 99.8 7.9E-19 2.7E-23 175.3 26.5 149 100-273 11-166 (390)
221 4e1o_A HDC, histidine decarbox 99.8 4.8E-19 1.6E-23 181.9 24.9 325 103-466 92-478 (481)
222 2jis_A Cysteine sulfinic acid 99.8 2.4E-18 8.2E-23 178.3 28.0 326 103-466 121-515 (515)
223 3k40_A Aromatic-L-amino-acid d 99.8 2.1E-18 7.1E-23 176.8 23.8 335 103-466 87-471 (475)
224 1c4k_A Protein (ornithine deca 99.8 3.2E-18 1.1E-22 182.4 20.6 175 124-317 171-366 (730)
225 2vyc_A Biodegradative arginine 99.8 2.8E-17 9.7E-22 176.5 22.3 175 125-318 204-398 (755)
226 3qm2_A Phosphoserine aminotran 99.7 5.6E-17 1.9E-21 161.0 17.4 319 98-465 34-384 (386)
227 3e77_A Phosphoserine aminotran 99.7 2.5E-17 8.4E-22 162.6 14.0 315 99-465 21-374 (377)
228 3m5u_A Phosphoserine aminotran 99.7 2.1E-16 7.2E-21 155.4 19.0 322 84-466 5-360 (361)
229 4ao9_A Beta-phenylalanine amin 99.7 1.7E-15 5.8E-20 152.7 23.0 331 82-466 86-446 (454)
230 3n75_A LDC, lysine decarboxyla 99.7 8.9E-16 3E-20 162.3 19.7 171 123-317 192-379 (715)
231 3ou5_A Serine hydroxymethyltra 99.5 9.9E-13 3.4E-17 129.2 23.5 327 84-464 55-439 (490)
232 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 7.2E-12 2.5E-16 123.7 24.9 178 135-328 122-305 (501)
233 4atq_A 4-aminobutyrate transam 99.4 2.1E-11 7.3E-16 123.3 23.8 342 82-465 63-454 (456)
234 3bc8_A O-phosphoseryl-tRNA(SEC 99.4 3.7E-11 1.3E-15 120.0 23.4 160 157-328 122-287 (450)
235 4a0g_A Adenosylmethionine-8-am 99.4 8.1E-12 2.8E-16 135.2 17.5 339 84-466 381-828 (831)
236 4e3q_A Pyruvate transaminase; 99.3 4E-10 1.4E-14 114.4 27.1 345 82-466 66-468 (473)
237 3gh5_A HEX1, beta-hexosaminida 81.7 8.9 0.0003 38.7 10.9 71 190-267 204-274 (525)
238 1jak_A Beta-N-acetylhexosamini 77.9 13 0.00045 37.4 10.8 70 191-267 180-249 (512)
239 1now_A Beta-hexosaminidase bet 73.6 9.9 0.00034 38.2 8.6 68 191-270 174-243 (507)
240 1ofu_X SULA, hypothetical prot 73.1 32 0.0011 27.0 10.0 100 158-265 11-113 (119)
241 2gjx_A Beta-hexosaminidase alp 72.5 11 0.00039 37.8 8.7 66 191-267 168-233 (507)
242 4fgs_A Probable dehydrogenase 67.4 15 0.00052 33.5 7.7 101 150-258 29-134 (273)
243 3rcn_A Beta-N-acetylhexosamini 60.6 18 0.00061 36.7 7.4 76 191-266 161-241 (543)
244 1c7s_A Beta-N-acetylhexosamini 53.9 38 0.0013 36.3 8.8 121 144-266 263-417 (858)
245 3guy_A Short-chain dehydrogena 52.9 61 0.0021 28.1 8.9 94 158-257 7-102 (230)
246 3rwb_A TPLDH, pyridoxal 4-dehy 50.6 32 0.0011 30.5 6.7 94 158-257 12-110 (247)
247 1oft_A SULA, hypothetical prot 49.3 1.1E+02 0.0038 25.3 11.7 99 159-265 54-155 (161)
248 4g81_D Putative hexonate dehyd 47.6 90 0.0031 27.9 9.2 101 150-258 9-117 (255)
249 1bqc_A Protein (beta-mannanase 46.2 53 0.0018 30.0 7.7 22 248-269 64-85 (302)
250 2yxb_A Coenzyme B12-dependent 46.2 32 0.0011 28.5 5.5 59 191-262 39-97 (161)
251 1fob_A Beta-1,4-galactanase; B 45.9 1.3E+02 0.0043 28.1 10.3 74 191-274 12-85 (334)
252 3tpc_A Short chain alcohol deh 45.3 45 0.0015 29.6 6.9 94 158-257 13-115 (257)
253 1hjs_A Beta-1,4-galactanase; 4 45.3 1.1E+02 0.0039 28.4 9.9 37 238-274 49-85 (332)
254 3rd5_A Mypaa.01249.C; ssgcid, 43.1 54 0.0019 29.7 7.2 73 158-237 22-94 (291)
255 1tqj_A Ribulose-phosphate 3-ep 42.3 1.7E+02 0.0059 25.5 10.6 53 239-301 143-202 (230)
256 3ozo_A N-acetylglucosaminidase 40.8 38 0.0013 34.4 6.1 68 191-270 210-279 (572)
257 4dqx_A Probable oxidoreductase 40.7 59 0.002 29.3 7.0 94 158-257 33-131 (277)
258 3gvc_A Oxidoreductase, probabl 40.5 55 0.0019 29.6 6.7 95 158-258 35-134 (277)
259 3h7a_A Short chain dehydrogena 40.1 1.1E+02 0.0037 26.9 8.6 93 158-257 13-113 (252)
260 2yl5_A Beta-N-acetylhexosamini 39.9 22 0.00076 35.0 4.1 32 239-270 85-118 (442)
261 3grp_A 3-oxoacyl-(acyl carrier 38.6 60 0.002 29.1 6.6 97 151-256 29-130 (266)
262 3ppi_A 3-hydroxyacyl-COA dehyd 38.5 1.2E+02 0.0042 27.0 8.8 94 158-257 36-139 (281)
263 3m1a_A Putative dehydrogenase; 38.4 74 0.0025 28.5 7.3 97 151-256 7-108 (281)
264 1xp8_A RECA protein, recombina 38.3 1.1E+02 0.0037 29.1 8.6 115 149-267 73-206 (366)
265 3zq4_A Ribonuclease J 1, RNAse 37.9 1E+02 0.0035 31.2 8.8 79 175-263 322-408 (555)
266 1i4n_A Indole-3-glycerol phosp 37.0 40 0.0014 30.3 5.0 51 211-270 108-158 (251)
267 2yl6_A Beta-N-acetylhexosamini 36.5 21 0.00073 35.0 3.3 32 239-270 82-115 (434)
268 3tzq_B Short-chain type dehydr 35.6 1.1E+02 0.0037 27.3 7.9 94 158-257 17-117 (271)
269 4eso_A Putative oxidoreductase 35.6 67 0.0023 28.4 6.4 98 151-257 10-112 (255)
270 4gqr_A Pancreatic alpha-amylas 34.9 27 0.00092 34.4 3.9 30 246-275 74-103 (496)
271 4e6p_A Probable sorbitol dehyd 34.5 98 0.0034 27.3 7.4 98 151-257 10-112 (259)
272 1ccw_A Protein (glutamate muta 34.4 54 0.0018 26.2 5.0 59 191-262 24-82 (137)
273 2ya0_A Putative alkaline amylo 34.1 27 0.00093 36.7 3.9 28 248-275 254-281 (714)
274 2whl_A Beta-mannanase, baman5; 33.7 87 0.003 28.4 7.0 17 191-207 37-53 (294)
275 3pxx_A Carveol dehydrogenase; 33.7 58 0.002 29.3 5.7 93 158-256 16-126 (287)
276 4fn4_A Short chain dehydrogena 33.0 1.1E+02 0.0037 27.4 7.3 100 151-258 8-116 (254)
277 3ic5_A Putative saccharopine d 32.9 95 0.0032 23.0 6.1 90 151-266 7-97 (118)
278 2o23_A HADH2 protein; HSD17B10 32.6 1.5E+02 0.0052 25.9 8.4 97 151-256 14-121 (265)
279 3lyl_A 3-oxoacyl-(acyl-carrier 32.4 1.6E+02 0.0055 25.5 8.4 98 151-257 7-112 (247)
280 3gem_A Short chain dehydrogena 32.2 71 0.0024 28.5 6.0 95 151-256 29-127 (260)
281 4imr_A 3-oxoacyl-(acyl-carrier 32.2 2.5E+02 0.0084 25.0 9.8 97 157-257 38-139 (275)
282 2yv1_A Succinyl-COA ligase [AD 31.8 2E+02 0.0068 26.2 9.0 71 186-270 58-129 (294)
283 4dyv_A Short-chain dehydrogena 31.6 1.2E+02 0.0039 27.2 7.4 95 157-257 33-133 (272)
284 3cu2_A Ribulose-5-phosphate 3- 31.0 2.7E+02 0.0094 24.4 9.5 54 237-301 158-218 (237)
285 4ibo_A Gluconate dehydrogenase 30.9 1.4E+02 0.0049 26.5 7.9 95 157-257 31-133 (271)
286 3n74_A 3-ketoacyl-(acyl-carrie 30.7 1.1E+02 0.0037 26.9 7.0 98 151-257 11-114 (261)
287 2ew8_A (S)-1-phenylethanol deh 30.3 1.5E+02 0.0051 25.9 7.8 94 158-257 13-112 (249)
288 1lwj_A 4-alpha-glucanotransfer 30.0 45 0.0015 32.5 4.5 30 247-276 68-97 (441)
289 3l6e_A Oxidoreductase, short-c 29.7 70 0.0024 27.9 5.4 95 158-258 9-108 (235)
290 1vhx_A Putative holliday junct 29.5 1.7E+02 0.0058 23.7 7.3 60 212-273 40-102 (150)
291 2yvq_A Carbamoyl-phosphate syn 29.5 2.2E+02 0.0074 22.7 10.6 83 176-268 49-131 (143)
292 4iin_A 3-ketoacyl-acyl carrier 29.2 1E+02 0.0035 27.4 6.5 99 149-256 29-136 (271)
293 1ht6_A AMY1, alpha-amylase iso 29.2 48 0.0017 31.9 4.5 30 247-276 67-96 (405)
294 1u94_A RECA protein, recombina 29.1 88 0.003 29.6 6.2 115 149-267 62-195 (356)
295 1g94_A Alpha-amylase; beta-alp 28.7 37 0.0013 33.3 3.6 30 247-276 63-92 (448)
296 3rih_A Short chain dehydrogena 28.4 2E+02 0.0068 26.0 8.5 95 157-257 46-149 (293)
297 1y80_A Predicted cobalamin bin 28.4 71 0.0024 27.5 5.1 59 191-262 109-167 (210)
298 3op4_A 3-oxoacyl-[acyl-carrier 28.3 99 0.0034 27.1 6.2 94 158-257 15-113 (248)
299 3kux_A Putative oxidoreductase 28.0 1.7E+02 0.0057 27.3 8.1 70 186-268 55-124 (352)
300 3gaf_A 7-alpha-hydroxysteroid 27.8 1.2E+02 0.0042 26.6 6.8 95 157-257 17-118 (256)
301 2nu8_A Succinyl-COA ligase [AD 27.7 83 0.0028 28.7 5.6 71 187-270 53-123 (288)
302 1hxh_A 3BETA/17BETA-hydroxyste 27.7 1.7E+02 0.0057 25.6 7.6 97 151-256 8-109 (253)
303 2ya1_A Putative alkaline amylo 27.6 39 0.0013 37.1 3.9 28 248-275 561-588 (1014)
304 4b79_A PA4098, probable short- 27.4 1.4E+02 0.0049 26.4 7.0 132 151-310 12-143 (242)
305 3ovp_A Ribulose-phosphate 3-ep 27.3 3.1E+02 0.011 23.8 10.7 93 190-301 104-198 (228)
306 2z1k_A (NEO)pullulanase; hydro 27.2 54 0.0018 32.3 4.6 29 248-276 96-124 (475)
307 3is3_A 17BETA-hydroxysteroid d 27.2 99 0.0034 27.5 6.1 95 157-257 23-126 (270)
308 3tfo_A Putative 3-oxoacyl-(acy 27.1 1.4E+02 0.0046 26.7 7.0 95 157-257 9-111 (264)
309 1mxg_A Alpha amylase; hyperthe 27.0 56 0.0019 31.9 4.6 30 247-276 85-114 (435)
310 1uls_A Putative 3-oxoacyl-acyl 26.9 2.1E+02 0.0073 24.8 8.2 92 158-257 11-107 (245)
311 2e8y_A AMYX protein, pullulana 26.8 28 0.00097 36.6 2.5 29 248-276 315-343 (718)
312 4aie_A Glucan 1,6-alpha-glucos 26.8 54 0.0018 32.8 4.6 29 247-275 78-106 (549)
313 1gcy_A Glucan 1,4-alpha-maltot 26.7 55 0.0019 32.9 4.6 31 247-277 91-121 (527)
314 3ctl_A D-allulose-6-phosphate 26.6 3.2E+02 0.011 23.8 10.2 49 243-301 143-197 (231)
315 2fp4_A Succinyl-COA ligase [GD 26.5 3.2E+02 0.011 25.0 9.5 108 148-271 12-132 (305)
316 3t7c_A Carveol dehydrogenase; 26.5 1.9E+02 0.0065 26.1 8.0 94 158-257 34-148 (299)
317 3ezl_A Acetoacetyl-COA reducta 26.3 2.6E+02 0.0087 24.3 8.7 95 157-257 18-121 (256)
318 3edm_A Short chain dehydrogena 26.3 2.7E+02 0.0093 24.3 8.9 94 158-257 14-117 (259)
319 1wza_A Alpha-amylase A; hydrol 26.2 57 0.002 32.3 4.6 30 247-276 80-109 (488)
320 2zr9_A Protein RECA, recombina 26.1 1.1E+02 0.0039 28.7 6.4 115 149-267 60-193 (349)
321 2guy_A Alpha-amylase A; (beta- 25.9 54 0.0019 32.3 4.3 30 247-276 96-125 (478)
322 1ea9_C Cyclomaltodextrinase; h 25.8 73 0.0025 32.5 5.3 32 245-276 215-246 (583)
323 4dmm_A 3-oxoacyl-[acyl-carrier 25.7 1.1E+02 0.0039 27.1 6.2 94 158-257 34-136 (269)
324 1pjq_A CYSG, siroheme synthase 25.7 2.3E+02 0.0078 27.7 8.8 93 149-270 12-106 (457)
325 4a29_A Engineered retro-aldol 25.7 1.3E+02 0.0043 27.1 6.1 79 179-268 81-159 (258)
326 1ua7_A Alpha-amylase; beta-alp 25.6 50 0.0017 32.0 3.9 31 247-277 73-103 (422)
327 1jae_A Alpha-amylase; glycosid 25.5 51 0.0018 32.5 4.0 31 247-277 73-103 (471)
328 4hp8_A 2-deoxy-D-gluconate 3-d 25.4 2.4E+02 0.0083 24.9 8.1 99 150-258 9-110 (247)
329 3mxt_A Pantothenate synthetase 25.4 2.1E+02 0.0071 26.1 7.6 49 127-184 9-57 (285)
330 4gkb_A 3-oxoacyl-[acyl-carrier 25.3 2.1E+02 0.0072 25.4 7.8 100 150-257 7-112 (258)
331 3uve_A Carveol dehydrogenase ( 25.0 1.1E+02 0.0037 27.5 6.0 94 158-257 17-135 (286)
332 4fc7_A Peroxisomal 2,4-dienoyl 25.0 1.5E+02 0.0053 26.3 7.0 94 158-257 33-135 (277)
333 1ud2_A Amylase, alpha-amylase; 24.7 52 0.0018 32.5 3.9 29 247-275 79-107 (480)
334 3db2_A Putative NADPH-dependen 24.7 2.2E+02 0.0075 26.4 8.2 73 186-271 54-126 (354)
335 4egf_A L-xylulose reductase; s 24.7 2.1E+02 0.0071 25.3 7.8 95 157-257 25-128 (266)
336 1h1y_A D-ribulose-5-phosphate 24.5 3.4E+02 0.012 23.3 10.8 82 178-268 89-179 (228)
337 3tsm_A IGPS, indole-3-glycerol 24.5 96 0.0033 28.1 5.3 50 211-269 127-176 (272)
338 1wzl_A Alpha-amylase II; pullu 24.5 66 0.0023 32.8 4.7 30 247-276 218-247 (585)
339 3f9i_A 3-oxoacyl-[acyl-carrier 24.4 2.4E+02 0.0082 24.3 8.1 79 149-237 14-92 (249)
340 3sc4_A Short chain dehydrogena 24.3 1.8E+02 0.0062 26.0 7.4 94 158-257 15-123 (285)
341 2aaa_A Alpha-amylase; glycosid 24.3 57 0.002 32.2 4.1 30 247-276 96-125 (484)
342 2q5c_A NTRC family transcripti 24.3 1.6E+02 0.0056 24.9 6.6 42 158-206 36-78 (196)
343 3inp_A D-ribulose-phosphate 3- 24.0 3.8E+02 0.013 23.7 10.0 94 189-301 125-224 (246)
344 1ur4_A Galactanase; hydrolase, 23.9 3.3E+02 0.011 26.1 9.3 30 246-275 86-115 (399)
345 3bh4_A Alpha-amylase; calcium, 23.9 55 0.0019 32.4 3.9 29 247-275 77-105 (483)
346 2dh2_A 4F2 cell-surface antige 23.6 67 0.0023 31.2 4.4 28 248-275 81-108 (424)
347 1wpc_A Glucan 1,4-alpha-maltoh 23.5 56 0.0019 32.3 3.9 29 247-275 81-109 (485)
348 3sju_A Keto reductase; short-c 23.4 1.7E+02 0.0058 26.1 6.9 94 158-257 30-131 (279)
349 1j0h_A Neopullulanase; beta-al 23.4 74 0.0025 32.4 4.9 30 247-276 221-250 (588)
350 2wc7_A Alpha amylase, catalyti 23.2 56 0.0019 32.3 3.8 29 248-276 102-130 (488)
351 3qlj_A Short chain dehydrogena 23.0 1.4E+02 0.0048 27.4 6.4 96 157-258 32-145 (322)
352 3bzy_B ESCU; auto cleavage pro 23.0 49 0.0017 24.1 2.4 21 250-270 28-48 (83)
353 3oqb_A Oxidoreductase; structu 22.9 2.6E+02 0.0089 26.2 8.5 72 186-270 71-142 (383)
354 3moi_A Probable dehydrogenase; 22.8 1.9E+02 0.0063 27.4 7.4 11 178-188 66-76 (387)
355 3v5n_A Oxidoreductase; structu 22.8 2.3E+02 0.0078 27.2 8.1 24 247-270 146-169 (417)
356 1hvx_A Alpha-amylase; hydrolas 22.7 55 0.0019 32.8 3.6 29 247-275 80-108 (515)
357 3s55_A Putative short-chain de 22.7 2.5E+02 0.0087 24.8 8.0 94 158-257 16-129 (281)
358 3tsc_A Putative oxidoreductase 22.6 1.3E+02 0.0046 26.7 6.0 94 158-257 17-131 (277)
359 3ksu_A 3-oxoacyl-acyl carrier 22.5 3.8E+02 0.013 23.4 9.1 94 158-257 17-121 (262)
360 1wcw_A Uroporphyrinogen III sy 22.5 66 0.0023 28.6 3.9 62 176-239 7-69 (261)
361 4gmf_A Yersiniabactin biosynth 22.4 92 0.0031 29.7 5.0 24 247-270 104-127 (372)
362 3kvo_A Hydroxysteroid dehydrog 22.4 2.7E+02 0.0093 25.9 8.3 94 157-256 50-158 (346)
363 3zv4_A CIS-2,3-dihydrobiphenyl 22.3 1.6E+02 0.0054 26.4 6.5 73 158-236 11-86 (281)
364 3imf_A Short chain dehydrogena 22.3 2.1E+02 0.0073 25.0 7.3 96 157-258 11-114 (257)
365 2yv2_A Succinyl-COA synthetase 22.2 4.4E+02 0.015 23.9 11.6 72 185-270 57-130 (297)
366 3bk2_A RNAse J, metal dependen 22.2 2E+02 0.0067 29.0 7.7 79 175-263 337-423 (562)
367 1yht_A DSPB; beta barrel, hydr 22.2 49 0.0017 31.6 3.0 71 191-266 39-112 (367)
368 1vl8_A Gluconate 5-dehydrogena 22.0 2E+02 0.0068 25.4 7.1 94 158-257 27-129 (267)
369 3oec_A Carveol dehydrogenase ( 21.9 1.5E+02 0.005 27.2 6.3 95 157-257 51-165 (317)
370 3ged_A Short-chain dehydrogena 21.9 2.5E+02 0.0084 24.8 7.5 98 151-258 4-106 (247)
371 3oid_A Enoyl-[acyl-carrier-pro 21.8 2.5E+02 0.0086 24.6 7.7 95 157-257 9-112 (258)
372 3e18_A Oxidoreductase; dehydro 21.7 1.9E+02 0.0066 27.0 7.2 73 185-270 52-124 (359)
373 3faw_A Reticulocyte binding pr 21.6 68 0.0023 34.6 4.2 28 248-275 369-396 (877)
374 1zja_A Trehalulose synthase; s 21.6 78 0.0027 32.0 4.6 30 247-276 78-107 (557)
375 3osu_A 3-oxoacyl-[acyl-carrier 21.4 1.8E+02 0.006 25.3 6.5 94 158-257 10-112 (246)
376 2glx_A 1,5-anhydro-D-fructose 21.4 2.3E+02 0.0078 25.9 7.5 72 186-270 50-121 (332)
377 3dfz_A SIRC, precorrin-2 dehyd 21.2 2.9E+02 0.01 24.0 7.6 37 148-189 30-66 (223)
378 4dpp_A DHDPS 2, dihydrodipicol 21.2 4.8E+02 0.016 24.5 9.6 25 242-269 195-219 (360)
379 3rkr_A Short chain oxidoreduct 21.1 1.8E+02 0.0063 25.5 6.6 94 157-256 34-136 (262)
380 2i2x_B MTAC, methyltransferase 21.1 1.5E+02 0.0052 26.4 6.0 73 177-262 123-202 (258)
381 1pii_A N-(5'phosphoribosyl)ant 21.0 88 0.003 30.7 4.6 51 211-270 115-165 (452)
382 3r1i_A Short-chain type dehydr 21.0 2.6E+02 0.0089 24.8 7.6 94 158-257 38-139 (276)
383 1hdc_A 3-alpha, 20 beta-hydrox 21.0 1.9E+02 0.0066 25.2 6.7 97 151-256 7-108 (254)
384 3v2g_A 3-oxoacyl-[acyl-carrier 21.0 1.5E+02 0.0052 26.4 6.0 94 158-257 37-139 (271)
385 3qp9_A Type I polyketide synth 20.9 5.4E+02 0.019 25.5 10.6 102 147-257 248-372 (525)
386 3sx2_A Putative 3-ketoacyl-(ac 20.9 1.2E+02 0.0042 26.9 5.4 91 158-256 19-127 (278)
387 1m53_A Isomaltulose synthase; 20.7 83 0.0029 31.9 4.6 30 247-276 91-120 (570)
388 2vc6_A MOSA, dihydrodipicolina 20.7 1.7E+02 0.0057 26.7 6.3 34 229-269 127-163 (292)
389 3edf_A FSPCMD, cyclomaltodextr 20.5 84 0.0029 32.1 4.6 30 247-276 197-226 (601)
390 3m07_A Putative alpha amylase; 20.4 96 0.0033 31.9 4.9 31 247-277 201-231 (618)
391 3dhu_A Alpha-amylase; structur 20.3 72 0.0025 31.1 3.9 29 247-275 82-110 (449)
392 3l23_A Sugar phosphate isomera 20.3 2.7E+02 0.0094 25.1 7.8 77 190-268 34-127 (303)
393 3pgx_A Carveol dehydrogenase; 20.3 1.5E+02 0.0051 26.5 5.8 94 158-257 21-135 (280)
394 3i23_A Oxidoreductase, GFO/IDH 20.2 2.2E+02 0.0074 26.5 7.2 72 186-270 53-124 (349)
395 3lf2_A Short chain oxidoreduct 20.2 2.6E+02 0.0088 24.6 7.4 95 158-258 14-118 (265)
396 3evn_A Oxidoreductase, GFO/IDH 20.1 2.6E+02 0.0089 25.6 7.6 71 187-270 56-126 (329)
397 2p2s_A Putative oxidoreductase 20.1 3.1E+02 0.01 25.1 8.2 72 186-270 54-125 (336)
398 3v2h_A D-beta-hydroxybutyrate 20.1 2.7E+02 0.0093 24.7 7.6 94 158-257 31-134 (281)
No 1
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=8.1e-67 Score=525.36 Aligned_cols=397 Identities=44% Similarity=0.759 Sum_probs=354.5
Q ss_pred ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHH
Q 012238 57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA 136 (467)
Q Consensus 57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia 136 (467)
++|+.|+..|+++|+++.+++++++++ +|||++|.|+|+++.|++++.|++|...+++.+..+.|.|..|+++||++++
T Consensus 19 ~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia 97 (420)
T 4h51_A 19 ERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAV 97 (420)
T ss_dssp HHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred HHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHH
Confidence 689999999999999999999988875 9999999999999999989999999998887777678999999999999999
Q ss_pred HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--CCCCEEEEcCCCCcchHHHHhhCCCCe-EEeeeecCCCCC
Q 012238 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPGAKVLISSPTWGNHKNIFNDARVPW-SEYRYYDPKTVG 213 (467)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~--~~gd~Vlv~~P~y~~~~~~~~~~G~~~-~~v~~~~~~~~~ 213 (467)
+++++.. ...+++..+||.|||+|+..++.++... .|||+|++++|+|++|..+++..|++. ..+++.+++++.
T Consensus 98 ~~~~g~~---~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~ 174 (420)
T 4h51_A 98 KIIYGNT---VELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVS 174 (420)
T ss_dssp HHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTE
T ss_pred HHhcCCC---ccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccC
Confidence 9987653 2356788888999999999886665433 499999999999999999999999974 456776677788
Q ss_pred CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238 214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293 (467)
Q Consensus 214 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (467)
+|++.+.+.++..+++++++++++||||||.+++.++|++|+++|+++++++|+||+|++|.+++.+.+.+.++.+.+..
T Consensus 175 ~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T 4h51_A 175 LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRG 254 (420)
T ss_dssp ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhC
Confidence 99999999998888899999999999999999999999999999999999999999999999976444555666677778
Q ss_pred CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW 373 (467)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 373 (467)
+++++++||||+|+++|||+||+++++...+...+ +.+++....+..++++|.++|.++..+|+++.+..+|
T Consensus 255 ~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~--------~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~ 326 (420)
T 4h51_A 255 IEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD--------VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEW 326 (420)
T ss_dssp CCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred ceEEEEeccccccccccCceEEEEecccCHHHHHH--------HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHH
Confidence 89999999999999999999999877777776666 7788888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHH
Q 012238 374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCE 453 (467)
Q Consensus 374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~ 453 (467)
+++++.++++++++|+.|.+.|+ ++|.+++|.++.+++|||+|++++.++++.| +++||+++++||||++++++++++
T Consensus 327 ~~~~~~m~~r~~~~R~~l~~~L~-~~g~~~~~~~i~~q~GmF~~~gls~e~v~~L-~e~~Vy~~~~gRis~Agl~~~ni~ 404 (420)
T 4h51_A 327 EAELSAMAERIRTMRRTVYDELL-RLQTPGSWEHVINQIGMFSFLGLSKAQCEYC-QNHNIFITVSGRANMAGLTHETAL 404 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTCSSCCTHHHHCCSSEEECCCCHHHHHHH-HHTTEECCTTCEEEGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCeecCCCceEEecCcCHHHHHHH-HhCCEEEcCCCEEEeccCCHHHHH
Confidence 99999999999999999999999 9988888999999999999999999998754 668999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 012238 454 YLADAIIDSYHNVS 467 (467)
Q Consensus 454 ~~~~~l~~~l~~~~ 467 (467)
+++++|.+++++++
T Consensus 405 ~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 405 MLAQTINDAVRNVN 418 (420)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 2
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=2e-62 Score=493.23 Aligned_cols=398 Identities=27% Similarity=0.526 Sum_probs=339.6
Q ss_pred ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHH-hcCCCCcCCCCcchHHHHHHH
Q 012238 57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVT 135 (467)
Q Consensus 57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~-~~~~~~~Y~~~~G~~~lr~ai 135 (467)
|+|++++..++++++++.+.++++..+++|||++|.|+|+++.+++++.++++.. ++ +.+..++|.|..|.++||+++
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai 81 (405)
T 3k7y_A 3 KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT 81 (405)
T ss_dssp CGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred chhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence 5789999999999999999999887789999999998888776666899999987 54 344458899999999999999
Q ss_pred HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238 136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (467)
Q Consensus 136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 215 (467)
++++.+.++..++++++.+++|.|+++|++++.+++..+.| |+|++++|+|+.|..+++.+|++++.+|+.+++++++|
T Consensus 82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 160 (405)
T 3k7y_A 82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDIN 160 (405)
T ss_dssp HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEEC
T ss_pred HHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcC
Confidence 99998877777777765333499999999998555433348 99999999999999999999999999998656678999
Q ss_pred hhhHHHHHHcCCCCcEEEEeCC-CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238 216 FEGMIADIKAAPGGSFILLHGC-AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294 (467)
Q Consensus 216 ~~~l~~~l~~~~~~~~~i~i~~-p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (467)
++.+++.+++.+ +++++++++ ||||||.+++.+++++|+++|++||++||+||+|.++.+++.+.+..+++.+....+
T Consensus 161 ~~~l~~~l~~~~-~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 239 (405)
T 3k7y_A 161 YDLFLNDLRNIP-NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI 239 (405)
T ss_dssp HHHHHHHHHHSC-SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTC
T ss_pred HHHHHHHHHhCC-CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCC
Confidence 999999997532 344555554 599999999999999999999999999999999999998643334445656666668
Q ss_pred eEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK 374 (467)
Q Consensus 295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 374 (467)
++|+++||||+|+++|||+||+++++++++++++ +..+++...+..+++++.++|.++..+|.++.+.++|.
T Consensus 240 ~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~ 311 (405)
T 3k7y_A 240 AFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKI--------VFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWI 311 (405)
T ss_dssp CEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred cEEEEeeCCccCCCccccceEEEEEeCCHHHHHH--------HHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999755678888877 76667776666677888999999999999988888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhh
Q 012238 375 AEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAK 451 (467)
Q Consensus 375 ~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~ 451 (467)
++++.++++|+++|+.+.+.|++ ++|.++.|++.+|+||||+|++++.++++++ +++||++.|+||||++++++++
T Consensus 312 ~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~~~~~L-~~~gV~v~p~~Ris~a~~~~~~ 390 (405)
T 3k7y_A 312 KELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNN 390 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGGGTTTT-TTTTEECCTTSEEEGGGCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHHHHHHH-HHCCEeecCCCeEEEeccCHHH
Confidence 99999999999999999999973 4566666899999999999999887888777 8889999999999999888999
Q ss_pred HHHHHHHHHHHHHhc
Q 012238 452 CEYLADAIIDSYHNV 466 (467)
Q Consensus 452 i~~~~~~l~~~l~~~ 466 (467)
+++++++|+++++.+
T Consensus 391 i~~~~~~i~~~~~~~ 405 (405)
T 3k7y_A 391 VDYIADKICLSLSQI 405 (405)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998753
No 3
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=5.4e-57 Score=461.31 Aligned_cols=402 Identities=42% Similarity=0.765 Sum_probs=350.1
Q ss_pred cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHH--hcCCCCcCCCCcchHHHHH
Q 012238 56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERGENKEYLPIEGLAAFNK 133 (467)
Q Consensus 56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~--~~~~~~~Y~~~~G~~~lr~ 133 (467)
||.|++++..++++|+.+.+++++++++.+|||++|.|+|.++.+++.+.+++++.+.. .......|.+..|.+++|+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~ 101 (448)
T 3meb_A 22 MSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE 101 (448)
T ss_dssp CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred hhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence 57899999999999999999999888888999999999998888888899999987776 2233578999999999999
Q ss_pred HHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCCeEEeeeecC
Q 012238 134 VTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDP 209 (467)
Q Consensus 134 aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~ 209 (467)
++++++.+.....+++++|+++||+||++|+++++.++..+.+||+|++++|+|..|...++ ..|++++.+|+.++
T Consensus 102 ~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 181 (448)
T 3meb_A 102 AAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRK 181 (448)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCT
T ss_pred HHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecccc
Confidence 99999866544445578999999999999999975567778899999999999999999999 99999999998655
Q ss_pred C-CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238 210 K-TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288 (467)
Q Consensus 210 ~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 288 (467)
+ ++++|++.+++.+++.+.+++++++++||||||.+++.++|++|+++|++||+++|+||+|+++.+++.+.+.+++..
T Consensus 182 ~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 261 (448)
T 3meb_A 182 DGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRM 261 (448)
T ss_dssp TSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHH
T ss_pred ccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHH
Confidence 5 689999999999986555788999999999999999999999999999999999999999999998642223456666
Q ss_pred HHhcCCeEEEEecCccCcccCCCccceEEEec--------CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHH
Q 012238 289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVC--------SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIV 360 (467)
Q Consensus 289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (467)
+...++++++++||||+||++|+|+||+.+++ ++++.++. +..++....+..+.+++.++|.++
T Consensus 262 ~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~--------l~~~l~~~~~~~~~~~~~~~~~a~ 333 (448)
T 3meb_A 262 FVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAA--------MVSGMTLQIRKTWSMSAIHGAYIV 333 (448)
T ss_dssp HHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHH--------HHHHHHHHHhcccCCccHHHHHHH
Confidence 66677899999999999999999999985445 45645545 555577767777888999999999
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-----CcccccCCcceEEecCCCHHHHHHHHHcccEE
Q 012238 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGK-----DWSFILRQIGMFSFTGLNKAQSDNMTNKWHVY 435 (467)
Q Consensus 361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~-----~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~ 435 (467)
..+|.++.+.++|.+++++++++++++|+.+.+.|+ ++++++ .|.+..+++|+|+|.+++.+++..+++++||+
T Consensus 334 ~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gV~ 412 (448)
T 3meb_A 334 QVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLA-KRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIY 412 (448)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCSTTTCCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEE
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCcCcccccceeCCCceEEEecCCCHHHHHHHHHhCCEE
Confidence 999999988889988899999999999999999999 887665 47888899999999999999999998889999
Q ss_pred EeCC-CeEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 436 MTKD-GRISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 436 v~~g-gRis~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+.|| ||||++.++++++++++++|+++++++
T Consensus 413 v~~G~gRis~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 413 LVKAGGRMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp ECSGGGEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred EeCCCcEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 9996 699999888899999999999998764
No 4
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=2.8e-56 Score=449.37 Aligned_cols=399 Identities=50% Similarity=0.899 Sum_probs=345.0
Q ss_pred ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHH
Q 012238 57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA 136 (467)
Q Consensus 57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia 136 (467)
|.|+.++..++++++.+.+.++.+.++++|||++|.|+|..+.|++.+.+++++.+.........|.+..|.+++|++++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia 81 (401)
T 7aat_A 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHH
Confidence 67889999999999999999998887889999999998888877778899999988775434578999899999999999
Q ss_pred HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (467)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~-~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 215 (467)
+++...+|..+++++|++++|+||+++++++...+. .+.|||+|++++|+|..|...++..|++++.+|+++++++++|
T Consensus 82 ~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 161 (401)
T 7aat_A 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD 161 (401)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred HHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccC
Confidence 999988888888999977779999999999754433 2368999999999999999999999999999998766678999
Q ss_pred hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (467)
Q Consensus 216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (467)
++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+..++..+....++
T Consensus 162 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T 7aat_A 162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241 (401)
T ss_dssp HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCc
Confidence 99999988765567899999999999999999999999999999999999999999999876321123445455566789
Q ss_pred EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA 375 (467)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 375 (467)
+++++||||.||++|+|+||++++.++++..+. +..++....+..+.+++..+|.++..+++++.+.+.|.+
T Consensus 242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (401)
T 7aat_A 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKR--------VESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLV 313 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEecCCcccccccCceEEEEEEeCCHHHHHH--------HHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999755567776555 555566666666778888899999889998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHH
Q 012238 376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYL 455 (467)
Q Consensus 376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~ 455 (467)
++++++++++++|+++.+.|+ +++.+..+.+..|++|+|+|.+++.+++..+++++||++.+++|||++..++++++++
T Consensus 314 ~~~~~~~~~~~~r~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~~~Ris~~~~~~~~i~~~ 392 (401)
T 7aat_A 314 EVKGMADRIISMRTQLVSNLK-KEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYL 392 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccCCCeEEeccCChhhHHHH
Confidence 899999999999999999999 8875555788889999999999999889888888899999999999998888889999
Q ss_pred HHHHHHHHH
Q 012238 456 ADAIIDSYH 464 (467)
Q Consensus 456 ~~~l~~~l~ 464 (467)
+++|+++++
T Consensus 393 ~~~l~~~~~ 401 (401)
T 7aat_A 393 AHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998863
No 5
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=8.8e-56 Score=448.72 Aligned_cols=397 Identities=42% Similarity=0.755 Sum_probs=345.1
Q ss_pred cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHH
Q 012238 56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT 135 (467)
Q Consensus 56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai 135 (467)
||.++++...++++++++.+.++.+..+++|||++|.|+|+++.+++++.+++++.+.+.......|.+..|.+++|+++
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~i 101 (420)
T 4f4e_A 22 MSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASV 101 (420)
T ss_dssp CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHH
T ss_pred cCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHH
Confidence 46889999999999999999998777789999999988777777766799999999988765557899999999999999
Q ss_pred HHHHhCCCCcccccC--ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCC
Q 012238 136 AELLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG 213 (467)
Q Consensus 136 a~~l~~~~~~~~~~~--~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 213 (467)
++++.+..+..++++ +|++ |+||++++.+++.++..+.+||+|++++|+|..|...++..|++++.+|+.++++++
T Consensus 102 a~~l~~~~~~~~~~~~~~i~~--t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (420)
T 4f4e_A 102 QKLLLGDDSPLIAAGRVVTAQ--ALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG 179 (420)
T ss_dssp HHHHHCTTCHHHHTTCEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred HHHhcCCCccccccCceEEEE--CCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence 999988777666788 8888 999999999986666678899999999999999999999999999999986566788
Q ss_pred CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238 214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293 (467)
Q Consensus 214 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (467)
+|++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. +.+..++..+....
T Consensus 180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~ 258 (420)
T 4f4e_A 180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAAAN 258 (420)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHhcC
Confidence 99999999998655678999999999999999999999999999999999999999999999862 22345565665667
Q ss_pred CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW 373 (467)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 373 (467)
+++++++||||.|+++|+|+||+++++++++.++. +..+++...+..+.+++.++|.++..+|.+..+.++|
T Consensus 259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 330 (420)
T 4f4e_A 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAAR--------VLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASW 330 (420)
T ss_dssp CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHH
T ss_pred CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHH--------HHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHH
Confidence 89999999999999999999999755667777766 5555666655667788889999999999998888778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHH
Q 012238 374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCE 453 (467)
Q Consensus 374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~ 453 (467)
.+++++++++++++|+.+.+.|+ +++.+.++.+..+++|+|+|++++.+++.++++++||++.++||||++.+++++++
T Consensus 331 ~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~~Ris~~~~~~~~i~ 409 (420)
T 4f4e_A 331 VQELGEMRDRIRAMRNGLVERLK-AAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLD 409 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCCCeEEEecCCHHHHH
Confidence 88899999999999999999999 77432237888899999999999988888888888999999999999987889999
Q ss_pred HHHHHHHHHHH
Q 012238 454 YLADAIIDSYH 464 (467)
Q Consensus 454 ~~~~~l~~~l~ 464 (467)
+++++|+++++
T Consensus 410 ~~~~~l~~~l~ 420 (420)
T 4f4e_A 410 VVANAIAAVLK 420 (420)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998863
No 6
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=1.8e-54 Score=437.43 Aligned_cols=395 Identities=42% Similarity=0.774 Sum_probs=321.3
Q ss_pred cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHH
Q 012238 56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT 135 (467)
Q Consensus 56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai 135 (467)
.|+|++++..++++++++.++++++..+++|||++|.|.|..+.+.+.+.+.++ . ......|.+..|.++||+++
T Consensus 14 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~-~~~~~~y~~~~g~~~lr~~i 88 (409)
T 4eu1_A 14 AQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA----T-LGTNMDYAPVTGIASFVEEA 88 (409)
T ss_dssp -------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC----C-CCSCCCCCCTTCCHHHHHHH
T ss_pred hhHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc----C-ccccccCCCCCCcHHHHHHH
Confidence 468899999999999999999998888899999999987766655555555544 2 33347899999999999999
Q ss_pred HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCC
Q 012238 136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214 (467)
Q Consensus 136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 214 (467)
++++.+..+..+++++|..++|.||++++.++..++..+ .+||+|++++|+|..|...++..|++++.+++.+++++++
T Consensus 89 a~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (409)
T 4eu1_A 89 QKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGL 168 (409)
T ss_dssp HHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEE
T ss_pred HHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcC
Confidence 999877665556678886556899999999875444433 4899999999999999999999999999999865667899
Q ss_pred ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238 215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294 (467)
Q Consensus 215 d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (467)
|++.+++.+++.+.+++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++...+..++..+.+..+
T Consensus 169 d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (409)
T 4eu1_A 169 NLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP 248 (409)
T ss_dssp CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS
T ss_pred cHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC
Confidence 99999999976445678888899999999999999999999999999999999999999987631112344555555667
Q ss_pred eEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK 374 (467)
Q Consensus 295 ~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 374 (467)
++++++||||+||++|+|+||+.+++++++.++. +..+++...+..+.+++.+.|.++..+|.+..+.++|.
T Consensus 249 ~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (409)
T 4eu1_A 249 NLIVAQSFSKNFGLYGHRCGALHISTASAEEAKR--------LVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWK 320 (409)
T ss_dssp CCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHH--------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred cEEEEecCcccccCccCCceEEEEEeCCHHHHHH--------HHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHH
Confidence 8999999999999999999997433688886555 55557666666677888999999999999888878888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHH
Q 012238 375 AEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEY 454 (467)
Q Consensus 375 ~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~ 454 (467)
+++++++++++++++++.+.|+ ++|.|+.|++..+++|+|+|.+++.+++.++++++||++.|++||+++..+++++++
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~p~~Ri~~~~~~~~~i~~ 399 (409)
T 4eu1_A 321 KELKQMSSRIAEVRKRLVSELK-ACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEY 399 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEEcCCCEEEEEecCHhhHHH
Confidence 8899999999999999999999 887666678888999999999999888999998889999999999999888999999
Q ss_pred HHHHHHHHHH
Q 012238 455 LADAIIDSYH 464 (467)
Q Consensus 455 ~~~~l~~~l~ 464 (467)
++++|+++++
T Consensus 400 ~~~~l~~~l~ 409 (409)
T 4eu1_A 400 VSQAIHNVTK 409 (409)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998763
No 7
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=1.2e-52 Score=422.10 Aligned_cols=393 Identities=40% Similarity=0.714 Sum_probs=336.1
Q ss_pred ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHH-HHhcCCCCcCCCCcchHHHHHHHHH
Q 012238 59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVTAE 137 (467)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~lr~aia~ 137 (467)
+++++..++++++.+.+.++.+..+++|||++|.|.|.++.+++++.+.+++.+ .+.......|.+..|.+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~ 81 (397)
T 3fsl_A 2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAP 81 (397)
T ss_dssp CTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHH
T ss_pred cccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHH
Confidence 567888999999999999988888899999999887777766667999999998 8765445789888999999999999
Q ss_pred HHhCCCCcccccC--ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238 138 LLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (467)
Q Consensus 138 ~l~~~~~~~~~~~--~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 215 (467)
++....+..++++ +|++ |+|++++++++.+++..+.+||+|+++.|+|..|...++..|++++.+++.+++++++|
T Consensus 82 ~~~~~~~~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 159 (397)
T 3fsl_A 82 LLFGADHPVLKQQRVATIQ--TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVR 159 (397)
T ss_dssp HHHCTTCHHHHTTCEEEEE--ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEEC
T ss_pred HHhcCCcccccccceEEEE--cCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCc
Confidence 9988776666788 8888 99999999998655666789999999999999999999999999999998656678899
Q ss_pred hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (467)
Q Consensus 216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (467)
++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. +.+..++..+....++
T Consensus 160 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~ 238 (397)
T 3fsl_A 160 FNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLP 238 (397)
T ss_dssp HHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhcCCC
Confidence 999999998655678999999999999999999999999999999999999999999998762 1233455555566789
Q ss_pred EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA 375 (467)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 375 (467)
+++++||||.+|++|+|+||+++.+++++.++. +...++...+..+.+++.++|.++..++.+..+..+|.+
T Consensus 239 ~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 310 (397)
T 3fsl_A 239 ALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGR--------VLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLK 310 (397)
T ss_dssp EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred EEEEecccccccCcCCCeeEEEEecCCHHHHHH--------HHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999744567777766 444455544555667788899999999998888777788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHH
Q 012238 376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYL 455 (467)
Q Consensus 376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~ 455 (467)
++++++++++++++.+.+.|+ +++...++.+..+++|+|+|++++.+++.++++++||.+.+|+||+++..++++++++
T Consensus 311 ~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~Ris~~~~~~~~i~~~ 389 (397)
T 3fsl_A 311 EVEEMRTRILAMRQELVKVLS-TEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRV 389 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTCEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEEecCHhhHHHH
Confidence 899999999999999999999 7742213677888999999999998888888888999999999999998788999999
Q ss_pred HHHHHHHH
Q 012238 456 ADAIIDSY 463 (467)
Q Consensus 456 ~~~l~~~l 463 (467)
+++|++++
T Consensus 390 ~~~l~~~l 397 (397)
T 3fsl_A 390 AKAFAAVM 397 (397)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhC
Confidence 99998764
No 8
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=2.9e-50 Score=406.90 Aligned_cols=402 Identities=46% Similarity=0.821 Sum_probs=330.8
Q ss_pred ccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHh-cCCCCcCCCCcchHHHHHHH
Q 012238 57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKVT 135 (467)
Q Consensus 57 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~ai 135 (467)
|.++++...+++++.++.+..+++.++++|||+.|.|.|.++.+++++.+.+++.+.+. ......|.+..|.+++|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred chhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence 46777888889999999888876666789999999987777666667899999988872 22346798899999999999
Q ss_pred HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHHhhCCCC-eEEeeeecC
Q 012238 136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDP 209 (467)
Q Consensus 136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g-----d~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~ 209 (467)
++++.+.++..+++++|++++|+||++|++++..++..+.+| |+|+++.|+|..|...++..|++ ++.+++.++
T Consensus 84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 163 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT 163 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence 999877777777789998777999999999986555566799 99999999999999999999999 999998655
Q ss_pred CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238 210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (467)
Q Consensus 210 ~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 289 (467)
+++++|++.+++.+++.+.+++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+...+++..+
T Consensus 164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 243 (412)
T 1ajs_A 164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243 (412)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHH
Confidence 67889999999999864447788889999999999999999999999999999999999999999875200012244434
Q ss_pred HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL 369 (467)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 369 (467)
....++++++.||||.+|++|+|+||++....+++.++. +..++.......+.+++.++|.++..+|++..+
T Consensus 244 ~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 315 (412)
T 1ajs_A 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILR--------VLSQMQKIVRVTWSNPPAQGARIVARTLSDPEL 315 (412)
T ss_dssp HHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHH
T ss_pred hccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHH--------HHHHHHHHHhcccCCCChHHHHHHHHHHcCcch
Confidence 445678999999999999999999999611127775555 444455544455666788889999888987765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCCh
Q 012238 370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSL 449 (467)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~ 449 (467)
...|.+++++.+++++++++++.+.|+ +++.|..+++..+.+|+|+|.+++.+++..+++++||.+.+++||+++..++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~ 394 (412)
T 1ajs_A 316 FHEWTGNVKTMADRILSMRSELRARLE-ALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTT 394 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCeeEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCCcEEEeeeCCH
Confidence 555667788999999999999999999 8764444677788999999999888888888888899999999999996688
Q ss_pred hhHHHHHHHHHHHHHhcC
Q 012238 450 AKCEYLADAIIDSYHNVS 467 (467)
Q Consensus 450 ~~i~~~~~~l~~~l~~~~ 467 (467)
+++++++++|++++++++
T Consensus 395 ~~i~~~~~~l~~~l~~~~ 412 (412)
T 1ajs_A 395 KNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp TTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998764
No 9
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=2e-50 Score=408.24 Aligned_cols=402 Identities=41% Similarity=0.746 Sum_probs=328.4
Q ss_pred cccccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHH-HHhcCCCCcCCCCcchHHHHHH
Q 012238 56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKV 134 (467)
Q Consensus 56 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~lr~a 134 (467)
+|+|+++...+++++..+.+.++.+.++++|||+.|.|+|.++.+++++.+.+++.+ .+..+....|.+..|.+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ 81 (412)
T 1yaa_A 2 ATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN 81 (412)
T ss_dssp TTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred cchhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHH
Confidence 456788888999999999988876666789999999998887776668999999998 7754444679888999999999
Q ss_pred HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCC
Q 012238 135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214 (467)
Q Consensus 135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 214 (467)
+++++.+.+|..+++++|++++|+||+++++++..++..+.+||+|+++.|+|..|...++..|++++.+++.+++++++
T Consensus 82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 161 (412)
T 1yaa_A 82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL 161 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCcc
Confidence 99999777777777899988889999999999865566667999999999999999999999999999999843446889
Q ss_pred ChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238 215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294 (467)
Q Consensus 215 d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (467)
|++.+++.+++.+.++.++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...+..++..+....+
T Consensus 162 d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
T 1yaa_A 162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS 241 (412)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCC
Confidence 99999999975433467777799999999999999999999999999999999999999987520001223434434445
Q ss_pred ---eEEEEecCccCcccCCCccceEEEec----CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh
Q 012238 295 ---ELLVAQSYSKNLGLYAERIGAMNVVC----SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP 367 (467)
Q Consensus 295 ---~~i~~~S~SK~~~~~G~RiG~~~~v~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ 367 (467)
++++++||||.+|++|+|+||+++++ .+++..+. +..++....+..+.+++.+.|.++..+|++.
T Consensus 242 ~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~--------l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~ 313 (412)
T 1yaa_A 242 TVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPA--------VTSQLAKIIRSEVSNPPAYGAKIVAKLLETP 313 (412)
T ss_dssp TTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH
T ss_pred CCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHH--------HHHHHHHHHhhccCCCChHHHHHHHHHhCCH
Confidence 89999999999998899999995223 15552222 3333655444556677888999999999887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccC
Q 012238 368 ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGL 447 (467)
Q Consensus 368 ~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~ 447 (467)
.+.+.|.+++++++++++++++.+.+.|+ +++.++.+++..+++|+|+|.+++.+++.++++++||.+.+..|||++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~ 392 (412)
T 1yaa_A 314 ELTEQWHKDMVTMSSRITKMRHALRDHLV-KLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGL 392 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEeccCcEEEEccC
Confidence 66666777789999999999999999999 77622236777889999999998887788888778999999789999876
Q ss_pred ChhhHHHHHHHHHHHHHhc
Q 012238 448 SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 448 ~~~~i~~~~~~l~~~l~~~ 466 (467)
+++++++++++|+++++.+
T Consensus 393 ~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 393 NQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp CTTTHHHHHHHHHHHHHHC
T ss_pred CHhHHHHHHHHHHHHHHhh
Confidence 8899999999999998764
No 10
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=1.4e-49 Score=399.61 Aligned_cols=395 Identities=44% Similarity=0.775 Sum_probs=305.3
Q ss_pred ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238 59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138 (467)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~ 138 (467)
|+++...++++++.+...+..+.++++|||+.|.|.|.++.+++++.+.+++.+.+.......|.+..|.+++|++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 81 (396)
T 2q7w_A 2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQEL 81 (396)
T ss_dssp CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHH
T ss_pred ccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHH
Confidence 45677788888888877776555568999999998776664455789999998876543346898899999999999999
Q ss_pred HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG 218 (467)
Q Consensus 139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 218 (467)
+.+..+..+++++|++++|+||+++++++..++..+.+||+|+++.|+|..|...++..|++++.++..+++++++|++.
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 161 (396)
T 2q7w_A 82 LFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDA 161 (396)
T ss_dssp HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred HhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHH
Confidence 87665555678888765689999999998555555679999999999999999999999999999998644578899999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238 219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (467)
Q Consensus 219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (467)
+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. .....++..+....+++++
T Consensus 162 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~i~ 240 (396)
T 2q7w_A 162 LINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKELIV 240 (396)
T ss_dssp HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCH-HHHTHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCc-cchhHHHHHHHhcCCcEEE
Confidence 999997543457889999999999999999999999999999999999999999998641 0012244444444678999
Q ss_pred EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 378 (467)
Q Consensus 299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~ 378 (467)
++||||.+|++|+|+||++.++.+++.++. +...+....+..+.+++.++|.++..+|++..+.+.|.++++
T Consensus 241 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 312 (396)
T 2q7w_A 241 ASSYSXNFGLYNERVGACTLVAADSETVDR--------AFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELT 312 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred EEeccccccccccccceEEEEcCCHHHHHH--------HHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHH
Confidence 999999999999999999611135654444 444355444445666788899999999988756666677788
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHHHH
Q 012238 379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 458 (467)
Q Consensus 379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~~~ 458 (467)
+.+++++++++.+.+.|+ +++.+..+++..+++|+|+|++++.+++.++++++||.+.+|.||+++..+++++++++++
T Consensus 313 ~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~e~i~~~~~~ 391 (396)
T 2q7w_A 313 DMRQRIQRMRQLFVNTLQ-EKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEA 391 (396)
T ss_dssp HC-CHHHHHHHHHHHHHH-HTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecCCceEEEeecCHHHHHHHHHH
Confidence 999999999999999999 8763223677788999999999888888888888899999988999996688999999999
Q ss_pred HHHHH
Q 012238 459 IIDSY 463 (467)
Q Consensus 459 l~~~l 463 (467)
|++++
T Consensus 392 l~~~l 396 (396)
T 2q7w_A 392 IVAVL 396 (396)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98764
No 11
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=2.4e-48 Score=390.35 Aligned_cols=391 Identities=38% Similarity=0.664 Sum_probs=315.7
Q ss_pred ccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238 59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138 (467)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~ 138 (467)
|+++...+++++.++.+.++.+.++++|||+.|.|.+.++.+++++.+.+++.+.+.......|.+..|.+++|++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 81 (394)
T 2ay1_A 2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL 81 (394)
T ss_dssp GGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred CccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHH
Confidence 56678888999999888887666678999999998766654455789999998877543457898889999999999999
Q ss_pred HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG 218 (467)
Q Consensus 139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 218 (467)
+.+. .+++++|++++|+||++|++++..++..+.+||+|+++.|+|..|...++..|++++.+++++++++++|++.
T Consensus 82 ~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 158 (394)
T 2ay1_A 82 ILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG 158 (394)
T ss_dssp HHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred HhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHH
Confidence 8543 1247788766789999999998555544559999999999999999999999999999998644578899999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238 219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (467)
Q Consensus 219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (467)
+++.+++.+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++. ..+..++..+...++++++
T Consensus 159 l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~i~ 237 (394)
T 2ay1_A 159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL-EEDAAGTRLIASRIPEVLI 237 (394)
T ss_dssp HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCH-HHHHHHHHHHHHHCSSEEE
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCc-ccchHHHHHHhhcCCCEEE
Confidence 999998643457888889999999999999999999999999999999999999988641 0012234334444678999
Q ss_pred EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 378 (467)
Q Consensus 299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~ 378 (467)
++||||.+|++|+|+||++.++.++++++. +...+....+..+.+++.++|.++..+|++..+.+.|.++++
T Consensus 238 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 309 (394)
T 2ay1_A 238 AASCSKNFGIYRERTGCLLALCADAATREL--------AQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELE 309 (394)
T ss_dssp EEECTTTTTCGGGCEEEEEEECSSHHHHHH--------HHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEeccCCCcCcCCccceEEEEeCCHHHHHH--------HHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999621136766665 444454444444556688888899888987766666677789
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCCeEEeccCChhhHHHHHHH
Q 012238 379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADA 458 (467)
Q Consensus 379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~ggRis~~~~~~~~i~~~~~~ 458 (467)
+++++++++++.+.+.|+ +++.+..+++..+.+|+|+|++++.+++.++++++||.+.+|.||+++..+++++++++++
T Consensus 310 ~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~~~ 388 (394)
T 2ay1_A 310 AVRSGMLRLREQLAGELR-DLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARA 388 (394)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCCCeeEEcCCceEEEeeCCCHHHHHHHHHhCCEEecCCCeEEeecCCHhhHHHHHHH
Confidence 999999999999999998 7752223677778889999999887778888877899999988999986688999999999
Q ss_pred HHHH
Q 012238 459 IIDS 462 (467)
Q Consensus 459 l~~~ 462 (467)
|+++
T Consensus 389 l~~~ 392 (394)
T 2ay1_A 389 IIEV 392 (394)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9876
No 12
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=6.9e-47 Score=382.96 Aligned_cols=380 Identities=23% Similarity=0.314 Sum_probs=299.3
Q ss_pred CCCCCCCcccchHHHhhcC----CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238 62 VTMAPPDPILGVSEAFKAD----TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE 137 (467)
Q Consensus 62 ~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~ 137 (467)
....++++++.+.+++++. .+.++|||++|.|.|.+..+++++.+.+++.+..... ...|.+..|.+++|+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~ 91 (418)
T 3rq1_A 13 KGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSE-HVGYAPIAGIPDFLCAAEK 91 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHH-HHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccc-cCCCCCCCChHHHHHHHHH
Confidence 3344667787877666532 2347999999999887766666888998887754322 2679899999999999999
Q ss_pred HHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChh
Q 012238 138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE 217 (467)
Q Consensus 138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 217 (467)
++.+.++.. .+++|++ |+||++++.++ +...+.+||+|+++.|+|..|...++..|++++.+|++++ ++++|++
T Consensus 92 ~~~~~~~~~-~~~~i~~--t~g~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~ 165 (418)
T 3rq1_A 92 ECFGNFRPE-GHIRSIA--TAGGTGGIHHL--IHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDE-HNNFNHE 165 (418)
T ss_dssp HHHGGGCCS-SEEEEEE--ESHHHHHHHHH--HHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCT-TSSBCHH
T ss_pred HHhcccCcc-ccccEEE--CCchHHHHHHH--HHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCC-CCCcCHH
Confidence 986654432 1338888 99999999998 4445779999999999999999999999999999998533 4789999
Q ss_pred hHHHHHHcC--CCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238 218 GMIADIKAA--PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQ------EKNHIPFFDVAYQGFASGSLDNDASSVRL 288 (467)
Q Consensus 218 ~l~~~l~~~--~~~~~~i~i~~p-~NPTG~~~~~~~l~~l~~~~~------~~~~~li~Deay~~~~~~~~~~~~~~~~~ 288 (467)
.+++.+++. +..+.++++++| |||||.+++.+++++|+++|+ +||+++|+||+|.++.+++ .....
T Consensus 166 ~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~-----~~~~~ 240 (418)
T 3rq1_A 166 AFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK-----DEVRA 240 (418)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH-----HHHHG
T ss_pred HHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh-----HHHHH
Confidence 999999741 023348888999 999999999999999999999 8999999999999988642 11112
Q ss_pred HHh----cCCe--EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHH
Q 012238 289 FAT----RGME--LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVAN 362 (467)
Q Consensus 289 ~~~----~~~~--~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 362 (467)
+.. ..++ +++++||||.+|++|+|+||++.++.++++++. +...........+.+++.++|.++..
T Consensus 241 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~ 312 (418)
T 3rq1_A 241 FFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADE--------FFEVNKSTSRATWSNICRPAMRTMAN 312 (418)
T ss_dssp GGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHH--------HHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHH--------HHHHHHHHHhhccCCCchHHHHHHHH
Confidence 222 2234 689999999999999999999622238888887 43322222222345688889999999
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCCC-
Q 012238 363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG- 440 (467)
Q Consensus 363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg- 440 (467)
+|++..+.+.|.+++++++++++++++.+.+.|+ ++| +++..+++|+|+|+++ +.+.+.+.++++||.+.||+
T Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~ 387 (418)
T 3rq1_A 313 IVADPAKFKEYEAERNCYYQLIRDRADIFKQEAA-QVG----LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALAN 387 (418)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT----CCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEECSS
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC----CCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEecCCC
Confidence 9998877777888888899999999999999999 876 5778899999999865 44444445667899999986
Q ss_pred --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 --RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 --Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
|||++..+++++++++++|+++++++
T Consensus 388 ~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 388 GIRIAACGIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp EEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 99998668999999999999999875
No 13
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=2.8e-46 Score=379.76 Aligned_cols=371 Identities=13% Similarity=0.123 Sum_probs=285.1
Q ss_pred ccCCCCCCCCcccchHHHhhcCCCC--CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHH
Q 012238 59 FEGVTMAPPDPILGVSEAFKADTDE--KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA 136 (467)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~--~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia 136 (467)
++.+...++++|.++.+.++.+.++ ++|||++|.| +..+..++++.+++++.+.+.......|.+..|.+++|++++
T Consensus 28 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la 106 (427)
T 3dyd_A 28 PSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIA 106 (427)
T ss_dssp CCC----------------CCCCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHH
T ss_pred hhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHH
Confidence 4566777888899998888766544 5699999997 322223348999999999886654578989999999999999
Q ss_pred HHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCCh
Q 012238 137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF 216 (467)
Q Consensus 137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 216 (467)
+++.+. +..+++++|++ |+||++|+.+++ ...+.+||+|+++.|+|..|...++..|++++.++++++.++++|+
T Consensus 107 ~~~~~~-~~~~~~~~v~~--t~g~t~al~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 181 (427)
T 3dyd_A 107 SYYHCP-EAPLEAKDVIL--TSGCSQAIDLCL--AVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDL 181 (427)
T ss_dssp HHHCBT-TBCCCGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred HHHhhc-CCCCChHHEEE--ecCcHHHHHHHH--HHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH
Confidence 998766 77777899998 999999999983 3346799999999999999999999999999999997667788999
Q ss_pred hhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238 217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296 (467)
Q Consensus 217 ~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (467)
+.+++.++ ++++++++++||||||.+++.++|++|+++|+++|+++|+||+|.++.+++. ...++.. .....++
T Consensus 182 ~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~-~~~~~~v 255 (427)
T 3dyd_A 182 KQLEYLID---EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLAT-LSTDVPI 255 (427)
T ss_dssp HHHHSSCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGG-GCSSCCE
T ss_pred HHHHHHhc---cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHH-hCCCCcE
Confidence 99999886 4678889999999999999999999999999999999999999999987542 1112211 2334578
Q ss_pred EEEecCccCcccCCCccceEEEecCC------HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhH
Q 012238 297 LVAQSYSKNLGLYAERIGAMNVVCSS------SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF 370 (467)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 370 (467)
++++||||.|+++|+|+||++ +.+ +++++. +...... ..+++.++|.++..+|++..
T Consensus 256 i~~~S~sK~~~~~G~riG~~~--~~~~~~~~~~~i~~~------------l~~~~~~-~~~~~~~~~~a~~~~L~~~~-- 318 (427)
T 3dyd_A 256 LSCGGLAKRWLVPGWRLGWIL--IHDRRDIFGNEIRDG------------LVKLSQR-ILGPCTIVQGALKSILCRTP-- 318 (427)
T ss_dssp EEEEESTTTSSCGGGCCEEEE--EECSTTSSHHHHHHH------------HHHHHHH-HCCSCHHHHHHHHHHHHHSC--
T ss_pred EEEeeccccCCCcCcceEEEE--ecCcchhhHHHHHHH------------HHHHHhc-cCCCCHHHHHHHHHHHHhcC--
Confidence 999999999999999999996 333 344444 5444332 45678888999888886321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------HHHHHHHHHcccEEEeCCC
Q 012238 371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------KAQSDNMTNKWHVYMTKDG 440 (467)
Q Consensus 371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------~~~~~~ll~~~gI~v~~gg 440 (467)
.+.+++++++++++++.+.+.|+ ++. + +.+..|++|+|+|++++ .++++++++++||++.||+
T Consensus 319 ---~~~~~~~~~~~~~~~~~l~~~L~-~~~--g-~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~ 391 (427)
T 3dyd_A 319 ---GEFYHNTLSFLKSNADLCYGALA-AIP--G-LRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPAT 391 (427)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHH-HST--T-EEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGG
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHh-cCC--C-ceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCc
Confidence 23367788899999999999999 762 1 67778899999987542 4567788877899999872
Q ss_pred --------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 --------RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 --------Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++. +++++++++++|.++++++
T Consensus 392 ~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 392 CFEYPNFIRVVITV-PEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp GGTCTTEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECC-CHHHHHHHHHHHHHHHHHh
Confidence 999985 8999999999999998765
No 14
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=1.5e-46 Score=376.54 Aligned_cols=359 Identities=16% Similarity=0.167 Sum_probs=286.1
Q ss_pred CCCCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhC
Q 012238 64 MAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG 141 (467)
Q Consensus 64 ~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~ 141 (467)
..+++++..+.+..++ ..++++|+|+.|.| ..++ ++.+.+++.+.+..+. ..|.+..|.+++|+++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~~~~ 83 (385)
T 1b5p_A 10 AMKPSATVAVNAKALELRRQGVDLVALTAGEP----DFDT-PEHVKEAARRALAQGK-TKYAPPAGIPELREALAEKFRR 83 (385)
T ss_dssp HCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHhcCCCEEEecCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHH
Confidence 3455556555554432 13457999999987 4443 6788888888775543 6798888999999999999987
Q ss_pred CCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238 142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
.+|..+++++|++ |+|++++++++ +...+.+||+|+++.|+|..|...++..|++++.+++++++++.+|++.+++
T Consensus 84 ~~g~~~~~~~i~~--t~g~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (385)
T 1b5p_A 84 ENGLSVTPEETIV--TVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRR 159 (385)
T ss_dssp TTCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHT
T ss_pred HhCCCCChHHEEE--cCChHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHH
Confidence 7787788899999 99999999998 4445779999999999999999999999999999999644567899999998
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238 222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (467)
Q Consensus 222 ~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (467)
.++ ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ . ..++..+ .. +++++++|
T Consensus 160 ~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~-~~-~~~i~~~s 231 (385)
T 1b5p_A 160 AIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRV-AP-EHTLTVNG 231 (385)
T ss_dssp TCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGT-CT-TTEEEEEE
T ss_pred hcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHc-CC-CCEEEEEe
Confidence 886 467888999999999999999999999999999999999999999988753 1 1122122 22 67999999
Q ss_pred CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238 302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA 381 (467)
Q Consensus 302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~ 381 (467)
|||.+|++|+|+||++ .++++++. +.........+++.+.|.++..+|++.... .+++++.+
T Consensus 232 ~SK~~~~~G~RiG~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~ 293 (385)
T 1b5p_A 232 AAKAFAMTGWRIGYAC---GPKEVIKA------------MASVSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAR 293 (385)
T ss_dssp STTTTTCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHH
T ss_pred chhhcCCcccceEEEE---eCHHHHHH------------HHHHHhhccCCCCHHHHHHHHHHHhCCCcc---hHHHHHHH
Confidence 9999999999999996 67888777 555555555678888998888888652111 23477889
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC------C--eEEeccC
Q 012238 382 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G--RISLAGL 447 (467)
Q Consensus 382 ~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~ 447 (467)
++++++|+.+.+.|+ ++| +.+..+++++|+|+.+ +. ++.+.++ ++||.+.+| + |||++.
T Consensus 294 ~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~- 366 (385)
T 1b5p_A 294 EAYRRRRDLLLEGLT-ALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYAT- 366 (385)
T ss_dssp HHHHHHHHHHHHHHH-HHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCS-
T ss_pred HHHHHHHHHHHHHHH-HCC----CeecCCCeeEEEEEecCCCCCCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecC-
Confidence 999999999999999 776 5777889999998754 34 4466666 679999987 2 999995
Q ss_pred ChhhHHHHHHHHHHHHHh
Q 012238 448 SLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 448 ~~~~i~~~~~~l~~~l~~ 465 (467)
+++++++++++|.+++++
T Consensus 367 ~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 367 SEENLRKALERFARVLGR 384 (385)
T ss_dssp CHHHHHHHHHHGGGGC--
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 889999999999877653
No 15
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=3.8e-46 Score=376.90 Aligned_cols=382 Identities=18% Similarity=0.255 Sum_probs=292.8
Q ss_pred ccCCCCCCCCcccchHHHhhcC----CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHH
Q 012238 59 FEGVTMAPPDPILGVSEAFKAD----TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKV 134 (467)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~a 134 (467)
+.+....++++++.+.+.+++. .+.++|||++|.|.|.++.+.+++.+.+++.+....+ ...|.+..|.+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ 87 (413)
T 3t18_A 9 KRATWNNGPDLAFDINNKANAAIEKYGREAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSH-IASYAPIEGEKDYRKI 87 (413)
T ss_dssp TTTCCCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHH-HHSCCCTTCCHHHHHH
T ss_pred hhcccCCCCChHHHHHHHHhhhhhhccccceEeccccCccCCCCCcCChHHHHHHHHhcCccc-ccCcCCCCCCHHHHHH
Confidence 4556666788888888776532 2347999999999877666666888999887754322 3679888999999999
Q ss_pred HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCC
Q 012238 135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL 214 (467)
Q Consensus 135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 214 (467)
+++++.+..+.. ++++|++ |+||++++.++ +...+.+||+|+++.|+|..|...++..|++++.+|+.++ ++++
T Consensus 88 la~~~~~~~~~~-~~~~i~~--t~g~~~al~~~--~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~ 161 (413)
T 3t18_A 88 VIDTLFGPYKPE-GYISAIA--TPGGTGAIRSA--IFSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTD-DFAF 161 (413)
T ss_dssp HHHHHHGGGCCS-SEEEEEE--ESHHHHHHHHH--HHHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCT-TSSB
T ss_pred HHHHHhcccCcc-ccCcEEE--cCccHHHHHHH--HHHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeeccCC-CCCc
Confidence 999986654432 3458988 99999999998 4445779999999999999999999999999999998533 4789
Q ss_pred ChhhHHHHHHcC-CCCcE-EEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCCeeEEeccCCCCCCCCCCCChhH
Q 012238 215 DFEGMIADIKAA-PGGSF-ILLHGCA-HNPTGIDPTPEQWEKIADVIQ------EKNHIPFFDVAYQGFASGSLDNDASS 285 (467)
Q Consensus 215 d~~~l~~~l~~~-~~~~~-~i~i~~p-~NPTG~~~~~~~l~~l~~~~~------~~~~~li~Deay~~~~~~~~~~~~~~ 285 (467)
|++.+++.+++. .++++ ++++++| |||||.+++.+++++|+++|+ +||++||+||+|.++.+++. ...+
T Consensus 162 d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~--~~~~ 239 (413)
T 3t18_A 162 NIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGD--QQRK 239 (413)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSS--TTTG
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChh--hHHH
Confidence 999999999731 01344 8888999 999999999999999999999 89999999999999987642 1111
Q ss_pred H-HHHHhcCCe--EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHH
Q 012238 286 V-RLFATRGME--LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVAN 362 (467)
Q Consensus 286 ~-~~~~~~~~~--~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 362 (467)
+ .......++ +++++||||.|+++|+|+||++....++++++. +...........+.+++.++|.++..
T Consensus 240 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~ 311 (413)
T 3t18_A 240 FFEKFSNLPRNLFVVVAFSMSKSHTAYGLRSGAAVGISSSKEIIEE--------FEASLAHSARCNWSNGTHAAQNILIE 311 (413)
T ss_dssp GGGGGTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEEESCHHHHHH--------HHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred HHHHHhhcCCCeeEEEEEecCccCCCcCcCcEEEEEecCCHHHHHH--------HHHHHHHhhhccccCCChHHHHHHHH
Confidence 1 111122234 589999999999999999999622228888887 33322221222245678888999888
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCCC-
Q 012238 363 VVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG- 440 (467)
Q Consensus 363 ~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg- 440 (467)
+|++..+.+ |.+++++++++++++++.+.+.|+ ++| +++..+++++|+|+++ +.+.+.+.++++||.+.||+
T Consensus 312 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~ 385 (413)
T 3t18_A 312 LERAENKKI-YEQELVDLRNMLKSRADVFVTAAK-ENK----LTMIPYFGGFFTFIPTDKAFDIVKDLEKENIFTIPSAK 385 (413)
T ss_dssp TTSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HTT----CCCBCCCSSSCEEEECSCHHHHHHHHHHTTEECEECSS
T ss_pred HhcChHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HcC----CCccCCCceEEEEeCCCCHHHHHHHHHhCCEEEecCCC
Confidence 888765444 667788899999999999999999 876 5778899999999865 44444444566799999986
Q ss_pred --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 --RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 --Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++..+++++ +++|.++++++
T Consensus 386 ~iRis~~~~~~~~~---l~~l~~~l~~~ 410 (413)
T 3t18_A 386 GIRVAICGVGEEKI---PKLVQRLAFYT 410 (413)
T ss_dssp EEEECTTTSCGGGH---HHHHHHHHHHH
T ss_pred ceEEEEeeCCHHHH---HHHHHHHHHHH
Confidence 999987677776 77777777653
No 16
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-44 Score=370.33 Aligned_cols=358 Identities=16% Similarity=0.135 Sum_probs=282.6
Q ss_pred CCCCcccchHHHhhc------CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238 65 APPDPILGVSEAFKA------DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138 (467)
Q Consensus 65 ~~~~~i~~~~~~~~~------~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~ 138 (467)
.+++.+..+.+.... ..++++|||+.|.| ..++ ++.+.+++.+.+.......|.+..|.+++|++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 107 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFF----SYSP-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKL 107 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSC----SSCC-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCC----CCCC-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHH
Confidence 445555555544421 14468999999987 3343 788999998887542236798888999999999999
Q ss_pred HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC--------
Q 012238 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-------- 210 (467)
Q Consensus 139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-------- 210 (467)
+....|..+++++|++ |+|+++++.++ +...+.+||+|++++|+|..|...++..|++++.++++++.
T Consensus 108 l~~~~g~~~~~~~v~~--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~ 183 (447)
T 3b46_A 108 YSPIYNTELKAENVTV--TTGANEGILSC--LMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTR 183 (447)
T ss_dssp HTTTTTSCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBC
T ss_pred HHHhcCCCCChhhEEE--eCCHHHHHHHH--HHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCcccccccccc
Confidence 9877777777889999 99999999998 44457799999999999999999999999999999986442
Q ss_pred --CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238 211 --TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288 (467)
Q Consensus 211 --~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 288 (467)
++++|++.+++.++ ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++. ..++..
T Consensus 184 ~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~ 257 (447)
T 3b46_A 184 GEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS---FTRIAT 257 (447)
T ss_dssp STTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCGGG
T ss_pred ccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC---CcCHHH
Confidence 56899999999886 5778888999999999999999999999999999999999999999887631 111111
Q ss_pred H-HhcCCeEEEEecCccCcccCCCccceEEEecC-CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC
Q 012238 289 F-ATRGMELLVAQSYSKNLGLYAERIGAMNVVCS-SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN 366 (467)
Q Consensus 289 ~-~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 366 (467)
+ ....++++++.|+||.++++|||+||++ + ++++++. +.........+++.+.|.++..+|+.
T Consensus 258 ~~~~~~~~~i~i~S~sK~~~~~G~riG~~~---~~~~~l~~~------------l~~~~~~~~~~~~~~~~~a~~~aL~~ 322 (447)
T 3b46_A 258 LSPEIGQLTLTVGSAGKSFAATGWRIGWVL---SLNAELLSY------------AAKAHTRICFASPSPLQEACANSIND 322 (447)
T ss_dssp SCHHHHTTEEEEEEHHHHTTCTTSCCEEEE---CSCHHHHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcEEEEecCchhcCCcchhhEEEE---eCCHHHHHH------------HHHHHhhccCCCChHHHHHHHHHHhC
Confidence 1 1223579999999999999999999996 6 8888877 44433333445677788888777754
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC------------------H--HHHH
Q 012238 367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN------------------K--AQSD 426 (467)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~------------------~--~~~~ 426 (467)
.. +++++++++++++++++++.+.|+ ++| +++..+++|+|+|+.+. . ++++
T Consensus 323 ~~----~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 393 (447)
T 3b46_A 323 AL----KIGYFEKMRQEYINKFKIFTSIFD-ELG----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISH 393 (447)
T ss_dssp HH----HHTHHHHHHHHHHHHHHHHHHHHH-HHT----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHH
T ss_pred Cc----chHHHHHHHHHHHHHHHHHHHHHH-HCC----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHH
Confidence 31 134477899999999999999999 876 56777889999987542 1 4566
Q ss_pred HHHHcccEEEeCC-------------C--eEEeccCChhhHHHHHHHHHHH
Q 012238 427 NMTNKWHVYMTKD-------------G--RISLAGLSLAKCEYLADAIIDS 462 (467)
Q Consensus 427 ~ll~~~gI~v~~g-------------g--Ris~~~~~~~~i~~~~~~l~~~ 462 (467)
++++++||.+.|| + ||+++. +++++++++++|++.
T Consensus 394 ~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~-~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 394 WLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-DDAYLENAVERLKLL 443 (447)
T ss_dssp HHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS-CHHHHHHHHHHGGGG
T ss_pred HHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC-CHHHHHHHHHHHHHH
Confidence 7777789999875 2 999997 899999999999873
No 17
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1.2e-44 Score=366.77 Aligned_cols=371 Identities=15% Similarity=0.105 Sum_probs=294.6
Q ss_pred cccCCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCCCCcchHHHHHHHH
Q 012238 58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTA 136 (467)
Q Consensus 58 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia 136 (467)
.++++...+++.+.++.+... ++++|+|+.|.| .+++ ++.+.+++.+.+..+. ...|.+..|.+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 77 (422)
T 3fvs_A 6 QARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP----DFPP-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILA 77 (422)
T ss_dssp SCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC----SSCC-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHH
T ss_pred HHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC----CCCC-CHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHH
Confidence 345566666776766665544 248999999987 4554 7899999998886532 368988889999999999
Q ss_pred HHHhCCCCccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec-------
Q 012238 137 ELLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD------- 208 (467)
Q Consensus 137 ~~l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~------- 208 (467)
+++...+|..+++ ++|++ |+|+++++.++ +...+.+||+|+++.|+|..|...++..|++++.+++++
T Consensus 78 ~~~~~~~g~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~ 153 (422)
T 3fvs_A 78 SFFGELLGQEIDPLRNVLV--TVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGE 153 (422)
T ss_dssp HHHHHHHTCCCCHHHHEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSS
T ss_pred HHHHHhhCCCCCCCCcEEE--ECChHHHHHHH--HHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccc
Confidence 9998766777777 69999 99999999998 344467999999999999999999999999999999864
Q ss_pred ---CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012238 209 ---PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS 285 (467)
Q Consensus 209 ---~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~ 285 (467)
+.++.+|++.+++.++ ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...+
T Consensus 154 ~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~ 228 (422)
T 3fvs_A 154 LGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHIS 228 (422)
T ss_dssp CCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCC
T ss_pred cccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCC
Confidence 1345689999998886 5788899999999999999999999999999999999999999999887642 1122
Q ss_pred HHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC
Q 012238 286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG 365 (467)
Q Consensus 286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 365 (467)
+..+....++++++.|+||.+|++|+|+||++ .++++++. +.........+++.+.|.++..+|.
T Consensus 229 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~ 293 (422)
T 3fvs_A 229 IASLPGMWERTLTIGSAGKTFSATGWKVGWVL---GPDHIMKH------------LRTVHQNSVFHCPTQSQAAVAESFE 293 (422)
T ss_dssp GGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred hhhcccccCcEEEEecchhccCCccceEEEEE---eCHHHHHH------------HHHHHhhccCCCCcHHHHHHHHHHh
Confidence 22222223578999999999999999999996 78888777 5555444455677888888887775
Q ss_pred ChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCCH------------------HHHH
Q 012238 366 NPALF-DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLNK------------------AQSD 426 (467)
Q Consensus 366 ~~~~~-~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~~------------------~~~~ 426 (467)
+.... ..+.+++++.+++++++++.+.+.|+ ++| +.+..+.+|+|+|+++.. +++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (422)
T 3fvs_A 294 REQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQ-SVG----LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVK 368 (422)
T ss_dssp HHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHH-TTT----CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHHHHHH-HcC----CeecCCCeeeEEEEechhhcccccccccccccccHHHHHH
Confidence 31000 00133467889999999999999999 876 577888999999986522 5577
Q ss_pred HHHHcccEEEeCC-------------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 427 NMTNKWHVYMTKD-------------G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 427 ~ll~~~gI~v~~g-------------g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
++++++||.+.+| + |||++. +++++++++++|+++++++
T Consensus 369 ~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 369 WMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVEL 422 (422)
T ss_dssp HHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhhC
Confidence 7888789999884 2 999998 9999999999999998764
No 18
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=4.4e-43 Score=362.90 Aligned_cols=341 Identities=14% Similarity=0.123 Sum_probs=273.0
Q ss_pred hHHHHHHHHHHHhc--C-CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh-CCCC
Q 012238 103 LDVVKKAENLMLER--G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGA 178 (467)
Q Consensus 103 ~~~v~~a~~~~~~~--~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd 178 (467)
|+.+.++..+.+.. + ....|.+..|.+++|+++++++...+|..+++++|++ |+|+++++.++ +...+ .+||
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~--~~~l~~~~gd 183 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--TDGASPGVHLM--MQLLIRNEKD 183 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--ESSSHHHHHHH--HHHHCCSTTE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--cCCHHHHHHHH--HHHHcCCCCC
Confidence 33444444555543 2 4578999999999999999999877777788999999 99999999998 33345 6999
Q ss_pred EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIA 255 (467)
Q Consensus 179 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~ 255 (467)
+|+++.|+|..|...++..|++++.++++++.++++|++.|++.+++. ..+++++++++||||||.+++.+++++|+
T Consensus 184 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~ 263 (500)
T 3tcm_A 184 GILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIV 263 (500)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHH
Confidence 999999999999999999999999999987667899999999999742 12677888899999999999999999999
Q ss_pred HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH------hcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhh
Q 012238 256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA------TRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAAR 328 (467)
Q Consensus 256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~ 328 (467)
++|++||+++|+||+|+++.++.. ....++..+. ....++++++||||.| |++|+|+||++.+..++++++.
T Consensus 264 ~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 342 (500)
T 3tcm_A 264 KFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQ 342 (500)
T ss_dssp HHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHH
T ss_pred HHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHH
Confidence 999999999999999999988531 1222332222 1223689999999999 8999999999743347888887
Q ss_pred hhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 012238 329 CCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD 404 (467)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~ 404 (467)
+.+... ...+++..+|.++..+++.+ ..++.|.+++++++++++++++.+.+.|+ ++. +
T Consensus 343 ------------l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~~---g 405 (500)
T 3tcm_A 343 ------------IYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFN-KLE---G 405 (500)
T ss_dssp ------------HHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TST---T
T ss_pred ------------HHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC---C
Confidence 444433 35678888999999998743 34556777788999999999999999999 762 2
Q ss_pred cccccCCcceEEecC--CCH--------------H-HHHHHHHcccEEEeCC-------C----eEEeccCChhhHHHHH
Q 012238 405 WSFILRQIGMFSFTG--LNK--------------A-QSDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLA 456 (467)
Q Consensus 405 ~~~~~~~~g~f~~~~--l~~--------------~-~~~~ll~~~gI~v~~g-------g----Ris~~~~~~~~i~~~~ 456 (467)
+++..+++|+|+|++ +.. + ++.++++++||++.|| | ||+++ .+++++++++
T Consensus 406 ~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i 484 (500)
T 3tcm_A 406 ITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVI 484 (500)
T ss_dssp EECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHH
T ss_pred cEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHH
Confidence 788899999999953 322 1 2567888889999976 2 99999 5889999999
Q ss_pred HHHHHHHHhc
Q 012238 457 DAIIDSYHNV 466 (467)
Q Consensus 457 ~~l~~~l~~~ 466 (467)
++|.++++++
T Consensus 485 ~~l~~~~~~~ 494 (500)
T 3tcm_A 485 SRFTVFHEAF 494 (500)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 19
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.8e-43 Score=354.60 Aligned_cols=357 Identities=18% Similarity=0.150 Sum_probs=278.7
Q ss_pred CCCCCCCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHH
Q 012238 61 GVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138 (467)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~ 138 (467)
++...+++++..+.+..++ ..++++|||+.|.+ ..+. ++.+.+++.+.+.... ..|.+..|.+++|++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~ 80 (391)
T 3h14_A 7 SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQP----GTGA-PRGAVEALAKSLETDA-LGYTVALGLPALRQRIARL 80 (391)
T ss_dssp STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSC----SSCS-CHHHHHHHHHHHC-----------CCHHHHHHHHHH
T ss_pred hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCChHHHHHHHHHH
Confidence 4444555555555443331 23468999999987 4554 7889999988876543 7898888999999999999
Q ss_pred HhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG 218 (467)
Q Consensus 139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 218 (467)
+...+|..+++++|++ |+||++++.++ +...+.+||+|+++.|+|..+...++..|++++.++++++.++.+|++.
T Consensus 81 ~~~~~g~~~~~~~v~~--t~g~~~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 156 (391)
T 3h14_A 81 YGEWYGVDLDPGRVVI--TPGSSGGFLLA--FTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPAD 156 (391)
T ss_dssp HHHHHCCCCCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHH
T ss_pred HHHHhCCCCCHHHEEE--ecChHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHH
Confidence 9776666677899999 99999999998 4445679999999999999999999999999999999655567889988
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238 219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (467)
Q Consensus 219 l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (467)
+++. +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.... .....+++++
T Consensus 157 l~~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~------~~~~~~~~i~ 224 (391)
T 3h14_A 157 FAGL------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVT------ALELTDECYV 224 (391)
T ss_dssp HTTS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC------GGGTCSSSEE
T ss_pred HHhc------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcC------hhhcCCCEEE
Confidence 8764 456778889999999999999999999999999999999999999987642111 1123568999
Q ss_pred EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 378 (467)
Q Consensus 299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~ 378 (467)
++|+||.+|++|+|+||++ .++++++. +.........+++.+.|.++..+|.. .+.++
T Consensus 225 ~~s~sK~~g~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~-------~~~~~ 282 (391)
T 3h14_A 225 INSFSKYFSMTGWRVGWMV---VPEDQVRV------------VERIAQNMFICAPHASQVAALAALDC-------DAELQ 282 (391)
T ss_dssp EEESSSTTCCTTSCCEEEE---CCGGGHHH------------HHHHHHHTTCCCCHHHHHHHHHHTTC-------HHHHH
T ss_pred EEechhccCCccceeEEEE---eCHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHhCC-------hHHHH
Confidence 9999999999999999996 77777777 55555555667888888888778873 24477
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC---------C--e
Q 012238 379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD---------G--R 441 (467)
Q Consensus 379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g---------g--R 441 (467)
+.+++++++++.+.+.|+ +++. ..+..+.+++|+|+.+ +. ++.+++++++||.+.+| + |
T Consensus 283 ~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iR 358 (391)
T 3h14_A 283 ANLDVYKANRKLMLERLP-KAGF---TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLR 358 (391)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTC---CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHH-HcCC---CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEE
Confidence 889999999999999999 8764 2345788889988743 33 45677787779999875 1 9
Q ss_pred EEeccCChhhHHHHHHHHHHHHHhc
Q 012238 442 ISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 442 is~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
|+++. +++++++++++|++++++.
T Consensus 359 is~~~-~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 359 FSYAR-ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp EECCS-CHHHHHHHHHHHHHHHHHC
T ss_pred EEecC-CHHHHHHHHHHHHHHHHHh
Confidence 99998 8899999999999998753
No 20
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=2.3e-43 Score=353.54 Aligned_cols=361 Identities=18% Similarity=0.186 Sum_probs=286.4
Q ss_pred CCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238 64 MAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143 (467)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~ 143 (467)
..+++++..+.+..++. ++.|||+.|.+ ..++ ++.+.+++.+.+.... ..|.+..|.+++|+++++++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~~~~ 80 (389)
T 1gd9_A 9 LVSASEIRKLFDIAAGM--KDVISLGIGEP----DFDT-PQHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQN 80 (389)
T ss_dssp HSCCCHHHHHHHHHHTC--SSCEECCCCSC----SSCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred hCChhHHHHHHHHHhhh--cCeEecCCCCC----CCCC-CHHHHHHHHHHHhCCC-CCCCCCCCcHHHHHHHHHHHHHHh
Confidence 34566677777666543 57999999987 3333 7889999988876543 679888899999999999986554
Q ss_pred CcccccCc-eeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238 144 NSVLKEQR-VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 144 ~~~~~~~~-i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
|..+++++ |++ |+||++++.++ +...+.+||+|++++|+|..+...++..|++++.+|++++.++.+|++.+++.
T Consensus 81 g~~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 156 (389)
T 1gd9_A 81 GIEADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKY 156 (389)
T ss_dssp CCCCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHH
T ss_pred CCCCCCCCeEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHh
Confidence 55556788 999 99999999997 33345689999999999999999999999999999986434577999999999
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecC
Q 012238 223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY 302 (467)
Q Consensus 223 l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 302 (467)
++ ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.|+
T Consensus 157 l~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~ 231 (389)
T 1gd9_A 157 VT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGF 231 (389)
T ss_dssp CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEES
T ss_pred cC---cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccCCCCCEEEEecC
Confidence 87 4677888899999999999999999999999999999999999999887531 011121111113578999999
Q ss_pred ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012238 303 SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG 382 (467)
Q Consensus 303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~ 382 (467)
||.++++|+|+||++ .++++++. +.........+++.+.|.++..+|+.... .++++++++
T Consensus 232 sK~~~~~G~r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~ 292 (389)
T 1gd9_A 232 SKTFAMTGWRLGFVA---APSWIIER------------MVKFQMYNATCPVTFIQYAAAKALKDERS----WKAVEEMRK 292 (389)
T ss_dssp TTTTTCGGGCCEEEE---CCHHHHHH------------HHHHHTTTTCSCCHHHHHHHHHHHTCHHH----HHHHHHHHH
T ss_pred hhhcCCcccceEEEE---ECHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHHhCCCc----chHHHHHHH
Confidence 999999999999996 67777777 55554444557788888888888876421 125778899
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC--------C--eEEecc
Q 012238 383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAG 446 (467)
Q Consensus 383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~ 446 (467)
+++++++.+.+.|+ ++| +++..+.+|+|+|+.+ +. ++.+++++++||.+.+| + ||+++.
T Consensus 293 ~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~ 367 (389)
T 1gd9_A 293 EYDRRRKLVWKRLN-EMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT 367 (389)
T ss_dssp HHHHHHHHHHHHHH-HTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS
T ss_pred HHHHHHHHHHHHHH-HcC----CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC
Confidence 99999999999999 776 5677788899988754 33 34666665679999875 2 999998
Q ss_pred CChhhHHHHHHHHHHHHHhc
Q 012238 447 LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 447 ~~~~~i~~~~~~l~~~l~~~ 466 (467)
+++++++++++|.+++++.
T Consensus 368 -~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 368 -AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp -CHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHhc
Confidence 8999999999999998764
No 21
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=4.2e-43 Score=351.51 Aligned_cols=360 Identities=16% Similarity=0.170 Sum_probs=282.0
Q ss_pred CCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238 66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143 (467)
Q Consensus 66 ~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~ 143 (467)
+++++..+.+..++ ..+++.|||+.|.+ ..+. ++.+.+++.+.+..+ ...|.+..|..++|+++++++...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~ 84 (388)
T 1j32_A 11 SPSMTLIIDAKAKAMKAEGIDVCSFSAGEP----DFNT-PKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDN 84 (388)
T ss_dssp CCCSSTTTHHHHHHHHTTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCEEECCCCCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 34445455443332 23457999999987 3443 678899988887554 3679888899999999999987655
Q ss_pred CcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHH
Q 012238 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (467)
Q Consensus 144 ~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l 223 (467)
|..+++++|++ |+|+++++.++ +...+.+||+|++++|+|..+...++..|++++.++.+++.++.+|++.+++.+
T Consensus 85 g~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 160 (388)
T 1j32_A 85 GLCYGADNILV--TNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp CCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred CCCCChhhEEE--cCCHHHHHHHH--HHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhc
Confidence 66666889999 99999999998 344467999999999999999999999999999999854446789999999998
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecC
Q 012238 224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSY 302 (467)
Q Consensus 224 ~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~ 302 (467)
+ ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++... .++..+.. ..++++++.|+
T Consensus 161 ~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~ 235 (388)
T 1j32_A 161 T---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH--LSIGAASPEAYERSVVCSGF 235 (388)
T ss_dssp C---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CCGGGSCHHHHHTEEEEEES
T ss_pred C---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC--CCHHHccccccCCEEEEeec
Confidence 7 467888889999999999999999999999999999999999999988753211 11111111 12468999999
Q ss_pred ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012238 303 SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG 382 (467)
Q Consensus 303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~ 382 (467)
||.++++|+|+||++ .++++++. +.........+++.+.|.++..+|... .+++++.++
T Consensus 236 sK~~~~~G~r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~ 294 (388)
T 1j32_A 236 AKTYAMTGWRVGFLA---GPVPLVKA------------ATKIQGHSTSNVCTFAQYGAIAAYENS------QDCVQEMLA 294 (388)
T ss_dssp TTTTTCTTTCCEEEE---CCHHHHHH------------HHHHHHTTTCSCCHHHHHHHHHHHHSC------SHHHHHHHH
T ss_pred hhccCCcccceEEEE---eCHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHHhCC------cHHHHHHHH
Confidence 999999999999996 77877777 555544445667788888877777532 133667888
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC------C--eEEeccCC
Q 012238 383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD------G--RISLAGLS 448 (467)
Q Consensus 383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~ 448 (467)
+++++++++.+.|+ +++ ++++..+.+++|+|+.+ +. ++.+.+++++||.+.+| + ||+++. +
T Consensus 295 ~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~-~ 369 (388)
T 1j32_A 295 AFAERRRYMLDALN-AMP---GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-D 369 (388)
T ss_dssp HHHHHHHHHHHHHH-TCT---TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-C
T ss_pred HHHHHHHHHHHHHh-hCC---CCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecC-C
Confidence 99999999999998 762 16777888899988744 33 34566666579999886 2 999986 8
Q ss_pred hhhHHHHHHHHHHHHHhc
Q 012238 449 LAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 449 ~~~i~~~~~~l~~~l~~~ 466 (467)
++++++++++|+++++++
T Consensus 370 ~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 370 LDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998865
No 22
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-43 Score=361.63 Aligned_cols=381 Identities=17% Similarity=0.183 Sum_probs=283.2
Q ss_pred CCCCCCCcccchHHHhhcC--CCC-----CcEEecCcccCCCCCCCC---------------------chHHHHHHHHHH
Q 012238 62 VTMAPPDPILGVSEAFKAD--TDE-----KKLNLGVGAYRTEELQPY---------------------VLDVVKKAENLM 113 (467)
Q Consensus 62 ~~~~~~~~i~~~~~~~~~~--~~~-----~~i~l~~G~~~d~~~~p~---------------------~~~~v~~a~~~~ 113 (467)
+.++-.+++...++++.+. ++. ++|++.+|.|... +..+ .|..+.++..+.
T Consensus 35 ~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~-~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~ 113 (498)
T 3ihj_A 35 VEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAM-GQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRI 113 (498)
T ss_dssp EEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHH
T ss_pred hhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccc-cCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHH
Confidence 3444456666666666543 233 8999999988221 2111 133334444555
Q ss_pred Hhc--C-CCCcCCCCcchHHHHHHHHHHHhCCC-CcccccCceeeeecCCchhHHHHHHHHHHHhCCCC----EEEEcCC
Q 012238 114 LER--G-ENKEYLPIEGLAAFNKVTAELLFGAD-NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA----KVLISSP 185 (467)
Q Consensus 114 ~~~--~-~~~~Y~~~~G~~~lr~aia~~l~~~~-~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd----~Vlv~~P 185 (467)
+.. + ....|.+..|.+++|+++++++...+ |..+++++|++ |+|+++++.++ +...+.+|| .|+++.|
T Consensus 114 l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~--t~G~~~ai~~~--~~~l~~~gd~~~d~Vlv~~p 189 (498)
T 3ihj_A 114 LQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYL--TTGASDGISTI--LKILVSGGGKSRTGVMIPIP 189 (498)
T ss_dssp HHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEE--ESSHHHHHHHH--HHHHCCCCGGGSEEEEEEES
T ss_pred HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEE--cCCHHHHHHHH--HHHHcCCCCCCCCEEEEeCC
Confidence 533 1 23679999999999999999998766 47778999999 99999999998 333466765 9999999
Q ss_pred CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 012238 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH 263 (467)
Q Consensus 186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~ 263 (467)
+|+.|...++..|++++.++++++.+|++|++.|++.+++... +++++++++||||||.+++.+++++|+++|++||+
T Consensus 190 ~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~ 269 (498)
T 3ihj_A 190 QYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKL 269 (498)
T ss_dssp CCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred CchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCc
Confidence 9999999999999999999997666889999999999985211 57888888999999999999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCChhHHHHHHh-------cCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238 264 IPFFDVAYQGFASGSLDNDASSVRLFAT-------RGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVI 335 (467)
Q Consensus 264 ~li~Deay~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~ 335 (467)
+||+||+|.++.+++. ....++..+.. ...++++++||||.| |++|+|+||++++.+++++++.
T Consensus 270 ~li~De~y~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~------- 341 (498)
T 3ihj_A 270 FLLADEVYQDNVYSPD-CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQ------- 341 (498)
T ss_dssp EEEEECTTTTCBCCTT-CCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHH-------
T ss_pred EEEEEcCccccccCCC-CCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHH-------
Confidence 9999999999988632 12223333322 224689999999999 8999999999754578888887
Q ss_pred HHHHHHHhhccCccCCCchHHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC
Q 012238 336 QVKSQLKRLARPMYSNPPVHGARIVANVVGNP----ALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ 411 (467)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~ 411 (467)
+..... .+.+++.++|.++..+++++ .....|.++++.++++++++++++.+.|+ ++. + +++.+++
T Consensus 342 -----l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~~--g-~~~~~p~ 411 (498)
T 3ihj_A 342 -----LVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN-QVP--G-IHCNPLQ 411 (498)
T ss_dssp -----HHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TST--T-EECCCCC
T ss_pred -----HHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--C-cEecCCC
Confidence 444433 35677888999998888752 23445566678899999999999999999 762 2 7888999
Q ss_pred cceEEecCC---------------CHH-H-HHHHHHcccEEEeCC-------C----eEEeccCChhhHHHHHHHHHHHH
Q 012238 412 IGMFSFTGL---------------NKA-Q-SDNMTNKWHVYMTKD-------G----RISLAGLSLAKCEYLADAIIDSY 463 (467)
Q Consensus 412 ~g~f~~~~l---------------~~~-~-~~~ll~~~gI~v~~g-------g----Ris~~~~~~~~i~~~~~~l~~~l 463 (467)
+|+|+|+.+ +.+ + +.++++++||.+.|| | ||+|+. +++++++++++|.+++
T Consensus 412 gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~-~~e~l~~~i~~L~~~~ 490 (498)
T 3ihj_A 412 GAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP-PVEKLKTVLQKVKDFH 490 (498)
T ss_dssp BSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHH
Confidence 999999632 222 2 577888889999885 2 999974 8899999999999988
Q ss_pred Hhc
Q 012238 464 HNV 466 (467)
Q Consensus 464 ~~~ 466 (467)
+++
T Consensus 491 ~~~ 493 (498)
T 3ihj_A 491 INF 493 (498)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 23
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=3.6e-43 Score=352.80 Aligned_cols=339 Identities=14% Similarity=0.147 Sum_probs=275.5
Q ss_pred CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcc-cccC-ceeeeec
Q 012238 80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQ-RVATVQG 157 (467)
Q Consensus 80 ~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~~~-~i~~~~t 157 (467)
+.++++|||+.|.+ ..+. ++.+.+++.+.+.. ...|.+..|.+++|+++++++...+|.. ++++ +|++ |
T Consensus 27 ~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~--t 97 (396)
T 3jtx_A 27 PEGMEAVPLHIGEP----KHPT-PKVITDALTASLHE--LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILP--V 97 (396)
T ss_dssp CTTCCCEECSCCSC----CSCC-CHHHHHHHHHTGGG--GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEE--E
T ss_pred ccCCCeEEeCCcCC----CCCC-CHHHHHHHHHHhhh--ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEE--c
Confidence 34568999999987 4554 78899999887753 3779888899999999999997766665 6788 9999 9
Q ss_pred CCchhHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238 158 LSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI 232 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 232 (467)
+|+++++.++ +...+.+| |+|+++.|+|..+...++..|++++.+++ +++++.+|++.+++.++ +++++
T Consensus 98 ~g~~~al~~~--~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~~l~~~~~---~~~~~ 171 (396)
T 3jtx_A 98 LGSREALFSF--VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWRSISEEVW---KRTKL 171 (396)
T ss_dssp SSHHHHHHHH--HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGGGSCHHHH---HTEEE
T ss_pred CCcHHHHHHH--HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHHHHHHhhc---cCcEE
Confidence 9999999998 44446686 79999999999999999999999999998 45677889999999998 47788
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH---HhcCCeEEEEecCccCcccC
Q 012238 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF---ATRGMELLVAQSYSKNLGLY 309 (467)
Q Consensus 233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~S~SK~~~~~ 309 (467)
+++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ......... ....++++++.||||.|+++
T Consensus 172 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 250 (396)
T 3jtx_A 172 VFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP 250 (396)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG
T ss_pred EEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcccccCcEEEEeccccccCCc
Confidence 88899999999999999999999999999999999999999987641 111111111 11256899999999999999
Q ss_pred CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238 310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ 389 (467)
Q Consensus 310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~ 389 (467)
|+|+||++ +++++++. +.........+++.+.|.++..+|.+. +++++.+++++++++
T Consensus 251 G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~ 308 (396)
T 3jtx_A 251 GLRSGFVA---GDAELLKN------------FLLYRTYHGSAMSIPVQRASIAAWDDE-------QHVIDNRRLYQEKFE 308 (396)
T ss_dssp GGCCEEEE---ECHHHHHH------------HHHHHHHHTCCCCHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHH
T ss_pred ccceEEEE---eCHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHH
Confidence 99999995 78888877 544444445577888888888888653 336788899999999
Q ss_pred HHHHHhhhccCCCCCcccccCCcceEEecCCC----HHHHHHHHHcccEEEeCC--------------C--eEEeccCCh
Q 012238 390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD--------------G--RISLAGLSL 449 (467)
Q Consensus 390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g--------------g--Ris~~~~~~ 449 (467)
.+.+.|+ +. +.+..+.+|+|+|+.+. .++++++++++||.+.|| + ||+++. ++
T Consensus 309 ~l~~~l~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~ 381 (396)
T 3jtx_A 309 RVIPILQ-QV-----FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DV 381 (396)
T ss_dssp HHHHHHT-TT-----SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CH
T ss_pred HHHHHHH-hc-----CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CH
Confidence 9999998 64 24567888999998664 456777877789999774 2 999988 89
Q ss_pred hhHHHHHHHHHHHH
Q 012238 450 AKCEYLADAIIDSY 463 (467)
Q Consensus 450 ~~i~~~~~~l~~~l 463 (467)
+++++++++|++++
T Consensus 382 ~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 382 ATCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 24
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=5.2e-44 Score=360.60 Aligned_cols=360 Identities=13% Similarity=0.078 Sum_probs=283.6
Q ss_pred CCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238 64 MAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143 (467)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~ 143 (467)
..+++.+..+.+. ..++++|+|+.|.+ .+++ ++.+.+++.+.+.......|.+..|.+++|+++++++...+
T Consensus 7 ~~~~~~~~~~~~~---~~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~ 78 (410)
T 3e2y_A 7 GLDSNVWVEFTKL---AADPSVVNLGQGFP----DISP-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIY 78 (410)
T ss_dssp TCCCCHHHHTTTT---TTSTTSEECSSCCC----CSCC-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHH---hcCCCeEEecCCCC----CCCC-CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHh
Confidence 3344444443332 23458999999987 5554 78999999988865444689888899999999999998766
Q ss_pred Cccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec---------CCCCC
Q 012238 144 NSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD---------PKTVG 213 (467)
Q Consensus 144 ~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~---------~~~~~ 213 (467)
+..+++ ++|++ |+|+++++.++ +...+.+||+|+++.|+|..|...++..|.+++.+++.. +.++.
T Consensus 79 ~~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 154 (410)
T 3e2y_A 79 QRQIDPNEEILV--AVGAYGSLFNS--IQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWT 154 (410)
T ss_dssp TSCCCTTTSEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEE
T ss_pred CCCCCCCCCEEE--eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCc
Confidence 766777 79999 99999999998 444567999999999999999999999999999998862 23556
Q ss_pred CChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238 214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293 (467)
Q Consensus 214 ~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (467)
+|++.+++.++ ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....
T Consensus 155 ~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~ 229 (410)
T 3e2y_A 155 FDPRELESKFS---SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGMW 229 (410)
T ss_dssp CCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTCG
T ss_pred CCHHHHHhhcC---CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCcc
Confidence 89999998886 5788889999999999999999999999999999999999999999987542 111222222233
Q ss_pred CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChh-hHHH
Q 012238 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFDE 372 (467)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~ 372 (467)
++++++.||||.+|++|+|+||++ .++++++. +.........+++.+.|.++..+|.+.. ....
T Consensus 230 ~~~i~~~S~sK~~g~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 294 (410)
T 3e2y_A 230 ERTITIGSAGKTFSVTGWKLGWSI---GPAHLIKH------------LQTVQQNSFYTCATPLQAALAEAFWIDIKRMDD 294 (410)
T ss_dssp GGEEEEEEHHHHSSCGGGCCEEEE---CCHHHHHH------------HHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS
T ss_pred CeEEEEecchhhcCCCCceEEEEE---ECHHHHHH------------HHHHHHhhccCCChHHHHHHHHHHHhhhccccc
Confidence 688999999999999999999996 78888777 5555444455678888888887775310 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------------HHHHHHHHHcccEEE
Q 012238 373 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------------KAQSDNMTNKWHVYM 436 (467)
Q Consensus 373 ~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------------~~~~~~ll~~~gI~v 436 (467)
+.+++++++++++++++.+.+.|+ ++| +.+..+++|+|+|+++. .+++.++++++||.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 369 (410)
T 3e2y_A 295 PECYFNSLPKELEVKRDRMVRLLN-SVG----LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTA 369 (410)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHH-TTT----CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HCC----CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEE
Confidence 133467888999999999999999 876 57788899999987542 166778888889999
Q ss_pred eCC-------------C--eEEeccCChhhHHHHHHHHHH
Q 012238 437 TKD-------------G--RISLAGLSLAKCEYLADAIID 461 (467)
Q Consensus 437 ~~g-------------g--Ris~~~~~~~~i~~~~~~l~~ 461 (467)
.|| + |||++. +++++++++++|++
T Consensus 370 ~~g~~f~~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 370 IPVSAFCDSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA 408 (410)
T ss_dssp EEGGGGSCTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred eCchhhCCCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence 875 2 999998 99999999999875
No 25
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.3e-43 Score=358.35 Aligned_cols=344 Identities=13% Similarity=0.145 Sum_probs=265.7
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCCc
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSG 160 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~gg 160 (467)
+.++|||+.|.+ ..+ .++.+.+++.+.+.......|.+..|..++|+++++++...+|..+++ ++|++ |+|+
T Consensus 36 g~~~idl~~g~~----~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~--t~g~ 108 (412)
T 2x5d_A 36 GEDIIDLSMGNP----DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIV--TIGS 108 (412)
T ss_dssp TCCCEECSSCCC----CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESCH
T ss_pred CCCEEecCCCCC----CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEE--cCCh
Confidence 458999999987 333 378899998887754323679888899999999999986544555567 69999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (467)
Q Consensus 161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N 240 (467)
++++.++ +...+.+||+|+++.|+|..+...++..|++++.++++++.++.+|++.+++.++ ++++++++++|||
T Consensus 109 ~~a~~~~--~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~v~l~~p~n 183 (412)
T 2x5d_A 109 KEGLAHL--MLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESI---PKPRMMILGFPSN 183 (412)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE---SCCSEEEEESSCT
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc---cCceEEEECCCCC
Confidence 9999998 3344679999999999999999999999999999998533244578899988886 4566777899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (467)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.|+||.+|++|+|+||++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--- 258 (412)
T 2x5d_A 184 PTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMV--- 258 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEE---
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccCccCcEEEEecCccccCCcccceEEEE---
Confidence 999999999999999999999999999999999987421 111221221113578999999999999999999996
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 400 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g 400 (467)
.++++++. +.........+++.+.|.++..+|+.. .+++++.+++++++++.+.+.|+ ++|
T Consensus 259 ~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g 319 (412)
T 2x5d_A 259 GNPELVSA------------LARIKSYHDYGTFTPLQVAAIAALEGD------QQCVRDIARQYQQRRDVLVKGLR-EAG 319 (412)
T ss_dssp ECHHHHHH------------HHHHHHHHCCCCCHHHHHHHHHHHHSC------SHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred cCHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHH-HCC
Confidence 67888777 444333334567788888888888653 12367888999999999999999 776
Q ss_pred CCCCcccccCCcceEEecCC-------CH-HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238 401 SGKDWSFILRQIGMFSFTGL-------NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS 462 (467)
Q Consensus 401 ~~~~~~~~~~~~g~f~~~~l-------~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~ 462 (467)
+.+..+++|+|+|+.+ +. ++++++++++||.+.+| + ||+++. +++++++++++|.++
T Consensus 320 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 320 ----WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAM 394 (412)
T ss_dssp ----CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred ----CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 5677788899988754 23 34666767679999875 2 999998 899999999999999
Q ss_pred HHhc
Q 012238 463 YHNV 466 (467)
Q Consensus 463 l~~~ 466 (467)
++++
T Consensus 395 l~~~ 398 (412)
T 2x5d_A 395 FRAD 398 (412)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8754
No 26
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=9e-43 Score=355.85 Aligned_cols=360 Identities=13% Similarity=0.150 Sum_probs=279.1
Q ss_pred CCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCC
Q 012238 65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGA 142 (467)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~ 142 (467)
.+++++.++.+... .+++|||+.|.| +.+.+ +++.+.+++.+.+... ....|.+..|.++||+++++++...
T Consensus 61 ~~~s~~~~~~~~~~---~~~~i~l~~g~p-~~~~~--p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~ 134 (448)
T 3aow_A 61 MRASEVRELLKLVE---TSDIISLAGGLP-NPKTF--PKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKR 134 (448)
T ss_dssp CCCCHHHHHHHHHH---TSSSEECCCCCC-CGGGS--CHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhcc---CCCcEeCCCCCC-CchhC--CHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence 34555555554433 357999999988 22222 3778888888877542 1257988899999999999998544
Q ss_pred CCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238 143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 143 ~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
+|.. ++++|++ |+|+++++.++ +...+.+||+|+++.|+|..+...++..|++++.+|+++ + ++|++.|++.
T Consensus 135 ~g~~-~~~~v~~--t~G~~~al~~~--~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~--g~d~~~L~~~ 206 (448)
T 3aow_A 135 YGIS-QDNDIMI--TSGSQQALDLI--GRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-E--GMKVEILEEK 206 (448)
T ss_dssp HCCC-TTSEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T--EECHHHHHHH
T ss_pred cCcC-ChhhEEE--eCcHHHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-C--CCCHHHHHHH
Confidence 4554 5789999 99999999998 333467999999999999999999999999999999853 2 4999999999
Q ss_pred HH----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238 223 IK----AAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297 (467)
Q Consensus 223 l~----~~~~~~~~i-~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (467)
++ +. .+++++ ++++||||||.+++.+++++|+++|++||++||+||+|.++.+++. ...++..+ +..++++
T Consensus 207 l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~--~~~~~~~~-~~~~~vi 282 (448)
T 3aow_A 207 LKELKSQG-KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN--PEKKIKAL-DNEGRVI 282 (448)
T ss_dssp HHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC--CCCCTGGG-CTTSCEE
T ss_pred HhhhhccC-CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHhc-CCCCCEE
Confidence 87 32 356665 6899999999999999999999999999999999999999987531 11112111 2345799
Q ss_pred EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
++.||||.++ +|+|+||++ .++++++. +.........+++.+.|.++..+|++.. |.+++
T Consensus 283 ~~~S~SK~~~-~GlriG~v~---~~~~l~~~------------l~~~~~~~~~~~~~~~q~a~~~~L~~~~----~~~~~ 342 (448)
T 3aow_A 283 YLGTFSKILA-PGFRIGWMV---GDPGIIRK------------MEIAKQSTDLCTNVFGQVVAWRYVDGGY----LEKHI 342 (448)
T ss_dssp EEEESTTTTC-GGGCCEEEE---ECHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHHTTH----HHHHH
T ss_pred EEccchhhcc-ccccEEEEE---eCHHHHHH------------HHHHHHHhcCCCCHHHHHHHHHHHHhCC----HHHHH
Confidence 9999999999 999999996 67888877 4443333344668888999888887642 34568
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCC----------C--
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G-- 440 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g-- 440 (467)
++++++++++++.+.+.|+ +. +|..+.+..|.+|+|+|+.+ +. +++++++++ ||.+.|| +
T Consensus 343 ~~~~~~~~~~~~~l~~~L~-~~-~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~i 419 (448)
T 3aow_A 343 PEIRKFYKPRRDAMLEALE-EF-MPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTM 419 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HH-CCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHH-Hh-CCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEE
Confidence 8899999999999999998 64 12125677788999999865 33 456677765 9999875 2
Q ss_pred eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 441 RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 441 Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
||+++..+++++++++++|.+++++
T Consensus 420 Rls~~~~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 420 RLNFTYVDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp EEECSSSCTHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999876789999999999999875
No 27
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=4.2e-43 Score=352.68 Aligned_cols=341 Identities=16% Similarity=0.213 Sum_probs=270.5
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (467)
++++|||+.|.+ ..++ ++.+.+++.+.+.... ...|.+..|.+++|+++++++...+|..+++++|++ |+
T Consensus 34 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~ 106 (398)
T 3ele_A 34 KENVYDFSIGNP----SIPA-PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TM 106 (398)
T ss_dssp GGGCEECCSCCC----CSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ES
T ss_pred CCCeEEeecCCC----CCCC-CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--cc
Confidence 357999999976 4443 7889999988875431 367988899999999999999776676677899999 99
Q ss_pred CchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238 159 SGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237 (467)
Q Consensus 159 ggt~al~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~ 237 (467)
|+++++.++ +...+.+| |+|+++.|+|..|...++..|++++.+|++ ++++++|++.+++.++ ++++++++++
T Consensus 107 g~~~al~~~--~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~~~~ 180 (398)
T 3ele_A 107 GAAASLSIC--FRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPAD-TEHFQIDFDALEERIN---AHTRGVIINS 180 (398)
T ss_dssp SHHHHHHHH--HHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCC-TTTSSCCHHHHHHTCC---TTEEEEEECS
T ss_pred CHHHHHHHH--HHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhC---cCCCEEEEcC
Confidence 999999998 44446799 999999999999999999999999999985 3468899999999887 5788999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh------cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238 238 AHNPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE 311 (467)
Q Consensus 238 p~NPTG~~~~~~~l~~l~~~~~~------~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (467)
||||||.+++.+++++|+++|++ ||+++|+||+|.++.+++.... ......+++++++|+||.++++|+
T Consensus 181 p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~-----~~~~~~~~~i~~~s~sK~~~~~G~ 255 (398)
T 3ele_A 181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP-----FVTKYYDNTLVCYSYSKSLSLPGE 255 (398)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC-----CGGGTCSSEEEEEESTTTSSCTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC-----ChHhhcCCeEEEEehhhcCCCccc
Confidence 99999999999999999999999 9999999999999987531111 122345689999999999999999
Q ss_pred ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012238 312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQK 390 (467)
Q Consensus 312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~ 390 (467)
|+||++ .++++++. ..+...+...... .+.+++.+.|.++..++.+.. .++++++++++
T Consensus 256 r~G~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~~~~~~~~~~~ 315 (398)
T 3ele_A 256 RIGYVL---VPDEVYDK------AELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----------DINAYKENRDL 315 (398)
T ss_dssp CCEEEE---CCTTSTTH------HHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----------CHHHHHHHHHH
T ss_pred eeEEEE---EcchhhhH------HHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----------HHHHHHHHHHH
Confidence 999996 55553321 0022223322222 245677788888877776542 34677888999
Q ss_pred HHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHH
Q 012238 391 LFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAI 459 (467)
Q Consensus 391 l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l 459 (467)
+.+.|+ ++| +.+..+.+++|+|+.+ +.+.+.+.+.++||.+.+| + ||+++. +++++++++++|
T Consensus 316 l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~-~~e~i~~~l~~l 389 (398)
T 3ele_A 316 LYEGLT-RIG----YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCV-DREMIKHSMPAF 389 (398)
T ss_dssp HHHHHH-HHT----CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCS-CHHHHHHHHHHH
T ss_pred HHHHHH-HcC----CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHH
Confidence 999998 776 5778889999999865 3444444556679999987 2 999985 899999999999
Q ss_pred HHHHHhc
Q 012238 460 IDSYHNV 466 (467)
Q Consensus 460 ~~~l~~~ 466 (467)
.++++++
T Consensus 390 ~~~l~~~ 396 (398)
T 3ele_A 390 EKIYKKY 396 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 28
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.8e-42 Score=347.31 Aligned_cols=356 Identities=17% Similarity=0.186 Sum_probs=282.2
Q ss_pred CCCCCcccchHHHhhcC--CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhC
Q 012238 64 MAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG 141 (467)
Q Consensus 64 ~~~~~~i~~~~~~~~~~--~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~ 141 (467)
..+++.+.++.+...+. .+++.|||+.|.+ ..+. ++.+.+++.+.+.... ..|.+..|.+++|+++++++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~ 93 (389)
T 1o4s_A 20 EIPISKTMELDAKAKALIKKGEDVINLTAGEP----DFPT-PEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIGE 93 (389)
T ss_dssp HSCCCSSHHHHHHHHHHHHTTCCCEECCCSSC----SSCC-CHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHhcCCCEEEccCCCC----CCCC-CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHH
Confidence 34555666665554321 3458999999987 3443 7889999988876543 5788778999999999999865
Q ss_pred CCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238 142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
.+|..+++++|++ |+|+++++.++ +...+.+||+|++++|+|..+...++..|++++.+|.++++++.+|++.+++
T Consensus 94 ~~g~~~~~~~v~~--~~g~t~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 169 (389)
T 1o4s_A 94 RYKKDISPDQVVV--TNGAKQALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEG 169 (389)
T ss_dssp HHTCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHH
T ss_pred HhCCCCCHHHEEE--ecCHHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHH
Confidence 5555566889999 99999999998 3334679999999999999999999999999999998543467899999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238 222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (467)
Q Consensus 222 ~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (467)
.++ ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ...++..+....++++++.|
T Consensus 170 ~l~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g---~~~~~~~~~~~~~~~i~~~s 243 (389)
T 1o4s_A 170 LLV---GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD---EFTSILDVSEGFDRIVYING 243 (389)
T ss_dssp TCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS---CCCCHHHHCSSSTTEEEEEE
T ss_pred hcc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC---CCCCHhhcCCCCCcEEEEee
Confidence 886 467888889999999999999999999999999999999999999988753 11123233212467999999
Q ss_pred CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238 302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA 381 (467)
Q Consensus 302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~ 381 (467)
+||.+|++|+|+||++ .++++++. +.........+++.+.|.++..+|.+. +++.+
T Consensus 244 ~sK~~~~~G~r~G~l~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~ 299 (389)
T 1o4s_A 244 FSKSHSMTGWRVGYLI---SSEKVATA------------VSKIQSHTTSCINTVAQYAALKALEVD---------NSYMV 299 (389)
T ss_dssp STTTTTCGGGCCEEEE---CCHHHHHH------------HHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHH
T ss_pred chhhcCCcccceEEEE---eCHHHHHH------------HHHHhhhcccCCCHHHHHHHHHHHhcc---------HHHHH
Confidence 9999999999999996 67877776 444443334567778888888888764 34677
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--CH-HHHHHHHHcccEEEeCC------C--eEEeccCChh
Q 012238 382 GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLA 450 (467)
Q Consensus 382 ~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~ 450 (467)
++++++++.+.+.|+ ++| +++..+.+++|+|+.+ +. ++.+++++++||.+.+| + ||+++. +++
T Consensus 300 ~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~ 373 (389)
T 1o4s_A 300 QTFKERKNFVVERLK-KMG----VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIE 373 (389)
T ss_dssp HHHHHHHHHHHHHHH-HTT----CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHH
T ss_pred HHHHHHHHHHHHHHH-hcC----CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHH
Confidence 888899999999998 776 5666788899988765 34 45666765679999886 2 999997 899
Q ss_pred hHHHHHHHHHHHHHh
Q 012238 451 KCEYLADAIIDSYHN 465 (467)
Q Consensus 451 ~i~~~~~~l~~~l~~ 465 (467)
++++++++|.+++++
T Consensus 374 ~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 374 RLTEALDRIEDFLNS 388 (389)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 29
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=3.4e-43 Score=354.20 Aligned_cols=365 Identities=16% Similarity=0.161 Sum_probs=276.4
Q ss_pred CCCCCCcccchHHHhhcCCC-----CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238 63 TMAPPDPILGVSEAFKADTD-----EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE 137 (467)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~-----~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~ 137 (467)
+..|++++....+.+..+.. ++.|||+.|.| +++++ ++.+++++.+.+.......|.+..|..++++++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~g~~---~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~ 89 (407)
T 3nra_A 14 DNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDV---DAHEP-TPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAP 89 (407)
T ss_dssp -------------CCTTTCCSCCCCSCCEETTSCCT---TTSCC-CTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHH
T ss_pred CCCccHHHHHHhhhhHHHhhcCCCCCceeeecCcCC---CCCCC-cHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHH
Confidence 44455555444442222211 24799999987 13343 78889998888764333578888999999999999
Q ss_pred HHhCCCCccccc-CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec----CCCC
Q 012238 138 LLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD----PKTV 212 (467)
Q Consensus 138 ~l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~----~~~~ 212 (467)
++....|..+++ ++|++ |+||++++.++ +...+.+||+|+++.|+|..+...++..|++++.+++.. ++++
T Consensus 90 ~l~~~~g~~~~~~~~i~~--~~g~~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 165 (407)
T 3nra_A 90 RLAAFTGAPVDARDGLII--TPGTQGALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRA 165 (407)
T ss_dssp HHHHHHTSCCCTTTSEEE--ESHHHHHHHHH--HHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSC
T ss_pred HHHHHhCCCCCCCCcEEE--eCCcHHHHHHH--HHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCC
Confidence 987666666655 69999 99999999997 333466999999999999999999999999999999831 3567
Q ss_pred CCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-h
Q 012238 213 GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-T 291 (467)
Q Consensus 213 ~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~ 291 (467)
++|++.+++.+++ +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+. .
T Consensus 166 ~~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~~ 240 (407)
T 3nra_A 166 GLDLTGLEEAFKA---GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAAV 240 (407)
T ss_dssp CBCHHHHHHHHHT---TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTTS
T ss_pred CcCHHHHHHHHhh---CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCcc
Confidence 8999999999983 667888899999999999999999999999999999999999999887642 122221221 2
Q ss_pred cCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHH
Q 012238 292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFD 371 (467)
Q Consensus 292 ~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 371 (467)
..++++++.||||.+|++|+|+||++ .++++++. +.........+++.+.+.++..+|.+..
T Consensus 241 ~~~~~i~~~s~sK~~g~~G~r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~--- 302 (407)
T 3nra_A 241 DAENVVTIMGPSKTESLSGYRLGVAF---GSRAIIAR------------MEKLQAIVSLRAAGYSQAVLRGWFDEAP--- 302 (407)
T ss_dssp CGGGEEEEECSSSTTCCGGGCCEEEE---ECHHHHHH------------HHHHHHHHTSSSCHHHHGGGGGTTCCCT---
T ss_pred cCCcEEEEeCcccccCCCeeeEEEEE---cCHHHHHH------------HHHHHhhhccCCChHHHHHHHHHHhccc---
Confidence 24578999999999999999999995 67888777 5544444455677788888777776431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCCC-----
Q 012238 372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----- 440 (467)
Q Consensus 372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----- 440 (467)
+.+++.+++++++++.+.+.|+ +++ .+.+..+.+++|+|+.+ +. ++.+.+++++||.+.+|.
T Consensus 303 ---~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 375 (407)
T 3nra_A 303 ---GWMEDRIARHQAIRDELLHVLR-GCE---GVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPH 375 (407)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHH-TST---TCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTT
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHh-cCC---CceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCC
Confidence 2256777888899999999998 762 16777888889999854 23 456667677799998851
Q ss_pred -----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 -----RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 -----Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++. +++++++++++|.++++++
T Consensus 376 ~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 376 TADSVRLNFSQ-DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp CTTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence 999998 8999999999999998865
No 30
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=4.2e-43 Score=353.74 Aligned_cols=343 Identities=16% Similarity=0.114 Sum_probs=272.2
Q ss_pred CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-CceeeeecCC
Q 012238 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLS 159 (467)
Q Consensus 81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~g 159 (467)
.+.++|||+.|.+ ..+. ++.+.+++.+.+.......|.+..|.+++|+++++++...+|..+++ ++|++ |+|
T Consensus 45 ~g~~~idl~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~--t~G 117 (404)
T 2o1b_A 45 GPLPLINMAVGIP----DGPT-PQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCI--LYG 117 (404)
T ss_dssp CSSCCEECCCCSC----SSCC-CHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--ESS
T ss_pred CCCCEEecCCcCC----CCCC-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEE--cCC
Confidence 3456899999987 3333 67899998887743223568777899999999999986544555555 78999 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
+++++.++ +...+.+||+|+++.|+|..+...++..|++++.++.++ +++.+|++.+++.++ ++++++++++|+
T Consensus 118 ~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~---~~~~~v~l~~p~ 191 (404)
T 2o1b_A 118 TKNGLVAV--PTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQII---DKTKLIYLTYPN 191 (404)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHH---HHEEEEEECSSC
T ss_pred cHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhc---cCceEEEEcCCC
Confidence 99999998 344467999999999999999999999999999999853 456789999999987 467888889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
||||.+++.+++++|+++|+++|++||+||+|.++.+++...+.. .+....++++++.||||.+|++|+|+||++
T Consensus 192 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-- 266 (404)
T 2o1b_A 192 NPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSIL---ASENGKDVAIEIYSLSKGYNMSGFRVGFAV-- 266 (404)
T ss_dssp TTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGG---GSTTHHHHEEEEEESTTTTTCGGGCCEEEE--
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh---hcCCCCCCEEEEEecchhccCchhheEeEe--
Confidence 999999999999999999999999999999999988753111111 111112468999999999999999999995
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
.++++++. +.........+++.+.|.++..+|++. .+.+++.+++++++++.+.+.|+ ++
T Consensus 267 -~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~ 326 (404)
T 2o1b_A 267 -GNKDMIQA------------LKKYQTHTNAGMFGALQDAAIYALNHY------DDFLEEQSNVFKTRRDRFEAMLA-KA 326 (404)
T ss_dssp -ECHHHHHH------------HHHHHHHHCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HT
T ss_pred -cCHHHHHH------------HHHHHhhccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 67888777 444433334567788888888777542 23467888999999999999999 77
Q ss_pred CCCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHH
Q 012238 400 KSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYH 464 (467)
Q Consensus 400 g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~ 464 (467)
| +++..+++|+|+|+.+ + .++++++++++||.+.+| + ||+++. +++++++++++|.++++
T Consensus 327 g----~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 327 D----LPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp T----CCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGG
T ss_pred C----CeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHH
Confidence 6 5677788899998754 2 345677776679999886 2 999998 88999999999999887
Q ss_pred hc
Q 012238 465 NV 466 (467)
Q Consensus 465 ~~ 466 (467)
+.
T Consensus 402 ~~ 403 (404)
T 2o1b_A 402 LY 403 (404)
T ss_dssp GG
T ss_pred hh
Confidence 64
No 31
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=5e-42 Score=350.58 Aligned_cols=346 Identities=14% Similarity=0.131 Sum_probs=270.5
Q ss_pred CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc----CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 80 ~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
..++++|||++|.+ +.+. ++.|.+++.+.+.. .....|.+..|.++||+++++++. +|..+++++|++
T Consensus 66 ~~~~~~i~l~~g~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~- 137 (449)
T 3qgu_A 66 NPDAKIISLGIGDT----TEPL-PKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI- 137 (449)
T ss_dssp CTTCCCEECSSCCC----CCCC-CHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE-
T ss_pred CCCCCEEEeeCCCC----CCCC-CHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE-
Confidence 34568999999976 5554 78888888887752 234689888999999999999987 566777899999
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC----------eEEeeeecCCCCCCChhhHHHHHHc
Q 012238 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP----------WSEYRYYDPKTVGLDFEGMIADIKA 225 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~----------~~~v~~~~~~~~~~d~~~l~~~l~~ 225 (467)
|+|+++++.++ ...+.+||+|++++|+|..|...++..|++ ++.++++++.++..|++.+
T Consensus 138 -t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 207 (449)
T 3qgu_A 138 -SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------ 207 (449)
T ss_dssp -ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC------
T ss_pred -ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc------
Confidence 99999999986 345789999999999999999999999998 9999986554555565432
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN 305 (467)
Q Consensus 226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 305 (467)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.||||.
T Consensus 208 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~ 283 (449)
T 3qgu_A 208 --KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAIETCSFSKY 283 (449)
T ss_dssp --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECSGG
T ss_pred --CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEEEEecchhh
Confidence 3556777789999999999999999999999999999999999999987631 122222222224578999999999
Q ss_pred cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238 306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 385 (467)
Q Consensus 306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~ 385 (467)
+|++|+|+||++ +++++++... ..+...+.......+.+++.++|.++..+|.+.. .+++++++++++
T Consensus 284 ~g~~G~r~G~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~ 351 (449)
T 3qgu_A 284 AGFTGVRLGWTV---VPKALKYANG----EPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG-----LKEMNAMIKFYK 351 (449)
T ss_dssp GTCTTCCCEEEE---CCTTCBCTTS----CBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----HHHHHHHHHHHH
T ss_pred cCCccceeEEEe---cCHHHHhhhh----hhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----HHHHHHHHHHHH
Confidence 999999999996 6666654000 0011113333344456788889999888887532 244778899999
Q ss_pred HHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhh
Q 012238 386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAK 451 (467)
Q Consensus 386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~ 451 (467)
++++++.+.|+ ++| +++..+++++|+|+++ + .++++++++++||++.|| + |||++. ++++
T Consensus 352 ~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~ 425 (449)
T 3qgu_A 352 ENAQILKTTFT-EMG----FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SREN 425 (449)
T ss_dssp HHHHHHHHHHH-HTT----CCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHH
T ss_pred HHHHHHHHHHH-HCC----CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHH
Confidence 99999999999 876 5778888899999865 2 456778888789999986 2 999887 8999
Q ss_pred HHHHHHHHHHHHHh
Q 012238 452 CEYLADAIIDSYHN 465 (467)
Q Consensus 452 i~~~~~~l~~~l~~ 465 (467)
+++++++|++++++
T Consensus 426 i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 426 ILEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 32
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=3.9e-42 Score=342.85 Aligned_cols=339 Identities=14% Similarity=0.110 Sum_probs=276.0
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+++.|||+.|.+ ..+. ++.+.+++.+.+..+. ..|.+ .| .++|+++++++...++..+++++|++ |+|++
T Consensus 22 g~~~idl~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~ 91 (377)
T 3fdb_A 22 GQGVLPLWVAES----DFST-CPAVLQAITDAVQREA-FGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP--IPDVV 91 (377)
T ss_dssp CTTSEECCSSCC----CSCC-CHHHHHHHHHHHHTTC-CSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred CCCeeeecccCC----CCCC-CHHHHHHHHHHHHcCC-CCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE--eCChH
Confidence 458999999976 4544 7889999998886543 67877 77 89999999999866666677899999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++++++ +...+.+||+|+++.|+|..+...++..|++++.+|+++ + +|++.+++.+++ +++++++++||||
T Consensus 92 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~--~d~~~l~~~l~~---~~~~v~i~~p~np 162 (377)
T 3fdb_A 92 RGLYIA--IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATG--G--INLHDVEKGFQA---GARSILLCNPYNP 162 (377)
T ss_dssp HHHHHH--HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT--S--CCHHHHHHHHHT---TCCEEEEESSBTT
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC--C--CCHHHHHHHhcc---CCCEEEEeCCCCC
Confidence 999998 444567999999999999999999999999999999843 2 999999999984 5678889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (467)
||.+++.+++++|+++|++||+++|+||+|.++.+++ +....++..+ ...++++++.|+||.+|++|+|+||++ ++
T Consensus 163 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~-~~~~~~i~~~s~sK~~g~~G~r~G~~~--~~ 238 (377)
T 3fdb_A 163 LGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDG-QHTVAAGVSD-TAASVCITITAPSKAWNIAGLKCAQII--FS 238 (377)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSCH-HHHHHEEEEECSTTTTTCGGGCCEEEE--CC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCC-CCCcccHHHc-cCCCcEEEEEeChHhccCcchhheEEE--eC
Confidence 9999999999999999999999999999999988753 0111122111 123578999999999999999999985 56
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-C
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-K 400 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g 400 (467)
++++++. +.........+++.+++.++..+|.+. .+++++.+++++++++.+.+.|+ +. +
T Consensus 239 ~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~~~ 299 (377)
T 3fdb_A 239 NPSDAEH------------WQQLSPVIKDGASTLGLIAAEAAYRYG------TDFLNQEVAYLKNNHDFLLHEIP-KRIP 299 (377)
T ss_dssp SHHHHHH------------HHHSCHHHHCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHST
T ss_pred CHHHHHH------------HHHHHHhhcCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hhCC
Confidence 7887777 555544445577888888877777542 23467889999999999999998 74 2
Q ss_pred CCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 401 SGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 401 ~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
.+.+..+++++++|+.+ +.++++.+++++||.+.+| + ||+++. +++++++++++|++++++
T Consensus 300 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 300 ---GAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp ---TCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred ---CceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 16788899999988744 4467888888789999986 2 999997 899999999999999876
Q ss_pred c
Q 012238 466 V 466 (467)
Q Consensus 466 ~ 466 (467)
+
T Consensus 376 ~ 376 (377)
T 3fdb_A 376 H 376 (377)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=7e-42 Score=347.14 Aligned_cols=371 Identities=14% Similarity=0.164 Sum_probs=273.6
Q ss_pred CCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHH---------HHHHhcCCCCcCCCCcchHHH
Q 012238 61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAE---------NLMLERGENKEYLPIEGLAAF 131 (467)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~---------~~~~~~~~~~~Y~~~~G~~~l 131 (467)
++...+++++..+.+..... .+++|+|+.|.| |...+|. .....++ ...... ...|.+..|.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p-~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~l 83 (425)
T 2r2n_A 10 ASAARNPSPIRTMTDILSRG-PKSMISLAGGLP-NPNMFPF--KTAVITVENGKTIQFGEEMMKR--ALQYSPSAGIPEL 83 (425)
T ss_dssp HHHTCCCCSGGGHHHHHHHS-CTTCEECCCCCC-CGGGCSE--EEEEEEETTSCCEEECHHHHHH--HTSCCCTTCCHHH
T ss_pred HHhcCCCchHHHHHHHhhcC-CCCeEEcCCcCC-CchhCCH--HHHHHHHhhcccccccccchhh--hcCCCCCCCCHHH
Confidence 34445566777777666543 257999999998 3222221 1000000 000111 1569999999999
Q ss_pred HHHHHHHHhCCCCcccc-------cCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEe
Q 012238 132 NKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY 204 (467)
Q Consensus 132 r~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v 204 (467)
|+++++++...+|...+ +++|++ |+|+++++.++ +...+.+||+|++++|+|..|...++..|++++.+
T Consensus 84 r~~ia~~l~~~~g~~~~~~~~~~~~~~i~~--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v 159 (425)
T 2r2n_A 84 LSWLKQLQIKLHNPPTIHYPPSQGQMDLCV--TSGSQQGLCKV--FEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINV 159 (425)
T ss_dssp HHHHHHHHHHHHCCTTTTSCGGGTCEEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCccccccCCcCcEEE--eCcHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEe
Confidence 99999998665565543 368988 99999999998 44446799999999999999999999999999999
Q ss_pred eeecCCCCCCChhhHHHHHHcCC---------CCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC
Q 012238 205 RYYDPKTVGLDFEGMIADIKAAP---------GGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF 274 (467)
Q Consensus 205 ~~~~~~~~~~d~~~l~~~l~~~~---------~~~~~i-~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~ 274 (467)
++++ .++|++.+++.+++.+ .+++++ ++++||||||.+++.+++++|+++|++||++||+||+|.++
T Consensus 160 ~~~~---~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~ 236 (425)
T 2r2n_A 160 ASDE---SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFL 236 (425)
T ss_dssp CEET---TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred CcCC---CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 9853 2599999999997321 234555 45899999999999999999999999999999999999988
Q ss_pred CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCch
Q 012238 275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPV 354 (467)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 354 (467)
.+++. ...++..+ +..+++++++||||.++ +|+|+||++ .++++++. +.........+++.
T Consensus 237 ~~~g~--~~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~~---~~~~l~~~------------l~~~~~~~~~~~~~ 297 (425)
T 2r2n_A 237 QFNKF--RVPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFLT---GPKPLIER------------VILHIQVSTLHPST 297 (425)
T ss_dssp BSSSS--CCCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEEE---EEHHHHHH------------HHHHHHTTTCSSCH
T ss_pred cCCCC--CCCCcccc-CCCCCEEEEccchhhcc-CccceEEEe---cCHHHHHH------------HHHHHHHhcCCCCH
Confidence 77531 11112122 23458999999999999 999999996 67777777 55544444557788
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-----CHHHHHHHH
Q 012238 355 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMT 429 (467)
Q Consensus 355 ~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll 429 (467)
+.|.++..+|++.. .+.|.+++++++++++++|+.+.+.|+ +. +|+...+..|.+|+|+|+.+ +.+++.+.+
T Consensus 298 ~~q~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~-~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l 374 (425)
T 2r2n_A 298 FNQLMISQLLHEWG-EEGFMAHVDRVIDFYSNQKDAILAAAD-KW-LTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKA 374 (425)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHH
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHH
Confidence 89998888876411 123456688999999999999999998 64 11112456788999999854 235445555
Q ss_pred HcccEEEeCC-----------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 430 NKWHVYMTKD-----------G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 430 ~~~gI~v~~g-----------g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
.++||.+.|| + |||++..+++++++++++|+++++++
T Consensus 375 ~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 375 VKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp HHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 5679999874 2 99998558999999999999998753
No 34
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=1.4e-41 Score=340.30 Aligned_cols=336 Identities=12% Similarity=0.124 Sum_probs=266.1
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT 161 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt 161 (467)
++.|||+.|.+ ..++ ++.+.+++.+.+..+ ...|.+..|..++|+++++++....|..++++ +|++ |+|++
T Consensus 30 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g~~ 101 (386)
T 1u08_A 30 HQAINLSQGFP----DFDG-PRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGAT 101 (386)
T ss_dssp TTCEECCCSSC----SSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSHH
T ss_pred CCeEEecCCCC----CCCC-CHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--cCChH
Confidence 47899999987 3333 788999998887653 36788888999999999999865445556678 9999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
+++.++ +...+.+||+|+++.|+|..+...++..|++++.+++++ +++++|++.+++.++ ++++++++++||||
T Consensus 102 ~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~---~~~~~v~l~~p~np 175 (386)
T 1u08_A 102 EALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEFAALLS---ERTRLVILNTPHNP 175 (386)
T ss_dssp HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred HHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCc-ccCcCCHHHHHHhhc---ccCEEEEEeCCCCC
Confidence 999998 333467999999999999999999999999999999853 357899999999986 57788888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (467)
||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+....++++++.|+||.++++|+|+||++ .
T Consensus 176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~---~ 250 (386)
T 1u08_A 176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG--HASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCV---A 250 (386)
T ss_dssp TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC--CCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEE---C
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCC--CcChhcccCccCcEEEEecchhhcCCcccceEEEE---c
Confidence 999999999999999999999999999999998875321 11111111123578999999999999999999996 6
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 401 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~ 401 (467)
++++++. +.........+++.+.|.++..+|++. .+++++.+++++++++++.+.|+ ++|
T Consensus 251 ~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g- 310 (386)
T 1u08_A 251 PAPISAE------------IRKVHQYLTFSVNTPAQLALADMLRAE------PEHYLALPDFYRQKRDILVNALN-ESR- 310 (386)
T ss_dssp CHHHHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHC------THHHHTHHHHHHHHHHHHHHHTT-SSS-
T ss_pred CHHHHHH------------HHHHHHhhccCCChHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence 7887776 444333223456677777777777532 23367888999999999999999 776
Q ss_pred CCCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCC--------C----eEEeccCChhhHHHHHHHHHH
Q 012238 402 GKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKD--------G----RISLAGLSLAKCEYLADAIID 461 (467)
Q Consensus 402 ~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~g--------g----Ris~~~~~~~~i~~~~~~l~~ 461 (467)
+.+..+++|+|+|+.+ +. ++.+++++++||.+.+| + ||+++. +++++++++++|++
T Consensus 311 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 311 ---LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp ---CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred ---CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 5777788899998754 23 34566776789999864 2 999987 88999999998864
No 35
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=5.6e-42 Score=348.24 Aligned_cols=360 Identities=17% Similarity=0.217 Sum_probs=274.4
Q ss_pred CCcEEecCcccCCCCCCCCchHHH--HHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCc---eeeeec
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVV--KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR---VATVQG 157 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v--~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~---i~~~~t 157 (467)
+++|||+.|.|.+ .+. ++.+ .+++.+.+.......|.+..|.+++|+++++++...+ ..+++++ |++ |
T Consensus 47 ~~~i~l~~g~~~~-~~~---~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~--t 119 (430)
T 2x5f_A 47 STTYNATIGMATN-KDG---KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV--T 119 (430)
T ss_dssp TCSEECCCSSCEE-TTE---ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE--E
T ss_pred CCcEEeeeeeccC-CCC---chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE--c
Confidence 5789999998721 111 2333 4544444332123689888899999999999986543 4455788 888 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~ 236 (467)
+|+++++.++ +...+.+||+|+++.|+|..+...++. .|++++.++++++ ++++|++.+++.+++.+.++++++++
T Consensus 120 ~g~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~v~i~ 196 (430)
T 2x5f_A 120 NALTHGLSLV--GDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMILN 196 (430)
T ss_dssp SHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT-TSCBCSHHHHHHHHHCCSSEEEEEEC
T ss_pred CCchHHHHHH--HHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc-cCCcCHHHHHHHHHhcCCCCEEEEEc
Confidence 9999999998 344467999999999999999999999 9999999998643 37899999999998543478888999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-----cCCeeEEeccCCCCCCCCCCCChhHHH-HHHhcCCe---EEEEecCccCcc
Q 012238 237 CAHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDNDASSVR-LFATRGME---LLVAQSYSKNLG 307 (467)
Q Consensus 237 ~p~NPTG~~~~~~~l~~l~~~~~~-----~~~~li~Deay~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~S~SK~~~ 307 (467)
+||||||.+++.+++++|+++|++ +|+++|+||+|.++.+++. ...++. .+....++ +++++||||.++
T Consensus 197 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 274 (430)
T 2x5f_A 197 YPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV--YTQSLFTALTNLHSNAILPIRLDGATKEFF 274 (430)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS--CCSCHHHHHHTTCCTTEEEEEEEEHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc--cchHHHHHHhhccCCcceEEEEEecccCCC
Confidence 999999999999999999999999 9999999999999987531 112232 33233567 899999999999
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG-NPALFDEWKAEMEMMAGRIKN 386 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~l~~~~~~~~~ 386 (467)
++|+|+||++.+..++++++. +........+..+.+++.+.|.++..+|+ +. .|.+++++.++++++
T Consensus 275 ~~G~riG~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~ 342 (430)
T 2x5f_A 275 AWGFRVGFMTFGTSDQTTKEV--------LEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK----QFDKEIEQNIQTLKE 342 (430)
T ss_dssp CGGGCCEEEEEBCCCHHHHHH--------HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEecCCHHHHHH--------HHHHHhhhhhcccCCCChHHHHHHHHHHccCh----HHHHHHHHHHHHHHH
Confidence 999999999611128888877 33221111112456788889999998887 75 345567789999999
Q ss_pred HHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CH-HHHHHHHHcccEEEeCCC----eEEeccCChhhHHHHHHH
Q 012238 387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG----RISLAGLSLAKCEYLADA 458 (467)
Q Consensus 387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg----Ris~~~~~~~~i~~~~~~ 458 (467)
+++.+.+.|+ +.....++.+..+++|+|+|+.+ +. ++.+.+++++||.+.+|+ |||++..+++++++++++
T Consensus 343 ~~~~l~~~L~-~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~ 421 (430)
T 2x5f_A 343 RYEVTKEVVY-ADQYHSHWQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDS 421 (430)
T ss_dssp HHHHHHHHHT-CGGGTTTEEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHH
T ss_pred HHHHHHHHHH-hhCCCCCceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHH
Confidence 9999999997 43100126777888999988754 34 456677765799999973 999994488999999999
Q ss_pred HHHHHHhcC
Q 012238 459 IIDSYHNVS 467 (467)
Q Consensus 459 l~~~l~~~~ 467 (467)
|++++++++
T Consensus 422 l~~~l~~~~ 430 (430)
T 2x5f_A 422 IAKAIDDLR 430 (430)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999998763
No 36
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.8e-42 Score=347.48 Aligned_cols=341 Identities=15% Similarity=0.107 Sum_probs=267.2
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCch
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT 161 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt 161 (467)
++.|||+.|.+ ..+. ++.+.+++.+.+... ...|.+..|..++|+++++++...+|..++++ +|++ |+|++
T Consensus 25 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~--t~g~~ 96 (411)
T 2o0r_A 25 IGAVNLGQGFP----DEDG-PPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLV--TVGAT 96 (411)
T ss_dssp TTCEESSCSSC----SSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--EEHHH
T ss_pred CCeeeccCcCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEE--eCCHH
Confidence 46899999987 3333 788999998888654 36798888999999999999865555556677 9999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecC-CCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N 240 (467)
+++.++ +...+.+||+|+++.|+|..+...++..|++++.++++++ .++.+|++.+++.++ ++++++++++|+|
T Consensus 97 ~al~~~--~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~~~n 171 (411)
T 2o0r_A 97 EAIAAA--VLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT---PRTRALIINSPHN 171 (411)
T ss_dssp HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC---TTEEEEEEESSCT
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc---cCceEEEEeCCCC
Confidence 999998 3444679999999999999999999999999999998543 246699999999986 5678888999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (467)
|||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+....+.++++.|+||.++++|+|+||++
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--- 246 (411)
T 2o0r_A 172 PTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWAC--- 246 (411)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEE---
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccCCCCCEEEEeechhhcCCccceEEEEe---
Confidence 999999999999999999999999999999999887531 111121111113578999999999999999999996
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 400 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g 400 (467)
.++++++. +.........+.+.+.|.++..+|+.. .+.+++.+++++++++++.+.|+ +.|
T Consensus 247 ~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g 307 (411)
T 2o0r_A 247 GPAELIAG------------VRAAKQYLSYVGGAPFQPAVALALDTE------DAWVAALRNSLRARRDRLAAGLT-EIG 307 (411)
T ss_dssp CCHHHHHH------------HHHHHHHHTSCCCTTHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred eCHHHHHH------------HHHHHhhccCCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-HcC
Confidence 67888776 433332222344556677777666432 23467888999999999999999 776
Q ss_pred CCCCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCC-----------------C----eEEeccCChhhH
Q 012238 401 SGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKD-----------------G----RISLAGLSLAKC 452 (467)
Q Consensus 401 ~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~g-----------------g----Ris~~~~~~~~i 452 (467)
+.+..+++|+|+|+.+ +. ++.+++++++||.+.+| + ||+++. +++++
T Consensus 308 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i 382 (411)
T 2o0r_A 308 ----FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTL 382 (411)
T ss_dssp ----CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHH
T ss_pred ----CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHH
Confidence 5777788898988754 23 45666776679998652 2 999987 88999
Q ss_pred HHHHHHHHHHHHh
Q 012238 453 EYLADAIIDSYHN 465 (467)
Q Consensus 453 ~~~~~~l~~~l~~ 465 (467)
++++++|++++++
T Consensus 383 ~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 383 DEAIRRLSVLAER 395 (411)
T ss_dssp HHHHHHHGGGGC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987754
No 37
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=7.8e-42 Score=340.93 Aligned_cols=337 Identities=16% Similarity=0.104 Sum_probs=268.1
Q ss_pred CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS 159 (467)
Q Consensus 81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g 159 (467)
.+.+.|||+.|.+ ..+. ++.+.+++.+.+.......|.+..|..++|+++++++...+|..++++ +|++ |+|
T Consensus 23 ~g~~~idl~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~~g 95 (376)
T 2dou_A 23 RGVGLIDLSIGST----DLPP-PEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--LIG 95 (376)
T ss_dssp TTCCCEECSSCCC----CCCC-CHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--ESS
T ss_pred cCCCEEeccCCCC----CCCC-CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCC
Confidence 3457999999987 3333 688999998887543246787667999999999999865445555566 8999 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
+++++.++ +...+.+||+|+++.|+|..+...++..|++++.+|+ ++++.+|++.+++.++ ++++++++++||
T Consensus 96 ~~~a~~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~---~~~~~v~l~~p~ 168 (376)
T 2dou_A 96 SQEGLAHL--LLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVW---REAKVLLLNYPN 168 (376)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHH---HHEEEEEECSSC
T ss_pred cHHHHHHH--HHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhc---cCceEEEECCCC
Confidence 99999998 3444668999999999999999999999999999988 4566789999999987 467888889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
||||.+++.+++++|+++|++||+++|+||+|.++.+++...... .+.+..++++++.||||.+|++|+|+||++
T Consensus 169 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~-- 243 (376)
T 2dou_A 169 NPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPL---ALPGAKERVVELFSLSKSYNLAGFRLGFAL-- 243 (376)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG---GSTTGGGTEEEEEEHHHHHTCGGGCCEEEE--
T ss_pred CCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh---hcCCCCCcEEEEecchhhcCChhheeEEEe--
Confidence 999999999999999999999999999999999988653111111 111223578999999999999999999995
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
.++++++. +.........+++.+.|.++..+|++. .+++++.+++++++++.+.+.|+ ++
T Consensus 244 -~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~ 303 (376)
T 2dou_A 244 -GSEEALAR------------LERVKGVIDFNQYAGVLRMGVEALKTP------KEVVRGYARVYRERALGMAEALK-GV 303 (376)
T ss_dssp -ECHHHHHH------------HHHHHHHHCCCSCHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred -cCHHHHHH------------HHHHHHhcccCCCHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 67888877 444433334456778888888888763 23467888999999999999998 65
Q ss_pred CCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHH
Q 012238 400 KSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSY 463 (467)
Q Consensus 400 g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l 463 (467)
+.+..+.+|+|+|+.+. .++.++++++ ||.+.+| + ||+++. +++++++++++|++++
T Consensus 304 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 304 -----LSLLPPRATMYLWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp -----SEECCCCBSSEEEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred -----cCccCCCeeEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 35667788999987552 3456677765 9999875 2 999987 8899999999998865
No 38
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=2.1e-41 Score=337.55 Aligned_cols=349 Identities=12% Similarity=0.048 Sum_probs=274.7
Q ss_pred CCCcccchHHHhhc-CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCC
Q 012238 66 PPDPILGVSEAFKA-DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN 144 (467)
Q Consensus 66 ~~~~i~~~~~~~~~-~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~ 144 (467)
+++++.++.+.++. ....++|||+.|.+ ..+. ++.+.+++.+.+.. ...|.+..|.+++|+++++++...+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~g~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~~g 77 (376)
T 3ezs_A 5 EPYPFERLRALLKEITPKKRGLDLGIGEP----QFET-PKFIQDALKNHTHS--LNIYPKSAFEESLRAAQRGFFKRRFK 77 (376)
T ss_dssp CCCHHHHHHHHHTTCCCSSCCCBCSSCCC----CSCC-CHHHHHHHHTTGGG--GGSCCCTTCCHHHHHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHhhhccCCEEEeCCCCC----CCCC-CHHHHHHHHHhhhh--cCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 44555566655543 12238999999987 4443 78899998887632 37798888999999999999866556
Q ss_pred cccccCceeeeecCCchhHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238 145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~--gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
..+++++|++ |+|+++++.++ +...+.+ ||+|+++.|+|..+...++..|++++.++++++. ++++ .+++.
T Consensus 78 ~~~~~~~i~~--t~g~~~al~~~--~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~l~~~ 150 (376)
T 3ezs_A 78 IELKENELIS--TLGSREVLFNF--PSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEN--DFTP-SLNEK 150 (376)
T ss_dssp CCCCGGGEEE--ESSSHHHHHHH--HHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG--TSCC-CCCHH
T ss_pred CCCCHHHEEE--CcCcHHHHHHH--HHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCC--Ccch-hHHhh
Confidence 6567899999 99999999997 3445678 9999999999999999999999999999985432 3454 66666
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-----cCCeEE
Q 012238 223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-----RGMELL 297 (467)
Q Consensus 223 l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-----~~~~~i 297 (467)
+. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..+...... ..++++
T Consensus 151 ~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i 224 (376)
T 3ezs_A 151 EL---QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFKNVL 224 (376)
T ss_dssp HH---HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCTTEE
T ss_pred hc---cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccCcEE
Confidence 66 3556888899999999999999999999999999999999999999987642 222222222 457899
Q ss_pred EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
++.||||.+|++|+|+||++ .++++++. +.........+++.+.+.++..+|.+. +++
T Consensus 225 ~~~s~sK~~g~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~ 282 (376)
T 3ezs_A 225 VIHSLSKRSSAPGLRSGFIA---GDSRLLEK------------YKAFRAYLGYTSANAIQKASEAAWLDD-------RHA 282 (376)
T ss_dssp EEEESTTTTTCGGGCCEEEE---ECHHHHHH------------HHHHHTTTCCCCCHHHHHHHHHHHHCS-------HHH
T ss_pred EEecchhccCCccceeEEEe---eCHHHHHH------------HHHHHhhhcCCCChHHHHHHHHHHhCc-------HHH
Confidence 99999999999999999995 68888877 555555445577888888888888764 236
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC--HHHHHHHHHcccEEEeCC----------C--eEE
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--KAQSDNMTNKWHVYMTKD----------G--RIS 443 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~--~~~~~~ll~~~gI~v~~g----------g--Ris 443 (467)
++.+++++++++.+.+.|+ + +. .+.+|+|+|+.+. .++.+++++++||.+.+| + ||+
T Consensus 283 ~~~~~~~~~~~~~l~~~l~---~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis 353 (376)
T 3ezs_A 283 EFFRNIYANNLKLARKIFK---N----TL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLA 353 (376)
T ss_dssp HHHHHHHHHHHHHHHHHST---T----CC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhc---C----CC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEE
Confidence 7888999999999998885 3 33 5678899998773 455667776579999864 2 999
Q ss_pred eccCChhhHHHHHHHHHHHHHhc
Q 012238 444 LAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 444 ~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
++. +++++++++++|++++++.
T Consensus 354 ~~~-~~~~i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 354 LVY-DTPLLEKPLEIIETYRENH 375 (376)
T ss_dssp CCS-CHHHHHHHHHHHHHHHCC-
T ss_pred EcC-CHHHHHHHHHHHHHHHHhc
Confidence 987 8999999999999998764
No 39
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=1.4e-41 Score=345.06 Aligned_cols=344 Identities=14% Similarity=0.061 Sum_probs=271.8
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCC
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLS 159 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~g 159 (467)
++.|||+.|.+ ..+. ++.+.+++.+.+... ....|.+..|..++|+++++++....|..++++ +|++ |+|
T Consensus 37 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g 109 (429)
T 1yiz_A 37 YKPLNLGQGFP----DYHA-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLV--TVG 109 (429)
T ss_dssp HCCEECCSSSC----SSCC-CHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESH
T ss_pred CCEEEecCCCC----CCCC-CHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEE--ecC
Confidence 36899999987 3343 788999998887541 136787778999999999999865445555678 9999 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC--------CCCCChhhHHHHHHcCCCCcE
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------TVGLDFEGMIADIKAAPGGSF 231 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~~~~~~ 231 (467)
+++++.++ +...+.+||+|+++.|+|..+...++..|++++.+|++++. ++++|++.+++.++ ++++
T Consensus 110 ~~~a~~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~ 184 (429)
T 1yiz_A 110 AYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKTK 184 (429)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEE
T ss_pred hHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc---cCce
Confidence 99999998 33346799999999999999999999999999999986432 56799999999986 5778
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238 232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE 311 (467)
Q Consensus 232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (467)
++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.|+||.++++|+
T Consensus 185 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 185 MIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhccCCcCceEEEecchhccCCCCc
Confidence 888899999999999999999999999999999999999999887531 111121111123579999999999999999
Q ss_pred ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHHHH
Q 012238 312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN-----PALFDEWKAEMEMMAGRIKN 386 (467)
Q Consensus 312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~-----~~~~~~~~~~l~~~~~~~~~ 386 (467)
|+||++ .++++++. +.........+.+.+.|.++..+|++ ..+ .+++++.++++++
T Consensus 263 r~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~----~~~~~~~~~~~~~ 323 (429)
T 1yiz_A 263 KIGWAY---GPEALLKN------------LQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP----ECYFNSISGELMA 323 (429)
T ss_dssp CCEEEE---SCHHHHHH------------HHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST----TSHHHHHHHHHHH
T ss_pred ceEEEE---eCHHHHHH------------HHHHHhhcccCCChHHHHHHHHHHhcccccccch----HHHHHHHHHHHHH
Confidence 999996 67888777 54443333456777788888777764 211 2346788899999
Q ss_pred HHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------------H-HHHHHHHHcccEEEeCC----------
Q 012238 387 VRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------------K-AQSDNMTNKWHVYMTKD---------- 439 (467)
Q Consensus 387 ~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------------~-~~~~~ll~~~gI~v~~g---------- 439 (467)
+++.+.+.|+ ++| +.+..+.+|+|+|+.+. . ++++++++++||.+.+|
T Consensus 324 ~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~ 398 (429)
T 1yiz_A 324 KRDYMASFLA-EVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKH 398 (429)
T ss_dssp HHHHHHHHHH-HHT----CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGG
T ss_pred HHHHHHHHHH-hCC----CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccC
Confidence 9999999999 776 56777888999987542 2 34566776789999874
Q ss_pred ---C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 440 ---G--RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 440 ---g--Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
+ ||+++. +++++++++++|+++++.
T Consensus 399 ~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 399 LGEDFVRYCFFK-KDENLQKAAEILRKWKGS 428 (429)
T ss_dssp GTTTEEEEECCS-CHHHHHHHHHHHHHHSCC
T ss_pred CCCCeEEEEecC-CHHHHHHHHHHHHHhccC
Confidence 2 999997 899999999999998764
No 40
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=4.5e-41 Score=339.02 Aligned_cols=364 Identities=18% Similarity=0.153 Sum_probs=277.9
Q ss_pred CCCCCCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHh
Q 012238 61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF 140 (467)
Q Consensus 61 ~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~ 140 (467)
++...+...+. ..+.+..+ +++.|+|+.|.+. ...++. ++.+.+++.+.+.... ..|.+..|.+++|+++++++.
T Consensus 18 ~~~~~~~~~~~-~~~~~~~~-g~~~i~l~~~~~~-~~~~~~-~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~l~ 92 (406)
T 1xi9_A 18 SVEYAIRDVVL-PARELEKK-GIKVIRLNIGDPV-KFDFQP-PEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREK 92 (406)
T ss_dssp TCCC--------CHHHHHHT-TCCCEECCCCCGG-GTTCCC-CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHH
T ss_pred cCChhHHHHHH-HHHHHHHc-CCCEEEecCCCCC-cCCCCC-CHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHH
Confidence 34444444455 55555543 4689999999871 112233 6888899888876543 578888899999999999997
Q ss_pred CCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHH
Q 012238 141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI 220 (467)
Q Consensus 141 ~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 220 (467)
..+|..+++++|++ |+|+++++.++ +...+.+||+|++++|+|..+...++..|++++.+++++++++.+|++.++
T Consensus 93 ~~~g~~~~~~~v~~--t~g~~~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 168 (406)
T 1xi9_A 93 RKNGVDITPDDVRV--TAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 168 (406)
T ss_dssp HHHCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HhcCCCCCHHHEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHH
Confidence 66666677889999 99999999998 333467999999999999999999999999999999864346678999999
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEE
Q 012238 221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVA 299 (467)
Q Consensus 221 ~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 299 (467)
+.++ ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.++. ...++..+ + .++ ++++
T Consensus 169 ~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~-~-~~~~~i~~ 240 (406)
T 1xi9_A 169 KKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG---EHISPGSL-T-KDVPVIVM 240 (406)
T ss_dssp HHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS---CCCCHHHH-C-SSSCEEEE
T ss_pred HhhC---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHc-C-CCceEEEE
Confidence 9987 467888889999999999999999999999999999999999999988742 12223233 2 456 8999
Q ss_pred ecCccCcccCCCccceEEEecCCH----HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238 300 QSYSKNLGLYAERIGAMNVVCSSS----DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA 375 (467)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 375 (467)
+||||.++++|+|+||+++ +.++ ++++. +....... .+++.+.|.++..+|+.. .+
T Consensus 241 ~s~sK~~~~~G~r~G~~~~-~~~~~~~~~l~~~------------l~~~~~~~-~~~~~~~~~a~~~~l~~~------~~ 300 (406)
T 1xi9_A 241 NGLSKVYFATGWRLGYMYF-VDPENKLSEVREA------------IDRLARIR-LCPNTPAQFAAIAGLTGP------MD 300 (406)
T ss_dssp EESTTTTCCGGGCCEEEEE-ECTTCTTHHHHHH------------HHHHHHHT-CCSCSHHHHHHHHHHHSC------CH
T ss_pred eccccccCCCccEEEEEEE-ecCchhHHHHHHH------------HHHHHHhh-cCCCHHHHHHHHHHHhCC------cH
Confidence 9999999999999999942 2666 77776 44333322 456677788888888432 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC------CCH-HHHHHHHHcccEEEeCC--------C
Q 012238 376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG------LNK-AQSDNMTNKWHVYMTKD--------G 440 (467)
Q Consensus 376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~------l~~-~~~~~ll~~~gI~v~~g--------g 440 (467)
.+++++++++++++++.+.|+ +++ ++.+..+++|+|+|+. .+. ++.+++++++||.+.+| +
T Consensus 301 ~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~ 376 (406)
T 1xi9_A 301 YLKEYMKKLKERRDYIYKRLN-EIP---GISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAG 376 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TST---TEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCC---CCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCC
Confidence 266788899999999999998 762 1677778889998853 233 44566775679999875 2
Q ss_pred --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 --RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 --Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++ .+++++++++++|.++++++
T Consensus 377 ~lRis~~-~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 377 HFRAVFL-PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp BEEEECC-SCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEec-CCHHHHHHHHHHHHHHHHHH
Confidence 99999 48999999999999998764
No 41
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=1.1e-40 Score=339.37 Aligned_cols=353 Identities=16% Similarity=0.188 Sum_probs=277.1
Q ss_pred hcCCCC-CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-----------CCcCCCCcchHHHHHHHHHHHhC--CC
Q 012238 78 KADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-----------NKEYLPIEGLAAFNKVTAELLFG--AD 143 (467)
Q Consensus 78 ~~~~~~-~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-----------~~~Y~~~~G~~~lr~aia~~l~~--~~ 143 (467)
..+.+| ..|+|+++.. +...+.+.+++.+...... ...|.+..|.++||+++++++.. ..
T Consensus 32 ~~~~~p~~~i~lg~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~ 105 (435)
T 3piu_A 32 HEVHNTNGIIQMGLAEN------QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGN 105 (435)
T ss_dssp BTTTBTTSBEECSSCCC------CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTT
T ss_pred CcccCCCCeEEeccccc------cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCC
Confidence 333444 5789998654 3347788888877543211 14698999999999999999873 33
Q ss_pred CcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 144 ~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
+..+++++|++ |+||++++.++ +...+.+||+|+++.|+|..+...++ ..|++++.++.+++.++.+|++.+++.
T Consensus 106 ~~~~~~~~v~~--~~gg~~a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 181 (435)
T 3piu_A 106 KVTFDPNHLVL--TAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEA 181 (435)
T ss_dssp SSCCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHH
T ss_pred CCCCCHHHEEE--cCChHHHHHHH--HHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHH
Confidence 45566889999 99999999998 44456799999999999999998888 799999999987655678999999999
Q ss_pred HHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-------
Q 012238 223 IKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR------- 292 (467)
Q Consensus 223 l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~------- 292 (467)
+++. ..+++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+...
T Consensus 182 l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~~~ 259 (435)
T 3piu_A 182 YQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENS 259 (435)
T ss_dssp HHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC-------
T ss_pred HHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhcccccccccc
Confidence 9741 23778899999999999999999999999999999999999999999777542 22233333332
Q ss_pred --CCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhH
Q 012238 293 --GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALF 370 (467)
Q Consensus 293 --~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 370 (467)
.++++++.||||.+|++|+|+||++ +.++++++. +..... +...+.+.+.++..+|.+..+.
T Consensus 260 ~~~~~~i~i~s~sK~~g~~G~r~G~~~--~~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 323 (435)
T 3piu_A 260 EVWQRVHVVYSLSKDLGLPGFRVGAIY--SNDDMVVAA------------ATKMSS--FGLVSSQTQHLLSAMLSDKKLT 323 (435)
T ss_dssp CGGGGEEEEEESSSSSCCGGGCEEEEE--ESCHHHHHH------------HHHHGG--GSCCCHHHHHHHHHHHHCHHHH
T ss_pred CCCCCEEEEEeeecccCCCceeEEEEE--eCCHHHHHH------------HHHHhh--cCCCCHHHHHHHHHHhcChHHH
Confidence 4678999999999999999999996 456766665 444433 3346677888888888766442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC-----------HHHHHHHHHcccEEEeCC
Q 012238 371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-----------KAQSDNMTNKWHVYMTKD 439 (467)
Q Consensus 371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----------~~~~~~ll~~~gI~v~~g 439 (467)
.+++++.+++++++++.+.+.|+ +.| +++..+++|+|+|+.+. .++++++++++||.+.+|
T Consensus 324 ---~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 395 (435)
T 3piu_A 324 ---KNYIAENHKRLKQRQKKLVSGLQ-KSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPG 395 (435)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHH-TTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEG
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH-hcC----CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCC
Confidence 23467888999999999999999 776 57788888899998653 245677778779999885
Q ss_pred --------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 440 --------G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 --------g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||+++..+++++++++++|.++++++
T Consensus 396 ~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 396 SSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp GGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 2 99998768899999999999998865
No 42
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=7e-41 Score=338.55 Aligned_cols=354 Identities=14% Similarity=0.162 Sum_probs=271.4
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhC------CCCcccccCceeeee
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG------ADNSVLKEQRVATVQ 156 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~------~~~~~~~~~~i~~~~ 156 (467)
+++|+|+.|.|......+ +++.+.+++.+.+.......|.+..|..++|+++++++.. ..|..+++++|++
T Consensus 33 ~~~i~l~~g~p~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~-- 109 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLL-TSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVL-- 109 (416)
T ss_dssp SCCEECCCCCTTTTSCSC-CCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEE--
T ss_pred CCeEEecCcCCCcccCCC-CCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEE--
Confidence 478999999873212333 3788999998887654446798888999999999999871 3566677899999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~ 236 (467)
|+|+++++.++ +...+.+||+|+++.|+|..+...++..|++++.++++++.++.+|++.+++.++ +++++++++
T Consensus 110 ~~g~~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~ 184 (416)
T 1bw0_A 110 CSGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVT 184 (416)
T ss_dssp ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEE
T ss_pred eCChHHHHHHH--HHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc---cCCeEEEEe
Confidence 99999999998 3334679999999999999999999999999999998654457799999999887 467888899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCC--ChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314 (467)
Q Consensus 237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG 314 (467)
+|+||||.+++.+++++|+++|++||++||+||+|.++.+++... ...++..+ ....++++++||||.|+++|+|+|
T Consensus 185 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~Glr~G 263 (416)
T 1bw0_A 185 NPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETTVPRVILGGTAKNLVVPGWRLG 263 (416)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCSCCEEEEEESTTTTSCGGGCCE
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCCCcEEEEecchhhCCCCCceEE
Confidence 999999999999999999999999999999999999987653200 11111111 223468999999999999999999
Q ss_pred eEEEecCCH-HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 315 AMNVVCSSS-DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 393 (467)
Q Consensus 315 ~~~~v~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~ 393 (467)
|++ +.++ ++++. +...++.... ...+++.+.|.++..+|+... ...+++.+++++++++++.+
T Consensus 264 ~~~--~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~ 327 (416)
T 1bw0_A 264 WLL--YVDPHGNGPS--------FLEGLKRVGM-LVCGPCTVVQAALGEALLNTP-----QEHLDQIVAKIEESAMYLYN 327 (416)
T ss_dssp EEE--EECTTCSCHH--------HHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred EEE--eeCchhhHHH--------HHHHHHHHhc-cccCCCcHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHH
Confidence 996 3444 34444 3322333211 133567788888888876421 23366788889999999999
Q ss_pred HhhhccCCCCCcccccCCcceEEecCC---------CH-HHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHH
Q 012238 394 SLSAKDKSGKDWSFILRQIGMFSFTGL---------NK-AQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYL 455 (467)
Q Consensus 394 ~l~~~~g~~~~~~~~~~~~g~f~~~~l---------~~-~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~ 455 (467)
.|+ +++ ++.+..+.+|+|+|+.+ +. ++++++++++||.+.+| + ||+++. ++++++++
T Consensus 328 ~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~-~~e~l~~~ 402 (416)
T 1bw0_A 328 HIG-ECI---GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR-PVEVYREA 402 (416)
T ss_dssp HHT-TST---TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHH
T ss_pred HHH-hCC---CCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecC-CHHHHHHH
Confidence 998 762 15666778888888643 33 34667766779999986 2 999975 88999999
Q ss_pred HHHHHHHHHhc
Q 012238 456 ADAIIDSYHNV 466 (467)
Q Consensus 456 ~~~l~~~l~~~ 466 (467)
+++|.+++++.
T Consensus 403 l~~l~~~l~~~ 413 (416)
T 1bw0_A 403 VERIKAFCQRH 413 (416)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 43
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=8.8e-41 Score=332.58 Aligned_cols=344 Identities=15% Similarity=0.158 Sum_probs=270.9
Q ss_pred CCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCC
Q 012238 66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143 (467)
Q Consensus 66 ~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~ 143 (467)
+++++.++.+.... ..+++.|+|+.|.+ ..++ ++.+.+++.+.+... ...|.+..|.+++|+++++++...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~~~~ 83 (370)
T 2z61_A 10 ESFEVMDILALAQKLESEGKKVIHLEIGEP----DFNT-PKPIVDEGIKSLKEG-KTHYTDSRGILELREKISELYKDKY 83 (370)
T ss_dssp CCCTTHHHHHHHHHHHHTTCCCEECCCCSC----SSCC-CHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEccCCCC----CCCC-CHHHHHHHHHHHHcC-ccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 34455555544331 13457999999987 4433 688999998887654 3679888899999999999997766
Q ss_pred CcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHH
Q 012238 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (467)
Q Consensus 144 ~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l 223 (467)
|..+++++|++ |+|+++++.++ +...+.+||+|++++|+|..+...++..|++++.++ +|++.+++.+
T Consensus 84 g~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l 151 (370)
T 2z61_A 84 KADIIPDNIII--TGGSSLGLFFA--LSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEAL 151 (370)
T ss_dssp SCCCCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHC
T ss_pred CCCCChhhEEE--CCChHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhc
Confidence 77777899999 99999999998 333467999999999999999999999999988876 6899999988
Q ss_pred HcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238 224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS 303 (467)
Q Consensus 224 ~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 303 (467)
+ ++++++++++||||||.+++.+ |+++|++||+++|+||+|.++.+++. ..++..+....++++++.|||
T Consensus 152 ~---~~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~s 221 (370)
T 2z61_A 152 S---DKTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDENLEKTILINGFS 221 (370)
T ss_dssp C---SSEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCTTCSSEEEEEEST
T ss_pred c---cCceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccCCCCcEEEEecCh
Confidence 7 4678888899999999999988 88889999999999999999887531 111211211346799999999
Q ss_pred cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Q 012238 304 KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN-PALFDEWKAEMEMMAG 382 (467)
Q Consensus 304 K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~l~~~~~ 382 (467)
|.++++|+|+||++ .++++++. +.........+++.+.|.++..+|+. . .+++++.++
T Consensus 222 K~~~~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~ 280 (370)
T 2z61_A 222 KLYAMTGWRIGYVI---SNDEIIEA------------ILKLQQNLFISAPTISQYAALKAFEKET------EREINSMIK 280 (370)
T ss_dssp TTTTCGGGCCEEEE---CCHHHHHH------------HHHHHHHHTSSSCHHHHHHHGGGGSHHH------HHHHHHHHH
T ss_pred hccCCccceEEEEE---ECHHHHHH------------HHHHHhhcccCCCHHHHHHHHHHHhccC------HHHHHHHHH
Confidence 99999999999996 77787777 44444433456778888888777754 2 234678889
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--CH-HHHHHHHHcccEEEeCC--------C--eEEeccCCh
Q 012238 383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSL 449 (467)
Q Consensus 383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~ 449 (467)
+++++++++.+.|+ ++| +++..+++|+|+|+.+ +. ++.+++++++||.+.+| + ||+++. ++
T Consensus 281 ~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~ 354 (370)
T 2z61_A 281 EFDRRRRLVLKYVK-DFG----WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SY 354 (370)
T ss_dssp HHHHHHHHHHHHHH-HTT----CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CH
T ss_pred HHHHHHHHHHHHHH-HcC----CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CH
Confidence 99999999999999 776 5677788899999876 33 44666665679999875 2 999995 89
Q ss_pred hhHHHHHHHHHHHHH
Q 012238 450 AKCEYLADAIIDSYH 464 (467)
Q Consensus 450 ~~i~~~~~~l~~~l~ 464 (467)
+++++++++|+++++
T Consensus 355 ~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 355 ENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 44
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=5.3e-41 Score=335.26 Aligned_cols=341 Identities=9% Similarity=0.082 Sum_probs=270.5
Q ss_pred CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
.++++|||+.|.+ ..+. ++.+.+++.+.+.... ..|.+. ..++++++++++....|..+++++|++ |+|+
T Consensus 22 ~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~--~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~ 91 (383)
T 3kax_A 22 KNEELIHAWIADM----DFEV-PQPIQTALKKRIEHPI-FGYTLP--PENIGDIICNWTKKQYNWDIQKEWIVF--SAGI 91 (383)
T ss_dssp SSSCCEECCCSSC----SSCC-CHHHHHHHHHHHHSCC-CCCCCC--CTTHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred CCCCeeecccccC----CCCC-CHHHHHHHHHHHhcCC-CCCCCC--CHHHHHHHHHHHHHHhCCCCChhhEEE--cCCH
Confidence 3468999999976 5554 8899999998886543 667554 678999999998766666667889999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
+++++++ +...+.+||+|+++.|+|..+...++..|++++.++++.++ ++.+|++.+++.++ ++++++++++||
T Consensus 92 ~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~ 166 (383)
T 3kax_A 92 VPALSTS--IQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQ---QGVKLMLLCSPH 166 (383)
T ss_dssp HHHHHHH--HHHHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT---TTCCEEEEESSB
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhC---cCCeEEEEeCCC
Confidence 9999998 44456799999999999999999999999999999985322 35699999999995 567788889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEecCccCcccCCCccceEEE
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNV 318 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (467)
||||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+. +..++++++.||||.++++|+|+||++
T Consensus 167 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~- 243 (383)
T 3kax_A 167 NPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHT--HTPFASLSEELAARTITCMAPSKTFNIAGLQASIII- 243 (383)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE-
T ss_pred CCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCC--ceeHhhcCccccCcEEEEEEChhhccCcchhheEEE-
Confidence 99999999999999999999999999999999998875321 11111111 113678999999999999999999996
Q ss_pred ecCCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012238 319 VCSSSDLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 397 (467)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~ 397 (467)
+.++++++. +....... +.+++.+++.++..+|.+. .+.+++.+++++++++.+.+.|+
T Consensus 244 -~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~- 303 (383)
T 3kax_A 244 -IPNEKLRQA------------FTSIQYRQGFHGLNIFAYTAMQSAYTEC------NDWLNEIRFYIEDNAKFACEYIK- 303 (383)
T ss_dssp -CCCHHHHHH------------HHHHHHHTTCCCCCHHHHHHHHHHTTTC------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -eCCHHHHHH------------HHHHHhhcccCCCCHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 447777776 44433322 3467888888888888763 23467888999999999999998
Q ss_pred cc-CCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHH
Q 012238 398 KD-KSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAII 460 (467)
Q Consensus 398 ~~-g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~ 460 (467)
+. + .+.+..+++++++|+.+ +. ++.+.|++++||.+.+| + ||+++. +++++++++++|+
T Consensus 304 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~ 379 (383)
T 3kax_A 304 DHIP---TLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGC-PRSVLEEILNRLR 379 (383)
T ss_dssp HHCT---TCEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSS-CHHHHHHHHHHHH
T ss_pred hhCC---CceEecCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcC-CHHHHHHHHHHHH
Confidence 63 2 16778889999987743 44 44666666789999986 2 999997 8899999999999
Q ss_pred HHH
Q 012238 461 DSY 463 (467)
Q Consensus 461 ~~l 463 (467)
+++
T Consensus 380 ~~l 382 (383)
T 3kax_A 380 HTF 382 (383)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 45
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=4.4e-40 Score=334.06 Aligned_cols=347 Identities=13% Similarity=0.163 Sum_probs=269.3
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHh--------c--CCCCcCCCCcchHHHHHHHHHHHhCCCCcc--cccCc
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--------R--GENKEYLPIEGLAAFNKVTAELLFGADNSV--LKEQR 151 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~--------~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~--~~~~~ 151 (467)
++|+|+.+++ +..++.+.+++.+... . .....|.+..|..++|+++++++...+|.. +++++
T Consensus 37 ~~i~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~ 110 (428)
T 1iay_A 37 GVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPER 110 (428)
T ss_dssp SBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred ceeeeccccc------hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence 6889987654 3335678887775321 0 012578777889999999999987655544 56889
Q ss_pred eeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CC
Q 012238 152 VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP 227 (467)
Q Consensus 152 i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~ 227 (467)
|++ |+|+++++.++ +...+.+||+|+++.|+|..|...+ +..|++++.+|.++++++.+|++.+++.+++ ..
T Consensus 111 i~~--~~G~~~ai~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 186 (428)
T 1iay_A 111 VVM--AGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSN 186 (428)
T ss_dssp CEE--EEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEE--ccChHHHHHHH--HHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcC
Confidence 999 99999999997 4445679999999999999998755 4789999999985445678999999999874 12
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-------CCeEEEEe
Q 012238 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-------GMELLVAQ 300 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~ 300 (467)
.+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+... .++++++.
T Consensus 187 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~viv~~ 264 (428)
T 1iay_A 187 IKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCNKDLVHIVY 264 (428)
T ss_dssp CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEEE
T ss_pred CceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC--CccCHHHhccccccccCCCCcEEEEe
Confidence 3678888999999999999999999999999999999999999999776531 11122233333 47899999
Q ss_pred cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHH
Q 012238 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMM 380 (467)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~ 380 (467)
||||.||++|+|+||++ +.++++++. ++.... +.+.+.++|.++..+|++..+. .+++++.
T Consensus 265 s~sK~~g~~Glr~G~~~--~~~~~~~~~------------~~~~~~--~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~ 325 (428)
T 1iay_A 265 SLSKDMGLPGFRVGIIY--SFNDDVVNC------------ARKMSS--FGLVSTQTQYFLAAMLSDEKFV---DNFLRES 325 (428)
T ss_dssp ESTTTSSCGGGCEEEEE--ESCHHHHHH------------HHHHHT--TSCCCHHHHHHHHHHTTCHHHH---HHHHHHH
T ss_pred cchhhcCCCCceEEEEE--eCCHHHHHH------------HHHHHh--cccCCHHHHHHHHHHhcChHHH---HHHHHHH
Confidence 99999999999999996 457777776 444333 2357788899999999876532 2346788
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----------H-HHHHHHHHcccEEEeCC--------C-
Q 012238 381 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----------K-AQSDNMTNKWHVYMTKD--------G- 440 (467)
Q Consensus 381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----------~-~~~~~ll~~~gI~v~~g--------g- 440 (467)
+++++++++.+.+.|+ ++| +++..+.+|+|+|+.+. . ++.+++++++||.+.+| +
T Consensus 326 ~~~~~~~~~~l~~~L~-~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 326 AMRLGKRHKHFTNGLE-VVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHHHHHHH-HTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHHHHHHHHHH-hcC----CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 9999999999999999 776 46667778999988652 1 34566666679999875 2
Q ss_pred -eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 -RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 -Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++..+++++++++++|++++++.
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence 99998558899999999999998764
No 46
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=2.2e-40 Score=334.41 Aligned_cols=360 Identities=12% Similarity=0.116 Sum_probs=280.5
Q ss_pred cCCCCCCCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHH
Q 012238 60 EGVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE 137 (467)
Q Consensus 60 ~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~ 137 (467)
+++...+++++.++.+.+.+ ..+++.|+|+.|.+ ..+. ++.+.+++ +.+... ...|.+..|..++|+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~-~~~v~~a~-~~l~~~-~~~y~~~~g~~~l~~~la~ 90 (409)
T 2gb3_A 18 DRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP----DLKT-PEVFFERI-YENKPE-VVYYSHSAGIWELREAFAS 90 (409)
T ss_dssp HHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCC----CSCC-CTHHHHHH-HHTCCS-SCCCCCTTCCHHHHHHHHH
T ss_pred HHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCC----CCCC-CHHHHHHH-HHHhcC-CCCCCCCCCcHHHHHHHHH
Confidence 34445566666666654432 23457999999988 4343 67888998 777543 3678888899999999999
Q ss_pred HHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChh
Q 012238 138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE 217 (467)
Q Consensus 138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 217 (467)
++....|..+++++|++ |+||++++.++ +...+.+||+|+++.|+|..+...++..|++++.++.++++++.+ ++
T Consensus 91 ~~~~~~g~~~~~~~v~~--~~g~t~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~ 165 (409)
T 2gb3_A 91 YYKRRQRVDVKPENVLV--TNGGSEAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQ 165 (409)
T ss_dssp HHHHTSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CT
T ss_pred HHHHHhCCCCCHHHEEE--eCCHHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HH
Confidence 99877777777899999 99999999998 344467999999999999999999999999999999853234445 88
Q ss_pred hHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238 218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297 (467)
Q Consensus 218 ~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (467)
.+++.++ ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..+. +....++++
T Consensus 166 ~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~--~~~~~~~~i 237 (409)
T 2gb3_A 166 NLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA--LSIESDKVV 237 (409)
T ss_dssp TGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG--GGSCCTTEE
T ss_pred HHHHhhC---cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc--cccCCCCEE
Confidence 8888776 4678888999999999999999999999999999999999999999876531 1111 112235789
Q ss_pred EEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 298 ~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
++.|+||.+|++|+|+||++ +.++++++. +........ +++.+.+.++..+|+.. .+.+
T Consensus 238 ~~~s~sK~~g~~G~r~G~~~--~~~~~l~~~------------l~~~~~~~~-~~~~~~~~a~~~~l~~~------~~~~ 296 (409)
T 2gb3_A 238 VIDSVSKKFSACGARVGCLI--TRNEELISH------------AMKLAQGRL-APPLLEQIGSVGLLNLD------DSFF 296 (409)
T ss_dssp EEEESTTTTTCGGGCCEEEE--CSCHHHHHH------------HHHHHHHSC-CCCHHHHHHHHHHHTCC------HHHH
T ss_pred EEecchhccCCccceEEEEE--ECcHHHHHH------------HHHHHhccC-CCCHHHHHHHHHHHhcc------HHHH
Confidence 99999999999999999996 343377776 444444334 67888888888888653 2346
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCccc-ccCCcceEEecCC---CH-HHHHHHHHc-----ccEEEeCC--------
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL---NK-AQSDNMTNK-----WHVYMTKD-------- 439 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~-~~~~~g~f~~~~l---~~-~~~~~ll~~-----~gI~v~~g-------- 439 (467)
++.+++++++++.+.+.|+ ++| +.+ ..+.+|+|+|+.+ +. ++.++++++ +||.+.+|
T Consensus 297 ~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~ 371 (409)
T 2gb3_A 297 DFVRETYRERVETVLKKLE-EHG----LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPG 371 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT----CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HcC----ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCC
Confidence 7788899999999999999 776 466 6788899988754 34 446667666 59999864
Q ss_pred ---C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 440 ---G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 ---g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||+++. +++++++++++|+++++++
T Consensus 372 ~~~~~iRis~~~-~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 372 LGKKEIRIACVL-EKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp TTSSEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence 2 999994 8999999999999998754
No 47
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=6.3e-41 Score=340.71 Aligned_cols=335 Identities=15% Similarity=0.176 Sum_probs=262.8
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc----CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG 157 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t 157 (467)
++++|||++|++ .++. ++.|.+++.+.+.. .....|.+..|.++||+++++++.. +..+++++|++ |
T Consensus 55 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~--t 125 (432)
T 3ei9_A 55 DAQVISLGIGDT----TEPI-PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV--S 125 (432)
T ss_dssp TCCCEECSSCCC----CSCC-CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--E
T ss_pred CCCeEEccCCCC----CCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--C
Confidence 458999999987 4444 78888888887752 1235788888999999999999863 45566889999 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC------------CeEEeeeecCCCCCCChhhHHHHHHc
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYDPKTVGLDFEGMIADIKA 225 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~~~~~~~~d~~~l~~~l~~ 225 (467)
+|+++++.++ ...+.+||+|++++|+|..|...++..|. +++.++++++.++..|++.
T Consensus 126 ~G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 195 (432)
T 3ei9_A 126 DGAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------- 195 (432)
T ss_dssp SCHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-------
T ss_pred CChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-------
Confidence 9999999874 45578999999999999999999888774 6788888544444455443
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN 305 (467)
Q Consensus 226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 305 (467)
. ++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.++.. ..++..+....+++++++||||.
T Consensus 196 ~-~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~ 271 (432)
T 3ei9_A 196 V-GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPGAEEVAMETASFSNY 271 (432)
T ss_dssp C-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTTGGGTEEEEEESHHH
T ss_pred C-CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCCCCCeEEEEecchhc
Confidence 1 4566788889999999999999999999999999999999999999987632 11222222223578999999999
Q ss_pred cccCCCccceEEEecCCHHH--------HhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 306 LGLYAERIGAMNVVCSSSDL--------AARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 306 ~~~~G~RiG~~~~v~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
||++|+|+||++ .++++ ++. +.......+.+++.++|.++..++.+.. .+++
T Consensus 272 ~g~~G~r~G~~~---~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~ 331 (432)
T 3ei9_A 272 AGFTGVRLGWTV---IPKKLLYSDGFPVAKD------------FNRIICTCFNGASNISQAGALACLTPEG-----LEAM 331 (432)
T ss_dssp HCTTTTCCEEEE---CCTTCBCTTSCBHHHH------------HHHHHHHSCCCSCHHHHHHHHHHSSHHH-----HHHH
T ss_pred cCCcccceEEEE---EChHHhhcchHHHHHH------------HHHHhccccCCCCHHHHHHHHHHHhccc-----HHHH
Confidence 999999999996 55555 444 4444444456788888888888876432 2347
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC----HHHHHHHHHcccEEEeCC--------C--eEE
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----KAQSDNMTNKWHVYMTKD--------G--RIS 443 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----~~~~~~ll~~~gI~v~~g--------g--Ris 443 (467)
++++++++++++++.+.|+ ++| +++..+.+++|+|+++. .+++.++++++||.+.|| + |||
T Consensus 332 ~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis 406 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFT-SLG----YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS 406 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT----CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHH-HCC----ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE
Confidence 7889999999999999999 776 57777778889998662 356778888789999886 2 999
Q ss_pred eccCChhhHHHHHHHHHHHHHh
Q 012238 444 LAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 444 ~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
++. +++++++++++|++..+.
T Consensus 407 ~~~-~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 407 AFG-HRENILEACRRFKQLYKH 427 (432)
T ss_dssp CCS-CHHHHHHHHHHHHHHHTT
T ss_pred ecC-CHHHHHHHHHHHHHHhhh
Confidence 987 899999999999987654
No 48
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=4.8e-41 Score=341.11 Aligned_cols=348 Identities=14% Similarity=0.101 Sum_probs=262.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHH--HHHHhc--CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAE--NLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~--~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (467)
+.+|||+.|.| +...+| .++.+.++. .+.+.. .....|.+..|.++||+++|+++. +++++|++ |+
T Consensus 33 ~~~i~~~~G~p-~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~--t~ 102 (427)
T 3ppl_A 33 NLKLDLTRGKP-SSEQLD-FADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VPVEQVLA--GD 102 (427)
T ss_dssp CCCEECCCCSC-CHHHHH-TTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEE--CS
T ss_pred CceEecCCCCC-ChHHCC-CcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CCcceEEE--eC
Confidence 47899999988 211111 123466555 444432 124789888999999999999983 33789999 99
Q ss_pred CchhHHH--HHHHHHHHhC--C----------CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238 159 SGTGSLR--LAAALIERYF--P----------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224 (467)
Q Consensus 159 ggt~al~--l~~~~l~~~~--~----------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~ 224 (467)
|+++++. ++. ...+. | ||+|++++|+|..|...++..|++++.+|++++ ++|++.+++.++
T Consensus 103 G~~~al~~~~~~--~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~ 177 (427)
T 3ppl_A 103 ASSLNIMFDVIS--WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVK 177 (427)
T ss_dssp SCHHHHHHHHHH--HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTT
T ss_pred CcHHHHHHHHHH--HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHh
Confidence 9999994 652 33344 5 899999999999999999999999999999632 499999999985
Q ss_pred cCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCCCCCChhHHHHHH---hcCCeEEEE
Q 012238 225 AAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGSLDNDASSVRLFA---TRGMELLVA 299 (467)
Q Consensus 225 ~~~~~~~~i~-i~~p~NPTG~~~~~~~l~~l~~~~-~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ 299 (467)
. +++++++ +++||||||.+++.+++++|+++| ++||++||+||+|.++.++.......++..+. +..++++++
T Consensus 178 ~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (427)
T 3ppl_A 178 N--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAF 255 (427)
T ss_dssp S--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEE
T ss_pred c--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEE
Confidence 3 4566666 458999999999999999999999 99999999999999977653211111222221 245789999
Q ss_pred ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM 379 (467)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~ 379 (467)
+||||. +++|+|+||++ .++++++. +.........+++.+.|.++..+|.+.. .+.+++++
T Consensus 256 ~S~SK~-~~~G~r~G~~~---~~~~l~~~------------~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~ 316 (427)
T 3ppl_A 256 TSTSKI-TLAGAGVSFFL---TSAENRKW------------YTGHAGIRGIGPNKVNQLAHARYFGDAE---GVRAVMRK 316 (427)
T ss_dssp EESTTT-SCTTSSCEEEE---CCHHHHHH------------HHHHHHHHCSCCCHHHHHHHHHHHCSHH---HHHHHHHH
T ss_pred echhhc-cCcCccEEEEE---cCHHHHHH------------HHHHhhcccCCCCHHHHHHHHHHHhChh---hHHHHHHH
Confidence 999999 67999999995 78888877 5555444566788899999999998722 23455778
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC------------C--eE
Q 012238 380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD------------G--RI 442 (467)
Q Consensus 380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g------------g--Ri 442 (467)
.++.++++++.+.+.|.+.++.-+.+.+..|++|+|+|+.+. .+.+.++++++||.+.|| + ||
T Consensus 317 ~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ri 396 (427)
T 3ppl_A 317 HAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRL 396 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEE
Confidence 888888888888888762221001256677889999998663 445555566679999983 1 99
Q ss_pred EeccCChhhHHHHHHHHHHHHHhc
Q 012238 443 SLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 443 s~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
|++..+++++++++++|.++++++
T Consensus 397 s~~~~~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 397 APSLPPVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHH
Confidence 998777899999999999998753
No 49
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.1e-41 Score=343.30 Aligned_cols=360 Identities=13% Similarity=0.072 Sum_probs=275.6
Q ss_pred CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 80 ~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
..++++|||+.|.+ ..++ ++.+.+++.+.+..+....|.+..|.+++|+++++++...+|..+++++|++ |+|
T Consensus 41 ~~g~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~--t~g 113 (437)
T 3g0t_A 41 ATGTKFCRMEMGVP----GLPA-PQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVP--TVG 113 (437)
T ss_dssp HHTCCCEECCCCSC----CSCC-CHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESH
T ss_pred hcCCCEEeccCcCC----CCCC-CHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEE--eCC
Confidence 34568999999987 4443 7889999988876443377988889999999999999876677777899999 999
Q ss_pred chhHHHHHHHHHHHh--CCCC--EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 160 GTGSLRLAAALIERY--FPGA--KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 160 gt~al~l~~~~l~~~--~~gd--~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
+++++.++ +...+ .+|| +|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++. .+++++++
T Consensus 114 ~t~al~~~--~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~l 188 (437)
T 3g0t_A 114 SMQGCFVS--FLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT--GQFCSIIY 188 (437)
T ss_dssp HHHHHHHH--HHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT--TCCCEEEE
T ss_pred HHHHHHHH--HHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc--CCceEEEE
Confidence 99999998 44445 7999 99999999999999999999999999985 55677899999999943 56778888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCCh---hHH-HHHHhcCCeEEEEecCccCcccCCC
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA---SSV-RLFATRGMELLVAQSYSKNLGLYAE 311 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (467)
++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ... .++ ..+....++++++.|+||.++++|+
T Consensus 189 ~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 267 (437)
T 3g0t_A 189 SNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ 267 (437)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG
T ss_pred eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhccCCCCCcEEEEEcCccCCCCccc
Confidence 99999999999999999999999999999999999998877521 111 000 1222235789999999999999999
Q ss_pred ccceEEEecCCHHHHh-hhhhhhHHH------HHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238 312 RIGAMNVVCSSSDLAA-RCCEVAVIQ------VKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 384 (467)
Q Consensus 312 RiG~~~~v~~~~~~~~-~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~ 384 (467)
|+||++ .++++++ . .+..... ....+.........+++.+.+.++..+|++.. .|..++++.++++
T Consensus 268 r~G~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~ 340 (437)
T 3g0t_A 268 RIGVLM---ISGKLYERE-YPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN---DGEYNFRDSVIEY 340 (437)
T ss_dssp CCEEEE---ECHHHHHCB-CGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHH---TTSCCHHHHHHHH
T ss_pred eeEEEE---ECHHHhhhh-hhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcH---hHHHHHHHHHHHH
Confidence 999996 5666655 2 0000000 00002222222345677888888887775431 1222267888999
Q ss_pred HHHHHHHHHHhhhccCCCCCcccc-------cCCcceEEecCC---CHH-HHHHHHHcccEEEeCC--------C--eEE
Q 012238 385 KNVRQKLFDSLSAKDKSGKDWSFI-------LRQIGMFSFTGL---NKA-QSDNMTNKWHVYMTKD--------G--RIS 443 (467)
Q Consensus 385 ~~~r~~l~~~l~~~~g~~~~~~~~-------~~~~g~f~~~~l---~~~-~~~~ll~~~gI~v~~g--------g--Ris 443 (467)
+++++.+.+.|+ ++| +.+. ++.+++|+|+.+ +.+ +.+.|++ +||.+.++ + |||
T Consensus 341 ~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~iRis 414 (437)
T 3g0t_A 341 GRKARIMKKMFL-DNG----FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVR-YGMCAITLKTTGSKRNEAMRIC 414 (437)
T ss_dssp HHHHHHHHHHHH-TTT----EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHH-TTEECEESTTTTCCCTTCEEEE
T ss_pred HHHHHHHHHHHH-HcC----CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHH-cCeEEeeccccCCCCCCEEEEE
Confidence 999999999999 776 5666 437888998754 444 4556655 59999887 2 999
Q ss_pred eccCChhhHHHHHHHHHHHHHh
Q 012238 444 LAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 444 ~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
++..+++++++++++|++++++
T Consensus 415 ~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 415 TSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CSSSCGGGHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHHhc
Confidence 9977889999999999998764
No 50
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.6e-40 Score=337.20 Aligned_cols=349 Identities=13% Similarity=0.151 Sum_probs=270.3
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcc-cccCceeeeecC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQRVATVQGL 158 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~~~~i~~~~t~ 158 (467)
+++.|||+.|.+ +..+. +++.+.+++.+.+... ....|.+..|.+++|+++++++...+|.. +++++|++ |+
T Consensus 42 ~~~~idl~~g~~-~~~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~--t~ 116 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPETF--PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIF--TV 116 (425)
T ss_dssp STTCEECCCCSC-CGGGS--CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEE--EE
T ss_pred CCCceeCCCCCC-CcccC--CHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEE--ec
Confidence 457999999987 22222 3788899888877542 12578888899999999999985443444 56789999 99
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-----CCCcEEE
Q 012238 159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-----PGGSFIL 233 (467)
Q Consensus 159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~~~~i 233 (467)
|+++++.++ +...+.+||+|+++.|+|..+...++..|++++.+|.++ + ++|++.+++.+++. ..+++++
T Consensus 117 G~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~--~~d~~~l~~~l~~~~~~~~~~~~~~v 191 (425)
T 1vp4_A 117 GSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-D--GMDLNVLERKLSEFDKNGKIKQVKFI 191 (425)
T ss_dssp HHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T--EECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred cHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-C--CCCHHHHHHHHHhhhhcccCCCceEE
Confidence 999999997 344467999999999999999999999999999999853 2 49999999998741 1256676
Q ss_pred -EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCc
Q 012238 234 -LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER 312 (467)
Q Consensus 234 -~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 312 (467)
++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+ +..++++++.||||.++ +|+|
T Consensus 192 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r 267 (425)
T 1vp4_A 192 YVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKI-GGPERVVLLNTFSKVLA-PGLR 267 (425)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHH-HCTTTEEEEEESTTTTC-GGGC
T ss_pred EECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHHh-CCCCCEEEEeccccccc-cccc
Confidence 6899999999999999999999999999999999999999887532 11223233 34467899999999999 9999
Q ss_pred cceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 313 IGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF 392 (467)
Q Consensus 313 iG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~ 392 (467)
+||++ .++++++. +.........+++.+.|.++..+|++.. +.+++++.+++++++++.+.
T Consensus 268 ~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~ 328 (425)
T 1vp4_A 268 IGMVA---GSKEFIRK------------IVQAKQSADLCSPAITHRLAARYLERYD----LLEQLKPTIELYRRKRTVML 328 (425)
T ss_dssp EEEEE---CCHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHHHSC----HHHHTHHHHHHHHHHHHHHH
T ss_pred eEEEe---eCHHHHHH------------HHHHhhhhcCCCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHH
Confidence 99996 67888777 4433333334567788888888876432 24457788999999999999
Q ss_pred HHhhhccCCCC--CcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC----------C--eEEeccCChhhHH
Q 012238 393 DSLSAKDKSGK--DWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCE 453 (467)
Q Consensus 393 ~~l~~~~g~~~--~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~ 453 (467)
+.|+ +.. |+ ++.+..+.+|+|+|+.+. .++.+.++++ ||.+.+| + ||+++..++++++
T Consensus 329 ~~L~-~~~-~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~ 405 (425)
T 1vp4_A 329 NALE-EYF-SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIV 405 (425)
T ss_dssp HHHH-HHS-TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHH
T ss_pred HHHH-HhC-CCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHH
Confidence 9998 641 11 256667888999988552 3456777766 9999874 2 9999876789999
Q ss_pred HHHHHHHHHHHhc
Q 012238 454 YLADAIIDSYHNV 466 (467)
Q Consensus 454 ~~~~~l~~~l~~~ 466 (467)
+++++|+++++++
T Consensus 406 ~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 406 EGIKRLREVVLEY 418 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 51
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=1.5e-40 Score=332.83 Aligned_cols=344 Identities=12% Similarity=0.085 Sum_probs=270.8
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
.++|||+.|.+ ..+. ++.+.+++.+.+.... ..|.+. ..++++++++++...+|..+++++|++ |+|+++
T Consensus 27 ~~~i~~~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g~~~ 96 (391)
T 3dzz_A 27 EKELPMWIAEM----DFKI-APEIMASMEEKLKVAA-FGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASGVVP 96 (391)
T ss_dssp TTCEECCSSCC----SSCC-CHHHHHHHHHHHTTCC-CCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESCHHH
T ss_pred CCceeccccCC----CCCC-CHHHHHHHHHHHhcCc-CCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCCHHH
Confidence 48999999976 5554 8899999999886543 677655 689999999998876676677899999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++.++ +...+.+||+|+++.|+|..+...++..|++++.+|++ ++.++.+|++.+++.+++ ++++++++++||||
T Consensus 97 a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~np 172 (391)
T 3dzz_A 97 AISAM--VRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNP 172 (391)
T ss_dssp HHHHH--HHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTT
T ss_pred HHHHH--HHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCC
Confidence 99998 44456799999999999999999999999999999985 344556999999999974 47788889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCcccCCCccceEEEec
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (467)
||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..++++++.|+||.+|++|+|+||++ +
T Consensus 173 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~--~ 248 (391)
T 3dzz_A 173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAI--I 248 (391)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEE--C
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccchhheEEE--E
Confidence 99999999999999999999999999999999887531 1112211111 13578999999999999999999996 3
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhcc-CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLAR-PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK- 398 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~- 398 (467)
.++++++. +..... ....+++.+.+.++..+|... .+.+++.+++++++++.+.+.|+ +
T Consensus 249 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~ 309 (391)
T 3dzz_A 249 PNPDLRAR------------AEESFFLAGIGEPNLLAIPAAIAAYEEG------HDWLRELKQVLRDNFAYAREFLA-KE 309 (391)
T ss_dssp CSHHHHHH------------HHHHHHHHTCSSCCTTHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred CCHHHHHH------------HHHHHHhhccCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 45888777 433322 112345556666766666432 23467888999999999999998 7
Q ss_pred cCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHH
Q 012238 399 DKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDS 462 (467)
Q Consensus 399 ~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~ 462 (467)
++ ++.+..+.+++++|+.+ +. ++.+++++++||.+.+|. ||+++. +++++++++++|.++
T Consensus 310 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~ 385 (391)
T 3dzz_A 310 VP---EVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQG 385 (391)
T ss_dssp CT---TSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CC---CcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHH
Confidence 42 16778889999888643 44 445666666799999861 999996 899999999999999
Q ss_pred HHhcC
Q 012238 463 YHNVS 467 (467)
Q Consensus 463 l~~~~ 467 (467)
+++++
T Consensus 386 l~~~~ 390 (391)
T 3dzz_A 386 VLNLN 390 (391)
T ss_dssp HHTCC
T ss_pred HHHhh
Confidence 98763
No 52
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=9e-40 Score=329.40 Aligned_cols=363 Identities=17% Similarity=0.208 Sum_probs=275.7
Q ss_pred CCCcccchHHHhhc--CCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhC
Q 012238 66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFG 141 (467)
Q Consensus 66 ~~~~i~~~~~~~~~--~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~ 141 (467)
+++.+..+.+...+ ..+.+.|||+.|.+ +..++ +++.+.+++.+.+... ... |.+..|..++|+++++++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~idl~~g~~-~~~~~--~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~ 90 (407)
T 2zc0_A 15 KGSALADVMKKASELQKKGVKLISLAAGDP-DPELI--PRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKK 90 (407)
T ss_dssp CCCHHHHHHHHHHHHHHSSCCCEECCSCCC-CTTTS--CHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHhhhcccCCCCceEeCCCCCC-CchhC--CHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHH
Confidence 33444444443331 22337899999987 22222 3788898888877542 125 88888999999999999865
Q ss_pred CCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238 142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
.+|..+++++|++ |+|+++++.++ +...+.+||+|+++.|+|..+...++..|++++.+|.++ + ++|++.+++
T Consensus 91 ~~g~~~~~~~v~~--t~g~t~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~--~~d~~~l~~ 163 (407)
T 2zc0_A 91 YDHLEVSPENIVI--TIGGTGALDLL--GRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-D--GMRVDLLEE 163 (407)
T ss_dssp HSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-T--EECHHHHHH
T ss_pred hcCCCCCcceEEE--ecCHHHHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-C--CCCHHHHHH
Confidence 4555566889999 99999999998 333467999999999999999999999999999999853 2 499999999
Q ss_pred HHH----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238 222 DIK----AAPGGSFIL-LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296 (467)
Q Consensus 222 ~l~----~~~~~~~~i-~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (467)
.++ +. .+++++ ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ +..+++
T Consensus 164 ~l~~~~~~~-~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~~~~ 239 (407)
T 2zc0_A 164 KIKELKAKG-QKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKAL-DNEGRV 239 (407)
T ss_dssp HHHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGG-CSSCCE
T ss_pred HHHhhhccc-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhc-CCCCCE
Confidence 987 32 255665 6889999999999999999999999999999999999999877431 11112112 223578
Q ss_pred EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHH-H
Q 012238 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWK-A 375 (467)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~ 375 (467)
++++||||.++ +|+|+||++ .++++++. +.........+++.+.|.++..+|+... +. +
T Consensus 240 i~~~s~sK~~~-~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 299 (407)
T 2zc0_A 240 IVAGTLSKVLG-TGFRIGWII---AEGEILKK------------VLMQKQPIDFCAPAISQYIALEYLKRGY----FEKY 299 (407)
T ss_dssp EEEEESTTTTC-TTSCCEEEE---CCHHHHHH------------HHHHHTTTTSSSCHHHHHHHHHHHHTTH----HHHH
T ss_pred EEEcccccccC-CCcceEEEe---cCHHHHHH------------HHHHHHhhcCCCCHHHHHHHHHHHHcCC----chHH
Confidence 99999999999 999999996 67887777 5554444445667888888888887642 23 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCC----------C
Q 012238 376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G 440 (467)
Q Consensus 376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g 440 (467)
++++.+++++++++.+.+.|+ +.. |+ +.+..+.+|+|+|+.+ +. ++.+.+++++||.+.+| +
T Consensus 300 ~~~~~~~~~~~~~~~l~~~L~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~ 376 (407)
T 2zc0_A 300 HLEGALLGYKEKRDIMLKALE-NHL-PN-AEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKN 376 (407)
T ss_dssp TTTTHHHHHHHHHHHHHHHHH-HHC-TT-SCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhC-CC-CEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCC
Confidence 467888999999999999998 641 11 5666778888988755 33 45666666569999875 2
Q ss_pred --eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 --RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 --Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++..+++++++++++|+++++++
T Consensus 377 ~iRis~~~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 377 AIRLNFSRPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998767899999999999998764
No 53
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=1.5e-40 Score=332.30 Aligned_cols=333 Identities=18% Similarity=0.153 Sum_probs=263.4
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
++.|||+.|.+ ..+. ++.+.+++.+.+.. ...|.+..|.+++|+++++++... +++|++ |+||++
T Consensus 25 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~~~~------~~~v~~--~~g~~~ 89 (381)
T 1v2d_A 25 LGAVNLGQGFP----SNPP-PPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFAVE------PESVVV--TSGATE 89 (381)
T ss_dssp HTCEECCCCSC----SSCC-CHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHTSC------GGGEEE--ESSHHH
T ss_pred CCeEEecCCCC----CCCC-CHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhcCCC------hhhEEE--cCChHH
Confidence 46899999987 3443 78899999888754 357887779999999999996433 678988 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec-CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++.++ +...+.+||+|++++|+|..+...++..|++++.++.+. ++++.+|++.+++.++ ++++++++++|+||
T Consensus 90 a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~np 164 (381)
T 1v2d_A 90 ALYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPMNP 164 (381)
T ss_dssp HHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSCTT
T ss_pred HHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC---cCCEEEEECCCCCC
Confidence 99998 334467999999999999999999999999999999851 1346799999998886 56788888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (467)
||.+++.+++++|+++|++||+++|+||+|.++.++.. ..++..+ ..+.++++.|+||.++++|+|+||++ .
T Consensus 165 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~---~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~---~ 236 (381)
T 1v2d_A 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER---PRRLREF--APERTFTVGSAGKRLEATGYRVGWIV---G 236 (381)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEE---C
T ss_pred CCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHh--cCCCEEEEeechhhcCCcccceEEEE---e
Confidence 99999999999999999999999999999999876321 1122222 34678999999999999999999996 6
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 401 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~ 401 (467)
++++++. +.........+++.+.|.++..+|.... +.+++++.+++++++++++.+.|+ +.|
T Consensus 237 ~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~L~-~~g- 298 (381)
T 1v2d_A 237 PKEFMPR------------LAGMRQWTSFSAPTPLQAGVAEALKLAR----REGFYEALREGYRRRRDLLAGGLR-AMG- 298 (381)
T ss_dssp CTTTHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHH-HTT-
T ss_pred CHHHHHH------------HHHHHhhcccCCCcHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHHHHHHHHHH-HCC-
Confidence 7777776 4333332234567777777777765321 123467888999999999999999 766
Q ss_pred CCCcccccCCcceEEecCCCH-HHHHHHHHcccEEEeCC----------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 402 GKDWSFILRQIGMFSFTGLNK-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 402 ~~~~~~~~~~~g~f~~~~l~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+++..+.+|+|+|+.+.. + +.++++++||.+.+| + ||+++. +++++++++++|.+++++.
T Consensus 299 ---~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 299 ---LRVYVPEGTYFLMAELPGWD-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp ---CCEECCSBSSEEEEECTTCC-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC---
T ss_pred ---CEecCCCcceEEEEecChHh-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 577778888899886532 3 666777789999874 2 999998 8999999999999988654
No 54
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.6e-40 Score=336.75 Aligned_cols=357 Identities=16% Similarity=0.099 Sum_probs=264.8
Q ss_pred ccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHH--hcC-CCCcCCCCcchHHHHHHHHHHHhCCCCcc
Q 012238 70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERG-ENKEYLPIEGLAAFNKVTAELLFGADNSV 146 (467)
Q Consensus 70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~--~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~ 146 (467)
+.....++... ..+|||+.|.| +...+|+ ++.+++++.+.+ ..+ ....|.+..|.++||+++|+++.
T Consensus 21 ~~~~~~~l~~~--~~~i~l~~g~~-~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------ 90 (422)
T 3d6k_A 21 VTAKYAELKAK--NLSLDLTRGKP-SAEQLDL-SNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------ 90 (422)
T ss_dssp HHHHHHHHHHT--TCCEECCCCSC-CHHHHHT-TGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------
T ss_pred HHHHHHHHhcc--CCeEeCCCCCC-ChhhCCC-cHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------
Confidence 44444445432 25899999998 2111443 556776665442 121 24689999999999999999973
Q ss_pred cccCceeeeecCCchhHH--HHHHHHHHHhCC------------CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCC
Q 012238 147 LKEQRVATVQGLSGTGSL--RLAAALIERYFP------------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTV 212 (467)
Q Consensus 147 ~~~~~i~~~~t~ggt~al--~l~~~~l~~~~~------------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~ 212 (467)
+++++|++ |+|+++++ .++... ...+ +|+|+++.|+|..|...++..|++++.+|++++
T Consensus 91 ~~~~~i~~--t~G~~~al~l~~~~~~--l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~--- 163 (422)
T 3d6k_A 91 LPADLVVA--QDGSSLNIMFDLISWS--YTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE--- 163 (422)
T ss_dssp CCGGGEEE--CSSCHHHHHHHHHHHH--HHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---
T ss_pred CChhHEEE--ecchHHHHHHHHHHHH--hcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---
Confidence 34789999 99999997 454222 2234 348999999999999999999999999999632
Q ss_pred CCChhhHHHHHHcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCCC--CCCCCCCCChhHHHH
Q 012238 213 GLDFEGMIADIKAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQG--FASGSLDNDASSVRL 288 (467)
Q Consensus 213 ~~d~~~l~~~l~~~~~~~~~i~-i~~p~NPTG~~~~~~~l~~l~~~~~-~~~~~li~Deay~~--~~~~~~~~~~~~~~~ 288 (467)
++|++.+++.+++ .++++++ +++||||||.+++.+++++|+++|+ +||++||+||+|.. |.+++ ....++..
T Consensus 164 g~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~ 239 (422)
T 3d6k_A 164 GPDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF--PIVHNVIE 239 (422)
T ss_dssp EECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC--CCCCCHHH
T ss_pred CCCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC--CCCcChhh
Confidence 4999999999973 3566666 7999999999999999999999999 99999999999985 54331 11122222
Q ss_pred H---HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC
Q 012238 289 F---ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG 365 (467)
Q Consensus 289 ~---~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 365 (467)
+ .+..+++++++||||. +++|+|+||++ .++++++. +.........+++.++|.++..+|+
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~---~~~~l~~~------------l~~~~~~~~~~~~~~~q~a~~~~l~ 303 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKI-THAGSGVSFFA---SSKENIEW------------YASHANVRGIGPNKLNQLAHAQFFG 303 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTT-SCTTSSCEEEE---CCHHHHHH------------HHHHHHHHCSCCCHHHHHHHHHHHC
T ss_pred HhhccCCCCcEEEEcChhhh-cCcccceEEEE---eCHHHHHH------------HHHHHHhhcCCCCHHHHHHHHHHHh
Confidence 2 2345689999999999 67999999996 77888877 5555444456788899999999998
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCC---
Q 012238 366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKD--- 439 (467)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~g--- 439 (467)
+. +.|.+++++.++.++++++.+.+.|++.++--+.+.+..|++|+|+|+.+ +.+.+.++++++||.+.+|
T Consensus 304 ~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~ 380 (422)
T 3d6k_A 304 DV---AGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSS 380 (422)
T ss_dssp SH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTT
T ss_pred Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccc
Confidence 72 12355678888999999998888886211100114556788999999865 3555666777789999882
Q ss_pred ---------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 440 ---------G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 ---------g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ |||++..+++++++++++|+++++++
T Consensus 381 f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 381 FPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp SGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 99998558899999999999988753
No 55
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=3.2e-40 Score=330.55 Aligned_cols=340 Identities=12% Similarity=0.073 Sum_probs=268.1
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.++|+|+.|.+ ..++ ++.+.+++.+.+.... ..|.+ +..++++++++++....|..+++++|++ |+|++
T Consensus 31 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~~ 100 (391)
T 4dq6_A 31 TNDLLPMWVADM----DFKA-APCIIDSLKNRLEQEI-YGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGVI 100 (391)
T ss_dssp CSCSEECCSSSC----SSCC-CHHHHHHHHHHHTTCC-CCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred CCCceeccccCC----CCCC-CHHHHHHHHHHHhCCC-CCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCChH
Confidence 458999999976 5554 7899999999886543 56654 5689999999998776666667889999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee--cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY--DPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
+++.++ +...+.+||+|+++.|+|..+...++..|++++.+|++ ++.++.+|++.+++.++ + ++++++++|+
T Consensus 101 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~-~~~v~i~~p~ 174 (391)
T 4dq6_A 101 PAISLL--INELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK---D-VKLFILCNPH 174 (391)
T ss_dssp HHHHHH--HHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT---T-EEEEEEESSB
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh---c-CCEEEEECCC
Confidence 999998 44446799999999999999999999999999999986 34456799999999997 3 7889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEecCccCcccCCCccceEEE
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNV 318 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (467)
||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+. +..++++++.|+||.+|++|+|+||++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~- 251 (391)
T 4dq6_A 175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV- 251 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE-
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcCccccCcEEEEEechhhccCcccceEEEE-
Confidence 9999999999999999999999999999999999887532 111111111 113578999999999999999999996
Q ss_pred ecCCHHHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012238 319 VCSSSDLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSA 397 (467)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~ 397 (467)
+.++++++. +...... ...+++.+++.++..+|.+. .+.+++.+++++++++.+.+.|+
T Consensus 252 -~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~- 311 (391)
T 4dq6_A 252 -LPDEKDYKL------------LDDAFTRIDIKRNNCFSLVATEASYNNG------ESWLESFLEYLESNIDFAIKYIN- 311 (391)
T ss_dssp -CCSHHHHHH------------HHHHHHHTTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -eCCHHHHHH------------HHHHHHhhcCCCCCHHHHHHHHHHHhch------HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 455577776 4433222 23467777777777766532 23367888999999999999998
Q ss_pred c-cCCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHH
Q 012238 398 K-DKSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAII 460 (467)
Q Consensus 398 ~-~g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~ 460 (467)
+ ++ .+.+..+++++++|+.+ +. ++.+.+++++||.+.+| + ||+++. +++++++++++|+
T Consensus 312 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~ 387 (391)
T 4dq6_A 312 ENMP---KLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIK 387 (391)
T ss_dssp HHCT---TSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHH
T ss_pred hhCC---CCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHH
Confidence 6 32 16788899999988744 33 44666666569999885 2 999996 8899999999999
Q ss_pred HHHH
Q 012238 461 DSYH 464 (467)
Q Consensus 461 ~~l~ 464 (467)
++++
T Consensus 388 ~~l~ 391 (391)
T 4dq6_A 388 NAIN 391 (391)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8863
No 56
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=2.8e-40 Score=332.23 Aligned_cols=343 Identities=12% Similarity=0.105 Sum_probs=267.0
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
+++|||+.|.+ +.++ ++.+.+++.+.+... ...|.+. ..++|+++++++....|..+++++|++ |+|+++
T Consensus 31 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~~ 100 (399)
T 1c7n_A 31 NEVVPLSVADM----EFKN-PPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVVP 100 (399)
T ss_dssp TTCCCCCSSSC----SSCC-CHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHHH
T ss_pred CCceeeeecCC----CCCC-CHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHHH
Confidence 47899999976 4443 788999998887543 3678654 899999999998654455556889999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++.++ +...+.+||+|+++.|+|..+...++..|++++.+|.++++ ++.+|++.+++.+++ .+++++++++||||
T Consensus 101 a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 176 (399)
T 1c7n_A 101 AVFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNP 176 (399)
T ss_dssp HHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTT
T ss_pred HHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCC
Confidence 99998 34446789999999999999999999999999999885222 356999999999974 46778888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCcccCCCccceEEEec
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (467)
||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..++++++.|+||.++++|+|+||++ +
T Consensus 177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~ 252 (399)
T 1c7n_A 177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII--I 252 (399)
T ss_dssp TTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE--C
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCccccCcEEEEEeChhhccccchheEEEE--E
Confidence 99999999999999999999999999999999887531 1111211111 13578999999999999999999996 4
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK- 398 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~- 398 (467)
.++++++. +....... +.+++.+++.++..+|.+. .+.+++.+++++++++.+.+.|+ +
T Consensus 253 ~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~ 313 (399)
T 1c7n_A 253 KNPDIRER------------FTKSRDATSGMPFTTLGYKACEICYKEC------GKWLDGCIKVIDKNQRIVKDFFE-VN 313 (399)
T ss_dssp CCHHHHHH------------HHHHHHHTTCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred CCHHHHHH------------HHHHHhhcccCCCCHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 45677776 44433333 2356788888877777532 23467888999999999999998 6
Q ss_pred cCCCCCcccccCCcceEEecCC-----CHH-HHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238 399 DKSGKDWSFILRQIGMFSFTGL-----NKA-QSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS 462 (467)
Q Consensus 399 ~g~~~~~~~~~~~~g~f~~~~l-----~~~-~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~ 462 (467)
++ + +.+..+.+++++|+.+ +.+ +.+.+++++||.+.+| + ||+++. .++++++++++|.++
T Consensus 314 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 389 (399)
T 1c7n_A 314 HP--E-IKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKA 389 (399)
T ss_dssp CT--T-SBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CC--C-CeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHH
Confidence 52 1 5777888999888644 343 4566665679999875 2 999998 588999999999999
Q ss_pred HHhc
Q 012238 463 YHNV 466 (467)
Q Consensus 463 l~~~ 466 (467)
++++
T Consensus 390 l~~~ 393 (399)
T 1c7n_A 390 LKDL 393 (399)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 57
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=4.9e-39 Score=317.83 Aligned_cols=327 Identities=17% Similarity=0.197 Sum_probs=263.3
Q ss_pred CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
.++++|||+.|.+ ..++ ++.+++++.+.+.. ...| |..+.+++|+++++++.. ++++|++ |+|+
T Consensus 14 ~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~~------~~~~i~~--~~g~ 77 (354)
T 3ly1_A 14 STDNPIRINFNEN----PLGM-SPKAQAAARDAVVK--ANRY-AKNEILMLGNKLAAHHQV------EAPSILL--TAGS 77 (354)
T ss_dssp CSSSCEECSSCCC----SSCC-CHHHHHHHHHTGGG--TTSC-CHHHHHHHHHHHHHHTTS------CGGGEEE--ESHH
T ss_pred CCCceEEccCCCC----CCCC-CHHHHHHHHHHHhh--CcCC-CCCchHHHHHHHHHHhCC------ChHHEEE--eCCh
Confidence 4468999999976 4544 78999999988764 3677 677899999999999742 3789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (467)
Q Consensus 161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N 240 (467)
++++.++ +...+.+||+|+++.|+|..+...++..|++++.++.+ .++++|++.+++.+++. ++++++++++|||
T Consensus 78 ~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~n 152 (354)
T 3ly1_A 78 SEGIRAA--IEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML--DNWAFDIEGLKAAVAAY-SGPSIVYLVNPNN 152 (354)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHHHTC-SSCEEEEEESSCT
T ss_pred HHHHHHH--HHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhccC-CCCCEEEEeCCCC
Confidence 9999998 34446799999999999999999999999999999984 35889999999999842 3678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC-CeEEEEecCccCcccCCCccceEEEe
Q 012238 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG-MELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
|||.+++.+++.+|+++| ++|+++|+||+|.++.++.. ..+........ +++++++||||.+|++|+|+||++
T Consensus 153 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-- 226 (354)
T 3ly1_A 153 PTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR---FRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAV-- 226 (354)
T ss_dssp TTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT---CCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEE--
T ss_pred CcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc---cCCHHHHhhhcCCCEEEEeeChhhccChhhhheeee--
Confidence 999999999999999999 89999999999998887531 11222333444 789999999999999999999996
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
.++++++. +...... .+++.+.+.++..+|++. +.+++.+++++++++++.+.|+ ++
T Consensus 227 -~~~~~~~~------------~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~ 283 (354)
T 3ly1_A 227 -AHPTVIAL------------MGRYVAG--EKINFSGVDAALASMNDS-------AFITYSKKSNDVSRQILLKALE-DL 283 (354)
T ss_dssp -CCHHHHHH------------HGGGTTC--SCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred -cCHHHHHH------------HHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-HC
Confidence 68887777 6665554 467788888888888864 2367888999999999999999 77
Q ss_pred CCCCCcccccCCcceEEecCC--CHHHHHHHHHcccEEEeCC------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 400 KSGKDWSFILRQIGMFSFTGL--NKAQSDNMTNKWHVYMTKD------G--RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 400 g~~~~~~~~~~~~g~f~~~~l--~~~~~~~ll~~~gI~v~~g------g--Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
+ +.+.++ .|.|+|+.+ +.+.+.+.+.++||.+. | + ||+++ +++++++++++|++++++
T Consensus 284 ~----~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 284 K----LPYLPS-EGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp T----CCBCCC-CSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred C----CeECCC-CceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 6 455555 455788766 34444444445799988 3 2 99987 578999999999999875
No 58
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=3.8e-39 Score=320.06 Aligned_cols=339 Identities=12% Similarity=0.065 Sum_probs=266.0
Q ss_pred CCCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCC
Q 012238 65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN 144 (467)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~ 144 (467)
.+...+..+...+. .+++|+|+.|++ .+++ ++.+++++.+.+.. ...|.+..+ .++|+++++++..
T Consensus 15 ~~~~~~~~~~~~~~---~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~~--- 80 (365)
T 3get_A 15 EPGKDIEVIAKEYG---VKEVIKLASNEN----PFGT-PPKAIECLRQNANK--AHLYPDDSM-IELKSTLAQKYKV--- 80 (365)
T ss_dssp CCCCCHHHHHHHTT---CSCCEECSSCCC----TTCS-CHHHHHHHHHHGGG--TTSCCCTTC-HHHHHHHHHHHTC---
T ss_pred CCCCCHHHHHHhcC---CCceEEecCCCC----CCCC-CHHHHHHHHHHHHh--hccCCCCCh-HHHHHHHHHHhCC---
Confidence 34444444444433 258999999987 4543 78999999988763 367866666 8999999999742
Q ss_pred cccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238 145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224 (467)
Q Consensus 145 ~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~ 224 (467)
++++|++ |+|+++++.++ +...+.+||+|+++.|+|..+...++..|++++.+++ +++++ +|++.+++.++
T Consensus 81 ---~~~~v~~--~~g~~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~ 151 (365)
T 3get_A 81 ---QNENIII--GAGSDQVIEFA--IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHK 151 (365)
T ss_dssp ---CGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTT
T ss_pred ---CcceEEE--CCCHHHHHHHH--HHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhC
Confidence 3789999 99999999998 4445679999999999999999999999999999998 34567 99999999997
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEecC
Q 012238 225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSY 302 (467)
Q Consensus 225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~ 302 (467)
++++++++++||||||.+++.+++.+|+++| ++|+++|+||+|.++.+ .+. ...+.....+..+++++++|+
T Consensus 152 ---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~ 225 (365)
T 3get_A 152 ---DEIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTF 225 (365)
T ss_dssp ---TTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEES
T ss_pred ---CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeec
Confidence 6788999999999999999999999999988 57999999999998773 211 111222333556789999999
Q ss_pred ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 012238 303 SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAG 382 (467)
Q Consensus 303 SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~ 382 (467)
||.+|++|+|+||++ .++++++. +...... .+++.+.+.++..+|++. +++++.++
T Consensus 226 sK~~~~~G~r~G~~~---~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~ 281 (365)
T 3get_A 226 SKLYGLGGLRIGYGI---ANANIISA------------FYKLRAP--FNVSNLALKAAVAAMDDD-------EFTEKTLE 281 (365)
T ss_dssp SSTTSCTTTCCEEEE---ECHHHHHH------------HHHHSCT--TCSCHHHHHHHHHHHTCH-------HHHHHHHH
T ss_pred chHhcCcchheEEEE---cCHHHHHH------------HHHhcCC--CCcCHHHHHHHHHHhCCH-------HHHHHHHH
Confidence 999999999999996 58888777 5555443 357888888888888864 33678889
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC-------eEEeccCChhhH
Q 012238 383 RIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG-------RISLAGLSLAKC 452 (467)
Q Consensus 383 ~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg-------Ris~~~~~~~~i 452 (467)
+++++++.+.+.|+ ++| +.+.++.+ .|+|+.+ +.+.+.+.+.++||.+.+|+ ||+++ +++++
T Consensus 282 ~~~~~~~~l~~~l~-~~g----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~--~~~~i 353 (365)
T 3get_A 282 NNFSQMELYKEFAK-KHN----IKIIDSYT-NFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG--TSYEN 353 (365)
T ss_dssp HHHHHHHHHHHHHH-HTT----CEECCCSS-SEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC--CHHHH
T ss_pred HHHHHHHHHHHHHH-hCC----CEECCCCC-eEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC--CHHHH
Confidence 99999999999999 776 46665655 4678755 44444444445699999872 99988 67999
Q ss_pred HHHHHHHHHHHH
Q 012238 453 EYLADAIIDSYH 464 (467)
Q Consensus 453 ~~~~~~l~~~l~ 464 (467)
++++++|+++++
T Consensus 354 ~~l~~~l~~~l~ 365 (365)
T 3get_A 354 EKFFTEFDKILR 365 (365)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
No 59
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=7.6e-40 Score=331.76 Aligned_cols=348 Identities=15% Similarity=0.086 Sum_probs=262.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHH--HHHhcC-CCCcC-CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAEN--LMLERG-ENKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~--~~~~~~-~~~~Y-~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (467)
...|||+.|.| +...+|. ++.+.+++. +.+..+ ....| .+..|.++||+++++++. +++++|++ |+
T Consensus 25 ~~~i~l~~g~p-~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~--t~ 94 (423)
T 3ez1_A 25 GLNLNMQRGQP-ADADFDL-SNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLV--WN 94 (423)
T ss_dssp TCCEESCCCCC-CHHHHHT-TGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEE--CS
T ss_pred CceEecCCCCC-ChHhCCC-cHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEE--eC
Confidence 46899999998 1111333 556777764 443321 23679 888999999999999973 23789999 99
Q ss_pred CchhHHH--HHHHHHHHhC--C---------CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc
Q 012238 159 SGTGSLR--LAAALIERYF--P---------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA 225 (467)
Q Consensus 159 ggt~al~--l~~~~l~~~~--~---------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~ 225 (467)
|++++++ ++ +...+. | ||+|+++.|+|..|...++..|++++.+|++++ ++|++.+++.+++
T Consensus 95 G~~~al~~~~~--~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~ 169 (423)
T 3ez1_A 95 NSSLELQGLVL--TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGT 169 (423)
T ss_dssp SCHHHHHHHHH--HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHS
T ss_pred CcHHHHHHHHH--HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhh
Confidence 9999997 65 334455 7 599999999999999999999999999999642 5999999999963
Q ss_pred CCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCCeeEEeccCCCCCCCC-CCCChhHHHHH---HhcCCeEEEE
Q 012238 226 APGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGS-LDNDASSVRLF---ATRGMELLVA 299 (467)
Q Consensus 226 ~~~~~~~i~-i~~p~NPTG~~~~~~~l~~l~~~~-~~~~~~li~Deay~~~~~~~-~~~~~~~~~~~---~~~~~~~i~~ 299 (467)
. +++++++ +++||||||.+++.+++++|+++| ++||++||+||+|..+.+.. ......++..+ .+..++++++
T Consensus 170 ~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 170 D-PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp C-TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred C-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 2 4566664 568999999999999999999999 99999999999999654432 10111112122 2345789999
Q ss_pred ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCC--hhhHHHHHHHH
Q 012238 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGN--PALFDEWKAEM 377 (467)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~~l 377 (467)
+||||. +++|+|+||++ .++++++. +.........+++.+.|.++..+|.+ ..+ .+++
T Consensus 249 ~S~sK~-~~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~----~~~~ 308 (423)
T 3ez1_A 249 ASTSKI-TFAGAGLGFVA---SSEDNIRW------------LSKYLGAQSIGPNKVEQARHVKFLTEYPGGL----EGLM 308 (423)
T ss_dssp EESTTT-SCSSSSCEEEE---ECHHHHHH------------HHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH----HHHH
T ss_pred eCchhh-ccCCcceEEEE---eCHHHHHH------------HHHHHhhhccCCCHHHHHHHHHHHHhccchH----HHHH
Confidence 999999 57999999996 77888777 55555555667888999998888875 333 4556
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCC-CcccccCCcceEEecCC---CHHHHHHHHHcccEEEeC-C-----------C-
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKDKSGK-DWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTK-D-----------G- 440 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~g~~~-~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~-g-----------g- 440 (467)
++.++.++++++.+.+.|.+.++--+ .+.+..|.+|+|+|+.+ +.+.+.++++++||.+.+ | +
T Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~ 388 (423)
T 3ez1_A 309 RDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRN 388 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCe
Confidence 77778888888877777762222101 14666788999999865 456666667778999998 2 1
Q ss_pred -eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 -RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 -Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++..+++++++++++|.++++++
T Consensus 389 iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 389 LRLAPTRPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998668899999999999998753
No 60
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=5.1e-39 Score=322.96 Aligned_cols=341 Identities=17% Similarity=0.177 Sum_probs=263.9
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
++++|||+.|.+ +..+. +++.+.+++.+.+... ....|.+..|..++|+++++++. +++++|++ |+|
T Consensus 31 ~~~~i~l~~g~~-~~~~~--~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g------~~~~~v~~--~~g 99 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELF--PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLI--TTG 99 (397)
T ss_dssp STTCEEESSCCC-CGGGC--CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT------SCGGGEEE--ESH
T ss_pred CCCceecCCCCC-CchhC--CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC------CChhhEEE--ecc
Confidence 457999999986 22222 3678888888776431 12578777899999999999983 33789999 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEE-EeCCC
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL-LHGCA 238 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i-~i~~p 238 (467)
+++++.++ +...+.+||+|+++.|+|..+...++..|++++.+|.++ + ++|++.+++.+++ .+++++ ++++|
T Consensus 100 ~~~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~--~~d~~~l~~~l~~--~~~~~v~~~~~~ 172 (397)
T 2zyj_A 100 SQQALDLV--GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-E--GPDLDALEEVLKR--ERPRFLYLIPSF 172 (397)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-T--EECHHHHHHHHHH--CCCSCEEECCBS
T ss_pred HHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-C--CCCHHHHHHHHhh--cCCeEEEECCCC
Confidence 99999997 333467999999999999999999999999999999853 2 4999999999975 244454 67999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc--CCeEEEEecCccCcccCCCccceE
Q 012238 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--GMELLVAQSYSKNLGLYAERIGAM 316 (467)
Q Consensus 239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~ 316 (467)
|||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+... .++++++.|+||.++ +|+|+||+
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 249 (397)
T 2zyj_A 173 QNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFA 249 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEE
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhhCcccCCCeEEEEeccccccc-ccceeEEE
Confidence 99999999999999999999999999999999999887431 11223233211 167899999999999 99999999
Q ss_pred EEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238 317 NVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 396 (467)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~ 396 (467)
+ .++++++. +.........+.+.+.|.++..+|++.. | +++++.+++++++++.+.+.|+
T Consensus 250 ~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~~~l~~~L~ 309 (397)
T 2zyj_A 250 V---AHPEALQK------------LVQAKQGADLHTPMLNQMLVHELLKEGF----S-ERLERVRRVYREKAQAMLHALD 309 (397)
T ss_dssp E---CCHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHTTTH----H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred e---cCHHHHHH------------HHHHHHhhcCCCCHHHHHHHHHHHHhCC----H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 6 67887777 4433333334567888888888888652 2 4477888999999999999998
Q ss_pred hccCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCC----------C--eEEeccCChhhHHHHHHHH
Q 012238 397 AKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKD----------G--RISLAGLSLAKCEYLADAI 459 (467)
Q Consensus 397 ~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~g----------g--Ris~~~~~~~~i~~~~~~l 459 (467)
+. +|.++.+..+.+|+|+|+.+ +. ++.+.++++ ||.+.+| + ||+++..+++++++++++|
T Consensus 310 -~~-~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l 386 (397)
T 2zyj_A 310 -RE-VPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386 (397)
T ss_dssp -HH-SCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHH
T ss_pred -HH-CCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 64 11115666778899998754 33 446666665 9999874 2 9999886789999999999
Q ss_pred HHHHHhc
Q 012238 460 IDSYHNV 466 (467)
Q Consensus 460 ~~~l~~~ 466 (467)
.++++++
T Consensus 387 ~~~l~~~ 393 (397)
T 2zyj_A 387 GRALKGL 393 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 61
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=1.5e-39 Score=329.54 Aligned_cols=342 Identities=15% Similarity=0.076 Sum_probs=271.5
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.|||++|.+ .++. ++.+.+++.+.+.... ..|.+. ..++++++++++....+..+++++|++ |+|++
T Consensus 60 g~~~i~~~~~~~----~~~~-~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~~ 129 (421)
T 3l8a_A 60 NPELLQMWVADM----DFLP-VPEIKEAIINYGREHI-FGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILF--IDGVV 129 (421)
T ss_dssp CTTCEECCSSCC----CSCC-CHHHHHHHHHHHHHCC-SSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHH
T ss_pred CCCeeecccCCC----CCCC-CHHHHHHHHHHHhcCC-cCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--cCCHH
Confidence 468999999976 5554 8899999998886543 667554 378999999998776676677889999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N 240 (467)
+|++++ +.....+||+|+++.|+|..+...++..|.+++.+|+. ++.++.+|++.+++.+++ ++++++++++|||
T Consensus 130 ea~~~a--~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~n 205 (421)
T 3l8a_A 130 PAISIA--LQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHN 205 (421)
T ss_dssp HHHHHH--HHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBT
T ss_pred HHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCC
Confidence 999998 33446799999999999999999999999999999985 345567899999999974 4788899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeEEEEecCccCcccCCCccceEEEe
Q 012238 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
|||.+++.+++++|+++|++||+++|+||+|.++.+++.. ..++..+. +..++++++.|+||.++++|+|+||++
T Consensus 206 ptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~-- 281 (421)
T 3l8a_A 206 PGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT--HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAI-- 281 (421)
T ss_dssp TTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEE--
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CccHHHcCchhcCcEEEEEeChhhccCchhheEeEE--
Confidence 9999999999999999999999999999999999875321 11111111 123578999999999999999999996
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHhhc-cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKRLA-RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK 398 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~ 398 (467)
+.++++++. +.... ...+.+++.+++.++..++... ++.+++.+++++++++++.+.|+ +
T Consensus 282 ~~~~~l~~~------------~~~~~~~~~~~~~n~~~~~a~~aal~~~------~~~~~~~~~~~~~~~~~l~~~L~-~ 342 (421)
T 3l8a_A 282 IQNESLRRK------------FQYRQLANNQHEVPTVGMIATQAAFQYG------KPWLEELKTVIEGNIKLVIKELE-A 342 (421)
T ss_dssp CCSHHHHHH------------HHHHHHHTTCSCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cCCHHHHHH------------HHHHHHhcccCCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 344887776 44333 2224467777887877776532 23367888999999999999998 7
Q ss_pred cCCCCCcccccCCcceEEecCC-----C-HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238 399 DKSGKDWSFILRQIGMFSFTGL-----N-KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS 462 (467)
Q Consensus 399 ~g~~~~~~~~~~~~g~f~~~~l-----~-~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~ 462 (467)
+. + +.+..++++++.|+.+ + .++.+.+++++||.+.+| + ||+++. +++++++++++|+++
T Consensus 343 ~~--~-i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~ 418 (421)
T 3l8a_A 343 KT--K-IKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISV 418 (421)
T ss_dssp HC--S-CEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CC--C-ceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHH
Confidence 52 1 6788899999988754 2 356777777789999885 2 999996 899999999999998
Q ss_pred HH
Q 012238 463 YH 464 (467)
Q Consensus 463 l~ 464 (467)
++
T Consensus 419 l~ 420 (421)
T 3l8a_A 419 FG 420 (421)
T ss_dssp C-
T ss_pred Hh
Confidence 75
No 62
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=6.7e-40 Score=329.83 Aligned_cols=335 Identities=16% Similarity=0.150 Sum_probs=249.5
Q ss_pred CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc----CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ 156 (467)
Q Consensus 81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~ 156 (467)
.++++|+|+.|.+ ..+. ++.+.+++.+.+.. .....|.+..|.+++|+++++++. .|. +++++|++
T Consensus 31 ~~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~-- 100 (400)
T 3asa_A 31 PQHTVINLSIGDT----TQPL-NASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFI-- 100 (400)
T ss_dssp TTSCCEECSSCCC----CCCC-CHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEE--
T ss_pred CCCceEeccCCCC----CCCC-CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEE--
Confidence 4568999999987 4443 77888888777642 123678888899999999999964 343 55889999
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC-eEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
|+|+++++.++ +..+.+||+|+++.|+|..+...++..|++ ++.+|++++.++..|++.+ ++++++++
T Consensus 101 ~~G~~~al~~~---~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--------~~~~~v~l 169 (400)
T 3asa_A 101 SDGAKVDLFRL---LSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED--------THIDILCL 169 (400)
T ss_dssp ESCHHHHHHHH---HHHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT--------CCCSEEEE
T ss_pred ccChHHHHHHH---HHHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc--------cCccEEEE
Confidence 99999999986 345679999999999999999999999999 9999985433344444321 34567777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA 315 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 315 (467)
++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ....+..+....++++++.||||.+|++|+|+||
T Consensus 170 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~ 247 (400)
T 3asa_A 170 CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS--LPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGW 247 (400)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEE
T ss_pred eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC--CCCchhhCCCCCCceEEEecchhhcCCcchheeE
Confidence 89999999999999999999999999999999999998876531 1111111111134689999999999999999999
Q ss_pred EEEecCCHHH-------HhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238 316 MNVVCSSSDL-------AARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 388 (467)
Q Consensus 316 ~~~v~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r 388 (467)
++ .++++ ++. +.. ......+.+++.+.|.++..+|++. ++++.++++++++
T Consensus 248 ~~---~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~a~~~~l~~~--------~~~~~~~~~~~~~ 305 (400)
T 3asa_A 248 TV---IPQELTYADGHFVIQ--------DWE---RFLSTTFNGASIPAQEAGVAGLSIL--------PQLEAIHYYRENS 305 (400)
T ss_dssp EE---CCTTCBCTTSCBHHH--------HHH---HHHHHHCCCCCHHHHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred Ee---eChhhccchhhhHHH--------HHH---HHhccCccCCChHHHHHHHHHhCcH--------HHHHHHHHHHHHH
Confidence 96 56665 444 211 1111123457788888887777542 2557788899999
Q ss_pred HHHHHHhhhccCCCCCcccccCCcceEEecC-CC-----HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhH
Q 012238 389 QKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-LN-----KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKC 452 (467)
Q Consensus 389 ~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~-l~-----~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i 452 (467)
+++.+.|+ ++| +++..+.+|+|+|+. +. .++++++++++||.+.+| + ||++.. +++++
T Consensus 306 ~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~i 379 (400)
T 3asa_A 306 DLLRKALL-ATG----FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLG-KREDI 379 (400)
T ss_dssp HHHHHHHH-HTT----CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCS-CHHHH
T ss_pred HHHHHHHH-HCC----CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeC-CHHHH
Confidence 99999999 776 567777778888876 42 256777887779999876 2 999655 88999
Q ss_pred HHHHHHHHHHHHhc
Q 012238 453 EYLADAIIDSYHNV 466 (467)
Q Consensus 453 ~~~~~~l~~~l~~~ 466 (467)
++++++|++++++.
T Consensus 380 ~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 380 LAACERLQMAPALQ 393 (400)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 63
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=1.1e-39 Score=329.80 Aligned_cols=359 Identities=16% Similarity=0.104 Sum_probs=257.2
Q ss_pred CCcccchHHHhh-cCCCCCcEEecCcccCCCCCC-CCchHHHHHHHHHHHhcCC----CCcCCCCcchHHHHHHHHHHHh
Q 012238 67 PDPILGVSEAFK-ADTDEKKLNLGVGAYRTEELQ-PYVLDVVKKAENLMLERGE----NKEYLPIEGLAAFNKVTAELLF 140 (467)
Q Consensus 67 ~~~i~~~~~~~~-~~~~~~~i~l~~G~~~d~~~~-p~~~~~v~~a~~~~~~~~~----~~~Y~~~~G~~~lr~aia~~l~ 140 (467)
+..+.....++. ...++++|||+.|.| .. |.+.+.+.+++.+.+.... ...|.+..|.++||+++|+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~ 89 (417)
T 3g7q_A 14 HSGITRLMEDLNDGLRTPGAIMLGGGNP----AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLR 89 (417)
T ss_dssp --CHHHHHHHHHC-----CCEECSCCCC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhhccCCCceEecCcCC----CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHH
Confidence 444555555443 334578999999988 32 3234678888877764321 1479999999999999999997
Q ss_pred CCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC-----EEEEc-CCCCcchHHHHhhC----CCCeEEeeeecC-
Q 012238 141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA-----KVLIS-SPTWGNHKNIFNDA----RVPWSEYRYYDP- 209 (467)
Q Consensus 141 ~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd-----~Vlv~-~P~y~~~~~~~~~~----G~~~~~v~~~~~- 209 (467)
..+|..+++++|++ |+|++++++++ +...+.+|| +|+++ +|+|..|...+... +..+...++..+
T Consensus 90 ~~~g~~~~~~~i~~--t~G~t~al~~~--~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (417)
T 3g7q_A 90 ETLGWDIEPQNIAL--TNGSQSAFFYL--FNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ 165 (417)
T ss_dssp HHHCCCCCGGGEEE--ESCHHHHHHHH--HHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE
T ss_pred HHhCCCCCcccEEE--eCCcHHHHHHH--HHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc
Confidence 76677778999999 99999999998 344466887 89997 99999988765322 223333333211
Q ss_pred CCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238 210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (467)
Q Consensus 210 ~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 289 (467)
.++.+|++.++ +. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+..+....+..
T Consensus 166 ~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~----- 235 (417)
T 3g7q_A 166 FKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR----- 235 (417)
T ss_dssp EEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC-----
T ss_pred cccccCHHHhc--cc---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc-----
Confidence 24568999987 43 678899999999999999999999999999999999999999998643221000000
Q ss_pred HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL 369 (467)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 369 (467)
....++++++.|||| ++++|+|+||++ .++++++. +.........+++.+.|.++..++++..+
T Consensus 236 ~~~~~~~i~~~s~sK-~~~~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 299 (417)
T 3g7q_A 236 PLWNPNIILCMSLSK-LGLPGSRCGIII---ANDKTITA------------IANMNGIISLAPGGMGPAMMCEMIKRNDL 299 (417)
T ss_dssp CCCCTTEEEEEESGG-GTCTTSCCEEEE---CCHHHHHH------------HHHHHHHHCCCCCSHHHHHHHHHHHTTCH
T ss_pred cCCCCCEEEEEechh-ccCCCcceEEEE---eCHHHHHH------------HHHhhcceeeCCCcHHHHHHHHHHcCcch
Confidence 022467999999999 688999999995 78888887 55554444556778888898888887654
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhc-cCCCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC---
Q 012238 370 FDEWKAEMEM-MAGRIKNVRQKLFDSLSAK-DKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD--- 439 (467)
Q Consensus 370 ~~~~~~~l~~-~~~~~~~~r~~l~~~l~~~-~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g--- 439 (467)
.+++.+ ++++++++++.+.+.|+ + ++- ..+.+..+++|+|+|+.+ +.+.+.+.+.++||.+.+|
T Consensus 300 ----~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f 373 (417)
T 3g7q_A 300 ----LRLSETVIKPFYYQRVQQTIAIIR-RYLSE-ERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYF 373 (417)
T ss_dssp ----HHHHHHTHHHHHHHHHHHHHHHHH-HHCCT-TTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGG
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-CCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhh
Confidence 333444 77888888888888887 5 321 025677788999999743 4444444445679999874
Q ss_pred ------------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 440 ------------G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 ------------g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ |||++. +++++++++++|.++++++
T Consensus 374 ~~~~~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 374 FPGLDKPWPHTHQCMRMNYVP-EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp CTTBSSCCGGGGGEEEEESCS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 2 999998 9999999999999998764
No 64
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=5.4e-39 Score=321.93 Aligned_cols=341 Identities=15% Similarity=0.077 Sum_probs=262.7
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHH-HHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAA-FNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~-lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+++|||+.|.+ ..+ +++.+.+++.+.+... ...|.+. .++ +|+++++++...+|..+++++|++ |+|++
T Consensus 28 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~~ 97 (390)
T 1d2f_A 28 ADLLPFTISDM----DFA-TAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVI 97 (390)
T ss_dssp --CEECCSSSC----SSC-CCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHH
T ss_pred CCeeEeeecCC----CCC-CCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCHH
Confidence 47899999987 444 3788999999887543 3678654 778 999999998766666667889999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N 240 (467)
+++.++ +...+.+||+|+++.|+|..+...++..|++++.+|++++. ++.+|++.+++.+++ .+++++++++|||
T Consensus 98 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~n 173 (390)
T 1d2f_A 98 YMVSEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQN 173 (390)
T ss_dssp HHHHHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCT
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCC
Confidence 999997 33345689999999999999999999999999999986432 456999999999973 3678888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (467)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ ......+ +.|+||.+|++|+|+||++ +
T Consensus 174 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~d~-~~s~sK~~~~~G~r~G~~~--~ 247 (390)
T 1d2f_A 174 PTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNV-ARGDWAL-LTSGSKSFNIPALTGAYGI--I 247 (390)
T ss_dssp TTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGT-CCSSEEE-EECSHHHHTCGGGCCEEEE--E
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHc-chhhHhh-ccCccHhhcccChhheEEE--E
Confidence 999999999999999999999999999999999887531 11111111 1111123 9999999999999999996 4
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhcc--CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLAR--PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK 398 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~ 398 (467)
.++++++. +..... ..+.+++.+.+.++..+|.+. .+.+++.+++++++++.+.+.|+ +
T Consensus 248 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~-~ 308 (390)
T 1d2f_A 248 ENSSSRDA------------YLSALKGRDGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMN-A 308 (390)
T ss_dssp CSHHHHHH------------HHHHHHTTSCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CCHHHHHH------------HHHHHhhhcccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 56777776 444333 223367777777777666531 23367888999999999999998 6
Q ss_pred -cCCCCCcccccCCcceEEecCC-----CHH-HHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHH
Q 012238 399 -DKSGKDWSFILRQIGMFSFTGL-----NKA-QSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIID 461 (467)
Q Consensus 399 -~g~~~~~~~~~~~~g~f~~~~l-----~~~-~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~ 461 (467)
++ + +.+..+.+++++|+.+ +.+ +.+.+++++||.+.+| + ||+++. +++++++++++|.+
T Consensus 309 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (390)
T 1d2f_A 309 AFP--E-LNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLIN 384 (390)
T ss_dssp HCS--S-CCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHH
T ss_pred hCC--C-CEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 42 1 5677888898888643 443 4566665679999875 2 999998 78999999999999
Q ss_pred HHHhc
Q 012238 462 SYHNV 466 (467)
Q Consensus 462 ~l~~~ 466 (467)
+++++
T Consensus 385 ~l~~~ 389 (390)
T 1d2f_A 385 AIRAV 389 (390)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98865
No 65
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=1.8e-38 Score=314.87 Aligned_cols=321 Identities=14% Similarity=0.111 Sum_probs=254.4
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
.+++|||+.|++ ..++ ++.+.+++.+.+.. ...| |..+..++|+++++++.. ++++|++ |+|++
T Consensus 31 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~------~~~~v~~--~~g~t 94 (363)
T 3ffh_A 31 LTKITKLSSNEN----PLGT-SKKVAAIQANSSVE--TEIY-PDGWASSLRKEVADFYQL------EEEELIF--TAGVD 94 (363)
T ss_dssp CSCCEECSSCSC----TTCC-CHHHHHHHHTCBSC--CCBC-----CHHHHHHHHHHHTC------CGGGEEE--ESSHH
T ss_pred CCceEEccCCCC----CCCC-CHHHHHHHHHHHHH--hhcC-CCcchHHHHHHHHHHhCC------ChhhEEE--eCCHH
Confidence 358999999977 4554 78899998886543 3556 667899999999999753 3789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++++++ +...+.+||+|+++.|+|..+...++..|++++.++.+ .++.+|++.+++.++ ++++++++++||||
T Consensus 95 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~p~np 167 (363)
T 3ffh_A 95 ELIELL--TRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAID---EKTTIVWICNPNNP 167 (363)
T ss_dssp HHHHHH--HHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred HHHHHH--HHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhcc---cCCCEEEEeCCCCC
Confidence 999998 34446799999999999999999999999999999984 367899999999987 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (467)
||.+++.+++.+|++.|++ |+++|+||+|.++.++.. . +........++++++.||||.+|++|+|+||++ .
T Consensus 168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~~~~-~---~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~---~ 239 (363)
T 3ffh_A 168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVTPQP-E---KHEKLVRTYKNLIITRTFSKIYGLASARVGYGI---A 239 (363)
T ss_dssp TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCSSCC-C---CCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEE---E
T ss_pred cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcCccc-c---CHHHHhhcCCCEEEEeechhhhcCchhceeeee---c
Confidence 9999999999999888887 999999999998876211 1 111223446789999999999999999999996 5
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cC
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK-DK 400 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~-~g 400 (467)
++++++. +..... ..+++.+.+.++..+|++. +.+++.+++++++++.+.+.|+ + .|
T Consensus 240 ~~~~~~~------------l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~g 297 (363)
T 3ffh_A 240 DKEIIRQ------------LNIVRP--PFNTTSIGQKLAIEAIKDQ-------AFIGECRTSNANGIKQYEAFAK-RFEK 297 (363)
T ss_dssp CHHHHHH------------HHHTCC--SCCCBHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHH-HCTT
T ss_pred CHHHHHH------------HHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHh-hCCC
Confidence 7888777 665544 3467888888888888754 3367888999999999999998 7 55
Q ss_pred CCCCcccccCCcceEEecCC--CHHH-HHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHH
Q 012238 401 SGKDWSFILRQIGMFSFTGL--NKAQ-SDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSY 463 (467)
Q Consensus 401 ~~~~~~~~~~~~g~f~~~~l--~~~~-~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l 463 (467)
+.+.++. |.|+|+.+ +.+. .+.+. ++||.+.+|. ||+++ +++++++++++|++++
T Consensus 298 ----~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 298 ----VKLYPAN-GNFVLIDLGIEAGTIFSYLE-KNGYITRSGAALGFPTAVRITIG--KEEDNSAVIALLEKLL 363 (363)
T ss_dssp ----CEECCCC-SSEEEEECSSCHHHHHHHHH-HTTEECEETTTTTCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred ----ceECCCC-CeEEEEECCCCHHHHHHHHH-HCCeEEEeCccCCCCCeEEEECC--CHHHHHHHHHHHHHhC
Confidence 5665555 45778765 3444 55555 5699999862 99987 6799999999998763
No 66
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=1.5e-38 Score=316.06 Aligned_cols=324 Identities=18% Similarity=0.162 Sum_probs=259.7
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
.+++|||+.|.+ ..++ ++.+.+++.+.+.......|.+ .+..++|+++++++... ++++|++ |+|++
T Consensus 29 ~~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~~-----~~~~i~~--~~g~t 95 (367)
T 3euc_A 29 SHGLVKLDAMEN----PYRL-PPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQVP-----AGMEVLL--GNGSD 95 (367)
T ss_dssp CTTCEECCSSCC----CCCC-CHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTCC-----TTCEEEE--EEHHH
T ss_pred CCCeeEccCCCC----CCCC-CHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCCC-----CcceEEE--cCCHH
Confidence 357899999986 5554 7889999988775322367844 68999999999997431 3679999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++++++ +...+.+||+|+++.|+|..+...++..|++++.++++ .++.+|++.+++.+++ .+++++++++||||
T Consensus 96 ~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 169 (367)
T 3euc_A 96 EIISML--ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFTLDRGAMLAAMAE--HQPAIVYLAYPNNP 169 (367)
T ss_dssp HHHHHH--HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECC--TTSCCCHHHHHHHHHH--HCCSEEEEESSCTT
T ss_pred HHHHHH--HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHHHhhc--cCCCEEEEcCCCCC
Confidence 999998 34446799999999999999999999999999999984 3678999999999984 25678888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238 242 TGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
||.+++.+++++|+++|++| |+++|+||+|.++.... ... .....++++++.||||. +++|+|+||++
T Consensus 170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~---~~~----~~~~~~~~i~~~s~sK~-~~~G~r~G~~~-- 239 (367)
T 3euc_A 170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES---WMS----RLTDFGNLLVMRTVSKL-GLAGIRLGYVA-- 239 (367)
T ss_dssp TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC---SGG----GGGTCTTEEEEEECCCT-TSCSCCEEEEE--
T ss_pred CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc---hHH----HHhhCCCEEEEecchhh-cccccCceeee--
Confidence 99999999999999999999 99999999999887432 111 22445688999999999 89999999996
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
.++++++. +...... .+++.+.+.++..+|++. +.+++.+++++++++.+.+.|+ ++
T Consensus 240 -~~~~~~~~------------~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~ 296 (367)
T 3euc_A 240 -GDPQWLEQ------------LDKVRPP--YNVNVLTEATALFALEHV-------AVLDEQAAQLRAERSRVAEGMA-AH 296 (367)
T ss_dssp -ECHHHHHH------------HGGGCCS--SCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHHHH-TS
T ss_pred -eCHHHHHH------------HHHhCCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hC
Confidence 57777776 6655443 357788888888888762 2366788899999999999998 76
Q ss_pred -CCCCCcccccCCcceEEecCC-CHHHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHH
Q 012238 400 -KSGKDWSFILRQIGMFSFTGL-NKAQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYH 464 (467)
Q Consensus 400 -g~~~~~~~~~~~~g~f~~~~l-~~~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~ 464 (467)
| +.+. +.+|+|+|+.+ +.+.+.+.++++||.+.+|+ ||+++ +++++++++++|+++++
T Consensus 297 ~g----~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 297 GG----VTVF-PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp TT----CEEC-CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred CC----cEEC-CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHhc
Confidence 4 5644 45567888766 45444444566799998862 99987 67999999999999875
No 67
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=3.6e-40 Score=343.26 Aligned_cols=350 Identities=13% Similarity=0.079 Sum_probs=260.9
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC-CCcchHHHHHHHHHHHhCC-CC-cccc-cCceeeeecCC
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGA-DN-SVLK-EQRVATVQGLS 159 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~-~~-~~~~-~~~i~~~~t~g 159 (467)
++|+|++|.| +.+ ++.+.+++.+.+.. ..|. |..|.+++|+++++++... ++ ..+. +++|++ |+|
T Consensus 104 ~~i~l~~g~~----~~~--~~~~v~a~~~~~~~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~G 172 (533)
T 3f6t_A 104 DAVNYCHTEL----GLN--RDKVVAEWVNGAVA---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TEG 172 (533)
T ss_dssp HHHHHHHHTT----CCC--HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EEH
T ss_pred hheeccCCCC----CcC--CcHHHHHHHHHHHh---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--ECC
Confidence 4799999988 444 34444444444433 3454 7889999999999998544 23 3343 468999 999
Q ss_pred chhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeec--CCCCCCChhhHHHHHHcCCCCcEEEE
Q 012238 160 GTGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD--PKTVGLDFEGMIADIKAAPGGSFILL 234 (467)
Q Consensus 160 gt~al~l~~~~l~---~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~~~i~ 234 (467)
+++++.++...+. .+.+||+|+++.|+|..|...++..|++++.++++. +.++++|++.+++.++ +++++++
T Consensus 173 ~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~ 249 (533)
T 3f6t_A 173 GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALI 249 (533)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEE
T ss_pred HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEE
Confidence 9999999833211 356999999999999999999999999999998854 4578899999999886 5788888
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHH-hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc
Q 012238 235 HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI 313 (467)
Q Consensus 235 i~~p~NPTG~~~~~~~l~~l~~~~~-~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 313 (467)
+++||||||.+++.+++++|+++|+ +||++||+||+|.++.++.. ++.. ...+++++++||||.+|++|+|+
T Consensus 250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-----~~~~--~~~~~~i~~~S~SK~~g~~G~Ri 322 (533)
T 3f6t_A 250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-----SIYS--VVPYNTMLVYSYSKLFGCTGWRL 322 (533)
T ss_dssp EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-----CHHH--HSGGGEEEEEESHHHHTCGGGCE
T ss_pred EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-----CHhh--cCCCCEEEEecCcccCCCcccce
Confidence 8999999999999999999999999 68999999999999886521 1211 12368999999999999999999
Q ss_pred ceEEEecCCHHHHhhhhhhh------------------------HHHHHHHHHhhccCccCCCchHHHHH----HHHHhC
Q 012238 314 GAMNVVCSSSDLAARCCEVA------------------------VIQVKSQLKRLARPMYSNPPVHGARI----VANVVG 365 (467)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~L~ 365 (467)
||++ +.++++++.--+.. .-.+...+.........+++...|.+ +..+|.
T Consensus 323 G~l~--~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 323 GVIA--LNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp EEEE--EESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred EEEE--ECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 9996 34443333300000 00011112334444456777777776 334453
Q ss_pred C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC--------------------
Q 012238 366 N----PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN-------------------- 421 (467)
Q Consensus 366 ~----~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-------------------- 421 (467)
+ .. +.+++++++++++++++.+.+.|. ++ +.+..+++|+|+|+++.
T Consensus 401 ~~~g~~~----~~~~~~~~~~~~~~r~~~l~~~L~--~~----~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~ 470 (533)
T 3f6t_A 401 TSTNGGS----DDPYIDIARKLVSERYDQLHDAMQ--AP----KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFE 470 (533)
T ss_dssp TCBGGGT----BCHHHHHHHHHHHHHHHHHHHHHT--CC----CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCC
T ss_pred hhccccc----hHHHHHHHHHHHHHHHHHHHHhcC--CC----ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCC
Confidence 1 11 135578899999999999999885 34 56778899999997552
Q ss_pred -HHHHHHHHHcccEEEeCC-------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 422 -KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 422 -~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+++.++++++||++.|| | |||++.++++++++++++|.++++++
T Consensus 471 ~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 471 QVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 256778888889999997 2 99999779999999999999998764
No 68
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=1.1e-38 Score=317.97 Aligned_cols=303 Identities=17% Similarity=0.150 Sum_probs=249.6
Q ss_pred CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCC
Q 012238 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR 198 (467)
Q Consensus 119 ~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G 198 (467)
...|.+..|.++||+++++++.. +++++|++ |+||++++.++ +...+.+||+|+++.|+|..+...++..|
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~~-----~~~~~v~~--~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g 126 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYTG-----VKPEQILQ--TNGATGANLLV--LYSLIEPGDHVISLYPTYQQLYDIPKSLG 126 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSSS-----CCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESSCTHHHHHHHHTT
T ss_pred CcCCCCCCChHHHHHHHHHHhcc-----CChhhEEE--cCChHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcC
Confidence 37899999999999999999642 33789999 99999999998 44457799999999999999999999999
Q ss_pred CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238 199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS 278 (467)
Q Consensus 199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~ 278 (467)
++++.++++++.++.+|++.+++.++ ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.
T Consensus 127 ~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~ 203 (375)
T 3op7_A 127 AEVDLWQIEEENGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD 203 (375)
T ss_dssp CEEEEEEEEGGGTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSC
T ss_pred CEEEEEeccccCCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccC
Confidence 99999999755667789999999997 567788889999999999999999999999999999999999999988652
Q ss_pred CCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358 (467)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (467)
... +.+..++++++.||||.++++|+|+||++ .++++++. +.........+++.+.+.
T Consensus 204 ----~~~---~~~~~~~~i~~~s~sK~~~~~G~r~G~v~---~~~~l~~~------------~~~~~~~~~~~~~~~~~~ 261 (375)
T 3op7_A 204 ----VPS---IIEVYDKGIAVNSLSKTYSLPGIRIGWVA---ANHQVTDI------------LRDYRDYTMICAGVFDDL 261 (375)
T ss_dssp ----CCC---HHHHCTTEEEEEESSSSSSCGGGCCEEEE---CCHHHHHH------------HTTTGGGTTSCCCHHHHH
T ss_pred ----CCc---hhhhcCCEEEEeEChhhcCCcccceEEEE---eCHHHHHH------------HHHHHhhhccCCCcHHHH
Confidence 111 12335678999999999999999999996 68888887 666665555567778888
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----C-HHHHHHHHHccc
Q 012238 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWH 433 (467)
Q Consensus 359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~g 433 (467)
++..+|.+. ++.+++.+++++++++.+.+.|+ +.+ .+.+..+.+++++|+.+ + .++++++++++|
T Consensus 262 ~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 331 (375)
T 3op7_A 262 VAQLALAHY------QEILERNRHILEENLAILDQWIE-EEP---LVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHG 331 (375)
T ss_dssp HHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHH-HCT---TEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHC
T ss_pred HHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHh-hCC---CceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCC
Confidence 777776542 34577888889999999999998 653 15677788887776532 3 455777877789
Q ss_pred EEEeCCC--------eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 434 VYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 434 I~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
|.+.||. ||+++. +.+++++++++|.++++++
T Consensus 332 i~v~~g~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 332 VLLVPGNRFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp EECEEGGGGTCTTEEEECCCS-CHHHHHHHHHHHHHHHGGG
T ss_pred EEEeChhhhCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHH
Confidence 9999862 999987 6689999999999998865
No 69
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1e-38 Score=325.55 Aligned_cols=365 Identities=14% Similarity=0.090 Sum_probs=266.6
Q ss_pred CCCcccchHHHhhc-CCCCCcE-EecCcccCCCCCC-CCchHHHHHHHHHHHhc-------C----CCCcCCCCcchHHH
Q 012238 66 PPDPILGVSEAFKA-DTDEKKL-NLGVGAYRTEELQ-PYVLDVVKKAENLMLER-------G----ENKEYLPIEGLAAF 131 (467)
Q Consensus 66 ~~~~i~~~~~~~~~-~~~~~~i-~l~~G~~~d~~~~-p~~~~~v~~a~~~~~~~-------~----~~~~Y~~~~G~~~l 131 (467)
+++++......+.+ ...+++| +|+.|.| .. |.+.+.+.+++.+.+.. . ....|.+..|.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~l 88 (444)
T 3if2_A 13 QPTGISQLMDDLGDALKSDQPVNMLGGGNP----AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAF 88 (444)
T ss_dssp SCCHHHHHHHHHHHHHHSSSCCEECSCCCC----CCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHH
T ss_pred CchhHHHHHHHHHhhhcCchhhhccCCCCC----CcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHH
Confidence 34455555444321 1336899 9999988 22 22336677777776543 2 12569889999999
Q ss_pred HHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC--------------EEEEc-CCCCcchHH----
Q 012238 132 NKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--------------KVLIS-SPTWGNHKN---- 192 (467)
Q Consensus 132 r~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd--------------~Vlv~-~P~y~~~~~---- 192 (467)
|+++|+++...+|..+++++|++ |+|++++++++ +...+.+|| +|+++ .|+|..|..
T Consensus 89 r~~ia~~l~~~~g~~~~~~~i~~--t~G~t~al~~~--~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~ 164 (444)
T 3if2_A 89 IDALVGFFNRHYDWNLTSENIAL--TNGSQNAFFYL--FNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVE 164 (444)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHH--HHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSS
T ss_pred HHHHHHHHHhhcCCCCCHHHEEE--ecCcHHHHHHH--HHHHhCCCccccccccccccccceEEEeCCCCccchhhcccc
Confidence 99999999777777778999999 99999999998 333456887 78876 899999876
Q ss_pred --HHhhCCCCeEEeeeecCC---CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012238 193 --IFNDARVPWSEYRYYDPK---TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF 267 (467)
Q Consensus 193 --~~~~~G~~~~~v~~~~~~---~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~ 267 (467)
.+...|..++.++.++++ ++++|++.++++++...++++++++++||||||.+++.+++++|+++|++||++||+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 244 (444)
T 3if2_A 165 GQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLII 244 (444)
T ss_dssp SCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred cchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 345677788888774211 357999999988432126788999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC
Q 012238 268 DVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP 347 (467)
Q Consensus 268 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (467)
||+|..+..+....+.. ....++++++.||||. +++|+|+||++ .++++++. +......
T Consensus 245 De~~~~~~~~~~~~~~~-----~~~~~~~i~~~S~sK~-~~~G~r~G~~~---~~~~l~~~------------~~~~~~~ 303 (444)
T 3if2_A 245 DNAYGMPFPNIIYSDAH-----LNWDNNTILCFSLSKI-GLPGMRTGIIV---ADAKVIEA------------VSAMNAV 303 (444)
T ss_dssp ECTTCTTTTCCBCSCCC-----CCCCTTEEEEEESTTT-TCGGGCCEEEE---CCHHHHHH------------HHHHHHH
T ss_pred ECCCCCccccccccccc-----ccCCCCEEEEechhhc-cCCCCceEEEE---ECHHHHHH------------HHHHHHh
Confidence 99997543211000000 0224679999999997 78999999995 78888877 5444444
Q ss_pred ccCCCchHHHHHHHHHhCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhc-cCCCCCcccccCCcceEEecC-----C
Q 012238 348 MYSNPPVHGARIVANVVGNPALFDEWKAEMEM-MAGRIKNVRQKLFDSLSAK-DKSGKDWSFILRQIGMFSFTG-----L 420 (467)
Q Consensus 348 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~-~~~~~~~~r~~l~~~l~~~-~g~~~~~~~~~~~~g~f~~~~-----l 420 (467)
...+++.+.|.++..++.+..+ .+++.+ +++.++++++.+.+.|+ + ++- ..+.+..+.+|+|+|+. .
T Consensus 304 ~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~-~~~~~~~~~~g~~~~~~~~~~~~ 377 (444)
T 3if2_A 304 VNLAPTRFGAAIATPLVANDRI----KQLSDNEIKPFYQKQATLAVKLLK-QALGD-YPLMIHKPEGAIFLWLWFKDLPI 377 (444)
T ss_dssp HHSSCCCHHHHHHHHHHHTSHH----HHHHHHTHHHHHHHHHHHHHHHHH-HHSSS-SSEEEECCCBSSEEEEEETTCSS
T ss_pred ccCCCChHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHHH-Hhccc-CCceEecCCccEEEEEEcCCCCC
Confidence 4456677888888888877654 333443 67788888888888877 4 321 02566778899999873 3
Q ss_pred CHHHHHHHHHcccEEEeCC----------------C--eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 421 NKAQSDNMTNKWHVYMTKD----------------G--RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 421 ~~~~~~~ll~~~gI~v~~g----------------g--Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+.+.+...++++||.+.+| + |||++. +++++++++++|.++++++
T Consensus 378 ~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 378 STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHH
Confidence 4544444445679999864 2 999998 9999999999999998764
No 70
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=3.6e-38 Score=312.31 Aligned_cols=313 Identities=16% Similarity=0.188 Sum_probs=242.8
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (467)
++|||+.|++ .+++ ++.+ .+ . ....|++ .+.+++|+++|+++.. ++++|++ |+|++++
T Consensus 30 ~~i~l~~~~~----~~~~-~~~v------a~-~-~~~~Y~~-~~~~~lr~~la~~~~~------~~~~v~~--~~G~~~a 87 (356)
T 1fg7_A 30 GDVWLNANEY----PTAV-EFQL------TQ-Q-TLNRYPE-CQPKAVIENYAQYAGV------KPEQVLV--SRGADEG 87 (356)
T ss_dssp CSEECSSCCC----SSCC-CCCC------CC-C-CTTSCCC-SSCHHHHHHHHHHHTS------CGGGEEE--ESHHHHH
T ss_pred ceEEeeCCCC----CCCC-CHhH------hh-h-hhccCCC-ccHHHHHHHHHHHhCC------ChHHEEE--cCCHHHH
Confidence 6899999987 3333 3333 12 2 2367855 4689999999999732 2789999 9999999
Q ss_pred HHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238 164 LRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (467)
Q Consensus 164 l~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 242 (467)
++++ +...+.+| |+|+++.|+|..|...++..|++++.+|.+ +++++|++.+++.++ +++++++++|||||
T Consensus 88 i~~~--~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~----~~~~v~l~~p~npt 159 (356)
T 1fg7_A 88 IELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD----GVKVVYVCSPNNPT 159 (356)
T ss_dssp HHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT----TEEEEEEESSCTTT
T ss_pred HHHH--HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc----CCCEEEEeCCCCCC
Confidence 9997 34446799 999999999999999999999999999884 457899999988774 56788889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS 322 (467)
Q Consensus 243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~ 322 (467)
|.+++.+++++|+++|+ +|+++|+||+|.++..+ .... .+.+..+++++++||||.||++|+|+||++ .+
T Consensus 160 G~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~---~~ 229 (356)
T 1fg7_A 160 GQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---ASLA---GWLAEYPHLAILRTLSKAFALAGLRCGFTL---AN 229 (356)
T ss_dssp CCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---GCSG---GGTTTCTTEEEEEESSSTTCCGGGCCEEEE---EC
T ss_pred CCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---CcHH---HHHhhCCCEEEEecchHhhcCchhhhEEEE---eC
Confidence 99999999999999999 99999999999987621 1111 222344679999999999999999999996 57
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238 323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG 402 (467)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~ 402 (467)
+++++. +......+ +++.++|.++..+|.+..+ +++++.+++++++|+++.+.|+ +++.
T Consensus 230 ~~~~~~------------l~~~~~~~--~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~L~-~~~~- 288 (356)
T 1fg7_A 230 EEVINL------------LMKVIAPY--PLSTPVADIAAQALSPQGI-----VAMRERVAQIIAEREYLIAALK-EIPC- 288 (356)
T ss_dssp HHHHHH------------HHHHSCSS--CSCHHHHHHHHHHTSHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HSTT-
T ss_pred HHHHHH------------HHHhcCCC--CCCHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHHHHHHH-hCCC-
Confidence 888777 65554432 6778888888888875432 1367888999999999999999 7651
Q ss_pred CCcccccCCcceEEecCC-CHH-HHHHHHHcccEEEeC-C------C--eEEeccCChhhHHHHHHHHHHH
Q 012238 403 KDWSFILRQIGMFSFTGL-NKA-QSDNMTNKWHVYMTK-D------G--RISLAGLSLAKCEYLADAIIDS 462 (467)
Q Consensus 403 ~~~~~~~~~~g~f~~~~l-~~~-~~~~ll~~~gI~v~~-g------g--Ris~~~~~~~~i~~~~~~l~~~ 462 (467)
+....+.+|+|+|+.+ +.+ +.+++ .++||.+.+ | + ||+++ +++++++++++|+++
T Consensus 289 --~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~g~~~~~~~~iRis~~--~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 289 --VEQVFDSETNYILARFKASSAVFKSL-WDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRAE 354 (356)
T ss_dssp --EEEECCCSSSEEEEEETTHHHHHHHH-HHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHTC
T ss_pred --ceEECCCCCeEEEEECCCHHHHHHHH-HHCCEEEEECCCCCCCCCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 2233455677888865 344 45555 567999998 5 2 99998 478999999998764
No 71
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=5.5e-37 Score=300.86 Aligned_cols=312 Identities=16% Similarity=0.170 Sum_probs=244.8
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
.+.|+|+.+++ ..++ ++.+++++.+.... ...| |..|.+++|+++++++... +++|++ |+|+++
T Consensus 16 ~~~i~l~~n~~----~~~~-~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~~------~~~i~~--t~G~~~ 79 (337)
T 3p1t_A 16 AQAVCLAFNEN----PEAV-EPRVQAAIAAAAAR--INRY-PFDAEPRVMRKLAEHFSCP------EDNLML--VRGIDE 79 (337)
T ss_dssp CCCEECSSCCC----CSCC-CHHHHHHHHHHGGG--TTSC-CTTHHHHHHHHHHHHHTSC------GGGEEE--ESHHHH
T ss_pred CCceEeeCCCC----CCCC-CHHHHHHHHHhhhh--hccC-CCCchHHHHHHHHHHhCcC------HHHEEE--eCCHHH
Confidence 47899998865 4444 78899999888754 3678 6789999999999997432 779999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 242 (467)
++.++ +..+ +||+|+++.|+|..+...++..|++++.++++ +++++|++.+++. .+++++++++|||||
T Consensus 80 ~l~~~---~~~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-----~~~~~v~i~~p~npt 148 (337)
T 3p1t_A 80 CFDRI---SAEF-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLT--DDLLLDPNDLAQV-----SRDDCVVLANPSNPT 148 (337)
T ss_dssp HHHHH---HHHS-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBC--TTSSBCHHHHTTC-----CTTEEEEEESSCTTT
T ss_pred HHHHH---HHhc-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHhh-----cCCCEEEEeCCCCCC
Confidence 99997 3334 99999999999999999999999999999984 4578999988764 356799999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS 322 (467)
Q Consensus 243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~ 322 (467)
|.+++.+++.+| |+++++ +|+||+|.++..... .. ....+++++++||||.+|++|+|+||++ .+
T Consensus 149 G~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~--~~------~~~~~~~i~~~S~sK~~g~~G~r~G~~~---~~ 213 (337)
T 3p1t_A 149 GQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRA--RG------LAYGENELVFRSFSKSYGLAGLRLGALF---GP 213 (337)
T ss_dssp CCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSS--SC------CCCBTTEEEEEESSSTTCCTTTCCEEEE---CC
T ss_pred CCCCCHHHHHHH---HHhCCc-EEEECCChhhccccc--cc------cccCCCEEEEeeCchhccCcchheEEEE---eC
Confidence 999999977776 667776 566999998775421 10 1234578999999999999999999995 78
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238 323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG 402 (467)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~ 402 (467)
+++++. +..... ..+++.+.+.++..+|++... +.+..+++.++|+.+.+.|+ ++|
T Consensus 214 ~~~~~~------------l~~~~~--~~~~~~~~~~a~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~L~-~~g-- 269 (337)
T 3p1t_A 214 SELIAA------------MKRKQW--FCNVGTLDLHALEAALDNDRA-------REAHIAKTLAQRRRVADALR-GLG-- 269 (337)
T ss_dssp HHHHHH------------HHTTSC--TTCSCHHHHHHHHHHHTCHHH-------HHHHHHHHHHHHHHHHHHHH-HTT--
T ss_pred HHHHHH------------HHhhcC--CCCCCHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHHHHHH-HCc--
Confidence 888777 655433 346677788888888876422 33455666777899999999 776
Q ss_pred CCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHHH
Q 012238 403 KDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYH 464 (467)
Q Consensus 403 ~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~ 464 (467)
+.+.++++++++|...+.+.+.++++++||.+.+|. |||++ +++++++++++|+++++
T Consensus 270 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 270 --YRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp --CCBCCCSSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred --CEECCCCCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 567777777666555455555666667899999872 99988 57899999999998764
No 72
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=4.9e-39 Score=334.94 Aligned_cols=338 Identities=12% Similarity=0.047 Sum_probs=249.4
Q ss_pred cEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCC-CCc---ccccCceeeeecCCc
Q 012238 85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA-DNS---VLKEQRVATVQGLSG 160 (467)
Q Consensus 85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~-~~~---~~~~~~i~~~~t~gg 160 (467)
+|+|++|.+ +++ ++.+.+++.+.+.. ..|++..|.+++|+++++++... ++. ..++++|++ |+|+
T Consensus 106 ~i~l~~g~~----~~~--~~~~~~al~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G~ 174 (546)
T 2zy4_A 106 SLSYVRDQL----GLD--PAAFLHEMVDGILG---CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEGG 174 (546)
T ss_dssp HHHHHHHTS----CCC--HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEHH
T ss_pred hhecccCCC----CCC--ChHHHHHHHHhhhc---CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECCH
Confidence 799999987 554 45566666665532 57988889999999988766422 222 125689999 9999
Q ss_pred hhHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHHhh--CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 161 TGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFND--ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 161 t~al~l~~~~l~---~~~~gd~Vlv~~P~y~~~~~~~~~--~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
++++.++...+. .+.|||+|++++|+|+.|...+.. .|++++.++++++.++.+|++.+++.+. .+++++++
T Consensus 175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l 251 (546)
T 2zy4_A 175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFC 251 (546)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEE
Confidence 999999743321 256999999999999999987554 4688889988666668899999988764 57788888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH--HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVI--QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI 313 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~--~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 313 (467)
++||||||.+++.+++++|+++| +++|++||+||+|.++.++. .++... ..+++++++||||.+|++|+|+
T Consensus 252 ~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~-----~s~~~~--~~~~~i~~~S~SK~~g~~GlRi 324 (546)
T 2zy4_A 252 VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF-----QSLFAI--CPENTLLVYSFSKYFGATGWRL 324 (546)
T ss_dssp ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC-----CCHHHH--CGGGEEEEEESTTTTTCGGGCE
T ss_pred ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC-----cCHHHh--CCCCEEEEEeCccccCCCCcce
Confidence 99999999999999999999999 78999999999999987531 122122 1257999999999999999999
Q ss_pred ceEEEecCCHHHHhhhhhhhHHHHHH--------HHH-h-----------------------hccCccCCCchHHHHHH-
Q 012238 314 GAMNVVCSSSDLAARCCEVAVIQVKS--------QLK-R-----------------------LARPMYSNPPVHGARIV- 360 (467)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~--------~l~-~-----------------------~~~~~~~~~~~~~~~~~- 360 (467)
||++ +.++++++. +.. ++. . .......+++.+.|.++
T Consensus 325 G~~~--~~~~~l~~~--------l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a 394 (546)
T 2zy4_A 325 GVVA--AHQQNVFDL--------ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMA 394 (546)
T ss_dssp EEEE--EESSCHHHH--------HHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHH
T ss_pred EEEE--ECCHHHHHH--------HHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHH
Confidence 9996 343336655 211 000 0 01122335667777653
Q ss_pred ----HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC---------------
Q 012238 361 ----ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN--------------- 421 (467)
Q Consensus 361 ----~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~--------------- 421 (467)
..++.+. ..+++++++.|+++++.+.+.|. . + +...++++|||+|+++.
T Consensus 395 ~~a~~all~~~------~~~~~~~r~~~~~r~~~l~~~L~-~-~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl 462 (546)
T 2zy4_A 395 LFSLFALMDEA------DEYKHTLKQLIRRRETTLYRELG-M-P----PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWA 462 (546)
T ss_dssp HHHHHHHHCTT------CHHHHHHHHHHHHHHHHHHGGGT-S-S----CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcC-C-C----cccCCCCeeEEEEEEHHHhhcccccHHHHHHh
Confidence 2345442 23366788889999998888775 2 2 34567889999987542
Q ss_pred ------HHHHHHHHHcccEEEeCC-------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 422 ------KAQSDNMTNKWHVYMTKD-------G--RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 422 ------~~~~~~ll~~~gI~v~~g-------g--Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
.+++.++++++||.+.|| + |||++..+++++++++++|++++++
T Consensus 463 ~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 463 VKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp HHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 244667777789999997 2 9999977889999999999998765
No 73
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=4.6e-37 Score=305.12 Aligned_cols=340 Identities=13% Similarity=0.104 Sum_probs=254.6
Q ss_pred CCCcccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCc
Q 012238 66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS 145 (467)
Q Consensus 66 ~~~~i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~ 145 (467)
++..+.++...+..+ +.++|||+.|.+ ..+ .++.+.+++.+.+.. ...|. ..|..++|+++++++..
T Consensus 8 ~g~~~~~~~~~~~~~-~~~~idl~~~~~----~~~-~~~~v~~a~~~~~~~--~~~y~-~~~~~~l~~~la~~~~~---- 74 (364)
T 1lc5_A 8 HGGNIREPATVLGIS-PDQLLDFSANIN----PLG-MPVSVKRALIDNLDC--IERYP-DADYFHLHQALARHHQV---- 74 (364)
T ss_dssp SSCCCHHHHHHHTSC-GGGSEECSSCCC----TTC-CCHHHHHHHHHTGGG--GGSCC-CTTCHHHHHHHHHHHTS----
T ss_pred CCccHHHHHHhcCCC-ccceEEeccccC----CCC-CCHHHHHHHHHHHHH--hhcCC-CCCHHHHHHHHHHHHCc----
Confidence 444455555555433 347899999986 333 378889998887754 36684 46899999999999742
Q ss_pred ccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc
Q 012238 146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA 225 (467)
Q Consensus 146 ~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~ 225 (467)
++++|++ |+|+++++.++. ..+ +||+|+++.|+|..+...++..|++++.+|.++++++.+ ++.+.+.+.
T Consensus 75 --~~~~v~~--~~g~~~al~~~~---~~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~- 144 (364)
T 1lc5_A 75 --PASWILA--GNGETESIFTVA---SGL-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALT- 144 (364)
T ss_dssp --CGGGEEE--ESSHHHHHHHHH---HHH-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCC-
T ss_pred --CHHHEEE--CCCHHHHHHHHH---HHc-CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhcc-
Confidence 2679999 999999999973 334 789999999999999999999999999999853223333 465555553
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN 305 (467)
Q Consensus 226 ~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 305 (467)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ... .+.+..++++++.|+||.
T Consensus 145 --~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~---~~~~~~~~~i~~~s~sK~ 217 (364)
T 1lc5_A 145 --PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFI---PALKDNPHIWVLRSLTKF 217 (364)
T ss_dssp --TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSG---GGCTTCTTEEEEEESTTT
T ss_pred --CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc--chh---hHhccCCCEEEEEECchh
Confidence 4567788899999999999999999999999999999999999998876421 111 112334678999999999
Q ss_pred cccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238 306 LGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 385 (467)
Q Consensus 306 ~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~ 385 (467)
++++|+|+||++ +.++++++. +..... ..+++.+++.++..+|++. +++++.+++++
T Consensus 218 ~~~~G~r~G~~~--~~~~~~~~~------------l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~ 274 (364)
T 1lc5_A 218 YAIPGLRLGYLV--NSDDAAMAR------------MRRQQM--PWSVNALAALAGEVALQDS-------AWQQATWHWLR 274 (364)
T ss_dssp TTCTTTCCEEEE--CCCHHHHHH------------HHHHSC--TTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHH
T ss_pred hcCCccceEEEE--ECCHHHHHH------------HHHhCC--CCCCCHHHHHHHHHHHhCc-------HHHHHHHHHHH
Confidence 999999999994 478888877 554443 3367788888888888763 23678888999
Q ss_pred HHHHHHHHHhhhccCCCCCcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC--------C--eEEeccCChhhH
Q 012238 386 NVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKC 452 (467)
Q Consensus 386 ~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i 452 (467)
++++.+.+.|+ +++ + +++.++. |.|+|+.+. .++.+.+++ +||.+.+| + ||+++. ++++
T Consensus 275 ~~~~~l~~~L~-~~~--~-~~~~~~~-g~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~~--~~~~ 346 (364)
T 1lc5_A 275 EEGARFYQALC-QLP--L-LTVYPGR-ANYLLLRCEREDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIRS--AAQN 346 (364)
T ss_dssp HHHHHHHHHHH-TST--T-EEECCCS-SSEEEEEESCTTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECCC--HHHH
T ss_pred HHHHHHHHHHh-cCC--C-CEECCCC-CeEEEEECCCcHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeCC--HHHH
Confidence 99999999998 762 1 5665554 556666442 245666665 59999875 2 999874 6889
Q ss_pred HHHHHHHHHHHHhc
Q 012238 453 EYLADAIIDSYHNV 466 (467)
Q Consensus 453 ~~~~~~l~~~l~~~ 466 (467)
++++++|+++++++
T Consensus 347 ~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 347 ERLLAALRNVLTGI 360 (364)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999887653
No 74
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=8.2e-37 Score=302.55 Aligned_cols=321 Identities=16% Similarity=0.171 Sum_probs=252.3
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
++++|||+.|.+ ..++ ++.+.+++.+.+.. ...| +..+..++|+++++++.. ++++|++ |+|++
T Consensus 25 ~~~~idl~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~~------~~~~i~~--~~g~t 88 (361)
T 3ftb_A 25 GRELLDYSSNIN----PLGI-PKSFLNNIDEGIKN--LGVY-PDVNYRRLNKSIENYLKL------KDIGIVL--GNGAS 88 (361)
T ss_dssp ---CEETTCCCC----TTCS-CHHHHTTHHHHHHG--GGSC-CCTTCHHHHHHHHHHHTC------CSCEEEE--ESSHH
T ss_pred CCCEEEecCCCC----CCCC-CHHHHHHHHHHHHH--hcCC-CCccHHHHHHHHHHHhCC------CcceEEE--cCCHH
Confidence 458999999976 4443 78899999888765 2567 667899999999999742 3789999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++++++ +..+ |+|+++.|+|..+...++..|++++.+++++ +.+++++.+++.++ + ++++++++||||
T Consensus 89 ~al~~~---~~~~---d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~l~---~-~~~v~i~~p~np 156 (361)
T 3ftb_A 89 EIIELS---ISLF---EKILIIVPSYAEYEINAKKHGVSVVFSYLDE--NMCIDYEDIISKID---D-VDSVIIGNPNNP 156 (361)
T ss_dssp HHHHHH---HTTC---SEEEEEESCCTHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHTT---T-CSEEEEETTBTT
T ss_pred HHHHHH---HHHc---CcEEEecCChHHHHHHHHHcCCeEEEeecCc--ccCCCHHHHHHhcc---C-CCEEEEeCCCCC
Confidence 999997 3333 9999999999999999999999999999853 34688899999887 3 678889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (467)
||.+++.+++++|+++|++||+++|+||+|.++.++ .... ........+++++++|+||.++++|+|+||++ ++
T Consensus 157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~---~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~--~~ 230 (361)
T 3ftb_A 157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSS---FVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGI--TN 230 (361)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSS---SGGGTTTCSSEEEEEESSSTTSCGGGCCEEEE--ES
T ss_pred CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccc---hhHhcccCCCEEEEeeChhhcCCCCcceeEEE--eC
Confidence 999999999999999999999999999999988875 1111 11223345688999999999999999999985 58
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 401 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~ 401 (467)
++++++. +...... .+++.+.+.++..+|++. +.+++.+++++++++.+.+.|+ +++.
T Consensus 231 ~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~-~~~~ 288 (361)
T 3ftb_A 231 NKEIAAK------------IKAKQNP--WNINCFAEMAAINCLKDT-------NYIEESLLWIKKERKRFIEELN-KIGF 288 (361)
T ss_dssp CHHHHHH------------HHTTSCT--TCSCHHHHHHHHHTSSCH-------HHHHHHHHHHHHHHHHHHHHHH-HSSS
T ss_pred CHHHHHH------------HHhhCCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 8888877 6655443 367788888888888753 3367888999999999999998 7631
Q ss_pred CCCcc-cccCCcceEEecCC---CHH-HHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 402 GKDWS-FILRQIGMFSFTGL---NKA-QSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 402 ~~~~~-~~~~~~g~f~~~~l---~~~-~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
+. +.++.++ |+|+.+ +.+ +.+.+++ +||.+.+| + ||+++ ++++++++.++|+++.+.
T Consensus 289 ---~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 289 ---IKRVFSPHAN-FVLCRLENISGEKLYDSLLK-EDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp ---EEEEECCSSS-EEEEEESSSCHHHHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred ---CceecCCCCe-EEEEEcCCCCHHHHHHHHHH-CCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence 56 5566655 556543 444 4556655 59999986 2 99987 567888999999888765
No 75
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=6.8e-41 Score=336.14 Aligned_cols=341 Identities=14% Similarity=0.074 Sum_probs=266.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
++.|||++|.+ .+++ ++.+.+++.+.+... ...|.+. ..++|+++++++...+|..+++++|++ |+|+++
T Consensus 31 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~~ 100 (392)
T 3b1d_A 31 PQLLPAWIADM----DFEV-MPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVVP 100 (392)
Confidence 37899999987 5554 778888888877543 3667554 889999999998877777677889999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++.++ +...+.+||+|+++.|+|..+...++..|++++.+++.+++ ++.+|++.+++.+++ .+++++++++||||
T Consensus 101 a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 176 (392)
T 3b1d_A 101 AISIA--IQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNP 176 (392)
Confidence 99997 33346689999999999999999999999999999884232 466899999998863 35667888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccceEEEec
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (467)
||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+... .++++++.||||.++++|+|+||++ +
T Consensus 177 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~ 252 (392)
T 3b1d_A 177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH--EHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAI--I 252 (392)
Confidence 99999999999999999999999999999999987531 11122222121 4688999999999999999999996 3
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK- 398 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~- 398 (467)
.++++++. +....... +.+++.++|.++..+|.+. .+++++.+++++++++.+.+.|+ +
T Consensus 253 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~-~~ 313 (392)
T 3b1d_A 253 ENPTLCAQ------------FKHQQLVNNHHEVSSLGYIATETAYRYG------KPWLVALKAVLEENIQFAVEYFA-QE 313 (392)
Confidence 44557776 55444443 2356777777777777642 23467888999999999999998 6
Q ss_pred cCCCCCcccccCCcceEEecCCC-----H-HHHHHHHHcccEEEeCC--------C--eEEeccCChhhHHHHHHHHHHH
Q 012238 399 DKSGKDWSFILRQIGMFSFTGLN-----K-AQSDNMTNKWHVYMTKD--------G--RISLAGLSLAKCEYLADAIIDS 462 (467)
Q Consensus 399 ~g~~~~~~~~~~~~g~f~~~~l~-----~-~~~~~ll~~~gI~v~~g--------g--Ris~~~~~~~~i~~~~~~l~~~ 462 (467)
++ + +.+..+.+++++|+.+. . ++.+++++++||.+.+| + ||+++. +++++++++++|+++
T Consensus 314 ~~--~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~ 389 (392)
T 3b1d_A 314 AP--R-LKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCC 389 (392)
Confidence 42 1 67788899999887552 2 34566665679999886 1 999988 789999999999988
Q ss_pred HH
Q 012238 463 YH 464 (467)
Q Consensus 463 l~ 464 (467)
++
T Consensus 390 l~ 391 (392)
T 3b1d_A 390 LP 391 (392)
Confidence 75
No 76
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=1.4e-36 Score=302.18 Aligned_cols=325 Identities=14% Similarity=0.164 Sum_probs=250.2
Q ss_pred cEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
.|||+.|.+ ..++ ++.+.+++.+.+... ....|.+..+ .++|+++++++...+|..+++++|++ |+|+++
T Consensus 32 ~idl~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~ 103 (369)
T 3cq5_A 32 DIRLNTNEN----PYPP-SEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNE 103 (369)
T ss_dssp SEECSSCCC----CSCC-CHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHH
T ss_pred ceeccCCCC----CCCC-CHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHH
Confidence 499999987 4443 788888888877431 1367866555 79999999998665555566889999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 242 (467)
+++++ +...+.+||+|+++.|+|..+...++..|++++.+|. ++++++|++.+++.+++ .+++++++++|||||
T Consensus 104 al~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~npt 177 (369)
T 3cq5_A 104 ILQQL--LQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRA--KQPDIVFVTTPNNPT 177 (369)
T ss_dssp HHHHH--HHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHH--HCCSEEEEESSCTTT
T ss_pred HHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCC
Confidence 99987 3444679999999999999999999999999999986 34578999999999974 145677789999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC-eEEEEecCccCcccCCCccceEEEecC
Q 012238 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIGAMNVVCS 321 (467)
Q Consensus 243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (467)
|.+++.+++.+|+ +.+++++|+||+|.++.++ .... .+.+..+ +++++.|+||.++++|+|+||++ .
T Consensus 178 G~~~~~~~l~~l~---~~~~~~li~De~~~~~~~~---~~~~---~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~---~ 245 (369)
T 3cq5_A 178 GDVTSLDDVERII---NVAPGIVIVDEAYAEFSPS---PSAT---TLLEKYPTKLVVSRTMSKAFDFAGGRLGYFV---A 245 (369)
T ss_dssp CCCCCHHHHHHHH---HHCSSEEEEECTTGGGCCS---CCGG---GGTTTCTTTEEEEEESSSTTSCGGGCCEEEE---E
T ss_pred CCCCCHHHHHHHH---HhCCCEEEEECCchhhcCC---cchH---HHHhhCCCCEEEEEechHhcCCcccceEEEE---e
Confidence 9999998777775 4556999999999988753 1111 1223334 78999999999999999999996 5
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 401 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~ 401 (467)
++++++. +...... .+++.+.+.++..+|++. +++++.+++++++++.+.+.|+ +.|
T Consensus 246 ~~~~~~~------------l~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g- 302 (369)
T 3cq5_A 246 NPAFIDA------------VMLVRLP--YHLSALSQAAAIVALRHS-------ADTLGTVEKLSVERVRVAARLE-ELG- 302 (369)
T ss_dssp CTHHHHH------------HHTTSCT--TCSCHHHHHHHHHHHHTH-------HHHHTHHHHHHHHHHHHHHHHH-HHT-
T ss_pred CHHHHHH------------HHHcCCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-hCC-
Confidence 6667776 6554443 357788888888887653 2366788899999999999998 766
Q ss_pred CCCcccccCCcceEEecCC--CHHH-HHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 402 GKDWSFILRQIGMFSFTGL--NKAQ-SDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 402 ~~~~~~~~~~~g~f~~~~l--~~~~-~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
+.+.++ .|.|+|+.+ +.+. .+.+ .++||.+.+|| ||+++ +++++++++++|+++++.
T Consensus 303 ---~~~~~~-~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~~iRis~~--~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 303 ---YAVVPS-ESNFVFFGDFSDQHAAWQAF-LDRGVLIRDVGIAGHLRTTIG--VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp ---CEEECC-SSSEEEEECCSSHHHHHHHH-HHTTEECBCCSCTTEEEEECC--CHHHHHHHHHHHHHHHTT
T ss_pred ---CEECCC-CCeEEEEECCCCHHHHHHHH-HHCCEEEEECCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 466544 455777654 4444 4555 56799999973 99998 578999999999998753
No 77
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=4.8e-36 Score=297.28 Aligned_cols=316 Identities=15% Similarity=0.140 Sum_probs=243.1
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
+++|+|+.|.+ .+++ ++.+.+++.+.+... ....| +..+..++|+++++++. +++++|++ |+|+
T Consensus 26 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~lr~~la~~~g------~~~~~i~~--t~g~ 91 (360)
T 3hdo_A 26 ASWIKLNTNEN----PYPP-SPEVVKAILEELGPDGAALRIY-PSASSQKLREVAGELYG------FDPSWIIM--ANGS 91 (360)
T ss_dssp TTSEECSSCCC----SSCC-CHHHHHHHHHHHTTTCGGGGSC-CCSSCHHHHHHHHHHHT------CCGGGEEE--ESSH
T ss_pred cceeeccCCCC----CCCC-CHHHHHHHHHHHhcccchhhcC-CCCchHHHHHHHHHHhC------cCcceEEE--cCCH
Confidence 47999999987 5554 789999999887653 12567 44577999999999974 33789999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (467)
Q Consensus 161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N 240 (467)
++++.++ +...+.+||+|+++.|+|..+...++..|++++.++.++ ++.+ +.+++.+ +++++++++|+|
T Consensus 92 ~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~~-----~~~~v~i~~p~n 160 (360)
T 3hdo_A 92 DEVLNNL--IRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPERY-----EGKVFFLTTPNA 160 (360)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSSB-----CSSEEEEESSCT
T ss_pred HHHHHHH--HHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhhc-----CCCEEEEeCCCC
Confidence 9999998 444567999999999999999999999999999999842 3333 4443322 234888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (467)
|||.+++.+++.+| |+++|+++|+||+|.++... ... .+.+..++++++.|+||.+|++|+|+||++
T Consensus 161 ptG~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~----~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~--- 227 (360)
T 3hdo_A 161 PLGPSFPLEYIDEL---ARRCAGMLVLDETYAEFAES----NAL---ELVRRHENVVVTRTLSKSYSLAGMRIGLAI--- 227 (360)
T ss_dssp TTCCCCCHHHHHHH---HHHBSSEEEEECTTGGGSSC----CCT---HHHHHCSSEEEEEESTTTTSCTTSCCEEEE---
T ss_pred CCCCCcCHHHHHHH---HHHCCCEEEEECChHhhCCc----chh---HHhccCCCEEEEecchHhhcCCccceeeEe---
Confidence 99999999876665 78899999999999987432 111 223445789999999999999999999996
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 400 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g 400 (467)
.++++++. +...... .+++.+.+.++..+|++. +.+++.+++++++++.+.+.|+ +++
T Consensus 228 ~~~~~~~~------------~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~~ 285 (360)
T 3hdo_A 228 ARPEVIAA------------LDKIRDH--YNLDRLAQAACVAALRDQ-------AYLSECCRRIRETREWFTTELR-SIG 285 (360)
T ss_dssp CCHHHHHH------------HHHHSCS--CCSCHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred eCHHHHHH------------HHHhCCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHH-HCC
Confidence 68888877 5555443 457788888888888753 2367888999999999999999 776
Q ss_pred CCCCcccccCCcceEEecC---CCHHHHHHHHHcccEEEeCCC--------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 401 SGKDWSFILRQIGMFSFTG---LNKAQSDNMTNKWHVYMTKDG--------RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 401 ~~~~~~~~~~~~g~f~~~~---l~~~~~~~ll~~~gI~v~~gg--------Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
+.+.++.+ .|+|+. .+.+.+.+.+.++||.+.+++ ||+++ +++++++++++|+++.+.
T Consensus 286 ----~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 286 ----YDVIPSQG-NYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp ----CEECCCSS-SEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHHHHHHHHHHHHHC-
T ss_pred ----CEEcCCCc-cEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhcc
Confidence 46655554 466653 345554444556799998862 99998 579999999999988653
No 78
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=2.9e-38 Score=316.96 Aligned_cols=324 Identities=14% Similarity=0.106 Sum_probs=240.3
Q ss_pred CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHH--hc-CCCCcCCCCcch-----HHHHHHHHHHHhCCCCccccc-Cc
Q 012238 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ER-GENKEYLPIEGL-----AAFNKVTAELLFGADNSVLKE-QR 151 (467)
Q Consensus 81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~--~~-~~~~~Y~~~~G~-----~~lr~aia~~l~~~~~~~~~~-~~ 151 (467)
.++++|||+.|.| .++. ++.+.+++.+.. .. .....|.+..|. ++||+++|+++. .+|..+++ ++
T Consensus 20 ~~~~~i~l~~g~p----~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~ 93 (391)
T 3bwn_A 20 MSDFVVNLDHGDP----TAYE-EYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRY 93 (391)
T ss_dssp TTTSCEECSSCCC----GGGH-HHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSE
T ss_pred CCCCeeEcCCCCC----CCCC-CHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCe
Confidence 3457899999988 4443 566666653322 11 123679999998 999999999986 45677766 58
Q ss_pred eeeeecCCchhHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238 152 VATVQGLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP 227 (467)
Q Consensus 152 i~~~~t~ggt~al~l~~~~l~~~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 227 (467)
|++ |+|+++++.++ +...+.+|| +|++++|+|..|...++..|++++.++++.+ +++ .
T Consensus 94 i~~--t~G~~~al~~~--~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~---~l~--------~--- 155 (391)
T 3bwn_A 94 IVV--GTGSTQLCQAA--VHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAW---GFD--------K--- 155 (391)
T ss_dssp EEE--EEHHHHHHHHH--HHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEEST---TCC--------C---
T ss_pred EEE--eCChHHHHHHH--HHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHH---HcC--------C---
Confidence 999 99999999998 344467999 9999999999999999999999999988532 122 1
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
++++++++++||||||.+++ +|++.+.+++++||+||+|.+ +. .. ++ ....+++|+++||||.||
T Consensus 156 ~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~~--~~--~l---~~~~~~~i~~~S~SK~~g 220 (391)
T 3bwn_A 156 KGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---PH--YT--PI---TRRQDHDIMLFTFSKITG 220 (391)
T ss_dssp CSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---TT--TS--CC---CCCBCCSEEEEEHHHHHS
T ss_pred CCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---CC--CC--cc---ccCCCCeEEEEechhhcC
Confidence 46778888999999999997 354422223399999999973 11 01 11 113468999999999999
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH-------HHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW-------KAEMEMM 380 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-------~~~l~~~ 380 (467)
++|+|+||++ ++++++++. +.........+++.+.|.++..+|++.. .| .++++++
T Consensus 221 ~~GlRiG~~~--~~~~~l~~~------------l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~ 283 (391)
T 3bwn_A 221 HAGSRIGWAL--VKDKEVAKK------------MVEYIIVNSIGVSKESQVRTAKILNVLK---ETCKSESESENFFKYG 283 (391)
T ss_dssp CGGGCEEEEE--ECCHHHHHH------------HHHHHHHHHSSCCHHHHHHHHHHHHHHH---HHTTCCCTTTSHHHHH
T ss_pred CCccceEEEE--ecCHHHHHH------------HHHHhcccccCCCHHHHHHHHHHHhCcc---hhccccccHHHHHHHH
Confidence 9999999996 358888877 5554443456788899999988886542 11 3457889
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCccccc-------------CCcceEEecCCC-HHHHHHHHHcccEEEeCC-------
Q 012238 381 AGRIKNVRQKLFDSLSAKDKSGKDWSFIL-------------RQIGMFSFTGLN-KAQSDNMTNKWHVYMTKD------- 439 (467)
Q Consensus 381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~-------------~~~g~f~~~~l~-~~~~~~ll~~~gI~v~~g------- 439 (467)
++.++++|+.+.+.|+ +++ .+.+.. +++|+|+|+++. .+++.++++++||.+.||
T Consensus 284 ~~~~~~~~~~l~~~L~-~~~---~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~ 359 (391)
T 3bwn_A 284 REMMKNRWEKLREVVK-ESD---AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDK 359 (391)
T ss_dssp HHHHHHHHHHHHHHHH-TCS---SEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCT
T ss_pred HHHHHHHHHHHHHHHH-hCC---CcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCC
Confidence 9999999999999999 762 133332 456678998764 345677777789999986
Q ss_pred C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 440 G--RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 440 g--Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
+ |||++. +++++++++++|++++++
T Consensus 360 ~~iRis~~~-~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 360 KHVRVSMLS-REDVFNVFLERLANMKLI 386 (391)
T ss_dssp TEEEEESCS-CHHHHHHHHHHHHSCC--
T ss_pred CEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 2 999998 889999999999887653
No 79
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=3.1e-36 Score=295.73 Aligned_cols=309 Identities=16% Similarity=0.166 Sum_probs=238.2
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
++.|+|+.|.+ ..+. ++.+.+++.+.+.......| +..+.+++|+++++++... .+++++|++ |+|+++
T Consensus 19 ~~~i~l~~~~~----~~~~-~~~v~~a~~~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~---~~~~~~v~~--~~G~~~ 87 (335)
T 1uu1_A 19 RDKTYLALNEN----PFPF-PEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYLDTD---FLSKNNVSV--GNGADE 87 (335)
T ss_dssp CCSEEESSCCC----SSCC-CHHHHHHHHHTCCGGGGGSC-CCSSCHHHHHHHHHHHTCS---SCCGGGEEE--ESSHHH
T ss_pred CcceECCCCCC----CCCC-CHHHHHHHHHHhhhhhhhcC-CCCchHHHHHHHHHHcCCC---CCCHHHEEE--cCChHH
Confidence 36899999987 4443 78899999887632223567 4457999999999998643 344789999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 242 (467)
++.++ +..+ ||+|+++ |+|..+...++..|++++.+|++ +++++|++.+ ++++++++++|||||
T Consensus 88 al~~~---~~~~--gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l--------~~~~~v~l~~p~npt 151 (335)
T 1uu1_A 88 IIYVM---MLMF--DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV--------GEGDVVFIPNPNNPT 151 (335)
T ss_dssp HHHHH---HHHS--SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC--------CTTEEEEEESSCTTT
T ss_pred HHHHH---HHHh--CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc--------CCCCEEEEeCCCCCC
Confidence 99997 3334 8999999 99999999999999999999883 3567888887 256788889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCC
Q 012238 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS 322 (467)
Q Consensus 243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~ 322 (467)
|.+++.+++++|++.| | ++|+||+|.++..+ ... .+.+..++++++.||||.+|++|+|+||++ .+
T Consensus 152 G~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~----~~~---~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~---~~ 217 (335)
T 1uu1_A 152 GHVFEREEIERILKTG---A-FVALDEAYYEFHGE----SYV---DFLKKYENLAVIRTFSKAFSLAAQRVGYVV---AS 217 (335)
T ss_dssp CCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCC----CCG---GGGGTCSSEEEEEESTTTTTCGGGCCEEEE---EC
T ss_pred CCCCCHHHHHHHHHhC---C-EEEEECcchhhcch----hHH---HHhhhCCCEEEEecchhhcCCcccCeEEEE---eC
Confidence 9999999999998777 7 89999999877642 111 112345678999999999999999999996 57
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238 323 SDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG 402 (467)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~ 402 (467)
+++++. +...... .+++.++|.++..+|++. +++++.+++++++++++.+.|+ ++|
T Consensus 218 ~~~~~~------------l~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~-~~g-- 273 (335)
T 1uu1_A 218 EKFIDA------------YNRVRLP--FNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALR-EMG-- 273 (335)
T ss_dssp HHHHHH------------HHHHSCT--TCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHH-HHT--
T ss_pred HHHHHH------------HHHhcCC--CCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHH-HCC--
Confidence 887777 5554433 367788888888888653 2356778889999999999998 776
Q ss_pred CCcccccCCcceEEecCCC---H-HHHHHHHHcccEEEeCCC---eEEeccCChhhHHHHHHHHHHH
Q 012238 403 KDWSFILRQIGMFSFTGLN---K-AQSDNMTNKWHVYMTKDG---RISLAGLSLAKCEYLADAIIDS 462 (467)
Q Consensus 403 ~~~~~~~~~~g~f~~~~l~---~-~~~~~ll~~~gI~v~~gg---Ris~~~~~~~~i~~~~~~l~~~ 462 (467)
+.+. +.+++|+|+.+. . ++.+.+++ +||.+.++. |||++. ++++++++++|+++
T Consensus 274 --~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~iRis~~~--~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 274 --YRIT-DSRGNFVFVFMEKEEKERLLEHLRT-KNVAVRSFREGVRITIGK--REENDMILRELEVF 334 (335)
T ss_dssp --CCBC-CCCSSEEEEECCTHHHHHHHHHHHH-HTEEEEEETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred --cEEc-CCCCeEEEEECCCCCHHHHHHHHHH-CCEEEEECCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence 4444 445678888663 2 34555554 699998753 999975 57899999988764
No 80
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=7.3e-37 Score=310.08 Aligned_cols=327 Identities=12% Similarity=0.061 Sum_probs=248.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHh-cCC-CCcCCCCc-c---hHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGE-NKEYLPIE-G---LAAFNKVTAELLFGADNSVLKEQRVATVQ 156 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~-~~~-~~~Y~~~~-G---~~~lr~aia~~l~~~~~~~~~~~~i~~~~ 156 (467)
..+|+|+.|+| .+++ ++.+++++.+.+. .+. ...|.+.. | .++||+++|+++...++..+++++|++
T Consensus 56 ~~~i~l~~g~~----~~~~-~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~-- 128 (427)
T 2hox_A 56 GCSADVASGDG----LFLE-EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF-- 128 (427)
T ss_dssp TCCEECCSCCC----GGGH-HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred CceEEecCcCC----CCCC-CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--
Confidence 36899999988 4443 6788888887763 222 13498888 9 999999999999766566677899999
Q ss_pred cCCchhHHHHHHHHHHH--------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238 157 GLSGTGSLRLAAALIER--------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~--------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 228 (467)
|+|+++++.++ +... +.|||+|+++.|+|..|...++..|++++.+. +|++.+++.++ +
T Consensus 129 t~G~~~al~~~--~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~---~ 195 (427)
T 2hox_A 129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA--------GNAANYVNVSN---P 195 (427)
T ss_dssp ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE--------EEGGGGTTCSC---G
T ss_pred eCCHHHHHHHH--HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeec--------CCHHHHHHhhc---C
Confidence 99999999998 4445 67999999999999999999999999987543 56778877665 4
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (467)
+++++++++||||||.+++ +. ++ ++..|.|++|.+ .. . ++..+ . .+++|+++||||.+|+
T Consensus 196 ~~k~v~l~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~----~~-~---s~~~~-~-~~~~i~~~S~SK~~g~ 255 (427)
T 2hox_A 196 EQYIEMVTSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW----PH-Y---TPIKY-K-ADEDILLFTMSKFTGH 255 (427)
T ss_dssp GGEEEEEESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS----TT-T---SCCCS-C-BCCSEEEEEHHHHTSC
T ss_pred CceEEEEcCCCCCcccccH-HH-------Hc--CCCEEEeecccC----CC-C---Ccccc-C-CCceEEEEeChhcCCC
Confidence 6788899999999999999 42 22 566788887643 10 0 11011 1 4689999999999999
Q ss_pred CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChh-hHH----HHHHHHHHHHHH
Q 012238 309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPA-LFD----EWKAEMEMMAGR 383 (467)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~----~~~~~l~~~~~~ 383 (467)
+|+|+||++ +.++++++. +.+.......+++.+.|.++..+|.+.. +.+ .+++++++.+++
T Consensus 256 ~G~RiG~~~--~~~~~l~~~------------l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~ 321 (427)
T 2hox_A 256 SGSRFGWAL--IKDESVYNN------------LLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKK 321 (427)
T ss_dssp GGGCCEEEE--ECCHHHHHH------------HHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHH
T ss_pred CCceEEEEE--ECCHHHHHH------------HHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHH
Confidence 999999996 346888887 5555554456788899998888886531 100 123457788899
Q ss_pred HHHHHHHHHHHhhhcc-CC-------CC---CcccccCCcceEEecCCC---HHHHHHHHHcccEEEeCC-------C--
Q 012238 384 IKNVRQKLFDSLSAKD-KS-------GK---DWSFILRQIGMFSFTGLN---KAQSDNMTNKWHVYMTKD-------G-- 440 (467)
Q Consensus 384 ~~~~r~~l~~~l~~~~-g~-------~~---~~~~~~~~~g~f~~~~l~---~~~~~~ll~~~gI~v~~g-------g-- 440 (467)
++++++.+.+.|+ ++ |+ |. .+++..|++|+|+|+++. .++++++++++||.+.|| +
T Consensus 322 ~~~~~~~l~~~L~-~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~ 400 (427)
T 2hox_A 322 LRERWVNITALLD-QSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 400 (427)
T ss_dssp HHHHHHHHHHHHT-TSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEE
T ss_pred HHHHHHHHHHHHH-hCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEE
Confidence 9999999999998 76 32 11 034456788999998764 345778887789999986 2
Q ss_pred eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 441 RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 441 Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
|||++. +++++++++++|++++++
T Consensus 401 Ris~~~-~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 401 RLSLIK-TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp EEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred EEEecC-CHHHHHHHHHHHHHHHhh
Confidence 999998 889999999999998753
No 81
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.8e-34 Score=284.75 Aligned_cols=312 Identities=13% Similarity=0.124 Sum_probs=235.6
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
+++|||+.|.+ ..++ ++.+.+++.+.+.. ...|++..+ +++|+++|+++.. ++++|++ |+|+++
T Consensus 15 ~~~id~~~~~~----~~~~-~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~~------~~~~i~~--t~g~~~ 78 (350)
T 3fkd_A 15 SEIVNFSTTVW----TDGD-KDHLEKHLVENLNC--IRHYPEPDA-GTLRQMLAKRNSV------DNNAILV--TNGPTA 78 (350)
T ss_dssp -CCEECSCCSC----CCSC-CHHHHHHHHHTGGG--GGSCCCTTC-HHHHHHHHHHTTC------CGGGEEE--ESHHHH
T ss_pred ccEEEccCCCC----CCCC-CHHHHHHHHHhHhH--HhcCCCCcH-HHHHHHHHHHhCc------CHHHEEE--cCCHHH
Confidence 58999999987 4554 78899998887732 367866666 8999999999642 3789999 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeee-ecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++.++ +..+. ||+|+++.|+|..+...++..|++++.+++ ++. .++++ ++++++++++||||
T Consensus 79 al~~~---~~~l~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~-----------~~~~~v~i~~p~np 141 (350)
T 3fkd_A 79 AFYQI---AQAFR-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI--GEADF-----------SNMDFCWLCNPNNP 141 (350)
T ss_dssp HHHHH---HHHTT-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG--GGSCC-----------TTCSEEEEESSCTT
T ss_pred HHHHH---HHHHC-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc--ccCcc-----------CCCCEEEEeCCCCC
Confidence 99997 33344 999999999999999999999999999998 422 23443 34567788999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (467)
||.+++.+++.+|++.|+++ +||+||+|.++.++... .. ...+..+++++++||||.++++|+|+||++ .
T Consensus 142 tG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~-~~----~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~---~ 211 (350)
T 3fkd_A 142 DGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVI-RP----ADIKGRKNLVMVYSFSHAYGIPGLRIGYIV---A 211 (350)
T ss_dssp TCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCC-CG----GGGTTCSSEEEEEESHHHHSCGGGCCEEEE---C
T ss_pred cCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcch-hh----HHhhcCCCEEEEecCchhccCcchheEeEE---e
Confidence 99999999999998888765 99999999998865321 11 223445789999999999999999999996 6
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 401 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~ 401 (467)
++++++. +..... ..+++.+++.++..+|++.. .| .+..++.. ++++.+.+.|+ +++
T Consensus 212 ~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~l~~~~---~~---~~~~~~~~-~~~~~l~~~L~-~~~- 268 (350)
T 3fkd_A 212 NKDFMKR------------VAAFST--PWAVNALAIEAAKFILIHPA---QF---TLPIRKWQ-RNTVDFITALN-RLD- 268 (350)
T ss_dssp CHHHHHH------------HHTTCC--TTCSCHHHHHHHHHHHHCTT---TT---CCCHHHHH-HHHHHHHHHHH-HST-
T ss_pred CHHHHHH------------HHHhCC--CCCCCHHHHHHHHHHHhCHH---HH---HHHHHHHH-HHHHHHHHHHh-cCC-
Confidence 8888877 665544 34677888888888887653 11 12233333 77888999998 762
Q ss_pred CCCcccccCCcceEEecCC---CH-HHHHHHHHcccEEEeCCC----------eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 402 GKDWSFILRQIGMFSFTGL---NK-AQSDNMTNKWHVYMTKDG----------RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 402 ~~~~~~~~~~~g~f~~~~l---~~-~~~~~ll~~~gI~v~~gg----------Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
.+.+.++.++ |+|+.+ +. ++.+.|++++||.+.+|. |||++ +++++++++++|++++++
T Consensus 269 --~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 269 --GVEVHPSGTT-FFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp --TEEECCCSSS-EEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC
T ss_pred --CcEECCCCCc-EEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHH
Confidence 1566555554 555533 33 456666665799999861 99987 568899999999998765
No 82
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=2.9e-32 Score=273.76 Aligned_cols=327 Identities=12% Similarity=0.037 Sum_probs=237.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
++.|||+.|.|. +.+ .++.+.+++.+.+... ....|.+..|..++++++++++....| .+++++ |+||
T Consensus 43 ~~~idl~~~~~~---~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~--~~gg 112 (398)
T 3a2b_A 43 RRVLMFGSNSYL---GLT-TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAIL--FSTG 112 (398)
T ss_dssp EEEEECSCSCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEE--ESSH
T ss_pred ceEEEeeccccc---CCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEE--ECCH
Confidence 478999999761 332 3778888888876431 123455566777777777777654433 257888 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC-CcEEEEeCCCC
Q 012238 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILLHGCAH 239 (467)
Q Consensus 161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~i~i~~p~ 239 (467)
++++.++ +...+.+||.|+++.|+|..+...++..|++++.++. +|++.+++.+++..+ +++++++++|+
T Consensus 113 t~a~~~~--~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~ 183 (398)
T 3a2b_A 113 FQSNLGP--LSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIF 183 (398)
T ss_dssp HHHHHHH--HHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBC
T ss_pred HHHHHHH--HHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCC
Confidence 9999997 4444679999999999999999999999999988875 689999999985322 67899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe-EEEEecCccCcccCCCccceEEE
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIGAMNV 318 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~RiG~~~~ 318 (467)
||||.+++ +++|+++|++||+++|+||+|..+.++. ...++.......++ +++++||||.++++| ||++
T Consensus 184 nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~- 253 (398)
T 3a2b_A 184 SMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGH---KGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVA- 253 (398)
T ss_dssp TTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG---GGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEE-
T ss_pred CCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCC---CCCchHhhcCCCcCCeEEEecccccccCCC---cEEE-
Confidence 99999988 5678888999999999999998876642 11112122222234 699999999999888 9985
Q ss_pred ecCCHHHHhhhhhhhHHHHHHHHHhhc-cCccCCCchHHHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238 319 VCSSSDLAARCCEVAVIQVKSQLKRLA-RPMYSNPPVHGAR-IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 396 (467)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~ 396 (467)
.++++++. +.... .....+.+...|. ++..+|+. + +++++.+++++++++.+.+.|+
T Consensus 254 --~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~~~l~~------~-~~~~~~~~~~~~~~~~l~~~L~ 312 (398)
T 3a2b_A 254 --GDADVIDF------------LKHNARSVMFSASMTPASVASTLKALEI------I-QNEPEHIEKLWKNTDYAKAQLL 312 (398)
T ss_dssp --ECHHHHHH------------HHHHCHHHHSSBCCCHHHHHHHHHHHHH------H-HHCTHHHHHHHHHHHHHHHHHH
T ss_pred --eCHHHHHH------------HHHhcccceecCCCCHHHHHHHHHHHHH------H-hhCHHHHHHHHHHHHHHHHHHH
Confidence 67777776 44321 1122333444454 33444432 1 2356788999999999999999
Q ss_pred hccCCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC---------C--eEEecc-CChhhHHHHHHHH
Q 012238 397 AKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCEYLADAI 459 (467)
Q Consensus 397 ~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~~~i~~~~~~l 459 (467)
++| +++..+. |+|+|+.+. .++.++++++ ||.+.++ + ||+++. .+++++++++++|
T Consensus 313 -~~g----~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l 385 (398)
T 3a2b_A 313 -DHG----FDLGATE-SPILPIFIRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKM 385 (398)
T ss_dssp -HTT----CCBCSCC-SSEEEEECCCHHHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHH
T ss_pred -hcC----CCcCCCC-CCEEEEEcCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHH
Confidence 776 4566665 567777553 2345666665 9999886 2 999985 4889999999999
Q ss_pred HHHHHhc
Q 012238 460 IDSYHNV 466 (467)
Q Consensus 460 ~~~l~~~ 466 (467)
+++++++
T Consensus 386 ~~~l~~~ 392 (398)
T 3a2b_A 386 VKVFKQA 392 (398)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998764
No 83
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=1.2e-30 Score=263.19 Aligned_cols=324 Identities=12% Similarity=0.086 Sum_probs=236.4
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC------CCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~------~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
+.|+|+.|.+ + + .++.+.+++.+.+... ....|.+ ..+..++|+++++++... +++++++
T Consensus 28 ~~i~l~~~~~----~-~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~- 95 (420)
T 1t3i_A 28 PLVYLDNAAT----S-Q-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-----SPREIVY- 95 (420)
T ss_dssp ECEECBTTTC----C-C-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE-
T ss_pred ceEEecCCcc----C-C-CCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE-
Confidence 5899999987 4 3 3788889988877531 1234543 478899999999997542 2678998
Q ss_pred ecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238 156 QGLSGTGSLRLAAALIER----YFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP 227 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~----~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 227 (467)
|+||++++.++ +... +.+||+|+++.|+|.. +...++..|++++.++.+ .++.+|++.+++.++
T Consensus 96 -~~g~t~a~~~~--~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~--- 167 (420)
T 1t3i_A 96 -TRNATEAINLV--AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLS--- 167 (420)
T ss_dssp -ESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCC---
T ss_pred -cCChHHHHHHH--HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhC---
Confidence 99999999998 3333 5799999999999988 567777889999999984 456799999999987
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
++++++++++|+||||.+++ +++|.++|+++|+++|+|++|...... .+ +..+ ..++++.|+||.+|
T Consensus 168 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~~---~~~~----~~di~~~s~sK~~~ 234 (420)
T 1t3i_A 168 EKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP---LD---VQLI----DCDWLVASGHKMCA 234 (420)
T ss_dssp TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CC---HHHH----TCSEEEEEGGGTTS
T ss_pred CCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc---Cc---hhhc----CCCEEEEehhhhcC
Confidence 57789999999999999999 567888899999999999998754321 11 1111 35688999999999
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--------------------ccCCCchHHHHHHHH-HhCC
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--------------------MYSNPPVHGARIVAN-VVGN 366 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~-~L~~ 366 (467)
++| +||++ .++++++. +...... ...+.+.+.+.++.. ++..
T Consensus 235 ~~g--~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 297 (420)
T 1t3i_A 235 PTG--IGFLY---GKEEILEA------------MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDY 297 (420)
T ss_dssp CTT--CEEEE---ECHHHHHH------------SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHH
T ss_pred CCc--eEEEE---EchHHHhh------------cCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHH
Confidence 888 89995 66777665 4433211 112344555554432 2211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC------cceEEec--CCCHHHHHHHHHcccEEEeC
Q 012238 367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ------IGMFSFT--GLNKAQSDNMTNKWHVYMTK 438 (467)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~------~g~f~~~--~l~~~~~~~ll~~~gI~v~~ 438 (467)
+ + ...++++.++++++++++.+.|+ ++. ++++..+. ++++.|. +.+.+.+.+.++++||.+.+
T Consensus 298 --~-~--~~~~~~~~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 368 (420)
T 1t3i_A 298 --L-T--DLGMENIHNYEVELTHYLWQGLG-QIP---QLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRS 368 (420)
T ss_dssp --H-H--HHCHHHHHHHHHHHHHHHHHHHH-TCT---TEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBC
T ss_pred --H-H--HhHHHHHHHHHHHHHHHHHHHHH-hCC---CeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEee
Confidence 1 0 11256788889999999999998 762 15665553 6666553 23444455566667999988
Q ss_pred C-------------C---eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 439 D-------------G---RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 439 g-------------g---Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
| . ||+++. .+++++++++++|+++++.+
T Consensus 369 ~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 369 GHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp SCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6 2 999885 37899999999999998765
No 84
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=1.3e-30 Score=259.75 Aligned_cols=315 Identities=13% Similarity=0.076 Sum_probs=223.5
Q ss_pred CCCCchHHHHHHHHHHHhcCC-------CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHH
Q 012238 98 LQPYVLDVVKKAENLMLERGE-------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAAL 170 (467)
Q Consensus 98 ~~p~~~~~v~~a~~~~~~~~~-------~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~ 170 (467)
..+++++.+.+++.+.+.... ...|.+..+..++|+++++++.. ++++|++ |+||++++.++...
T Consensus 9 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--~~g~t~a~~~~~~~ 80 (384)
T 1eg5_A 9 ATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGV------SPSEIFF--TSCATESINWILKT 80 (384)
T ss_dssp TCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTS------CGGGEEE--ESCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCC------CCCeEEE--ECCHHHHHHHHHHh
Confidence 334458899999988875421 01133456789999999999742 2678988 99999999998433
Q ss_pred HHH--hCCCCEEEEcCCCCcchHHHH---hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012238 171 IER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID 245 (467)
Q Consensus 171 l~~--~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~ 245 (467)
+.. ..+||+|+++.|+|+.+...+ +..|++++.++.+ .++.+|++.+++.++ ++++++++++|+||||.+
T Consensus 81 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~ 155 (384)
T 1eg5_A 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTI 155 (384)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBB
T ss_pred hhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC--CCCccCHHHHHHHhC---CCCeEEEEECCCCCcccc
Confidence 211 168999999999999876655 7789999999884 356799999999987 477889999999999999
Q ss_pred CCHHHHHHHHHHHHhcC--CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238 246 PTPEQWEKIADVIQEKN--HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS 323 (467)
Q Consensus 246 ~~~~~l~~l~~~~~~~~--~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~ 323 (467)
++. ++|.++|+++| ++||+||+|. +.. ...+ + .....++++.|+||.+|++| +||++ .++
T Consensus 156 ~~~---~~i~~l~~~~~~~~~li~Dea~~-~~~--~~~~---~----~~~~~di~~~s~sK~~g~~G--~G~~~---~~~ 217 (384)
T 1eg5_A 156 QPV---EDVTRIVKKKNKETLVHVDAVQT-IGK--IPFS---L----EKLEVDYASFSAHKFHGPKG--VGITY---IRK 217 (384)
T ss_dssp CCH---HHHHHHHHHHCTTCEEEEECTTT-TTT--SCCC---C----TTTCCSEEEEEGGGGTSCTT--CEEEE---ECT
T ss_pred cCH---HHHHHHHHhcCCceEEEEEhhhh-cCC--cccC---c----hhcCCCEEEecHHHhcCCCc--eEEEE---EcC
Confidence 995 57777799999 9999999986 221 1111 1 11135688999999999888 79996 444
Q ss_pred HH--HhhhhhhhHHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238 324 DL--AARCCEVAVIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK 398 (467)
Q Consensus 324 ~~--~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~ 398 (467)
++ ... +... ......+++...+.++..+|+. +.+++++.+++++++++++.+.|+ +
T Consensus 218 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~l~~~L~-~ 278 (384)
T 1eg5_A 218 GVPIRPL------------IHGGGQERGLRSGTQNVPGIVGAARAMEI------AVEELSEAAKHMEKLRSKLVSGLM-N 278 (384)
T ss_dssp TSCCCCS------------BCSSCTTTTTBCSCCCHHHHHHHHHHHHH------HHHTHHHHHHHHHHHHHHHHHHHH-T
T ss_pred CCccccc------------cccCcccccccCCCCChHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHhC-C
Confidence 43 222 1111 0112345677777776666643 123467888999999999999998 6
Q ss_pred cCCCCCcccccCC----cc--eEEecCCCHHHHHHHHHcccEEEeCC-------------------------C--eEEec
Q 012238 399 DKSGKDWSFILRQ----IG--MFSFTGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLA 445 (467)
Q Consensus 399 ~g~~~~~~~~~~~----~g--~f~~~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~ 445 (467)
.| +++..+. .. .|.+.+.+.+.+.+.+.++||.+.+| + ||+++
T Consensus 279 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~ 354 (384)
T 1eg5_A 279 LG----AHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLC 354 (384)
T ss_dssp TT----CEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECC
T ss_pred CC----eEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECC
Confidence 55 4554432 11 22233445554444445679999873 2 99988
Q ss_pred c-CChhhHHHHHHHHHHHHHhc
Q 012238 446 G-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 446 ~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
. .+++++++++++|+++++++
T Consensus 355 ~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 355 KYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 3 37899999999999998765
No 85
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=2.7e-30 Score=259.42 Aligned_cols=325 Identities=13% Similarity=0.077 Sum_probs=234.9
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CC------cCCCCcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NK------EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT 154 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~------~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~ 154 (467)
++.++|..|.+ + + .++.+.+++.+.+.... .. .|.+..+..++|+++++++... ++++|++
T Consensus 22 ~~~i~l~~~~~----~-~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~ 90 (406)
T 1kmj_A 22 LPLAYLDSAAS----A-Q-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVF 90 (406)
T ss_dssp EECEECCTTTC----C-C-CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE
T ss_pred CceEEecCCcc----C-C-CCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE
Confidence 35899998877 3 3 37788999888875421 11 1235678899999999997542 2678999
Q ss_pred eecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC
Q 012238 155 VQGLSGTGSLRLAAALIER----YFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA 226 (467)
Q Consensus 155 ~~t~ggt~al~l~~~~l~~----~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 226 (467)
|+|+++++.++ +... +.+||+|+++.|+|.. |...++..|++++.++.+ .++.+|++.+++.++
T Consensus 91 --~~g~t~a~~~~--~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~-- 162 (406)
T 1kmj_A 91 --VRGTTEGINLV--ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFD-- 162 (406)
T ss_dssp --ESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCC--
T ss_pred --eCChhHHHHHH--HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecC--CCCCcCHHHHHHHhc--
Confidence 99999999998 3333 5799999999999864 344567789999999884 356799999999987
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306 (467)
Q Consensus 227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 306 (467)
++++++++++|+||||.+++ +++|+++|++||+++|+||+|...... .+ +.. ...++++.|+||.+
T Consensus 163 -~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~---~~---~~~----~~~d~~~~s~~K~~ 228 (406)
T 1kmj_A 163 -EKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP---VD---VQA----LDCDFYVFSGHKLY 228 (406)
T ss_dssp -TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CC---HHH----HTCSEEEEEGGGTT
T ss_pred -cCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC---Cc---ccc----cCCCEEEEEchhcc
Confidence 57789999999999999999 668888899999999999998754321 11 111 13578899999999
Q ss_pred ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC---------------------ccCCCchHHHHHHH-HHh
Q 012238 307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP---------------------MYSNPPVHGARIVA-NVV 364 (467)
Q Consensus 307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~~~~~-~~L 364 (467)
|++| +||++ .++++++. +...... ...+.+.+.+.++. .++
T Consensus 229 g~~G--~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 291 (406)
T 1kmj_A 229 GPTG--IGILY---VKEALLQE------------MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAAL 291 (406)
T ss_dssp SCTT--CEEEE---ECHHHHHH------------CCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHH
T ss_pred CCCC--cEEEE---EeHHHHhh------------cCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHH
Confidence 9888 89996 56777665 4332210 11233445555443 233
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC--CcceEEec--CCCHHHHHHHHHcccEEEeCC-
Q 012238 365 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--GLNKAQSDNMTNKWHVYMTKD- 439 (467)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~f~~~--~l~~~~~~~ll~~~gI~v~~g- 439 (467)
+. +. ...+++.+++++++++++.+.|+ ++. ++++..+ .++++.|. +.+.+.+.+.+.++||.+.+|
T Consensus 292 ~~--~~---~~~~~~~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~ 362 (406)
T 1kmj_A 292 EY--VS---ALGLNNIAEYEQNLMHYALSQLE-SVP---DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGH 362 (406)
T ss_dssp HH--HH---HHCHHHHHHHHHHHHHHHHHHHT-TST---TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEEC
T ss_pred HH--HH---HcCHHHHHHHHHHHHHHHHHHHh-cCC---CeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEecc
Confidence 21 11 12356788889999999999998 762 1566666 78877664 334544445556679998753
Q ss_pred -------------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238 440 -------------G--RISLAGL-SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 -------------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||+++.. +++++++++++|+++++.+
T Consensus 363 ~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 363 HCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 3 9998864 7899999999999998765
No 86
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=2.9e-30 Score=258.88 Aligned_cols=326 Identities=12% Similarity=0.073 Sum_probs=229.8
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-C-----CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
+.+.|||+.|.|. +. ..++.+.+++.+.+.. + ....|....+..++|+.+++++.. ++.+++
T Consensus 42 g~~~id~~~~~~~---g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~- 109 (399)
T 3tqx_A 42 EKEVLNFCANNYL---GL-ADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT-------DDTILY- 109 (399)
T ss_dssp TEEEEECSSCCTT---SC-TTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred CeeEEEeeccCcc---cc-cCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-------CcEEEE-
Confidence 3478999999652 22 2367788887776643 1 111233455689999999999742 335555
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC---CcEE
Q 012238 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFI 232 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~ 232 (467)
.+|++++.++ +...+.+||.|+++.|+|..+...++..|++++.++. +|++.+++.+++... ++++
T Consensus 110 --~sGt~a~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 110 --SSCFDANGGL--FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp --SCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred --CchHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence 4568888886 4445679999999999999999999999999988875 577888888875322 7889
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh-cCCeEEEEecCccCcccCCC
Q 012238 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAE 311 (467)
Q Consensus 233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~ 311 (467)
+++++|+||||.+++ +++|+++|++||+++|+||+|....++. ...+...... ....+++++|+||.++ |+
T Consensus 179 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~~di~~~s~sK~~~--g~ 250 (399)
T 3tqx_A 179 IATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE---NGRGTPEYCGVADRVDILTGTLGKALG--GA 250 (399)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST---TSCCHHHHHTCTTCCSEEEEESSSSSC--SS
T ss_pred EEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC---CCCchHHhhCCCCCCcEEEecchHhcc--cC
Confidence 999999999999999 6688888999999999999996322221 1111212222 1245699999999998 34
Q ss_pred ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238 312 RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ 389 (467)
Q Consensus 312 RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~ 389 (467)
+.||++ .++++++. +....... ....+...+.++...++.. .+++++.+++++++++
T Consensus 251 ~gG~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~ 309 (399)
T 3tqx_A 251 SGGYTS---GHKEIIEW------------LRNRSRPYLFSNTVAPVIVATSLKVLELL------KTEGPQLRKQLQENSR 309 (399)
T ss_dssp CCEEEE---ECHHHHHH------------HHHHCHHHHSSCCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHH
T ss_pred ceEEEE---cCHHHHHH------------HHHhCcceeccCCCcHHHHHHHHHHHHHH------hhccHHHHHHHHHHHH
Confidence 459985 77888777 44332211 2244555544554444311 1346788999999999
Q ss_pred HHHHHhhhccCCCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeCC-------C----eEEec-cCChhhH
Q 012238 390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD-------G----RISLA-GLSLAKC 452 (467)
Q Consensus 390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g-------g----Ris~~-~~~~~~i 452 (467)
++.+.|+ ++| +++.++.++ |+|+.+ ..++.+++++ +||.+.++ + ||+++ ..+++++
T Consensus 310 ~l~~~L~-~~g----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i 382 (399)
T 3tqx_A 310 YFRAGME-KLG----FQLVPGNHP-IIPVMLGDAQLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQL 382 (399)
T ss_dssp HHHHHHH-HHT----CCBCCCSSS-EEEEEEECHHHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHH
T ss_pred HHHHHHH-HcC----CCcCCCCCC-EEEEEeCCHHHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHH
Confidence 9999999 887 466666665 555433 2345666666 59999843 2 99987 4488999
Q ss_pred HHHHHHHHHHHHhc
Q 012238 453 EYLADAIIDSYHNV 466 (467)
Q Consensus 453 ~~~~~~l~~~l~~~ 466 (467)
++++++|+++++++
T Consensus 383 ~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 383 DRAIEAFGQVGKKL 396 (399)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 87
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.97 E-value=6.9e-30 Score=257.04 Aligned_cols=313 Identities=12% Similarity=0.066 Sum_probs=219.8
Q ss_pred cEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchH---HHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLA---AFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 85 ~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~---~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
..++++|.| |....+++.+.+.+++.........+.|.+ .|.+ ++++++++++.. +++++ +.||+
T Consensus 20 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g~--------~~~i~--~~~g~ 87 (404)
T 1e5e_A 20 DQFGAAIPP-IYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEKT--------EACVA--TSSGM 87 (404)
T ss_dssp CTTCCSSCC-CCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHH
T ss_pred CCCCCcCCC-CcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhCC--------CcEEE--eCChH
Confidence 356888887 433333444555555433222222366865 5666 999999999743 25666 78889
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~ 237 (467)
+++.++ +...+.+||+|+++.|+|..+.. .++..|++++.++.. |++.+++.++ ++++++++++
T Consensus 88 ~ai~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~---~~t~~v~l~~ 155 (404)
T 1e5e_A 88 GAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMK---PNTKIVYFET 155 (404)
T ss_dssp HHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCC---TTEEEEEEES
T ss_pred HHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcC---CCCcEEEEEC
Confidence 999997 44457799999999999999888 788899999988762 7889999887 5788999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ce
Q 012238 238 AHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GA 315 (467)
Q Consensus 238 p~NPTG~~~~~~~l~~l~~~~~~-~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~ 315 (467)
|+||||.+++ +++|+++|++ +|+++|+||+|..+.+.. ++ . .+.++++.|+||.++++|+|+ ||
T Consensus 156 p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~------~~----~-~~~di~~~S~sK~~~~~g~ri~G~ 221 (404)
T 1e5e_A 156 PANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN------PV----D-FGVDVVVHSATKYINGHTDVVAGL 221 (404)
T ss_dssp SCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG----G-GTCSEEEEETTTTTTCSSCCCCEE
T ss_pred CCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC------cc----c-cCCEEEEEcCccccCCCCCCeEEE
Confidence 9999999997 6688888999 999999999999887531 11 1 146799999999999999998 99
Q ss_pred EEEecCCHHHHh-hhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 316 MNVVCSSSDLAA-RCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 393 (467)
Q Consensus 316 ~~~v~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~ 393 (467)
++ .+++.++ . +....... ..+.+.+.+.++...|++.. ...++..++.+.+.+
T Consensus 222 ~~---~~~~~~~~~------------l~~~~~~~~g~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~l~~ 276 (404)
T 1e5e_A 222 IC---GKADLLQQI------------RMVGIKDITGSVISPHDAWLITRGLSTLN----------IRMKAESENAMKVAE 276 (404)
T ss_dssp EE---ECHHHHHHH------------HHTCCCCCCCCCCCHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHHH
T ss_pred EE---ECHHHHHHH------------HHHHHHhCCCCCCCHHHHHHHHHhHhHHH----------HHHHHHHHHHHHHHH
Confidence 96 6676666 5 66655554 44677778888777776531 122223334444444
Q ss_pred HhhhccC------CCC-----CcccccCC----cceEEecCCC--HHHHHHHHHcccEEEeC------------------
Q 012238 394 SLSAKDK------SGK-----DWSFILRQ----IGMFSFTGLN--KAQSDNMTNKWHVYMTK------------------ 438 (467)
Q Consensus 394 ~l~~~~g------~~~-----~~~~~~~~----~g~f~~~~l~--~~~~~~ll~~~gI~v~~------------------ 438 (467)
.++ +.. .++ .+++..++ ++++.| .+. .+.+.+++++.||.+..
T Consensus 277 ~l~-~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~ 354 (404)
T 1e5e_A 277 YLK-SHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTH 354 (404)
T ss_dssp HHH-TCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTT
T ss_pred HHH-hCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCCHHHHHHHHHhCCCceeccCCCCcceeeeccccccc
Confidence 444 321 010 13333333 888877 443 24577788888874332
Q ss_pred -----------C---C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 439 -----------D---G--RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 439 -----------g---g--Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
| | |||++. ++++.++++|+++++.
T Consensus 355 ~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 355 AVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDA 394 (404)
T ss_dssp TTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 1 3 999987 7889999999888764
No 88
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=7.1e-30 Score=254.96 Aligned_cols=320 Identities=13% Similarity=0.092 Sum_probs=226.3
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC---CCcC--CCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE---NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~---~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
+.+.|||+.|.+ .+++ .++.+.+++.+.+.. +. ...| ....+..++|+++++++.. ++.+++
T Consensus 38 g~~~id~~~~~~---~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~~- 105 (384)
T 1bs0_A 38 DRQYLNFSSNDY---LGLS-HHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY-------SRALLF- 105 (384)
T ss_dssp TEEEEECSCCCT---TSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred CceEEEeeccCc---cCCC-CCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEe-
Confidence 347899999864 1322 377888888887743 21 1223 4457899999999999732 334544
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
.+|++++.++ +...+.+||.|+++.|+|..+...++..|++++.+|. .|++.+++.+++..++++++++
T Consensus 106 --~sGt~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 106 --ISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp --SCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred --CCcHHHHHHH--HHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEE
Confidence 5558999987 4444679999999999999999999999999988874 5899999999864334789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA 315 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 315 (467)
++||||||.+++ +++|+++|++||+++|+||+|..+.++. ............ ..++++||||.++++| ||
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~-~di~~~s~sK~~~~~G---G~ 244 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKVK-PELLVVTFGKGFGVSG---AA 244 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTCC-CSEEEEESSSTTSSCC---EE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecC---CCCchHHhcCCC-CcEEEeeccchhhccC---cE
Confidence 999999999999 5578888999999999999997665431 001111122222 3488999999999777 99
Q ss_pred EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 012238 316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLF 392 (467)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~ 392 (467)
++ .++++++. +....... ..+++.+.+.++..+|+.. .+ .+++.+++++++++++.
T Consensus 245 ~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~~l~ 303 (384)
T 1bs0_A 245 VL---CSSTVADY------------LLQFARHLIYSTSMPPAQAQALRASLAVI------RSDEGDARREKLAALITRFR 303 (384)
T ss_dssp EE---ECHHHHHH------------HHHHCHHHHSSBCCCHHHHHHHHHHHHHH------HSHHHHHHHHHHHHHHHHHH
T ss_pred EE---eCHHHHHH------------HHHhchhhhcCCCCCHHHHHHHHHHHHHH------hccccHHHHHHHHHHHHHHH
Confidence 85 57877776 33322111 2246666666665555321 11 35678888999999999
Q ss_pred HHhhhccCCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC---------C--eEEeccC-ChhhHHHH
Q 012238 393 DSLSAKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAGL-SLAKCEYL 455 (467)
Q Consensus 393 ~~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~~-~~~~i~~~ 455 (467)
+.|+ ++| +++.++ ++.|+|+.+. .++.+.+++ +||.+.++ + ||+++.. ++++++++
T Consensus 304 ~~L~-~~g----~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~ 376 (384)
T 1bs0_A 304 AGVQ-DLP----FTLADS-CSAIQPLIVGDNSRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRL 376 (384)
T ss_dssp HHHT-TSS----CEECSC-CSSBCCEEEESHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHH
T ss_pred HHHH-hcC----CcccCC-CCCEEEEEeCCHHHHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHH
Confidence 9999 776 455544 4445555432 234556665 59999864 2 8998743 78999999
Q ss_pred HHHHHHH
Q 012238 456 ADAIIDS 462 (467)
Q Consensus 456 ~~~l~~~ 462 (467)
+++|+++
T Consensus 377 ~~~l~~~ 383 (384)
T 1bs0_A 377 LEVLHGN 383 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999875
No 89
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.4e-29 Score=252.65 Aligned_cols=316 Identities=13% Similarity=0.067 Sum_probs=223.5
Q ss_pred CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE
Q 012238 100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK 179 (467)
Q Consensus 100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~ 179 (467)
.++++.+.+++.+.+. ..|.+. ..++++.+++++....|.+ +++++++ |+||++++.++ +...+.+||+
T Consensus 29 ~~~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~--~~~l~~~gd~ 97 (386)
T 2dr1_A 29 VACFPEVLEIMKVQMF----SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEAS--IRNGVSKGGK 97 (386)
T ss_dssp CCCCHHHHHHTTSCCC----CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHH--HHHHSCTTCE
T ss_pred cCCcHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHH--HHHhhcCCCe
Confidence 3447788877755432 245432 2455555555544333333 3567888 99999999998 3444679999
Q ss_pred EEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238 180 VLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 257 (467)
Q Consensus 180 Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~ 257 (467)
|++++|+|.. +...++..|++++.++.+ .++.+|++.+++.+++. ++++++++++|+||||.+.+ +++|+++
T Consensus 98 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~l 171 (386)
T 2dr1_A 98 VLVTIIGAFGKRYKEVVESNGRKAVVLEYE--PGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP---LPELAKV 171 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC---HHHHHHH
T ss_pred EEEEcCCchhHHHHHHHHHhCCceEEEecC--CCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC---HHHHHHH
Confidence 9999999988 888999999999999984 35679999999999642 35678888999999999987 5678888
Q ss_pred HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHH
Q 012238 258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQV 337 (467)
Q Consensus 258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~ 337 (467)
|++||+++|+||+|..+... . + + .....++++.|+||.++.++ ++||++ .++++++. +
T Consensus 172 ~~~~~~~li~D~a~~~~~~~-~--~---~----~~~~~di~~~s~sK~~~~~~-g~G~~~---~~~~~~~~--------~ 229 (386)
T 2dr1_A 172 AKEHDKLVFVDAVSAMGGAD-I--K---F----DKWGLDVVFSSSQKAFGVPP-GLAIGA---FSERFLEI--------A 229 (386)
T ss_dssp HHHTTCEEEEECTTTBTTBC-C--C---T----TTTTCSEEEEETTSTTCCCS-SCEEEE---ECHHHHHH--------H
T ss_pred HHHcCCeEEEEccccccCcc-c--c---c----cccCCcEEEEeccccccCCC-ceEEEE---ECHHHHHH--------H
Confidence 99999999999998866542 1 1 1 11245789999999998663 389996 56777665 2
Q ss_pred H------------HHHHhh--ccCccCCCchHHHHHHHHHhCChhhHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccCC
Q 012238 338 K------------SQLKRL--ARPMYSNPPVHGARIVANVVGNPALFDEWKAE--MEMMAGRIKNVRQKLFDSLSAKDKS 401 (467)
Q Consensus 338 ~------------~~l~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--l~~~~~~~~~~r~~l~~~l~~~~g~ 401 (467)
. ..+... ......+++...+.++..+|+. +.+. +++.+++++++++++.+.|+ ++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~g~~~~~~~~~~~~~~~l~~~L~-~~g- 301 (386)
T 2dr1_A 230 EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRI------IEKMGGKEKWLEMYEKRAKMVREGVR-EIG- 301 (386)
T ss_dssp TTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHHH-HTT-
T ss_pred hcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHHHH-HcC-
Confidence 1 011211 1222345677777777666532 1222 66788999999999999999 776
Q ss_pred CCCcccccCC---cceEEecC----CCHH-HHHHHHHcccEEEeCC------C--eEEecc-CChhhHHHHHHHHHHHHH
Q 012238 402 GKDWSFILRQ---IGMFSFTG----LNKA-QSDNMTNKWHVYMTKD------G--RISLAG-LSLAKCEYLADAIIDSYH 464 (467)
Q Consensus 402 ~~~~~~~~~~---~g~f~~~~----l~~~-~~~~ll~~~gI~v~~g------g--Ris~~~-~~~~~i~~~~~~l~~~l~ 464 (467)
+++..+. .+.++|+. .+.+ +.++++++ ||.+.+| + ||+++. .+++++++++++|+++++
T Consensus 302 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 377 (386)
T 2dr1_A 302 ---LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVIN 377 (386)
T ss_dssp ---CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred ---CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 4555553 24555553 3444 45666665 9999886 2 999984 488999999999999987
Q ss_pred hc
Q 012238 465 NV 466 (467)
Q Consensus 465 ~~ 466 (467)
++
T Consensus 378 ~~ 379 (386)
T 2dr1_A 378 EL 379 (386)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 90
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=1.1e-29 Score=254.32 Aligned_cols=308 Identities=14% Similarity=0.116 Sum_probs=217.8
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCchhHHHHHHHHHHHhCCCCEE
Q 012238 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKV 180 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~al~l~~~~l~~~~~gd~V 180 (467)
+++.+.+++.+.+. ..|.+. ..++++.+++++....|. +++ ++++ |+||++++.++ +...+.+||+|
T Consensus 45 ~~~~v~~a~~~~~~----~~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~--t~g~t~al~~~--~~~~~~~gd~V 112 (393)
T 1vjo_A 45 AHPSVLQAMNVSPV----GHLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAV--SGTGTAAMEAT--IANAVEPGDVV 112 (393)
T ss_dssp CCHHHHHHHSSCCC----CTTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEE--SSCHHHHHHHH--HHHHCCTTCEE
T ss_pred CCHHHHHHHhcccc----cccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEE--eCchHHHHHHH--HHhccCCCCEE
Confidence 47888888766542 245432 344555555554333232 356 8988 99999999998 44446799999
Q ss_pred EEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012238 181 LISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258 (467)
Q Consensus 181 lv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~ 258 (467)
++++|+|.. +...++..|++++.++.+ .++.+|++.+++.+++. +++++++++|+||||.+++ +++|+++|
T Consensus 113 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l~ 185 (393)
T 1vjo_A 113 LIGVAGYFGNRLVDMAGRYGADVRTISKP--WGEVFSLEELRTALETH--RPAILALVHAETSTGARQP---LEGVGELC 185 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHHH
T ss_pred EEEcCChhHHHHHHHHHHcCCceEEEecC--CCCCCCHHHHHHHHhhC--CceEEEEeccCCCcceecc---HHHHHHHH
Confidence 999999998 999999999999999984 35679999999999731 5668888999999999987 56788889
Q ss_pred HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHH
Q 012238 259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVK 338 (467)
Q Consensus 259 ~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~ 338 (467)
+++|+++|+||+|. +.. ...+ + .....++++.|+||.++.+| |+||++ .++++++.
T Consensus 186 ~~~~~~li~Dea~~-~g~--~~~~---~----~~~~~di~~~s~sK~l~~~~-~~G~l~---~~~~~~~~---------- 241 (393)
T 1vjo_A 186 REFGTLLLVDTVTS-LGG--VPIF---L----DAWGVDLAYSCSQKGLGCSP-GASPFT---MSSRAIEK---------- 241 (393)
T ss_dssp HHHTCEEEEECTTT-TTT--SCCC---T----TTTTCSEEECCSSSTTCSCS-SCEEEE---ECHHHHHH----------
T ss_pred HHcCCEEEEECCcc-ccC--cCCc---c----cccCccEEEEcCcccccCCC-ceEEEE---ECHHHHHH----------
Confidence 99999999999988 321 1111 1 12245788999999998787 999996 66777665
Q ss_pred HHHHhh-------------------ccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238 339 SQLKRL-------------------ARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK 398 (467)
Q Consensus 339 ~~l~~~-------------------~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~ 398 (467)
++.. ...... +++...+.++..+|+.. . ...+++.+++++++++++.+.|+ +
T Consensus 242 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~--~---~~~~~~~~~~~~~~~~~l~~~L~-~ 313 (393)
T 1vjo_A 242 --LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI--A---QEGLANCWQRHQKNVEYLWERLE-D 313 (393)
T ss_dssp --HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH--H---HHCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred --HhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHH--H---HccHHHHHHHHHHHHHHHHHHHH-H
Confidence 4221 001122 56777777776666421 1 22367888999999999999999 7
Q ss_pred cCCCCCcccccCCc---ceEEec----CCCHH-HHHHHHHcccEEEeCC------C--eEEe-c-cCChhhHHHHHHHHH
Q 012238 399 DKSGKDWSFILRQI---GMFSFT----GLNKA-QSDNMTNKWHVYMTKD------G--RISL-A-GLSLAKCEYLADAII 460 (467)
Q Consensus 399 ~g~~~~~~~~~~~~---g~f~~~----~l~~~-~~~~ll~~~gI~v~~g------g--Ris~-~-~~~~~~i~~~~~~l~ 460 (467)
+| +++..+.+ +.++++ +.+.+ +.+.+++++||.+.+| + ||++ + ..+++++++++++|+
T Consensus 314 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~ 389 (393)
T 1vjo_A 314 IG----LSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALE 389 (393)
T ss_dssp TT----CCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred cC----CcccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHH
Confidence 76 45555543 223333 23444 4566666559999886 2 9994 3 225667999999999
Q ss_pred HHHH
Q 012238 461 DSYH 464 (467)
Q Consensus 461 ~~l~ 464 (467)
++++
T Consensus 390 ~~l~ 393 (393)
T 1vjo_A 390 QVLR 393 (393)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8763
No 91
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.97 E-value=7.8e-30 Score=251.04 Aligned_cols=321 Identities=13% Similarity=0.031 Sum_probs=214.7
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (467)
++|+|+.+.+ .. +++.+++++.+... + ...|.+..+..+||+++++++.. +++++ +.||+++
T Consensus 4 ~~i~~~~~~~----~~--p~~~~~~a~~~~~~-~-~~~y~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a 65 (347)
T 1jg8_A 4 MMIDLRSDTV----TK--PTEEMRKAMAQAEV-G-DDVYGEDPTINELERLAAETFGK--------EAALF--VPSGTMG 65 (347)
T ss_dssp -CEECSCGGG----CC--CCHHHHHHHHTCCC-C-CGGGTCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHH
T ss_pred eEEEeccccC----CC--CCHHHHHHHhcCCC-C-CcccCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcHHH
Confidence 6799998876 33 36788888765432 2 24687888999999999999743 24566 7888999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcc-hH--HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCC
Q 012238 164 LRLAAALIERYFPGAKVLISSPTWGN-HK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGC 237 (467)
Q Consensus 164 l~l~~~~l~~~~~gd~Vlv~~P~y~~-~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~ 237 (467)
+.++ +...+.|||+|++++|+|.. |. ..++..|++++.+ .. +++.+|++.+++.+++. .++++++++++
T Consensus 66 ~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~ 140 (347)
T 1jg8_A 66 NQVS--IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN 140 (347)
T ss_dssp HHHH--HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEES
T ss_pred HHHH--HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEec
Confidence 8876 44456799999999999864 32 3567789998888 42 24568999999998741 12688999999
Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC--CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238 238 AHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF--ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314 (467)
Q Consensus 238 p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG 314 (467)
||||| |.+++.+++++|+++|+++|+++|+|++|... .+.+ .+. ..+....+ . ++.|+||.++++ +|
T Consensus 141 ~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~--~~~---~~~~~~~d-~-~~~s~sK~l~~~---~G 210 (347)
T 1jg8_A 141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG--VPV---KEYAGYAD-S-VMFCLSKGLCAP---VG 210 (347)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC--CCH---HHHHHTCS-E-EEEESSSTTCCS---SC
T ss_pred cccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC--CCh---HHhccccc-E-EEEecccccCCC---ce
Confidence 99999 99999999999999999999999999986421 1111 111 12222233 3 345899999853 78
Q ss_pred eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc--CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY--SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF 392 (467)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~ 392 (467)
|++ +.++++++. +........ ...+.+.+.++...|+.. .+.+.+ ..++++.+.
T Consensus 211 ~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~-~~~~~~~l~ 266 (347)
T 1jg8_A 211 SVV--VGDRDFIER------------ARKARKMLGGGMRQAGVLAAAGIIALTKM---------VDRLKE-DHENARFLA 266 (347)
T ss_dssp EEE--EECHHHHHH------------HHHHHHHHTCCCSSTHHHHHHHHHHHHHS---------STTHHH-HHHHHHHHH
T ss_pred EEE--EcCHHHHHH------------HHHHHHHcCCchhHHHHHHHHHHHHHHHH---------HHHHHH-HHHHHHHHH
Confidence 643 467877776 322222111 122334434433333210 111222 234667888
Q ss_pred HHhhhccCCCCCccc-ccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHH
Q 012238 393 DSLSAKDKSGKDWSF-ILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAII 460 (467)
Q Consensus 393 ~~l~~~~g~~~~~~~-~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~ 460 (467)
+.|+ ++|+ .+ ..+..+.|+|+.+ +. ++.+++. ++||.+.++| ||+++ ..+++++++++++|+
T Consensus 267 ~~L~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~ 340 (347)
T 1jg8_A 267 LKLK-EIGY----SVNPEDVKTNMVILRTDNLKVNAHGFIEALR-NSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 340 (347)
T ss_dssp HHHH-HHTC----BCCGGGCCSSEEEEECTTSSSCHHHHHHHHH-HHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHH-hcCc----eeccCCCcceEEEEEcccccCCHHHHHHHHH-HCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 8888 6653 32 2233444677643 23 4456665 4699998864 99884 457899999999999
Q ss_pred HHHHhcC
Q 012238 461 DSYHNVS 467 (467)
Q Consensus 461 ~~l~~~~ 467 (467)
+++++++
T Consensus 341 ~~l~~~~ 347 (347)
T 1jg8_A 341 KLFRKFS 347 (347)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9988764
No 92
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=1.3e-29 Score=251.65 Aligned_cols=325 Identities=12% Similarity=0.018 Sum_probs=222.5
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--------CCCcCCCCcchHHHHHH-HHHHHhCCCCcccccCce
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--------ENKEYLPIEGLAAFNKV-TAELLFGADNSVLKEQRV 152 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--------~~~~Y~~~~G~~~lr~a-ia~~l~~~~~~~~~~~~i 152 (467)
.++.++|..|.+ ..+ +++.+.+++.+.+... ....|.+..+..++|++ +++++.. + +|
T Consensus 6 ~~~~i~ld~~~~----~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~-------~-~v 72 (371)
T 2e7j_A 6 TKDFINIDPLQT----GGK-LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-------D-VA 72 (371)
T ss_dssp --CCEECCHHHH----TCC-CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS-------S-EE
T ss_pred CCCcEEeccccc----CCC-CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC-------C-EE
Confidence 346889988765 333 3788999988876432 12345577899999999 9999642 2 78
Q ss_pred eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEee--eecCCCCCCChhhHHHHHHcCC--C
Q 012238 153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYR--YYDPKTVGLDFEGMIADIKAAP--G 228 (467)
Q Consensus 153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~--~~~~~~~~~d~~~l~~~l~~~~--~ 228 (467)
++ |+|+++++.++ +...+.+||+|++++|+|..+...++..|++++.++ . +.++.+|++.+++.+++.. +
T Consensus 73 ~~--~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~ 146 (371)
T 2e7j_A 73 RV--TNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRG 146 (371)
T ss_dssp EE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTS
T ss_pred EE--eCChHHHHHHH--HHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccC
Confidence 88 99999999998 344467999999999999999999999999999998 6 3457899999999997421 3
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (467)
+++++++++|+||||.+++. ++|+++|++||+++|+||+|..+... .+ +..+ ...+++.|+||.++.
T Consensus 147 ~~~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~---~~---~~~~----~~di~~~s~sK~~~~ 213 (371)
T 2e7j_A 147 EVVLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMP---VS---LKEI----GADFIVGSGHKSMAA 213 (371)
T ss_dssp CEEEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBC---CC---HHHH----TCSEEEEEHHHHSSC
T ss_pred CeEEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCC---CC---hhhc----CCCEEEecCCcCCCC
Confidence 67889999999999999996 57777899999999999999876532 11 1111 234889999999885
Q ss_pred CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc-Cc------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238 309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR-PM------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMA 381 (467)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~ 381 (467)
+ .|+||++ .++++++. . +..... .. ...++...+.++..++. + .+. +..
T Consensus 214 ~-~~~G~~~---~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~----~~~--~~~ 269 (371)
T 2e7j_A 214 S-GPIGVMG---MKEEWAEI--------V---LRRSEKYKNKEVELLGCTARGATIITLMASFP---H----VRE--RIK 269 (371)
T ss_dssp C-SSCEEEE---ECTTTTTT--------T---TCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH---H----HHH--HGG
T ss_pred C-CCcEEEE---Eechhhhh--------h---ccccccCcccccccccCCcCHHHHHHHHHHHH---H----HHH--HHH
Confidence 4 5999996 44444321 0 111111 01 12233333333333331 1 111 456
Q ss_pred HHH--HHHHHHHHHHhhhccCCCCCcccccCC--cceEEecCC-CHHHHHHHHHcccEEEeC--------C---C--e-E
Q 012238 382 GRI--KNVRQKLFDSLSAKDKSGKDWSFILRQ--IGMFSFTGL-NKAQSDNMTNKWHVYMTK--------D---G--R-I 442 (467)
Q Consensus 382 ~~~--~~~r~~l~~~l~~~~g~~~~~~~~~~~--~g~f~~~~l-~~~~~~~ll~~~gI~v~~--------g---g--R-i 442 (467)
+++ +++++++.+.|+ +++ +++..+. .+.++|+.+ +.+.+.+.+.++||.+.+ | + | |
T Consensus 270 ~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii 344 (371)
T 2e7j_A 270 RWDEEVEKARRFAAEME-KLG----IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYF 344 (371)
T ss_dssp GHHHHHHHHHHHHHHHH-HTT----CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEE
T ss_pred HHHHHHHHHHHHHHHHH-HcC----cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEeccccccccCCCCCceEEE
Confidence 667 888899999998 765 4555553 244677765 333333334467998865 2 2 9 9
Q ss_pred Eecc--CChhhHHHHHHHHHHHHHhcC
Q 012238 443 SLAG--LSLAKCEYLADAIIDSYHNVS 467 (467)
Q Consensus 443 s~~~--~~~~~i~~~~~~l~~~l~~~~ 467 (467)
+++. .+++++++++++|++++++++
T Consensus 345 ~~~~~~~~~~~i~~~~~~l~~~~~~~~ 371 (371)
T 2e7j_A 345 KLSTYGLSDEEVDYVLNAFKEIIEKYS 371 (371)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeccCCCHHHHHHHHHHHHHHHHhcC
Confidence 9985 488999999999999998764
No 93
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.97 E-value=8.8e-30 Score=257.88 Aligned_cols=338 Identities=10% Similarity=0.034 Sum_probs=226.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
...|||+.|.+...-++ .++.+.+++.+.+..... ..|.+..+..++|+++++++.+. .+++|++ |+||
T Consensus 41 ~~~id~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~--~~g~ 111 (426)
T 1sff_A 41 REYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGD-----FAKKTLL--VTTG 111 (426)
T ss_dssp CEEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCS-----SCEEEEE--ESSH
T ss_pred CEEEEcccChhhcccCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcc-----cccEEEE--eCch
Confidence 46899998874211233 378889999888754211 24667889999999999997321 1478988 9999
Q ss_pred hhHHHHHHHHH-HHhCCCCEEEEcCCCCcchH-HHHhhCCCC-------------eEEeeeecC---CCCCCChhhHHHH
Q 012238 161 TGSLRLAAALI-ERYFPGAKVLISSPTWGNHK-NIFNDARVP-------------WSEYRYYDP---KTVGLDFEGMIAD 222 (467)
Q Consensus 161 t~al~l~~~~l-~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~-------------~~~v~~~~~---~~~~~d~~~l~~~ 222 (467)
++++.++..+. ....+| +|++++|+|..+. ..+...|.+ ++.+++..+ .++.+|++.+++.
T Consensus 112 ~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~ 190 (426)
T 1sff_A 112 SEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRI 190 (426)
T ss_dssp HHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHH
Confidence 99999984422 234455 8999999997654 456666653 566666321 1234789999999
Q ss_pred HHcC--CCCcEEEEe-CCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238 223 IKAA--PGGSFILLH-GCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (467)
Q Consensus 223 l~~~--~~~~~~i~i-~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (467)
+++. +.+++++++ ++++| || .+++.+++++|+++|++||++||+||+|.++.+.+. ...+ +.....+.
T Consensus 191 l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~~d 262 (426)
T 1sff_A 191 FKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVAPD 262 (426)
T ss_dssp HHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSCCS
T ss_pred HHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCCCC
Confidence 8731 134555555 56788 99 888999999999999999999999999998765321 1111 11111122
Q ss_pred EecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEME 378 (467)
Q Consensus 299 ~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~ 378 (467)
+.||||.+++ |+|+||++ .++++++. +.........+.+.+++.++..+|+.. .+ .
T Consensus 263 i~s~sK~~~~-GlriG~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~aal~~~------~~--~ 318 (426)
T 1sff_A 263 LTTFAKSIAG-GFPLAGVT---GRAEVMDA------------VAPGGLGGTYAGNPIACVAALEVLKVF------EQ--E 318 (426)
T ss_dssp EEEECGGGGT-SSCCEEEE---EEHHHHTT------------SCTTSBCCSSSSCHHHHHHHHHHHHHH------HH--T
T ss_pred EEEEcccccC-CCceEEEE---EcHHHHhh------------hccCCcCcCCCCCHHHHHHHHHHHHHH------Hh--c
Confidence 4499999996 99999996 66777776 443222334456777777777665321 11 1
Q ss_pred HHHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCCC-------------HHHHHHHHHcccEEEeCCC---
Q 012238 379 MMAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGLN-------------KAQSDNMTNKWHVYMTKDG--- 440 (467)
Q Consensus 379 ~~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l~-------------~~~~~~ll~~~gI~v~~gg--- 440 (467)
...++++++++.+.+.|+ +++ ++. +....+. |+|+|+.+. .++.+.+++ +||.+.+|+
T Consensus 319 ~~~~~~~~~~~~l~~~l~-~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~ 394 (426)
T 1sff_A 319 NLLQKANDLGQKLKDGLL-AIAEKHPE-IGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPYY 394 (426)
T ss_dssp THHHHHHHHHHHHHHHHH-HHHHTCTT-EEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTTS
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHhCCC-eEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCCC
Confidence 344556666667776666 532 221 2233455 567776541 234556655 699999873
Q ss_pred ---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 441 ---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 ---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++ ..+++++++++++|+++++++
T Consensus 395 ~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 395 NVLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 99886 458899999999999998764
No 94
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.97 E-value=4.3e-29 Score=248.38 Aligned_cols=327 Identities=12% Similarity=0.055 Sum_probs=223.4
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+...+||+.|.+.. ...+.++.+.+++.+.+... ....| +..+..++++++++++ + . ++++++ |+|
T Consensus 27 g~~~ld~~~~~~~~--~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~-g---~---~~~v~~--~~g 94 (375)
T 2eh6_A 27 GKEYLDFVSGIGVN--SLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF-W---T---EGKVFF--ANS 94 (375)
T ss_dssp CCEEEESSHHHHTC--TTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS-S---S---CEEEEE--ESS
T ss_pred CCEEEEcCCccccc--ccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc-C---C---CCeEEE--eCc
Confidence 34789999998721 23223788888888877432 12357 6678899999999995 2 2 368888 999
Q ss_pred chhHHHHHHHHHH-Hh---CCC-CEEEEcCCCCcchHHHHhhCCCCeE----EeeeecCC--CCCCChhhHHHHHHcCCC
Q 012238 160 GTGSLRLAAALIE-RY---FPG-AKVLISSPTWGNHKNIFNDARVPWS----EYRYYDPK--TVGLDFEGMIADIKAAPG 228 (467)
Q Consensus 160 gt~al~l~~~~l~-~~---~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~----~v~~~~~~--~~~~d~~~l~~~l~~~~~ 228 (467)
|++++.++...+. .. .|| |+|++++|+|..+...+...+...+ ..++.++. -..+|++.+++.++ +
T Consensus 95 ~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~ 171 (375)
T 2eh6_A 95 GTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLD---E 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTCC---T
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHhc---C
Confidence 9999999844321 23 678 9999999999887665544332211 00110000 00158899988876 5
Q ss_pred CcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 229 GSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
+++++++++++||||.+ .+.+++++|+++|++||+++|+||+|.++.... ....+..+ ....+++ ||||.++
T Consensus 172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~-~~~~d~~---s~SK~~~ 244 (375)
T 2eh6_A 172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG---EFYAYQHF-NLKPDVI---ALAKGLG 244 (375)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGGGGG-TCCCSEE---EECGGGG
T ss_pred CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC---cchhhhhc-CCCCCEE---EEccccc
Confidence 77889999999999999 568889999999999999999999999875432 11111111 1123433 7889999
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 387 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~ 387 (467)
+|+|+||++ .++++++. +.........+.+.+.+.++..+|+. +.+..++++++
T Consensus 245 -~g~~~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~ 298 (375)
T 2eh6_A 245 -GGVPIGAIL---AREEVAQS------------FTPGSHGSTFGGNPLACRAGTVVVDE----------VEKLLPHVREV 298 (375)
T ss_dssp -TTSCCEEEE---EEHHHHTT------------CCTTSCCCSSTTCHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred -CCCCeEEEE---EcHHHHhh------------hcCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 799999996 55667666 44321222335566777666555432 11567778888
Q ss_pred HHHHHHHhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHH
Q 012238 388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAI 459 (467)
Q Consensus 388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l 459 (467)
++++.+.|+ +++. ...++ .|+|+|+.+ ..++.+.+++ +||.+.+++ ||+++ ..+++++++++++|
T Consensus 299 ~~~l~~~L~-~~~~----~~~~~-~g~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 371 (375)
T 2eh6_A 299 GNYFKEKLK-ELGK----GKVKG-RGLMLGLELERECKDYVLKALE-KGLLINCTAGKVLRFLPPLIIQKEHIDRAISVL 371 (375)
T ss_dssp HHHHHHHHH-HTTS----SEEEE-ETTEEEEECSSCCHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhc----CCceE-EEEEEEEEEcCcHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 999999998 7652 23333 456777654 3456666665 699999763 88876 45889999999999
Q ss_pred HHHH
Q 012238 460 IDSY 463 (467)
Q Consensus 460 ~~~l 463 (467)
++++
T Consensus 372 ~~~l 375 (375)
T 2eh6_A 372 REIL 375 (375)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8763
No 95
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.97 E-value=1.5e-28 Score=242.62 Aligned_cols=331 Identities=11% Similarity=0.015 Sum_probs=227.1
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
|..|+|+.+.+ + ++++.+.+++.+.+. .|.+..|..++++++++++....| .++++|++ |+||++
T Consensus 13 p~~i~l~~~~~----~--~~~~~v~~a~~~~~~-----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~t~ 77 (359)
T 1svv_A 13 PKPYSFVNDYS----V--GMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGGTQ 77 (359)
T ss_dssp --CEECSCSCS----S--CCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCHHH
T ss_pred CeeEEecCCCc----C--CCCHHHHHHHHHHHh-----hccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCchH
Confidence 46899987554 3 347889999988764 244445555666666666544333 23678988 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHH--HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC----CCCcEEEEeC
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLHG 236 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~i~i~ 236 (467)
++.++ +.....+||+|++++|+|..+.. .++..|++++.++.+ ++.+|++.+++.+++. ..++++++++
T Consensus 78 a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~ 152 (359)
T 1svv_A 78 TNLIA--CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYIS 152 (359)
T ss_dssp HHHHH--HHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEE
T ss_pred HHHHH--HHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEE
Confidence 99998 44446699999999999998877 478899999999872 5789999999999852 1137888888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM 316 (467)
Q Consensus 237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~ 316 (467)
+| ||||.+++.+++++|+++|++||+++|+||+|.++..+....+...+ .+ .. ...+++.|.+|..++ ..+|++
T Consensus 153 ~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~-~~-~~d~~~~s~~K~g~~--~~~g~l 226 (359)
T 1svv_A 153 NT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLA-DI-AR-LTDMFYIGATKAGGM--FGEALI 226 (359)
T ss_dssp SS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHH-HH-HH-HCSEEEEECTTTTCS--SCEEEE
T ss_pred cC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhh-hh-hh-cCCEEEEecccCCCC--CceEEE
Confidence 88 89999999999999999999999999999998544322111111111 00 01 123678889997543 446888
Q ss_pred EEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238 317 NVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL 395 (467)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l 395 (467)
+ .++++++. +..... ....... +.+...+ +..++.+. .+++.+++++++++++.+.|
T Consensus 227 ~---~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L 284 (359)
T 1svv_A 227 I---LNDALKPN--------ARHLIK-QRGALMAKGWLLGIQ--FEVLMKDN--------LFFELGAHSNKMAAILKAGL 284 (359)
T ss_dssp E---CSGGGCTT--------HHHHHH-HTTCCCTTTHHHHHH--HHHHTSTT--------HHHHHHHHHHHHHHHHHHHH
T ss_pred E---EcccHHHH--------HHHHHh-cCCcccccchhhHHH--HHHHHhhh--------hHHHHHHHHHHHHHHHHHHh
Confidence 5 67777776 322111 1111111 2222222 23345442 13467788888999999988
Q ss_pred hhccCCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeC---CC----eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 396 SAKDKSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTK---DG----RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 396 ~~~~g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~---gg----Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ..| +++..+.+++|+|+.+..++.+++++++||.+.+ .+ ||+++. .+++++++++++|+++++++
T Consensus 285 ~-~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 285 E-ACG----IRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp H-HTT----CCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred c-cCC----eEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 6 655 5666677888999887777788887766998743 22 998753 37899999999999988764
No 96
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=3.4e-29 Score=250.12 Aligned_cols=321 Identities=13% Similarity=0.026 Sum_probs=224.5
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---CC---cCCC-CcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NK---EYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQ 156 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---~~---~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~ 156 (467)
+.++|..+.+ + + .++.+.+++.+.+.... .. .|.. ..+..++|+++++++.. ++++|++
T Consensus 16 ~~i~l~~~~~----~-~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~------~~~~v~~-- 81 (390)
T 1elu_A 16 NKTYFNFGGQ----G-I-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNV------DPNTITI-- 81 (390)
T ss_dssp TSEECCTTTC----C-C-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTS------CGGGEEE--
T ss_pred CeEEecCCcc----C-C-CCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCC------CHHHEEE--
Confidence 5788887754 3 2 36778888887764311 01 4533 37889999999999642 2678988
Q ss_pred cCCchhHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHH----HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238 157 GLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF 231 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 231 (467)
|+||++++.++ +... +.+||+|+++.|+|..+... ++..|++++.++.+.++++.+|++.+++.++ ++++
T Consensus 82 ~~g~t~a~~~~--~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~~ 156 (390)
T 1elu_A 82 TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---PKTR 156 (390)
T ss_dssp ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEE
T ss_pred eCChHHHHHHH--HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC---CCce
Confidence 99999999997 3333 46999999999999987654 4677999999988533567899999998886 5788
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 232 ILLHGCAHNPTGIDPTPEQWEKIADVIQ----EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~----~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
++++++|+||||.+++ +++|.++|+ ++|+++|+||+|...... .+ + .....++++.|+||.+.
T Consensus 157 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---~~---~----~~~~~d~~~~s~~K~~~ 223 (390)
T 1elu_A 157 LVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---LD---F----SRLEVDYYAFTGHKWFA 223 (390)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---CC---T----TTSCCSEEEEESSSTTC
T ss_pred EEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCcC---CC---h----hhcCCCEEEcccccccc
Confidence 9999999999999999 557777799 999999999998742211 11 0 11235688999999332
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc----------------------cCccCCCchHHHHHHHHHhC
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA----------------------RPMYSNPPVHGARIVANVVG 365 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~L~ 365 (467)
.|.++||++ .++++++. +.... ......++...+.++..++.
T Consensus 224 -~~~g~G~~~---~~~~~~~~------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 287 (390)
T 1elu_A 224 -GPAGVGGLY---IHGDCLGE------------INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ 287 (390)
T ss_dssp -CCTTCEEEE---ECTTTGGG------------CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH
T ss_pred -CCCceEEEE---ECHHhHhh------------cCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHH
Confidence 556799996 55666665 33211 11123445555554444442
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccc---cCCcceEEec---CCCHH-HHHHHHHcccEEEe
Q 012238 366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI---LRQIGMFSFT---GLNKA-QSDNMTNKWHVYMT 437 (467)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~---~~~~g~f~~~---~l~~~-~~~~ll~~~gI~v~ 437 (467)
. +.+ ..++++++++++++++++.+.|+ ++ | +++. .+.++++.|. +.+.+ +.+.+ .++||.+.
T Consensus 288 ~--l~~--~~~~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~ 357 (390)
T 1elu_A 288 L--HQR--QGTAEERYQAICQRSEFLWRGLN-QLPH----VHCLATSAPQAGLVSFTVDSPLGHRAIVQKL-EEQRIYLR 357 (390)
T ss_dssp H--HHH--HCCHHHHHHHHHHHHHHHHHHHH-HSTT----EEESCSSCCSSSEEEEEECSSSCHHHHHHHH-HHTTEECE
T ss_pred H--HHH--cCCHHHHHHHHHHHHHHHHHHHH-hcCC----cEEecCccccccEEEEEcCCCCCHHHHHHHH-HHCCEEEE
Confidence 1 100 11267788999999999999998 76 4 5555 3467776652 23444 45555 45699998
Q ss_pred CCC-----eEEec-cCChhhHHHHHHHHHHH
Q 012238 438 KDG-----RISLA-GLSLAKCEYLADAIIDS 462 (467)
Q Consensus 438 ~gg-----Ris~~-~~~~~~i~~~~~~l~~~ 462 (467)
+|+ ||+++ ..+++++++++++|+++
T Consensus 358 ~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 358 TIADPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp EETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred ecCCCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 863 99984 34889999999988753
No 97
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=8.3e-29 Score=247.75 Aligned_cols=311 Identities=10% Similarity=-0.041 Sum_probs=215.9
Q ss_pred CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE
Q 012238 100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK 179 (467)
Q Consensus 100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~ 179 (467)
.+.++.+.+++.+.+.. ...|....+..++|+++++++.. ++++|++ |+||++++.++ +...+.+||+
T Consensus 18 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--t~g~t~a~~~~--~~~~~~~gd~ 85 (392)
T 2z9v_A 18 VNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRL------SNKPVIL--HGEPVLGLEAA--AASLISPDDV 85 (392)
T ss_dssp CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTC------SSCCEEE--SSCTHHHHHHH--HHHHCCTTCC
T ss_pred cCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCC------CCCEEEE--eCCchHHHHHH--HHHhcCCCCE
Confidence 34478888888765532 12222345688999999999643 2678988 99999999998 3334679999
Q ss_pred EEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238 180 VLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 257 (467)
Q Consensus 180 Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~ 257 (467)
|+++.|+|+.+ ...++..|++++.++++ .++.+|++.+++.+++. ++++++++++|+||||.+++. ++|.++
T Consensus 86 Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~l---~~i~~l 159 (392)
T 2z9v_A 86 VLNLASGVYGKGFGYWAKRYSPHLLEIEVP--YNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINPI---DAIGAL 159 (392)
T ss_dssp EEEEESSHHHHHHHHHHHHHCSCEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECCH---HHHHHH
T ss_pred EEEecCCcccHHHHHHHHHcCCceEEeeCC--CCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceeccH---HHHHHH
Confidence 99999999765 34556689999999984 34579999999999642 356788899999999999985 577888
Q ss_pred HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccceEEEecCCHHHHhhhhhhhHHH
Q 012238 258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARCCEVAVIQ 336 (467)
Q Consensus 258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~ 336 (467)
|+++|+++|+|++|...... .+ + ......+++.|+||. ++++|+ ||++ .++++++.
T Consensus 160 ~~~~~~~li~D~a~~~g~~~---~~---~----~~~~~d~~~~s~sK~~~~~~g~--G~l~---~~~~~~~~-------- 216 (392)
T 2z9v_A 160 VSAHGAYLIVDAVSSFGGMK---TH---P----EDCKADIYVTGPNKCLGAPPGL--TMMG---VSERAWAK-------- 216 (392)
T ss_dssp HHHTTCEEEEECTTTBTTBS---CC---G----GGGTCSEEEECSSSTTCCCSCC--EEEE---ECHHHHHH--------
T ss_pred HHHcCCeEEEEcccccCCcc---cc---c----ccccceEEEecCcccccCCCce--eEEE---ECHHHHHH--------
Confidence 99999999999998632211 11 1 111245889999995 555664 9996 56777666
Q ss_pred HHHHHHhhc--------------------cCccCCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 012238 337 VKSQLKRLA--------------------RPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSL 395 (467)
Q Consensus 337 ~~~~l~~~~--------------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l 395 (467)
++... .....+++...+.++..++.. +.+. +++++++++++++++.+.|
T Consensus 217 ----l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 217 ----MKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL------YLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp ----HHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ----hhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH------HHhccHHHHHHHHHHHHHHHHHHH
Confidence 43210 111223444444444434321 2233 6678899999999999999
Q ss_pred hhccCCCCCccccc-CC---cceEEecC----CCHH-HHHHHHHcccEEEeCC------C--eEE-ec-cCChhhHHHHH
Q 012238 396 SAKDKSGKDWSFIL-RQ---IGMFSFTG----LNKA-QSDNMTNKWHVYMTKD------G--RIS-LA-GLSLAKCEYLA 456 (467)
Q Consensus 396 ~~~~g~~~~~~~~~-~~---~g~f~~~~----l~~~-~~~~ll~~~gI~v~~g------g--Ris-~~-~~~~~~i~~~~ 456 (467)
+ ++| +++.. +. .+.++|+. .+.+ +.++|.+++||.+.+| + ||+ ++ ..+++++++++
T Consensus 287 ~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~ 361 (392)
T 2z9v_A 287 T-AMG----LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAAL 361 (392)
T ss_dssp H-HTT----CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHH
T ss_pred H-HcC----CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHH
Confidence 8 765 45544 21 34444442 3444 4556665559999886 2 999 46 45889999999
Q ss_pred HHHHHHHHhc
Q 012238 457 DAIIDSYHNV 466 (467)
Q Consensus 457 ~~l~~~l~~~ 466 (467)
++|+++++++
T Consensus 362 ~~l~~~~~~~ 371 (392)
T 2z9v_A 362 TALGGAMNAA 371 (392)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999998764
No 98
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.96 E-value=1.9e-28 Score=246.12 Aligned_cols=323 Identities=11% Similarity=0.092 Sum_probs=228.0
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CCC---CcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GEN---KEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~~---~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
+...|||+.|.| -+.+ .++.+.+++.+.+.. +.. ..|. ...+..++|+++++++.. ++.|++
T Consensus 44 g~~~id~~~~~~---~g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-------~~~i~~- 111 (401)
T 1fc4_A 44 GSHVINFCANNY---LGLA-NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM-------EDAILY- 111 (401)
T ss_dssp SCEEEECCCSCT---TSCT-TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC-------SEEEEE-
T ss_pred CccEEEeeccCc---cccc-CCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC-------CcEEEe-
Confidence 457899999955 1221 367888888887643 211 1232 257789999999999732 245544
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC---CcEE
Q 012238 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFI 232 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~ 232 (467)
.+|++++.++ +...+.+||.|+++.|+|..+...++..|++++.++. .|++.+++.+++..+ ++++
T Consensus 112 --~sGs~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 112 --SSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp --SCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEE
T ss_pred --CChHHHHHHH--HHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceE
Confidence 5567788886 4445679999999999999888889999999888763 588999998874211 6789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCc-ccC
Q 012238 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATR-GMELLVAQSYSKNL-GLY 309 (467)
Q Consensus 233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~-~~~ 309 (467)
+++++||||||.+++ +++|.++|+++|+++|+||+|. ++.+... ... ....+. .+.++++.||||.+ +++
T Consensus 181 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~~---~~~~~~~~~~di~~~s~sK~~~~~~ 253 (401)
T 1fc4_A 181 IATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGS---HEYCDVMGRVDIITGTLGKALGGAS 253 (401)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCH---HHHTTCTTCCSEEEEESSSTTCSSS
T ss_pred EEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC-Ccc---HHHcCCCcCCcEEEecchhhccCCC
Confidence 999999999999999 6688888999999999999995 7753111 111 122221 13578999999999 655
Q ss_pred CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238 310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 387 (467)
Q Consensus 310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~ 387 (467)
| ||++ .++++++. +....... ..+++.+.+.++..+|+.. +..++.+++++++
T Consensus 254 g---G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~ 308 (401)
T 1fc4_A 254 G---GYTA---ARKEVVEW------------LRQRSRPYLFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWAN 308 (401)
T ss_dssp C---EEEE---ECHHHHHH------------HHHHCHHHHHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHH
T ss_pred C---EEEE---cCHHHHHH------------HHHhCcCceeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHH
Confidence 5 9985 57888776 44332111 3356777777776655321 1135678888999
Q ss_pred HHHHHHHhhhccCCCCCcccccCCcceEEecCCC----H-HHHHHHHHcccEEEeCC-------C----eEEecc-CChh
Q 012238 388 RQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN----K-AQSDNMTNKWHVYMTKD-------G----RISLAG-LSLA 450 (467)
Q Consensus 388 r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~----~-~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~ 450 (467)
++++.+.|+ ++| +++.+ ..+.|+|+.+. . ++.+.+.+ +||.+.++ + ||+++. .+++
T Consensus 309 ~~~l~~~L~-~~g----~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~ 381 (401)
T 1fc4_A 309 ARQFREQMS-AAG----FTLAG-ADHAIIPVMLGDAVVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPE 381 (401)
T ss_dssp HHHHHHHHH-HTT----CCBCC-SSSSEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHH
T ss_pred HHHHHHHHH-HcC----CcccC-CCCCEEEEEcCChHHHHHHHHHHHH-CCcEEeeecCCCCCCCCceEEEEeCCCCCHH
Confidence 999999999 776 45554 45566676542 2 34555555 59998865 1 899873 3789
Q ss_pred hHHHHHHHHHHHHHhc
Q 012238 451 KCEYLADAIIDSYHNV 466 (467)
Q Consensus 451 ~i~~~~~~l~~~l~~~ 466 (467)
++++++++|+++++++
T Consensus 382 ~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 382 QITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998865
No 99
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=1.4e-28 Score=246.21 Aligned_cols=321 Identities=11% Similarity=0.090 Sum_probs=223.8
Q ss_pred CCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccC-ceeeeec
Q 012238 81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQG 157 (467)
Q Consensus 81 ~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t 157 (467)
..+..+++..|.. + +++.+.+++.+.+.. .|. +..+..++|+++++++... ++ +|++ |
T Consensus 16 ~~~~~~~~~~g~~------~-~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g~~------~~~~i~~--~ 76 (393)
T 2huf_A 16 VTPNKLLMGPGPS------N-APQRVLDAMSRPILG----HLHPETLKIMDDIKEGVRYLFQTN------NIATFCL--S 76 (393)
T ss_dssp CCCCCEECSSSCC------C-CCHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--S
T ss_pred CCCCeEEecCCCC------C-CCHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--c
Confidence 3356788876632 2 377888887665432 232 3457899999999997532 43 7888 9
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
+||++++.++ +...+.+||+|+++.|+|..+ ...++..|++++.++++ .++.+|++.+++.+++ .+++++++
T Consensus 77 ~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~ 150 (393)
T 2huf_A 77 ASGHGGMEAT--LCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSK--VGQSLSLDEIRDALLI--HKPSVLFL 150 (393)
T ss_dssp SCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEE
T ss_pred CcHHHHHHHH--HHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCC--CCCCCCHHHHHHHHhc--cCCcEEEE
Confidence 9999999998 344467999999999999874 34556789999999984 3457999999999973 15678888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccc
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIG 314 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG 314 (467)
++|+||||.+++ +++|+++|+++|+++|+|+++. +.... .+ + .....++++.|+||. +|++|+ |
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~-~~~~~--~~---~----~~~~~d~~~~s~sK~l~g~~G~--G 215 (393)
T 2huf_A 151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS-LGGAP--MF---M----DRWEIDAMYTGSQKVLGAPPGI--T 215 (393)
T ss_dssp ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBC--CC---T----TTTTCSEEECCSSSTTCCCSSC--E
T ss_pred EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc-cCCCC--cc---h----hhcCccEEEECCCcccccCCCe--E
Confidence 999999999999 5688888999999999999964 22111 11 1 112356889999996 567887 9
Q ss_pred eEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cC--------------------ccCCCchHHHHHHHHHhCChhhHH
Q 012238 315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RP--------------------MYSNPPVHGARIVANVVGNPALFD 371 (467)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~--------------------~~~~~~~~~~~~~~~~L~~~~~~~ 371 (467)
|++ .++++++. +.... .+ ....++...+.++..+++. + .
T Consensus 216 ~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~-~ 277 (393)
T 2huf_A 216 PVS---FSHRAVER------------YKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM--A-C 277 (393)
T ss_dssp EEE---ECHHHHHH------------HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHH--H-H
T ss_pred EEE---ECHHHHHH------------HhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHH--H-H
Confidence 986 56777776 44320 01 1123445554444444421 1 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC---cceEEec----CCCH-HHHHHHHHcccEEEeCC----
Q 012238 372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IGMFSFT----GLNK-AQSDNMTNKWHVYMTKD---- 439 (467)
Q Consensus 372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~---~g~f~~~----~l~~-~~~~~ll~~~gI~v~~g---- 439 (467)
...+++.+++++++++++.+.|+ ++| +++..+. +++++++ +.+. ++.++|++++||.+.+|
T Consensus 278 --~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~ 350 (393)
T 2huf_A 278 --EEGLPALIARHEDCAKRLYRGLQ-DAG----FELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT 350 (393)
T ss_dssp --HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG
T ss_pred --HhCHHHHHHHHHHHHHHHHHHHH-HcC----CeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc
Confidence 11266788899999999999998 776 4555442 3434443 2344 44566666679999886
Q ss_pred --C--eEEe-cc-CChhhHHHHHHHHHHHHHhc
Q 012238 440 --G--RISL-AG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 --g--Ris~-~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||++ +. .+++++++++++|+++++++
T Consensus 351 ~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 351 AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 2 9999 52 26788999999999998764
No 100
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.1e-28 Score=244.62 Aligned_cols=315 Identities=11% Similarity=0.043 Sum_probs=213.0
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--------
Q 012238 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-------- 174 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-------- 174 (467)
++.+.+++.+.+.... ..|....+..++++.+++++....+. ++++|++ |+||++++.++...+...
T Consensus 43 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~i~~--~~ggt~a~~~~~~~~~~~~~~~~~~~ 117 (397)
T 3f9t_A 43 LPITRKIVDIFLETNL-GDPGLFKGTKLLEEKAVALLGSLLNN--KDAYGHI--VSGGTEANLMALRCIKNIWREKRRKG 117 (397)
T ss_dssp CTHHHHHHHHHTTCCT-TSGGGBHHHHHHHHHHHHHHHHHTTC--TTCEEEE--ESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCC--CCCCEEE--ecCcHHHHHHHHHHHHHHHHhhhhhc
Confidence 6788888888775432 22222224444444444443332222 2678888 999999999984333221
Q ss_pred ---CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHH
Q 012238 175 ---FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQW 251 (467)
Q Consensus 175 ---~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l 251 (467)
.+||+|+++.|+|..+...++..|++++.+|.+ .++.+|++.+++.+++ .+++++++++|+||||.+.+ +
T Consensus 118 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l 190 (397)
T 3f9t_A 118 LSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK--EDYTIDEKFVKDAVED--YDVDGIIGIAGTTELGTIDN---I 190 (397)
T ss_dssp CCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC--TTSSBCHHHHHHHHHH--SCCCEEEEEBSCTTTCCBCC---H
T ss_pred ccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC--CCCcCCHHHHHHHHhh--cCCeEEEEECCCCCCCCCCC---H
Confidence 149999999999999999999999999999984 3578999999999984 16678888999999999987 5
Q ss_pred HHHHHHHHhcCCeeEEeccCCCCCCCCCCC--------ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238 252 EKIADVIQEKNHIPFFDVAYQGFASGSLDN--------DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS 323 (467)
Q Consensus 252 ~~l~~~~~~~~~~li~Deay~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~ 323 (467)
++|.++|++||+++|+||+|.++..+.... .... + .. ...+++.|++|.++ +|.|+||++ +.++
T Consensus 191 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~---~-~~-~~~~~~~s~~K~~~-~~~~~g~~~--~~~~ 262 (397)
T 3f9t_A 191 EELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD---F-SL-GVDSITIDPHKMGH-CPIPSGGIL--FKDI 262 (397)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCS---G-GG-TCSEEECCTTTTTC-CCSSCEEEE--ESSG
T ss_pred HHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccc---c-cc-cCCeEEEccccccC-CCCCceEEE--EeCH
Confidence 578888999999999999998764321100 0000 1 12 34678899999876 778999986 5676
Q ss_pred HHHhhhhhhhHHHHHHHHHhhccCcc-----------CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 324 DLAARCCEVAVIQVKSQLKRLARPMY-----------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF 392 (467)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~ 392 (467)
.+.+. +........ .+.+..++.++...+. ...+++..++++++++++.
T Consensus 263 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~l~ 322 (397)
T 3f9t_A 263 GYKRY------------LDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG--------REGQRKIVNECMENTLYLY 322 (397)
T ss_dssp GGGGG------------TCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh------------hccCCccccCCCccccccccccchHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHH
Confidence 66554 322211111 1123344444443332 2335677788889999999
Q ss_pred HHhhhccCCCCCcccc-cCCcceEEecCC-CH-HHHHHHHHcccEEEeCCC-----eEEecc-CChhhHHHHHHHHHHHH
Q 012238 393 DSLSAKDKSGKDWSFI-LRQIGMFSFTGL-NK-AQSDNMTNKWHVYMTKDG-----RISLAG-LSLAKCEYLADAIIDSY 463 (467)
Q Consensus 393 ~~l~~~~g~~~~~~~~-~~~~g~f~~~~l-~~-~~~~~ll~~~gI~v~~gg-----Ris~~~-~~~~~i~~~~~~l~~~l 463 (467)
+.|+ ++|+ ... ++.++ ++|+.+ +. ++.+.+.+ +||.+.+++ ||+++. .+++++++++++|++++
T Consensus 323 ~~L~-~~g~----~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 323 KKLK-ENNF----KPVIEPILN-IVAIEDEDYKEVCKKLRD-RGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp HHHH-HTTC----CBSSCCSSS-EEEEECTTHHHHHHHHHH-TTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHH-HCCC----EEEcCCCcc-EEEEEeCCHHHHHHHHHh-CCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 9999 7763 433 34444 444433 33 44555555 599998874 999873 37899999999999987
Q ss_pred H
Q 012238 464 H 464 (467)
Q Consensus 464 ~ 464 (467)
+
T Consensus 396 ~ 396 (397)
T 3f9t_A 396 R 396 (397)
T ss_dssp -
T ss_pred C
Confidence 5
No 101
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=8.3e-29 Score=248.09 Aligned_cols=308 Identities=10% Similarity=0.073 Sum_probs=217.1
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCC--cchHHHHHHHHHHHhCCCCcccccC-ceeeeecCCchhHHHHHHHHHHHhCCCC
Q 012238 102 VLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGA 178 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~al~l~~~~l~~~~~gd 178 (467)
+++.+.+++.+.+. ..|.+. ....++|+++++++... ++ +|++ |+||++++.++ +...+.+||
T Consensus 29 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~------~~~~v~~--~~g~t~al~~~--~~~~~~~gd 94 (396)
T 2ch1_A 29 CSKRVLTAMTNTVL----SNFHAELFRTMDEVKDGLRYIFQTE------NRATMCV--SGSAHAGMEAM--LSNLLEEGD 94 (396)
T ss_dssp CCHHHHHHTTSCCC----CTTCHHHHHHHHHHHHHHHHHHTCC------CSCEEEE--SSCHHHHHHHH--HHHHCCTTC
T ss_pred CCHHHHHHhccccc----cCCChhHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCcHHHHHHHH--HHHhcCCCC
Confidence 36778877655432 235442 34889999999997543 55 7888 99999999998 444467999
Q ss_pred EEEEcCCCCcchH--HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238 179 KVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (467)
Q Consensus 179 ~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~ 256 (467)
+|++++|+|..|. ..++..|++++.++.+ .++.+|++.+++.+++ .+++++++++|+||||.+++ +++|++
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~---~~~i~~ 167 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADVRTIEGP--PDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLLQP---LEGVGQ 167 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHH
T ss_pred eEEEEcCCcccHHHHHHHHHcCCceEEecCC--CCCCCCHHHHHHHHHh--CCCCEEEEECCCCCCceecC---HHHHHH
Confidence 9999999999885 4778899999999984 3567999999999973 15678888999999999999 567888
Q ss_pred HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHH
Q 012238 257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQ 336 (467)
Q Consensus 257 ~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~ 336 (467)
+|+++|+++|+||+|. +.... .+ + ......+++.|++|.++ .+.++|+++ .++++++.
T Consensus 168 l~~~~~~~li~Dea~~-~g~~~--~~---~----~~~~~d~~~~s~~K~~~-~~~g~g~~~---~~~~~~~~-------- 225 (396)
T 2ch1_A 168 ICHQHDCLLIVDAVAS-LCGVP--FY---M----DKWEIDAVYTGAQKVLG-APPGITPIS---ISPKALDV-------- 225 (396)
T ss_dssp HHHHTTCEEEEECTTT-BTTBC--CC---T----TTTTCCEEECCCC-CCC-CCSSCEEEE---ECHHHHHH--------
T ss_pred HHHHcCCEEEEEcccc-ccCCc--cc---h----hhcCcCEEEEcCCcccc-CCCCeEEEE---ECHHHHHh--------
Confidence 8999999999999987 32111 11 1 11122466789999765 334568885 56666665
Q ss_pred HHHHHHhh-----------------------ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 337 VKSQLKRL-----------------------ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 393 (467)
Q Consensus 337 ~~~~l~~~-----------------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~ 393 (467)
+... ......+++...+.++..+|.. + ..+.+++++++++++++++.+
T Consensus 226 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~---~~~~~~~~~~~~~~~~~~l~~ 296 (396)
T 2ch1_A 226 ----IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ--I---AEEGLENQIKRRIECAQILYE 296 (396)
T ss_dssp ----HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHH--H---HHHCHHHHHHHHHHHHHHHHH
T ss_pred ----hhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHH--H---HHhhHHHHHHHHHHHHHHHHH
Confidence 2210 0112234566666666655532 1 123467888999999999999
Q ss_pred HhhhccCCCCCcccccCCcc----eEEec----CCCHH-HHHHHHHcccEEEeCC------C--eEEe-c-cCChhhHHH
Q 012238 394 SLSAKDKSGKDWSFILRQIG----MFSFT----GLNKA-QSDNMTNKWHVYMTKD------G--RISL-A-GLSLAKCEY 454 (467)
Q Consensus 394 ~l~~~~g~~~~~~~~~~~~g----~f~~~----~l~~~-~~~~ll~~~gI~v~~g------g--Ris~-~-~~~~~~i~~ 454 (467)
.|+ ++| +++..+.++ .++++ +.+.+ +.++|++++||.+.+| + ||++ + ..+++++++
T Consensus 297 ~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~ 371 (396)
T 2ch1_A 297 GLG-KMG----LDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQF 371 (396)
T ss_dssp HHH-HHT----CCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHH
T ss_pred HHH-HCC----CeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHH
Confidence 999 776 456666543 24443 23444 4566666679999885 2 9998 4 337889999
Q ss_pred HHHHHHHHHHhc
Q 012238 455 LADAIIDSYHNV 466 (467)
Q Consensus 455 ~~~~l~~~l~~~ 466 (467)
++++|+++++++
T Consensus 372 ~~~~l~~~l~~~ 383 (396)
T 2ch1_A 372 YLYGFKESLKAT 383 (396)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 102
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.96 E-value=4e-28 Score=243.77 Aligned_cols=327 Identities=15% Similarity=0.057 Sum_probs=224.0
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-----CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG 157 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t 157 (467)
+.++|..+.+ .+.++ +|.+.+++.+.+.. .. ...|....+..++|+++++++.. +++|++ +
T Consensus 47 ~~i~~~~~~~---~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~ 113 (401)
T 2bwn_A 47 DITVWCGNDY---LGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-------EAALVF--S 113 (401)
T ss_dssp EEEECSCSCT---TSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-------SEEEEE--S
T ss_pred cEEEeeCCCc---ccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEE--C
Confidence 5688886543 12333 55788888887743 11 12355667899999999999642 467777 6
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC-CCcEEEEeC
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHG 236 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~i~i~ 236 (467)
+|++ ++..+..++....+||+|+++.|+|..+...++..|++++.++.+ |++.+++.++... +++++++++
T Consensus 114 sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~ 185 (401)
T 2bwn_A 114 SAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFE 185 (401)
T ss_dssp CHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEE
T ss_pred CcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEe
Confidence 6665 655552222224589999999999999999999999999998761 7889998887543 467899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccce
Q 012238 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGA 315 (467)
Q Consensus 237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~ 315 (467)
+|+||||.+++ +++|+++|++||+++|+||+|....++.. .... . ..... ...+++++||||.++++| ||
T Consensus 186 ~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-g~~~-~-~~~~~~~~~~i~~~s~sK~~~~~G---G~ 256 (401)
T 2bwn_A 186 SVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPR-GAGV-A-ERDGLMHRIDIFNGTLAKAYGVFG---GY 256 (401)
T ss_dssp SBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTT-SCCH-H-HHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred cCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCC-Ccee-e-eccCccccCcEEEeechhhccCCC---CE
Confidence 99999999998 56788889999999999999985444311 1111 1 11111 124688999999999888 99
Q ss_pred EEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 316 MNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 393 (467)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~ 393 (467)
++ .++++++. +...... ...+.+.+.+.++..+++.. + ...+++.+++++++++++.+
T Consensus 257 ~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~--~~~~~~~~~~~~~~~~~l~~ 316 (401)
T 2bwn_A 257 IA---ASARMVDA------------VRSYAPGFIFSTSLPPAIAAGAQASIAFL---K--TAEGQKLRDAQQMHAKVLKM 316 (401)
T ss_dssp EE---ECHHHHHH------------HHHHCHHHHTSBCCCHHHHHHHHHHHHHH---T--SHHHHHHHHHHHHHHHHHHH
T ss_pred Ee---cCHHHHHH------------HHHhCcCceecCCCCHHHHHHHHHHHHHH---H--hcccHHHHHHHHHHHHHHHH
Confidence 85 67777776 3322111 12233445555555544211 0 01246778889999999999
Q ss_pred HhhhccCCCCCcccccCCcceEEecCCC-----HHHHHHHHHcccEEEeCC-------C----eEEecc-CChhhHHHHH
Q 012238 394 SLSAKDKSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD-------G----RISLAG-LSLAKCEYLA 456 (467)
Q Consensus 394 ~l~~~~g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g-------g----Ris~~~-~~~~~i~~~~ 456 (467)
.|+ ++| +++..+.++ ++|+.+. .++.+.+++++||.+.++ | ||+++. .+++++++++
T Consensus 317 ~L~-~~g----~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~ 390 (401)
T 2bwn_A 317 RLK-ALG----MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLV 390 (401)
T ss_dssp HHH-HHT----CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHH
T ss_pred HHH-HCC----CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHH
Confidence 998 776 466666666 5565442 234556655679998653 2 888873 3789999999
Q ss_pred HHHHHHHHhc
Q 012238 457 DAIIDSYHNV 466 (467)
Q Consensus 457 ~~l~~~l~~~ 466 (467)
++|+++++++
T Consensus 391 ~~l~~~~~~~ 400 (401)
T 2bwn_A 391 HAMDLLWARC 400 (401)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 103
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=3.8e-28 Score=241.87 Aligned_cols=319 Identities=13% Similarity=0.042 Sum_probs=217.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcC---CCCcCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHH
Q 012238 94 RTEELQPYVLDVVKKAENLMLERG---ENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL 166 (467)
Q Consensus 94 ~d~~~~p~~~~~v~~a~~~~~~~~---~~~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l 166 (467)
+|.++..++++.+++++.+.+... ....|.. ..+..++|+++++++... ++++++ |+||++++.+
T Consensus 4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~------~~~v~~--~~g~t~a~~~ 75 (382)
T 4eb5_A 4 FDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG------GGTVVF--TSGATEANNL 75 (382)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT------TEEEEE--ESSHHHHHHH
T ss_pred eccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--cCchHHHHHH
Confidence 444444556899999998887531 1112432 246789999999997532 578888 9999999999
Q ss_pred HHHHHHHh----CCCCEEEEcCCCCcchHHHHh---hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 167 AAALIERY----FPGAKVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 167 ~~~~l~~~----~~gd~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
+.. ... .+||+|++++|+|+.+...++ ..|++++.++++ .++.+|++.+++.++ ++++++++++|+
T Consensus 76 ~~~--~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~ 148 (382)
T 4eb5_A 76 AII--GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR---DDTILVSVQHAN 148 (382)
T ss_dssp HHH--HHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEECCSBC
T ss_pred HHH--HHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC--CCCccCHHHHHHHhc---CCCeEEEEeccC
Confidence 843 334 689999999999998876664 479999999984 356799999999987 467899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
||||.+++. ++|+++|+++|++ |+|++|.. .. ...+ +..+ ..++++.|+||.+|++| +||++
T Consensus 149 nptG~~~~l---~~i~~l~~~~~~~-i~D~a~~~-g~--~~~~---~~~~----~~di~~~s~sK~~g~~g--~G~~~-- 210 (382)
T 4eb5_A 149 NEIGTIQPV---EEISEVLAGKAAL-HIDATASV-GQ--IEVD---VEKI----GADMLTISSNDIYGPKG--VGALW-- 210 (382)
T ss_dssp TTTCBBCCH---HHHHHHHTTSSEE-EEECTTTB-TT--BCCC---HHHH----TCSEEEEETGGGTCCSS--CEEEE--
T ss_pred CCccccCCH---HHHHHHHHHCCCE-EEEcchhc-CC--cccC---cccc----CCCEEEeehHHhcCCCc--eEEEE--
Confidence 999999985 5788889999999 99999872 21 1111 2111 34688999999988767 68886
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHh---hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKR---LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 396 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~ 396 (467)
+.++..+.. . +.. ........++...+.++..++.. +.+.+++++++++++++++.+.|+
T Consensus 211 ~~~~~~l~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~------~~~~~~~~~~~~~~~~~~l~~~L~ 273 (382)
T 4eb5_A 211 IRKEAKLQP--------V---ILGGGQENGLRSGSENVPSIVGFGKAAEI------TAMEWREEAERLRRLRDRIIDNVL 273 (382)
T ss_dssp EETTCCCCC--------S---SCSSCTGGGTSCSCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EccccccCc--------e---ecCCCccccccCCCccHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHh
Confidence 333311111 0 100 01111233444444444444421 123467888999999999999998
Q ss_pred hccCCCCCcccccCC----cceEEe--cCCCHHHHHHHHHcccEEEeCC-------------------------C--eEE
Q 012238 397 AKDKSGKDWSFILRQ----IGMFSF--TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RIS 443 (467)
Q Consensus 397 ~~~g~~~~~~~~~~~----~g~f~~--~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris 443 (467)
++. + +++..+. ++++.+ .+.+.+.+.+.+.++||.+.+| + ||+
T Consensus 274 -~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 349 (382)
T 4eb5_A 274 -KIE--E-SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp -TST--T-EEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE
T ss_pred -hCC--C-eEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE
Confidence 752 1 4555543 334322 2345544443444579998874 3 999
Q ss_pred ecc-CChhhHHHHHHHHHHHHHhc
Q 012238 444 LAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 444 ~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
++. .+++++++++++|+++++++
T Consensus 350 ~~~~~~~~~i~~~~~~l~~~~~~~ 373 (382)
T 4eb5_A 350 LGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 884 37899999999999988754
No 104
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.96 E-value=4.7e-28 Score=245.54 Aligned_cols=325 Identities=12% Similarity=0.044 Sum_probs=228.0
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc-CC-CCcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~-~~-~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
+.+.|||+.|.|. +.+ .++.+.+++.+.+.. +. ...|. +.....++++.+++++. . + +.++
T Consensus 63 g~~~id~~~~~~l---g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g-~------~-~~i~- 129 (427)
T 2w8t_A 63 GKDTILLGTYNYM---GMT-FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG-T------T-GAIV- 129 (427)
T ss_dssp TEEEEECSCCCTT---CGG-GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT-C------S-EEEE-
T ss_pred CceEEEEECcccc---cCC-CCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC-C------C-ceEE-
Confidence 3578999999751 322 267788888887643 21 12222 23456899999999973 2 2 3444
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC-CcEEEE
Q 012238 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILL 234 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~i~ 234 (467)
+.+|++++..+ +...+.+||.|+++.|+|..+...++..|++++.++. +|++.+++.+++..+ ++++|+
T Consensus 130 -~~sGs~a~~~a--l~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 130 -FSTGYMANLGI--ISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp -ESCHHHHHHHH--HHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred -ecCcHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEE
Confidence 57777888876 3344679999999999999999999999998887763 689999999985332 678999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCcc
Q 012238 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERI 313 (467)
Q Consensus 235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~Ri 313 (467)
+++++||||.+++ +++|+++|++||+++|+||+|..+.++.. .. ........ .+.++++.||||.+|++|
T Consensus 200 ~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~--g~-~~~~~~~~~~~~di~~~s~sK~~g~~g--- 270 (427)
T 2w8t_A 200 LEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN--GR-GVYEAQGLEGQIDFVVGTFSKSVGTVG--- 270 (427)
T ss_dssp EESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT--SC-CHHHHTTCTTCCSEEEEESSSTTCSCC---
T ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC--CC-chHhhcCCCcCCcEEEecchhhhccCC---
Confidence 9999999999998 56888889999999999999998876521 11 12222221 235899999999999777
Q ss_pred ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 012238 314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKL 391 (467)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l 391 (467)
||++ +++++++. +...... ...+.+...+.++..+|+.. +++++.+++++++++++
T Consensus 271 G~v~---~~~~l~~~------------l~~~~~~~~~~~~~~~~~~aa~~~al~~~-------~~~~~~~~~~~~~~~~l 328 (427)
T 2w8t_A 271 GFVV---SNHPKFEA------------VRLACRPYIFTASLPPSVVATATTSIRKL-------MTAHEKRERLWSNARAL 328 (427)
T ss_dssp EEEE---ECCTTGGG------------GGGTCHHHHSSCCCCHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHH
T ss_pred CEEE---eCHHHHHH------------HHHhcccccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHH
Confidence 9985 56777776 4333111 12234444444444444321 11357788899999999
Q ss_pred HHHhhhccCCCCCcccc-cCCcceEEecCCC-----HHHHHHHHHcccEEEeCC---------C--eEEecc-CChhhHH
Q 012238 392 FDSLSAKDKSGKDWSFI-LRQIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD---------G--RISLAG-LSLAKCE 453 (467)
Q Consensus 392 ~~~l~~~~g~~~~~~~~-~~~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g---------g--Ris~~~-~~~~~i~ 453 (467)
.+.|+ ++| +.+. ++..+.++|+.+. .++.+.|+++ ||.+.++ + ||+++. .++++++
T Consensus 329 ~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~ 402 (427)
T 2w8t_A 329 HGGLK-AMG----FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQ 402 (427)
T ss_dssp HHHHH-HHT----CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHH
T ss_pred HHHHH-HcC----CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHH
Confidence 99999 776 4555 4413446665432 2345666665 9999875 1 888875 3789999
Q ss_pred HHHHHHHHHHHhc
Q 012238 454 YLADAIIDSYHNV 466 (467)
Q Consensus 454 ~~~~~l~~~l~~~ 466 (467)
+++++|+++++++
T Consensus 403 ~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 403 TVLGMFQAAGRAV 415 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 105
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.96 E-value=1.1e-28 Score=248.09 Aligned_cols=328 Identities=13% Similarity=0.062 Sum_probs=221.9
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
+...+||+.|.+.+.-+. .+|.+.+++.+.+..... ..+.+.....++++.+++++ + .+++++ |+||
T Consensus 38 g~~~lD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~-------~~~v~~--~~gg 105 (406)
T 4adb_A 38 GKEYIDFAGGIAVNALGH--AHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-F-------ADRVFF--CNSG 105 (406)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-S-------CSEEEE--ESSH
T ss_pred CCEEEECCCchhhcccCC--CCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-C-------CCeEEE--eCcH
Confidence 357899999854222333 368899999888754211 12224556788888888884 2 348888 9999
Q ss_pred hhHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeecCCCCCCChhhHHH
Q 012238 161 TGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 161 t~al~l~~~~l~~~-----~~g-d~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
++|+.++...+... .+| |+|++++|+|..+...+...+. .+..+|. .|++.+++
T Consensus 106 ~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~ 178 (406)
T 4adb_A 106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASA 178 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHH
Confidence 99999984332111 055 9999999999988555444343 2222222 47888888
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238 222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (467)
Q Consensus 222 ~l~~~~~~~~~i~i~~p~NPTG~~~--~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (467)
.++ +++++++++ |+||||.++ +.+++++|+++|++||+++|+||+|.++.+.+. .... .......+++
T Consensus 179 ~l~---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~-~~~~~~~d~~-- 248 (406)
T 4adb_A 179 LID---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE---LYAY-MHYGVTPDLL-- 248 (406)
T ss_dssp TCS---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHH-HHHTCCCSEE--
T ss_pred Hhc---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hHHH-HhcCCCCCEE--
Confidence 886 578888877 999999998 999999999999999999999999998865431 1122 1223334444
Q ss_pred ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM 379 (467)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~ 379 (467)
+|||.++ +|+|+||++ .++++++. +.........+.+.+.+.++..+|+... .++
T Consensus 249 -t~sK~~~-~G~r~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~ 303 (406)
T 4adb_A 249 -TTAKALG-GGFPVGALL---ATEECARV------------MTVGTHGTTYGGNPLASAVAGKVLELIN--------TPE 303 (406)
T ss_dssp -EECGGGG-TTSCCEEEE---ECHHHHHT------------CCTTSSCCSSTTCHHHHHHHHHHHHHHS--------SHH
T ss_pred -Eechhhc-CCCCeEEEE---EcHHHHhh------------hccCCcCCCCCCCHHHHHHHHHHHHHHH--------hcC
Confidence 6799999 999999985 77887776 5554444455677788877776654211 135
Q ss_pred HHHHHHHHHHHHHHHhhhccCCC-CCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCCC----eEEec-c
Q 012238 380 MAGRIKNVRQKLFDSLSAKDKSG-KDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA-G 446 (467)
Q Consensus 380 ~~~~~~~~r~~l~~~l~~~~g~~-~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~-~ 446 (467)
..++++++++++.+.|+ +++.. ..+.... ..|.++|+.+ +. ++.+.+++ +||.+.++| ||+++ .
T Consensus 304 ~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~iRi~~~~~ 380 (406)
T 4adb_A 304 MLNGVKQRHDWFVERLN-TINHRYGLFSEVR-GLGLLIGCVLNADYAGQAKQISQEAAK-AGVMVLIAGGNVVRFAPALN 380 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHCCEEEEE-EETTEEEEEECTTTTTCHHHHHHHHHH-TTEECEESSTTEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhCCCceEEE-EEEEEEEEEEeCCcHHHHHHHHHHHHH-CCcEEeecCCCeEEEECCCC
Confidence 66677777788877777 54210 0011122 2344555422 23 44556665 599999885 88533 2
Q ss_pred CChhhHHHHHHHHHHHHHhc
Q 012238 447 LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 447 ~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+++++++++++|+++++++
T Consensus 381 ~~~e~i~~~~~~l~~~l~~~ 400 (406)
T 4adb_A 381 VSEEEVTTGLDRFAAACEHF 400 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 38899999999999998754
No 106
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=3.9e-28 Score=245.46 Aligned_cols=324 Identities=14% Similarity=0.079 Sum_probs=223.2
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHh--cCCC--------CcCCCCcchHHHHHHHHHHHhCCCCcccccCc
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--RGEN--------KEYLPIEGLAAFNKVTAELLFGADNSVLKEQR 151 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~--~~~~--------~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~ 151 (467)
+++.|.|..+.+ + ++++.+.+++.+.+. .... ..|....+..++++.+++++... +++
T Consensus 20 ~~~~iyld~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~------~~~ 87 (423)
T 3lvm_A 20 MKLPIYLDYSAT----T--PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD------PRE 87 (423)
T ss_dssp CCSSEECBTTTC----C--CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC------GGG
T ss_pred cCCCEeecCCCc----C--CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC------CCe
Confidence 357788876654 3 347889998887765 2110 00111235688999999997542 679
Q ss_pred eeeeecCCchhHHHHHHHHHHH-h-CCCCEEEEcCCCCcchHHHH---hhCCCCeEEeeeecCCCCCCChhhHHHHHHcC
Q 012238 152 VATVQGLSGTGSLRLAAALIER-Y-FPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAA 226 (467)
Q Consensus 152 i~~~~t~ggt~al~l~~~~l~~-~-~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 226 (467)
|++ |+||++|+.++...+.. + .+||+|+++.|+|+.+...+ +..|++++.++.+ .++.+|++.+++.++
T Consensus 88 v~~--~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~-- 161 (423)
T 3lvm_A 88 IVF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAAMR-- 161 (423)
T ss_dssp EEE--ESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHCC--
T ss_pred EEE--eCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccC--CCCccCHHHHHHhcC--
Confidence 999 99999999998433221 1 27999999999999987776 4559999999884 367789999999997
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306 (467)
Q Consensus 227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 306 (467)
++++++++++|+||||.+++ +++|+++|+++|++||+||+|...... .+. ......+++.|+||.+
T Consensus 162 -~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~~~-------~~~~~di~~~s~sK~~ 227 (423)
T 3lvm_A 162 -DDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP---IDL-------SQLKVDLMSFSGHKIY 227 (423)
T ss_dssp -TTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC---CCT-------TTSCCSEEEEESTTTT
T ss_pred -CCcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC---cCh-------hhcCCCEEEechHHhc
Confidence 57889999999999999999 556888899999999999997643221 111 1113468899999999
Q ss_pred ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc-------CccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238 307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR-------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEM 379 (467)
Q Consensus 307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~ 379 (467)
|++| +||++ .+++.++. +..... .....++...+.++..++. . +.+.+++
T Consensus 228 g~~g--~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~---~~~~~~~ 284 (423)
T 3lvm_A 228 GPKG--IGALY---VRRKPRVR------------IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR---I---AKEEMAT 284 (423)
T ss_dssp SCSS--CEEEE---ECBTTBCC------------CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH---H---HHHHHHH
T ss_pred CCCC--eEEEE---EeccccCC------------CCccccCCcccccccCCCCCHHHHHHHHHHHH---H---HHHHHHH
Confidence 8777 89986 44444444 332211 1122344444444444432 1 1233678
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCcccccCCc----ceE-Eec-CCCHHHHHHHHHcccEEEeCC--------------
Q 012238 380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI----GMF-SFT-GLNKAQSDNMTNKWHVYMTKD-------------- 439 (467)
Q Consensus 380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~----g~f-~~~-~l~~~~~~~ll~~~gI~v~~g-------------- 439 (467)
.+++++++++++.+.|+ ++. ++.+..+.+ +++ +++ +.+.+.+.+.+.+ |.+.+|
T Consensus 285 ~~~~~~~~~~~l~~~L~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~ 358 (423)
T 3lvm_A 285 EMERLRGLRNRLWNGIK-DIE---EVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVL 358 (423)
T ss_dssp HHHHHHHHHHHHHHHHT-TST---TEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCC---CEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHH
Confidence 89999999999999998 762 145554443 332 222 4566555555554 777764
Q ss_pred -----------C--eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 440 -----------G--RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 -----------g--Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||+++. .+++++++++++|+++++++
T Consensus 359 ~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 359 RALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp HHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3 999874 36799999999999998754
No 107
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=9.8e-28 Score=240.20 Aligned_cols=327 Identities=12% Similarity=0.069 Sum_probs=225.1
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
+.+.+||+.+.+...-+. .+|.+.+++.+.+..... ..+.+..-..++++.+++++. ++++++ ++||
T Consensus 35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~v~~--~~~g 102 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGH--RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--------KEMVLP--MNTG 102 (392)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--------CSEEEE--ESSH
T ss_pred CCEEEEcCCChhhhccCC--CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--------CCEEEE--eCcH
Confidence 347899998865222122 368899999888754211 111244557788899998853 468888 9999
Q ss_pred hhHHHHHHHHHHHh--------CCCCEEEEcCCCCcchHHHHhhCCCC-------------eEEeeeecCCCCCCChhhH
Q 012238 161 TGSLRLAAALIERY--------FPGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGLDFEGM 219 (467)
Q Consensus 161 t~al~l~~~~l~~~--------~~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~~l 219 (467)
++|+.++..++... ..+|+|+++.|+|..+...+...+.. +..++. .|++.+
T Consensus 103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 175 (392)
T 3ruy_A 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEAL 175 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHH
Confidence 99999984433222 23679999999997665544333222 222222 389999
Q ss_pred HHHHHcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEE
Q 012238 220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298 (467)
Q Consensus 220 ~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~-l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (467)
++.++ ++++++++++|+||||.+++.++ +++|+++|++||+++|+||+|.++...+. .... .......+++
T Consensus 176 ~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~-~~~~~~~d~~- 247 (392)
T 3ruy_A 176 KAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFAC-DWDNVTPDMY- 247 (392)
T ss_dssp HHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCSEE-
T ss_pred HHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc---chhh-hccCCCCCEE-
Confidence 99987 67889999999999999997655 99999999999999999999988765421 1111 1112223433
Q ss_pred EecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 299 ~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
+|||.++ +| +|+||++ .++++++. +.........+.+.+.+.++..+|+.. ..
T Consensus 248 --~~SK~l~-gG~~~~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~-- 301 (392)
T 3ruy_A 248 --ILGKALG-GGVFPISCAA---ANRDILGV------------FEPGSHGSTFGGNPLACAVSIAALEVL------EE-- 301 (392)
T ss_dssp --EECGGGG-TTTSCCEEEE---ECHHHHTT------------CCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--
T ss_pred --EEchhhh-CChhhhEEEE---ECHHHHhh------------hccCCcCCCCCCCHHHHHHHHHHHHHH------Hh--
Confidence 6789876 46 9999995 67777776 555444445567777877777666421 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec--CCCHHHHHHHHHcccEEEeCCC----eEEecc-CChh
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GLNKAQSDNMTNKWHVYMTKDG----RISLAG-LSLA 450 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~gg----Ris~~~-~~~~ 450 (467)
++.+++++++++++.+.|+ +++.+. +....+.++++.|. +...++.+.++ ++||.+.+++ ||+++. .+++
T Consensus 302 ~~~~~~~~~~~~~l~~~L~-~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~iRi~~~~~~~~~ 378 (392)
T 3ruy_A 302 EKLTERSLQLGEKLVGQLK-EIDNPM-ITEVRGKGLFIGIELNEPARPYCEQLK-AAGLLCKETHENVIRIAPPLVISEE 378 (392)
T ss_dssp TTHHHHHHHHHHHHHHHHT-TCCCTT-EEEEEEETTEEEEEESSCSHHHHHHHH-TTTEECCCBTTTEEEECCCTTCCHH
T ss_pred hhHHHHHHHHHHHHHHHHH-HhcCCC-ceEEEeeeeEEEEEEcchHHHHHHHHH-HCCcEEecCCCCEEEEECCCCCCHH
Confidence 4677888999999999998 775322 34455666666554 22345566665 5799999985 887432 3789
Q ss_pred hHHHHHHHHHHHHH
Q 012238 451 KCEYLADAIIDSYH 464 (467)
Q Consensus 451 ~i~~~~~~l~~~l~ 464 (467)
++++++++|+++++
T Consensus 379 ~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 379 DLEWAFQKIKAVLS 392 (392)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998863
No 108
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.96 E-value=1.3e-27 Score=240.88 Aligned_cols=320 Identities=12% Similarity=0.007 Sum_probs=221.2
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC--CCCcC----CCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~--~~~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
+.+.|||+...|. +.+. +|.+.+++.+.+... ....| .......++++++++++... ..++
T Consensus 58 g~~~ld~~s~~~l---~~~~-~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~--------~~i~- 124 (409)
T 3kki_A 58 SPDDIILQSNDYL---ALAN-HPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFD--------ECLL- 124 (409)
T ss_dssp CTTSEECCCSCTT---CCTT-CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCS--------EEEE-
T ss_pred CCceEEeeccCcc---CCcC-CHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCC--------eEEE-
Confidence 4578999877652 3333 678888888877541 11122 22344678999999996432 2334
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
+.+|++++..+ +...+.+||.|+++.|+|..+...++..|++++.++. .|++.+++.+++ .+++++++
T Consensus 125 -~~sGt~a~~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~--~~~~~vi~ 192 (409)
T 3kki_A 125 -SQSGWNANVGL--LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQR--HGPGIIVV 192 (409)
T ss_dssp -ESCHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHH--HCSCEEEE
T ss_pred -ecchHHHHHHH--HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHh--cCCeEEEE
Confidence 46668888876 4455779999999999999999999999999887754 689999999985 24578889
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccc
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG 314 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG 314 (467)
++|+||||.+++ +++|+++|++||++||+||+|.+..++.. ..... ..... .+.++++.|+||.++++| |
T Consensus 193 ~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g~~~~-~~~~~~~~~di~~~s~sK~~~~~g---g 263 (409)
T 3kki_A 193 DSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--GAGLL-AELGLTREVHFMTASLAKTFAYRA---G 263 (409)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHH-HHHTCGGGCSEEEEESSSTTCSSC---E
T ss_pred CCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCcch-hhcCCCCCCCEEEeecchhhCCCc---e
Confidence 999999999999 66888889999999999999988555421 11111 22121 134588999999999664 8
Q ss_pred eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF 392 (467)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~ 392 (467)
|++ .++++++. +....... ....+...+.++...++ . .++.++.+++++++++++.
T Consensus 264 ~v~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~aa~~aal~---~----~~~~~~~~~~~~~~~~~l~ 321 (409)
T 3kki_A 264 AIW---CNNEVNRC------------VPFISYPAIFSSTLLPYEAAGLETTLE---I----IESADNRRQHLDRMARKLR 321 (409)
T ss_dssp EEE---ESSSGGGT------------HHHHCHHHHHSBCCCHHHHHHHHHHHH---H----HHHCHHHHHHHHHHHHHHH
T ss_pred EEE---ECHHHHHH------------HHHhCcCccccCCCcHHHHHHHHHHHH---H----HhcCHHHHHHHHHHHHHHH
Confidence 885 67777776 33322111 22344444444444432 1 1122578888999999999
Q ss_pred HHhhhccCCCCCcccccCCcceEEecCC-----CHHHHHHHHHcccEEEeC-------CC----eEEecc-CChhhHHHH
Q 012238 393 DSLSAKDKSGKDWSFILRQIGMFSFTGL-----NKAQSDNMTNKWHVYMTK-------DG----RISLAG-LSLAKCEYL 455 (467)
Q Consensus 393 ~~l~~~~g~~~~~~~~~~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~-------gg----Ris~~~-~~~~~i~~~ 455 (467)
+.|+ ++| +.+. + .+.++|+.+ ..++.+.++++ ||.+.+ .| ||+++. .++++++++
T Consensus 322 ~~L~-~~g----~~~~-~-~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~ 393 (409)
T 3kki_A 322 IGLS-QLG----LTIR-S-ESQIIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKI 393 (409)
T ss_dssp HHHH-TTT----CCCC-C-SSSEEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHH
T ss_pred HHHH-HcC----CccC-C-CCCEEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHH
Confidence 9999 876 4444 3 455666543 12346666665 999853 22 899863 378999999
Q ss_pred HHHHHHHHHh
Q 012238 456 ADAIIDSYHN 465 (467)
Q Consensus 456 ~~~l~~~l~~ 465 (467)
+++|+++++.
T Consensus 394 ~~~l~~~l~~ 403 (409)
T 3kki_A 394 IEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 109
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=2.3e-28 Score=240.62 Aligned_cols=315 Identities=13% Similarity=0.020 Sum_probs=211.8
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEE
Q 012238 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vl 181 (467)
+++.+++++.+.+.. ...|....+..++|+++++++... ++++++ |+||++++.++ +...+.+||+|+
T Consensus 12 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~------~~~i~~--~~g~t~a~~~~--~~~~~~~gd~vl 79 (352)
T 1iug_A 12 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFRTE------GEVLIL--TGSGTLAMEAL--VKNLFAPGERVL 79 (352)
T ss_dssp CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHTCS------SEEEEE--ESCHHHHHHHH--HHHHCCTTCEEE
T ss_pred CCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhCCC------CceEEE--cCchHHHHHHH--HHhccCCCCeEE
Confidence 378899888776532 122222356789999999997532 578888 99999999998 444467999999
Q ss_pred EcCCCCcchH--HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238 182 ISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ 259 (467)
Q Consensus 182 v~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~ 259 (467)
++.|+|+.+. ..++..|++++.++++ .++.+|++.+++ ++++++++++|+||||.+++. ++|.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~~l---~~i~~l~~ 148 (352)
T 1iug_A 80 VPVYGKFSERFYEIALEAGLVVERLDYP--YGDTPRPEDVAK------EGYAGLLLVHSETSTGALADL---PALARAFK 148 (352)
T ss_dssp EEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCTTTSCC------SSCSEEEEESEETTTTEECCH---HHHHHHHH
T ss_pred EEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHhc------cCCcEEEEEEecCCcceecCH---HHHHHHHH
Confidence 9999998865 4556789999999984 345689888866 245688889999999999984 57788899
Q ss_pred hc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc-CcccCCCccceEEEecCCHHHHhhhhhhh-HH
Q 012238 260 EK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK-NLGLYAERIGAMNVVCSSSDLAARCCEVA-VI 335 (467)
Q Consensus 260 ~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK-~~~~~G~RiG~~~~v~~~~~~~~~~~~~~-~~ 335 (467)
++ |+++|+||+|.... ...+. ......+++.|+|| .++++| +||++ .+++.++...... +.
T Consensus 149 ~~~~~~~li~D~a~~~~~---~~~~~-------~~~~~d~~~~s~~K~~~~~~g--~G~~~---~~~~~~~~~~~~~~~~ 213 (352)
T 1iug_A 149 EKNPEGLVGADMVTSLLV---GEVAL-------EAMGVDAAASGSQKGLMCPPG--LGFVA---LSPRALERLKPRGYYL 213 (352)
T ss_dssp HHCTTCEEEEECTTTBTT---BCCCS-------GGGTCSEEEEESSSTTCCCSC--EEEEE---ECHHHHHTCCCCSSTT
T ss_pred hhCCCCEEEEECCccccC---cceec-------cccCeeEEEecCcccccCCCc--eeEEE---ECHHHHHHhhCCCcee
Confidence 99 99999999976211 11111 11124578999999 555445 79986 4565543200000 00
Q ss_pred HHHHHHHhh-ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC-cc
Q 012238 336 QVKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-IG 413 (467)
Q Consensus 336 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~-~g 413 (467)
.+...+... ......+++...+.++..++... .+++++.+++++++++++.+.|+ ++| +++..+. .+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~ 282 (352)
T 1iug_A 214 DLARELKAQKEGESAWTPAINLVLAVAAVLEEV------LPRLEEHLALKAWQNALLYGVGE-EGG----LRPVPKRFSP 282 (352)
T ss_dssp CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHH-HTT----CEESCSSBCT
T ss_pred eHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HCC----CcccccccCC
Confidence 000001111 11123345555555555444321 12256788899999999999999 765 4665553 45
Q ss_pred eEEecC----CCHHH-HHHHHHcccEEEeCC------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238 414 MFSFTG----LNKAQ-SDNMTNKWHVYMTKD------G--RISLAGL-SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 414 ~f~~~~----l~~~~-~~~ll~~~gI~v~~g------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~ 466 (467)
.++|+. .+.+. .+++. ++||.+.+| + ||+++.. +++++++++++|+++++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 283 AVAAFYLPEGVPYARVKEAFA-QRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp TCEEEECCTTCCHHHHHHHHH-TTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 555543 34444 55555 459999876 2 9998854 5799999999999998764
No 110
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=5.7e-28 Score=238.89 Aligned_cols=319 Identities=15% Similarity=0.034 Sum_probs=221.0
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC-C-cchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-I-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~-~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
++++|+.| | . + .++.+.+++.+.+ .+.|.. . .+..++|+++++++. . ..+++++++ |+||+
T Consensus 4 ~~~~~~~g-p----~-~-~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~g-~---~~~~~~v~~--~~g~t 66 (366)
T 1m32_A 4 NYLLLTPG-P----L-T-TSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALAT-A---SEGYTSVLL--QGSGS 66 (366)
T ss_dssp -CEECSSS-S----C-C-CCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHHC-S---SSSEEEEEE--ESCHH
T ss_pred ccccccCC-C----c-C-CCHHHHHHHhhhh----cCCCHHHHHHHHHHHHHHHHHHhC-C---CCcCcEEEE--ecChH
Confidence 46899988 4 1 2 3678888775532 122211 1 688999999999975 2 112357888 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcC-CCCcc-hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISS-PTWGN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~-P~y~~-~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
+++.++ +...+.+||+|++++ |+|+. +...++..|++++.++.+ .++.+|++.+++.+++. .+++++++++|+
T Consensus 67 ~a~~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~ 141 (366)
T 1m32_A 67 YAVEAV--LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG--EVARPDVQAIDAILNAD-PTISHIAMVHSE 141 (366)
T ss_dssp HHHHHH--HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEESEE
T ss_pred HHHHHH--HHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcC-CCeEEEEEeccc
Confidence 999998 343456899988876 56654 667788889999999984 35679999999999853 246678889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEE
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNV 318 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~ 318 (467)
||||.+++ +++|+++|++||+++|+||+|...... .+ + .....++++.|+||.+ +++| +||++
T Consensus 142 nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~~---~----~~~~~di~~~s~~K~~~~~~g--~G~~~- 205 (366)
T 1m32_A 142 TTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP---MD---I----AALHIDYLISSANKCIQGVPG--FAFVI- 205 (366)
T ss_dssp TTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC---CC---T----TTTTCSEEEEESSSTTCCCSS--EEEEE-
T ss_pred CCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC---cc---c----cccCccEEEecCcccccCCCc--eEEEE-
Confidence 99999999 557888899999999999998744321 11 1 1113468899999976 5444 69996
Q ss_pred ecCCHHHHhhhhhhhHHHHHHHHHhhc------------------cCccCCCchHHHHHHHHHhCChhhHHHHHHH--HH
Q 012238 319 VCSSSDLAARCCEVAVIQVKSQLKRLA------------------RPMYSNPPVHGARIVANVVGNPALFDEWKAE--ME 378 (467)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--l~ 378 (467)
.++++++. +.... .....+++...+.++..+|+. +.+. ++
T Consensus 206 --~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~g~~~ 265 (366)
T 1m32_A 206 --AREQKLAA------------CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE------LAKEGGVA 265 (366)
T ss_dssp --EEHHHHTT------------CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH------HHHHTHHH
T ss_pred --ECHHHHHh------------hcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH------HHHccCHh
Confidence 56666665 22110 001124555555555544431 1222 56
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCcccccC---CcceEEecCC------CHH-HHHHHHHcccEEEeCC-----C--e
Q 012238 379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR---QIGMFSFTGL------NKA-QSDNMTNKWHVYMTKD-----G--R 441 (467)
Q Consensus 379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~---~~g~f~~~~l------~~~-~~~~ll~~~gI~v~~g-----g--R 441 (467)
+.+++++++++++.+.|+ ++| +++..+ .+++++|+.+ +.+ +.+.+.+ +||.+.+| + |
T Consensus 266 ~~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~iR 339 (366)
T 1m32_A 266 ARHQRYQQNQRSLVAGMR-ALG----FNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKE-QGFVIYPGKVSQSDCFR 339 (366)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTT----CCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHH-TTEECEECCCSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHH-HCC----CeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHH-CCEEEECCcCCCCCEEE
Confidence 788899999999999998 775 344443 3565666532 344 4555555 59999886 2 9
Q ss_pred EEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238 442 ISLAGL-SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 442 is~~~~-~~~~i~~~~~~l~~~l~~~ 466 (467)
|+++.. +++++++++++|+++++++
T Consensus 340 i~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 340 IGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 998864 6799999999999998765
No 111
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.96 E-value=3.5e-28 Score=243.93 Aligned_cols=325 Identities=11% Similarity=0.094 Sum_probs=220.4
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
...+||+.|...+.-+. .++.+.+++.+.+..... ..| +.....++++.+++++. .+++++ ++||
T Consensus 40 ~~~ld~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~gg 106 (397)
T 2ord_A 40 NAYLDFTSGIAVNVLGH--SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNTF--------GGKVFF--ANTG 106 (397)
T ss_dssp CEEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTTT--------SCEEEE--ESSH
T ss_pred CEEEECCccccccccCC--CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhcC--------CCeEEE--eCCH
Confidence 46899988843112232 367888888887754211 123 34456777777777742 468888 9999
Q ss_pred hhHHHHHHHHHHHh----CC-CCEEEEcCCCCcc-hHHHHhhCCCC------------eEEeeeecCCCCCCChhhHHHH
Q 012238 161 TGSLRLAAALIERY----FP-GAKVLISSPTWGN-HKNIFNDARVP------------WSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 161 t~al~l~~~~l~~~----~~-gd~Vlv~~P~y~~-~~~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
++|+.++...+... .+ +++|++++|+|.. +...++..|.+ ++.++. .|++.+++.
T Consensus 107 ~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~ 179 (397)
T 2ord_A 107 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRK 179 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHH
Confidence 99999984433211 04 4789999999965 44477777775 445543 389999998
Q ss_pred HHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238 223 IKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (467)
Q Consensus 223 l~~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (467)
++ ++++++++++|+||||. +++.+++++|+++|++||+++|+||+|.++.+.+ ....+..+ ....+++ |
T Consensus 180 l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g---~~~~~~~~-~~~~d~~---s 249 (397)
T 2ord_A 180 MS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG---KLFAYQKY-GVVPDVL---T 249 (397)
T ss_dssp CC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHHHH-TCCCSEE---E
T ss_pred hh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc---cchhhhhh-CCCCCee---e
Confidence 87 57889999999999999 9999999999999999999999999998876532 11222222 2223433 7
Q ss_pred CccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHH
Q 012238 302 YSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMA 381 (467)
Q Consensus 302 ~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~ 381 (467)
|||.++ +|+|+||++ .+++++ . +.........+.+.+.+.++..+|+.. .+ ++.+
T Consensus 250 ~sK~~~-~G~r~G~~~---~~~~~~-~------------l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~--~~~~ 304 (397)
T 2ord_A 250 TAKGLG-GGVPIGAVI---VNERAN-V------------LEPGDHGTTFGGNPLACRAGVTVIKEL------TK--EGFL 304 (397)
T ss_dssp ECGGGG-TTSCCEEEE---ECSTTC-C------------CCTTSSCCSSTTCHHHHHHHHHHHHHH------TS--TTHH
T ss_pred eccccC-CCcCeEEEE---EchHhc-c------------cCCCCcCCCCCCCHHHHHHHHHHHHHH------Hh--CCHH
Confidence 899999 899999996 444455 5 433222233456777777776665421 11 3566
Q ss_pred HHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCCC----eEEec-cCCh
Q 012238 382 GRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG----RISLA-GLSL 449 (467)
Q Consensus 382 ~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg----Ris~~-~~~~ 449 (467)
++++++++++.+.|+ ++ +++. +....+.+ .|+|+.+ +. ++.+.+++ +||.+.++| ||+++ ..++
T Consensus 305 ~~~~~~~~~l~~~L~-~~~~~~~~-~~~~~~~g-~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~iRis~~~~~~~ 380 (397)
T 2ord_A 305 EEVEEKGNYLMKKLQ-EMKEEYDV-VADVRGMG-LMIGIQFREEVSNREVATKCFE-NKLLVVPAGNNTIRFLPPLTVEY 380 (397)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHCTT-EEEEEEET-TEEEEEECTTSCHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCc-eEEEEEEe-EEEEEEECChHHHHHHHHHHHH-CCCEEccCCCCEEEEECCcCCCH
Confidence 778888888888887 65 2321 11223444 4555433 23 34556665 699999874 88854 3488
Q ss_pred hhHHHHHHHHHHHHHhc
Q 012238 450 AKCEYLADAIIDSYHNV 466 (467)
Q Consensus 450 ~~i~~~~~~l~~~l~~~ 466 (467)
+++++++++|+++++++
T Consensus 381 e~i~~~~~~l~~~l~~~ 397 (397)
T 2ord_A 381 GEIDLAVETLKKVLQGI 397 (397)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999998753
No 112
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=3.9e-28 Score=241.84 Aligned_cols=322 Identities=14% Similarity=0.052 Sum_probs=217.4
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEE
Q 012238 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vl 181 (467)
+++.+.+++.+.+... ..+.......++++.+++++.... ++++|++ |+||++++. + +...+.+||+|+
T Consensus 13 ~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~----~~~~v~~--~~g~t~al~-~--~~~~~~~gd~vi 81 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF--TSKEFVEALAYSLKGLRYVMGASK----NYQPLII--PGGGTSAME-S--VTSLLKPNDKIL 81 (384)
T ss_dssp CCHHHHHHTTCCSCCT--TSHHHHHHHHHHHHHHHHHHTCCT----TSEEEEE--ESCHHHHHH-H--GGGGCCTTCEEE
T ss_pred CCHHHHHHhhcccccc--ccHHHHHHHHHHHHHHHHHhCCCC----CCcEEEE--cCCcHHHHH-H--HHhhcCCCCEEE
Confidence 4788888776543221 112224567889999999975431 1278988 999999999 7 444577999999
Q ss_pred EcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 012238 182 ISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ 259 (467)
Q Consensus 182 v~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~ 259 (467)
+++|+|.. +...++..|++++.++++ .++.+|++.+++.+++ .+++++++++|+||||.+++ +++|.++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 154 (384)
T 3zrp_A 82 VVSNGVFGDRWEQIFKRYPVNVKVLRPS--PGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVREP---VKDVINKIR 154 (384)
T ss_dssp EECSSHHHHHHHHHHTTSSCEEEEECCS--TTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEECC---HHHHHHHHG
T ss_pred EecCCcchHHHHHHHHHcCCcEEEecCC--CCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceECc---HHHHHHHHH
Confidence 99999955 667778899999999984 3567999999999984 36889999999999999998 557888899
Q ss_pred hcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhh-hhh------
Q 012238 260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARC-CEV------ 332 (467)
Q Consensus 260 ~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~-~~~------ 332 (467)
+||+++|+|++|...... .+. ......+++.|+||.++ .+.++||++ .++++++.- ...
T Consensus 155 ~~~~~li~D~a~~~~~~~---~~~-------~~~~~d~~~~s~~K~~~-~~~g~g~~~---~~~~~~~~~~~~~~~~~~~ 220 (384)
T 3zrp_A 155 KYVELIVVDGVSSVGAEE---VKA-------EEWNVDVYLTASQKALG-SAAGLGLLL---LSPKALSILDSQNSIAGYY 220 (384)
T ss_dssp GGEEEEEEECTTTTTTSC---CCT-------TTTTCSEEEEETTSTTC-CCSSEEEEE---ECHHHHHHHHHCCCSCCST
T ss_pred hcCCEEEEECcccccCcc---ccc-------cccCCCEEEecCccccc-CCCceEEEE---ECHHHHHHhcCCCCCCccc
Confidence 999999999997643321 111 11235688999999885 224489985 677776650 000
Q ss_pred -hHHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 012238 333 -AVIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI 408 (467)
Q Consensus 333 -~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~ 408 (467)
....+....... ....+..++...+.++..++.. + . ...+++++++++++++++.+.|+ ++| +++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~--~-~--~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~ 290 (384)
T 3zrp_A 221 LDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL--I-E--KEGIENRIKRHTMVASAIRAGLE-ALG----LEIV 290 (384)
T ss_dssp TCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--H-H--HHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBS
T ss_pred ccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHH--H-H--hcCHHHHHHHHHHHHHHHHHHHH-HCC----CeEc
Confidence 000011101110 1111124444444444344321 1 1 12267888999999999999999 776 4555
Q ss_pred cCC----cceEEecC---CCHHH-HHHHHHcccEEEeCCC-------eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 409 LRQ----IGMFSFTG---LNKAQ-SDNMTNKWHVYMTKDG-------RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 409 ~~~----~g~f~~~~---l~~~~-~~~ll~~~gI~v~~gg-------Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+. +++++|+. .+.+. .+.+.+ +||.+.+|. ||+++. .+++++++++++|+++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 291 ARRPESYSNTVTGVILKVADPQKVLAGTVN-EGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp CSSGGGBCSSEEEEECSSSCHHHHHHHHHT-TTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCccEEEEECCCCCHHHHHHHHHH-CCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 555 45555543 34444 555554 599998874 999763 37799999999999998764
No 113
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.96 E-value=9.4e-28 Score=240.59 Aligned_cols=334 Identities=13% Similarity=0.070 Sum_probs=223.2
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
...+||+.|.+.+ ...+.++.+.+++.+.+.... ...| +.....++++.+++++.. ++++|++ |+||
T Consensus 45 ~~~ld~~~~~~~~--~~g~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~gg 113 (395)
T 1vef_A 45 NEYIDCVGGYGVA--NLGHGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILPP------ELNRVFP--VNSG 113 (395)
T ss_dssp CEEEESSHHHHTC--TTCBTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSCT------TEEEEEE--ESSH
T ss_pred CEEEEccCccccc--cCCCCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcCC------CcCEEEE--cCcH
Confidence 4689999886422 222237889999888875421 1234 566778888888888531 3678988 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHHhhCCCCeEE---eeeecCC--CCCCChhhHHHHHHcCCCCcEEEE
Q 012238 161 TGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDARVPWSE---YRYYDPK--TVGLDFEGMIADIKAAPGGSFILL 234 (467)
Q Consensus 161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~-~~~~~~~~G~~~~~---v~~~~~~--~~~~d~~~l~~~l~~~~~~~~~i~ 234 (467)
++++.++...+..+.+||+|++++|+|.. +...++..|.+++. +|+..+. -...|++.+++.++ +++++++
T Consensus 114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~---~~~~~v~ 190 (395)
T 1vef_A 114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD---EETAAVI 190 (395)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC---TTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc---cCEEEEE
Confidence 99999984332222578999999999964 55566777775321 1111000 00158999999887 4678888
Q ss_pred eCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc
Q 012238 235 HGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI 313 (467)
Q Consensus 235 i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 313 (467)
+++++||||.++ +.+++++|+++|++||+++|+||+|.++...+. ...+ .......+++ ||||.++. |+|+
T Consensus 191 ~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~---~~~~-~~~~~~~d~~---s~sK~~~~-g~~~ 262 (395)
T 1vef_A 191 LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAF-EHFGIVPDIL---TLAKALGG-GVPL 262 (395)
T ss_dssp ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCCCSEE---EECGGGGT-TSSC
T ss_pred EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc---hhHh-hhcCCCCCEE---EEcccccC-CCce
Confidence 777789999864 788899999999999999999999997654321 1111 1222233433 88999995 9999
Q ss_pred ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 393 (467)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~ 393 (467)
||++ .++++++. +.........+++.+.+.++..+|+.. .+ +...++++++++++.+
T Consensus 263 G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~al~~~------~~--~~~~~~~~~~~~~l~~ 319 (395)
T 1vef_A 263 GVAV---MREEVARS------------MPKGGHGTTFGGNPLAMAAGVAAIRYL------ER--TRLWERAAELGPWFME 319 (395)
T ss_dssp EEEE---EEHHHHHT------------SCTTSSCCSSTTCHHHHHHHHHHHHHH------HH--HTTHHHHHHHHHHHHH
T ss_pred EEEE---ehHHHHhh------------hccCCcCCCcCCCHHHHHHHHHHHHHH------Hh--CCHHHHHHHHHHHHHH
Confidence 9996 55666665 433212223356667776666555321 11 3467788888999999
Q ss_pred HhhhccCCCCCcccccCCcceEEecCC---CHHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHHHHHH
Q 012238 394 SLSAKDKSGKDWSFILRQIGMFSFTGL---NKAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYH 464 (467)
Q Consensus 394 ~l~~~~g~~~~~~~~~~~~g~f~~~~l---~~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~~~l~ 464 (467)
.|+ +++.+. +...+ ..|.|+|+.+ ..++.+.+++++||.+.+++ ||+++ ..+++++++++++|+++++
T Consensus 320 ~l~-~~~~~~-~~~~~-~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 320 KLR-AIPSPK-IREVR-GMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp HHH-TSCCTT-EEEEE-EETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHH-HhhcCc-eEEEE-EEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 998 765311 11122 3455666644 34567777735699999874 88765 3478999999999998763
No 114
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.96 E-value=2.9e-27 Score=241.72 Aligned_cols=334 Identities=11% Similarity=0.055 Sum_probs=220.2
Q ss_pred CCCcEEecCccc-CCCCCC---CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238 82 DEKKLNLGVGAY-RTEELQ---PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG 157 (467)
Q Consensus 82 ~~~~i~l~~G~~-~d~~~~---p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t 157 (467)
+.++++|+.|.+ .|.... ..+++.+.+++. .+ ...|.+..+..+||+++++++.. +++++ |
T Consensus 32 g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~-~~~y~~~~~~~~l~~~la~~~~~--------~~~~~--~ 96 (456)
T 2ez2_A 32 GYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MG-DEAYAGSENFYHLERTVQELFGF--------KHIVP--T 96 (456)
T ss_dssp TTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TC-CCCSSSCHHHHHHHHHHHHHHCC--------SEEEE--E
T ss_pred CCCcccCCcccceeeeccccCCccCCHHHHHHhh----cc-hhhcccChhHHHHHHHHHHHhCC--------CcEEE--e
Confidence 346777777753 332111 123566666554 22 25688888999999999999743 36777 8
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHHhhCCCCeEEeeeecC---C-----CCCCChhhHHHHHHcCC-
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDP---K-----TVGLDFEGMIADIKAAP- 227 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~~~---~-----~~~~d~~~l~~~l~~~~- 227 (467)
+||++|+.++ +...+.+|| +++.|+| ..+...++..|++++.++++++ . ++.+|++.+++.+++..
T Consensus 97 ~~gt~a~~~a--l~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~ 172 (456)
T 2ez2_A 97 HQGRGAENLL--SQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA 172 (456)
T ss_dssp SSHHHHHHHH--HHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG
T ss_pred CCcHHHHHHH--HHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc
Confidence 9999999998 444467999 8889999 7878899999999999988521 1 36789999999997421
Q ss_pred CCcEEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC----------CCCCCCCCChhHHHHHHhcCCeE
Q 012238 228 GGSFILLHGCAHN-PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFATRGMEL 296 (467)
Q Consensus 228 ~~~~~i~i~~p~N-PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~ 296 (467)
.+.+++++++|+| |||.+++.+++++|+++|++||+++|+||+|.. +.+.+ .....+........++
T Consensus 173 ~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d~ 250 (456)
T 2ez2_A 173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN--KSIAEIVHEMFSYADG 250 (456)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTTCSE
T ss_pred cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC--cchhhhhhhhcccCCE
Confidence 2237888899999 999999999999999999999999999999875 33432 1211111011222345
Q ss_pred EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccC--ccCCCchHHHHH-HHHHhCChhhHHHH
Q 012238 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARP--MYSNPPVHGARI-VANVVGNPALFDEW 373 (467)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~-~~~~L~~~~~~~~~ 373 (467)
+++ |++|.++ +| |.||++ +.++++++. +.. +...... ...+.+.....+ +...+
T Consensus 251 ~~~-S~kk~~~-~~-~gG~~~--~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~a~a~~~~--------- 307 (456)
T 2ez2_A 251 CTM-SGKKDCL-VN-IGGFLC--MNDDEMFSS--------AKE-LVVVYEGMPSYGGLAGRDMEAMAIGLR--------- 307 (456)
T ss_dssp EEE-ETTTTTC-CS-SCEEEE--ESCHHHHHH--------HHH-HHHHHTCCTTTTTCCHHHHHHHHHHHH---------
T ss_pred EEE-eCcccCC-CC-ceeEEE--ECCHHHHHH--------HHH-HHhhccCcccccCcchhHHHHHHHHHH---------
Confidence 555 7888765 77 789985 347787776 322 1111000 111222222122 22221
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------C-HHH-----HHHHHHcccEEEeC-
Q 012238 374 KAEM-EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------N-KAQ-----SDNMTNKWHVYMTK- 438 (467)
Q Consensus 374 ~~~l-~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------~-~~~-----~~~ll~~~gI~v~~- 438 (467)
+.+ +...++.+++.+++.+.|+ +.| +.+..|.+++++|+.+ + .++ .+++++++||.+.+
T Consensus 308 -~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~ 381 (456)
T 2ez2_A 308 -EAMQYEYIEHRVKQVRYLGDKLK-AAG----VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMER 381 (456)
T ss_dssp -HHTCHHHHHHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEE
T ss_pred -HHhHHHHHHHHHHHHHHHHHHHh-cCC----CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecc
Confidence 111 2334444555677788887 655 4566677888888642 2 233 45554667997533
Q ss_pred C------------------C--eEEecc--CChhhHHHHHHHHHHHHHh
Q 012238 439 D------------------G--RISLAG--LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 439 g------------------g--Ris~~~--~~~~~i~~~~~~l~~~l~~ 465 (467)
| + ||+++. .+++++++++++|++++++
T Consensus 382 g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 382 GIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp SHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 3 999884 4889999999999999865
No 115
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=1.6e-27 Score=238.01 Aligned_cols=308 Identities=10% Similarity=0.075 Sum_probs=213.9
Q ss_pred chHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE
Q 012238 102 VLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK 179 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~ 179 (467)
+++.+.+++.+... ..|.+ .....++++.+++++.... +++|++ |+||++++.++ +...+.+||+
T Consensus 34 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~~-----~~~v~~--~~gg~~al~~~--~~~~~~~gd~ 100 (393)
T 3kgw_A 34 LAPRVLAAGSLRMI----GHMQKEMLQIMEEIKQGIQYVFQTRN-----PLTLVV--SGSGHCAMETA--LFNLLEPGDS 100 (393)
T ss_dssp CCHHHHHHTTCCCC----CTTSHHHHHHHHHHHHHHHHHHTCCC-----SEEEEE--SCCTTTHHHHH--HHHHCCTTCE
T ss_pred CCHHHHHHhccccc----CcccHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE--eCCcHHHHHHH--HHhcCCCCCE
Confidence 37788877755321 11222 3456788999999865431 345888 99999999998 4445779999
Q ss_pred EEEcCCCCc--chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238 180 VLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 257 (467)
Q Consensus 180 Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~ 257 (467)
|+++.++|. .+...++..|++++.++++ .++.+|++.+++.+++ .+++++++++||||||.+++ +++|.++
T Consensus 101 vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l 173 (393)
T 3kgw_A 101 FLTGTNGIWGMRAAEIADRIGARVHQMIKK--PGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQP---LDGFGEL 173 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred EEEEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhcc---HHHHHHH
Confidence 999998885 3367788899999999984 3457999999999984 26678899999999999998 5578888
Q ss_pred HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCccceEEEecCCHHHHhhhhhhhHHH
Q 012238 258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARCCEVAVIQ 336 (467)
Q Consensus 258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~ 336 (467)
|++||+++|+||+|...... .+. ......+++.|+||.+ +++| +||++ .++++++.
T Consensus 174 ~~~~~~~li~De~~~~g~~~---~~~-------~~~~~d~~~~s~sK~~~~~~g--~g~~~---~~~~~~~~-------- 230 (393)
T 3kgw_A 174 CHRYQCLLLVDSVASLGGVP---IYM-------DQQGIDIMYSSSQKVLNAPPG--ISLIS---FNDKAKYK-------- 230 (393)
T ss_dssp HHHTTCEEEEECTTTTTTSC---CCT-------TTTTCCEEEEESSSTTCCCSS--CEEEE---ECHHHHHH--------
T ss_pred HHHcCCEEEEECCccccCcc---cch-------hhcCCCEEEecCcccccCCCc--eeEEE---ECHHHHHH--------
Confidence 99999999999997632211 110 1123467889999976 4444 89985 67777776
Q ss_pred HHHHHHhhcc-----------------------CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 337 VKSQLKRLAR-----------------------PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 393 (467)
Q Consensus 337 ~~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~ 393 (467)
+..... ....+++...+.++..++... . +..+++..++++++++.+.+
T Consensus 231 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~--~~~~~~~~~~~~~~~~~l~~ 301 (393)
T 3kgw_A 231 ----VYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI---A--EQGLENCWRRHREATAHLHK 301 (393)
T ss_dssp ----HHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH---H--HHCHHHHHHHHHHHHHHHHH
T ss_pred ----HhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH---H--HhhHHHHHHHHHHHHHHHHH
Confidence 433211 112234554544444443211 1 22367888999999999999
Q ss_pred HhhhccCCCCCcccccCC----cceEEecC----CCH-HHHHHHHHcccEEEeCC------C--eEEe-ccC-ChhhHHH
Q 012238 394 SLSAKDKSGKDWSFILRQ----IGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G--RISL-AGL-SLAKCEY 454 (467)
Q Consensus 394 ~l~~~~g~~~~~~~~~~~----~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g--Ris~-~~~-~~~~i~~ 454 (467)
.|+ ++| +++..+. .++++|+. .+. ++.+.+++++||.+.+| + ||++ +.. +++++++
T Consensus 302 ~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~ 376 (393)
T 3kgw_A 302 HLQ-EMG----LKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDR 376 (393)
T ss_dssp HHH-HTT----CCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHH
T ss_pred HHH-HcC----CeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHH
Confidence 999 776 3444332 24444443 344 45666766669999986 2 9998 543 7899999
Q ss_pred HHHHHHHHHHhc
Q 012238 455 LADAIIDSYHNV 466 (467)
Q Consensus 455 ~~~~l~~~l~~~ 466 (467)
++++|+++++++
T Consensus 377 ~~~~l~~~l~~~ 388 (393)
T 3kgw_A 377 VAEALREALQHC 388 (393)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 116
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=4.9e-27 Score=236.06 Aligned_cols=324 Identities=14% Similarity=0.022 Sum_probs=220.9
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC---CCcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ 156 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~---~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~ 156 (467)
+.+.|..+.+ . ++++.+.+++.+.+.... ...|. ...+..++|+++++++.. ++++|++
T Consensus 26 ~~~~ld~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~-- 91 (406)
T 3cai_A 26 GWVHFDAPAG----M--LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNA------DPGGVVL-- 91 (406)
T ss_dssp SCEECBGGGC----C--CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE--
T ss_pred CeEEEeCCCc----C--CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--
Confidence 4788887765 3 347889999988775321 12242 245789999999999753 2678998
Q ss_pred cCCchhHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHhh----CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238 157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF 231 (467)
Q Consensus 157 t~ggt~al~l~~~~l~-~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 231 (467)
|+|+++++.++...+. .+.+||+|+++.|+|..+...+.. .|++++.++++ ++++.+|++.+++.++ ++++
T Consensus 92 ~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~l~---~~~~ 167 (406)
T 3cai_A 92 GADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVD-IETGELPTWQWESLIS---KSTR 167 (406)
T ss_dssp ESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCC-TTTCCCCGGGHHHHCC---TTEE
T ss_pred eCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecC-cccCCcCHHHHHHHhC---CCce
Confidence 9999999999732211 156999999999999876555443 69999999984 2456799999999987 5788
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238 232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE 311 (467)
Q Consensus 232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (467)
++++++|+||||.+++. ++|.++|+++|+++|+|++|..... ..+ +.. . ..++++.|+||.+| ++
T Consensus 168 ~v~~~~~~nptG~~~~l---~~i~~l~~~~~~~li~D~a~~~g~~---~~~---~~~---~-~~d~~~~s~~K~~g-~~- 232 (406)
T 3cai_A 168 LVAVNSASGTLGGVTDL---RAMTKLVHDVGALVVVDHSAAAPYR---LLD---IRE---T-DADVVTVNAHAWGG-PP- 232 (406)
T ss_dssp EEEEESBCTTTCBBCCC---HHHHHHHHHTTCEEEEECTTTTTTC---CCC---HHH---H-CCSEEEEEGGGGTS-CS-
T ss_pred EEEEeCCcCCccccCCH---HHHHHHHHHcCCEEEEEcccccCCC---CCC---chh---c-CCCEEEeehhhhcC-CC-
Confidence 99999999999999984 5777889999999999999863221 111 111 1 34688999999887 54
Q ss_pred ccc-eEEEecCCHHHHhhhhhhhHHHHHHHHHhhcc---------CccCCCchHHHHHHHHHhCChh---------hHHH
Q 012238 312 RIG-AMNVVCSSSDLAARCCEVAVIQVKSQLKRLAR---------PMYSNPPVHGARIVANVVGNPA---------LFDE 372 (467)
Q Consensus 312 RiG-~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~L~~~~---------~~~~ 372 (467)
+| |++ .++++++. ++.... .....++...+.++..+++... ....
T Consensus 233 -~G~~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 296 (406)
T 3cai_A 233 -IGAMVF---RDPSVMNS------------FGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRER 296 (406)
T ss_dssp -CEEEEE---SCHHHHHT------------SCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHH
T ss_pred -cCeEEE---EehHHHhh------------cCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhh
Confidence 89 885 67776665 433211 0122344444333333332100 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC---cceEEec---CCCHHHHHHHHHcccEEEeCC-------
Q 012238 373 WKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IGMFSFT---GLNKAQSDNMTNKWHVYMTKD------- 439 (467)
Q Consensus 373 ~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~---~g~f~~~---~l~~~~~~~ll~~~gI~v~~g------- 439 (467)
|.+.+++++++++++++++.+.|+ +++ + +++..+. ++ ++++ +.+.+.+.+.+.++||.+.+|
T Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~L~-~~~--~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~ 371 (406)
T 3cai_A 297 LAVSMQSADAYLNRVFDYLMVSLR-SLP--L-VMLIGRPEAQIP-VVSFAVHKVPADRVVQRLADNGILAIANTGSRVLD 371 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCT--T-EEECCCCSSBCS-EEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHh-cCC--C-eEEcCCccccCC-EEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHH
Confidence 333577888999999999999998 752 1 4555443 45 3433 334544444445579998763
Q ss_pred --------C--eEEeccC-ChhhHHHHHHHHHH
Q 012238 440 --------G--RISLAGL-SLAKCEYLADAIID 461 (467)
Q Consensus 440 --------g--Ris~~~~-~~~~i~~~~~~l~~ 461 (467)
+ ||+++.. +++++++++++|++
T Consensus 372 ~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 372 VLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp HHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred HcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 3 9998753 57899999999875
No 117
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.96 E-value=2.1e-27 Score=234.22 Aligned_cols=327 Identities=13% Similarity=0.008 Sum_probs=224.2
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+++.|||+.+.+ .. +++.+++++.+.... ....|.+.....++++.+++++. . +.+|++ |+||+
T Consensus 6 ~~~~id~~~~~~----~~--~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g-~------~~~v~~--~~~gt 69 (356)
T 1v72_A 6 RPPALGFSSDNI----AG--ASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFE-R------DVEVFL--VPTGT 69 (356)
T ss_dssp CCCCCBCSCGGG----CC--CCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHT-S------CCEEEE--ESCHH
T ss_pred CCceEeeccCCc----cC--CCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHhC-C------CCcEEE--eCCcc
Confidence 357899998765 32 278899998887532 23567666777889999999864 2 446788 89999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--HhhC--CCCeEEeeeecCCCCCCChhhHHH-HHHcC----CCCcEE
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNI--FNDA--RVPWSEYRYYDPKTVGLDFEGMIA-DIKAA----PGGSFI 232 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~--~~~~--G~~~~~v~~~~~~~~~~d~~~l~~-~l~~~----~~~~~~ 232 (467)
+++.++ +.....+||+|+++.|+|..+... ++.. |++++.+|.+ ++.+|++.+++ .+++. ..++++
T Consensus 70 ~a~~~a--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 70 AANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp HHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred HHHHHH--HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceE
Confidence 999987 443456999999999998765544 6666 9999988873 36799999999 88631 125788
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC--CCCCCChhHHHHHHhcCCeEEEEecCccCcccCC
Q 012238 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA 310 (467)
Q Consensus 233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 310 (467)
+++++||| ||.+++.+++++|+++|++||+++|+|++|..+.. .+....... .....++ ++.|+||. +
T Consensus 145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~~~d~-~~~s~sK~-g--- 214 (356)
T 1v72_A 145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT----WKAGVDA-LSFGATKN-G--- 214 (356)
T ss_dssp EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT----GGGTCCE-EEECCGGG-T---
T ss_pred EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh----hhhcCCE-EEEecccC-C---
Confidence 88899987 99999999999999999999999999999865321 111011000 0112334 45699998 3
Q ss_pred Cccc--eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238 311 ERIG--AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 388 (467)
Q Consensus 311 ~RiG--~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r 388 (467)
.|+| |++ .++++++. +.. +.... ..........+..+...+.+.. ..+..+++++++
T Consensus 215 ~~~G~g~~~---~~~~~~~~--------~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~ 273 (356)
T 1v72_A 215 VLAAEAIVL---FNTSLATE--------MSY-RRKRA-GHLSSKMRFLSAQIDAYLTDDL--------WLRNARKANAAA 273 (356)
T ss_dssp CSSCEEEEE---SSGGGHHH--------HHH-HHHHT-TCCCSSTHHHHHHHHHHTSTTH--------HHHHHHHHHHHH
T ss_pred CcCccEEEE---ECHHHHhh--------HHH-Hhhcc-CchhhhHHHHHHHHHHHHHhhh--------HHHHHHHHHHHH
Confidence 4677 653 67777776 322 11111 1111223333333344454421 223456677888
Q ss_pred HHHHHHhhhcc-CCCCCcccccCCcceEEecCCCHHHHHHHHHcccEEEeCC----C--eEEecc-CChhhHHHHHHHHH
Q 012238 389 QKLFDSLSAKD-KSGKDWSFILRQIGMFSFTGLNKAQSDNMTNKWHVYMTKD----G--RISLAG-LSLAKCEYLADAII 460 (467)
Q Consensus 389 ~~l~~~l~~~~-g~~~~~~~~~~~~g~f~~~~l~~~~~~~ll~~~gI~v~~g----g--Ris~~~-~~~~~i~~~~~~l~ 460 (467)
+++.+.|+ ++ | +++..+.+++|+|+.+..++.+++.+ +||.+.+| + ||++.. .+++++++++++|+
T Consensus 274 ~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 347 (356)
T 1v72_A 274 QRLAQGLE-GLGG----VEVLGGTEANILFCRLDSAMIDALLK-AGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVR 347 (356)
T ss_dssp HHHHHHHT-TCTT----EEEESCCCSSEEEEEECHHHHHHHHH-TTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-hCCC----cEEccCCCccEEEEEcCHHHHHHHHh-cCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 99999998 64 3 56656777888888777777777765 59999865 3 998753 37899999999999
Q ss_pred HHHHhc
Q 012238 461 DSYHNV 466 (467)
Q Consensus 461 ~~l~~~ 466 (467)
+++++.
T Consensus 348 ~~l~~~ 353 (356)
T 1v72_A 348 LAADRT 353 (356)
T ss_dssp HTC---
T ss_pred HHHHhh
Confidence 987653
No 118
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=3.3e-27 Score=237.47 Aligned_cols=319 Identities=12% Similarity=0.022 Sum_probs=220.1
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCc-eeeeecCC
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLS 159 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~g 159 (467)
+..+.|+-|- ..+++.+.+++.+... ..|.+ .....++++.+++++... .++ +++ ++|
T Consensus 12 ~~~~~~~pgp-------~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~------~~~~v~~--~~s 72 (411)
T 3nnk_A 12 PSRLLMGPGP-------INADPRVLRAMSSQLI----GQYDPAMTHYMNEVMALYRGVFRTE------NRWTMLV--DGT 72 (411)
T ss_dssp CCCEEESSSC-------CCCCHHHHHHHTSCCC----CTTCHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--ESC
T ss_pred ccceeecCCC-------CCCCHHHHHHhhcccc----ccccHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCC
Confidence 3556666442 2247788877754321 12222 234578888899887543 333 666 889
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~ 237 (467)
|++++.++ +...+.+||+|+++.|+|.. +...++..|++++.+++ +.++.+|++.+++.+++ .+++++++++
T Consensus 73 gt~al~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~ 146 (411)
T 3nnk_A 73 SRAGIEAI--LVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEV--PWGEVFTPDQVEDAVKR--IRPRLLLTVQ 146 (411)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH--HCCSEEEEES
T ss_pred cHHHHHHH--HHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHhh--CCCeEEEEeC
Confidence 99999998 44457799999999999976 88899999999999998 44677899999999984 2667888899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN 317 (467)
Q Consensus 238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (467)
||||||.+.+ +++|+++|++||+++|+||++...... .+. ......+++.|++|.++ .+.++||++
T Consensus 147 ~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~~~-------~~~~~d~~~~s~~K~l~-~~~g~g~~~ 212 (411)
T 3nnk_A 147 GDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGNP---LET-------DVWGLDAVSAGMQKCLG-GPSGTSPIT 212 (411)
T ss_dssp EETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC---CCT-------TTTTCSEEECCSTTTTC-CCSSEEEEE
T ss_pred CCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCcc---cch-------hccCCcEEEecCccccC-CCCceEEEE
Confidence 9999999988 557788899999999999996532211 111 11134688999999743 233589985
Q ss_pred EecCCHHHHhhhhhhhHHHHHHHHHhhc------------------------------------cCccCCCchHHHHHHH
Q 012238 318 VVCSSSDLAARCCEVAVIQVKSQLKRLA------------------------------------RPMYSNPPVHGARIVA 361 (467)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~~ 361 (467)
.++++++. +.... ......++...+.++.
T Consensus 213 ---~~~~~~~~------------~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 277 (411)
T 3nnk_A 213 ---LSARMEEA------------IRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAR 277 (411)
T ss_dssp ---ECHHHHHH------------HHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHH
T ss_pred ---ECHHHHHH------------HhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHH
Confidence 67777766 43321 1111234444444444
Q ss_pred HHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCc---ceEEecC----CCHH-HHHHHHHcc
Q 012238 362 NVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI---GMFSFTG----LNKA-QSDNMTNKW 432 (467)
Q Consensus 362 ~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~---g~f~~~~----l~~~-~~~~ll~~~ 432 (467)
.++.. +.+. +++.+++++++++++.+.|+ ++| +++..+.+ +.++++. .+.+ +.+.+++++
T Consensus 278 ~al~~------~~~~g~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 346 (411)
T 3nnk_A 278 ECARL------ILQEGLDYGIARHKLHGDALVKGIQ-AMG----LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDF 346 (411)
T ss_dssp HHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHH------HHHhhHHHHHHHHHHHHHHHHHHHH-HcC----CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhc
Confidence 44321 1233 67888999999999999999 776 34444432 3444442 3444 456666767
Q ss_pred cEEEeCC------C--eEEe-ccC-ChhhHHHHHHHHHHHHHhc
Q 012238 433 HVYMTKD------G--RISL-AGL-SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 433 gI~v~~g------g--Ris~-~~~-~~~~i~~~~~~l~~~l~~~ 466 (467)
||.+.+| + ||++ +.. +++++++++++|+++++++
T Consensus 347 gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 347 GIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp SEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 9999876 2 9998 533 6799999999999998764
No 119
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.96 E-value=1.1e-27 Score=238.65 Aligned_cols=319 Identities=13% Similarity=0.043 Sum_probs=203.6
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (467)
++||++.|.+ ..+ +++.+++++. .. ..| ..-..++++.++++++.. +++++++ ++||+++
T Consensus 29 ~v~~~~~~~~----~~~-~~~~v~~a~~-----~~-~~~--~~~~~~~~~~~a~~~g~~-----~~~~~~~--~~ggt~a 88 (374)
T 2aeu_A 29 ALYDLSGLSG----GFL-IDEKDKALLN-----TY-IGS--SYFAEKVNEYGLKHLGGD-----ENDKCVG--FNRTSSA 88 (374)
T ss_dssp GCEECSSCCC----CCC-CCHHHHHHHT-----ST-THH--HHHHHHHHHHHHHHHTCC-----TTEEEEE--ESSHHHH
T ss_pred ceeeecccCC----CCC-CCHHHHHHHH-----Hh-cCc--hHHHHHHHHHHHHHhCCC-----CcceEEE--EcChHHH
Confidence 6899998875 333 4788888774 11 111 111234444454554321 2467888 8999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE-EEeCCCC
Q 012238 164 LRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI-LLHGCAH 239 (467)
Q Consensus 164 l~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~-i~i~~p~ 239 (467)
+.++ + ..+ +||+|+++.|+|+.+.. .++..|++++.+ .|++.+++. + +++++ +++++||
T Consensus 89 ~~~~--~-~~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~---~~~~~~v~~~~p~ 151 (374)
T 2aeu_A 89 ILAT--I-LAL-KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I---DKDTLVIITGSTM 151 (374)
T ss_dssp HHHH--H-HHH-CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C---CTTEEEEEECBCT
T ss_pred HHHH--H-HhC-CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C---CCccEEEEEccCC
Confidence 9997 3 334 99999999998876544 677889988877 278888776 3 56788 8899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
||||. +.+++++|+++|++||+++|+||+|..+..+.. ...... .. ..+++++|+||.+ +|+|+||++
T Consensus 152 nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~----~~-~~di~~~S~sK~l--~g~~~G~~~-- 219 (374)
T 2aeu_A 152 DLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPAL----KL-GADLVVTSTDKLM--EGPRGGLLA-- 219 (374)
T ss_dssp TSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHH----HH-TCSEEEEETTSSS--SSCSCEEEE--
T ss_pred CCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCcc----cc-CCcEEEecCcccc--cCcceEEEE--
Confidence 99997 788999999999999999999999876531000 010011 11 2358899999985 578999985
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
+++++++. ++........+++.+.+.++...|..... +.+.+..++.+...++.++.+.+.|. .+
T Consensus 220 -~~~~~~~~------------l~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~-~~ 284 (374)
T 2aeu_A 220 -GKKELVDK------------IYIEGTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNFDLSKIEKLNKELK-AI 284 (374)
T ss_dssp -EEHHHHHH------------HHHHHHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCCCHHHHHHHHHHT-TT
T ss_pred -ECHHHHHH------------HHHhhccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-hh
Confidence 67788777 44443333335667777777666643211 01111111111111122555666665 42
Q ss_pred CCCCCcccc-cCCcceEEecCCCH--------HHHHHHHHcccEEEeCC-----C----eEEeccCCh--hhHHHHHHHH
Q 012238 400 KSGKDWSFI-LRQIGMFSFTGLNK--------AQSDNMTNKWHVYMTKD-----G----RISLAGLSL--AKCEYLADAI 459 (467)
Q Consensus 400 g~~~~~~~~-~~~~g~f~~~~l~~--------~~~~~ll~~~gI~v~~g-----g----Ris~~~~~~--~~i~~~~~~l 459 (467)
.-..++.+. .+.+.+|.|..... +++.++++++||.+.|| + ||+++..+. .+++++.++|
T Consensus 285 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l 364 (374)
T 2aeu_A 285 DDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAI 364 (374)
T ss_dssp CTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHH
T ss_pred hhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHH
Confidence 100013443 45555556654432 15567777789999886 1 999975322 3489999999
Q ss_pred HHHHHhc
Q 012238 460 IDSYHNV 466 (467)
Q Consensus 460 ~~~l~~~ 466 (467)
+++++++
T Consensus 365 ~~~l~~~ 371 (374)
T 2aeu_A 365 VESIKMA 371 (374)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 120
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.96 E-value=9.5e-28 Score=238.52 Aligned_cols=321 Identities=13% Similarity=0.019 Sum_probs=212.9
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCCC---CcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHH
Q 012238 95 TEELQPYVLDVVKKAENLMLERGEN---KEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA 167 (467)
Q Consensus 95 d~~~~p~~~~~v~~a~~~~~~~~~~---~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~ 167 (467)
|.+...++++.+.+++.+.+..... ..|. ......++++.+++++... +++|++ |+|+++++.++
T Consensus 5 d~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~i~~--~~g~~~a~~~~ 76 (382)
T 4hvk_A 5 DYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG------GGTVVF--TSGATEANNLA 76 (382)
T ss_dssp BTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT------TEEEEE--ESSHHHHHHHH
T ss_pred cCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC------cCeEEE--ECCchHHHHHH
Confidence 3334444578899999888754210 1121 1233557888888886432 678988 99999999998
Q ss_pred HHHHHHh----CCCCEEEEcCCCCcchHHHHhh---CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238 168 AALIERY----FPGAKVLISSPTWGNHKNIFND---ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (467)
Q Consensus 168 ~~~l~~~----~~gd~Vlv~~P~y~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N 240 (467)
. .... .+||+|+++.|+|+.+...++. .|++++.++++ .++.+|++.+++.++ ++++++++++|+|
T Consensus 77 ~--~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~n 149 (382)
T 4hvk_A 77 I--IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR---DDTILVSVQHANN 149 (382)
T ss_dssp H--HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEECCSBCT
T ss_pred H--HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCCcCHHHHHHHhc---cCceEEEEECCCC
Confidence 3 3334 7999999999999988775544 69999999984 456799999999987 5788999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEec
Q 012238 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~ 320 (467)
|||.+.+.+ +|+++|++||+ +|+|++|...... .+ .. .....+++.|+||.+|++| +|+++ +
T Consensus 150 ptG~~~~~~---~i~~l~~~~~~-li~D~a~~~~~~~---~~---~~----~~~~d~~~~s~~K~~g~~g--~g~~~--~ 211 (382)
T 4hvk_A 150 EIGTIQPVE---EISEVLAGKAA-LHIDATASVGQIE---VD---VE----KIGADMLTISSNDIYGPKG--VGALW--I 211 (382)
T ss_dssp TTCBBCCHH---HHHHHHSSSSE-EEEECTTTBTTBC---CC---HH----HHTCSEEEEESGGGTSCTT--CEEEE--E
T ss_pred CceeeCCHH---HHHHHHHHcCE-EEEEhHHhcCCCC---CC---ch----hcCCCEEEEeHHHhcCCCc--eEEEE--E
Confidence 999999855 77777999999 9999996532211 11 11 1124588999999988777 56665 2
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 400 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g 400 (467)
.++..+.. ...............++...+.++..++. + ..+.+++.+++++++++++.+.|+ +++
T Consensus 212 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~ 276 (382)
T 4hvk_A 212 RKEAKLQP--------VILGGGQENGLRSGSENVPSIVGFGKAAE---I---TAMEWREEAERLRRLRDRIIDNVL-KIE 276 (382)
T ss_dssp ETTCCCCC--------SSCSSCTGGGTSCSCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHT-TST
T ss_pred cCccCcCc--------ccccCCCcCccccCCcCHHHHHHHHHHHH---H---HHhhHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 32211111 00000000011122334444444444432 1 134577889999999999999998 763
Q ss_pred CCCCcccccCCc----ceEEe--cCCCHHHHHHHHHcccEEEeCC-------------------------C--eEEecc-
Q 012238 401 SGKDWSFILRQI----GMFSF--TGLNKAQSDNMTNKWHVYMTKD-------------------------G--RISLAG- 446 (467)
Q Consensus 401 ~~~~~~~~~~~~----g~f~~--~~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ris~~~- 446 (467)
. +.+..+.+ +++.+ .+.+.+.+.+.++++||.+.+| + ||+++.
T Consensus 277 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~ 353 (382)
T 4hvk_A 277 E---SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRY 353 (382)
T ss_dssp T---EEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTT
T ss_pred C---eEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCC
Confidence 1 45554432 22222 2455555555555679999874 3 999884
Q ss_pred CChhhHHHHHHHHHHHHHhc
Q 012238 447 LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 447 ~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+++++++++++|+++++++
T Consensus 354 ~t~e~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 354 NTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 36789999999999998754
No 121
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.95 E-value=6.2e-27 Score=237.73 Aligned_cols=335 Identities=13% Similarity=0.061 Sum_probs=212.5
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.+|++.|.+...-+. .+|.|.+++.+.+.......| +.....+|++++++++. . +++|++ ++||+
T Consensus 54 g~~ylD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-~------~~~v~~--~~sGs 121 (434)
T 3l44_A 54 GNKYIDYLAAYGPIITGH--AHPHITKAITTAAENGVLYGT-PTALEVKFAKMLKEAMP-A------LDKVRF--VNSGT 121 (434)
T ss_dssp CCEEEECCGGGTTCSSCB--TCHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHCT-T------CSEEEE--ESSHH
T ss_pred CCEEEECCCchhccccCC--CCHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCC-C------CCEEEE--eCchH
Confidence 357899998875333333 378899999888765433444 66778889999999853 1 678999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC-eEEeeeecCCCCC-------------CChhhHHHHHHcCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVG-------------LDFEGMIADIKAAP 227 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~~~-------------~d~~~l~~~l~~~~ 227 (467)
+++.++..+.....++++|++..|+|..+...+...+.. ...+.. +...+. .|++.+++.+++.+
T Consensus 122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 200 (434)
T 3l44_A 122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGT-PDSAGVPQSIAQEVITVPFNNVETLKEALDKWG 200 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCC-BSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCC-CCcCCCCCcCCCceEecCcccHHHHHHHHHhCC
Confidence 999998544333347789999999998765544333221 111111 000000 28999999987533
Q ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc
Q 012238 228 GGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 306 (467)
+++.+++++.++|++|.+. +.+.+++|.++|++||+++|+||+|.+|..+ ..... .......+ +.+|||.+
T Consensus 201 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g----~~~~~-~~~~~~~d---i~t~sK~~ 272 (434)
T 3l44_A 201 HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFM----YGGAQ-DLLGVTPD---LTALGKVI 272 (434)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSS----SSCHH-HHHTCCCS---EEEEEGGG
T ss_pred CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceecc----ccHHH-HHcCCCCC---eeehhhhh
Confidence 4556666665566666655 8888999999999999999999999988322 11112 12222233 45789999
Q ss_pred ccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012238 307 GLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 383 (467)
Q Consensus 307 ~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~ 383 (467)
+ +|+|+||++ +++++++. +... ......+.+.+++.++..+|+... + ++..++
T Consensus 273 ~-~G~~iG~~~---~~~~i~~~------------~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~--~~~~~~ 328 (434)
T 3l44_A 273 G-GGLPIGAYG---GKKEIMEQ------------VAPLGPAYQAGTMAGNPASMASGIACLEVLQ------Q--EGLYEK 328 (434)
T ss_dssp G-TTSSCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHH
T ss_pred c-CCcCeeeEE---EcHHHHHh------------hccCCCcccCCCCCcCHHHHHHHHHHHHHHH------c--ccHHHH
Confidence 9 899999995 78888776 5432 122244667777777766654110 0 123333
Q ss_pred HHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEec--C--C---------C----HHHHHHHHHcccEEEeCCC---
Q 012238 384 IKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFT--G--L---------N----KAQSDNMTNKWHVYMTKDG--- 440 (467)
Q Consensus 384 ~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~--~--l---------~----~~~~~~ll~~~gI~v~~gg--- 440 (467)
++++++++.+.|++ ..+. .....+.+.++.|. + . + .++.+.+++ +||.+.+++
T Consensus 329 ~~~~~~~l~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~ 404 (434)
T 3l44_A 329 LDELGATLEKGILEQAAKHNI---DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSKYEA 404 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSSTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCC---CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecCCCc
Confidence 44444444444440 3332 22334455544331 1 0 1 234555655 599999986
Q ss_pred -eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 441 -RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 -Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
|+++.. +++++++++++|+++++++
T Consensus 405 ~rl~~~~-t~e~i~~~l~~l~~~l~~~ 430 (434)
T 3l44_A 405 WFLTTEH-TKEDIEYTIEAVGRAFAAL 430 (434)
T ss_dssp EECCTTC-CHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccc-CHHHHHHHHHHHHHHHHHH
Confidence 776555 8999999999999998764
No 122
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.95 E-value=2.8e-27 Score=232.68 Aligned_cols=317 Identities=11% Similarity=0.002 Sum_probs=211.6
Q ss_pred chHHHHHHHHHHHhcCCCCcCC-CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEE
Q 012238 102 VLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~V 180 (467)
+++.+.+++.+.+.. +.|. ...+..++|+++++++... .+++++++ |+||++++.++ +..+.+ |+|
T Consensus 11 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~----~~~~~v~~--t~g~t~a~~~~---~~~~~~-d~v 77 (353)
T 2yrr_A 11 IPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDPG----EGALVAAL--AGSGSLGMEAG---LANLDR-GPV 77 (353)
T ss_dssp CCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCCC----TTCEEEEE--SSCHHHHHHHH---HHTCSC-CCE
T ss_pred CCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCCC----CCCceEEE--cCCcHHHHHHH---HHHhcC-CcE
Confidence 378888887665532 2231 2356899999999997432 23568888 99999999997 333444 899
Q ss_pred EEcCCCCcch--HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012238 181 LISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258 (467)
Q Consensus 181 lv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~ 258 (467)
++++|+|+.+ ...++..|++++.++.+ .++.+|++.+++.+++. +++++++++|+||||.+++. ++|.++|
T Consensus 78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~---~~i~~l~ 150 (353)
T 2yrr_A 78 LVLVNGAFSQRVAEMAALHGLDPEVLDFP--PGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNPA---EAIGALA 150 (353)
T ss_dssp EEEECSHHHHHHHHHHHHTTCCEEEEECC--TTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECCH---HHHHHHH
T ss_pred EEEcCCCchHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecCH---HHHHHHH
Confidence 9999999875 45667899999999984 35679999999999842 56688889999999999985 4777889
Q ss_pred HhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccceEEEecCCHHHHhhhhh-h-hHH
Q 012238 259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAMNVVCSSSDLAARCCE-V-AVI 335 (467)
Q Consensus 259 ~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~~~v~~~~~~~~~~~~-~-~~~ 335 (467)
++||+++|+||+|. +... .. .+.. . ...+++.|++|. ++++| +||++ .++++++.-.. . .+.
T Consensus 151 ~~~~~~li~D~a~~-~~~~--~~---~~~~---~-~~d~~~~s~~K~~~~~~g--~G~~~---~~~~~~~~l~~~~~~~~ 215 (353)
T 2yrr_A 151 KEAGALFFLDAVTT-LGML--PF---SMRA---M-GVDYAFTGSQKCLSAPPG--LAPIA---ASLEARKAFTGKRGWYL 215 (353)
T ss_dssp HHHTCEEEEECTTT-TTTS--CC---CHHH---H-TCSEEECCTTSTTCCCSS--CEEEE---ECHHHHHHCCCCSCSTT
T ss_pred HHcCCeEEEEcCcc-cccc--cc---cccc---c-CceEEEecCcccccCCCc--eEEEE---ECHHHHHHhccCCCccc
Confidence 99999999999985 3211 11 1211 1 234778899995 45566 69996 66776655000 0 000
Q ss_pred HHHHHHHhh-ccCccCCCchHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC--
Q 012238 336 QVKSQLKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-- 411 (467)
Q Consensus 336 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~-- 411 (467)
......... ......+++...+.++..++.. +.+. +++++++++++++++.+.|+ ++| +++..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~ 284 (353)
T 2yrr_A 216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL------VLEEGVAARERRAREVYAWVLEELK-ARG----FRPYPKASP 284 (353)
T ss_dssp CHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH-HTT----CEESCSSSB
T ss_pred cHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHH-HCC----CccccCccC
Confidence 000000000 1111234555555555444421 1222 66788999999999999998 765 4555443
Q ss_pred cceEEecC----CCHHH-HHHHHHcccEEEeCC------C--eEEe-ccCChhhHH-HHHHHHHHHHHh
Q 012238 412 IGMFSFTG----LNKAQ-SDNMTNKWHVYMTKD------G--RISL-AGLSLAKCE-YLADAIIDSYHN 465 (467)
Q Consensus 412 ~g~f~~~~----l~~~~-~~~ll~~~gI~v~~g------g--Ris~-~~~~~~~i~-~~~~~l~~~l~~ 465 (467)
+++++|+. .+.+. .+.+.+ +||.+.+| + ||++ ...++++++ +++++|+++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 285 LPTVLVVRPPEGVDADRLVRALYA-EGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp CTTEEEEECCTTCCHHHHHHHHHH-TTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-CCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 45554443 34444 555555 59999875 2 9998 434778998 999999998764
No 123
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.95 E-value=4e-27 Score=237.26 Aligned_cols=318 Identities=11% Similarity=-0.008 Sum_probs=217.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC--CcchHHHHHHHHHHHhCCCCcccccCcee-eeecCC
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVA-TVQGLS 159 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~-~~~t~g 159 (467)
+..+.|+-|. ..+++.+.+++.+. ....|.+ .....++++.+++++... +++++ + ++|
T Consensus 10 ~~~~~~~p~p-------~~~~~~v~~a~~~~----~~~~~~~~~~~~~~~l~~~la~~~g~~------~~~~~~~--~~s 70 (416)
T 3isl_A 10 PLRTIMTPGP-------VEVDPRVLRVMSTP----VVGQFDPAFTGIMNETMEMLRELFQTK------NRWAYPI--DGT 70 (416)
T ss_dssp CCCEECSSSS-------CCCCHHHHHHTTSC----CCCTTSHHHHHHHHHHHHHHHHHTTCC------CSEEEEE--ESC
T ss_pred ccceeecCCC-------cCcCHHHHHHhccc----CCCCccHHHHHHHHHHHHHHHHHhCCC------CCcEEEe--cCc
Confidence 3556666432 22367777665442 1122322 344678888888886532 44554 5 889
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~ 237 (467)
+++++.++ +...+.+||+|+++.|+|.. +...++..|++++.++.+ .++.+|++.+++.+++ ++++++++++
T Consensus 71 ~t~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~ 144 (416)
T 3isl_A 71 SRAGIEAV--LASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE--WGTVFDPEDIIREIKK--VKPKIVAMVH 144 (416)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEES
T ss_pred HHHHHHHH--HHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC--CCCCCCHHHHHHHHhh--CCCcEEEEEc
Confidence 99999998 44457799999999999987 777889999999999984 3567899999999974 3567889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccC-cccCCCccceE
Q 012238 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAERIGAM 316 (467)
Q Consensus 238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RiG~~ 316 (467)
||||||.+++ +++|+++|++||+++|+|++|...... .+. ......+++.|++|. ++.+ ++|++
T Consensus 145 ~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~~~-------~~~~~d~~~~s~~K~l~g~~--g~g~~ 209 (416)
T 3isl_A 145 GETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGCE---VKV-------DEWKIDAAIGGTQKCLSVPS--GMAPI 209 (416)
T ss_dssp EETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTSC---CCT-------TTTTCSEEECCSSSTTCCCS--SEEEE
T ss_pred cCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCCC---cch-------hhcCCCEEEecCccccCCCC--CeEEE
Confidence 9999999998 557888899999999999997533221 111 111346889999997 4544 47998
Q ss_pred EEecCCHHHHhhhhhhhHHHHHHHHHhh--------------------------------------ccCccCCCchHHHH
Q 012238 317 NVVCSSSDLAARCCEVAVIQVKSQLKRL--------------------------------------ARPMYSNPPVHGAR 358 (467)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------~~~~~~~~~~~~~~ 358 (467)
+ .++++++. +... .......++...+.
T Consensus 210 ~---~~~~~~~~------------~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (416)
T 3isl_A 210 T---YNERVADV------------IAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY 274 (416)
T ss_dssp E---ECHHHHHH------------HHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred E---ECHHHHHH------------hhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence 5 67777765 3211 11112234555544
Q ss_pred HHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCc---ceEEec----CCCH-HHHHHHH
Q 012238 359 IVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQI---GMFSFT----GLNK-AQSDNMT 429 (467)
Q Consensus 359 ~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~---g~f~~~----~l~~-~~~~~ll 429 (467)
++..++.. +.+. +++.+++++++++++.+.|+ +.| +++..+.+ +.++++ +.+. ++.+.++
T Consensus 275 a~~~al~~------~~~~g~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 343 (416)
T 3isl_A 275 ALREGVRL------VLEEGLETRFERHRHHEAALAAGIK-AMG----LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLL 343 (416)
T ss_dssp HHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHH-HTT----CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHH-HcC----CEeccCccccCCcEEEEeCCCCCCHHHHHHHHH
Confidence 44444421 1233 67889999999999999999 766 45555543 334443 2344 4466666
Q ss_pred HcccEEEeCC------C--eEEec-cCChhh-HHHHHHHHHHHHHhc
Q 012238 430 NKWHVYMTKD------G--RISLA-GLSLAK-CEYLADAIIDSYHNV 466 (467)
Q Consensus 430 ~~~gI~v~~g------g--Ris~~-~~~~~~-i~~~~~~l~~~l~~~ 466 (467)
+++||.+.+| + ||++. ..++++ +++++++|+++++++
T Consensus 344 ~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 344 AQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred HhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 6669999875 2 99983 235556 999999999998764
No 124
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.95 E-value=2.7e-27 Score=240.08 Aligned_cols=343 Identities=12% Similarity=0.018 Sum_probs=202.0
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
.+.+||+.|.+.+.-+. .+|.+.+++.+.+... ..|.+..+..+.++++++++....+ .+.++|++ |+||++
T Consensus 29 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~gg~e 100 (430)
T 3i4j_A 29 RRYLDGSSGALVANIGH--GRAEVGERMAAQAARL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VSGGSE 100 (430)
T ss_dssp CEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ESSHHH
T ss_pred CEEEECCCchhccccCC--CCHHHHHHHHHHHHhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCcHHH
Confidence 47899998865333332 2678888888877542 2232223333344444444433222 22578999 999999
Q ss_pred HHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC---------------CeEEeeeecC-CCCCCChhhHH
Q 012238 163 SLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV---------------PWSEYRYYDP-KTVGLDFEGMI 220 (467)
Q Consensus 163 al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~---------------~~~~v~~~~~-~~~~~d~~~l~ 220 (467)
++.++.+++... .++|+|++.+|+|..+...+...+. .+..++..+. ..+..|++.|+
T Consensus 101 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 180 (430)
T 3i4j_A 101 ATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLR 180 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHH
Confidence 999984443322 4578999999999988765544433 2223332100 00123668899
Q ss_pred HHHHcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHH-hcCCeE
Q 012238 221 ADIKAAP-GGSFILLHGCAHN-PTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMEL 296 (467)
Q Consensus 221 ~~l~~~~-~~~~~i~i~~p~N-PTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~ 296 (467)
+.+++.. .++.+++++.++| ++|. .++.+++++|.++|++||+++|+||+|.+|...+. .... ... ...+++
T Consensus 181 ~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~-~~~~~~~~di 256 (430)
T 3i4j_A 181 ALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLAL-SRWSGVTPDI 256 (430)
T ss_dssp HHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG-GGTTTCCCSE
T ss_pred HHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhh-hhhcCCCCcE
Confidence 8887422 3455666666666 8887 66888899999999999999999999998865421 1111 111 112233
Q ss_pred EEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh----ccCccCCCchHHHHHHHHHhCChhhHH
Q 012238 297 LVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL----ARPMYSNPPVHGARIVANVVGNPALFD 371 (467)
Q Consensus 297 i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~L~~~~~~~ 371 (467)
.+|||.++ .| +|+||++ +++++++. +... ......+.+.+++.++..+|+...-
T Consensus 257 ---~t~sK~l~-~G~~r~G~~~---~~~~i~~~------------~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 315 (430)
T 3i4j_A 257 ---AVLGKGLA-AGYAPLAGLL---AAPQVYET------------VMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER-- 315 (430)
T ss_dssp ---EEECGGGT-TTSSCCEEEE---ECHHHHHH------------HHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH--
T ss_pred ---EEEccccc-CCccccEEEE---ECHHHHHH------------HhccCCcccccCCCCCCHHHHHHHHHHHHHHHc--
Confidence 36899999 59 9999995 78888877 6542 2223446777888887777652210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-C-------------HHHHHHHHHcccEEEe
Q 012238 372 EWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N-------------KAQSDNMTNKWHVYMT 437 (467)
Q Consensus 372 ~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~-------------~~~~~~ll~~~gI~v~ 437 (467)
++.++..++..+..++.+.+.+. .++. +....+.|. |+++.+ + .++.+.+++ +||.+.
T Consensus 316 --~~~~~~~~~~~~~~~~~l~~~~~-~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~ 387 (430)
T 3i4j_A 316 --EDLTGAAKERGAQLLAGLQALQA-RFPQ---MMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITY 387 (430)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHH-HCTT---EEEEEEETT-EEEEEEC------------CHHHHHHHHHH-TTEECC
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHH-hCCC---eEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEE
Confidence 11123333334444444444443 3321 344555555 444422 1 234556665 699999
Q ss_pred CC--------C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 438 KD--------G---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 438 ~g--------g---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
++ + ||+++ ..+++++++++++|+++++++
T Consensus 388 ~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 388 PGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp -----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 87 2 88876 348899999999999998764
No 125
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=1.6e-26 Score=233.76 Aligned_cols=330 Identities=10% Similarity=-0.006 Sum_probs=215.0
Q ss_pred CCcEEecCcccCCCCCCCCc-hHHHHHHHHHHHhcCCC---CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238 83 EKKLNLGVGAYRTEELQPYV-LDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~-~~~v~~a~~~~~~~~~~---~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (467)
...+|++.|.+.. ...+. +|.+.+++.+.+..... ..| +.....++++.+++++. ... +++|++ |+
T Consensus 42 ~~~lD~~~~~~~~--~lG~~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~----~~~-~~~v~~--~~ 111 (419)
T 2eo5_A 42 NKYLDFTSGIGVN--NLGWPSHPEVIKIGIEQMQKLAHAAANDF-YNIPQLELAKKLVTYSP----GNF-QKKVFF--SN 111 (419)
T ss_dssp CEEEESSGGGGTT--TTCBSCCHHHHHHHHHHHTTSCCCSCSCS-CCHHHHHHHHHHHHHSS----CSS-CEEEEE--ES
T ss_pred CEEEEccCChhhh--ccCCCCCHHHHHHHHHHHhhCcccccccc-CCHHHHHHHHHHHHhCC----CCc-CCEEEE--eC
Confidence 4689999887511 12222 68899999888754321 123 33445667777777742 222 568999 99
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhC-------------CCCeEEeeeecCC--CCC---------
Q 012238 159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDA-------------RVPWSEYRYYDPK--TVG--------- 213 (467)
Q Consensus 159 ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-~~~~~-------------G~~~~~v~~~~~~--~~~--------- 213 (467)
||++++.++.+++.. .+||+|++++|+|..+.. .+... +..++.+|..+.. .++
T Consensus 112 gg~ea~~~ai~~~~~-~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~ 190 (419)
T 2eo5_A 112 SGTEAIEASIKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSE 190 (419)
T ss_dssp SHHHHHHHHHHHHHT-TSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHH
T ss_pred chHHHHHHHHHHHHH-hhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchh
Confidence 999999998433211 148999999999975433 22222 1356677663211 112
Q ss_pred ---CChhhHH-HHHHcCC--CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238 214 ---LDFEGMI-ADIKAAP--GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV 286 (467)
Q Consensus 214 ---~d~~~l~-~~l~~~~--~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~ 286 (467)
+|++.++ +.+++.. +++++++++..|||||. +++.+++++|.++|++||+++|+||+|.+|...+. ....
T Consensus 191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~~~~ 267 (419)
T 2eo5_A 191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFAI 267 (419)
T ss_dssp HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG
T ss_pred hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---hhhH
Confidence 3688898 8887421 24455554434567896 67889999999999999999999999998865321 1111
Q ss_pred HHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhC
Q 012238 287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVG 365 (467)
Q Consensus 287 ~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 365 (467)
......++++ ||||.++ .| +|+||++ ++++++ . + ........+.+.+++.++..+|+
T Consensus 268 -~~~~~~~d~~---t~sK~~~-~G~~riG~~~---~~~~~~-~------------~-~~~~~~t~~~n~~~~~aa~aal~ 325 (419)
T 2eo5_A 268 -ENFNTVPDVI---TLAKALG-GGIMPIGATI---FRKDLD-F------------K-PGMHSNTFGGNALACAIGSKVID 325 (419)
T ss_dssp -GGGTCCCSEE---EECGGGG-TTTSCCEEEE---EEGGGC-C------------C-------CCCCCHHHHHHHHHHHH
T ss_pred -HhcCCCCCEE---Eeccccc-CCccceEEEE---EchHhh-c------------C-CcccCCCCCCCHHHHHHHHHHHH
Confidence 1112233433 7999999 59 9999996 566666 6 3 11112244567778878777764
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-C----HHHHHHHHHcccEEEeCCC
Q 012238 366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-N----KAQSDNMTNKWHVYMTKDG 440 (467)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-~----~~~~~~ll~~~gI~v~~gg 440 (467)
. +++..++++++++++.+.|+ ++ + ....+.| .|+|+.+ . .++.+.++ ++||.+.++|
T Consensus 326 ~----------~~~~~~~~~~~~~~l~~~L~-~~-~----~~~~~~g-~~~~i~~~~~~~~~~~~~~l~-~~Gv~v~~~~ 387 (419)
T 2eo5_A 326 I----------VKDLLPHVNEIGKIFAEELQ-GL-A----DDVRGIG-LAWGLEYNEKKVRDRIIGESF-KRGLLLLPAG 387 (419)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHT-TS-S----SEEEEET-TEEEEECSCHHHHHHHHHHHH-HTTEECEEET
T ss_pred H----------HHHHHHHHHHHHHHHHHHHH-Hh-h----hheEeee-EEEEEEEecCccHHHHHHHHH-HCCCEEecCC
Confidence 2 12277888899999999998 65 1 2334554 4656655 2 23455565 5699999874
Q ss_pred ----eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 441 ----RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 ----Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++ ..+++++++++++|+++++++
T Consensus 388 ~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 388 RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 88654 238899999999999998765
No 126
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=2.7e-26 Score=230.38 Aligned_cols=229 Identities=13% Similarity=0.076 Sum_probs=165.8
Q ss_pred EEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238 86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (467)
Q Consensus 86 i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (467)
-++++|.| |....+++.+.+.+++....+....+.|. +..+..++++.+++++.. + +.++ +.+|+++
T Consensus 23 ~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a 91 (398)
T 2rfv_A 23 STGALSTP-IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG-------E-AGLA--TASGISA 91 (398)
T ss_dssp TTCCSSCC-CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHH
T ss_pred CCCCcCCC-CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHH
Confidence 35778877 44444455666766665222221123443 567789999999999642 2 4444 5677899
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 164 LRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 164 l~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
+.++ +...+.+||+|+++.|+|..+...+ +..|++++.++. .|++.+++.++ ++++++++++|+
T Consensus 92 ~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~ 159 (398)
T 2rfv_A 92 ITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIRAAMR---PETKVVYIETPA 159 (398)
T ss_dssp HHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCC---TTEEEEEEESSB
T ss_pred HHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHhcC---CCCeEEEEECCC
Confidence 9997 4445679999999999999887776 788999988876 28899999887 578899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEE
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNV 318 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~ 318 (467)
||||.+++ +++|+++|+++|+++|+||+|..+.++. . . .. ..++++.|+||.++.+|+|+ ||++
T Consensus 160 nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~--~----~~-~~di~~~s~sK~~~~~g~~~~G~~~- 224 (398)
T 2rfv_A 160 NPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ----P--L----QL-GADIVVHSVTKYINGHGDVIGGIIV- 224 (398)
T ss_dssp TTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----G--G----GG-TCSEEEEETTTTTTCSSCCCCEEEE-
T ss_pred CCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----c--h----hh-CCcEEEEeCcccccCCCCceEEEEE-
Confidence 99999997 6688888999999999999998766531 1 1 11 35788999999999999999 9985
Q ss_pred ecCCHHHHh-hhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCC
Q 012238 319 VCSSSDLAA-RCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGN 366 (467)
Q Consensus 319 v~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~ 366 (467)
.++++++ . ++...... ..+.+.+.+.++...|+.
T Consensus 225 --~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (398)
T 2rfv_A 225 --GKQEFIDQA------------RFVGLKDITGGCMSPFNAWLTLRGVKT 260 (398)
T ss_dssp --ECHHHHHHH------------HHTHHHHTTCCCCCHHHHHHHHHHHTT
T ss_pred --ECHHHHHHH------------HHHHHHhCCCCCCCHHHHHHHHhhhhh
Confidence 6666665 3 33333222 345666777777777754
No 127
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.95 E-value=5.2e-26 Score=230.60 Aligned_cols=335 Identities=16% Similarity=0.066 Sum_probs=218.8
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.|||+.|.+...-|. .+|.+.+++.+.+...... |.+.....+|++++++++.+ .+++++ ++||+
T Consensus 52 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~-------~~~v~~--~~~Gs 119 (429)
T 3k28_A 52 GNEYIDYVLSWGPLIHGH--ANDRVVEALKAVAERGTSF-GAPTEIENKLAKLVIERVPS-------IEIVRM--VNSGT 119 (429)
T ss_dssp CCEEEESCGGGTTCTTCB--SCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHSTT-------CSEEEE--ESSHH
T ss_pred CCEEEECCCChhhcccCC--CCHHHHHHHHHHHhhCcCc-CCCCHHHHHHHHHHHHhCCC-------CCEEEE--eCChH
Confidence 457999999876333333 3788999998887654333 44777888999999998531 578999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeeeecCCCCC------------CChhhHHHHHHcCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVG------------LDFEGMIADIKAAPG 228 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~------------~d~~~l~~~l~~~~~ 228 (467)
+++..+..+.....++++|++.+|+|..+...+. ..|..+..++........ .|++.+++.+++.++
T Consensus 120 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (429)
T 3k28_A 120 EATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD 199 (429)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence 9999985443333467899999999976544332 233322222221011100 189999999875434
Q ss_pred CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 229 GSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
++.++++..++|++|.+. +.+++++|.++|++||+++|+||+|.+| ..+ ..... .......+ +.+|||.++
T Consensus 200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~-~~~~~~~d---i~t~sK~~~ 271 (429)
T 3k28_A 200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQ-GYYGVTPD---LTCLGKVIG 271 (429)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHH-HHHTCCCS---EEEECGGGG
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHH-HHhCCCCc---eehhhhhhc
Confidence 556666665556666655 5788999999999999999999999988 332 11122 22222233 347899998
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 384 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~ 384 (467)
.|+|+||++ +++++++. +.... .....+.+.+++.++..+|+... ++..+++
T Consensus 272 -~G~~iG~~~---~~~~~~~~------------~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---------~~~~~~~ 326 (429)
T 3k28_A 272 -GGLPVGAYG---GKAEIMRQ------------VAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---------PESYVEF 326 (429)
T ss_dssp -TTSCCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---------HHHHHHH
T ss_pred -CCCCeEEEE---EcHHHHhh------------hccCCCccccCCCCCChHHHHHHHHHHHHHH---------HHHHHHH
Confidence 599999995 77888776 44321 22234677788888877776432 2445555
Q ss_pred HHHHHHHHHHhhhcc----CCCCCcccccCCcceEEec--CC-----------C----HHHHHHHHHcccEEEeCCC---
Q 012238 385 KNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFT--GL-----------N----KAQSDNMTNKWHVYMTKDG--- 440 (467)
Q Consensus 385 ~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~--~l-----------~----~~~~~~ll~~~gI~v~~gg--- 440 (467)
+++++++.+.|+ ++ +. +....+.|.++.|. +. + .++.+.+++ +||.+.++|
T Consensus 327 ~~~~~~l~~~L~-~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~ 401 (429)
T 3k28_A 327 ERKAEMLEAGLR-KAAEKHGI---PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQFEG 401 (429)
T ss_dssp HHHHHHHHHHHH-HHHHHTTC---CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTTSC
T ss_pred HHHHHHHHHHHH-HHHhhCCC---CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCCCCC
Confidence 666666666665 43 32 22344555544332 10 1 334556665 599999975
Q ss_pred -eEEeccCChhhHHHHHHHHHHHHHhcC
Q 012238 441 -RISLAGLSLAKCEYLADAIIDSYHNVS 467 (467)
Q Consensus 441 -Ris~~~~~~~~i~~~~~~l~~~l~~~~ 467 (467)
|+++.. +++++++++++|++++++++
T Consensus 402 ~r~~~~~-t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 402 LFLSTVH-SDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp BCCCTTC-CHHHHHHHHHHHHHHHHTCC
T ss_pred EEEECCC-CHHHHHHHHHHHHHHHHHHh
Confidence 887765 89999999999999998753
No 128
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=1.2e-26 Score=233.22 Aligned_cols=324 Identities=15% Similarity=0.148 Sum_probs=215.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCc---chHH--HH-----HHHHHHHhCCCCcccccCce
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---GLAA--FN-----KVTAELLFGADNSVLKEQRV 152 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~---G~~~--lr-----~aia~~l~~~~~~~~~~~~i 152 (467)
.+.|+|+.|.+ +. ++.+.+++.+.+.......|+... |.+. ++ +.+++++... +++|
T Consensus 23 ~~~i~~~~~~~------~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~------~~~i 89 (407)
T 2dkj_A 23 REGLELIASEN------FV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA------WANV 89 (407)
T ss_dssp HTSEECCTTCC------CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEEC
T ss_pred hcceeeccCCC------CC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC------cceE
Confidence 37899998875 23 788999998877542234564332 4332 33 3666765322 4456
Q ss_pred eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch---HHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCC
Q 012238 153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH---KNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPG 228 (467)
Q Consensus 153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~ 228 (467)
++ ++ |++++.++ +...+.+||+|++++|+|..+ ...++..|..+..+++. +++++.+|++.+++.+++ .
T Consensus 90 ~~--~s-Gt~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~ 162 (407)
T 2dkj_A 90 QP--HS-GSQANMAV--YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE--H 162 (407)
T ss_dssp CC--SS-HHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH--H
T ss_pred Ee--cc-hHHHHHHH--HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh--c
Confidence 55 55 56699987 333467999999999999888 34555666655555553 234678999999999973 2
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
+++++++++|+|| ...+ +++|.++|++||+++|+||+|.. +.+.+.... .. + ..++++.|+||.
T Consensus 163 ~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~----~--~~di~~~s~sK~-- 227 (407)
T 2dkj_A 163 RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PL----P--YAHVVTSTTHKT-- 227 (407)
T ss_dssp CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CT----T--TCSEEEEESSGG--
T ss_pred CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCC--cc----c--cccEEEEecccc--
Confidence 4567777999998 4555 67888889999999999999986 443221110 00 1 246889999994
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 386 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~ 386 (467)
++|+|+||++ +.++++++. +......... .++.....++..+|... ....+++.++++++
T Consensus 228 l~g~~~G~~~--~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~ 288 (407)
T 2dkj_A 228 LRGPRGGLIL--SNDPELGKR------------IDKLIFPGIQGGPLEHVIAGKAVAFFEA-----LQPEFKEYSRLVVE 288 (407)
T ss_dssp GCCCSCEEEE--ESCHHHHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHHH-----HSHHHHHHHHHHHH
T ss_pred CCCCCceEEE--ECCHHHHHH------------HHhhhcccccCCCcHHHHHHHHHHHHHH-----HHhhHHHHHHHHHH
Confidence 5689999996 333777776 4443333322 33332222333333211 02346788899999
Q ss_pred HHHHHHHHhhhccCCCCCccccc-CCcceEEecCC-----CHHHHHHHHHcccEEEeCC------------C--eEEecc
Q 012238 387 VRQKLFDSLSAKDKSGKDWSFIL-RQIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------------G--RISLAG 446 (467)
Q Consensus 387 ~r~~l~~~l~~~~g~~~~~~~~~-~~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------------g--Ris~~~ 446 (467)
+++++.+.|+ ++| +++.. +..+.|+|+.+ +.+.+.+.+.++||.+.+| + ||+++.
T Consensus 289 ~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~ 363 (407)
T 2dkj_A 289 NAKRLAEELA-RRG----YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPA 363 (407)
T ss_dssp HHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHH
T ss_pred HHHHHHHHHH-hCC----ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeeccc
Confidence 9999999999 776 45553 34566777643 4444444556679998863 1 999863
Q ss_pred -----CChhhHHHHHHHHHHHHHh
Q 012238 447 -----LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 447 -----~~~~~i~~~~~~l~~~l~~ 465 (467)
.+++++++++++|++++++
T Consensus 364 ~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 364 ITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhc
Confidence 4889999999999998865
No 129
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.95 E-value=2.7e-26 Score=232.63 Aligned_cols=338 Identities=9% Similarity=-0.012 Sum_probs=219.4
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC---CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~---~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
...+|++.+.+.+.-+. .+|.+.+++.+.+..... ..| +.....++++.+++++.. ++++|++ |+|
T Consensus 43 ~~ylD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~g 111 (429)
T 1s0a_A 43 RRLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMSHVMFGGI-THAPAIELCRKLVAMTPQ------PLECVFL--ADS 111 (429)
T ss_dssp CEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHHCSCCCCSSE-ECHHHHHHHHHHHHHSCT------TCCEEEE--ESS
T ss_pred CEEEEcCccHhhccCCC--CCHHHHHHHHHHHHhccccccccc-CCHHHHHHHHHHHHhCCC------CCCEEEE--eCC
Confidence 46889988875222222 378899999888754321 234 334457788888888532 3679999 999
Q ss_pred chhHHHHHHHHHHHh-C----CCCEEEEcCCCCcchHHHH-hhCC-------------CCeEEeeeec---CCCC-CCCh
Q 012238 160 GTGSLRLAAALIERY-F----PGAKVLISSPTWGNHKNIF-NDAR-------------VPWSEYRYYD---PKTV-GLDF 216 (467)
Q Consensus 160 gt~al~l~~~~l~~~-~----~gd~Vlv~~P~y~~~~~~~-~~~G-------------~~~~~v~~~~---~~~~-~~d~ 216 (467)
|+++++++.+.+..+ . |||+|+++.|+|..+.... ...| ..+..++... +..+ .+|+
T Consensus 112 gtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 191 (429)
T 1s0a_A 112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH
Confidence 999999984433221 2 5899999999998764432 2222 1344455421 1123 4899
Q ss_pred hhHHHHHHcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCC
Q 012238 217 EGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294 (467)
Q Consensus 217 ~~l~~~l~~~~~~~~~i~i~~p-~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (467)
+.+++.+++.++++++++++.. |||||. .++.+++++|+++|++||+++|+||+|.+|...+. .... .......
T Consensus 192 ~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~-~~~~~~~ 267 (429)
T 1s0a_A 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFAC-EHAEIAP 267 (429)
T ss_dssp HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG-GGGTCCC
T ss_pred HHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHh-hhcCCCC
Confidence 9999998743235556655444 699996 55788899999999999999999999988754321 1111 1112223
Q ss_pred eEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh-----ccCccCCCchHHHHHHHHHhCChh
Q 012238 295 ELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL-----ARPMYSNPPVHGARIVANVVGNPA 368 (467)
Q Consensus 295 ~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~L~~~~ 368 (467)
+++ ||||.++ +| +|+||++ .++++++. +... ......+.+.+++.++..+|+..
T Consensus 268 d~~---t~sK~l~-~G~~~iG~~~---~~~~~~~~------------l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~- 327 (429)
T 1s0a_A 268 DIL---CLGKALT-GGTMTLSATL---TTREVAET------------ISNGEAGCFMHGPTFMGNPLACAAANASLAIL- 327 (429)
T ss_dssp SEE---EECGGGG-TSSSCCEEEE---ECHHHHHH------------HHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH-
T ss_pred CEE---Eeccccc-CCCccceEEE---eCHHHHHH------------hhcCCCcccccCCCCCCCHHHHHHHHHHHHHH-
Confidence 433 7899998 68 9999996 67777776 5442 12223456777777776665321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCCC--
Q 012238 369 LFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG-- 440 (467)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg-- 440 (467)
.+ +...++++++++++.+.|+ +++ .|. +....+.+ .|+|+.+ +. ++.+.+++ +||.+.+++
T Consensus 328 -----~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-~~~~~~~g-~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~ 396 (429)
T 1s0a_A 328 -----ES--GDWQQQVADIEVQLREQLA-PARDAEM-VADVRVLG-AIGVVETTHPVNMAALQKFFVE-QGVWIRPFGKL 396 (429)
T ss_dssp -----HT--CHHHHHHHHHHHHHHHHHG-GGGGCTT-EEEEEEET-TEEEEEESSCBCHHHHHHHHHH-TTEECCCBTTE
T ss_pred -----Hh--CCHHHHHHHHHHHHHHHHH-HHhcCCC-EEEEEEee-EEEEEEECCcccHHHHHHHHHH-CCCEEeccCCE
Confidence 11 1345667778888888888 652 222 33334444 4666533 34 34556664 699999865
Q ss_pred -eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 441 -RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 -Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++ ..+++++++++++|+++++++
T Consensus 397 iRis~~~~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 397 IYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 88854 238899999999999987654
No 130
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.95 E-value=6.7e-27 Score=237.82 Aligned_cols=340 Identities=11% Similarity=-0.030 Sum_probs=212.4
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.+||+.|.+...-+. .+|.+.+++.+.+... ..|....|..++++++++++....+... ++++++ |+||+
T Consensus 42 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~--~~ggs 114 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGY--GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPGEG-THKIWF--GHSGS 114 (439)
T ss_dssp SCEEEESSTTTTTCTTCB--SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTCTT-TEEEEE--ESSHH
T ss_pred CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCCCC-CCEEEE--eCCHH
Confidence 347899999987333332 3788999998887653 3344344555566666666554432211 168988 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-CCCe--------------EEeeeecCCCCCC-----ChhhHHH
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RVPW--------------SEYRYYDPKTVGL-----DFEGMIA 221 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~~~--------------~~v~~~~~~~~~~-----d~~~l~~ 221 (467)
+++..+.++...+.++++|++.+|+|..+....... |... ..++.. ..+.. |++.|++
T Consensus 115 ea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~ 192 (439)
T 3dxv_A 115 DANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRNDPTGDAILTLLTE 192 (439)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTBTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--cccccccHHHHHHHHHH
Confidence 999998443322456789999999996654444333 3221 222221 11111 6899999
Q ss_pred HHH-cCCCCcEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238 222 DIK-AAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (467)
Q Consensus 222 ~l~-~~~~~~~~i~i~~p~NPTG~~~~~-~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (467)
.++ ..+++++++++++++|++|.+.+. +.+++|.++|++||+++|+||+|.+|...+. .... .......+++
T Consensus 193 ~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~-~~~~~~~di~-- 266 (439)
T 3dxv_A 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCF-EHEGFVPDIL-- 266 (439)
T ss_dssp HHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGG-GGTTCCCSEE--
T ss_pred HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHH-HhcCCCCCEE--
Confidence 994 223567888888888898887654 4499999999999999999999998754321 1111 1112223433
Q ss_pred ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM 379 (467)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~ 379 (467)
||||.++ +|+|+||++ +++++++. +......... .+.+++.++..+|+... + +.
T Consensus 267 -s~sK~~~-~G~riG~~~---~~~~~~~~------------~~~~~~~~t~-~~~~~~~aa~aal~~~~------~--~~ 320 (439)
T 3dxv_A 267 -VLGKGLG-GGLPLSAVI---APAEILDC------------ASAFAMQTLH-GNPISAAAGLAVLETID------R--DD 320 (439)
T ss_dssp -EECGGGG-TTSCCEEEE---EEHHHHTS------------CSSSSCCTTT-TCHHHHHHHHHHHHHHH------H--TT
T ss_pred -EEcchhc-CCcceEEEE---ECHHHHhh------------hcCCCcCCCc-ccHHHHHHHHHHHHHHH------h--cC
Confidence 9999999 699999995 77887776 5443323334 66777777766654211 0 23
Q ss_pred HHHHHHHHHHHHHHHhhhccC--CCCCcccccCCcceEEecCC-------------CHHHHHHHHHcccEEEeCCC----
Q 012238 380 MAGRIKNVRQKLFDSLSAKDK--SGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKDG---- 440 (467)
Q Consensus 380 ~~~~~~~~r~~l~~~l~~~~g--~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~gg---- 440 (467)
..++++++++++.+.|+ ++. .+. +....+.|. |+|+.+ ..++.+.+++ +||.+.++|
T Consensus 321 ~~~~~~~~~~~~~~~l~-~~~~~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~ 396 (439)
T 3dxv_A 321 LPAMAERKGRLLRDGLS-ELAKRHPL-IGDIRGRGL-ACGMELVCDRQSREPARAETAKLIYRAYQ-LGLVVYYVGMNGN 396 (439)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCTT-EEEEEEETT-EEEEEEEEETTTTEECHHHHHHHHHHHHH-HTEECEEESTTSC
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhCCC-eEEEEEEEE-EEEEEEecCccccCCCHHHHHHHHHHHHH-CCcEEeecCCCCC
Confidence 34444455555555554 321 111 333445544 544422 1234566665 499999874
Q ss_pred --eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 441 --RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 --Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++. .+++++++++++|+++++++
T Consensus 397 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 397 VLEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 776542 37899999999999998765
No 131
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=7.3e-28 Score=241.54 Aligned_cols=309 Identities=13% Similarity=0.053 Sum_probs=191.8
Q ss_pred CchHHHHHHHHHHHhcC---CCCcCC----CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH
Q 012238 101 YVLDVVKKAENLMLERG---ENKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173 (467)
Q Consensus 101 ~~~~~v~~a~~~~~~~~---~~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~ 173 (467)
++++.+.+++.+.+... ....|. ......++++.+++++... +++|++ |+|+++++.++. ...
T Consensus 31 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~------~~~v~~--~~g~t~al~~~~--~~l 100 (400)
T 3vax_A 31 RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE------PDELIF--TSGATESNNIAL--LGL 100 (400)
T ss_dssp SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC------GGGEEE--ESCHHHHHHHHH--HTT
T ss_pred CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC------CCcEEE--eCCHHHHHHHHH--HHH
Confidence 44788888888876421 101121 1234678888888886432 678999 999999999983 333
Q ss_pred h----CCCC-EEEEcCCCCcchHHHHh---hCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012238 174 Y----FPGA-KVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID 245 (467)
Q Consensus 174 ~----~~gd-~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~ 245 (467)
. .+|| +|+++.++|+.+...+. ..|++++.++.+ .++.+|++.+++.++ ++++++++++||||||.+
T Consensus 101 ~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~ 175 (400)
T 3vax_A 101 APYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG--PSGRISVEGVMERLR---PDTLLVSLMHVNNETGVI 175 (400)
T ss_dssp HHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCC--TTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBB
T ss_pred HHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccC--CCCCcCHHHHHHhcC---CCceEEEEECCCCCceee
Confidence 3 6899 99999999988766554 469999999984 367799999999887 578999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHH
Q 012238 246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL 325 (467)
Q Consensus 246 ~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~ 325 (467)
++. ++|+++|+++|+++|+|++|..... ...+ ... ..+++.|+||.+|++|+ |++++ +.++++
T Consensus 176 ~~l---~~i~~la~~~~~~li~D~a~~~~~~------~~~~----~~~-~d~~~~s~~K~~g~~g~--g~~~~-~~~~~~ 238 (400)
T 3vax_A 176 QPV---AELAQQLRATPTYLHVDAAQGYGKV------PGDL----TTP-IDMISISGHKIGAPKGV--GALVT-RRREEM 238 (400)
T ss_dssp CCH---HHHHHHHTTSSCEEEEECTTTTTTS------GGGG----GSC-CSEEEEETGGGTSCSSC--EEEEE-CBCSSS
T ss_pred CcH---HHHHHHHHhcCCEEEEEhhhhcCCC------CcCh----hhc-CcEEEEeHHHhCCCCce--EEEEE-ecchhc
Confidence 985 5777789999999999999863221 1111 112 45889999998887664 55530 133211
Q ss_pred H---hhhhhhhHHHHHHHHHhhc-------cCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238 326 A---ARCCEVAVIQVKSQLKRLA-------RPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL 395 (467)
Q Consensus 326 ~---~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l 395 (467)
. .. +.... ......++...+.++..++.. +.+.+++.+++++++++++.+.|
T Consensus 239 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~------~~~~~~~~~~~~~~~~~~l~~~L 300 (400)
T 3vax_A 239 DDERVP------------LEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI------FEAEHAQWQVAAQDLRSRLLAGL 300 (400)
T ss_dssp TTCBCC------------CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH------HHHSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc------------cCceecCCCceeeeecCCCCHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHhh
Confidence 1 11 11110 111223444444444444421 12346788899999999999999
Q ss_pred hhccCCCCCcccccCCc----ceEEec--CCCHHHHHHHHHcccEEEeCC-------------------------C--eE
Q 012238 396 SAKDKSGKDWSFILRQI----GMFSFT--GLNKAQSDNMTNKWHVYMTKD-------------------------G--RI 442 (467)
Q Consensus 396 ~~~~g~~~~~~~~~~~~----g~f~~~--~l~~~~~~~ll~~~gI~v~~g-------------------------g--Ri 442 (467)
+ ..+ +.+..+.+ +++.+. +.+.+.+.+.+. +||.+.+| + ||
T Consensus 301 ~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl 374 (400)
T 3vax_A 301 A-STS----FQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRF 374 (400)
T ss_dssp T-TTT----CEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEE
T ss_pred C-CCC----EEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEE
Confidence 7 544 45555543 333221 345555444455 69988774 4 99
Q ss_pred Ee-cc-CChhhHHHHHHHHHHHHHh
Q 012238 443 SL-AG-LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 443 s~-~~-~~~~~i~~~~~~l~~~l~~ 465 (467)
++ +. .+++++++++++|++++++
T Consensus 375 s~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 375 SWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEEEC--------------------
T ss_pred EccCCCCCHHHHHHHHHHHHHHhcc
Confidence 99 53 3678999999999998764
No 132
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.95 E-value=1.2e-26 Score=234.63 Aligned_cols=327 Identities=14% Similarity=0.077 Sum_probs=216.3
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+...|||+.|..-+.-+. .+|.+.+++.+.++.... ..| +.....++++.+++++ + .+++++ ++|
T Consensus 56 g~~~lD~~~~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~g 122 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGH--CHPALVEALKSQGETLWHTSNVF-TNEPALRLGRKLIDAT----F----AERVLF--MNS 122 (420)
T ss_dssp CCEEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCCCCCTTS-CCHHHHHHHHHHHHHS----S----CSEEEE--ESS
T ss_pred CCEEEEccccccccccCC--CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC----C----CCeEEE--eCC
Confidence 347899998853222233 368899999888754221 123 3445567777777764 2 468988 999
Q ss_pred chhHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchH-HHHhhCCCC------------eEEeeeecCCCCCCChhhHH
Q 012238 160 GTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHK-NIFNDARVP------------WSEYRYYDPKTVGLDFEGMI 220 (467)
Q Consensus 160 gt~al~l~~~~l~~~~-----~g-d~Vlv~~P~y~~~~-~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~ 220 (467)
|++|++++..++.... +| ++|++++|+|..+. ..+...|.+ +..++. .|++.++
T Consensus 123 gteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le 195 (420)
T 2pb2_A 123 GTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVK 195 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHH
Confidence 9999999844332210 67 49999999997664 344555543 333332 3899999
Q ss_pred HHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238 221 ADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (467)
Q Consensus 221 ~~l~~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (467)
+.++ ++++++++++++||+|. +++.+++++|.++|++||+++|+||+|.++...+ ..... .......+++
T Consensus 196 ~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g---~~~~~-~~~~~~~dii-- 266 (420)
T 2pb2_A 196 AVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---DLFAY-MHYGVTPDIL-- 266 (420)
T ss_dssp HHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHH-HHHTCCCSEE--
T ss_pred HHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCC---cHHHH-HhcCCCCCeE--
Confidence 9887 57888888888888884 6999999999999999999999999998876532 11222 1223334544
Q ss_pred ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM 379 (467)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~ 379 (467)
||||.++ +|+|+||++ .++++++. +.........+.+.+++.++..+|+... + +.
T Consensus 267 -t~sK~l~-~G~~iG~~~---~~~~l~~~------------l~~~~~~~t~~~~~~~~aa~~a~L~~~~------~--~~ 321 (420)
T 2pb2_A 267 -TSAKALG-GGFPVSAML---TTQEIASA------------FHVGSHGSTYGGNPLACAVAGAAFDIIN------T--PE 321 (420)
T ss_dssp -EECGGGG-TTSCCEEEE---ECHHHHTT------------CC----CCEECCCHHHHHHHHHHHHHHS------S--HH
T ss_pred -Eeccccc-CCCceEEEE---EhHHHHHh------------hcCCCcCcccCcCHHHHHHHHHHHHHHH------h--cc
Confidence 7899999 899999996 56667666 4332222234567777777766653211 0 24
Q ss_pred HHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCCC----eEEec-
Q 012238 380 MAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA- 445 (467)
Q Consensus 380 ~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~- 445 (467)
..++++++++++.+.|+ ++ ++|. +....+.|. |+++.+ +. ++.+.+++ +||.+.++| ||++.
T Consensus 322 ~~~~~~~~~~~l~~~L~-~~~~~~~~-~~~~~~~g~-~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~~~iRl~~~~ 397 (420)
T 2pb2_A 322 VLQGIHTKRQQFVQHLQ-AIDEQFDI-FSDIRGMGL-LIGAELKPKYKGRARDFLYAGAE-AGVMVLNAGADVMRFAPSL 397 (420)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHCC-EEEEEEETT-EEEEEECGGGTTCHHHHHHHHHH-TTEECEESSTTEEEECCCT
T ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCC-eEEEEecce-EEEEEECCCchHHHHHHHHHHHH-CCCEEEeCCCCEEEEECCC
Confidence 55667777777877777 54 2221 222344444 555432 23 34556665 699999874 88854
Q ss_pred cCChhhHHHHHHHHHHHHHhc
Q 012238 446 GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 446 ~~~~~~i~~~~~~l~~~l~~~ 466 (467)
..+++++++++++|+++++++
T Consensus 398 ~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 398 VVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 348899999999999998764
No 133
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=4.3e-26 Score=233.61 Aligned_cols=339 Identities=12% Similarity=0.065 Sum_probs=218.6
Q ss_pred CCcEEecCccc-CCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 83 EKKLNLGVGAY-RTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 83 ~~~i~l~~G~~-~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
.++++|+.|.. .|...... .+.+.+++.+.+..+. ..|.+..+..+||+++++++.. +++++ |+||+
T Consensus 34 ~~~~~~~~g~~ylD~~~~~~-~~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~ggt 101 (467)
T 1ax4_A 34 YNPFLLPSSAVYIDLLTDSG-TNAMSDHQWAAMITGD-EAYAGSRNYYDLKDKAKELFNY--------DYIIP--AHQGR 101 (467)
T ss_dssp SCGGGSCGGGCSEECSCSSS-CCCEEHHHHHHHHTCC-CCSSSCHHHHHHHHHHHHHHCC--------CEEEE--ESSHH
T ss_pred cCcccCCCCceeeecccCcC-CHHHHHHHHHHHhhcc-cccccCccHHHHHHHHHHHcCC--------CcEEE--cCCcH
Confidence 45677777653 23211111 2556666666554443 5788888999999999999742 47888 99999
Q ss_pred hHHHHHHHHHHHhC----CCCE---EEEcCCCCcchHHHHhhCCCCeEEeeeec--------CCCCCCChhhHHHHHHcC
Q 012238 162 GSLRLAAALIERYF----PGAK---VLISSPTWGNHKNIFNDARVPWSEYRYYD--------PKTVGLDFEGMIADIKAA 226 (467)
Q Consensus 162 ~al~l~~~~l~~~~----~gd~---Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~--------~~~~~~d~~~l~~~l~~~ 226 (467)
+|+.++. ..... +||+ |+++.+.|..+...++..|.+++.++... +.++.+|++.|++.+++.
T Consensus 102 ~A~~~al--~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~ 179 (467)
T 1ax4_A 102 GAENILF--PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQH 179 (467)
T ss_dssp HHHHHHH--HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhc
Confidence 9999983 33455 8998 99998888888888899999888776431 124568999999999742
Q ss_pred C-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC--C--------CCCCCCCChhHHH-HHHhcC
Q 012238 227 P-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG--F--------ASGSLDNDASSVR-LFATRG 293 (467)
Q Consensus 227 ~-~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~--~--------~~~~~~~~~~~~~-~~~~~~ 293 (467)
. .+++++++++||||| |.+++.+++++|+++|++||+++|+|+++.. . .+.+ .+...+. ......
T Consensus 180 ~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 257 (467)
T 1ax4_A 180 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYKYA 257 (467)
T ss_dssp CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGGGC
T ss_pred CCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC--Cchhhhhhhhcccc
Confidence 1 267899999999999 8999999999999999999999999998432 0 1211 1111110 000122
Q ss_pred CeEEEEecCccCcccCCCccc-eEEEecCCH-HHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhH
Q 012238 294 MELLVAQSYSKNLGLYAERIG-AMNVVCSSS-DLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALF 370 (467)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG-~~~~v~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~ 370 (467)
+ +++.|+||.++++ +| |++ ..++ ++++. +.......... .+...+.....++...+... .
T Consensus 258 -d-~~~~s~sK~~g~~---~Gg~~~--~~d~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~- 320 (467)
T 1ax4_A 258 -D-ALTMSAKKDPLLN---IGGLVA--IRDNEEIFTL--------ARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG-T- 320 (467)
T ss_dssp -S-EEEEETTSTTCCS---SCEEEE--ESSCHHHHHH--------HHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT-T-
T ss_pred -c-eEEEeccccCCCC---cceEEE--eCCHHHHHHH--------HHhhccccccccccCCccchHHHHHHHHHHHh-h-
Confidence 2 4568999999865 44 443 3436 77766 32211111111 12222332222222122210 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC-------CC------HHHHHHHHHcccEEEe
Q 012238 371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG-------LN------KAQSDNMTNKWHVYMT 437 (467)
Q Consensus 371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~-------l~------~~~~~~ll~~~gI~v~ 437 (467)
+ ++..++..++++.+.+.|+ +.+ +.+..+.+|+++|++ +. .++++++++++||.+.
T Consensus 321 ----~--~~~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 389 (467)
T 1ax4_A 321 ----E--EEYLHYRIGQVKYLGDRLR-EAG----IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV 389 (467)
T ss_dssp ----C--HHHHHHHHHHHHHHHHHHH-HTT----CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECE
T ss_pred ----h--hhHHHHHHHHHHHHHHHHH-hCC----CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceee
Confidence 0 0112222356678888888 654 456677888888876 32 2345666467799987
Q ss_pred C------------C-------C--eEEecc--CChhhHHHHHHHHHHHHHh
Q 012238 438 K------------D-------G--RISLAG--LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 438 ~------------g-------g--Ris~~~--~~~~~i~~~~~~l~~~l~~ 465 (467)
+ | + ||+++. .+++++++++++|++++++
T Consensus 390 ~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 390 EIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp EESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred ecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 6 2 3 899872 4789999999999988765
No 134
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.95 E-value=4e-26 Score=229.17 Aligned_cols=312 Identities=16% Similarity=0.078 Sum_probs=217.5
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (467)
+.|||+.|.+ . . ++.+.+++.+.+.. ..|.+..+..++|+++++++... ++++ +.+|+++
T Consensus 31 ~~id~~~~~~----~--~-~~~v~~a~~~~~~~---~~y~~~~~~~~l~~~la~~~~~~--------~~v~--~~~Gt~a 90 (399)
T 2oga_A 31 PFLDLKAAYE----E--L-RAETDAAIARVLDS---GRYLLGPELEGFEAEFAAYCETD--------HAVG--VNSGMDA 90 (399)
T ss_dssp CSCCHHHHHH----H--T-HHHHHHHHHHHHHH---TCCSSSHHHHHHHHHHHHHTTSS--------EEEE--ESCHHHH
T ss_pred cccccCcCCC----C--C-CHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHCCC--------eEEE--ecCHHHH
Confidence 6899999876 2 2 47888888888754 25767788999999999996431 4555 6888999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238 164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (467)
Q Consensus 164 l~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 242 (467)
+.++ +... +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++ +++++++ ++|||
T Consensus 91 ~~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~n~t 161 (399)
T 2oga_A 91 LQLA--LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPH-EDHPTLDPLLVEKAIT---PRTRALL---PVHLY 161 (399)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-SSSSSBCHHHHHHHCC---TTEEEEC---CBCGG
T ss_pred HHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecC-CCCCCcCHHHHHHhcC---CCCeEEE---EeCCc
Confidence 9997 3334 5699999999999999999999999999999985 3357899999999987 4666666 57999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEec
Q 012238 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVC 320 (467)
Q Consensus 243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~ 320 (467)
|...+ +++|.++|+++|+++|+||+|..+...+ ... . .. ...+++.|+ ||.++.+| |.||++ +
T Consensus 162 G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~--~~~--~----~~-~~di~~~S~~~sK~~~~~G-~~g~~~--~ 226 (399)
T 2oga_A 162 GHPAD---MDALRELADRHGLHIVEDAAQAHGARYR--GRR--I----GA-GSSVAAFSFYPGKNLGCFG-DGGAVV--T 226 (399)
T ss_dssp GCCCC---HHHHHHHHHHHTCEECEECTTCTTCEET--TEE--T----TC-TTCEEEEECCTTSSSCCSS-CCEEEE--E
T ss_pred CCccC---HHHHHHHHHHcCCEEEEECcccccCccC--Cee--c----cc-ccCEEEEeCCCCccCCcCC-ceEEEE--e
Confidence 99877 5577778999999999999997653211 111 1 10 124788888 79999889 999985 4
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhccCc------------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLARPM------------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 388 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r 388 (467)
.++++++. ++...... ....+.+.+.++...++. ++...++.++++
T Consensus 227 ~~~~~~~~------------l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~----------~~~~~~~~~~~~ 284 (399)
T 2oga_A 227 GDPELAER------------LRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH----------LDSWNGRRSALA 284 (399)
T ss_dssp SCHHHHHH------------HHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT----------HHHHHHHHHHHH
T ss_pred CCHHHHHH------------HHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 56787776 43322211 113445554444444321 233445556667
Q ss_pred HHHHHHhhhcc-CCCCCcccc-cCCcceEEec-----CCCHHHHHHHHHcccEEEeCC----------------------
Q 012238 389 QKLFDSLSAKD-KSGKDWSFI-LRQIGMFSFT-----GLNKAQSDNMTNKWHVYMTKD---------------------- 439 (467)
Q Consensus 389 ~~l~~~l~~~~-g~~~~~~~~-~~~~g~f~~~-----~l~~~~~~~ll~~~gI~v~~g---------------------- 439 (467)
+++.+.|+ ++ + +++. .+.++.++|. ..+.+.+.+.|.++||.+.++
T Consensus 285 ~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p 359 (399)
T 2oga_A 285 AEYLSGLA-GLPG----IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLP 359 (399)
T ss_dssp HHHHHHTT-TCTT----CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCH
T ss_pred HHHHHHhc-cCCC----ccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCCh
Confidence 78888887 65 3 3332 2444555542 224444444444569988652
Q ss_pred -------C--eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 440 -------G--RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 -------g--Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||++.. .+++++++++++|+++++++
T Consensus 360 ~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 360 RAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp HHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 666642 37899999999999998865
No 135
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.95 E-value=5.8e-26 Score=230.09 Aligned_cols=329 Identities=12% Similarity=0.021 Sum_probs=210.4
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.|||+.|.+...-+. .+|.+.+++.+.++......| +.....++.+.+++++. .+++|++ ++||+
T Consensus 51 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-------~~~~v~~--~~ggs 118 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGH--AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP-------SIEMVRF--VNSGT 118 (427)
T ss_dssp SCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-------TCSEEEE--ESSHH
T ss_pred CCEEEECCCchhhhccCC--CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHH
Confidence 357899999976333333 378899999888865433334 44455566666666632 2678999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC--------------------eEEeeeecCCCCCCChhhHHH
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP--------------------WSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~--------------------~~~v~~~~~~~~~~d~~~l~~ 221 (467)
+++.++..+......+++|++..|+|..+...+...+.. +..++. .|++.+++
T Consensus 119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~ 191 (427)
T 3fq8_A 119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKA 191 (427)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHH
Confidence 999998543333445689999999997654433222111 122221 18999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238 222 DIKAAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (467)
Q Consensus 222 ~l~~~~~~~~~i~i~~p~NPTG~~~~-~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (467)
.+++.+.++++++++.++|++|.+.+ .+.+++|.++|++||+++|+||+|.+| ..+ ..... .......+ +.
T Consensus 192 ~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~-~~~~~~~d---i~ 263 (427)
T 3fq8_A 192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQ-EKFGVTPD---LT 263 (427)
T ss_dssp HHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHH-HHTTCCCS---EE
T ss_pred HHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhh-HhcCCCCC---hh
Confidence 99865557788888888888887776 555999999999999999999999988 321 11222 11122223 45
Q ss_pred cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
||||.++ +|+|+||++ +++++++. +.... .....+.+.+++.++..+|+...-
T Consensus 264 t~sK~~~-~G~~~G~~~---~~~~~~~~------------~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-------- 319 (427)
T 3fq8_A 264 TLGKIIG-GGLPVGAYG---GKREIMQL------------VAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-------- 319 (427)
T ss_dssp EECGGGG-TTSSCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--------
T ss_pred hhhhhhh-CCcceEEEE---EcHHHHHh------------hccCCCccccCCCCcCHHHHHHHHHHHHHHHh--------
Confidence 8899999 899999995 78888877 54321 122335567777777666531100
Q ss_pred HHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCC-----C-------------HHHHHHHHHcccEEE
Q 012238 378 EMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL-----N-------------KAQSDNMTNKWHVYM 436 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l-----~-------------~~~~~~ll~~~gI~v 436 (467)
+...++++++++.+.+.|++ ..+. ....+..|+++|+.+ . .++.+.+++ +||.+
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v 394 (427)
T 3fq8_A 320 PGTYEYLDQITKRLSDGLLAIAQETGH----AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYL 394 (427)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTC----CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEEC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCC----CeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEE
Confidence 12233344444444444430 3332 122233455555432 1 234556655 59999
Q ss_pred eCCC--eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 437 TKDG--RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 437 ~~gg--Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+++ |+++.. .+++++++++++|+++++++
T Consensus 395 ~~~~~~r~~~~~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 395 APSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp CSSTTSCEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence 9987 776543 27899999999999998763
No 136
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=1.1e-25 Score=225.01 Aligned_cols=302 Identities=13% Similarity=0.025 Sum_probs=209.4
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEE
Q 012238 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV 180 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~V 180 (467)
+.+.+.+++.+.+..+. ..|.+..+..++|+++++++.. ++.|++ ++| ++|++++ +... +.+||+|
T Consensus 15 ~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~sG-t~al~~~--l~~l~~~~gd~V 81 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGA-------AHALAV--TNG-THALELA--LQVMGVGPGTEV 81 (388)
T ss_dssp CCHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTC-------SEEEEE--SCH-HHHHHHH--HHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHhCC-------CeEEEe--CCH-HHHHHHH--HHHcCCCCcCEE
Confidence 34889999998886543 4677788999999999999743 245666 554 9999997 4434 5699999
Q ss_pred EEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012238 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE 260 (467)
Q Consensus 181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~ 260 (467)
+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++ +++++++ |+||||.+.+. ++|+++|++
T Consensus 82 i~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~n~tG~~~~l---~~i~~la~~ 151 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVT---PRTKVIM---PVHMAGLMADM---DALAKISAD 151 (388)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC---TTEEEEC---CBCGGGCCCCH---HHHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcC---cCceEEE---EeCCccCcCCH---HHHHHHHHH
Confidence 999999999999999999999999985 3357899999999986 4666665 89999999765 577777999
Q ss_pred cCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHH--HhhhhhhhHHHH
Q 012238 261 KNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL--AARCCEVAVIQV 337 (467)
Q Consensus 261 ~~~~li~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~--~~~~~~~~~~~~ 337 (467)
+|+++|+|++|... .+.+ .+ + ... .++.+.||||..+++|.|+||++ +.++.+ ++.
T Consensus 152 ~~~~li~D~a~~~g~~~~~--~~---~---~~~--~~i~~~S~s~~K~l~g~~~G~~~--~~~~~~~~~~~--------- 210 (388)
T 1b9h_A 152 TGVPLLQDAAHAHGARWQG--KR---V---GEL--DSIATFSFQNGKLMTAGEGGAVV--FPDGETEKYET--------- 210 (388)
T ss_dssp HTCCBCEECTTCTTCEETT--EE---G---GGS--SSCEEEECCTTSSSCSSSCEEEE--ECTTCHHHHHH---------
T ss_pred cCCEEEEecchhcCCccCC--ee---c---ccc--cceEEEEccCCCcccCCCeEEEE--ECCHHHHHHHH---------
Confidence 99999999998753 3321 11 1 111 26889999988777788999996 344335 444
Q ss_pred HHHHHhhccC--------------ccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 012238 338 KSQLKRLARP--------------MYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSG 402 (467)
Q Consensus 338 ~~~l~~~~~~--------------~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~ 402 (467)
+...... .+. ..+.+...++... .+.+++..++++++++++.+.|+ ++.
T Consensus 211 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~----------~~~l~~~~~~~~~~~~~l~~~L~-~~~-- 274 (388)
T 1b9h_A 211 ---AFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ----------LARLDEQIAVRDERWTLLSRLLG-AID-- 274 (388)
T ss_dssp ---HHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH----------HTTHHHHHHHHHHHHHHHHHHHH-TST--
T ss_pred ---HHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhc-cCC--
Confidence 3222110 011 1233322222111 12255677788888999999998 762
Q ss_pred CCccccc------CCcceEEecCCC------HH-HHHHHHHcccEEEeCC---------------------------C--
Q 012238 403 KDWSFIL------RQIGMFSFTGLN------KA-QSDNMTNKWHVYMTKD---------------------------G-- 440 (467)
Q Consensus 403 ~~~~~~~------~~~g~f~~~~l~------~~-~~~~ll~~~gI~v~~g---------------------------g-- 440 (467)
+ +.+.. +.+++++|+.+. .+ +.+.|. ++||.+.++ +
T Consensus 275 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (388)
T 1b9h_A 275 G-VVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNT 352 (388)
T ss_dssp T-CEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHH
T ss_pred C-ccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHH
Confidence 1 44443 345677777542 22 344555 469988643 0
Q ss_pred --------eEEec-cC-ChhhHHHHHHHHHHHHHh
Q 012238 441 --------RISLA-GL-SLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 441 --------Ris~~-~~-~~~~i~~~~~~l~~~l~~ 465 (467)
||++. .+ +++++++++++|++++++
T Consensus 353 ~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 353 DAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 55554 35 679999999999998875
No 137
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=6.4e-26 Score=225.42 Aligned_cols=318 Identities=14% Similarity=0.105 Sum_probs=211.7
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
..++|+-|.. + +++.+.+++.+.+.. .|.+. .-..++++.+++++... .+.+.+++ |+||+
T Consensus 19 ~~~~~~pgp~------~-~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~g~~----~~~~~i~~--~~ggt 81 (376)
T 3f0h_A 19 GMLNFTVGPV------M-SSEEVRAIGAEQVPY----FRTTEFSSTMLENEKFMLEYAKAP----EGSKAVFM--TCSST 81 (376)
T ss_dssp SCEECSSSSC------C-CCHHHHHHHTSCCCC----CSSHHHHHHHHHHHHHHHHHHTCC----TTCEEEEE--SSCHH
T ss_pred CceeecCCCC------C-CcHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHhCCC----CCceEEEE--cCChh
Confidence 5677775532 2 378888877654321 22221 23456667777775432 11234555 88999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
++++++ +...+.+||+|++++|+|..+. ..+...|++++.++. +.++.+|++.+++.++ ++++++++++|+
T Consensus 82 ~al~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~~---~~~~~v~~~~~~ 154 (376)
T 3f0h_A 82 GSMEAV--VMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL--EHGKKLTKEKLYEYDN---QNFTGLLVNVDE 154 (376)
T ss_dssp HHHHHH--HHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC--CTTCCCCHHHHHTTTT---SCCCEEEEESEE
T ss_pred HHHHHH--HHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHHHhhc---cCceEEEEeccc
Confidence 999998 4445679999999998776543 356788999999988 3457899999998765 577889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEE
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNV 318 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~ 318 (467)
||||.+++ +++|+++|++||+++|+|++|...... .+ +. .. ...+++.|+||.++ ++| +|+++
T Consensus 155 nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~---~~---~~---~~-~~d~~~~s~~K~l~~~~G--~g~~~- 218 (376)
T 3f0h_A 155 TSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP---FN---MN---EC-GADVMITGSQKVLACPPG--ISVIV- 218 (376)
T ss_dssp TTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CC---HH---HH-TCSEEEEETTTTTCCCSS--CEEEE-
T ss_pred CCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc---cc---cc---cc-CccEEEecCcccccCCCc--eEEEE-
Confidence 99999999 667888899999999999997755432 11 11 11 23588999999998 666 57764
Q ss_pred ecCCHHHHhhhhhhhHHHHHHHHHhhc----------------cCc-cCCCchHHHHHHHHHhCChhhHHHHHH-HHHHH
Q 012238 319 VCSSSDLAARCCEVAVIQVKSQLKRLA----------------RPM-YSNPPVHGARIVANVVGNPALFDEWKA-EMEMM 380 (467)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~l~~~~----------------~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~ 380 (467)
.++++++. +.... ... ...++.....++..++.. + . +. .+++.
T Consensus 219 --~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~-~--~~~~~~~~ 279 (376)
T 3f0h_A 219 --LAPRGVER------------VEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKE--I-K--KHGGADAE 279 (376)
T ss_dssp --ECHHHHHH------------HHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--H-H--HTTHHHHH
T ss_pred --ECHHHHHH------------hhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHH--H-H--HhcCHHHH
Confidence 67777665 33211 011 123333222333333211 1 0 11 36778
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCcccccCC--cceEEec--CCCHH-HHHHHHHcccEEEeCCC--------eEEecc-
Q 012238 381 AGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ--IGMFSFT--GLNKA-QSDNMTNKWHVYMTKDG--------RISLAG- 446 (467)
Q Consensus 381 ~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~--~g~f~~~--~l~~~-~~~~ll~~~gI~v~~gg--------Ris~~~- 446 (467)
+++++++++++.+.|+ +++ +.+..+. ..++.+. +.+.+ +.+.+++++||.+.+|. ||+++.
T Consensus 280 ~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~ 354 (376)
T 3f0h_A 280 VARIASQAADFRAKIK-DLP----FELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGA 354 (376)
T ss_dssp HHHHHHHHHHHHHHTT-TSS----EEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSS
T ss_pred HHHHHHHHHHHHHHHH-HcC----CccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCC
Confidence 8889999999999998 776 3444332 2333332 44544 45666665699998762 999863
Q ss_pred CChhhHHHHHHHHHHHHHh
Q 012238 447 LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 447 ~~~~~i~~~~~~l~~~l~~ 465 (467)
.+++++++++++|++++++
T Consensus 355 ~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 355 LTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4789999999999999875
No 138
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.95 E-value=3.5e-25 Score=224.14 Aligned_cols=310 Identities=15% Similarity=0.059 Sum_probs=217.3
Q ss_pred EecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC-CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238 87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165 (467)
Q Consensus 87 ~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~ 165 (467)
+|+.|.| .++. ++.+.+++.+.+..+ .|.+ ..+..++|+++++++.. +++++ |+||++++.
T Consensus 20 ~l~~~~p----~~~~-p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~ 81 (424)
T 2po3_A 20 PLLVGRP----NRID-RARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAGV--------RHAVA--TCNATAGLQ 81 (424)
T ss_dssp CEETTCC----CCCC-HHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHH
T ss_pred cccccCC----CCCC-hHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHH
Confidence 6888887 5554 788899988887653 4766 68999999999999743 47888 999999999
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCC
Q 012238 166 LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID 245 (467)
Q Consensus 166 l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~ 245 (467)
++. ..+.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++ +++++++++ ||||..
T Consensus 82 ~~l---~~l~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~---~~tG~~ 151 (424)
T 2po3_A 82 LLA---HAAGLTGEVIMPSMTFAATPHALRWIGLTPVFADID-PDTGNLDPDQVAAAVT---PRTSAVVGV---HLWGRP 151 (424)
T ss_dssp HHH---HHHTCCSEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTSSBCHHHHGGGCC---TTEEEEEEE---CGGGCC
T ss_pred HHH---HHcCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhhC---cCCcEEEEE---CCCCCc
Confidence 983 334589999999999999999999999999999985 3467899999998886 467777764 599987
Q ss_pred CCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHH
Q 012238 246 PTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD 324 (467)
Q Consensus 246 ~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~ 324 (467)
. ++++|+++|+++|++||+||+|. ++.++. . ++ ... .+ +++.||||..+++|+|+||++ +.+++
T Consensus 152 ~---~l~~i~~la~~~~~~li~Dea~~~g~~~~~---~--~~---~~~-~d-i~~~S~sk~K~l~~~~~G~~v--~~~~~ 216 (424)
T 2po3_A 152 C---AADQLRKVADEHGLRLYFDAAHALGCAVDG---R--PA---GSL-GD-AEVFSFHATKAVNAFEGGAVV--TDDAD 216 (424)
T ss_dssp C---CHHHHHHHHHHTTCEEEEECTTCTTCEETT---E--ET---TSS-SS-EEEEECCTTSSSCCSSCEEEE--ESCHH
T ss_pred C---CHHHHHHHHHHcCCEEEEECccccCCeECC---e--ec---ccc-cC-EEEEeCCCCCCccCCCCeEEE--eCCHH
Confidence 5 45677888999999999999998 565432 1 11 111 22 889999977777779999996 44477
Q ss_pred HHhhhhhhhHHHHHHHHHhhccCccC------------CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 325 LAARCCEVAVIQVKSQLKRLARPMYS------------NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLF 392 (467)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~ 392 (467)
+++. +......... ..+.+. +...+. . .+.+++..++.+++++++.
T Consensus 217 l~~~------------l~~~~~~~~~~~~~~~~~g~~~~~~~~~---aa~~l~--~-----~~~~~~~~~~~~~~~~~l~ 274 (424)
T 2po3_A 217 LAAR------------IRALHNFGFDLPGGSPAGGTNAKMSEAA---AAMGLT--S-----LDAFPEVIDRNRRNHAAYR 274 (424)
T ss_dssp HHHH------------HHHHHBTTTTCTTCCTTCCCBCCCCHHH---HHHHHH--H-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------------HHHHHhcCccccccccccCcCCCcCHHH---HHHHHH--H-----HHHHHHHHHHHHHHHHHHH
Confidence 7776 4333221110 112222 211221 1 1235566777777888888
Q ss_pred HHhhhccCCCCCccccc-CCcc---eEEe-c-------CCCHHHHHHHHHcccEEEeCC--------------------C
Q 012238 393 DSLSAKDKSGKDWSFIL-RQIG---MFSF-T-------GLNKAQSDNMTNKWHVYMTKD--------------------G 440 (467)
Q Consensus 393 ~~l~~~~g~~~~~~~~~-~~~g---~f~~-~-------~l~~~~~~~ll~~~gI~v~~g--------------------g 440 (467)
+.|+ ++. + +.+.. +.++ +++| + +.+.+.+.+.+.++||.+.+. +
T Consensus 275 ~~L~-~~~--g-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~ 350 (424)
T 2po3_A 275 EHLA-DLP--G-VLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPH 350 (424)
T ss_dssp HHTC-SCT--T-EEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHH
T ss_pred HHhc-cCC--C-ccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChh
Confidence 8887 652 1 45544 3333 2333 3 235555555566679998752 0
Q ss_pred --e-----EEec---cCChhhHHHHHHHHHHHHHh
Q 012238 441 --R-----ISLA---GLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 441 --R-----is~~---~~~~~~i~~~~~~l~~~l~~ 465 (467)
| |+++ ..+++++++++++|++++++
T Consensus 351 ~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 351 TERLAARVLSLPTGTAIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp HHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 3 7764 34789999999999998764
No 139
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.95 E-value=4.1e-26 Score=228.68 Aligned_cols=329 Identities=12% Similarity=0.027 Sum_probs=210.2
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC--CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+.+.+||+.|.+.+.-+. .+|.+.+++.+.+.... +.| .+.....++++.+++++. .+++++ ++|
T Consensus 35 g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~--------~~~v~~--~~g 101 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGY--NHAKFNAKIKAQVDKLL-HTSNLYYNENIAAAAKNLAKASA--------LERVFF--TNS 101 (395)
T ss_dssp CCEEEESSHHHHTCTTCB--SCHHHHHHHHHHHTTCS-CCCTTSBCHHHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred CCEEEECCCcHHhccCCC--CCHHHHHHHHHHHHhcc-ccccccCCHHHHHHHHHHHHhcC--------CCeEEE--eCC
Confidence 357899999865332232 37889999988875432 222 234445667777777642 468988 999
Q ss_pred chhHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHHhhCC-------------CCeEEeeeecCCCCCCChhhHHH
Q 012238 160 GTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIFNDAR-------------VPWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 160 gt~al~l~~~~l~~~-----~~gd~Vlv~~P~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
|++|+.++..++... .++|+|++++|+|..+.......+ .++..++. .|++.+++
T Consensus 102 g~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~ 174 (395)
T 3nx3_A 102 GTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEK 174 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHH
Confidence 999999985443333 467999999999987654433332 23333332 37889988
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238 222 DIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (467)
Q Consensus 222 ~l~~~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (467)
.++ ++++++++.+++|++|.. ++.+++++|.++|++||+++|+||+|.+|...+. .... .......+ +.
T Consensus 175 ~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~-~~~~~~~d---~~ 244 (395)
T 3nx3_A 175 LVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAY-EHAQILPD---IM 244 (395)
T ss_dssp TCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCS---EE
T ss_pred hcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhH-HhcCCCCC---EE
Confidence 886 566777777777888776 6788899999999999999999999998854321 1111 11111222 44
Q ss_pred cCccCcccCCCccceEEEecCCHHH-HhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238 301 SYSKNLGLYAERIGAMNVVCSSSDL-AARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEM 379 (467)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~ 379 (467)
+|||.++ .|+|+||++ .++++ ++. +.........+.+.+++.++..+|+...- ++.++.
T Consensus 245 t~sK~~~-~G~~~G~~~---~~~~~~~~~------------~~~~~~~~~~~~~~~~~~aa~aal~~~~~----~~~~~~ 304 (395)
T 3nx3_A 245 TSAKALG-CGLSVGAFV---INQKVASNS------------LEAGDHGSTYGGNPLVCAGVNAVFEIFKE----EKILEN 304 (395)
T ss_dssp EECGGGT-TTSCCEEEE---ECHHHHHHH------------SCTTCCSSCBSCCHHHHHHHHHHHHHHHH----TTHHHH
T ss_pred Eeccccc-CCCceEEEE---Echhhhhhh------------cCCcccCCCCCCCHHHHHHHHHHHHHHHh----hHHHHH
Confidence 7899999 599999995 67776 665 54433333446677777777766642110 111223
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----CH-HHHHHHHHcccEEEeCCC----eEEecc-CCh
Q 012238 380 MAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----NK-AQSDNMTNKWHVYMTKDG----RISLAG-LSL 449 (467)
Q Consensus 380 ~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----~~-~~~~~ll~~~gI~v~~gg----Ris~~~-~~~ 449 (467)
.++..+..++.+.+.+. .++. +....+.+ .|+|+.+ +. ++.+.+++ +||.+.++| ||+++. .++
T Consensus 305 ~~~~~~~~~~~l~~~~~-~~~~---~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~iRi~~~~~~t~ 378 (395)
T 3nx3_A 305 VNKLTPYLEQSLDELIN-EFDF---CKKRKGLG-FMQGLSLDKSVKVAKVIQKCQE-NALLLISCGENDLRFLPPLILQK 378 (395)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTT---EEEEEEET-TEEEEEECTTSCHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHH-hCCC---eEEEEeEE-EEEEEEeCCcchHHHHHHHHHH-CCCEEecCCCCEEEEECCCCCCH
Confidence 33333333444444443 3331 23334444 4555432 33 34555555 699999875 887443 388
Q ss_pred hhHHHHHHHHHHHHHhc
Q 012238 450 AKCEYLADAIIDSYHNV 466 (467)
Q Consensus 450 ~~i~~~~~~l~~~l~~~ 466 (467)
+++++++++|+++++++
T Consensus 379 e~i~~~l~~l~~~l~~~ 395 (395)
T 3nx3_A 379 EHIDEMSEKLRKALKSF 395 (395)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998753
No 140
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=3.2e-26 Score=228.17 Aligned_cols=334 Identities=12% Similarity=0.035 Sum_probs=218.2
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
++.+.|+.|. +.+++.+.+++.+... ..|.|. ....++|+.+++++.... .+++++|++ |+||
T Consensus 4 ~~~~~~~p~p-------~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~--~~g~ 68 (385)
T 2bkw_A 4 SVDTLLIPGP-------IILSGAVQKALDVPSL----GHTSPEFVSIFQRVLKNTRAVFKSAA--ASKSQPFVL--AGSG 68 (385)
T ss_dssp CCCEECSSSS-------CCCCHHHHHTTSCCCC----CTTSHHHHHHHHHHHHHHHHHTTCCG--GGTCEEEEE--ESCT
T ss_pred ccceeecCCC-------cCchHHHHHHHhcccc----ccCCHHHHHHHHHHHHHHHHHhCCCC--CCCCceEEE--cCch
Confidence 3456777552 2236778777655332 123232 256789999999976542 234678988 9999
Q ss_pred hhHHHHHHHHHHHh---CCCCEEEEc-CCCCcch-HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 161 TGSLRLAAALIERY---FPGAKVLIS-SPTWGNH-KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 161 t~al~l~~~~l~~~---~~gd~Vlv~-~P~y~~~-~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
++++.++ +.... .+||+|+++ .|+|..+ ...++..|++++.++.. +.++.+|++.+++.+++ .+++++++
T Consensus 69 t~al~~~--~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~~ 143 (385)
T 2bkw_A 69 TLGWDIF--ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTV 143 (385)
T ss_dssp THHHHHH--HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEE
T ss_pred HHHHHHH--HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhc--CCCCEEEE
Confidence 9999998 34444 789999888 5667665 36778899999999872 23567999999999974 25678888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc-ccCCCc
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAER 312 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R 312 (467)
++|+||||.+++. ++|+++|+++ |+++|+|++|...... .+ + .....++++.|+||.+ +++|+
T Consensus 144 ~~~~nptG~~~~l---~~i~~~~~~~~~~~~li~D~a~~~~~~~---~~---~----~~~~~d~~~~s~~K~~~~~~G~- 209 (385)
T 2bkw_A 144 THVDTSTAVLSDL---KAISQAIKQTSPETFFVVDAVCSIGCEE---FE---F----DEWGVDFALTASQKAIGAPAGL- 209 (385)
T ss_dssp ESEETTTTEECCH---HHHHHHHHHHCTTSEEEEECTTTTTTSC---CC---T----TTTTCSEEEEESSSTTCCCSCE-
T ss_pred EccCCCcCeEcCH---HHHHHHHHhhCCCCEEEEECccccCCcc---cc---c----cccCceEEEecCccccccCCcc-
Confidence 9999999999985 4778889999 9999999998632211 11 1 1113457899999955 46775
Q ss_pred cceEEEecCCHHHHh-hhhh---------hh-HHHHHHHHHhhcc--Cc-cCCCchHHHHHHHHHhCChhhHHHHHH-HH
Q 012238 313 IGAMNVVCSSSDLAA-RCCE---------VA-VIQVKSQLKRLAR--PM-YSNPPVHGARIVANVVGNPALFDEWKA-EM 377 (467)
Q Consensus 313 iG~~~~v~~~~~~~~-~~~~---------~~-~~~~~~~l~~~~~--~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l 377 (467)
||++ .+++.++ .-.. .. ...+......... .. ...++...+.++..+|+. + .+ .+
T Consensus 210 -G~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~----~~~~~ 279 (385)
T 2bkw_A 210 -SISL---CSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE--I----LEEGL 279 (385)
T ss_dssp -EEEE---ECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--H----HHHCH
T ss_pred -eEEE---EcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH--H----HHccH
Confidence 9986 5666655 3000 00 0001111111111 11 124555555454444421 1 12 25
Q ss_pred HHHHHHHHHHHHHHHHHh-hhccCCCCCcccccC-----CcceEEecCCC-H-HHHHHHHHcccEEEeCC-------C--
Q 012238 378 EMMAGRIKNVRQKLFDSL-SAKDKSGKDWSFILR-----QIGMFSFTGLN-K-AQSDNMTNKWHVYMTKD-------G-- 440 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l-~~~~g~~~~~~~~~~-----~~g~f~~~~l~-~-~~~~~ll~~~gI~v~~g-------g-- 440 (467)
++.+++++++++++.+.| + ++| +++..+ ..+.++|+.+. . ++.++|. ++||.+.+| +
T Consensus 280 ~~~~~~~~~~~~~l~~~L~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~i 353 (385)
T 2bkw_A 280 HKRWDLHREMSDWFKDSLVN-GLQ----LTSVSRYPSNMSAHGLTAVYVADPPDVIAFLK-SHGVVIAGGIHKDIGPKYI 353 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TTC----CEESSCSSSTTBCSSCEEEECSCHHHHHHHHH-HTTEECBCCCCTTTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcC----ceecccCcccccCCceEEEecCCHHHHHHHHH-HCCeEEeCCCCcccCCCEE
Confidence 678888999999999999 8 765 455432 23556666542 3 4455554 579999886 1
Q ss_pred eEE-ec----cCChhhHHHHHHHHHHHHHhc
Q 012238 441 RIS-LA----GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 Ris-~~----~~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+ ++ ..+++++++++++|+++++++
T Consensus 354 Ris~~~~~~~~~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 354 RIGHMGVTACNKNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp EECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred EEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence 999 76 247899999999999998765
No 141
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.94 E-value=1.3e-25 Score=227.94 Aligned_cols=328 Identities=14% Similarity=0.023 Sum_probs=213.3
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+...|||+.|.+.+.-++ .+|.+.+++.+.+..+....| +.....++++.+++++. ..++|++ ++||+
T Consensus 55 g~~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~sgs 122 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGH--KHPRVLEAVEEALARGWLYGA-PGEAEVLLAEKILGYVK-------RGGMIRF--VNSGT 122 (434)
T ss_dssp CCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHHC-------TTCEEEE--ESSHH
T ss_pred CCEEEEcccchhcccCCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHH
Confidence 346899998875222233 378899999888865433344 44456778888888752 1578988 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh--------------hCCC------CeEEeeeecCCCCCCChhhHHH
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--------------DARV------PWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~--------------~~G~------~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
+|+.++.++...+.++++|++.+|+|..+...+. ..|+ .+..++. .|++.+++
T Consensus 123 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~ 195 (434)
T 2epj_A 123 EATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALER 195 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHH
Confidence 9999984432225567899999999987544221 1233 2344433 48999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238 222 DIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (467)
Q Consensus 222 ~l~~~~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (467)
.+++.++++++++++..+||||.++ +.+.+++|.++|++||+++|+||+|.++..+ ..... .......++ .
T Consensus 196 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g----~~~~~-~~~~~~~di---~ 267 (434)
T 2epj_A 196 VFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG----LEGAQ-GYFNIEGDI---I 267 (434)
T ss_dssp HHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSS----TTHHH-HHHTCCCSE---E
T ss_pred HHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCC----cchhh-HHhCCCCCe---e
Confidence 9874223556666665567899866 7999999999999999999999999987433 11122 122222333 4
Q ss_pred cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
||||.++. |+|+||++ .++++++. +.... ...+.+.+.+++.++..+|+.. ++
T Consensus 268 s~sK~l~~-G~~~G~v~---~~~~~~~~------------l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~------~~-- 323 (434)
T 2epj_A 268 VLGKIIGG-GFPVGAVA---GSREVMSL------------LTPQGKVFNAGTFNAHPITMAAGLATLKAL------EE-- 323 (434)
T ss_dssp EEEGGGGT-TSSCEEEE---ECHHHHTT------------BTTTSSBCCCCTTTTCHHHHHHHHHHHHHH------HH--
T ss_pred eecchhcC-Ccceeeee---ecHHHHHh------------hccCCCcccCCCCCcCHHHHHHHHHHHHHH------Hh--
Confidence 89999995 99999996 67777776 44311 1123356667776666655321 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCCcceEEecCCC------------------HHHHHHHHHcccEE
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVY 435 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~ 435 (467)
++..++++++++++.+.|+ ++ ++ .....+.| .|+|+.+. .++.+.+++ +||.
T Consensus 324 ~~~~~~~~~~~~~l~~~L~-~~~~~~~~---~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~ 397 (434)
T 2epj_A 324 EPVYSVSREAAKALEEAAS-EVLDRTGL---PYTINRVE-SMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVF 397 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHH-HHHHHHTC---CEEEEEET-TEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEE
T ss_pred cCHHHHHHHHHHHHHHHHH-HHHhhCCC---cEEEEEee-eEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeE
Confidence 2345666667777777776 43 42 11233444 45554321 234555554 6999
Q ss_pred EeCCC--eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 436 MTKDG--RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 436 v~~gg--Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+.+++ |+.+. ..+++++++++++|+++++++
T Consensus 398 v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 398 IAPSNLEAVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp CCSSTTSCEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred EeccCCCcEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 99986 54432 238899999999999998754
No 142
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.94 E-value=3.6e-26 Score=231.99 Aligned_cols=338 Identities=11% Similarity=0.003 Sum_probs=211.3
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
...+||+.|.+...-+. .+|.+.+++.+.+.... ...| +.....++++.+++++.. ++++|++ |+||
T Consensus 43 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~------~~~~v~~--~~gg 111 (433)
T 1zod_A 43 RAILDFTSGQMSAVLGH--CHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANITPP------GLDRALL--LSTG 111 (433)
T ss_dssp CEEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHSCT------TCCEEEE--ESCH
T ss_pred CEEEEcccchhccccCC--CCHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhCCC------CcCEEEE--eCch
Confidence 46789988765222222 36788898888775431 1234 334456777777777421 2678999 9999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-C-----------CCeEEeeeecC--CCC--------CCChhh
Q 012238 161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-R-----------VPWSEYRYYDP--KTV--------GLDFEG 218 (467)
Q Consensus 161 t~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~-G-----------~~~~~v~~~~~--~~~--------~~d~~~ 218 (467)
++|+.++.++......+|+|++.+|+|..+....... + ..+..++.... ..+ .+|++.
T Consensus 112 ~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~ 191 (433)
T 1zod_A 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY 191 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence 9999998443222234589999999997654432211 1 13334433111 011 236899
Q ss_pred HHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeE
Q 012238 219 MIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296 (467)
Q Consensus 219 l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (467)
+++.+++.. .++++++++..+||||. .++.+++++|+++|++||+++|+||+|.+|...+. .... .......+
T Consensus 192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~---~~~~-~~~~~~~d- 266 (433)
T 1zod_A 192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFAC-QRDGVTPD- 266 (433)
T ss_dssp HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCCCS-
T ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch---HhHH-hhcCCCCC-
Confidence 999887421 34556555444688996 67889999999999999999999999998864321 1112 11222233
Q ss_pred EEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh--ccCccCCCchHHHHHHHHHhCChhhHHHHH
Q 012238 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL--ARPMYSNPPVHGARIVANVVGNPALFDEWK 374 (467)
Q Consensus 297 i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 374 (467)
+.||||.++. |+|+||++ .++++++. +... ......+.+.+++.++..+|+.. +
T Consensus 267 --i~s~sK~~~~-G~~ig~~~---~~~~~~~~------------~~~~~~~~~~t~~~~~~~~~a~~aal~~~------~ 322 (433)
T 1zod_A 267 --ILTLSKTLGA-GLPLAAIV---TSAAIEER------------AHELGYLFYTTHVSDPLPAAVGLRVLDVV------Q 322 (433)
T ss_dssp --EEEECHHHHT-TSSCEEEE---ECHHHHHH------------HHHTTCCCCCTTTTCHHHHHHHHHHHHHH------H
T ss_pred --EEEecccccC-CCCeeEEE---EhHHHHHh------------hccCCCCCCCCCCcCHHHHHHHHHHHHHH------H
Confidence 3489999995 99999996 67777776 4432 11134456777777776665321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC-------------CHHHHHHHHHcccEEEeCC
Q 012238 375 AEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-------------NKAQSDNMTNKWHVYMTKD 439 (467)
Q Consensus 375 ~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l-------------~~~~~~~ll~~~gI~v~~g 439 (467)
+ +...++++++++++.+.|+ ++ ..+. +....+.|. |+|+.+ ..++.+.+++ +||.+.++
T Consensus 323 ~--~~~~~~~~~~~~~l~~~l~-~l~~~~~~-~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~ 396 (433)
T 1zod_A 323 R--DGLVARANVMGDRLRRGLL-DLMERFDC-IGDVRGRGL-LLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIV 396 (433)
T ss_dssp H--TTHHHHHHHHHHHHHHHHH-HHHHHCTT-EEEEEEETT-EEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEE
T ss_pred h--CCHHHHHHHHHHHHHHHHH-HHHHhCCC-eEEEEEEEE-EEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEecc
Confidence 1 1344556666777777766 43 1111 233444444 555532 1234556664 69999875
Q ss_pred ------C--eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 440 ------G--RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 ------g--Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||+++ ..+++++++++++|+++++++
T Consensus 397 ~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 397 QLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp CCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 3 78654 338899999999999998765
No 143
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.94 E-value=6e-26 Score=231.70 Aligned_cols=340 Identities=13% Similarity=0.016 Sum_probs=205.8
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCc--CCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE--YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+.+.|||+.|.+...-|. .+|.|.+++.+.+....... +.+.....++++.+++++... ..++|++ |+|
T Consensus 63 G~~ylD~~~~~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-----~~~~v~~--~~s 133 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGA--SHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGD-----HDKRTAL--FNS 133 (453)
T ss_dssp SCEEEESSHHHHTCTTCT--TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCS-----SCEEEEE--ESS
T ss_pred CCEEEEcCCCcccCcCCC--CCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCC-----CCcEEEE--eCc
Confidence 357899998865333333 26888888888775532111 123334455555555553211 1468988 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC--------------CeEEeeeecC--CCCCCC--------
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV--------------PWSEYRYYDP--KTVGLD-------- 215 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~--------------~~~~v~~~~~--~~~~~d-------- 215 (467)
|++|++++.++......+++|++.+|+|..+.......+. .+..++.... +.++.+
T Consensus 134 GseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (453)
T 4ffc_A 134 GAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRA 213 (453)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHH
Confidence 9999999844332223568999999999876554433222 3444544211 112333
Q ss_pred hhhHHHHHHcCCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238 216 FEGMIADIKAAPGGSFILLHGCAHNPTG--IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293 (467)
Q Consensus 216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG--~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (467)
.+.+++.+. .+...++++.|.||+| ..++.+.+++|.++|++||+++|+||+|.+|...+. .+.. ......
T Consensus 214 ~~~l~~~i~---~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~a~-~~~~~~ 286 (453)
T 4ffc_A 214 ISRIETQIG---AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA---WFAS-EHEGIV 286 (453)
T ss_dssp HHHHHHHTC---GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCC
T ss_pred HHHHHHhcC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc---cchh-hhcCCC
Confidence 233444332 3455666678888887 445788899999999999999999999998864321 1111 111222
Q ss_pred CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW 373 (467)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 373 (467)
.+ +.+|||.++. |+|+||++ +++++++. +.......+.+.+.+++.++..+|+... +
T Consensus 287 pd---i~t~sK~~~~-G~~~G~~~---~~~~i~~~------------~~~~~~~~t~~~~~~~~aaa~aal~~~~--~-- 343 (453)
T 4ffc_A 287 PD---IVTMAKGIAG-GMPLSAVT---GRAELMDA------------VYAGGLGGTYGGNPVTCAAAVAALGVMR--E-- 343 (453)
T ss_dssp CS---EEEECGGGGT-TSSCEEEE---EEHHHHTT------------SCTTSSCCSSSSCHHHHHHHHHHHHHHH--H--
T ss_pred cc---hHhhhhhhcC-CcCeEEEE---ECHHHHhh------------hcccCcCCCCCcCHHHHHHHHHHHHHhh--h--
Confidence 23 3478999995 99999995 67888776 5544444455677888888777764211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC------------CHHHHHHHHHcccEEEeCCC-
Q 012238 374 KAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------------NKAQSDNMTNKWHVYMTKDG- 440 (467)
Q Consensus 374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l------------~~~~~~~ll~~~gI~v~~gg- 440 (467)
++.++..++..+..++.+.+.+. .++. +....+.| .|+|+.+ ..++.+.+++ +||.+.++|
T Consensus 344 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~---~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~ 417 (453)
T 4ffc_A 344 LDLPARARAIEASVTSRLSALAE-EVDI---IGEVRGRG-AMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGT 417 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH-HCSS---EEEEEEET-TEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hCCC---eEEEEeec-eEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCC
Confidence 11122233333333344444333 3331 23334444 4555432 1233455555 699998864
Q ss_pred -----eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 441 -----RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 -----Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++. .+++++++++++|+++++++
T Consensus 418 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 418 FGNVIRLLPPLVIGDDLLDEGITALSDIIRAK 449 (453)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 776542 38899999999999998764
No 144
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.94 E-value=1.8e-25 Score=228.65 Aligned_cols=349 Identities=12% Similarity=0.030 Sum_probs=214.9
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.|||+.|.+...-+. .+|.+.+++.+.+.... ..|....+..++++++++++....+ .+.++|++ |+||+
T Consensus 50 G~~~lD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~gGs 122 (460)
T 3gju_A 50 GRKSIDAFAGLYCVNVGY--GRQKIADAIATQAKNLA-YYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYF--GLSGS 122 (460)
T ss_dssp CCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHHS-CCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEE--ESSHH
T ss_pred CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eCchH
Confidence 457899998855333333 26888888888775421 2233233333444444444433211 23578999 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeec---CCCCCCC----
Q 012238 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYD---PKTVGLD---- 215 (467)
Q Consensus 162 ~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~---~~~~~~d---- 215 (467)
+|++.+.+++... .++++|++..|+|..+.......+. .+..++... ..+++.+
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 9999985443322 3568999999999876554433221 334444310 0122334
Q ss_pred ----hhhHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238 216 ----FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (467)
Q Consensus 216 ----~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 289 (467)
++.|++.+++. +++++++++..++|++|. +++.+.+++|.++|++||+++|+||+|.+|...+ ..... ..
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~-~~ 278 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG---TMFGS-DH 278 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHH-HH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---ccchH-hh
Confidence 57888888642 245667777777777787 7788889999999999999999999999886432 11222 22
Q ss_pred HhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHH---HHhhccCccCCCchHHHHHHHHHhC
Q 012238 290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQ---LKRLARPMYSNPPVHGARIVANVVG 365 (467)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~L~ 365 (467)
....+++ .+|||.++ .| +|+||++ +++++++. +... ..........+.+.+++.++..+|+
T Consensus 279 ~~~~pdi---~t~sK~l~-gG~~~lg~v~---~~~~i~~~--------~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 343 (460)
T 3gju_A 279 YGIKPDL---ITIAKGLT-SAYAPLSGVI---VADRVWQV--------LVQGSDKLGSLGHGWTYSAHPICVAAGVANLE 343 (460)
T ss_dssp HTCCCSE---EEECGGGT-TTSSCCEEEE---EEHHHHHH--------HHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred cCCCCCe---eeeehhhc-CCCCCeEEEE---ECHHHHHH--------HhcccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 2223343 36899997 56 8999995 77888777 2211 0112223344667778887777765
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC----------------CHHHHHHHH
Q 012238 366 NPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL----------------NKAQSDNMT 429 (467)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l----------------~~~~~~~ll 429 (467)
... + ++.++..++..+..++.+.+.+. +++. +....+.|. |+++.+ ..++.+.++
T Consensus 344 ~~~--~--~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (460)
T 3gju_A 344 LID--E--MDLVTNAGETGAYFRAELAKAVG-GHKN---VGEVRGDGM-LAAVEFVADKDDRVFFDASQKIGPQVATALA 414 (460)
T ss_dssp HHH--H--TTHHHHHHHHHHHHHHHHHHHHT-TSTT---EEEEEEETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHH
T ss_pred HHH--h--ccHHHHHHHHHHHHHHHHHHHHh-cCCC---eEEEeeeeE-EEEEEEccCccccccccchHHHHHHHHHHHH
Confidence 211 0 12244555556666666666666 5542 344455555 433321 113455565
Q ss_pred HcccEEEeCCC-----eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 430 NKWHVYMTKDG-----RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 430 ~~~gI~v~~gg-----Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ +||.+.++| ||+.. ..+++++++++++|+++++++
T Consensus 415 ~-~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 415 A-SGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp H-TTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred H-CCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5 599999864 88743 338899999999999998764
No 145
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.94 E-value=8.6e-25 Score=221.61 Aligned_cols=331 Identities=13% Similarity=0.052 Sum_probs=203.6
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.+||+.|...+.-+. .+|.+.+++.+.+.......| +.....++++.+++++. . .+++++ ++||+
T Consensus 52 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~------~~~v~~--~~sGs 119 (429)
T 4e77_A 52 GKAYIDYVGSWGPMILGH--NHPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP-T------MDMVRM--VNSGT 119 (429)
T ss_dssp CCEEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-T------CSEEEE--ESSHH
T ss_pred CCEEEECCCchhccccCC--CCHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC-C------CCEEEE--eCcHH
Confidence 457899998876333333 378899999988866433344 66667788888888753 1 578999 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC-------------C------CeEEeeeecCCCCCCChhhHHH
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------------V------PWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G-------------~------~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
++++++.++.....++++|++..++|..+..... ..| . .+..++. .|++.+++
T Consensus 120 ea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~ 192 (429)
T 4e77_A 120 EATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQ 192 (429)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHH
Confidence 9999985443334467899999999977654211 111 1 1111111 28999999
Q ss_pred HHHcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238 222 DIKAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (467)
Q Consensus 222 ~l~~~~~~~~~i~i~~p~NPTG~~~--~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (467)
.+++.++++.+++ ++|+||+|.++ +.+.+++|.++|++||+++|+||+|.+|..+. .... ......+++
T Consensus 193 ~l~~~~~~~~~vi-~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~----~~~~-~~~~~~pdi--- 263 (429)
T 4e77_A 193 AFEQYPQEVACII-VEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL----AGAQ-DYYHVIPDL--- 263 (429)
T ss_dssp HHHHSTTTEEEEE-ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT----TCHH-HHTTCCCSE---
T ss_pred HHHhcCCCEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc----chHH-HhcCCCCCe---
Confidence 9986444555554 56776665443 34559999999999999999999999883221 1112 122222333
Q ss_pred ecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---ccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---ARPMYSNPPVHGARIVANVVGNPALFDEWKAE 376 (467)
Q Consensus 300 ~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 376 (467)
.||||.++ +|+|+||++ +++++++. +... ......+.+.+++.++..+|+...- ++.
T Consensus 264 ~t~sK~~~-~G~~~G~~~---~~~~~~~~------------l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~ 323 (429)
T 4e77_A 264 TCLGKIIG-GGMPVGAFG---GRREVMNA------------LAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ----VGV 323 (429)
T ss_dssp EEEEGGGG-TTSCCEEEE---ECHHHHTT------------BTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS----TTH
T ss_pred eeeccccc-CCCCeEEEE---ECHHHHHH------------hccCCCccccCCCCCCHHHHHHHHHHHHHHHh----cCH
Confidence 48999999 899999985 78888776 4432 1122335667777776666541100 011
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--C-----------------HHHHHHHHHcccEEEe
Q 012238 377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-----------------KAQSDNMTNKWHVYMT 437 (467)
Q Consensus 377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~-----------------~~~~~~ll~~~gI~v~ 437 (467)
++..++..+..++.|.+.+. ..+. ....+..|.|+|+.+ . .++.+.+++ +||.+.
T Consensus 324 ~~~~~~~~~~l~~~L~~~~~-~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~ 397 (429)
T 4e77_A 324 YETLTELTDSLATGLRHAAK-EENI----PLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTC----CCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECC
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCC----ceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEe
Confidence 22222222333333443333 3443 222233455655533 1 345566665 599999
Q ss_pred CCC--eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 438 KDG--RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 438 ~gg--Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+++ |+.+. ..+++++++++++|+++++++
T Consensus 398 ~~~~~~~~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (429)
T 4e77_A 398 PSAFEAGFMSLAHSNEDIQKTVNAARRCFAKL 429 (429)
T ss_dssp SSTTSCEECCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCEEEeccCCHHHHHHHHHHHHHHHHhC
Confidence 986 55443 238899999999999998753
No 146
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.94 E-value=1.5e-25 Score=232.56 Aligned_cols=321 Identities=13% Similarity=0.039 Sum_probs=214.1
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCce--eeeecCCchhHHHHHHHHHHHhCCC---
Q 012238 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPG--- 177 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~al~l~~~~l~~~~~g--- 177 (467)
.+.+.+++......+. ..|....+..++++.+++++....|.+.+++++ ++ |+||++++.++.+. ...+|
T Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~al~a--~~~~g~~~ 187 (514)
T 3mad_A 113 IAFLNEVYALQSQSNP-LHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLAMKT--YRDWARAT 187 (514)
T ss_dssp HHHHHHHHHHHTTCCT-TCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC-cccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHHHHH--HHHHhhhh
Confidence 3455555555543332 455556677788888877776666665555787 77 99999999998333 33344
Q ss_pred -----CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012238 178 -----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE 252 (467)
Q Consensus 178 -----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~ 252 (467)
|+|+++.|+|..+...++..|++++.++++ .++.+|++.|+++++ ++++++++++|+||||.+.+. +
T Consensus 188 ~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~~l---~ 259 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLD--ADYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVDPI---P 259 (514)
T ss_dssp HCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCCCH---H
T ss_pred cCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeC--CCCCCCHHHHHHHhc---cCCEEEEEeCCCCCCccccCH---H
Confidence 999999999999999999999999999984 367899999999997 578899999999999999885 5
Q ss_pred HHHHHHHhcCCeeEEeccCCCCCCC---CCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhh
Q 012238 253 KIADVIQEKNHIPFFDVAYQGFASG---SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARC 329 (467)
Q Consensus 253 ~l~~~~~~~~~~li~Deay~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~ 329 (467)
+|.++|++||+++|+|++|.++... ........+ . .......+++.|++|.++ .|.++||++ +.++.....
T Consensus 260 ~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~-~-~~~~g~d~~~~s~~K~l~-~~~~~g~~~--~~~~~~~~~- 333 (514)
T 3mad_A 260 EIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPF-D-FRLEGVTSVSADTHKYGY-GAKGTSVIL--YRRPDLLHY- 333 (514)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCC-S-TTSTTCCEEEECTTTTTC-CCSSCEEEE--ESSHHHHTT-
T ss_pred HHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcc-c-ccCCCCcEEEECchhccC-CCCCeEEEE--EeCHHHhcc-
Confidence 7777799999999999999887531 000000000 0 011124678899999865 678899996 455544332
Q ss_pred hhhhHHHHHHHHHhhc---------cCccC-CCch---HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238 330 CEVAVIQVKSQLKRLA---------RPMYS-NPPV---HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 396 (467)
Q Consensus 330 ~~~~~~~~~~~l~~~~---------~~~~~-~~~~---~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~ 396 (467)
..... ..... ..+. .++.++...+. ...+++..+++.++++++.+.|+
T Consensus 334 -----------~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~--------~~~~~~~~~~~~~~~~~l~~~L~ 394 (514)
T 3mad_A 334 -----------QYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG--------EEGYLDATRRILQAADRLKAGVR 394 (514)
T ss_dssp -----------TCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 10000 00011 1222 22222222221 22356788888899999999998
Q ss_pred hccCCCCCcccccCCcceEEec--CCCHHH-HHHHHHcccEEEeCC---C--eEEeccC--ChhhHHHHHHHHHHHHHhc
Q 012238 397 AKDKSGKDWSFILRQIGMFSFT--GLNKAQ-SDNMTNKWHVYMTKD---G--RISLAGL--SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 397 ~~~g~~~~~~~~~~~~g~f~~~--~l~~~~-~~~ll~~~gI~v~~g---g--Ris~~~~--~~~~i~~~~~~l~~~l~~~ 466 (467)
++. ++++..+..+++.+. +.+... .+.|. ++||.+... + |++++.. +++++++++++|+++++++
T Consensus 395 -~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~ 469 (514)
T 3mad_A 395 -AIP---SLKILGDPLWVIAVASDELNIYQVMEEMA-GRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQV 469 (514)
T ss_dssp -TST---TCEESSCCSSEEEEECSSSCHHHHHHHHH-TTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred -hCC---CeEEeCCCeEEEEEeCCCCCHHHHHHHHH-hcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 752 156666665544332 234444 45555 459887322 1 8888732 4589999999999998753
No 147
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.94 E-value=3.4e-25 Score=226.58 Aligned_cols=349 Identities=11% Similarity=-0.019 Sum_probs=208.2
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.|||+.|.+...-|. .+|.|.+++.+.+.... ..|....+..+.++++++++....+ .+.++|++ ++||+
T Consensus 49 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~ggs 121 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGY--GRKDFAEAARRQMEELP-FYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TNSGS 121 (459)
T ss_dssp CCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHCS-CCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ESSHH
T ss_pred CCEEEECCCchhcccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCchH
Confidence 357899999865333333 36889999888875432 2232223333444444444433222 22568999 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeec---CCCCCCC----
Q 012238 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYD---PKTVGLD---- 215 (467)
Q Consensus 162 ~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~---~~~~~~d---- 215 (467)
+|+..+.+++... .++++|++..|+|..+.......+. .+..++... ...+ .|
T Consensus 122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~ 200 (459)
T 4a6r_A 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEF 200 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHH
Confidence 9999985443322 2578999999999887655443322 222333210 0111 34
Q ss_pred ----hhhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238 216 ----FEGMIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (467)
Q Consensus 216 ----~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 289 (467)
++.|++.+++.. +++.++++...+|++|. .++.+.+++|.++|++||+++|+||+|.+|...+ ..... ..
T Consensus 201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G---~~~~~-~~ 276 (459)
T 4a6r_A 201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG---EWFGH-QH 276 (459)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSSHH-HH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---ccchH-hh
Confidence 788888886422 34455555555555555 5589999999999999999999999999886432 11222 22
Q ss_pred HhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL 369 (467)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 369 (467)
....++++ +|||.++..|+|+||++ +++++++. +... .......+.+.+.+++.++..+|+...-
T Consensus 277 ~~~~pdi~---t~sK~l~gg~~~lg~v~---~~~~i~~~--------~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~ 341 (459)
T 4a6r_A 277 FGFQPDLF---TAAKGLSSGYLPIGAVF---VGKRVAEG--------LIAG-GDFNHGFTYSGHPVCAAVAHANVAALRD 341 (459)
T ss_dssp HTCCCSEE---EECGGGGTTSSCCEEEE---ECHHHHHH--------HHHH-CTTHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCee---ehhhhhcCCCCCcccee---eCHHHHHH--------hhcC-CCcccCCCCCCCHHHHHHHHHHHHHHhc
Confidence 23333433 68899985559999995 78888877 2210 0222222345667777777777652110
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec--CC-------------CHHHHHHHHHccc
Q 012238 370 FDEWKAEMEMMA-GRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT--GL-------------NKAQSDNMTNKWH 433 (467)
Q Consensus 370 ~~~~~~~l~~~~-~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~--~l-------------~~~~~~~ll~~~g 433 (467)
++.+++.+ +..+..++.+.+.|. .++. +....+.|.|+.+. .. ..++.+.+++ +|
T Consensus 342 ----~~~~~~~~~~~~~~~~~~l~~~l~-~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 412 (459)
T 4a6r_A 342 ----EGIVQRVKDDIGPYMQKRWRETFS-RFEH---VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NN 412 (459)
T ss_dssp ----TCHHHHHHHTHHHHHHHHHHHHHT-TCTT---EEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TT
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHh-cCCC---eEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHH-CC
Confidence 11123333 333344444444444 4332 34455555543321 10 1234556665 59
Q ss_pred EEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 434 VYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 434 I~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
|++.++| ||+.. ..+++++++++++|+++++++
T Consensus 413 v~v~~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 413 LIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999976 77743 238899999999999998753
No 148
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.94 E-value=3.5e-24 Score=217.78 Aligned_cols=328 Identities=11% Similarity=0.082 Sum_probs=220.5
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+...|||+.|.... ...+.+|.+.+++.+.+..... ..| +.....++++.+++++. .+++++ ++|
T Consensus 75 g~~ylD~~sg~~~~--~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s 141 (439)
T 2oat_A 75 GRKYFDFLSSYSAV--NQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLFN--------YHKVLP--MNT 141 (439)
T ss_dssp CCEEEESSGGGGTT--TTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred CCEEEEccCCcccc--cCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhcC--------CCEEEE--eCC
Confidence 34789999986521 2222478899999888754321 123 34457789999999862 468888 999
Q ss_pred chhHHHHHHHHHHHh-------CCC-CEEEEcCCCCcch-HHHHhhCC------------CCeEEeeeecCCCCCCChhh
Q 012238 160 GTGSLRLAAALIERY-------FPG-AKVLISSPTWGNH-KNIFNDAR------------VPWSEYRYYDPKTVGLDFEG 218 (467)
Q Consensus 160 gt~al~l~~~~l~~~-------~~g-d~Vlv~~P~y~~~-~~~~~~~G------------~~~~~v~~~~~~~~~~d~~~ 218 (467)
|++|++++..++..+ .+| |+|++.+|+|..+ ...+...| ..++.+|. .|++.
T Consensus 142 GseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~ 214 (439)
T 2oat_A 142 GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPA 214 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHH
Confidence 999999985443211 357 8999999999765 34445444 34555544 38999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238 219 MIADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297 (467)
Q Consensus 219 l~~~l~~~~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (467)
+++.++. ++++++++...+|+||. .++.+.+++|.++|++||+++|+||+|.++...+. .+.. .......+++
T Consensus 215 le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~-~~~~~~~Di~ 288 (439)
T 2oat_A 215 LERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAV-DYENVRPDIV 288 (439)
T ss_dssp HHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCSEE
T ss_pred HHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhH-HHhCCCCcEE
Confidence 9999852 45667776666678896 57899999999999999999999999987754321 1111 1112223433
Q ss_pred EEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238 298 VAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE 376 (467)
Q Consensus 298 ~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 376 (467)
||||.++ .| +|+||++ .++++++. +.........+.+.+++.++..+|+.. ++
T Consensus 289 ---t~sK~l~-~G~~~~G~v~---~~~~~~~~------------l~~~~~~~t~~~~~~~~aaa~aal~~~------~~- 342 (439)
T 2oat_A 289 ---LLGKALS-GGLYPVSAVL---CDDDIMLT------------IKPGEHGSTYGGNPLGCRVAIAALEVL------EE- 342 (439)
T ss_dssp ---EECGGGG-TTSSCCEEEE---ECHHHHTT------------SCTTSSCCSSTTCHHHHHHHHHHHHHH------HH-
T ss_pred ---Eeccccc-CCCCCeEEEE---ECHHHHhc------------cCCCCcccCCCcCHHHHHHHHHHHHHH------hh-
Confidence 8999999 69 9999996 67777776 443322334456667777666555321 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC------CH-HHHHHHHHcccEEEeCCC----eEEec
Q 012238 377 MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL------NK-AQSDNMTNKWHVYMTKDG----RISLA 445 (467)
Q Consensus 377 l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l------~~-~~~~~ll~~~gI~v~~gg----Ris~~ 445 (467)
+...++++++++++.+.|+ +++.+. +....+. |.|+|+.+ +. ++.+.+++ +||.+.+++ ||+++
T Consensus 343 -~~~~~~~~~~~~~l~~~L~-~l~~~~-~~~~~~~-g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~~~~~iRi~~~ 417 (439)
T 2oat_A 343 -ENLAENADKLGIILRNELM-KLPSDV-VTAVRGK-GLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPTHGDIIRFAPP 417 (439)
T ss_dssp -TTHHHHHHHHHHHHHHHHT-TSCTTT-EEEEEEE-TTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBSSSSEEEECCC
T ss_pred -hhHHHHHHHHHHHHHHHHH-HhcCCC-cEEEEee-eeEEEEEEecCccHHHHHHHHHHHH-CCeEEecCCCCEEEEECc
Confidence 2456778888999999998 775321 1122334 44555432 23 44566665 599999864 88665
Q ss_pred -cCChhhHHHHHHHHHHHHHhc
Q 012238 446 -GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 446 -~~~~~~i~~~~~~l~~~l~~~ 466 (467)
..+++++++++++|+++++++
T Consensus 418 ~~~t~e~i~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 418 LVIKEDELRESIEIINKTILSF 439 (439)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHhC
Confidence 248899999999999998763
No 149
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.94 E-value=2.3e-25 Score=227.45 Aligned_cols=325 Identities=13% Similarity=0.026 Sum_probs=200.8
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
.+.|||+.|.+.+.-++ .++.+.+++.+.+.... .| .+..++++++++++....+ .+++|++ ++||++
T Consensus 57 ~~~iD~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~gg~e 124 (453)
T 2cy8_A 57 NVYLDFFGGHGALVLGH--GHPRVNAAIAEALSHGV--QY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGSGTE 124 (453)
T ss_dssp CEEEESCTTTTSCTTCB--TCHHHHHHHHHHHTTTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESCHHH
T ss_pred CEEEECcccHhhcccCC--CCHHHHHHHHHHHHhCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCCHHH
Confidence 46899999865222233 37889999998886532 22 2345788888888765432 3678988 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-----------CCCC------eEEeeeecCCCCCCChhhHHHHHHc
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-----------ARVP------WSEYRYYDPKTVGLDFEGMIADIKA 225 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~-----------~G~~------~~~v~~~~~~~~~~d~~~l~~~l~~ 225 (467)
|+.++.++...+.++++|++.+|+|..+...+.. .|+. +..++. .|++.+++.+++
T Consensus 125 A~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~ 197 (453)
T 2cy8_A 125 TTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFAN 197 (453)
T ss_dssp HHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHh
Confidence 9999844322244568899999999866543221 1332 122221 489999999874
Q ss_pred CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238 226 APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK 304 (467)
Q Consensus 226 ~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 304 (467)
.++++++++++..+||||.+ .+.+++++|.++|++||++||+||+|.++..+ ..... .......++ .||||
T Consensus 198 ~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g----~~~~~-~~~~~~~di---~s~sK 269 (453)
T 2cy8_A 198 HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVG----NHGMQ-ALLDVQPDL---TCLAK 269 (453)
T ss_dssp HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTC----TTHHH-HHHTCCCSE---EEEEG
T ss_pred cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccC----chhhh-HHhCCCCcE---EEECh
Confidence 32355666655556789976 47999999999999999999999999987322 11222 122222343 38999
Q ss_pred CcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHh-----hccCccCCCchHHHHHHHHHhCC-hhhHHHHHHHHH
Q 012238 305 NLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR-----LARPMYSNPPVHGARIVANVVGN-PALFDEWKAEME 378 (467)
Q Consensus 305 ~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~l~ 378 (467)
.++ +|+|+||++ .++++++. +.. .......+.+.+++.++..+|+. . . +
T Consensus 270 ~l~-~G~~~G~v~---~~~~~~~~------------l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~-------~ 324 (453)
T 2cy8_A 270 ASA-GGLPGGILG---GREDVMGV------------LSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--E-------D 324 (453)
T ss_dssp GGG-TTSSCEEEE---ECHHHHTT------------SSSCC---------CCCCHHHHHHHHHHHHHHH--H-------T
T ss_pred hhh-CCcceEEEe---chHHHHHH------------hccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--h-------h
Confidence 999 599999996 67777776 332 01112335666777776665532 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCCcceEEecCCC------------------------HHHHHHHHH
Q 012238 379 MMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------------KAQSDNMTN 430 (467)
Q Consensus 379 ~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------------~~~~~~ll~ 430 (467)
...++++++++++.+.|+ ++ +. .....+.| .|+|+.+. .++.+.+++
T Consensus 325 ~~~~~~~~~~~~l~~~L~-~~~~~~~~---~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 399 (453)
T 2cy8_A 325 DVCAKINDLGQFAREAMN-HLFARKGL---NWLAYGRF-SGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL 399 (453)
T ss_dssp THHHHHHHHHHHHHHHHH-HHHHHTTC---CEEEECCT-TEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-HHHhhCCC---cEEEEEee-eEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH
Confidence 234555566666666665 43 32 12234444 45555321 234556665
Q ss_pred cccEEEeCCCe--EEeccCChhhHHHHHHHHHHHHHhc
Q 012238 431 KWHVYMTKDGR--ISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 431 ~~gI~v~~ggR--is~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+||.+.+++| +++.. +++++++++++|+++++++
T Consensus 400 -~Gv~v~~~~~~~l~~~~-t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 400 -EGVDIGGRGSVFLSAQH-EREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp -TTEECBTTTEEECCTTC-CHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEeCCCCEEeeccC-CHHHHHHHHHHHHHHHHHH
Confidence 6999988774 44333 8899999999999988753
No 150
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-25 Score=229.76 Aligned_cols=325 Identities=14% Similarity=0.118 Sum_probs=218.5
Q ss_pred hHHHHHHHHHHHhcC---CCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh---CC
Q 012238 103 LDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---FP 176 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~---~~ 176 (467)
++.+.+++.+.+... ....|....|..++++.+++++....|.+.+++++++ ++||++++.++...+... .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 77 GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHHHHHHHHHHHhcC
Confidence 456666666655431 1244656678888888888887666666555678888 999999999983332111 14
Q ss_pred C---CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 012238 177 G---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK 253 (467)
Q Consensus 177 g---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~ 253 (467)
| |+|+++.|+|..+...++..|++++.+|+++ +++.+|++.+++.++ ++++++++++|+||||.+.+.+ +
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~l~---~ 227 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIADDIE---G 227 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCCSCT---T
T ss_pred CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCCCHH---H
Confidence 5 8999999999999999999999999999843 367899999999987 5788999999999999998754 7
Q ss_pred HHHHHHhcCCeeEEeccCCCCCCC-----CCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238 254 IADVIQEKNHIPFFDVAYQGFASG-----SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR 328 (467)
Q Consensus 254 l~~~~~~~~~~li~Deay~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~ 328 (467)
|+++|++||+++|+|++|.++... +.. ..+.+ .+ ....-.+++.|++|.++ .|.++||++ +.++.+...
T Consensus 228 i~~la~~~g~~livD~a~~~~~~~f~~~~~~~-~~~~~-~~-~~~g~d~~~~s~~K~l~-~~~~~g~~~--~~~~~~~~~ 301 (497)
T 3mc6_A 228 LGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK-NLPLL-DF-RVPGVTSISCDTHKYGF-APKGSSVIM--YRNSDLRMH 301 (497)
T ss_dssp TTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC-SCCCC-ST-TSTTCCEEEEETTTTTC-CCSSCEEEE--CSSHHHHTT
T ss_pred HHHHHHHhCCEEEEECcchhhhhhhhhhhccc-CCccc-cc-cCCCCcEEEECchhhcC-CCCCceeEE--ecCHHHHhh
Confidence 777799999999999999754210 000 00000 00 11123577889999864 678899996 455433221
Q ss_pred hhhhhHHHHHHHHHhhccCccCC-----C------c---hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 329 CCEVAVIQVKSQLKRLARPMYSN-----P------P---VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS 394 (467)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~-----~------~---~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~ 394 (467)
.......+.. + + ..++.++...+. ...+++..+++.++++++.+.
T Consensus 302 -------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~--------~~~~~~~~~~~~~~~~~l~~~ 360 (497)
T 3mc6_A 302 -------------QYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG--------ENGYIESCQEIVGAAMKFKKY 360 (497)
T ss_dssp -------------TSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 1 1 223344433332 123566778888889999999
Q ss_pred hhhccCCCCCcccc-cCCcceEEec--CCCHHHHHHHHHcccEEEeCCC-----eEEeccCChhhHHHHHHHHHHHHHhc
Q 012238 395 LSAKDKSGKDWSFI-LRQIGMFSFT--GLNKAQSDNMTNKWHVYMTKDG-----RISLAGLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 395 l~~~~g~~~~~~~~-~~~~g~f~~~--~l~~~~~~~ll~~~gI~v~~gg-----Ris~~~~~~~~i~~~~~~l~~~l~~~ 466 (467)
|+ +. +|+ +++. ++.++++.|. +.+...+.+.|.++||.+..++ |++++..+++++++++++|+++++++
T Consensus 361 L~-~~-~~g-~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~ 437 (497)
T 3mc6_A 361 IQ-EN-IPD-LDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQEL 437 (497)
T ss_dssp HH-HS-CTT-CEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHH
T ss_pred HH-hc-CCC-EEEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 98 73 111 4554 4566666664 3455444444445699887653 99988768899999999999998754
No 151
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.94 E-value=7.7e-25 Score=221.98 Aligned_cols=321 Identities=16% Similarity=0.112 Sum_probs=198.3
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC---------CcchHHHHHHHHHHHhCCCCcccccCceee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---------IEGLAAFNKVTAELLFGADNSVLKEQRVAT 154 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~ 154 (467)
+.+.|..+.+ . ++++.+++++.+.+... ..|+. .....++|+++++++.. ++++|++
T Consensus 18 ~~~~Ld~~~~----~--~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~ 83 (432)
T 3a9z_A 18 RKVYMDYNAT----T--PLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKAKDIINTARASLAKMIGG------KPQDIIF 83 (432)
T ss_dssp CCEECBTTTC----C--CCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE
T ss_pred CcEEeeCCcc----C--CCCHHHHHHHHHHHHHh--cCCCccCcHHHHHHHHHHHHHHHHHHHHcCC------CcCeEEE
Confidence 5788877765 2 34788999998877541 22321 11347999999999743 2678998
Q ss_pred eecCCchhHHHHHHHHHHH------hCCCCEEEEcCCCCcch-----------------HHHHhhCCCCeEEeeeecCCC
Q 012238 155 VQGLSGTGSLRLAAALIER------YFPGAKVLISSPTWGNH-----------------KNIFNDARVPWSEYRYYDPKT 211 (467)
Q Consensus 155 ~~t~ggt~al~l~~~~l~~------~~~gd~Vlv~~P~y~~~-----------------~~~~~~~G~~~~~v~~~~~~~ 211 (467)
|+|+++++.++...+.. ..+||+|+++.|+|..| ....+..|++++.+++++ .+
T Consensus 84 --~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~-~~ 160 (432)
T 3a9z_A 84 --TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK-VN 160 (432)
T ss_dssp --ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT-TT
T ss_pred --eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc-cc
Confidence 99999999997433310 14899999999999875 344456799999999852 24
Q ss_pred CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC----------CeeEEeccCCCCCCCCCCC
Q 012238 212 VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN----------HIPFFDVAYQGFASGSLDN 281 (467)
Q Consensus 212 ~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~----------~~li~Deay~~~~~~~~~~ 281 (467)
+.+|++.+++.++ ++++++++++|+||||.+++.+ +|.++|+++| +++|+||+|..... ..
T Consensus 161 ~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~---~~ 231 (432)
T 3a9z_A 161 GQVEVEDILAAVR---PTTCLVTIMLANNETGVIMPIS---EISRRIKALNQIRAASGLPRVLVHTDAAQALGKR---RV 231 (432)
T ss_dssp SSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCCHH---HHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS---CC
T ss_pred CCcCHHHHHHhcc---CCceEEEEECcccCcccccCHH---HHHHHHHhcCcccccccCCceEEEEEchhhhCCc---cc
Confidence 6799999999886 5788999999999999999976 5667799998 99999999865431 11
Q ss_pred ChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHH-HhhhhhhhHHHHHHHHHhh-------ccCccCCCc
Q 012238 282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL-AARCCEVAVIQVKSQLKRL-------ARPMYSNPP 353 (467)
Q Consensus 282 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~-~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 353 (467)
+ +. ..+.+ +++.|+||.+| .|+||++ .+++. ... +... .......++
T Consensus 232 ~---~~---~~~~d-~~~~s~~K~~g---~~~G~~~---~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 286 (432)
T 3a9z_A 232 D---VE---DLGVD-FLTIVGHKFYG---PRIGALY---VRGVGKLTP------------LYPMLFGGGQERNFRPGTEN 286 (432)
T ss_dssp C---HH---HHCCS-EEEEEGGGTTC---CSCEEEE---ETTBTTTBC------------CCCSCCSSCGGGGTSCSCCC
T ss_pred C---hh---hcCCC-EEEEehhHhcC---CcceEEE---EccccccCC------------cCceeecCCccccccCCCcC
Confidence 1 11 12233 56899999875 5699996 33333 222 2111 011122345
Q ss_pred hHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccC------Cc--ceEEecCC--CH
Q 012238 354 VHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILR------QI--GMFSFTGL--NK 422 (467)
Q Consensus 354 ~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~------~~--g~f~~~~l--~~ 422 (467)
...+.++..++.. +.+.+++++++++++++++.+.|+ ++ |. .+.+..+ .+ ..|.+.+. +.
T Consensus 287 ~~~~~a~~aal~~------~~~~~~~~~~~~~~~~~~l~~~L~-~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
T 3a9z_A 287 TPMIAGLGKAADL------VSENCETYEAHMRDIRDYLEERLE-AEFGK--RIHLNSRFPGVERLPNTCNFSIQGSQLRG 357 (432)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-HHHGG--GEEESSCCTTCCBCTTEEEEEECSTTCCH
T ss_pred HHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHH-hccCC--cEEEeCCCCcccCCCCEEEEEeCCCCCcH
Confidence 5555555444431 123467888899999999999998 64 42 0111111 11 22444442 33
Q ss_pred HHHHHHHHcccEEEeC-------------------C-------C--eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238 423 AQSDNMTNKWHVYMTK-------------------D-------G--RISLAGL-SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 423 ~~~~~ll~~~gI~v~~-------------------g-------g--Ris~~~~-~~~~i~~~~~~l~~~l~~~ 466 (467)
+.+...+ .+|.+.. | + ||+++.. +++++++++++|+++++++
T Consensus 358 ~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 358 YMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp HHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3322222 1344322 1 3 9998854 6899999999999998754
No 152
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.94 E-value=5.2e-25 Score=222.89 Aligned_cols=322 Identities=14% Similarity=0.012 Sum_probs=206.9
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchh
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG 162 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~ 162 (467)
...|||+.|...+.-++ .+|.+.+++.+.+..+....| +..-..++++.+++++. .+++|++ ++||++
T Consensus 52 ~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-------~~~~v~~--~~~g~e 119 (424)
T 2e7u_A 52 NRYLDYVMSWGPLILGH--AHPKVLARVRETLERGLTFGA-PSPLEVALAKKVKRAYP-------FVDLVRF--VNSGTE 119 (424)
T ss_dssp CEEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHCT-------TCCEEEE--ESSHHH
T ss_pred CEEEEccccccccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHHH
Confidence 46899998864222233 378899999888865432344 33445667777777632 2678988 999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-h-------------CCC------CeEEeeeecCCCCCCChhhHHHH
Q 012238 163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D-------------ARV------PWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 163 al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~-------------~G~------~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
|+.++.++...+.++++|++.+|+|..+...+. . .|+ .++.++. .|++.+++.
T Consensus 120 a~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~ 192 (424)
T 2e7u_A 120 ATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREV 192 (424)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHH
Confidence 999974432234566899999999987654322 1 222 2333332 489999998
Q ss_pred HHcCCCCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe
Q 012238 223 IKAAPGGSFILLHGCAHNP-TGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300 (467)
Q Consensus 223 l~~~~~~~~~i~i~~p~NP-TG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (467)
+++.++++++++ ++|+|| ||.++ +.+.+++|.++ ++||+++|+||+|.++..+ ..... .......++ .
T Consensus 193 l~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g----~~~~~-~~~~~~~di---~ 262 (424)
T 2e7u_A 193 LKRRGEEIAAII-FEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA----FGGAT-ELLGLKPDL---V 262 (424)
T ss_dssp HHHHGGGEEEEE-ECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS----TTHHH-HHHTCCCSE---E
T ss_pred HHhCCCCEEEEE-EeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc----hhHHH-HHhCCCcch---h
Confidence 874222444444 566665 89765 79999999999 9999999999999988433 11122 222223343 3
Q ss_pred cCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc---cCccCCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 301 SYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA---RPMYSNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 301 S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
||||.++ +|+|+||++ +++++++. +.... ...+.+.+.+++.++..+|+.. ++ .
T Consensus 263 s~sK~l~-~G~~~G~~~---~~~~~~~~------------~~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~-~ 319 (424)
T 2e7u_A 263 TLGKILG-GGLPAAAYA---GRREIMEK------------VAPLGPVYQAGTLSGNPLAMAAGLATLELL------EE-N 319 (424)
T ss_dssp EECGGGG-TTSSCEEEE---ECHHHHTT------------BTTTSSBCCCCTTCSCHHHHHHHHHHHHHH------HH-C
T ss_pred hhhhhhh-CCcceEEEE---EcHHHHhh------------hcccCCcccCCCCCCCHHHHHHHHHHHHHH------Hh-c
Confidence 8999999 699999996 67777776 44311 1123356667777776665421 11 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCCcceEEecCCC------------------HHHHHHHHHcccEE
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVY 435 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~ 435 (467)
++..++++++++++.+.|+ ++ +. .....+.| .|+|+.+. .++.+.++ ++||.
T Consensus 320 ~~~~~~~~~~~~~l~~~L~-~~~~~~~~---~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~ 393 (424)
T 2e7u_A 320 PGYYAYLEDLGARLEAGLK-EVLKEKGL---PHTVNRVG-SMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIY 393 (424)
T ss_dssp THHHHHHHHHHHHHHHHHH-HHHHHTTC---CCEEEEET-TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEE
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHhCCC---ceEEEeec-eEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeE
Confidence 3456666777777777776 43 42 11234444 46665442 13455565 57999
Q ss_pred EeCCC--e--EEeccCChhhHHHHHHHHHHHH
Q 012238 436 MTKDG--R--ISLAGLSLAKCEYLADAIIDSY 463 (467)
Q Consensus 436 v~~gg--R--is~~~~~~~~i~~~~~~l~~~l 463 (467)
+.+++ | +++.. +++++++++++|++++
T Consensus 394 v~~~~~~~~~~~~~~-t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 394 WPPSNFEAAFLSVAH-REEDVEKTLEALRKAL 424 (424)
T ss_dssp CCSSSSSCEECCTTC-CHHHHHHHHHHHHHHC
T ss_pred EeccCCCceEeeccC-CHHHHHHHHHHHHHhC
Confidence 99986 4 45443 8899999999998764
No 153
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.94 E-value=8.6e-25 Score=223.17 Aligned_cols=338 Identities=10% Similarity=0.024 Sum_probs=209.1
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
+.+.|||+.|...+.-+. .+|.|.+++.+.+..... ..+.+.....++++.+++++... .+ |++ |+||
T Consensus 48 g~~~lD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~------~~-v~~--~~gg 116 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGY--GRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGE------YV-IFF--SNSG 116 (452)
T ss_dssp CCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSC------EE-EEE--ESSH
T ss_pred CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCC------ce-EEE--eCch
Confidence 357899999954333333 268899999888765321 11223344556666666664321 33 877 9999
Q ss_pred hhHHHHHHHHHHHh---C---CCCEEEEcCCCCcchHHHHhhCCCC-------------eEEeeeecCCCCC-CC-----
Q 012238 161 TGSLRLAAALIERY---F---PGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVG-LD----- 215 (467)
Q Consensus 161 t~al~l~~~~l~~~---~---~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~-~d----- 215 (467)
++|+..+.+++... . ++|+|++.+|+|..+.......+.. +..++..+..... -|
T Consensus 117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (452)
T 3n5m_A 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIY 196 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhH
Confidence 99999985443322 4 7899999999998876554444332 2223221110111 12
Q ss_pred ----hhhHHHHHH-cCCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238 216 ----FEGMIADIK-AAPGGSFILLHGCA-HNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288 (467)
Q Consensus 216 ----~~~l~~~l~-~~~~~~~~i~i~~p-~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 288 (467)
++.|++.++ ..++++++++++++ +| ||.++ +.+.+++|.++|++||+++|+||+|.+|...+. .+.. .
T Consensus 197 ~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~-~ 271 (452)
T 3n5m_A 197 DVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGF-M 271 (452)
T ss_dssp GCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG-G
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchh-h
Confidence 789999887 22346677777777 89 99766 888899999999999999999999998864321 1111 1
Q ss_pred HHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHh------hccCccCCCchHHHHHHH
Q 012238 289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR------LARPMYSNPPVHGARIVA 361 (467)
Q Consensus 289 ~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~ 361 (467)
......+ +.+|||.++. | +|+||++ +++++++. +.. .....+.+.+.+++.++.
T Consensus 272 ~~~~~~d---i~t~sK~l~~-G~~~ig~~~---~~~~i~~~------------~~~~~~~~~~~~~~t~~~~~~~~aaa~ 332 (452)
T 3n5m_A 272 NYDVKPD---IITMAKGITS-AYLPLSATA---VKREIYEA------------FKGKGEYEFFRHINTFGGNPAACALAL 332 (452)
T ss_dssp GTTCCCS---EEEECGGGGT-TSSCCEEEE---EEHHHHGG------------GCSSSTTCSCCCCCSSTTCHHHHHHHH
T ss_pred hcCCCCC---EEeecccccC-CCcceEEEE---ECHHHHHH------------HhhccCCCCccccCCCCCCHHHHHHHH
Confidence 1111223 3368999995 9 9999995 77888776 532 112234466777777777
Q ss_pred HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC----------C----HHHH
Q 012238 362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL----------N----KAQS 425 (467)
Q Consensus 362 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l----------~----~~~~ 425 (467)
.+|+... + +...++++++++++.+.|+ ++ +.+. +....+.|.++ ++.+ + .++.
T Consensus 333 aal~~~~------~--~~~~~~~~~~~~~l~~~L~-~~~~~~~~-~~~~~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~ 401 (452)
T 3n5m_A 333 KNLEIIE------N--ENLIERSAQMGSLLLEQLK-EEIGEHPL-VGDIRGKGLLV-GIELVNDKETKEPIDNDKIASVV 401 (452)
T ss_dssp HHHHHHH------H--TTHHHHHHHHHHHHHHHHH-HHHTTCTT-EEEEEESSSCE-EEEEEEETTTTEECCHHHHHHHH
T ss_pred HHHHHHH------h--ccHHHHHHHHHHHHHHHHH-HHHhcCCC-eEEEEEEEEEE-EEEEecCCcccCCCCHHHHHHHH
Confidence 6664211 0 1233444444444444444 32 1111 33445555543 3322 1 2345
Q ss_pred HHHHHcccEEEeCCC----------eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 426 DNMTNKWHVYMTKDG----------RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 426 ~~ll~~~gI~v~~gg----------Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
+.+++ +||.+.+++ ||+++. .+++++++++++|+++++++
T Consensus 402 ~~l~~-~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 402 NACKE-KGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp HHHHH-TTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH-CCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 56665 599998862 776332 38899999999999998753
No 154
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.94 E-value=5.9e-25 Score=221.57 Aligned_cols=317 Identities=10% Similarity=0.023 Sum_probs=207.9
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCc----CCC---CcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE----YLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~----Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
++.+.|..+.+ + +.++.+.+++.+.+....... |.+ .....++++.+++++.. ++++|++
T Consensus 27 ~~~~yld~~~~----~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~- 93 (416)
T 1qz9_A 27 EGVIYLDGNSL----G--ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA------RDGEVVV- 93 (416)
T ss_dssp TTCEECCTTTS----C--CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC------CTTSEEE-
T ss_pred CCeEeecCCCc----C--CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC------CcccEEE-
Confidence 35777777654 3 336778888888775421110 111 24567888888888533 2678988
Q ss_pred ecCCchhHHHHHHHHHHHh----CCCCEE-EEcCCCCcchHHHH----hhC--CCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238 156 QGLSGTGSLRLAAALIERY----FPGAKV-LISSPTWGNHKNIF----NDA--RVPWSEYRYYDPKTVGLDFEGMIADIK 224 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~----~~gd~V-lv~~P~y~~~~~~~----~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~ 224 (467)
|+|+++++.++...+..+ .+||+| ++..++|+.+...+ +.. |++++.++. ++.+++.++
T Consensus 94 -~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~ 163 (416)
T 1qz9_A 94 -TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAID 163 (416)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCS
T ss_pred -eCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhC
Confidence 999999998763322123 789975 45556777654433 223 888887764 688888886
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCcc
Q 012238 225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK 304 (467)
Q Consensus 225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 304 (467)
++++++++++|+||||.+++ +++|.++|+++|+++|+|++|.... ...+ +..+ ...+++.|++|
T Consensus 164 ---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~---~~~~----~~d~~~~s~~K 227 (416)
T 1qz9_A 164 ---QDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGA---VPVD---LHQA----GADYAIGCTYK 227 (416)
T ss_dssp ---TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTT---SCCC---HHHH----TCSEEEECSSS
T ss_pred ---CCceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccccC---cCCC---hhhc----CCCEEEecCcc
Confidence 57889999999999999998 5677888999999999999986321 1111 2111 23478899999
Q ss_pred CcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc-----------------------cCccCCCchHHHHHH
Q 012238 305 NLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA-----------------------RPMYSNPPVHGARIV 360 (467)
Q Consensus 305 ~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~~ 360 (467)
.++ +|.|+ ||++ .++++++. ++... .....+++...+.++
T Consensus 228 ~l~-~g~~~~g~l~---~~~~~~~~------------l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 291 (416)
T 1qz9_A 228 YLN-GGPGSQAFVW---VSPQLCDL------------VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMV 291 (416)
T ss_dssp TTC-CCTTCCCEEE---ECTTTTTT------------SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHH
T ss_pred cCC-CCCCCeEEEE---ECHHHHhc------------cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHH
Confidence 985 67888 9996 55666554 32210 011223444444444
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCC----cceEEecCCC-HH-HHHHHHH
Q 012238 361 ANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQ----IGMFSFTGLN-KA-QSDNMTN 430 (467)
Q Consensus 361 ~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~----~g~f~~~~l~-~~-~~~~ll~ 430 (467)
..+|.... .+.++++.++++++++++.+.|+ ++ | +.+..+. .+.++|+.+. .+ +.+.+.
T Consensus 292 ~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~- 360 (416)
T 1qz9_A 292 ECGLDVFA-----QTDMASLRRKSLALTDLFIELVE-QRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALI- 360 (416)
T ss_dssp HHHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHH-HHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHH-
T ss_pred HHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHH-hhccCCC----eEEeCCCCHHHcCCEEEEecCCHHHHHHHHH-
Confidence 44442110 01256788889999999999998 75 4 4555543 2345666542 33 445554
Q ss_pred cccEEEeCC--C--eEEec--cCChhhHHHHHHHHHHHHHh
Q 012238 431 KWHVYMTKD--G--RISLA--GLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 431 ~~gI~v~~g--g--Ris~~--~~~~~~i~~~~~~l~~~l~~ 465 (467)
++||.+... + ||+++ ..+++++++++++|++++++
T Consensus 361 ~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 361 DRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp TTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 569998653 2 99987 45889999999999999865
No 155
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.94 E-value=1.3e-24 Score=220.60 Aligned_cols=328 Identities=12% Similarity=0.088 Sum_probs=210.5
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+...|||+.|... ....+.+|.+.+++.+.+..... ..| +.....++++.+++++. .+++++ ++|
T Consensus 64 G~~ylD~~~g~~~--~~lgh~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g--------~~~v~~--~~s 130 (433)
T 1z7d_A 64 DKRYYDFLSAYSS--VNQGHCHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLLG--------YDKVLM--MNT 130 (433)
T ss_dssp CCEEEESSHHHHT--TTTCBTCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred CCEEEEcccchhh--cccCCCCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhcC--------CCeEEE--eCC
Confidence 3478999988651 12332378899999888754321 123 44456788888888852 468988 999
Q ss_pred chhHHHHHHHHHHH-------hCCC-CEEEEcCCCCcchHH-HHhhCC------------CCeEEeeeecCCCCCCChhh
Q 012238 160 GTGSLRLAAALIER-------YFPG-AKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEG 218 (467)
Q Consensus 160 gt~al~l~~~~l~~-------~~~g-d~Vlv~~P~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~~ 218 (467)
|++|+.++..+... +.+| |+|++++|+|..+.. .+...| ..++.+|. .|++.
T Consensus 131 GseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~ 203 (433)
T 1z7d_A 131 GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEA 203 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHH
Confidence 99999998544321 1367 999999999987643 333333 23333332 38999
Q ss_pred HHHHHHcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEE
Q 012238 219 MIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297 (467)
Q Consensus 219 l~~~l~~~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (467)
+++.++. +++++++++..+|+||.+ ++.+.+++|.++|++||+++|+||+|.++...+. .... .......+++
T Consensus 204 le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~-~~~~~~~di~ 277 (433)
T 1z7d_A 204 LEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCV-HHYNVKPDVI 277 (433)
T ss_dssp HHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCSEE
T ss_pred HHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhh-HhcCCCCCEE
Confidence 9999952 466777766667789975 7888999999999999999999999987754321 1111 1112223433
Q ss_pred EEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHHH
Q 012238 298 VAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKAE 376 (467)
Q Consensus 298 ~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 376 (467)
||||.++ +| +|+||++ .++++++. +.........+.+.+++.++..+|+.. ++
T Consensus 278 ---t~sK~l~-~G~~~~G~v~---~~~~~~~~------------l~~~~~~~t~~~~~~~~aaa~aal~~~------~~- 331 (433)
T 1z7d_A 278 ---LLGKALS-GGHYPISAVL---ANDDIMLV------------IKPGEHGSTYGGNPLAASICVEALNVL------IN- 331 (433)
T ss_dssp ---EECGGGG-TTSSCCEEEE---ECHHHHTT------------CCTTCCCCTTTTCHHHHHHHHHHHHHH------HH-
T ss_pred ---EECcccc-CCCCCeEEEE---ECHHHHhh------------hccccccccCCCCHHHHHHHHHHHHHH------Hh-
Confidence 8999999 89 9999996 67777776 443322334456667777766665321 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC-----CH-HHHHHHHHcccEEEeCCC----eEEe
Q 012238 377 MEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL-----NK-AQSDNMTNKWHVYMTKDG----RISL 444 (467)
Q Consensus 377 l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l-----~~-~~~~~ll~~~gI~v~~gg----Ris~ 444 (467)
+...++++++++++.+.|+ ++ +.+. +....+. |.|+|+.+ +. ++.+.+++ +||.+.+++ ||++
T Consensus 332 -~~~~~~~~~~~~~l~~~L~-~l~~~~~~-~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~iRi~~ 406 (433)
T 1z7d_A 332 -EKLCENAEKLGGPFLENLK-RELKDSKI-VRDVRGK-GLLCAIEFKNELVNVLDICLKLKE-NGLITRDVHDKTIRLTP 406 (433)
T ss_dssp -TTHHHHHHHHHHHHHHHHH-HHHTTCTT-EEEEEEE-TTEEEEEECTTTCCHHHHHHHHHH-TTEECCEETTTEEEECC
T ss_pred -ccHHHHHHHHHHHHHHHHH-HHHHhCCC-eEEEEee-eeEEEEEEccChhHHHHHHHHHHH-CCeEEecCCCCEEEEEC
Confidence 1455667777888888887 65 4321 1223344 44555532 23 34566665 699999863 8876
Q ss_pred cc-CChhhHHHHHHHHHHHHHhc
Q 012238 445 AG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 445 ~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
+. .+++++++++++|+++++++
T Consensus 407 ~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 407 PLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHHH
Confidence 53 48899999999999998764
No 156
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.94 E-value=2.3e-24 Score=215.60 Aligned_cols=309 Identities=12% Similarity=0.015 Sum_probs=210.3
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (467)
++|+|+. | . .++.+.+++.+.+... .|.+..+..++|+++++++.. +++++ ++||+++
T Consensus 9 ~~i~~~~--p----~---~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a 66 (393)
T 1mdo_A 9 DFLPFSR--P----A---MGAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAG 66 (393)
T ss_dssp CCBCSCC--C----C---CCHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHH
T ss_pred cccccCC--C----C---CCHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhCC--------CcEEE--ecChHHH
Confidence 4677774 3 2 2567788888887653 244678899999999999743 36777 8999999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238 164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (467)
Q Consensus 164 l~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 242 (467)
+.++ +... +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++ +++++++++ |||
T Consensus 67 l~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~~~---~~~ 137 (393)
T 1mdo_A 67 MHIA--LMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAIT---PQTKAIIPV---HYA 137 (393)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC---TTEEEECCB---CGG
T ss_pred HHHH--HHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEecc-CCcCCCCHHHHHHhcC---CCceEEEEe---CCC
Confidence 9998 3434 5699999999999999999999999999999985 3457799999999987 467777754 589
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecC
Q 012238 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS 321 (467)
Q Consensus 243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~ 321 (467)
|...+ +++|.++|+++|+++|+|++|... .+.. ... .. .++++.||||..+++|.|+||++ +.
T Consensus 138 G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~---~~~------~~--~d~~~~S~~k~K~l~~~~~g~~~--~~ 201 (393)
T 1mdo_A 138 GAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKG---RHI------GA--RGTAIFSFHAIKNITCAEGGIVV--TD 201 (393)
T ss_dssp GCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT---EET------TS--SSEEEEECCTTSSSCSSSCEEEE--ES
T ss_pred CCcCC---HHHHHHHHHHcCCeEEEECccccCCeECC---eec------CC--CCeEEEeCCCCCccccccceEEE--eC
Confidence 99876 567778899999999999999853 3321 111 11 57889999944444556899995 44
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhhccCcc------------------------CCCchHHHHHHHHHhCChhhHHHHHHHH
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRLARPMY------------------------SNPPVHGARIVANVVGNPALFDEWKAEM 377 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~~~~~~~~L~~~~~~~~~~~~l 377 (467)
++++++. +........ ...+.+.+.++...+ +.+
T Consensus 202 ~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l----------~~~ 259 (393)
T 1mdo_A 202 NPQFADK------------LRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL----------QKL 259 (393)
T ss_dssp CHHHHHH------------HHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH----------HTH
T ss_pred CHHHHHH------------HHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH----------HHH
Confidence 5777776 332221100 112333333322222 224
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCccccc-C-----CcceEEecCC-------CHHHHHHHHHcccEEEeCC-----
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL-R-----QIGMFSFTGL-------NKAQSDNMTNKWHVYMTKD----- 439 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~-~-----~~g~f~~~~l-------~~~~~~~ll~~~gI~v~~g----- 439 (467)
++..++.+++++++.+.|+ +++ +++.. + .+++++|+.+ +.+.+.+.+.++||.+.++
T Consensus 260 ~~~~~~~~~~~~~l~~~L~-~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~ 334 (393)
T 1mdo_A 260 DALNARRAAIAAQYHQAMA-DLP----FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAH 334 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TSS----CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHh-cCC----cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccc
Confidence 4555666677888888888 765 23321 1 3444555533 4444444444569987763
Q ss_pred ---------------------C---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 440 ---------------------G---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 ---------------------g---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
. ||++. ..+++++++++++|+++++..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 335 TQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp GSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred cChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 1 66665 248899999999999998754
No 157
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=4.6e-25 Score=217.77 Aligned_cols=317 Identities=11% Similarity=0.030 Sum_probs=204.8
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--CCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+.++|.-|.. .+++.+.+++.+.+..+. ...+.+. .-..++++.+++++... ++++|++ |+|
T Consensus 4 ~~~~~~p~p~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~v~~--~~g 69 (362)
T 3ffr_A 4 NKIYFTPGPS-------ELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-----SNYEVLF--LAS 69 (362)
T ss_dssp CCEEECSSSC-------CCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-----TTEEEEE--ESC
T ss_pred cceeccCCCc-------CCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-----CCcEEEE--eCC
Confidence 4577775422 236777777766664432 0111111 22456666677764332 2568888 999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCc-chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCC
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p 238 (467)
|++++.++ +.....+ +.+++..|.|. .+...++..|++++.++. +.++.+|++.++ ++ ++++++++++|
T Consensus 70 ~t~al~~~--~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~--~~---~~~~~v~~~~~ 139 (362)
T 3ffr_A 70 ATEIWERI--IQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEA--AFGKGFYPADIT--VP---ADAEIICLTHN 139 (362)
T ss_dssp HHHHHHHH--HHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCGGGCC--CC---TTCCEEEEESE
T ss_pred chHHHHHH--HHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec--CCCCCCCHHHHh--cc---CCccEEEEEcC
Confidence 99999998 4444556 55556666666 234577788999999988 345789999998 33 67889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhc-CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceE
Q 012238 239 HNPTGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAM 316 (467)
Q Consensus 239 ~NPTG~~~~~~~l~~l~~~~~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~ 316 (467)
+||||.+++.+ +|+++|++| |+++|+|++|...... .+. ....+++.|+||.++ ++|+ |++
T Consensus 140 ~nptG~~~~l~---~i~~la~~~p~~~li~D~a~~~~~~~---~~~---------~~~d~~~~s~~K~~~~~~G~--g~~ 202 (362)
T 3ffr_A 140 ETSSGVSMPVE---DINTFRDKNKDALIFVDAVSSLPYPK---FDW---------TKIDSVFFSVQKCFGLPAGL--GVW 202 (362)
T ss_dssp ETTTTEECCHH---HHTTSGGGSTTSEEEEECTTTTTSSC---CCT---------TSCSEEEEETTSTTCCCSCC--EEE
T ss_pred CCCcceeCCHH---HHHHHHHhCCCCEEEEecccccCCcc---cCh---------hHCcEEEEecccccCCCCce--EEE
Confidence 99999999955 677779999 9999999997754422 111 013488999999999 7884 666
Q ss_pred EEecCCHHHHhhhhhhhHHHHHHHH----------------HhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHH
Q 012238 317 NVVCSSSDLAARCCEVAVIQVKSQL----------------KRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEM 379 (467)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~~l----------------~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~ 379 (467)
+ .++++++. +.... ....... ..+++...+.++..++.. +. ...+++
T Consensus 203 ~---~~~~~~~~--------~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~---~~~~~~ 266 (362)
T 3ffr_A 203 I---LNDRVIEK--------SKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGD--ML---QISADG 266 (362)
T ss_dssp E---EEHHHHHH--------HHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--HH---HHCHHH
T ss_pred E---ECHHHHHH--------hhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHH--HH---HccHHH
Confidence 4 56677665 22111 0001111 234555555454444421 10 112677
Q ss_pred HHHHHHHHHHHHHHHhhhcc-CCCCCcccccC----CcceEEecCC--CHH-HHHHHHHcccEEEeCC------C--eEE
Q 012238 380 MAGRIKNVRQKLFDSLSAKD-KSGKDWSFILR----QIGMFSFTGL--NKA-QSDNMTNKWHVYMTKD------G--RIS 443 (467)
Q Consensus 380 ~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~----~~g~f~~~~l--~~~-~~~~ll~~~gI~v~~g------g--Ris 443 (467)
+.++++++++++.+.|+ ++ | ++...+ ..+.++|+.+ +.+ +.+.+.+ +||.+.+| + |||
T Consensus 267 ~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~g~~~~~~~~iRis 340 (362)
T 3ffr_A 267 IRKQTEEKAALINTYIE-SSKV----FSFGVEDAKLRSMTTIVANTTMLPGEINKILEP-FDMAVGAGYGSKKETQIRIA 340 (362)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSS----EEESSSCGGGBCSSEEEEEESSCHHHHHHHHGG-GTEEEEECSGGGTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHH-HccC----ceeccCChhhcCCceEEEecCCCHHHHHHHHHH-CCeEEecCccccCCCEEEEE
Confidence 88889999999999998 76 4 454442 2233444422 444 4555555 59999976 2 999
Q ss_pred eccC-ChhhHHHHHHHHHHHH
Q 012238 444 LAGL-SLAKCEYLADAIIDSY 463 (467)
Q Consensus 444 ~~~~-~~~~i~~~~~~l~~~l 463 (467)
++.. +++++++++++|++++
T Consensus 341 ~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 341 NFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp CCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 8743 7799999999998864
No 158
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.94 E-value=9.4e-25 Score=222.64 Aligned_cols=338 Identities=11% Similarity=0.051 Sum_probs=213.0
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--C-cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--K-EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~-~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
...+|++.|.+-..-++ .++.+.+++.+.+..... . .| +.....++++.+++++. .++++|++ |+|
T Consensus 50 ~~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~------~~~~~v~~--~~g 118 (449)
T 3a8u_X 50 RKVYDSLSGLWTCGAGH--TRKEIQEAVAKQLSTLDYSPGFQY-GHPLSFQLAEKITDLTP------GNLNHVFF--TDS 118 (449)
T ss_dssp CEEEETTHHHHTCTTCB--SCHHHHHHHHHHTTTCSCCCSSSC-CCHHHHHHHHHHHTTSS------TTEEEEEE--ESS
T ss_pred CEEEECCccHhhccCCC--CCHHHHHHHHHHHHhCCCcccccc-CCHHHHHHHHHHHHhCC------CCCCEEEE--cCc
Confidence 46789987764222232 268899999888754210 1 23 22233455555555421 13678999 999
Q ss_pred chhHHHHHHHHHHHhC------CCCEEEEcCCCCcchH-HHHhhCCC------------CeEEeeeecC--CC-CCCC--
Q 012238 160 GTGSLRLAAALIERYF------PGAKVLISSPTWGNHK-NIFNDARV------------PWSEYRYYDP--KT-VGLD-- 215 (467)
Q Consensus 160 gt~al~l~~~~l~~~~------~gd~Vlv~~P~y~~~~-~~~~~~G~------------~~~~v~~~~~--~~-~~~d-- 215 (467)
|++|++++...+..+. +||+|++.+|+|..+. ..+...|. .+..++.... .. .++|
T Consensus 119 gsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~ 198 (449)
T 3a8u_X 119 GSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPK 198 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChH
Confidence 9999999844432211 6799999999998764 34544442 2344443111 01 1356
Q ss_pred ------hhhHHHHHHcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238 216 ------FEGMIADIKAAP-GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287 (467)
Q Consensus 216 ------~~~l~~~l~~~~-~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~ 287 (467)
++.+++.+++.. +++++++++..+||||. ..+.+++++|.++|++||+++|+||+|.+|...+ ......
T Consensus 199 ~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g---~~~~~~ 275 (449)
T 3a8u_X 199 EGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG---SMFGAD 275 (449)
T ss_dssp SSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC---cchhhh
Confidence 899999987422 24556655544578997 6679999999999999999999999998875432 111222
Q ss_pred HHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---------ccCccCCCchHHH
Q 012238 288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---------ARPMYSNPPVHGA 357 (467)
Q Consensus 288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~ 357 (467)
......+++ ||||.++ .| +|+||++ .++++++. +... ......+.+.+++
T Consensus 276 -~~~~~~di~---s~sK~l~-~G~~~~G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~t~~~~~~~~ 335 (449)
T 3a8u_X 276 -SFGVTPDLM---CIAKQVT-NGAIPMGAVI---ASTEIYQT------------FMNQPTPEYAVEFPHGYTYSAHPVAC 335 (449)
T ss_dssp -HHTCCCSEE---EECGGGG-TTSSCCEEEE---EEHHHHHH------------HHTCSSCTTSCSSCCCCTTTTCHHHH
T ss_pred -hcCCCCCEE---EEccccc-CCCCceEEEE---ECHHHHHH------------hhccCcccccccccccCCCcccHHHH
Confidence 222223433 8899998 58 9999985 56677776 5442 1122335566777
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCCC-----H-----HHHH
Q 012238 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGLN-----K-----AQSD 426 (467)
Q Consensus 358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l~-----~-----~~~~ 426 (467)
.++..+|+.. ++ +...++++++++++.+.|+ +++ ++. +....+ .|.|+|+.+. . ++.+
T Consensus 336 aa~~aal~~~------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~ 404 (449)
T 3a8u_X 336 AAGLAALCLL------QK--ENLVQSVAEVAPHFEKALH-GIKGAKN-VIDIRN-FGLAGAIQIAPRDGDAIVRPFEAGM 404 (449)
T ss_dssp HHHHHHHHHH------HH--TTHHHHHHHHHHHHHHHHH-TTTTSTT-EEEEEE-ETTEEEEEECCBTTBSSHHHHHHHH
T ss_pred HHHHHHHHHH------Hh--cCHHHHHHHHHHHHHHHHH-HHhcCCC-eEEEee-eEEEEEEEEecCcccccccHHHHHH
Confidence 6666665321 11 2456677788888888887 643 211 112233 3556665431 1 4566
Q ss_pred HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+++ +||.+.++| ||++. ..+++++++++++|+++++++
T Consensus 405 ~l~~-~Gv~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 405 ALWK-AGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp HHHH-HTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-CCcEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 6665 599999875 88854 348899999999999998764
No 159
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.93 E-value=1e-25 Score=229.98 Aligned_cols=230 Identities=13% Similarity=0.085 Sum_probs=157.3
Q ss_pred CcEEecCc-ccCCCCCCCCchHHHHHHHHHH---HhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 84 KKLNLGVG-AYRTEELQPYVLDVVKKAENLM---LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 84 ~~i~l~~G-~~~d~~~~p~~~~~v~~a~~~~---~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
++|+|++| ++ ..+. ++.+.++.... ........|. ..|.+ +++++++++....| .+++++ +.|
T Consensus 90 ~~i~l~~g~~~----~~~~-~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g----~~~~i~--~~s 156 (464)
T 1ibj_A 90 LLVNLDNKFDP----FDAM-STPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDK----ADRAFC--FTS 156 (464)
T ss_dssp HHTCCCCSSCT----TCCS-SCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHT----CSEEEE--ESS
T ss_pred eEEECCCCCCC----CCCC-CccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhC----CCeEEE--ECC
Confidence 68899987 44 2232 33344443321 1112235564 34544 45555555443323 236666 688
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
|++++.++ +..+.+||+|+++.|+|..+... ++..|++++.++. .|++.+++.++ ++++++++
T Consensus 157 Gt~al~~~---l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~-------~d~~~l~~~i~---~~tk~v~l 223 (464)
T 1ibj_A 157 GMAALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-------TKLDEVAAAIG---PQTKLVWL 223 (464)
T ss_dssp HHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------TSHHHHHHHCC---SSEEEEEE
T ss_pred HHHHHHHH---HHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHHhc---cCceEEEE
Confidence 89999876 34567999999999999988764 5678999988876 28899999887 57899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc-CCCccc
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIG 314 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG 314 (467)
++|+||||.+++ +++|+++|++||+++|+||+|...... . ++ + .+.++++.|+||.++. .|+|+|
T Consensus 224 ~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~~----~--~~----~-~~~div~~S~sK~~~g~~Gl~~G 289 (464)
T 1ibj_A 224 ESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS----R--PL----E-LGADIVMHSATKFIAGHSDVMAG 289 (464)
T ss_dssp CSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC----C--GG----G-TTCSEEEEETTTTTTCSSCCCCE
T ss_pred eCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcccccC----C--hh----h-cCCEEEEECCcccccCCCCCcEE
Confidence 999999999996 568888899999999999998753211 1 11 1 2468999999998864 499999
Q ss_pred eEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCCh
Q 012238 315 AMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNP 367 (467)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ 367 (467)
|++ +.++++++. +.........+.+.+.+.++...|.+.
T Consensus 290 ~l~--~~~~~l~~~------------l~~~~~~~g~~~~~~~~~a~~~al~~~ 328 (464)
T 1ibj_A 290 VLA--VKGEKLAKE------------VYFLQNSEGSGLAPFDCWLCLRGIKTM 328 (464)
T ss_dssp EEE--ECSHHHHHH------------HHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred EEE--EChHHHHHH------------HHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence 996 454677776 444433233455677777777777653
No 160
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.93 E-value=1.1e-24 Score=219.66 Aligned_cols=323 Identities=16% Similarity=0.150 Sum_probs=200.2
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcchHHHHH----HHHHHHhCCCCcccccCcee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNK----VTAELLFGADNSVLKEQRVA 153 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr~----aia~~l~~~~~~~~~~~~i~ 153 (467)
+.|+|..+.. +. ++.+.+++.+.+.......|. ......++++ .+++++.. ++++|+
T Consensus 26 ~~i~l~~~~~------~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~ 92 (417)
T 3n0l_A 26 EGLEMIASEN------FT-LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC------KFANVQ 92 (417)
T ss_dssp HSEECCTTCC------CC-CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC------SEEECC
T ss_pred cCeeeecccC------CC-CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC------CCcceE
Confidence 5688865433 22 788999988876433222332 2233444544 56666432 255677
Q ss_pred eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS 230 (467)
Q Consensus 154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 230 (467)
+ ++| ++++.++ +...+.+||+|+++.|+|..+.. .+...|..+..+++..++++.+|++.+++.+++ .++
T Consensus 93 ~--~sG-t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~--~~~ 165 (417)
T 3n0l_A 93 P--NSG-SQANQGV--YAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK--EKP 165 (417)
T ss_dssp C--SSH-HHHHHHH--HHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH--HCC
T ss_pred e--ccH-HHHHHHH--HHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh--cCC
Confidence 7 666 8999998 44457799999999999987654 444445544444433235677999999999974 245
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC
Q 012238 231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY 309 (467)
Q Consensus 231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 309 (467)
+++++++|+| |..++ +++|.++|++||+++|+||++. ++.+.+. ....+ ....+++.|+||.+ +
T Consensus 166 ~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~------~~~di~~~s~sK~l--~ 230 (417)
T 3n0l_A 166 KLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGE--HPSPF------PYAHVVSSTTHKTL--R 230 (417)
T ss_dssp SEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCCT------TTCSEEEEESSTTT--C
T ss_pred eEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhccc--CCCcc------ccceEEEeeCcccc--C
Confidence 6777788886 77777 6688888999999999999953 3322211 00000 12358899999987 7
Q ss_pred CCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238 310 AERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 388 (467)
Q Consensus 310 G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r 388 (467)
|+|.||++ +.++++++. +......... +++...+.++..++.. .+.+++++.++++++++
T Consensus 231 g~~~G~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~aa~~~a~~~-----~~~~~~~~~~~~~~~~~ 291 (417)
T 3n0l_A 231 GPRGGIIM--TNDEELAKK------------INSAIFPGIQGGPLMHVIAAKAVGFKF-----NLSDEWKVYAKQVRTNA 291 (417)
T ss_dssp SCSCEEEE--ESCHHHHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHH-----HTSHHHHHHHHHHHHHH
T ss_pred CCCeeEEE--ECCHHHHHH------------HhhhhCCcccCCcHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHH
Confidence 89999996 444777776 4444333222 3333333333322211 11234567888888899
Q ss_pred HHHHHHhhhccCCCCCccccc-CCcceEEecC-----CCHHHHHHHHHcccEEEeCC-------------C-eEEecc--
Q 012238 389 QKLFDSLSAKDKSGKDWSFIL-RQIGMFSFTG-----LNKAQSDNMTNKWHVYMTKD-------------G-RISLAG-- 446 (467)
Q Consensus 389 ~~l~~~l~~~~g~~~~~~~~~-~~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~g-------------g-Ris~~~-- 446 (467)
+++.+.|+ +.| +.+.. +..+.++|+. ++.+.+.++++++||.+.++ + ||++..
T Consensus 292 ~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~ 366 (417)
T 3n0l_A 292 QVLANVLM-DRK----FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALT 366 (417)
T ss_dssp HHHHHHHH-HTT----CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHH
T ss_pred HHHHHHHH-hCC----ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHh
Confidence 99999998 765 44443 2334455553 35667777777789998743 1 777542
Q ss_pred ---CChhhHHHHHHHHHHHHHh
Q 012238 447 ---LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 447 ---~~~~~i~~~~~~l~~~l~~ 465 (467)
++++++++++++|++++++
T Consensus 367 ~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 367 ARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHHHHHHHHhc
Confidence 4679999999999999864
No 161
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.93 E-value=7.2e-25 Score=223.81 Aligned_cols=338 Identities=12% Similarity=0.034 Sum_probs=219.2
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCC--cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~--~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.|||..|...+.-|. .+|.+.+++.+.+...... .+.+.....+|++.+++++.. ..++|++ ++||+
T Consensus 76 ~ylD~~s~~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~------~~~~v~~--~~sGs 145 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGH--GHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPA------GLDTVFF--SDSGS 145 (457)
T ss_dssp EEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSST------TEEEEEE--ESSHH
T ss_pred EEEECCCcHhhhccCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCC------CcCEEEE--eCcHH
Confidence 7899998854233343 3788899888877542111 222455567788888887421 1568988 99999
Q ss_pred hHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHHhhCC--------------CCeEEeeeecCCCCCCChhhHHH
Q 012238 162 GSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIFNDAR--------------VPWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 162 ~al~l~~~~l~~~-----~~g-d~Vlv~~P~y~~~~~~~~~~G--------------~~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
+|++++.++.... .+| ++|++.+|+|..+.......+ ..+..++.........|++.|++
T Consensus 146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~ 225 (457)
T 3tfu_A 146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA 225 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHH
Confidence 9999985443222 044 589999999977654444332 13333333211112248899999
Q ss_pred HHHcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEE
Q 012238 222 DIKAAPGGSFILLHGC-AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299 (467)
Q Consensus 222 ~l~~~~~~~~~i~i~~-p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (467)
.+++.+++++++++.+ ++||+|.++ +.+.+++|.++|++||+++|+||+|.+|...+. .+.. ......++++
T Consensus 226 ~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~---~~a~-~~~~~~pdii-- 299 (457)
T 3tfu_A 226 QLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA---LFAA-DHAGVSPDIM-- 299 (457)
T ss_dssp HHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTH-HHHTCCCSEE--
T ss_pred HHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc---hhHh-HhcCCCceEE--
Confidence 9875435677788787 899999876 778899999999999999999999998865321 1122 1223334444
Q ss_pred ecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh-----ccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238 300 QSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL-----ARPMYSNPPVHGARIVANVVGNPALFDEW 373 (467)
Q Consensus 300 ~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 373 (467)
+|||.++ .| +|+||++ +++++++. +... ....+.+.+.+++.++..+|+..
T Consensus 300 -t~sK~l~-gG~~~lG~v~---~~~~i~~~------------~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~------ 356 (457)
T 3tfu_A 300 -CVGKALT-GGYLSLAATL---CTADVAHT------------ISAGAAGALMHGPTFMANPLACAVSVASVELL------ 356 (457)
T ss_dssp -EECGGGG-TTSSCCEEEE---EEHHHHHH------------HHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHH------
T ss_pred -EEChhhh-CCCcceEEEE---EcHHHHHH------------hhccCCCceeEecCCCcCHHHHHHHHHHHHHH------
Confidence 8899887 45 7999995 77877776 5311 12223456777777776665311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC----C-HHHHHHHHHcccEEEeCCC---eEEe
Q 012238 374 KAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL----N-KAQSDNMTNKWHVYMTKDG---RISL 444 (467)
Q Consensus 374 ~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l----~-~~~~~~ll~~~gI~v~~gg---Ris~ 444 (467)
++ +...++++++++++.+.|+ ++. .+. +....+.|. |+++.+ + .++.+.+++ +||.+.+.| ||+.
T Consensus 357 ~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-v~~vr~~G~-~~~i~l~~~~~~~~~~~~l~~-~Gv~v~~~~~~lRi~p 430 (457)
T 3tfu_A 357 LG--QDWRTRITELAAGLTAGLD-TARALPA-VTDVRVCGA-IGVIECDRPVDLAVATPAALD-RGVWLRPFRNLVYAMP 430 (457)
T ss_dssp HT--SCHHHHHHHHHHHHHHHHG-GGGGSTT-EEEEEECSS-CEEEEESSCCCHHHHHHHHHH-TTEECCCBTTEEEECC
T ss_pred hh--hHHHHHHHHHHHHHHHHHH-HHhcCCC-eeeeecCCe-EEEEEECCcccHHHHHHHHHH-CCeEEEecCCEEEEEC
Confidence 00 2345666667777777777 552 221 333344544 544432 2 345666666 599999987 7774
Q ss_pred c-cCChhhHHHHHHHHHHHHHhc
Q 012238 445 A-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 445 ~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
. ..+++++++++++|+++++++
T Consensus 431 ~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 431 PYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 3 238899999999999998865
No 162
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=1.5e-24 Score=215.53 Aligned_cols=312 Identities=13% Similarity=0.054 Sum_probs=210.2
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhH
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS 163 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a 163 (467)
+.+||+.|.| . ..+ +.+++.+.+... .|.+..+..++|+++++++.. +++++ +.||++|
T Consensus 7 ~~~~l~~~~~----~---~~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a 65 (374)
T 3uwc_A 7 PYSYLERQFA----D---IEP-YLNDLREFIKTA---DFTLGAELEKFEKRFAALHNA--------PHAIG--VGTGTDA 65 (374)
T ss_dssp CSCCHHHHTS----S---CHH-HHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHH
T ss_pred eeeccccCCC----C---chH-HHHHHHHHHHcC---CcccChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHH
Confidence 5788888766 2 244 888888877553 477888999999999999643 26666 8999999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC
Q 012238 164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT 242 (467)
Q Consensus 164 l~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT 242 (467)
+.++ +... +.+||+|+++.|+|..+...++..|++++.++.+ +++.+|++.+++.++ +++++++ |+|||
T Consensus 66 ~~~~--~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~---~~~~~v~---~~n~~ 135 (374)
T 3uwc_A 66 LAMS--FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAIT---DKTKAIM---PVHYT 135 (374)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCC---TTEEEEC---CBCGG
T ss_pred HHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCC---CCceEEE---EeCCc
Confidence 9987 4444 5699999999999999999999999999999984 567899999999886 4666666 89999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEec
Q 012238 243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVC 320 (467)
Q Consensus 243 G~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~ 320 (467)
|...+ +++|.++|+++|+++|+|++|..+..-+ .... .. ...+++.|+| |.++.+|. .|+++ +
T Consensus 136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~--~~~~------~~-~~d~~~~s~~~~K~l~~~g~-~g~~~--~ 200 (374)
T 3uwc_A 136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRIN--DKFV------GS-WGQFACFSLHPLKNLNVWSD-AGVII--T 200 (374)
T ss_dssp GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEET--TEET------TS-SSSEEEEECSSSSSSCCSSC-CEEEE--E
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeC--Ceec------cc-cccEEEEeCCCCCcCCccce-eEEEE--e
Confidence 99887 5577777999999999999987643211 0111 00 1246778866 99986576 77774 5
Q ss_pred CCHHHHhhhhhhhHHHHHHHHHhhccC------------ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238 321 SSSDLAARCCEVAVIQVKSQLKRLARP------------MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 388 (467)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r 388 (467)
.++++.+. +...... .......+.+.+....+ +.+++..++.++++
T Consensus 201 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~ 258 (374)
T 3uwc_A 201 HSDEYAEK------------LRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM----------NQLETITEKRRGIA 258 (374)
T ss_dssp SCHHHHHH------------HHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG----------GGHHHHHHHHHHHH
T ss_pred CCHHHHHH------------HHHHHhcCccccCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 67777665 3333211 01112333322222111 12445666777778
Q ss_pred HHHHHHhhhccCCCCCcccc-cCCcceEEec-----CCCHHHHHHHHHcccEEEeCCC----------------------
Q 012238 389 QKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT-----GLNKAQSDNMTNKWHVYMTKDG---------------------- 440 (467)
Q Consensus 389 ~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~~-----~l~~~~~~~ll~~~gI~v~~gg---------------------- 440 (467)
+.+.+.|+ +++. .+... .+.++.+.|. ..+.+.+.+.+.++||.+.++.
T Consensus 259 ~~l~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (374)
T 3uwc_A 259 HLYDQSFV-DLSE--FIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPM 335 (374)
T ss_dssp HHHHHHTG-GGTT--TEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHH
T ss_pred HHHHHHhc-cCCC--eEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCcc
Confidence 88888888 6640 01221 1222222221 1244444444555699887651
Q ss_pred ---------eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 441 ---------RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 ---------Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
||++.. .+++++++++++|++++++.
T Consensus 336 ~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 336 AEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 565443 47899999999999998753
No 163
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.93 E-value=6.6e-25 Score=223.78 Aligned_cols=341 Identities=11% Similarity=-0.010 Sum_probs=199.4
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.||++.|.+...-|. .+|.|.+++.+.+.... .|.+..+..+.+.++++++....+ ...++|++ |+||+
T Consensus 43 g~~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~sGs 114 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGH--RKKELDDAIKKQLGKIA--HSTLLGMTNVPATQLAETLIDISP--KKLTRVFY--SDSGA 114 (448)
T ss_dssp SCEEEETTHHHHTCSSCB--SCHHHHHHHHHHHTTCS--CCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEE--ESSHH
T ss_pred CCEEEECCcchhhccCCC--CCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCchH
Confidence 357899998865333343 36889999988876531 222333334445555555443322 12468998 99999
Q ss_pred hHHHHHHHHHHHh--CC----CCEEEEcCCCCcchHHHHhhCCC-------------CeEEeeeecCCCCCC--------
Q 012238 162 GSLRLAAALIERY--FP----GAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGL-------- 214 (467)
Q Consensus 162 ~al~l~~~~l~~~--~~----gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~-------- 214 (467)
+|+..+.++.... .+ +|+|++++|+|..+.......+. .+..++. +..+..
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 192 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDEC 192 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhh
Confidence 9999985443322 04 49999999999876544333222 2233333 222222
Q ss_pred ---ChhhHHHHHHcCCCCcEEEEeCCCC-CCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHH
Q 012238 215 ---DFEGMIADIKAAPGGSFILLHGCAH-NPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289 (467)
Q Consensus 215 ---d~~~l~~~l~~~~~~~~~i~i~~p~-NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 289 (467)
|++.|++.++..+.++.++++...+ |++|. +++.+.+++|.++|++||+++|+||+|.+|...+. .... ..
T Consensus 193 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a~-~~ 268 (448)
T 3dod_A 193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFAC-EH 268 (448)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGG-GG
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhhh-hh
Confidence 4788999887322455666666666 88884 56788899999999999999999999998864321 1111 11
Q ss_pred HhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHh-------hccCccCCCchHHHHHHH
Q 012238 290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR-------LARPMYSNPPVHGARIVA 361 (467)
Q Consensus 290 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~ 361 (467)
.....+ +.+|||.++ .| +|+||++ +++++++. +.. .....+.+.+.+++.++.
T Consensus 269 ~~~~~d---i~t~sK~l~-~G~~~ig~v~---~~~~~~~~------------~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 329 (448)
T 3dod_A 269 ENVQPD---LMAAGKGIT-GGYLPIAVTF---ATEDIYKA------------FYDDYENLKTFFHGHSYTGNQLGCAVAL 329 (448)
T ss_dssp GTCCCS---EEEECGGGG-TTSSCCEEEE---EEHHHHHT------------TCSCGGGCCCCCCCCTTTTCHHHHHHHH
T ss_pred cCCCCC---EEEeccccc-CCcCceEEEE---ECHHHHHH------------hhhccccCCcccccCCCCcCHHHHHHHH
Confidence 122223 336899998 59 5999995 77887776 543 222334466777777777
Q ss_pred HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC--C--------------HHHH
Q 012238 362 NVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL--N--------------KAQS 425 (467)
Q Consensus 362 ~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~--------------~~~~ 425 (467)
.+|+... + ++.++..++..+..++.+.+ +. .++. +....+.| .|+|+.+ + .++.
T Consensus 330 aal~~~~--~--~~~~~~~~~~~~~~~~~l~~-l~-~~~~---~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (448)
T 3dod_A 330 ENLALFE--S--ENIVEQVAEKSKKLHFLLQD-LH-ALPH---VGDIRQLG-FMCGAELVRSKETKEPYPADRRIGYKVS 399 (448)
T ss_dssp HHHHHHH--H--TTHHHHHHHHHHHHHHHHHH-HT-TSTT---EEEEEEET-TEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred HHHHHHh--c--ccHHHHHHHHHHHHHHHHHH-Hh-cCCC---eEEEEeee-EEEEEEEccCcccccccchhhHHHHHHH
Confidence 7664210 0 11123333333344444444 43 3321 22333344 4555422 1 3456
Q ss_pred HHHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 426 DNMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 426 ~~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+.+++ +||.+.|+| ||+.. ..+++++++++++|+++++++
T Consensus 400 ~~l~~-~Gv~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 400 LKMRE-LGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp HHHHH-TTEECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-CCcEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 66666 599999986 77433 238899999999999998754
No 164
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.93 E-value=2.3e-25 Score=220.05 Aligned_cols=286 Identities=12% Similarity=-0.015 Sum_probs=185.5
Q ss_pred CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCC--EEEEcCCCCcchHH---HH
Q 012238 120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--KVLISSPTWGNHKN---IF 194 (467)
Q Consensus 120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd--~Vlv~~P~y~~~~~---~~ 194 (467)
..|.+..+..+|++++++++.. +.. ++ +.||++++.++ +.....+|| .|+++.++|..+.. ..
T Consensus 41 ~~y~~~~~~~~l~~~la~~~~~-------~~~-i~--~~~G~~a~~~a--l~~~~~~gd~~~vi~~~~~~~~~~~~~~~~ 108 (357)
T 3lws_A 41 DQYGTGAIIEPFEQKFADVLGM-------DDA-VF--FPSGTMAQQVA--LRIWSDETDNRTVAYHPLCHLEIHEQDGLK 108 (357)
T ss_dssp EETTEETTHHHHHHHHHHHHTC-------SEE-EE--ESCHHHHHHHH--HHHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred ccccCChHHHHHHHHHHHHhCC-------CcE-EE--ecCcHHHHHHH--HHHHhhcCCCcEEEecccceeeeeccchhh
Confidence 5687778899999999999643 223 34 47788888876 444456777 67766666443222 34
Q ss_pred hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC
Q 012238 195 NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG 273 (467)
Q Consensus 195 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~ 273 (467)
...|++++.++. +++.+|++.+++.. . ++++++++||||| |.+++.+++++|+++|++||+++|+|++|..
T Consensus 109 ~~~g~~~~~v~~---~~~~~d~~~l~~~~----~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 180 (357)
T 3lws_A 109 ELHPIETILVGA---ADRLMTLDEIKALP----D-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF 180 (357)
T ss_dssp HHSSCEEEECSC---TTSCCCHHHHHTCC----S-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred hccCcEEEEecC---CCCCcCHHHHhcCc----C-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence 566888888774 34579999988762 2 6788999999998 9999999999999999999999999999752
Q ss_pred C--CCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccC-
Q 012238 274 F--ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYS- 350 (467)
Q Consensus 274 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 350 (467)
. .+.. .. ...+.... + +++.|+||.++.++. ||++ +++++++. +.........
T Consensus 181 ~~~~~~~--~~---~~~~~~~~-d-~~~~s~sK~~~~~~g--g~~~---~~~~~~~~------------~~~~~~~~~~~ 236 (357)
T 3lws_A 181 EMLPYYE--KT---AAEIAGLF-D-SIYISFYKGLGGIAG--AILA---GPAAFCQT------------ARIWKRRYGGD 236 (357)
T ss_dssp HHHHHHT--CC---HHHHHTTS-S-EEEEESSSTTCCSSC--EEEE---ECHHHHHH------------HHHHHHHTTCC
T ss_pred hhhhhcC--CC---hHHHHhcC-C-EEEEeccccCCCCce--EEEE---cCHHHHHH------------HHHHHHHhcCC
Confidence 1 1110 11 11222222 2 347899999943332 8874 78888877 4333222111
Q ss_pred -CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc-ccCCcceEEecCC--C----H
Q 012238 351 -NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSF-ILRQIGMFSFTGL--N----K 422 (467)
Q Consensus 351 -~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~-~~~~~g~f~~~~l--~----~ 422 (467)
..+...+.++...|.+ | .+. .+++.++++++.+.|+ +++ ++++ ..+.+++|+|+.+ . .
T Consensus 237 ~~~~~~~~~~~~~~l~~------~---~~~-~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (357)
T 3lws_A 237 LISLYPYIVSADYYYEL------R---KDR-MGQYYEQAKQLAEQFN-ALP---GVHTTPEVPVSNMFHLHFDGQAADIS 302 (357)
T ss_dssp CSCCHHHHHHHHHHHHH------H---TTC-HHHHHHHHHHHHHHHH-TST---TEEEESSSCSSSEEEEEEESCHHHHH
T ss_pred cccchHHHHHHHHHHHH------H---HHH-HHHHHHHHHHHHHHHH-hCC---CCeeccCCCcceEEEEEecCChHHHH
Confidence 1122222232222221 1 222 2345677888999998 762 1565 3456677888754 2 2
Q ss_pred HHHHHHHHcccEEEeCC-----C----eEEecc----CChhhHHHHHHHHHHHH
Q 012238 423 AQSDNMTNKWHVYMTKD-----G----RISLAG----LSLAKCEYLADAIIDSY 463 (467)
Q Consensus 423 ~~~~~ll~~~gI~v~~g-----g----Ris~~~----~~~~~i~~~~~~l~~~l 463 (467)
+.+.+.+.++||.+.+| | |++++. .+.+++++++++|.+++
T Consensus 303 ~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 303 PKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 34445555679999987 2 787663 36788888888888765
No 165
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.93 E-value=1.1e-25 Score=222.30 Aligned_cols=302 Identities=13% Similarity=-0.007 Sum_probs=193.7
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCE--
Q 012238 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-- 179 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~-- 179 (467)
++|.+.+++.+.+. ...|.+..+..++++++++++... ..++ ++||++++.++ +...+.+||+
T Consensus 27 ~~p~v~~ai~~~~~---~~~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~~g~~a~~~a--~~~~~~~g~~~v 91 (359)
T 3pj0_A 27 VLTEALQNIDDNLE---SDIYGNGAVIEDFETKIAKILGKQ--------SAVF--FPSGTMAQQIA--LRIWADRKENRR 91 (359)
T ss_dssp HHHHHTTTSCTTCB---CCBTTBSHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH--HHHHHHHHTCCE
T ss_pred CCHHHHHHHHhhcc---cCcccCCHHHHHHHHHHHHHhCCC--------cEEE--eCCHHHHHHHH--HHHHHhcCCCcE
Confidence 36778877766432 256778889999999999996432 2244 57888999887 4444557776
Q ss_pred EEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHH
Q 012238 180 VLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIA 255 (467)
Q Consensus 180 Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPT-G~~~~~~~l~~l~ 255 (467)
|+++.++|..+. ......|++++.++. +++.+|++.+++. . ++++++++++||||| |.+++.+++++|+
T Consensus 92 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~ 164 (359)
T 3pj0_A 92 VAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKIS 164 (359)
T ss_dssp EEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred EEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHH
Confidence 555545543221 122456999888876 2468999999887 3 567889999999998 7999999999999
Q ss_pred HHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238 256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI 335 (467)
Q Consensus 256 ~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~ 335 (467)
++|++||++||+|++|..+........ ...+. ...+ +++.|+||.++.++. ||+ ++++++++.
T Consensus 165 ~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~-~~~d-~~~~s~sK~~~~~~g--g~~---~~~~~l~~~------- 227 (359)
T 3pj0_A 165 EYCHEQGISLHLDGARLWEITPFYQKS---AEEIC-ALFD-SVYVSFYKGIGGIAG--AIL---AGNDDFVQE------- 227 (359)
T ss_dssp HHHHHHTCEEEEEETTCGGGHHHHTCC---HHHHH-TTCS-EEEEESSSTTCCSSC--EEE---EECHHHHHH-------
T ss_pred HHHHHcCCEEEEECcchhcchhhhCCC---HHHhh-ccCC-EEEEeccccCCCcce--EEE---ECCHHHHHH-------
Confidence 999999999999999765431100011 11222 2223 456699999886632 565 478888887
Q ss_pred HHHHHHHhhccCcc--CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccc-cCC
Q 012238 336 QVKSQLKRLARPMY--SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFI-LRQ 411 (467)
Q Consensus 336 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~-~~~ 411 (467)
++....... .......+.++...+. +.+ +..+++.++++.+.+.|+ ++ | +++. .+.
T Consensus 228 -----~~~~~~~~~~~~~~~~~~~~a~~~~l~---------~~~-~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~~ 287 (359)
T 3pj0_A 228 -----AKIWKRRYGGDLISLYPYILSADYYFE---------KRI-GKMAEYFEAAKGLAERFN-SCSG----VKTVPEVP 287 (359)
T ss_dssp -----HHHHHHHTTCCCSCCHHHHHHHHHHHH---------HHG-GGHHHHHHHHHHHHHHHH-TSTT----EEEESSSC
T ss_pred -----HHHHHHHhCCCcchhHHHHHHHHHHHH---------HHH-HHhHHHHHHHHHHHHHHh-hCCC----ceeeccCC
Confidence 443222111 1112222222222221 112 333456778889999998 76 3 5553 344
Q ss_pred cceEEecC--CC----HHHHHHHHHcccEEEeCCC----------eEEecc----CChhhHHHHHHHHHHH
Q 012238 412 IGMFSFTG--LN----KAQSDNMTNKWHVYMTKDG----------RISLAG----LSLAKCEYLADAIIDS 462 (467)
Q Consensus 412 ~g~f~~~~--l~----~~~~~~ll~~~gI~v~~gg----------Ris~~~----~~~~~i~~~~~~l~~~ 462 (467)
++.|+|+. .. .+.+.+.+.++||.+.+|. |++++. .+.+++++++++|.++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 288 VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 55555553 32 3344455556799999982 777752 3678888888888765
No 166
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.93 E-value=6.4e-25 Score=224.03 Aligned_cols=341 Identities=12% Similarity=0.017 Sum_probs=203.5
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.|||+.|.+...-+. .+|.|.+++.+.+... ..|....+..+.+.++++++....+.. ..++|++ |+||+
T Consensus 60 g~~ylD~~~~~~~~~lGh--~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sGs 132 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGN--SAPKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSAL--FNSGS 132 (451)
T ss_dssp SCEEEESSHHHHTCTTCT--TCHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEE--ESSHH
T ss_pred CCEEEEcCCCccccccCC--CCHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEE--eCcHH
Confidence 357899998865333333 3688999998887553 223333333344444444443322111 1468988 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC--------------CeEEeeeecC--CC-CCC--------Ch
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV--------------PWSEYRYYDP--KT-VGL--------DF 216 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~--------------~~~~v~~~~~--~~-~~~--------d~ 216 (467)
+|++.+.++......+++|++..|+|..+.......+. .+..++.... .. ++. ++
T Consensus 133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (451)
T 3oks_A 133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA 212 (451)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence 99999844432223458999999999877654433221 3445544200 00 011 34
Q ss_pred hhHHHHHHcC-CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcC
Q 012238 217 EGMIADIKAA-PGGSFILLHGCAHNPTGI--DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293 (467)
Q Consensus 217 ~~l~~~l~~~-~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (467)
+.+++.+++. ......++++.|.|++|. .++.+.+++|.++|++||+++|+||+|.+|...+. .+.. ......
T Consensus 213 ~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~-~~~~~~ 288 (451)
T 3oks_A 213 KRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFAC-EHEGID 288 (451)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGG-GGGTCC
T ss_pred HHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhh-hhcCCC
Confidence 5555555431 123445555677777763 44677799999999999999999999998864321 1111 111222
Q ss_pred CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHH
Q 012238 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEW 373 (467)
Q Consensus 294 ~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 373 (467)
.+++ +|||.++. |+|+||++ +++++++. +.......+.+.+.+++.++..+|+...
T Consensus 289 pdi~---t~sK~l~~-G~~iG~v~---~~~~~~~~------------~~~~~~~~t~~~~~~~~aaa~aal~~~~----- 344 (451)
T 3oks_A 289 PDLI---VTAKGIAG-GLPLSAVT---GRAEIMDS------------PHVSGLGGTYGGNPIACAAALATIETIE----- 344 (451)
T ss_dssp CSEE---EECGGGGT-TSSCEEEE---EEHHHHTC------------SCTTSBCCSSSSCHHHHHHHHHHHHHHH-----
T ss_pred CCee---eehhhhhC-CcceEEEE---ECHHHHhh------------hcCCCcCCCCCCCHHHHHHHHHHHHHHh-----
Confidence 3333 88999985 99999995 67888776 5544444455677888888777764210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCcccccCCcceEEecCC--------C----HHHHHHHHHcccEEEeC
Q 012238 374 KAEMEMMAGRIKNVRQKLFDSLSA---KDKSGKDWSFILRQIGMFSFTGL--------N----KAQSDNMTNKWHVYMTK 438 (467)
Q Consensus 374 ~~~l~~~~~~~~~~r~~l~~~l~~---~~g~~~~~~~~~~~~g~f~~~~l--------~----~~~~~~ll~~~gI~v~~ 438 (467)
+ +...++++++++++.+.|++ .++. +....+.|. |+|+.+ + .++.+.+++ +||.+.+
T Consensus 345 -~--~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~ 416 (451)
T 3oks_A 345 -S--EGLVARAQQIEKIMKDRLGRLQAEDDR---IGDVRGRGA-MIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLS 416 (451)
T ss_dssp -H--TTHHHHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEE
T ss_pred -h--hhHHHHHHHHHHHHHHHHHHHHhhCCC---eEEEEEeeE-EEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEec
Confidence 0 12333334444444444430 3331 233344444 555432 1 234555555 5999988
Q ss_pred CC------eEEecc-CChhhHHHHHHHHHHHHHh
Q 012238 439 DG------RISLAG-LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 439 gg------Ris~~~-~~~~~i~~~~~~l~~~l~~ 465 (467)
+| ||+++. .+++++++++++|++++++
T Consensus 417 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 417 CGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp ECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 64 776543 3889999999999999875
No 167
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=3.2e-24 Score=214.63 Aligned_cols=310 Identities=15% Similarity=0.027 Sum_probs=203.1
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC-CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+++++|+.|.| . +++.+.+++.+.+..+ .|. +..+..++|+++++++... ++++ +.||+
T Consensus 22 ~~~~~l~~~~p----~---~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~~gt 81 (391)
T 3dr4_A 22 SDLPRISVAAP----R---LDGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCGVK--------HAIA--CNNGT 81 (391)
T ss_dssp ------CCCCC----C---CCSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHTCS--------EEEE--ESSHH
T ss_pred CCCceeccCCC----C---CCHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhCCC--------cEEE--eCCHH
Confidence 47889998876 2 2466778887777543 354 6789999999999997532 5666 79999
Q ss_pred hHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCC
Q 012238 162 GSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240 (467)
Q Consensus 162 ~al~l~~~~l~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~N 240 (467)
+|+.++ +... +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++ +++++++ ++|
T Consensus 82 ~al~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~---~~~~~v~---~~n 152 (391)
T 3dr4_A 82 TALHLA--LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDND-PRTFNLDAAKLEALIT---PRTKAIM---PVH 152 (391)
T ss_dssp HHHHHH--HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGSGGGCC---TTEEEEC---CBC
T ss_pred HHHHHH--HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecC-ccccCcCHHHHHHhcC---CCceEEE---EEC
Confidence 999997 4444 5699999999999999999999999999999985 3567899999999886 5666666 578
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
|||...+. ++|+++|+++|+++|+|++|.... +.+ .... .. ..+.+.||||..+++|.+.|+++
T Consensus 153 ~tG~~~~~---~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~~~------~~--~di~~~S~s~~K~l~~g~gg~~~-- 217 (391)
T 3dr4_A 153 LYGQICDM---DPILEVARRHNLLVIEDAAEAVGATYRG--KKSG------SL--GDCATFSFFGNAIITTGEGGMIT-- 217 (391)
T ss_dssp GGGCCCCH---HHHHHHHHHTTCEEEEECTTCTTCEETT--EETT------SS--SSEEEEECBTTSSSCCBSCEEEE--
T ss_pred CCCChhhH---HHHHHHHHHcCCEEEEECcccccceECC--eeec------cc--CCEEEEECCCCCcCCcCCeEEEE--
Confidence 99998765 567777999999999999987533 221 0000 01 12677887733333456788885
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHhhccCcc--------------CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKRLARPMY--------------SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 385 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~ 385 (467)
+.++++.+. +........ ...+.+...+.... .+.+++..++.+
T Consensus 218 ~~~~~~~~~------------~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~----------~~~~~~~~~~~~ 275 (391)
T 3dr4_A 218 TNDDDLAAK------------MRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ----------LERVDEHLAARE 275 (391)
T ss_dssp ESCHHHHHH------------HHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH----------HHTHHHHHHHHH
T ss_pred ECCHHHHHH------------HHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 577777666 332221110 12233322221111 122456667777
Q ss_pred HHHHHHHHHhhhccCCCCCcccccC------CcceE-Eec------CCCHHHHHHHHHcccEEEeCCC------------
Q 012238 386 NVRQKLFDSLSAKDKSGKDWSFILR------QIGMF-SFT------GLNKAQSDNMTNKWHVYMTKDG------------ 440 (467)
Q Consensus 386 ~~r~~l~~~l~~~~g~~~~~~~~~~------~~g~f-~~~------~l~~~~~~~ll~~~gI~v~~gg------------ 440 (467)
++++++.+.|+ +++ +.+..+ ..+++ +++ +.+.+.+.+.+.++||.+.++.
T Consensus 276 ~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~ 350 (391)
T 3dr4_A 276 RVVGWYEQKLA-RLG----NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHL 350 (391)
T ss_dssp HHHHHHHHHHG-GGT----TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGG
T ss_pred HHHHHHHHHhh-cCC----ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhc
Confidence 78888889998 765 333332 12322 122 2345554444445699988661
Q ss_pred ----------------eEEec-cCChhhHHHHHHHHHHHH
Q 012238 441 ----------------RISLA-GLSLAKCEYLADAIIDSY 463 (467)
Q Consensus 441 ----------------Ris~~-~~~~~~i~~~~~~l~~~l 463 (467)
||++. .++++++++++++|++++
T Consensus 351 ~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 351 ATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 55544 348899999999998764
No 168
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.93 E-value=5.7e-24 Score=218.27 Aligned_cols=343 Identities=10% Similarity=0.020 Sum_probs=221.1
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.|||+.|.....-|. .+|.|.+++.+.+.... ..| ...+..+.+.++++++....+. ..++|++ ++||+
T Consensus 53 G~~ylD~~s~~~~~~lGh--~~p~v~~A~~~~l~~~~-~~~-~~~~~~~~~~~la~~l~~~~~~--~~~~v~~--~~sGs 124 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGY--GRREIVDAMAHQAMVLP-YAS-PWYMATSPAARLAEKIATLTPG--DLNRIFF--TTGGS 124 (476)
T ss_dssp CCEEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHCC-CCC-TTTCBCHHHHHHHHHHHTTSST--TCCEEEE--ESSHH
T ss_pred CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhcc-Ccc-cCccCCHHHHHHHHHHHhcCCC--CcCEEEE--eCchH
Confidence 457899998865333333 37889999988876521 222 2245566777888887665432 2468988 99999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCCCe-------------EEeeeecC-CCCCCC------
Q 012238 162 GSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARVPW-------------SEYRYYDP-KTVGLD------ 215 (467)
Q Consensus 162 ~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~~~-------------~~v~~~~~-~~~~~d------ 215 (467)
+|+..+.++.... ..+++|++..|+|..+.......+... ..++.... ..+..|
T Consensus 125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (476)
T 3i5t_A 125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence 9999985554333 346799999999988765554433321 22221000 001122
Q ss_pred --hhhHHHHHHcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHh
Q 012238 216 --FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT 291 (467)
Q Consensus 216 --~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~ 291 (467)
++.|++.+++. ++++.++++.+++|++|. +++.+.+++|.++|++||+++|+||+|.+|...+ ..+.......
T Consensus 205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G---~~~~~~~~~~ 281 (476)
T 3i5t_A 205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG---EWFASEKVFG 281 (476)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---CceeeecccC
Confidence 77888888642 245678888888888886 8889999999999999999999999999886432 1122211222
Q ss_pred cCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh-------ccCccCCCchHHHHHHHHH
Q 012238 292 RGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL-------ARPMYSNPPVHGARIVANV 363 (467)
Q Consensus 292 ~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~ 363 (467)
..++++ +|||.++ .| +|+|+++ +++++++. +... ....+.+.+.+++.++..+
T Consensus 282 v~pdi~---t~sK~l~-~G~~plg~v~---~~~~i~~~------------~~~~~~~~~~~~~~~t~~~np~a~aAa~aa 342 (476)
T 3i5t_A 282 VVPDII---TFAKGVT-SGYVPLGGLA---ISEAVLAR------------ISGENAKGSWFTNGYTYSNQPVACAAALAN 342 (476)
T ss_dssp CCCSEE---EECGGGG-TTSSCCEEEE---ECHHHHHT------------TSGGGCTTCEECCCCTTTTCHHHHHHHHHH
T ss_pred CCcchh---hhhhhhc-CCCcCeEEEE---ECHHHHHH------------HhcCCcccccccccCCCCcCHHHHHHHHHH
Confidence 223433 5789998 59 9999995 78888776 5432 2223446677777777766
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCcccccCCcceEEecCC--C--------------HHHHH
Q 012238 364 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFTGL--N--------------KAQSD 426 (467)
Q Consensus 364 L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~~l--~--------------~~~~~ 426 (467)
|+.. ++ +...++++++.+++.+.|+ +++ .|. +....+.|.|+ ++.+ + .++.+
T Consensus 343 L~~~------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~-v~~v~~~G~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~ 411 (476)
T 3i5t_A 343 IELM------ER--EGIVDQAREMADYFAAALA-SLRDLPG-VAETRSVGLVG-CVQCLLDPTRADGTAEDKAFTLKIDE 411 (476)
T ss_dssp HHHH------HH--TTHHHHHHHHHHHHHHHHH-TTTTSTT-EEEEEEETTEE-EEEECCC-----CCHHHHHHHHHHHH
T ss_pred HHHH------Hh--HHHHHHHHHHHHHHHHHHH-HHhcCCC-eEEEEecCcee-EEEEecCccccccccchhHHHHHHHH
Confidence 6421 11 2455666667777777776 553 111 33445555543 3321 1 13345
Q ss_pred HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+++ +||++.+.| ||+.. ..+++++++++++|+++++++
T Consensus 412 ~l~~-~Gv~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 412 RCFE-LGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp HHHH-TTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCCEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6665 599999876 77732 238899999999999998753
No 169
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.93 E-value=1.9e-25 Score=220.73 Aligned_cols=313 Identities=12% Similarity=0.054 Sum_probs=207.6
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcC---CCCcCCC---Cc----chHHHHHHHHHHHhCCCCcccccCcee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLP---IE----GLAAFNKVTAELLFGADNSVLKEQRVA 153 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~---~~~~Y~~---~~----G~~~lr~aia~~l~~~~~~~~~~~~i~ 153 (467)
.+++++.|.+ ++++.+++++.+.+... ....|.. .. ...++|+.++++++.. ++++|+
T Consensus 3 ~~~~~~~g~~-------~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~v~ 70 (360)
T 1w23_A 3 QVFNFNAGPS-------ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-----NDYQIL 70 (360)
T ss_dssp CCEECCSSSC-------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-----TTEEEE
T ss_pred ceEeecCCCc-------CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCceEE
Confidence 4677776643 23788999998876431 0011211 22 3567888888886432 256888
Q ss_pred eeecCCc-hhHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHH-HHHcCCC
Q 012238 154 TVQGLSG-TGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA-DIKAAPG 228 (467)
Q Consensus 154 ~~~t~gg-t~al~l~~~~l~~~~~---gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~-~l~~~~~ 228 (467)
+ |+|+ ++++.++ +...+.+ ||.|+++.++|.. ...++..| +++.+++++++ +.+|++.+++ .++ +
T Consensus 71 ~--~~g~gt~al~~~--~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~-~~~d~~~l~~~~i~---~ 140 (360)
T 1w23_A 71 F--LQGGASLQFTML--PMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKAN-SYQSIPDFSEFQLN---E 140 (360)
T ss_dssp E--ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGG-TSCSCCCGGGCCCC---T
T ss_pred E--ECCcchHHHHHH--HHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeeccccc-CcCCccchHhhccC---C
Confidence 8 8998 9999997 4445554 5566766666644 34467789 99999985322 3479999888 774 5
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc
Q 012238 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL 308 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 308 (467)
+++++++++|+||||.+++ + | +++||+++|+|++|..+... .+ + ... .++++|+||.+++
T Consensus 141 ~~k~v~~~~~~nptG~~~~--~---i---~~~~~~~li~D~a~~~~~~~---~~---~----~~~--di~~~s~sK~~~~ 200 (360)
T 1w23_A 141 NDAYLHITSNNTIYGTQYQ--N---F---PEINHAPLIADMSSDILSRP---LK---V----NQF--GMIYAGAQKNLGP 200 (360)
T ss_dssp TEEEEEEESEETTTTEECS--S---C---CCCCSSCEEEECTTTTTSSC---CC---G----GGC--SEEEEETTTTTSC
T ss_pred CCCEEEEeCCCCCcceecc--c---c---cccCCceEEEechhhcCCCC---cC---c----ccC--CEEEEEcccccCC
Confidence 7889999999999999987 2 3 23799999999998765422 11 1 111 3789999999997
Q ss_pred CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhc------------cCccCCCchHHHHHHHHHhCChhhHHHHHH-
Q 012238 309 YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLA------------RPMYSNPPVHGARIVANVVGNPALFDEWKA- 375 (467)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~- 375 (467)
+| +||++ .++++++. +.... ...+..++...+.++..++.. + .+
T Consensus 201 ~G--~G~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~--~----~~~ 257 (360)
T 1w23_A 201 SG--VTVVI---VKKDLLNT------------KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDW--I----KDL 257 (360)
T ss_dssp TT--CEEEE---EEHHHHCS------------CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH--H----HHT
T ss_pred CC--cEEEE---EcHHHHhh------------cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHH--H----HHh
Confidence 77 89996 56666655 22211 111234455554555444421 1 11
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc-cC--CcceEEecCCC-----HHHHHHHHHcccEEEeCC----C--
Q 012238 376 -EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LR--QIGMFSFTGLN-----KAQSDNMTNKWHVYMTKD----G-- 440 (467)
Q Consensus 376 -~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~-~~--~~g~f~~~~l~-----~~~~~~ll~~~gI~v~~g----g-- 440 (467)
.+++++++++++++++.+.|+ +++ +.+... .+ .+++++|+.+. .++.++ +.++||.+.+| +
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~L~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~~~~~~~~~~~i 333 (360)
T 1w23_A 258 GGAEAIAKQNEEKAKIIYDTID-ESN--GFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAK-AKEQGFVGLNGHRSVGGC 333 (360)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH-TTT--TSSEESSCGGGBCSSEEEEECSSHHHHHHHHHH-HHHTTEESCBCCTTTCSE
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-Hcc--CcccccCCchhccCcEEEEEcCCCccHHHHHHH-HHHCCeeeecCCCCCCeE
Confidence 367788999999999999998 765 111322 12 34657777553 133444 44579999887 2
Q ss_pred eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238 441 RISLAGL-SLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 441 Ris~~~~-~~~~i~~~~~~l~~~l~~ 465 (467)
||+++.. +++++++++++|++++++
T Consensus 334 Ris~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 334 RASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 9999743 778999999999998765
No 170
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.93 E-value=2.1e-24 Score=220.10 Aligned_cols=340 Identities=11% Similarity=-0.001 Sum_probs=214.9
Q ss_pred CCcEEecCcccCCCCCCCCchHHHH-H-HHHH---HHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeee
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVK-K-AENL---MLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV 155 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~-~-a~~~---~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~ 155 (467)
...+||+.|.+-..-++ .+|.|. + ++.+ .+..... ..| +.....++++.+++++.. ..+++|++
T Consensus 54 ~~ylD~~~~~~~~~lG~--~~p~v~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~la~~la~~~~~-----~~~~~v~~- 124 (449)
T 2cjg_A 54 RRYLDMFTFVASSALGM--NPPALVDDREFHAELMQAALNKPSNSDV-YSVAMARFVETFARVLGD-----PALPHLFF- 124 (449)
T ss_dssp CEEEESSHHHHTCSSCB--SCHHHHTCHHHHHHHHHHHTCCCCTTTC-CCHHHHHHHHHHHHHHCC-----TTCCEEEE-
T ss_pred cEEEEccCCccccCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCccc-CCHHHHHHHHHHHHhcCC-----CCCCEEEE-
Confidence 46899988875222232 267788 7 8887 5544321 123 344467788888888641 12678999
Q ss_pred ecCCchhHHHHHHHHHHHh-C-----------CCCEEEEcCCCCcchHHHH-hhCC--------C-----CeEEeeeecC
Q 012238 156 QGLSGTGSLRLAAALIERY-F-----------PGAKVLISSPTWGNHKNIF-NDAR--------V-----PWSEYRYYDP 209 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~-~-----------~gd~Vlv~~P~y~~~~~~~-~~~G--------~-----~~~~v~~~~~ 209 (467)
++||++|++.+..+...+ . +||+|++.+|+|..+.... ...| . .++.+|..++
T Consensus 125 -~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 203 (449)
T 2cjg_A 125 -VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP 203 (449)
T ss_dssp -ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred -eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence 999999999985443222 1 2899999999998765432 2222 1 3445554220
Q ss_pred CCC--------CCChhhHHHHHHcCCCCcEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCC
Q 012238 210 KTV--------GLDFEGMIADIKAAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD 280 (467)
Q Consensus 210 ~~~--------~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG-~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~ 280 (467)
... ..+++.+++.+++..+++++++++..+|||| ..++.+++++|.++|++||+++|+||+|.++...+.
T Consensus 204 ~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~- 282 (449)
T 2cjg_A 204 GLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT- 282 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-
T ss_pred hhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-
Confidence 001 1355668888864335677777776679999 499999999999999999999999999998865421
Q ss_pred CChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHH-HHhhccCccCCCchHHHHH
Q 012238 281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQ-LKRLARPMYSNPPVHGARI 359 (467)
Q Consensus 281 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~ 359 (467)
.+.. .......+++ +|||.+ |+||++ .++++++. +... +.......+.+.+.+++.+
T Consensus 283 --~~~~-~~~~~~~di~---t~sK~l-----~iG~~~---~~~~~~~~--------l~~~~~~~~~~~~t~~~n~~~~~a 340 (449)
T 2cjg_A 283 --AWAY-QQLDVAPDIV---AFGKKT-----QVCGVM---AGRRVDEV--------ADNVFAVPSRLNSTWGGNLTDMVR 340 (449)
T ss_dssp --SSTH-HHHTCCCSEE---EECGGG-----SSEEEE---ECGGGGGS--------TTCTTTSTTSSCCSSSSCHHHHHH
T ss_pred --ceee-cccCCCceEE---EecCcc-----cEEEEE---ECHHHhhh--------hhhcccCCcccccCCCCCHHHHHH
Confidence 1122 1222233433 789987 799996 56676664 1000 1111122234566777777
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCCC-----HHHHHHHHHcc
Q 012238 360 VANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGLN-----KAQSDNMTNKW 432 (467)
Q Consensus 360 ~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l~-----~~~~~~ll~~~ 432 (467)
+..+|+.. .+ +...++++++++++.+.|+ ++ +.+..+....+.|. |+++.+. .++++++++ +
T Consensus 341 a~aal~~~------~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~-~ 409 (449)
T 2cjg_A 341 ARRILEVI------EA--EGLFERAVQHGKYLRARLD-ELAADFPAVVLDPRGRGL-MCAFSLPTTADRDELIRQLWQ-R 409 (449)
T ss_dssp HHHHHHHH------HH--HTHHHHHHHHHHHHHHHHH-HHHHHSTTTSEEEEEETT-EEEEECSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHH------Hh--ccHHHHHHHHHHHHHHHHH-HHHhhCCCceeeEeeccE-EEEEEECChHHHHHHHHHHHH-C
Confidence 77666421 11 2355667777888888877 54 22211233445555 4445542 245667765 6
Q ss_pred cEEEeCCC----eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 433 HVYMTKDG----RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 433 gI~v~~gg----Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
||.+.++| ||+++. .+++++++++++|+++++++
T Consensus 410 Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 410 AVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp TEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999875 886542 38899999999999998865
No 171
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.93 E-value=3.3e-23 Score=209.22 Aligned_cols=195 Identities=18% Similarity=0.072 Sum_probs=146.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCcCCCCcc----hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH
Q 012238 98 LQPYVLDVVKKAENLMLERGENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173 (467)
Q Consensus 98 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~ 173 (467)
..|++++.+.+++.+.+..+....|.+..| ..++++.+++++.. + ++++ +.+|++++.++ +...
T Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~-------~-~~i~--~~~gt~al~~~--~~~~ 77 (418)
T 2c81_A 10 EWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV-------P-YCVP--TTSGSTALMLA--LEAL 77 (418)
T ss_dssp CSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC-------S-EEEE--ESCHHHHHHHH--HHHT
T ss_pred CCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC-------C-cEEE--eCCHHHHHHHH--HHHc
Confidence 445557899999998886543234776667 67788888887532 2 3455 67789999997 4444
Q ss_pred -hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012238 174 -YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE 252 (467)
Q Consensus 174 -~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~ 252 (467)
+.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++ ++++++++ +||||...+ ++
T Consensus 78 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~~---~~~~G~~~~---~~ 147 (418)
T 2c81_A 78 GIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVE-ADTYCIDPQLIKSAIT---DKTKAIIP---VHLFGSMAN---MD 147 (418)
T ss_dssp TCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHGGGCC---TTEEEECC---BCCTTCCCC---HH
T ss_pred CCCCcCEEEECCCccHhHHHHHHHcCCEEEEEecC-CCCCCcCHHHHHHhhC---CCCeEEEE---eCCcCCccc---HH
Confidence 5699999999999999999999999999999984 3467899999998886 46777765 469998755 56
Q ss_pred HHHHHHHhcCCeeEEeccCCCCC-CCCCCCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEecCCHHHHhh
Q 012238 253 KIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAAR 328 (467)
Q Consensus 253 ~l~~~~~~~~~~li~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~ 328 (467)
+|.++|+++|++||+|++|..+. ++. .. + .... .+.+.|| ||.++. | |+||++ +.++++++.
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~---~~--~---~~~~--~~~~~s~s~~K~~~~-g-~~g~~~--~~~~~l~~~ 212 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNN---QR--A---GTIG--DIGAFSCQQGKVLTA-G-EGGIIV--TKNPRLFEL 212 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETT---EE--T---TSSS--SEEEEECCTTSSSCS-S-SCEEEE--ESCHHHHHH
T ss_pred HHHHHHHHCCCEEEEECcccccCccCC---Ee--c---cccc--ceEEEeccCCcccCC-C-CeEEEE--ECCHHHHHH
Confidence 77788999999999999998876 432 11 1 0111 2667777 999996 8 999996 446777776
No 172
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.93 E-value=2.1e-24 Score=221.05 Aligned_cols=333 Identities=11% Similarity=0.046 Sum_probs=206.3
Q ss_pred CCCcEEecCccc-CCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 82 DEKKLNLGVGAY-RTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 82 ~~~~i~l~~G~~-~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
+.++++|+.|.+ .|.....+ .+.+.+++.+.+..+. ..|.+..+..+||+++++++.. +++++ |+||
T Consensus 31 g~~~~~~~~~~~ylD~~~~~~-~~~v~~a~~~~l~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~~g 98 (467)
T 2oqx_A 31 GMNPFLLDSEDVFIDLLTDSG-TGAVTQSMQAAMMRGD-EAYSGSRSYYALAESVKNIFGY--------QYTIP--THQG 98 (467)
T ss_dssp TSCGGGSCGGGCSEECSCCSS-CSCCCHHHHHHTTSCC-CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--EC--
T ss_pred CCCceeccCCCeeEecccCCC-cHHHHHHHHHHhccCc-ceeccCchhHHHHHHHHHHhCc--------CcEEE--cCCc
Confidence 345677777743 23222222 2667777777765443 5788888999999999999742 47888 9999
Q ss_pred hhHHHHHHHHHHHhCC-----C----CEEEEcCCCCcchHHHHhhCCCCeEEeee----ecC----CCCCCChhhHHHHH
Q 012238 161 TGSLRLAAALIERYFP-----G----AKVLISSPTWGNHKNIFNDARVPWSEYRY----YDP----KTVGLDFEGMIADI 223 (467)
Q Consensus 161 t~al~l~~~~l~~~~~-----g----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~----~~~----~~~~~d~~~l~~~l 223 (467)
++|+.++. .....+ | |+|++..+.|..+.......|..+..... ... .++.+|++.|++.+
T Consensus 99 t~A~~~al--~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i 176 (467)
T 2oqx_A 99 RGAEQIYI--PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176 (467)
T ss_dssp CCSHHHHH--HHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHHH--HHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHH
Confidence 99999983 333456 8 98888755555555666666766554321 001 34568999999999
Q ss_pred HcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCCeeEEeccCCC----------CCCCCCCCChhHHHHHH-
Q 012238 224 KAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFA- 290 (467)
Q Consensus 224 ~~~~-~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~~~~~~~~~li~Deay~~----------~~~~~~~~~~~~~~~~~- 290 (467)
++.. ++++++++++||||| |.+++.+++++|+++|++||+++|+|+++.. ..+.+ .+. ..+.
T Consensus 177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g--~~~---~~~~~ 251 (467)
T 2oqx_A 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD--WTI---EQITR 251 (467)
T ss_dssp HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT--SCH---HHHHH
T ss_pred HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC--ccH---HHHhh
Confidence 7421 257788889999998 9999999999999999999999999954221 12221 111 1222
Q ss_pred ---hcCCeEEEEecCccCcccC-CCccceEEEecCCHH-HHhhhhhhhHHHHHHHHHhhc---cCc--cCCCchHHHHHH
Q 012238 291 ---TRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSD-LAARCCEVAVIQVKSQLKRLA---RPM--YSNPPVHGARIV 360 (467)
Q Consensus 291 ---~~~~~~i~~~S~SK~~~~~-G~RiG~~~~v~~~~~-~~~~~~~~~~~~~~~~l~~~~---~~~--~~~~~~~~~~~~ 360 (467)
... + +++.|+||.++++ | ||++ .+++ +++. +. .++... ... +...+..+..++
T Consensus 252 ~~~~~~-d-~~~~s~sK~~g~~~G---g~~~---~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~al 314 (467)
T 2oqx_A 252 ETYKYA-D-MLAMSAKKDAMVPMG---GLLC---MKDDSFFDV--------YT-ECRTLCVVQEGFPTYGGLEGGAMERL 314 (467)
T ss_dssp HHGGGC-S-EEEEESSSTTCCSSC---EEEE---ECSGGGHHH--------HH-HHHHHHHHTTSSCCCCCCCHHHHHHH
T ss_pred hhhccC-C-eEEEecccccCCCCc---eEEE---ecChhHHHH--------HH-HHHHhhhccCCcccccchhhhHHHHH
Confidence 222 3 4578999999876 3 5653 4444 3332 11 122211 111 112222221111
Q ss_pred HHHhCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecCC-------CH-H-----HHH
Q 012238 361 ANVVGNPALFDEWKAEM-EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTGL-------NK-A-----QSD 426 (467)
Q Consensus 361 ~~~L~~~~~~~~~~~~l-~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l-------~~-~-----~~~ 426 (467)
...+. +.+ ++..++.+++++++.+.|+ +.+ +.+. +.+++++|+.+ +. + +++
T Consensus 315 ~~~l~---------~~~~~~~~~~~~~~~~~l~~~L~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 379 (467)
T 2oqx_A 315 AVGLY---------DGMNLDWLAYRIAQVQYLVDGLE-EIG----VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALAC 379 (467)
T ss_dssp HHHHH---------HTTCHHHHHHHHHHHHHHHHHHH-HTT----CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHH
T ss_pred HHhhH---------hhhhHHHHHHHHHHHHHHHHHHH-HCC----Ceee-cCCceEEEEechhhcccCCcccccHHHHHH
Confidence 11111 111 1233445677888999998 765 4555 66777777643 21 1 255
Q ss_pred HHHHcccEEEeC-C------------------C--eEEecc--CChhhHHHHHHHHHHHHHh
Q 012238 427 NMTNKWHVYMTK-D------------------G--RISLAG--LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 427 ~ll~~~gI~v~~-g------------------g--Ris~~~--~~~~~i~~~~~~l~~~l~~ 465 (467)
.+++++||.+.+ + + ||+++. .+++++++++++|++++++
T Consensus 380 ~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 380 ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp HHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 664667999876 2 3 888873 4789999999999999865
No 173
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.92 E-value=1.3e-23 Score=210.89 Aligned_cols=286 Identities=15% Similarity=0.135 Sum_probs=175.6
Q ss_pred ecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHH
Q 012238 88 LGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165 (467)
Q Consensus 88 l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~ 165 (467)
.+++.| +....++..+.+.+++....+....+.|. +.....++++.+++++.. + +.++ +.+|++|+.
T Consensus 26 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a~~ 94 (398)
T 1gc0_A 26 GALVPP-VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGG-------E-AGLA--LASGMGAIT 94 (398)
T ss_dssp TBSSCC-BCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHHH
T ss_pred CCcCCC-ccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHHHH
Confidence 344444 33333444556665554221111112333 567789999999999643 2 3444 567789999
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCC
Q 012238 166 LAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241 (467)
Q Consensus 166 l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NP 241 (467)
++ +...+.+||+|+++.|+|..+...+ +..|++++.++. .|++.+++.++ ++++++++++|+||
T Consensus 95 ~~--l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~np 162 (398)
T 1gc0_A 95 ST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMT---PATRVIYFESPANP 162 (398)
T ss_dssp HH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred HH--HHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCC
Confidence 97 4445679999999999999887765 677888888765 38899999887 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEec
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVC 320 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~ 320 (467)
||.+++ +++|+++|+++|+++|+|++|..+.+.. ++ . ...++++.|+||.++.+|+|+ ||++
T Consensus 163 tG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~----~-~~~d~~~~S~sK~~~~~~~~~~G~l~--- 225 (398)
T 1gc0_A 163 NMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR------PL----E-LGADLVVHSATKYLSGHGDITAGIVV--- 225 (398)
T ss_dssp TCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC------GG----G-GTCSEEEEETTTTTTCSSSCCCEEEE---
T ss_pred Cccccc---HHHHHHHHHHcCCEEEEECCCcccccCC------ch----h-hCceEEEECCccccCCCCCCeEEEEE---
Confidence 999997 5677888999999999999988655431 11 1 135688999999999999998 8875
Q ss_pred CCHHHHh-hhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012238 321 SSSDLAA-RCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAK 398 (467)
Q Consensus 321 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~ 398 (467)
.+++.++ . ++..... .....+.+.+.++...++. +....++..++.+.+.+.|+ +
T Consensus 226 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~-~ 282 (398)
T 1gc0_A 226 GSQALVDRI------------RLQGLKDMTGAVLSPHDAALLMRGIKT----------LNLRMDRHCANAQVLAEFLA-R 282 (398)
T ss_dssp ECHHHHHHH------------HHTHHHHHTCCCCCHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHH-T
T ss_pred EChHHHHHH------------HHHHhhccCCCCCCHHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHh-c
Confidence 5655554 3 3322222 2234556666665555542 22334445555666666665 4
Q ss_pred cCC------CC-----Cccccc----CCcceEEecCC--CHHHHHHHHHcccEEEe
Q 012238 399 DKS------GK-----DWSFIL----RQIGMFSFTGL--NKAQSDNMTNKWHVYMT 437 (467)
Q Consensus 399 ~g~------~~-----~~~~~~----~~~g~f~~~~l--~~~~~~~ll~~~gI~v~ 437 (467)
.+. |+ .+.... ..++++.| .+ ..+.+.+++++.+|.+.
T Consensus 283 ~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~i~~~ 337 (398)
T 1gc0_A 283 QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAF-ELKGGIGAGRRFMNALQLFSR 337 (398)
T ss_dssp CTTEEEEEEC----------------CCTTEEEE-EETTHHHHHHHHHHHCSSSEE
T ss_pred CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEE-EECCCHHHHHHHHHhCCCcee
Confidence 320 00 011121 24665554 33 23456677777776553
No 174
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.92 E-value=8.2e-24 Score=217.14 Aligned_cols=324 Identities=13% Similarity=0.047 Sum_probs=213.7
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC---CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
..+.|+ |.+ . .. .|.+.+++.+... . .+.|.+ ..|..++++.+++++....|.+. .+++ ++||
T Consensus 67 ~~~~lg-~~~----~-~~-~p~v~~~~~~~~~-~-~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~--~~gg 132 (474)
T 1wyu_B 67 TFYPLG-SCT----M-KY-NPKLHEEAARLFA-D-LHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLE--PAAG 132 (474)
T ss_dssp SCCCBT-TTC----C-CC-CCHHHHHHHHTTS-S-CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECC--CSSH
T ss_pred Cccccc-ccc----c-cC-CHHHHHHHHHHHH-h-cCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeec--ChHH
Confidence 467777 543 2 22 3445555544321 1 133443 56777777777777654434321 2445 8999
Q ss_pred hhHHHHHHHHHHH--hCCCC-----EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEE
Q 012238 161 TGSLRLAAALIER--YFPGA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233 (467)
Q Consensus 161 t~al~l~~~~l~~--~~~gd-----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i 233 (467)
++++.++...+.. ..+|| +|+++.|+|+.+...++..|++++.++++ .++.+|++.|++.++ ++++++
T Consensus 133 t~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~--~~~~~d~~~L~~~i~---~~t~~v 207 (474)
T 1wyu_B 133 AHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG--PEGEVDLEALKRELG---PHVAAL 207 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC--TTSSBCHHHHHHHCS---TTEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC--CCCCcCHHHHHHhhC---CCceEE
Confidence 9999875322221 24887 99999999999999999999999999984 457899999999997 567888
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccC-C--
Q 012238 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY-A-- 310 (467)
Q Consensus 234 ~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G-- 310 (467)
++++| ||||.+. +++++|+++|+++|+++|+|++|.....+. ... . .. ...+++.|++|.|+.| |
T Consensus 208 ~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~--~~~---~---~~-g~di~~~s~~K~~~~p~g~g 275 (474)
T 1wyu_B 208 MLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGW--ARP---G---DM-GFDVVHLNLHKTFTVPHGGG 275 (474)
T ss_dssp EECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTT--CCH---H---HH-TCSEEECCTTTTTCCCCTTS
T ss_pred EEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccC--CCc---c---cC-CCcEEEEeCccccccCCCCC
Confidence 88988 6899873 357788999999999999999997665432 111 1 11 2457788999999877 5
Q ss_pred -CccceEEEecCCHHHHhhhhhhhHHHHHHHHH-hhc------------------cCccCCCchHHHHHHHHHhCChhhH
Q 012238 311 -ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK-RLA------------------RPMYSNPPVHGARIVANVVGNPALF 370 (467)
Q Consensus 311 -~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~-~~~------------------~~~~~~~~~~~~~~~~~~L~~~~~~ 370 (467)
.|+||++ .++++++. +. ... +......+..++.++...+....
T Consensus 276 G~~~G~~~---~~~~l~~~------------l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g-- 338 (474)
T 1wyu_B 276 GPGSGPVG---VKAHLAPY------------LPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG-- 338 (474)
T ss_dssp CCCCCCEE---ECGGGGGG------------CCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEE---EcHHHHHh------------CCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH--
Confidence 5999996 55666665 32 100 00111244455555555443211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-Eec----CCCH-HHHHHHHHcccEEEeC------
Q 012238 371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT----GLNK-AQSDNMTNKWHVYMTK------ 438 (467)
Q Consensus 371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~----~l~~-~~~~~ll~~~gI~v~~------ 438 (467)
.+.+++..+++.++++++.+.|+ ++| +++..+...+. .|+ +.+. ++.++|++ +||.+..
T Consensus 339 ---~~~l~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~Gi~~~~~~~~~~ 409 (474)
T 1wyu_B 339 ---LEGLKKAAALAVLNARYLKELLK-EKG----YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLE-LGFHPPTVYFPLI 409 (474)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHH-HTT----CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHH-TTCCCCEESCSTT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHh-hcC----cEecCCCCcceEEEEEcCCCCCHHHHHHHHHH-CCccccccccccc
Confidence 23467788889999999999998 765 34422322221 233 2344 44566665 4997521
Q ss_pred -CC--eEEeccC-ChhhHHHHHHHHHHHHH
Q 012238 439 -DG--RISLAGL-SLAKCEYLADAIIDSYH 464 (467)
Q Consensus 439 -gg--Ris~~~~-~~~~i~~~~~~l~~~l~ 464 (467)
.+ ||+++.. +++++++++++|+++++
T Consensus 410 ~~~~lRis~~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 410 VKEALMVEPTETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp STTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 12 9998753 67899999999998875
No 175
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.92 E-value=2.4e-23 Score=208.00 Aligned_cols=253 Identities=13% Similarity=0.073 Sum_probs=172.3
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~ 199 (467)
+..+..++++++++++.. ++.|++ ++| ++++.++ +...+.+||+|+++.|+|...... ++..|+
T Consensus 50 ~~~~~~~l~~~la~~~~~-------~~~i~~--~sG-t~a~~~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEGG-------AGAVLT--NTG-MSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp CCHHHHHHHHHHHHHHTC-------SEEEEE--SSH-HHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred CCccHHHHHHHHHHHhCC-------CcEEEe--CCH-HHHHHHH--HHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 567889999999999753 245655 554 9999997 333467999999999999864443 467888
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~ 279 (467)
+++.++. .|++.+++.++ ++++++++++|+||||.+++ +++|.++|+++|+++|+||+|..+....
T Consensus 118 ~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 183 (386)
T 1cs1_A 118 RVLFVDQ-------GDEQALRAALA---EKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN- 183 (386)
T ss_dssp EEEEECT-------TCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EEEEeCC-------CCHHHHHHhhc---cCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 8888765 38999999998 46678888999999999997 5677788999999999999998876531
Q ss_pred CCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358 (467)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (467)
+. . ...++++.|+||.++.+|.|+ ||++ +.++++++. +...........+...+.
T Consensus 184 -----~~----~-~~~di~~~s~sK~~~~~~~~~~G~~~--~~~~~l~~~------------l~~~~~~~~~~~~~~~~~ 239 (386)
T 1cs1_A 184 -----PL----A-LGADLVLHSCTKYLNGHSDVVAGVVI--AKDPDVVTE------------LAWWANNIGVTGGAFDSY 239 (386)
T ss_dssp -----GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE--ESSHHHHHH------------HHHHHHHHTCBCCHHHHH
T ss_pred -----cc----c-cCceEEEEcCcccccCCCCceeEEEE--eCcHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence 11 1 235788999999999999998 8885 445577776 433333223335555555
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CC-----Ccccc----cCCcceEEec-CCCH
Q 012238 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS------GK-----DWSFI----LRQIGMFSFT-GLNK 422 (467)
Q Consensus 359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~------~~-----~~~~~----~~~~g~f~~~-~l~~ 422 (467)
++...++. +....+++.++++.+.+.|+ +++. +. .+.+. ...++++.|. .-..
T Consensus 240 ~~~~~l~~----------~~~~~~~~~~~~~~l~~~l~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (386)
T 1cs1_A 240 LLLRGLRT----------LVPRMELAQRNAQAIVKYLQ-TQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE 308 (386)
T ss_dssp HHHHHHTT----------HHHHHHHHHHHHHHHHHHHT-TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCH
T ss_pred HHHhcccH----------HHHHHHHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCH
Confidence 55444432 23344555666777777776 5421 11 01111 1235655443 2134
Q ss_pred HHHHHHHHcccEEEe
Q 012238 423 AQSDNMTNKWHVYMT 437 (467)
Q Consensus 423 ~~~~~ll~~~gI~v~ 437 (467)
+.+.+.++++||.+.
T Consensus 309 ~~~~~~l~~~gi~~~ 323 (386)
T 1cs1_A 309 QTLRRFLGGLSLFTL 323 (386)
T ss_dssp HHHHHHHHTCSSSEE
T ss_pred HHHHHHHHhCCcceE
Confidence 556666777899886
No 176
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.92 E-value=2e-24 Score=213.80 Aligned_cols=312 Identities=12% Similarity=0.042 Sum_probs=201.4
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC--------CCcCCCCc--chHHHHHHHHHHHhCCCCcccccC-ce
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--------NKEYLPIE--GLAAFNKVTAELLFGADNSVLKEQ-RV 152 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~--------~~~Y~~~~--G~~~lr~aia~~l~~~~~~~~~~~-~i 152 (467)
.+++++.|. .+ +++.+++++.+.+.... ...|.+.. -..++|+.++++++ . +++ ++
T Consensus 4 ~~~l~~~~~------~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~--~~~~~~ 70 (362)
T 2c0r_A 4 RAYNFNAGP------AA-LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG----N--PTGYKV 70 (362)
T ss_dssp CCEECCSSS------CC-CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTT----C--CSSEEE
T ss_pred ceeeccCCC------CC-CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhC----C--CCCcEE
Confidence 467777663 23 38889999988764210 01121211 13455555555543 2 133 54
Q ss_pred -eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCC--CChhhHHHHHHcCC
Q 012238 153 -ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVG--LDFEGMIADIKAAP 227 (467)
Q Consensus 153 -~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~--~d~~~l~~~l~~~~ 227 (467)
++ |+|+++++.++ +...+.|||+|+++.+.+.. +...++..| +++.++++.+.+++ +|.+.++ ++
T Consensus 71 i~~--t~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~--- 140 (362)
T 2c0r_A 71 LFI--QGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ--- 140 (362)
T ss_dssp EEE--SSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC---
T ss_pred EEE--CCCchHHHHHH--HHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC---
Confidence 56 89999999998 45557799999988776443 246677789 99999985222233 4666553 43
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
++++++++++|+||||.+++ ++++| +|+++|+|++|..+... .+ + ... .+++.|+||.+|
T Consensus 141 ~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~---~~---~----~~~--d~~~~s~~K~~g 200 (362)
T 2c0r_A 141 DNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRP---FD---L----NQF--GLVYAGAQKNLG 200 (362)
T ss_dssp TTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSSC---CC---G----GGC--SEEEEETTTTTC
T ss_pred CCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCCc---cc---h----hHC--cEEEEecccccc
Confidence 67899999999999999754 34444 89999999998755421 11 1 111 477889999999
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh------------ccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL------------ARPMYSNPPVHGARIVANVVGNPALFDEWKA 375 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 375 (467)
++| +||++ .++++++. +... ......+++...+.++..+|+.. .+
T Consensus 201 ~~G--~G~l~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~------~~ 257 (362)
T 2c0r_A 201 PSG--VTVVI---VREDLVAE------------SPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI------EE 257 (362)
T ss_dssp CSS--CEEEE---EEGGGSSS------------CCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH------HH
T ss_pred CcC--cEEEE---EcHHHHhh------------ccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHH------HH
Confidence 888 89996 56666654 2210 11223356666777766665421 22
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhhccC-CCCCccccc---CCcceEEecCCC----H-HHHHHHHHcccEEEeCC----C
Q 012238 376 --EMEMMAGRIKNVRQKLFDSLSAKDK-SGKDWSFIL---RQIGMFSFTGLN----K-AQSDNMTNKWHVYMTKD----G 440 (467)
Q Consensus 376 --~l~~~~~~~~~~r~~l~~~l~~~~g-~~~~~~~~~---~~~g~f~~~~l~----~-~~~~~ll~~~gI~v~~g----g 440 (467)
.+++++++++++++++.+.|+ ++| + +.... ..++.++++.+. . ++.+. |+++||.+.+| +
T Consensus 258 ~~~~~~~~~~~~~~~~~l~~~L~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~~gi~~~~g~~~~~ 332 (362)
T 2c0r_A 258 RGGLEGVQQANRKKASLIYDAID-QSGGF---YRGCVDVDSRSDMNITFRLASEELEKEFVKA-SEQEGFVGLKGHRSVG 332 (362)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH-TSTTS---SEESSCGGGBCSSEEEEECSCHHHHHHHHHH-HHHTTEESCBCCTTTC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHH-HcCCc---cccCCChHHcCCcEEEEEcCCcchHHHHHHH-HHHCCCeeccCCCCCC
Confidence 367888999999999999999 775 2 13221 112334444332 2 33444 55569988876 2
Q ss_pred --eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238 441 --RISLAGL-SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 --Ris~~~~-~~~~i~~~~~~l~~~l~~~ 466 (467)
|||++.. +++++++++++|++++++.
T Consensus 333 ~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 333 GLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999743 6799999999999988753
No 177
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.92 E-value=7.5e-24 Score=206.97 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEee
Q 012238 130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYR 205 (467)
Q Consensus 130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~ 205 (467)
++++++++++.. ++.+++ .+|++++.++ +...+.+||+|+++.|+|..+...+ +..|++++.++
T Consensus 2 ~l~~~la~~~g~-------~~~i~~---~sG~~a~~~~--~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLEHA-------EACAAT---ASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTC-------SEEEEE---SSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHhCC-------CeEEEe---CChHHHHHHH--HHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 689999999743 234544 5569999997 3334679999999999999887665 45899888876
Q ss_pred eecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCCeeEEeccCCCCCCCCCCCChh
Q 012238 206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDAS 284 (467)
Q Consensus 206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~-~~~~li~Deay~~~~~~~~~~~~~ 284 (467)
. .|++.+++.++ ++++++++++|+||||.+++ +++|.++|++ +|+++|+|++|.......
T Consensus 70 ~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~------ 130 (331)
T 1pff_A 70 M-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN------ 130 (331)
T ss_dssp T-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC------
T ss_pred C-------CCHHHHHHhhc---CCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC------
Confidence 5 47888988886 57889999999999999997 5678888999 999999999987554321
Q ss_pred HHHHHHhcCCeEEEEecCccCcccCCCc-cceEEEecCCH-HHHhhhhhhhHHHHHHHHHhhccC-ccCCCchHHHHHHH
Q 012238 285 SVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSS-DLAARCCEVAVIQVKSQLKRLARP-MYSNPPVHGARIVA 361 (467)
Q Consensus 285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~v~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~ 361 (467)
+. + .+.++++.|+||.++.+|.| +||++ .++ ++++. ++..... .....+...+.++.
T Consensus 131 ~~----~-~~~d~~~~s~~K~~~~~~~r~~G~~~---~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~ 190 (331)
T 1pff_A 131 PL----D-LGVDIVVHSATKYINGHTDVVAGLVC---SRADIIAKV------------KSQGIKDITGAIISPHDAWLIT 190 (331)
T ss_dssp GG----G-GTCSEEEEETTTTTSSSSSCCCEEEE---ECHHHHHHH------------HHTCCCCCCCCCCCHHHHHHHH
T ss_pred hh----h-cCCcEEEEECccccCCCCCceEEEEE---eCcHHHHHH------------HHHHHHhhcCCCCCHHHHHHHH
Confidence 11 1 24678999999999999999 78985 555 77776 6665554 34456666665554
Q ss_pred HHh
Q 012238 362 NVV 364 (467)
Q Consensus 362 ~~L 364 (467)
..+
T Consensus 191 ~~l 193 (331)
T 1pff_A 191 RGT 193 (331)
T ss_dssp HHH
T ss_pred cCc
Confidence 443
No 178
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.92 E-value=2.7e-23 Score=206.25 Aligned_cols=301 Identities=10% Similarity=0.007 Sum_probs=205.6
Q ss_pred CchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH---hCCC
Q 012238 101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER---YFPG 177 (467)
Q Consensus 101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~---~~~g 177 (467)
++++.+.+++.+.+... .|.+.....++|+++++++.. +++++ |+||++++.++ +... +.+|
T Consensus 10 ~~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~~~~~~~~g 74 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTL--YRNFSEFSADR 74 (375)
T ss_dssp CCCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHSSCCCTTS
T ss_pred CCCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHhcccCCCC
Confidence 34888999999987543 244667889999999999742 27888 99999999998 4444 5689
Q ss_pred CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012238 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 257 (467)
Q Consensus 178 d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~ 257 (467)
|+|+++.|+|..+...++..|++++.+++++ ++.+|++.+++.++ +++++++++++ ||.+.+. ++|.++
T Consensus 75 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~---~~~~~v~~~~~---tG~~~~l---~~i~~l 143 (375)
T 2fnu_A 75 NEIITTPISFVATANMLLESGYTPVFAGIKN--DGNIDELALEKLIN---ERTKAIVSVDY---AGKSVEV---ESVQKL 143 (375)
T ss_dssp CEEEECSSSCTHHHHHHHHTTCEEEECCBCT--TSSBCGGGSGGGCC---TTEEEEEEECG---GGCCCCH---HHHHHH
T ss_pred CEEEECCCccHhHHHHHHHCCCEEEEeccCC--CCCCCHHHHHhhcC---cCceEEEEeCC---cCCccCH---HHHHHH
Confidence 9999999999999999999999999999843 33789999998886 46777776554 9999875 577777
Q ss_pred HHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238 258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARCCEVAVI 335 (467)
Q Consensus 258 ~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~ 335 (467)
|+++|+++|+|++|....... .. .+ ... ..+++.||| |.+++ | +|+++ +..++++++.
T Consensus 144 ~~~~~~~li~D~a~~~~~~~~---~~-~~----~~~-~~i~~~s~s~~K~~~~-g--~g~~~-~~~~~~~~~~------- 203 (375)
T 2fnu_A 144 CKKHSLSFLSDSSHALGSEYQ---NK-KV----GGF-ALASVFSFHAIKPITT-A--EGGAV-VTNDSELHEK------- 203 (375)
T ss_dssp HHHHTCEEEEECTTCTTCEET---TE-ET----TSS-SSEEEEECCTTSSSCC-S--SCEEE-EESCHHHHHH-------
T ss_pred HHHcCCEEEEECccccCCeEC---Ce-ec----ccc-CCeEEEeCCCCCCccc-c--CceEE-EeCCHHHHHH-------
Confidence 999999999999987544211 10 01 111 147788888 99985 7 78886 1245777776
Q ss_pred HHHHHHHhhccCc---------------c-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 336 QVKSQLKRLARPM---------------Y-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 336 ~~~~~l~~~~~~~---------------~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
++...... . ...+.+...++...+ +.+++..++++++++++.+.|+ ++
T Consensus 204 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~l~~~L~-~~ 267 (375)
T 2fnu_A 204 -----MKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL----------KKAPFLMQKREEAALTYDRIFK-DN 267 (375)
T ss_dssp -----HHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred -----HHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhh-cC
Confidence 43332111 1 123333322222111 1245677788888999999998 75
Q ss_pred CCCCCcccccC----Ccc-eEEec--C---C-CHHHHHHHHHcccEEEeC----C-----------------------C-
Q 012238 400 KSGKDWSFILR----QIG-MFSFT--G---L-NKAQSDNMTNKWHVYMTK----D-----------------------G- 440 (467)
Q Consensus 400 g~~~~~~~~~~----~~g-~f~~~--~---l-~~~~~~~ll~~~gI~v~~----g-----------------------g- 440 (467)
. + +++..+ .++ ++.|+ . . +.+.+.+.|.++||.+.. + +
T Consensus 268 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (375)
T 2fnu_A 268 P--Y-FTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAE 344 (375)
T ss_dssp S--S-EEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHE
T ss_pred C--C-ccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCE
Confidence 2 1 454443 123 22233 2 2 334444444556999872 1 2
Q ss_pred -eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 441 -RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 -Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++. .+++++++++++|+++++++
T Consensus 345 lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 345 ISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 888764 37799999999999998765
No 179
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.92 E-value=4.2e-24 Score=219.64 Aligned_cols=329 Identities=12% Similarity=0.098 Sum_probs=209.4
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcC------CCCcchHHHHHHHHHHHhCCCCccccc--Cceeee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNKVTAELLFGADNSVLKE--QRVATV 155 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y------~~~~G~~~lr~aia~~l~~~~~~~~~~--~~i~~~ 155 (467)
+.|+|..|++ + +++.|++++.+.+......+| ....+..++++.+.+++....|...+. .+|++
T Consensus 45 ~~i~L~a~e~------~-~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~- 116 (483)
T 1rv3_A 45 VGLELIASEN------F-ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP- 116 (483)
T ss_dssp SSEECCTTCC------C-CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-
T ss_pred cCeEEEcCCC------C-CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEE-
Confidence 6899987653 2 378999999888754332233 334456677755555544444433211 24666
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------HhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcC
Q 012238 156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAA 226 (467)
Q Consensus 156 ~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~--------~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~ 226 (467)
++|+ +++.++ +.+.+.|||+|++++|.|..+... ++..|..++.+++. +++++.+|++.+++.+++
T Consensus 117 -~sGs-~an~~~--~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~- 191 (483)
T 1rv3_A 117 -YSGS-PANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL- 191 (483)
T ss_dssp -SSHH-HHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH-
T ss_pred -CCcH-HHHHHH--HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh-
Confidence 6666 777775 455678999999999988776532 23334224555542 235688999999999974
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccC
Q 012238 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKN 305 (467)
Q Consensus 227 ~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 305 (467)
.++++|++ +++||+ .+++ +++|.++|+++|+++|+|++|. ++.+.+. ...++ . ...+++.|++|+
T Consensus 192 -~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~--~~~p~----~--~~div~~s~~K~ 257 (483)
T 1rv3_A 192 -FHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV--VPSPF----E--HCHVVTTTTHKT 257 (483)
T ss_dssp -HCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCGG----G--TCSEEEEESSGG
T ss_pred -cCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCC--CCCCC----C--CCcEEEecCccc
Confidence 35567777 889998 7777 5577888999999999999965 3332211 11111 1 234789999998
Q ss_pred cccCCCccceEEEecCCH--------------HHHhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhH
Q 012238 306 LGLYAERIGAMNVVCSSS--------------DLAARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALF 370 (467)
Q Consensus 306 ~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~ 370 (467)
+ +|+|.||++ +.++ ++.+. +.....+. ..+++.....+...++...
T Consensus 258 l--~GprgG~i~--~~~~~~~~~~~~g~~~~y~~~~~------------~~~~~~~~~~g~~~~~~iaal~~Al~~~--- 318 (483)
T 1rv3_A 258 L--RGCRAGMIF--YRRGVRSVDPKTGKEILYNLESL------------INSAVFPGLQGGPHNHAIAGVAVALKQA--- 318 (483)
T ss_dssp G--CCCSCEEEE--EECSBCC-------CCBCCHHHH------------HHHHHTTTTCCSCCHHHHHHHHHHHHHH---
T ss_pred C--CCCCceEEE--EcchhhhhccccCcchhhHHHHH------------hhhhcCCcccCCccHHHHHHHHHHHHHH---
Confidence 6 688999996 3432 12222 32222222 2233333333333333210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC-cceEEec-----CCCHHHHHHHHHcccEEEe----CC-
Q 012238 371 DEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ-IGMFSFT-----GLNKAQSDNMTNKWHVYMT----KD- 439 (467)
Q Consensus 371 ~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~-~g~f~~~-----~l~~~~~~~ll~~~gI~v~----~g- 439 (467)
....++++.++++++++++.+.|. +.| +++..+. ..++.|+ +++.+.+.++|++.||.+. ||
T Consensus 319 --~~~~~~~~~~~~~~~~~~l~~~L~-~~g----~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~ 391 (483)
T 1rv3_A 319 --MTPEFKEYQRQVVANCRALSAALV-ELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGD 391 (483)
T ss_dssp --TSHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSC
T ss_pred --hChhHHHHHHHHHHHHHHHHHHHH-hcC----CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCC
Confidence 012356788889999999999999 776 4655543 2345554 3466667777778899998 65
Q ss_pred ------C--eEEeccC-C----hhhHHHHHHHHHHHHHh
Q 012238 440 ------G--RISLAGL-S----LAKCEYLADAIIDSYHN 465 (467)
Q Consensus 440 ------g--Ris~~~~-~----~~~i~~~~~~l~~~l~~ 465 (467)
+ ||+++.. + ++++++++++|.++++.
T Consensus 392 ~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 392 KSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp SCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 1 9998743 2 79999999999998764
No 180
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.92 E-value=1.2e-23 Score=210.38 Aligned_cols=277 Identities=13% Similarity=0.070 Sum_probs=188.2
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~ 199 (467)
+.....++++++++++.. + ++++ +.+|++|+.++ +...+.+||+|+++.|+|..+... ++..|+
T Consensus 57 ~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~ai~~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 124 (389)
T 3acz_A 57 GNPTVEQFEEMVCSIEGA-------A-GSAA--FGSGMGAISSS--TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI 124 (389)
T ss_dssp CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHHHHH--HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhCC-------C-eEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 456788999999999643 2 4555 67788999987 333467999999999999976555 577899
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~ 279 (467)
+++.++. .|++.+++.++ ++++++++++|+||||.+++ +++|+++|+++|+++|+|++|..+....
T Consensus 125 ~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~- 190 (389)
T 3acz_A 125 EVDLIDT-------SDVEKVKAAWK---PNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK- 190 (389)
T ss_dssp EEEEECT-------TCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-
T ss_pred EEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC-
Confidence 9988876 48899998886 57889999999999999997 5677888999999999999998765431
Q ss_pred CCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358 (467)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (467)
++ + ...++++.|+||.++.+|.|+ ||++ +.++++++. +...........+...+.
T Consensus 191 -----~~----~-~~~di~~~S~sK~~~~~~~~~~G~v~--~~~~~~~~~------------l~~~~~~~g~~~~~~~~~ 246 (389)
T 3acz_A 191 -----PL----E-LGADIALHSVSKYINGHGDVIGGVSS--AKTAEDIAT------------IKFYRKDAGSLMAPMDAF 246 (389)
T ss_dssp -----GG----G-TTCSEEEEETTTTTTCSSCCCCEEEE--ESSHHHHHH------------HHHHHHHHCCCCCHHHHH
T ss_pred -----cc----c-cCCeEEEECChhhccCCCCceeEEEE--ECcHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence 11 1 235688999999999999999 9885 343377776 443333223345555656
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------CCC-----Cccccc----CCcceEEecCC-CH
Q 012238 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK------SGK-----DWSFIL----RQIGMFSFTGL-NK 422 (467)
Q Consensus 359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g------~~~-----~~~~~~----~~~g~f~~~~l-~~ 422 (467)
++...|... ....++..++...+.+.++ +.+ .++ .+.+.. ..++++.+. + ..
T Consensus 247 ~~~~~l~~l----------~~r~~~~~~~~~~l~~~l~-~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~-l~~~ 314 (389)
T 3acz_A 247 LCARGMKTL----------PIRMQIHMENGLKVAKFLE-QHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFE-MKSF 314 (389)
T ss_dssp HHHHHHTTH----------HHHHHHHHHHHHHHHHHHH-HCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE-ESSH
T ss_pred HHHcCccHH----------HHHHHHHHHHHHHHHHHHH-cCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEE-ECCH
Confidence 555555432 1222333344444555554 321 010 011111 235555432 2 25
Q ss_pred HHHHHHHHcccEEEeC---C-----------------------------C--eEEeccCChhhHHHHHHHHHHHHHh
Q 012238 423 AQSDNMTNKWHVYMTK---D-----------------------------G--RISLAGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 423 ~~~~~ll~~~gI~v~~---g-----------------------------g--Ris~~~~~~~~i~~~~~~l~~~l~~ 465 (467)
+.+.+++++.||.+.. | + |||++. ++.+.+++.|.++++.
T Consensus 315 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 315 EAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALEL 388 (389)
T ss_dssp HHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 5677777777876644 2 3 898886 4788888888888764
No 181
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.92 E-value=1.3e-23 Score=211.15 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=144.2
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~ 199 (467)
+..+..+||+++++++.. ++.|++ .+|++|+.++ +. .+.+||+|+++.|+|...... ++..|+
T Consensus 65 ~~p~~~~l~~~la~~~g~-------~~~i~~---~sG~~ai~~~--~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDGA-------KYCLAF---ASGLAATVTI--TH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp -CHHHHHHHHHHHHHHTC-------SEEEEE---SCHHHHHHHH--HT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred CCchHHHHHHHHHHHhCC-------CcEEEE---CCHHHHHHHH--HH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 567889999999999754 245655 4557899887 33 467999999999999874443 467899
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-CeeEEeccCCCCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFFDVAYQGFASGS 278 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~-~~li~Deay~~~~~~~ 278 (467)
+++.++.. |++.+++.++ ++++++++++|+||||.+++ +++|+++|+++| +++|+|++|..+.+..
T Consensus 132 ~v~~v~~~-------d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~ 198 (403)
T 3cog_A 132 KISFVDCS-------KIKLLEAAIT---PETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR 198 (403)
T ss_dssp EEEEECTT-------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred EEEEECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence 99888762 8899999887 57889999999999999997 567788899999 9999999998876431
Q ss_pred CCCChhHHHHHHhcCCeEEEEecCccCcccCCC-ccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357 (467)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (467)
++ + ...++++.|+||.++.+|. |+||++ +.++++++. +...........+.+.+
T Consensus 199 ------~~----~-~~~div~~S~sK~~~g~~~~~~G~v~--~~~~~l~~~------------l~~~~~~~g~~~~~~~~ 253 (403)
T 3cog_A 199 ------PL----A-LGADISMYSATKYMNGHSDVVMGLVS--VNCESLHNR------------LRFLQNSLGAVPSPIDC 253 (403)
T ss_dssp ------TT----T-TTCSEEEEETTTTTTCSSCCCCEEEE--ECCHHHHHH------------HHHHHHHHCCCCCHHHH
T ss_pred ------cc----c-cCCeEEEEcChhhccCCCCCeEEEEE--ECcHHHHHH------------HHHHHHhcCCCCCHHHH
Confidence 11 1 1357899999999997775 799996 446777776 44433333344566677
Q ss_pred HHHHHHhCC
Q 012238 358 RIVANVVGN 366 (467)
Q Consensus 358 ~~~~~~L~~ 366 (467)
.++...|..
T Consensus 254 ~~~~~~l~~ 262 (403)
T 3cog_A 254 YLCNRGLKT 262 (403)
T ss_dssp HHHHHHHTT
T ss_pred HHHHhhhhH
Confidence 776666654
No 182
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.92 E-value=1.1e-23 Score=212.62 Aligned_cols=322 Identities=15% Similarity=0.146 Sum_probs=190.9
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC-----CCcch----HH-HHHHHHHHHhCCCCcccccCcee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-----PIEGL----AA-FNKVTAELLFGADNSVLKEQRVA 153 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~-----~~~G~----~~-lr~aia~~l~~~~~~~~~~~~i~ 153 (467)
+.++|..+.. +. ++.+.+++.+.+.......|. +.... .+ .++.+++++... . ..+
T Consensus 33 ~~i~l~~~~~------~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~-~~v 98 (425)
T 3ecd_A 33 SQVELIASEN------IV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAG------H-ANV 98 (425)
T ss_dssp HSEECCTTCC------CC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCS------E-EEC
T ss_pred cceeeecccC------CC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCC------C-cee
Confidence 5688876543 22 788999988877432212221 11111 12 224455554321 2 223
Q ss_pred eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc---hHHHHhhCCCCeE--EeeeecCCCCCCChhhHHHHHHcCCC
Q 012238 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN---HKNIFNDARVPWS--EYRYYDPKTVGLDFEGMIADIKAAPG 228 (467)
Q Consensus 154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~---~~~~~~~~G~~~~--~v~~~~~~~~~~d~~~l~~~l~~~~~ 228 (467)
+ +.||++++.++ +...+.+||+|+++.|+|.. +.......|..+. .++.+ ++++.+|++.+++.+++ .
T Consensus 99 ~--~~~Gs~a~~~a--l~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~ 171 (425)
T 3ecd_A 99 Q--PHSGAQANGAV--MLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVS-RDTMLIDYDQVEALAQQ--H 171 (425)
T ss_dssp C--CSSHHHHHHHH--HHHHCCTTCEEEEECC------------------CEEEEECCC-TTTSSCCHHHHHHHHHH--H
T ss_pred e--cCchHHHHHHH--HHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCC-cccCccCHHHHHHHHhh--c
Confidence 4 68889999887 44457799999999999987 3333334555444 44442 34578999999999974 3
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC-CCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
+++++++++|+||+. .++++|.++|++||++||+||+| .++.+.+. ..... .. ..+++.|+||.+
T Consensus 172 ~~~~v~~~~~~~~~~-----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~--~~~~~----~~--~di~~~s~sK~l- 237 (425)
T 3ecd_A 172 KPSLIIAGFSAYPRK-----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGR--HANPV----EH--AHVVTSTTHKTL- 237 (425)
T ss_dssp CCSEEEEECSCCCSC-----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS--SCCGG----GT--CSEEEEESSGGG-
T ss_pred CCcEEEEccccCCCc-----CCHHHHHHHHHHcCCEEEEECcChHhhhhccc--ccCch----hc--CcEEEecCCccc-
Confidence 456778888999753 34578888899999999999994 33332211 11111 11 238899999987
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 386 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~ 386 (467)
+|+|+||++ +.++++.+. +........ .+++...+.++..++.. ...+++++..+++++
T Consensus 238 -~g~~~g~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~a~~~-----~~~~~~~~~~~~~~~ 297 (425)
T 3ecd_A 238 -RGPRGGFVL--TNDEEIAKK------------INSAVFPGLQGGPLMHVIAGKAVAFGE-----ALTDDFKTYIDRVLA 297 (425)
T ss_dssp -CCCSCEEEE--ESCHHHHHH------------HHHHHC-----CCCHHHHHHHHHHHHH-----HTSHHHHHHHHHHHH
T ss_pred -CCCCcEEEE--eCCHHHHHH------------HHhhhCccccCCccHHHHHHHHHHHHH-----HHHHhHHHHHHHHHH
Confidence 678999996 454666665 433322222 23333332222222211 112335678888899
Q ss_pred HHHHHHHHhhhccCCCCCcccccC-CcceEEecC-----CCHHHHHHHHHcccEEEe----CC--------C--eEEecc
Q 012238 387 VRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMT----KD--------G--RISLAG 446 (467)
Q Consensus 387 ~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~----~g--------g--Ris~~~ 446 (467)
+++++.+.|+ +.| +.+..+ .+++++|+. .+.+.+.++++++||.+. |+ + ||++..
T Consensus 298 ~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~ 372 (425)
T 3ecd_A 298 NAQALGDVLK-AGG----VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPA 372 (425)
T ss_dssp HHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHH
T ss_pred HHHHHHHHHH-hCC----CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchh
Confidence 9999999998 776 455543 355566653 356667777777899998 54 1 666432
Q ss_pred -----CChhhHHHHHHHHHHHHHh
Q 012238 447 -----LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 447 -----~~~~~i~~~~~~l~~~l~~ 465 (467)
.+++++++++++|++++++
T Consensus 373 ~~~~~~~~e~i~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 373 GTTRGFGAAEFREVGRLILEVFEA 396 (425)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred heeccCCHHHHHHHHHHHHHHHhc
Confidence 2478999999999998875
No 183
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.92 E-value=8.2e-24 Score=216.81 Aligned_cols=340 Identities=11% Similarity=0.000 Sum_probs=211.4
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC----CcchHHHHHHHHHHHhCCCCcccccCceeeeec
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG 157 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t 157 (467)
+.+.|||+.|..-..-|. .+|.|.+++.+.+.... ..|.. .....+|.+.+++++. ...++|++ +
T Consensus 54 G~~ylD~~s~~~~~~lGh--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~lae~l~~~~~------~~~~~v~~--~ 122 (472)
T 3hmu_A 54 GEEILDAMAGLWCVNIGY--GRDELAEVAARQMRELP-YYNTFFKTTHVPAIALAQKLAELAP------GDLNHVFF--A 122 (472)
T ss_dssp CCEEECTTHHHHTCTTCB--CCHHHHHHHHHHHHHCS-CCCSSSSEECHHHHHHHHHHHHHSC------TTEEEEEE--E
T ss_pred CCEEEECCCchhhccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC------CCCCEEEE--e
Confidence 457899998855333333 26889999988875432 22322 2233445555555521 12568998 9
Q ss_pred CCchhHHHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC------------CeEEeeeec--C-CCCCCC-
Q 012238 158 LSGTGSLRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYYD--P-KTVGLD- 215 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~~--~-~~~~~d- 215 (467)
+||++|++.+.++.... .++++|++..|+|..+.......+. .+..++... . .++ .|
T Consensus 123 ~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~ 201 (472)
T 3hmu_A 123 GGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDP 201 (472)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCH
Confidence 99999999985554332 2467999999999887655444333 233444210 0 111 34
Q ss_pred -------hhhHHHHHHcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHH
Q 012238 216 -------FEGMIADIKAA-PGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV 286 (467)
Q Consensus 216 -------~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~ 286 (467)
++.|++.+++. ++++.++++..++|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ ..+..
T Consensus 202 ~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G---~~~a~ 278 (472)
T 3hmu_A 202 EEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG---NWFGT 278 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS---SSCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccC---ccchh
Confidence 78888888642 24566777777777778755 88889999999999999999999999886432 11222
Q ss_pred HHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHh--hccCccCCCchHHHHHHHHHh
Q 012238 287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKR--LARPMYSNPPVHGARIVANVV 364 (467)
Q Consensus 287 ~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~L 364 (467)
......++++ +|||.++..|+|+||++ +++++++. +.. .....+.+.+.+++.++..+|
T Consensus 279 -~~~~v~pdi~---t~sK~l~gg~~plG~v~---~~~~i~~~------------~~~~~~~~~~t~~~np~a~aAa~aaL 339 (472)
T 3hmu_A 279 -QTMGIRPHIM---TIAKGLSSGYAPIGGSI---VCDEVAHV------------IGKDEFNHGYTYSGHPVAAAVALENL 339 (472)
T ss_dssp -HHHTCCCSEE---EECGGGTTTSSCCEEEE---EEHHHHHH------------HTTSCBCCCCTTTTCHHHHHHHHHHH
T ss_pred -HHhCCCCcee---eechhhhcCCcceEEEE---ECHHHHHh------------cccCCccccCCCCCCHHHHHHHHHHH
Confidence 2223333443 57899985559999995 67888776 521 122224456777777777666
Q ss_pred CChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccC-CCCCcccccCCcceEEec-CCC--------------H-HHHH
Q 012238 365 GNPALFDEWKAEMEMMAGRIK-NVRQKLFDSLSAKDK-SGKDWSFILRQIGMFSFT-GLN--------------K-AQSD 426 (467)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~~-~~r~~l~~~l~~~~g-~~~~~~~~~~~~g~f~~~-~l~--------------~-~~~~ 426 (467)
+.. ++ +...++++ ++.+++.+.|+ ++. .|. +..+.+.|.|+.+. .-+ . ++.+
T Consensus 340 ~~~------~~--~~~~~~~~~~~~~~l~~~L~-~l~~~~~-v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (472)
T 3hmu_A 340 RIL------EE--ENILDHVRNVAAPYLKEKWE-ALTDHPL-VGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRE 409 (472)
T ss_dssp HHH------HH--TTHHHHHHHTHHHHHHHHHH-GGGGSTT-EEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHH
T ss_pred HHH------HH--hHHHHHHHHHHHHHHHHHHH-HHhcCCC-eEEEEecCceEEEEEecCccccccccchhHHHHHHHHH
Confidence 421 11 23445555 55566666665 442 111 33445555544331 111 2 3355
Q ss_pred HHHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 427 NMTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 427 ~ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+++ +||++.++| ||+.. ..+++++++++++|+++++++
T Consensus 410 ~l~~-~Gv~v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 410 RCFA-NNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp HHHH-TTBCCEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6665 599999876 77632 338899999999999998753
No 184
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.92 E-value=3e-23 Score=208.87 Aligned_cols=214 Identities=10% Similarity=0.023 Sum_probs=152.4
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh----CCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----ARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~ 199 (467)
+.....+|++.++++... +++++ ++||++|+.++ +...+.+||+|+++.|+|..+...++. .|+
T Consensus 79 ~~p~~~~l~~~la~~~g~--------~~~~~--~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 146 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGA--------PAAFA--TASGMAAVFTS--LGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV 146 (414)
T ss_dssp CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred CChHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCc
Confidence 445677888888888532 36666 89999999987 444567999999999999988777654 999
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~ 279 (467)
+++.++. .|++.++++++ ++++++++++|+||||.+.+ +++|+++|+++|+++|+|++|.......
T Consensus 147 ~~~~v~~-------~d~~~l~~ai~---~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~- 212 (414)
T 3ndn_A 147 QTVFVDG-------DDLSQWERALS---VPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ- 212 (414)
T ss_dssp EEEEECT-------TCHHHHHHHTS---SCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-
T ss_pred EEEEeCC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 9999876 28999999987 56778889999999999987 5577888999999999999987332111
Q ss_pred CCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHh-hhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAA-RCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357 (467)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (467)
. + .. ...+++.|+||.++.+| +|+||++ .+++.+. . ++..........+...+
T Consensus 213 ---~--~----~~-g~div~~S~sK~l~~~G~~~~G~vv---~~~~~~~~~------------l~~~~~~~g~~~~~~~a 267 (414)
T 3ndn_A 213 ---G--F----PL-GVDVVVYSGTKHIDGQGRVLGGAIL---GDREYIDGP------------VQKLMRHTGPAMSAFNA 267 (414)
T ss_dssp ---C--G----GG-TCSEEEEETTTTTTCSSCCCCEEEE---ECHHHHTTH------------HHHHHHHHCCCCCHHHH
T ss_pred ---c--h----hc-CCCeEeccCCccccCCCCceEEEEE---ECHHHHHHH------------HHHHHHHcCCCCCHHHH
Confidence 0 0 11 23588999999999889 8899985 5666555 4 33222222333444444
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
.++...+. .+....++..++++.+.+.|+ +.
T Consensus 268 ~~~~~~l~----------~l~~r~~~~~~~a~~l~~~L~-~~ 298 (414)
T 3ndn_A 268 WVLLKGLE----------TLAIRVQHSNASAQRIAEFLN-GH 298 (414)
T ss_dssp HHHHHHGG----------GHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHh-cC
Confidence 43333322 133455566677778888887 54
No 185
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.92 E-value=3.6e-23 Score=211.89 Aligned_cols=303 Identities=14% Similarity=0.060 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC---CEEEEcCCCCcch----HHHHhhCCCC
Q 012238 128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNH----KNIFNDARVP 200 (467)
Q Consensus 128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g---d~Vlv~~P~y~~~----~~~~~~~G~~ 200 (467)
..++++.+++++... +++|++ |+|++++++++ +...+.+| ++|+++.|+|+.. ...++..|++
T Consensus 113 ~~~l~~~la~~~g~~------~~~v~~--t~g~t~al~~~--~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~ 182 (465)
T 3e9k_A 113 DESIVGLMKDIVGAN------EKEIAL--MNALTVNLHLL--MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN 182 (465)
T ss_dssp THHHHGGGHHHHTCC------GGGEEE--CSCHHHHHHHH--HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC------cCCEEE--ECCHHHHHHHH--HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence 467899999986543 789999 99999999997 34445454 4599999999874 3466778998
Q ss_pred eEE--eeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012238 201 WSE--YRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (467)
Q Consensus 201 ~~~--v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~ 277 (467)
+.. +++. .++++.+|++.+++.+++..++++++++++||||||.+++. ++|.++|+++|+++|+|+++......
T Consensus 183 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~la~~~g~~vi~D~a~~~g~~~ 259 (465)
T 3e9k_A 183 IEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNI---PAITKAGQAKGCYVGFDLAHAVGNVE 259 (465)
T ss_dssp HHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCH---HHHHHHHHHTTCEEEEECTTTTTTSC
T ss_pred ceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecH---HHHHHHHHHcCCEEEEEhhhhcCCcC
Confidence 742 2221 13457789999999997432478899999999999999986 46777799999999999996533211
Q ss_pred CCCCChhHHHHHHhcCCeEEEEecCccCcc-cCCCccceEEEecCCHHHHhhhhhhhH----HHHHHHHHh---------
Q 012238 278 SLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARCCEVAV----IQVKSQLKR--------- 343 (467)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~~~v~~~~~~~~~~~~~~~----~~~~~~l~~--------- 343 (467)
.+ +. +. ...+++.|++|.++ .|| ++|+++ .++++++....... ......+..
T Consensus 260 ---~~---~~---~~-~~D~~~~s~~K~l~~gp~-~~g~l~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 325 (465)
T 3e9k_A 260 ---LY---LH---DW-GVDFACWCSYKYLNAGAG-GIAGAF---IHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPG 325 (465)
T ss_dssp ---CC---HH---HH-TCCEEEECSSSTTCCCTT-CCCEEE---ECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSS
T ss_pred ---Cc---hh---hc-CCCEEEECcccccccCCC-ceEEEE---EcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCC
Confidence 11 11 11 24578899999993 343 689986 45666544000000 000000000
Q ss_pred hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--------CCCcccccCC----
Q 012238 344 LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS--------GKDWSFILRQ---- 411 (467)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~--------~~~~~~~~~~---- 411 (467)
..+....+++.....++..++. +.+. ..+++++++++++++++.+.|+ ++-. + ++++..|.
T Consensus 326 ~~~~~~gt~~~~~~~a~~aal~---~~~~--~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~-g~~~~~p~~~~~ 398 (465)
T 3e9k_A 326 VCGFRISNPPILLVCSLHASLE---IFKQ--ATMKALRKKSVLLTGYLEYLIK-HNYGKDKAATKKP-VVNIITPSHVEE 398 (465)
T ss_dssp GGGGCCSCCCHHHHHHHHHHHH---HHHH--HCHHHHHHHHHHHHHHHHHHHH-HHCC----------CEEECSCSSGGG
T ss_pred hHHhccCCccHHHHHHHHHHHH---HHHH--cCHHHHHHHHHHHHHHHHHHHH-hhccccccccCCC-CeEEeCCCCHhh
Confidence 0000011344444444443332 1111 1267888999999999999998 6300 1 25666554
Q ss_pred cceEEecCC--C-HHHHHHHHHcccEEEeCC--C--eEEe--ccCChhhHHHHHHHHHHHHHh
Q 012238 412 IGMFSFTGL--N-KAQSDNMTNKWHVYMTKD--G--RISL--AGLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 412 ~g~f~~~~l--~-~~~~~~ll~~~gI~v~~g--g--Ris~--~~~~~~~i~~~~~~l~~~l~~ 465 (467)
.|.++++.+ + .++.+.|.+ +||.+..+ + |||+ ...+.+++++++++|++++++
T Consensus 399 ~g~~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 399 RGCQLTITFSVPNKDVFQELEK-RGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp BCSCEEEEECCTTCCHHHHHHT-TTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred cccEEEEEecCCHHHHHHHHHH-CCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 244544432 2 344555554 59988754 3 9987 233779999999999999865
No 186
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.91 E-value=6.6e-23 Score=205.42 Aligned_cols=301 Identities=15% Similarity=0.035 Sum_probs=197.7
Q ss_pred CCchHHHHHHHHHHHhcCCCCcCCCCcc--hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCC
Q 012238 100 PYVLDVVKKAENLMLERGENKEYLPIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFP 176 (467)
Q Consensus 100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~ 176 (467)
|.+++.+.+++.+.+.. .|.+..| ..++|+++++++.. +++++ ++||++++.++ +... +.+
T Consensus 8 p~~~~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~l~~~~ 71 (394)
T 1o69_A 8 PHMGGNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLA--LRVAGVKQ 71 (394)
T ss_dssp ----CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCT
T ss_pred CCCCHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHcCCCC
Confidence 33466778888777754 3656567 89999999999743 47888 99999999997 3434 569
Q ss_pred CCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238 177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (467)
Q Consensus 177 gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~ 256 (467)
||+|+++.|+|..+...++..|++++.++.+ +++.+|++.+++.+++.+.++++++++ ||||...+ +++|.+
T Consensus 72 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~---~~~G~~~~---l~~i~~ 143 (394)
T 1o69_A 72 DDIVLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILT---HLYGNAAK---MDEIVE 143 (394)
T ss_dssp TCEEEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCCCC---HHHHHH
T ss_pred CCEEEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEE---CCCCChhh---HHHHHH
Confidence 9999999999999999999999999999984 467899999999998532246677765 38997654 557777
Q ss_pred HHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHH
Q 012238 257 VIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVI 335 (467)
Q Consensus 257 ~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~ 335 (467)
+|+++|+++|+||+|. ++.+.+. .. ..... +.+.||||..+++|.|+||++ +.++++++.
T Consensus 144 l~~~~~~~li~Dea~~~g~~~~~~--~~------~~~~~--~~~~s~s~~K~l~~~~~G~~~--~~~~~l~~~------- 204 (394)
T 1o69_A 144 ICKENDIVLIEDAAEALGSFYKNK--AL------GTFGE--FGVYSYNGNKIITTSGGGMLI--GKNKEKIEK------- 204 (394)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTE--ET------TSSSS--EEEEECCTTSSSCCSSCEEEE--ESCHHHHHH-------
T ss_pred HHHHcCCEEEEECcCcccceeCCc--cc------ccccC--cEEEEEeCCccCCCCCceEEE--ECCHHHHHH-------
Confidence 7999999999999998 5554321 10 01112 455666544455678999996 446787777
Q ss_pred HHHHHHHhhccCccCC--------------CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238 336 QVKSQLKRLARPMYSN--------------PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 401 (467)
Q Consensus 336 ~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~ 401 (467)
+.......... .+.+...++...+. .+++..++++++++++.+.|+ ++ +
T Consensus 205 -----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~----------~l~~~~~~~~~~~~~l~~~L~-~~-~ 267 (394)
T 1o69_A 205 -----ARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME----------VLEQRVLKKREIYEWYKEFLG-EY-F 267 (394)
T ss_dssp -----HHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT----------THHHHHHHHHHHHHHHHHHHT-TT-E
T ss_pred -----HHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc-cc-c
Confidence 44332221111 22232222211121 144567788888899999988 64 2
Q ss_pred CCCcccccCC----cceE-Ee--cC-----------------------CCHHHHHHHHHcccEEEeCCC-----------
Q 012238 402 GKDWSFILRQ----IGMF-SF--TG-----------------------LNKAQSDNMTNKWHVYMTKDG----------- 440 (467)
Q Consensus 402 ~~~~~~~~~~----~g~f-~~--~~-----------------------l~~~~~~~ll~~~gI~v~~gg----------- 440 (467)
++.++. ++++ ++ ++ .+.+.+.+.|.++||.++++.
T Consensus 268 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~ 343 (394)
T 1o69_A 268 ----SFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKG 343 (394)
T ss_dssp ----ECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTT
T ss_pred ----cccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhc
Confidence 222221 2321 22 22 123344444555799998761
Q ss_pred ------------------eEEeccCChhhHHHHHHHHHHHHH
Q 012238 441 ------------------RISLAGLSLAKCEYLADAIIDSYH 464 (467)
Q Consensus 441 ------------------Ris~~~~~~~~i~~~~~~l~~~l~ 464 (467)
|.+....+++++++++++|+++++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 344 AKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp CEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 111122588999999999999875
No 187
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.91 E-value=9.6e-23 Score=204.07 Aligned_cols=213 Identities=15% Similarity=0.101 Sum_probs=157.9
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~ 199 (467)
+.....++++.+++++.. +++++ ++||++|+.++ +...+.+||+|+++.|+|..+...+ +..|+
T Consensus 64 ~~~~~~~l~~~la~~~g~--------~~~~~--~~sGt~A~~~a--l~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 131 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDA--------AFGRA--FSSGMAAADCA--LRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV 131 (392)
T ss_dssp CCHHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred CChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence 556788999999999643 25666 79999999998 4445779999999999998776665 67899
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~ 279 (467)
+++.++. .|++.+++.++ ++++++++++|+||||.+.+ +++|+++|+++|+++|+|++|......
T Consensus 132 ~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~-- 196 (392)
T 3qhx_A 132 EYTPVAL-------ADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQ-- 196 (392)
T ss_dssp EEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC--
T ss_pred EEEEeCC-------CCHHHHHHhhC---CCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccC--
Confidence 8888876 28999999987 57889999999999999987 567888899999999999998755332
Q ss_pred CCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHH
Q 012238 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGAR 358 (467)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (467)
... .. ..++++.|+||.++.+| .|+||++ +.++++.+. +...........+...+.
T Consensus 197 --~~~------~~-~~di~~~S~sK~lg~~g~~~~G~v~--~~~~~~~~~------------l~~~~~~~g~~~~~~~~~ 253 (392)
T 3qhx_A 197 --QPL------SL-GADVVLHSTTKYIGGHSDVVGGALV--TNDEELDQS------------FAFLQNGAGAVPGPFDAY 253 (392)
T ss_dssp --CGG------GG-TCSEEEEETTTTTTCSSCCCCEEEE--ESCHHHHHH------------HHHHHHHHCCCCCHHHHH
T ss_pred --ChH------Hh-CCcEEEEcCccccCCCCCceEEEEE--ECcHHHHHH------------HHHHHHhcCCCCCHHHHH
Confidence 111 11 34588999999999888 7899996 455677776 443333334456666666
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238 359 IVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 396 (467)
Q Consensus 359 ~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~ 396 (467)
++...+.. +....++..++.+.+.+.|+
T Consensus 254 ~~~~~l~~----------l~~~~~~~~~~~~~l~~~L~ 281 (392)
T 3qhx_A 254 LTMRGLKT----------LVLRMQRHSENAAAVAEFLA 281 (392)
T ss_dssp HHHHHHTT----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhH----------HHHHHHHHHHHHHHHHHHHh
Confidence 66555543 22334455566666777776
No 188
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.91 E-value=4.1e-23 Score=204.87 Aligned_cols=296 Identities=16% Similarity=0.108 Sum_probs=202.1
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEE
Q 012238 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV 180 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~V 180 (467)
+++.+.+++.+.+..+ .|.+..+..++|+++++++.. +++++ ++||++|+.++ +... +.+||+|
T Consensus 14 ~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~sGt~al~~a--l~~~~~~~gd~V 78 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRHG---QYILGPEVTELEDRLADFVGA--------KYCIS--CANGTDALQIV--QMALGVGPGDEV 78 (367)
T ss_dssp HHHHHHHHHHHHHHHC---CCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred cCHHHHHHHHHHHhcC---CccCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHhCCCCcCEE
Confidence 3678888888877653 466778899999999999743 26777 89999999997 4444 5699999
Q ss_pred EEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012238 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE 260 (467)
Q Consensus 181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~ 260 (467)
+++.|+|..+...++..|++++.++++ ++++.+|++.+++.++ +++++++ |+||||...+. ++|.++|++
T Consensus 79 i~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~~~~G~~~~~---~~i~~la~~ 148 (367)
T 3nyt_A 79 ITPGFTYVATAETVALLGAKPVYVDID-PRTYNLDPQLLEAAIT---PRTKAII---PVSLYGQCADF---DAINAIASK 148 (367)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGTGGGCC---TTEEEEC---CBCGGGCCCCH---HHHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHhcC---cCCcEEE---eeCCccChhhH---HHHHHHHHH
Confidence 999999999999999999999999985 4457899999999886 5677766 78999987664 567777999
Q ss_pred cCCeeEEeccCCCC-CCCCCCCChhHHHHHHhcCCeEEEEecC--ccCcccCCCccceEEEecCCHHHHhhhhhhhHHHH
Q 012238 261 KNHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQV 337 (467)
Q Consensus 261 ~~~~li~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~ 337 (467)
+|+++|+|++|... .++. ... ... ..+++.|| +|.++.+|. .|+++ +.++++.+.
T Consensus 149 ~~~~li~D~a~~~g~~~~~---~~~-----~~~--~di~~~Sf~~~K~l~~~g~-gg~~~--~~~~~l~~~--------- 206 (367)
T 3nyt_A 149 YGIPVIEDAAQSFGASYKG---KRS-----CNL--STVACTSFFPSAPLGCYGD-GGAIF--TNDDELATA--------- 206 (367)
T ss_dssp TTCCBEEECTTTTTCEETT---EET-----TSS--SSEEEEECCTTSSSCCSSC-CEEEE--ESCHHHHHH---------
T ss_pred cCCEEEEECccccCCeECC---eec-----cCC--CCEEEEECCCCCcCCCcCc-eeEEE--eCCHHHHHH---------
Confidence 99999999998643 2221 000 011 15778887 899996687 78875 567877776
Q ss_pred HHHHHhhccC------------ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 012238 338 KSQLKRLARP------------MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDW 405 (467)
Q Consensus 338 ~~~l~~~~~~------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~ 405 (467)
++..... .....+.+.+.++...+. .+++..++.+++++++.+.|+ ++++
T Consensus 207 ---~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~----------~~~~~~~~~~~~~~~~~~~L~-~~~~---- 268 (367)
T 3nyt_A 207 ---IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE----------IFEEEIALRQKVAAEYDLSLK-QVGI---- 268 (367)
T ss_dssp ---HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHH-HTTC----
T ss_pred ---HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc-cCCe----
Confidence 4433221 122344444444333322 234455666677788888888 7653
Q ss_pred cccc-CCc---ceEE-ecCC-CHHHHHHHHHcccEEEeCCC----------------------------eEEec-cCChh
Q 012238 406 SFIL-RQI---GMFS-FTGL-NKAQSDNMTNKWHVYMTKDG----------------------------RISLA-GLSLA 450 (467)
Q Consensus 406 ~~~~-~~~---g~f~-~~~l-~~~~~~~ll~~~gI~v~~gg----------------------------Ris~~-~~~~~ 450 (467)
.+.. +.+ .++. .+.. +.+.+.+.|+++||.+..+. ||++. .++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~ 348 (367)
T 3nyt_A 269 GTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTA 348 (367)
T ss_dssp CCCCCCTTEECCCSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHH
T ss_pred eccCCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHH
Confidence 2211 111 1211 1222 45555555555699776430 55543 35889
Q ss_pred hHHHHHHHHHHH
Q 012238 451 KCEYLADAIIDS 462 (467)
Q Consensus 451 ~i~~~~~~l~~~ 462 (467)
+++++++.|++.
T Consensus 349 ~i~~v~~~~~~~ 360 (367)
T 3nyt_A 349 SIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 189
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.7e-23 Score=213.24 Aligned_cols=321 Identities=16% Similarity=0.119 Sum_probs=203.8
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC---cchHHH------H-HHHHHHHhCCCCcccccCcee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EGLAAF------N-KVTAELLFGADNSVLKEQRVA 153 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~---~G~~~l------r-~aia~~l~~~~~~~~~~~~i~ 153 (467)
+.|+|..+.. +. ++.+.+++.+.+.......|... .|.... . +.+++++... . ..+
T Consensus 46 ~~i~l~~~~~------~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~------~-~~v 111 (447)
T 3h7f_A 46 DTLEMIASEN------FV-PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE------F-ANV 111 (447)
T ss_dssp HSEECCTTCC------CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------E-EEC
T ss_pred CceeEecCCC------CC-CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC------c-eEE
Confidence 5788865432 22 88899998887643333344321 233322 2 5555554321 2 223
Q ss_pred eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhC--CCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (467)
Q Consensus 154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 228 (467)
+ +++|++++..+ +...+.+||+|++++|+|..+.. .+... +..++.++++ ++++.+|++.+++.+++ .
T Consensus 112 ~--~~sGs~a~~~a--~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~ 184 (447)
T 3h7f_A 112 Q--PHSGAQANAAV--LHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD-PATHLIDMDAVRATALE--F 184 (447)
T ss_dssp C--CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC-TTTCSCCHHHHHHHHHH--H
T ss_pred E--eCCHHHHHHHH--HHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcC-cccCCcCHHHHHHHHHh--c
Confidence 2 57788999887 45567799999999999876321 11222 3344555553 34577999999999964 3
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc
Q 012238 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 307 (467)
+++++++++|+||++. ++++|.++|+++|+++|+||+|. ++.+.+..... . . ...+++.|+||.+
T Consensus 185 ~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~----~--~~di~~~s~sK~l- 250 (447)
T 3h7f_A 185 RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--V----P--HADVVSTTVHKTL- 250 (447)
T ss_dssp CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--T----T--TCSEEEEESSGGG-
T ss_pred CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--C----C--CCcEEEecCCcCC-
Confidence 4568888899999987 57788888999999999999963 33322110110 1 1 1237799999987
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc-CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY-SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 386 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~ 386 (467)
+|+|.||++ .++++++. +.....+.. .+++...+.++..++.. .. .+++++..+++.+
T Consensus 251 -~G~~gG~i~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~~a~~~a~~~--~~---~~~~~~~~~~~~~ 309 (447)
T 3h7f_A 251 -GGGRSGLIV---GKQQYAKA------------INSAVFPGQQGGPLMHVIAGKAVALKI--AA---TPEFADRQRRTLS 309 (447)
T ss_dssp -CCCSCEEEE---ECGGGHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHH--TT---SHHHHHHHHHHHH
T ss_pred -CCCCeEEEE---ECHHHHHH------------HhhhcCCcccCCccHHHHHHHHHHHHH--hh---CHHHHHHHHHHHH
Confidence 489999995 67777776 444333332 23333322333322221 00 1235677888889
Q ss_pred HHHHHHHHhhhcc-----CCCCCccccc-CCcceEEecC-----CCHHHHHHHHHcccEEEe----CC---------C-e
Q 012238 387 VRQKLFDSLSAKD-----KSGKDWSFIL-RQIGMFSFTG-----LNKAQSDNMTNKWHVYMT----KD---------G-R 441 (467)
Q Consensus 387 ~r~~l~~~l~~~~-----g~~~~~~~~~-~~~g~f~~~~-----l~~~~~~~ll~~~gI~v~----~g---------g-R 441 (467)
+++++.+.|+ +. | +.... +..+.++|+. ++.+.+.++++++||.+. ++ + |
T Consensus 310 ~~~~l~~~L~-~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lR 384 (447)
T 3h7f_A 310 GARIIADRLM-APDVAKAG----VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLR 384 (447)
T ss_dssp HHHHHHHHHT-SHHHHHTT----CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEE
T ss_pred HHHHHHHHHH-hccccCCC----eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCcee
Confidence 9999999998 76 6 34443 3345566653 366778888888899988 43 1 8
Q ss_pred EEecc-----CChhhHHHHHHHHHHHHHh
Q 012238 442 ISLAG-----LSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 442 is~~~-----~~~~~i~~~~~~l~~~l~~ 465 (467)
|+... ++++++++++++|.+++++
T Consensus 385 ig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 385 IGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp EECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred ccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 87542 4789999999999998864
No 190
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.91 E-value=2.4e-23 Score=209.86 Aligned_cols=310 Identities=16% Similarity=0.171 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHhcCCCCcCC------CCcchHH----HHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHH
Q 012238 103 LDVVKKAENLMLERGENKEYL------PIEGLAA----FNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE 172 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~----lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~ 172 (467)
++.+.+++.+.+.......|. .....+. .++.+++++.. ++++|++ ++ |++++.++ +..
T Consensus 43 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~v~~--~s-Gs~a~~~a--~~~ 111 (420)
T 3gbx_A 43 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA------DYANVQP--HS-GSQANFAV--YTA 111 (420)
T ss_dssp CHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC------SEEECCC--SS-HHHHHHHH--HHH
T ss_pred CHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC------CCceeEe--cC-cHHHHHHH--HHH
Confidence 788999998877432212221 1222223 33455665432 2556655 55 58888887 445
Q ss_pred HhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q 012238 173 RYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPE 249 (467)
Q Consensus 173 ~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~ 249 (467)
.+.+||+|+++.|+|..+. ..+...|..+..+++..+.++.+|++.+++.+++ .+++++++++|+||+ ..+
T Consensus 112 ~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~--~~~-- 185 (420)
T 3gbx_A 112 LLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKE--HKPKMIIGGFSAYSG--VVD-- 185 (420)
T ss_dssp HCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHH--HCCSEEEECCTTCCS--CCC--
T ss_pred hcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHh--cCCeEEEEecCccCC--ccC--
Confidence 5779999999999997743 2223334434433332245677999999999985 246688888899985 444
Q ss_pred HHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH---HH
Q 012238 250 QWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS---DL 325 (467)
Q Consensus 250 ~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~---~~ 325 (467)
+++|.++|++||+++|+||+|. ++...+. .... .....+++.|+||.++ |.|.||++ .++ ++
T Consensus 186 -l~~l~~l~~~~~~~li~De~~~~~~~~~~~--~~~~------~~~~di~~~s~sK~~~--g~~gg~~~---~~~~~~~~ 251 (420)
T 3gbx_A 186 -WAKMREIADSIGAYLFVDMAHVAGLIAAGV--YPNP------VPHAHVVTTTTHKTLA--GPRGGLIL---AKGGDEEL 251 (420)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTHHHHHTTS--SCCS------TTTSSEEEEESSGGGC--SCSCEEEE---ESSCCHHH
T ss_pred -HHHHHHHHHHcCCEEEEECCcchhceeccc--CCcc------cccCCEEEeecccCCC--CCCceEEE---EcCCcHHH
Confidence 6788888999999999999964 2222110 0000 0123488999999985 55568885 444 55
Q ss_pred HhhhhhhhHHHHHHHHHhhccCc-cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 012238 326 AARCCEVAVIQVKSQLKRLARPM-YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKD 404 (467)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~ 404 (467)
.+. +....... ..+++...+.++..++.. . ..+++++++++++++++++.+.|+ +.|
T Consensus 252 ~~~------------~~~~~~~~~~~~~~~~~~~a~~~a~~~--~---~~~~~~~~~~~~~~~~~~l~~~L~-~~g---- 309 (420)
T 3gbx_A 252 YKK------------LNSAVFPSAQGGPLMHVIAGKAVALKE--A---MEPEFKVYQQQVAKNAKAMVEVFL-NRG---- 309 (420)
T ss_dssp HHH------------HHHHHC----CCCCHHHHHHHHHHHHH--T---TSHHHHHHHHHHHHHHHHHHHHHH-HTT----
T ss_pred HHH------------hhhhcCCCCCCCcchhHHHHHHHHHHH--H---HhHhHHHHHHHHHHHHHHHHHHHH-hcC----
Confidence 555 43332222 223333333333322211 0 023356788889999999999998 766
Q ss_pred cccccC-CcceEEecC-----CCHHHHHHHHHcccEEEeC-------C------C-eEEecc-----CChhhHHHHHHHH
Q 012238 405 WSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMTK-------D------G-RISLAG-----LSLAKCEYLADAI 459 (467)
Q Consensus 405 ~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~-------g------g-Ris~~~-----~~~~~i~~~~~~l 459 (467)
+.+..+ ..+.++|+. .+.+.+.++++++||.+.+ + | ||++.. ++++++++++++|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l 389 (420)
T 3gbx_A 310 YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWM 389 (420)
T ss_dssp CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHH
Confidence 455443 345565543 3566777777778999987 3 1 888753 3578999999999
Q ss_pred HHHHHh
Q 012238 460 IDSYHN 465 (467)
Q Consensus 460 ~~~l~~ 465 (467)
++++++
T Consensus 390 ~~~l~~ 395 (420)
T 3gbx_A 390 CDVLDN 395 (420)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 998865
No 191
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.91 E-value=8.1e-24 Score=212.37 Aligned_cols=321 Identities=15% Similarity=0.156 Sum_probs=203.7
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCC------CCcchHHHH----HHHHHHHhCCCCcccccCcee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFN----KVTAELLFGADNSVLKEQRVA 153 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr----~aia~~l~~~~~~~~~~~~i~ 153 (467)
.+++++.+.| . ++.+.+++.+.+.......|. ......+++ +++++++... ++.++
T Consensus 25 ~~~~~~~~~~-------~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~------~~~i~ 90 (405)
T 2vi8_A 25 KIELIASENF-------V-SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE------HANVQ 90 (405)
T ss_dssp SEECCTTCCC-------C-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEECC
T ss_pred ceeeccCccc-------C-CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC------ceEEE
Confidence 5666654332 2 788999988877432212221 112334444 5888886432 34454
Q ss_pred eeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-H--HhhCCC--CeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238 154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-I--FNDARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (467)
Q Consensus 154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~-~--~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 228 (467)
+ ++| ++++.++ +...+.+||+|+++.|+|..+.. . +...|. +++.++++ ++++.+|++.+++.+++ .
T Consensus 91 ~--~sG-t~a~~~a--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~ 162 (405)
T 2vi8_A 91 P--HSG-AQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-PETHVIDYDDVREKARL--H 162 (405)
T ss_dssp C--SSH-HHHHHHH--HHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHH--H
T ss_pred e--cCc-HHHHHHH--HHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccc-cccCCcCHHHHHHHHHh--c
Confidence 4 444 9999998 44446799999999999987743 1 123343 66666653 34678999999999974 1
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcc-
Q 012238 229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG- 307 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~- 307 (467)
+++++++ +|+|+ |...+ +++|.++|++||+++|+||+|.....+. +..... + . ...+++.|+||.++
T Consensus 163 ~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~---~-~--~~di~~~s~sK~~~g 230 (405)
T 2vi8_A 163 RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAA-GLHPNP---V-P--YAHFVTTTTHKTLRG 230 (405)
T ss_dssp CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHT-TSSCCS---T-T--TCSEEEEESSSTTCC
T ss_pred CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEcccccccccc-CcCCCc---c-c--cCCEEEEeccccCCC
Confidence 4456665 44554 34444 6788888999999999999987322111 011111 1 1 12388999999997
Q ss_pred cCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCC-chHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 012238 308 LYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNP-PVHGARIVANVVGNPALFDEWKAEMEMMAGRIKN 386 (467)
Q Consensus 308 ~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~ 386 (467)
++| ||++ .++++++. +.........+. +.....++..++... . ...+++.++++++
T Consensus 231 ~~g---G~~~---~~~~~~~~------------l~~~~~~~~~~~~~~~~~aa~~~al~~~--~---~~~~~~~~~~~~~ 287 (405)
T 2vi8_A 231 PRG---GMIL---CQEQFAKQ------------IDKAIFPGIQGGPLMHVIAAKAVAFGEA--L---QDDFKAYAKRVVD 287 (405)
T ss_dssp CSC---EEEE---ECHHHHHH------------HHHHHTTTTCSSCCHHHHHHHHHHHHHH--H---SHHHHHHHHHHHH
T ss_pred CCC---eEEE---EcHHHHHH------------HHhhhcccccCCCCHHHHHHHHHHHHHH--H---hhhHHHHHHHHHH
Confidence 666 9985 56777776 444333333233 333323333333211 0 1246788899999
Q ss_pred HHHHHHHHhhhccCCCCCcccccC-CcceEEecCC-----CHHHHHHHHHcccEEEeCC------------C--eEEecc
Q 012238 387 VRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFTGL-----NKAQSDNMTNKWHVYMTKD------------G--RISLAG 446 (467)
Q Consensus 387 ~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~~l-----~~~~~~~ll~~~gI~v~~g------------g--Ris~~~ 446 (467)
+++++.+.|+ ++| +++..+ .+++++|+.+ +.+.+.+.+.++||.+.+| + ||+++.
T Consensus 288 ~~~~l~~~L~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~ 362 (405)
T 2vi8_A 288 NAKRLASALQ-NEG----FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAA 362 (405)
T ss_dssp HHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred HHHHHHHHHH-hCC----CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeee
Confidence 9999999999 776 455554 3566777643 4444555556679998863 2 999884
Q ss_pred -----CChhhHHHHHHHHHHHHHhc
Q 012238 447 -----LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 447 -----~~~~~i~~~~~~l~~~l~~~ 466 (467)
++++++++++++|+++++++
T Consensus 363 ~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 363 VTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred eeecCCCHHHHHHHHHHHHHHHhcc
Confidence 57899999999999998754
No 192
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.91 E-value=7.1e-23 Score=208.98 Aligned_cols=317 Identities=14% Similarity=0.068 Sum_probs=210.3
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc---CceeeeecCCchhHHHHHHHHHHHhC----
Q 012238 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE---QRVATVQGLSGTGSLRLAAALIERYF---- 175 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~---~~i~~~~t~ggt~al~l~~~~l~~~~---- 175 (467)
++.+.+++.+.++.+. ..|....+..++++.+.+++....|.+.+. ..+++ |+||++|+.++. .....
T Consensus 55 ~~~v~e~~~~a~~~~~-~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~--t~ggtea~~~al--~a~~~~~~~ 129 (452)
T 2dgk_A 55 DENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTN--TIGSSEACMLGG--MAMKWRWRK 129 (452)
T ss_dssp CHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEE--ESSHHHHHHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHhccCC-CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEE--eCCHHHHHHHHH--HHHHHHHHH
Confidence 5788888888775432 456566787777777766665444443221 13777 999999999873 33221
Q ss_pred ----CC-----CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q 012238 176 ----PG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP 246 (467)
Q Consensus 176 ----~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~ 246 (467)
+| ++|++++ +|..|...++..|++++.+|+++ +++.+|++.|++.++ +++++|++++|+||||.+.
T Consensus 130 ~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~ 204 (452)
T 2dgk_A 130 RMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE 204 (452)
T ss_dssp HHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC
T ss_pred HHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHh---hCCEEEEEEcCCcCCcccC
Confidence 45 5999999 99999999999999999999853 368899999999997 5688999999999999997
Q ss_pred CHHHHHHHHHHHHhc------CCeeEEeccCCCCCC---CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238 247 TPEQWEKIADVIQEK------NHIPFFDVAYQGFAS---GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN 317 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~------~~~li~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (467)
+.+ +|+++|+++ |+++++|++|.++.. .. +. .+. .....-.+++.|++| +++.|+++||++
T Consensus 205 ~l~---~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-~~-~~~----~~~~~~d~~~~~~hK-~~~~~~~~G~~~ 274 (452)
T 2dgk_A 205 FPQ---PLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP-DI-VWD----FRLPRVKSISASGHK-FGLAPLGCGWVI 274 (452)
T ss_dssp CHH---HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT-TC-CCS----TTSTTEEEEEEETTT-TTCCCSSCEEEE
T ss_pred CHH---HHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCc-cc-hhh----cCCCCCcEEEECccc-ccCCCCCeEEEE
Confidence 655 666668885 999999999987642 11 00 000 011123456788899 556889999996
Q ss_pred EecCCHHHH-hhhhhhhHHHHHHHHHhhccCc----------cC--CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238 318 VVCSSSDLA-ARCCEVAVIQVKSQLKRLARPM----------YS--NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRI 384 (467)
Q Consensus 318 ~v~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~----------~~--~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~ 384 (467)
+.+++.+ +. +....... .. ....+.+.++...+. .+.++++.+++
T Consensus 275 --~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--------~~g~~~~~~~~ 332 (452)
T 2dgk_A 275 --WRDEEALPQE------------LVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--------REGYTKVQNAS 332 (452)
T ss_dssp --ESSGGGSCGG------------GCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred --EcCHHHHHHH------------hccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--------HHHHHHHHHHH
Confidence 4555433 33 21100000 01 112333344333331 23466788889
Q ss_pred HHHHHHHHHHhhhccCCCCCccccc-----CCcceEEec--C-----CC-HHHHHHHHHcccEEEe----CC---C----
Q 012238 385 KNVRQKLFDSLSAKDKSGKDWSFIL-----RQIGMFSFT--G-----LN-KAQSDNMTNKWHVYMT----KD---G---- 440 (467)
Q Consensus 385 ~~~r~~l~~~l~~~~g~~~~~~~~~-----~~~g~f~~~--~-----l~-~~~~~~ll~~~gI~v~----~g---g---- 440 (467)
.++++++.+.|+ +++. +++.. +..++++|. + ++ .++.+.|.+ .||.+. |+ +
T Consensus 333 ~~~a~~l~~~L~-~~~~---~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~l 407 (452)
T 2dgk_A 333 YQVAAYLADEIA-KLGP---YEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRL-RGWQVPAFTLGGEATDIVVM 407 (452)
T ss_dssp HHHHHHHHHHHH-TTSS---EEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHH-TTCBCCEEECSTTCTTCEEE
T ss_pred HHHHHHHHHHHH-hCCC---eEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHh-cCCeeeeeeCCcccCCeEEE
Confidence 999999999998 7641 55553 344544442 2 23 445556555 588432 32 2
Q ss_pred eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238 441 RISLAGL-SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 Ris~~~~-~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++.. ++++++++++.|+++++.+
T Consensus 408 Ris~~~~~t~e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 408 RIMCRRGFEMDFAELLLEDYKASLKYL 434 (452)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998753 5689999999999987643
No 193
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.91 E-value=6.9e-22 Score=199.19 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEE
Q 012238 103 LDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~V 180 (467)
++.+.+++. ... .+.|... ....++++.+++++.. +++++ ++||++|++++ +...+.+||+|
T Consensus 35 ~~~~~~~~~---~~~-~~~y~~~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a~~~a--l~~l~~~gd~v 98 (412)
T 2cb1_A 35 LEEGQERFA---TGE-GYVYARQKDPTAKALEERLKALEGA--------LEAVV--LASGQAATFAA--LLALLRPGDEV 98 (412)
T ss_dssp HHHHHHHHH---HCC-SCSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEE
T ss_pred hHHHHHHhc---ccc-CcCcCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEE
Confidence 556666553 222 3566643 6789999999999643 36777 89999999998 44346799999
Q ss_pred EEcCCCCcchHHH----HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238 181 LISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (467)
Q Consensus 181 lv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~ 256 (467)
+++.|+|..+... ++..|++++.++. |++.+++.++ ++++++++++|+||||.+++ +++|++
T Consensus 99 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~ 164 (412)
T 2cb1_A 99 VAAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALS---AKTRAVFVETVANPALLVPD---LEALAT 164 (412)
T ss_dssp EEETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHH
T ss_pred EEeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhc---cCCeEEEEeCCCCCCccccc---HHHHHH
Confidence 9999999875554 4557888888765 3888988886 57889999999999999997 668888
Q ss_pred HHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238 257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN 317 (467)
Q Consensus 257 ~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (467)
+|+++|+++|+|++|..+.+. ... . . ...++++.|+||.++.+|+|+||++
T Consensus 165 l~~~~~~~li~D~~~~~~~~~---~~~--~----~-~~~di~~~S~~K~~~~~~~~~G~~~ 215 (412)
T 2cb1_A 165 LAEEAGVALVVDNTFGAAGAL---CRP--L----A-WGAHVVVESLTKWASGHGSVLGGAV 215 (412)
T ss_dssp HHHHHTCEEEEECGGGTTTTS---CCG--G----G-GTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred HHHHcCCEEEEECCCcccccc---CCc--c----c-cCCeEEEECCcccccCCCCcEEEEE
Confidence 899999999999999876321 111 1 1 2367899999999999999999997
No 194
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.91 E-value=4.3e-23 Score=205.06 Aligned_cols=299 Identities=15% Similarity=0.072 Sum_probs=200.4
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-hCCCCEE
Q 012238 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV 180 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~~~gd~V 180 (467)
+++.+.+++.+.+..+ .|.+..+..++|+++++++.. +++++ ++||++|+.++ +... +.+||+|
T Consensus 15 ~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sgt~al~~~--l~~l~~~~gd~V 79 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCNV--------NYCIG--CGNGLDALHLI--LKGYDIGFGDEV 79 (373)
T ss_dssp HHHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHcCCCCcCEE
Confidence 3678888888877653 366788999999999999743 36777 89999999997 4444 5699999
Q ss_pred EEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 012238 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE 260 (467)
Q Consensus 181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~ 260 (467)
+++.|+|..+...++..|++++.++.+ ++++.+|++.+++.++ +++++++ ++||||...+.+ +|.++|++
T Consensus 80 i~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~---~~~~~v~---~~n~~G~~~~l~---~i~~l~~~ 149 (373)
T 3frk_A 80 IVPSNTFIATALAVSYTGAKPIFVEPD-IRTYNIDPSLIESAIT---EKTKAII---AVHLYGQPADMD---EIKRIAKK 149 (373)
T ss_dssp EEETTSCTHHHHHHHHHSCEEEEECEE-TTTTEECGGGTGGGCC---TTEEEEE---EECCTTCCCCHH---HHHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecc-ccccCcCHHHHHHhcC---CCCeEEE---EECCCcCcccHH---HHHHHHHH
Confidence 999999999999999999999999985 3567899999999886 4667766 689999987755 77777999
Q ss_pred cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCc--cCcccCCCccceEEEecCCHHHHhhhhhhhHHHHH
Q 012238 261 KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVK 338 (467)
Q Consensus 261 ~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~ 338 (467)
+|+++|+|++|.....-+ .... .. ...+++.||| |.++.+|. .|+++ +.++++.+.
T Consensus 150 ~~~~li~D~a~~~g~~~~--~~~~------~~-~~d~~~~S~~~~K~l~~~g~-gg~~~--~~~~~~~~~---------- 207 (373)
T 3frk_A 150 YNLKLIEDAAQAHGSLYK--GMKV------GS-LGDAAGFSFYPAKNLGSLGD-GGAVV--TNDKDLAEK---------- 207 (373)
T ss_dssp HTCEEEEECTTCTTCEET--TEET------TS-SSSEEEEECCTTSSSCCSSS-CEEEE--ESCHHHHHH----------
T ss_pred cCCEEEEECCcccCCEEC--CEec------cc-cccEEEEeCcCCCccCccce-eEEEE--eCCHHHHHH----------
Confidence 999999999987533210 1111 00 1237788877 88874354 67774 566767666
Q ss_pred HHHHhhccCc------------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 012238 339 SQLKRLARPM------------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWS 406 (467)
Q Consensus 339 ~~l~~~~~~~------------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~ 406 (467)
++...... ....+.+.+.+....+ +.+++..++.+++.+++.+.|+ +++ +.
T Consensus 208 --~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~-~~~----~~ 270 (373)
T 3frk_A 208 --IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL----------KYLDKWNEERRKIAQKYIAGIN-NPN----VI 270 (373)
T ss_dssp --HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHCC-CTT----EE
T ss_pred --HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-cCc----eE
Confidence 33222211 1122333333222111 2244566667777788888887 654 22
Q ss_pred ccc-CCcc---eEEe--cCCCHHHHHHHHHcccEEEeCC-----------------------------C--eEEec-cCC
Q 012238 407 FIL-RQIG---MFSF--TGLNKAQSDNMTNKWHVYMTKD-----------------------------G--RISLA-GLS 448 (467)
Q Consensus 407 ~~~-~~~g---~f~~--~~l~~~~~~~ll~~~gI~v~~g-----------------------------g--Ris~~-~~~ 448 (467)
+.. +.+. ++.+ ...+.+.+.+.|+++||.+.++ + ||++. ..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t 350 (373)
T 3frk_A 271 IPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMK 350 (373)
T ss_dssp CCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCC
T ss_pred eccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCC
Confidence 221 1111 1111 1224555555555569988732 1 66664 347
Q ss_pred hhhHHHHHHHHHHHHH
Q 012238 449 LAKCEYLADAIIDSYH 464 (467)
Q Consensus 449 ~~~i~~~~~~l~~~l~ 464 (467)
++++++++++|++...
T Consensus 351 ~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 351 NEEIEYVIDKINAWKL 366 (373)
T ss_dssp HHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8999999999987654
No 195
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.90 E-value=1.3e-22 Score=203.04 Aligned_cols=211 Identities=16% Similarity=0.121 Sum_probs=150.1
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~ 199 (467)
+..+..++|+++|+++.. . ++++ +.+|++|++++ +. .+.+||+|+++.|+|..... .++..|+
T Consensus 53 ~~~~~~~lr~~la~~~g~-------~-~~i~--~~sGt~a~~~a--l~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 119 (393)
T 1n8p_A 53 QNPNRENLERAVAALENA-------Q-YGLA--FSSGSATTATI--LQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGV 119 (393)
T ss_dssp CCHHHHHHHHHHHHHTTC-------S-EEEE--ESCHHHHHHHH--HH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred CChhHHHHHHHHHHHhCC-------C-cEEE--ECChHHHHHHH--HH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 556789999999999643 2 3444 46669999998 33 56799999999999985443 4567899
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc----CCeeEEeccCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK----NHIPFFDVAYQGFA 275 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~----~~~li~Deay~~~~ 275 (467)
+++.++.+ | +.+++.++ ++++++++++|+||||.+++ +++|+++|+++ |+++|+|++|..+.
T Consensus 120 ~v~~v~~~-------d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~ 185 (393)
T 1n8p_A 120 ETSFTNDL-------L-NDLPQLIK---ENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPY 185 (393)
T ss_dssp CCEEESSH-------H-HHHHHHSC---SSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred EEEEeCCC-------h-HHHHHhcc---cCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence 99998762 6 88888886 57889999999999999997 55777779999 99999999988765
Q ss_pred CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCch
Q 012238 276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPV 354 (467)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 354 (467)
.. +.. .. ..++++.|+||.+|.+|+|+ ||++ +.++++++. +...........+.
T Consensus 186 ~~----~~~------~~-~~di~~~S~sK~~g~~G~rigG~~~--~~~~~~~~~------------l~~~~~~~g~~~~~ 240 (393)
T 1n8p_A 186 IS----NPL------NF-GADIVVHSATKYINGHSDVVLGVLA--TNNKPLYER------------LQFLQNAIGAIPSP 240 (393)
T ss_dssp HC----CGG------GG-TCSEEEEETTTTTTCSSCCCCEEEE--ESCHHHHHH------------HHHHHHHHCCCCCH
T ss_pred cC----CHH------Hc-CCeEEEEECcccccCCCCceeEEEE--eCCHHHHHH------------HHHHHHhcCCCCCH
Confidence 42 111 11 35689999999999999999 8875 446777776 33332222233444
Q ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012238 355 HGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLS 396 (467)
Q Consensus 355 ~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~ 396 (467)
..+.++...+.. +....++..++++.+.+.|+
T Consensus 241 ~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~ 272 (393)
T 1n8p_A 241 FDAWLTHRGLKT----------LHLRVRQAALSANKIAEFLA 272 (393)
T ss_dssp HHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHH
Confidence 444444444432 22334444555666666776
No 196
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.90 E-value=1.7e-21 Score=197.33 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=150.4
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~ 199 (467)
+.....++|+.+++++.. ++.+++ .+|++++.++ +...+.+||+|+++.|+|..+... ++..|+
T Consensus 112 ~~~~~~~l~~~lA~l~g~-------~~~v~~---~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 179 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGA-------ESTLLM---ASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGI 179 (445)
T ss_dssp CCHHHHHHHHHHHHHHTC-------SEEEEE---SCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred CChHHHHHHHHHHHHhCC-------CcEEEe---CCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 345567999999999643 234544 5566999997 444577999999999999877664 567899
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGS-FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS 278 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~-~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~ 278 (467)
+++.++. .|++.+++.++ +++ +++++++|+||||.+.+. ++|+++|+++|+++|+|++|.......
T Consensus 180 ~v~~v~~-------~d~~~l~~ai~---~~tv~lV~le~p~NptG~v~dl---~~I~~la~~~g~~livD~a~~~~~~~~ 246 (445)
T 1qgn_A 180 TATVIDP-------ADVGALELALN---QKKVNLFFTESPTNPFLRCVDI---ELVSKLCHEKGALVCIDGTFATPLNQK 246 (445)
T ss_dssp EEEEECS-------SCHHHHHHHHH---HSCEEEEEEESSCTTTCCCCCH---HHHHHHHHHTTCEEEEECTTTCTTTCC
T ss_pred EEEEeCC-------CCHHHHHHHhc---cCCCCEEEEeCCCCCCCcccCH---HHHHHHHHHcCCEEEEECCCcccccCC
Confidence 9888876 28999999998 467 899999999999999985 477777999999999999987543221
Q ss_pred CCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357 (467)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (467)
. . .. ...+++.|+||.++..| .++||++ .++++++. +...........+.+..
T Consensus 247 ----~--~----~~-g~Div~~S~sK~~gg~gd~~~G~l~---~~~~l~~~------------l~~~~~~~g~~~~~~~a 300 (445)
T 1qgn_A 247 ----A--L----AL-GADLVLHSATKFLGGHNDVLAGCIS---GPLKLVSE------------IRNLHHILGGALNPNAA 300 (445)
T ss_dssp ----T--T----TT-TCSEEEECTTTTTTCSSSCCCEEEE---ECHHHHHH------------HHHHHHHHCCCCCHHHH
T ss_pred ----c--c----cc-CCEEEEECCcccccccccceEEEEE---ECHHHHHH------------HHHHHHHhCCCCCHHHH
Confidence 1 1 11 24588999999999666 4789985 67777776 33332222233444443
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
.++...++. +....+++.++++.+.+.|+ +.
T Consensus 301 ~~~~~~l~~----------l~~r~~~~~~~a~~l~~~L~-~~ 331 (445)
T 1qgn_A 301 YLIIRGMKT----------LHLRVQQQNSTALRMAEILE-AH 331 (445)
T ss_dssp HHHHHHGGG----------HHHHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHhHHH----------HHHHHHHHHHHHHHHHHHHh-cC
Confidence 443333321 23344555566777888887 54
No 197
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.89 E-value=9.3e-23 Score=204.55 Aligned_cols=317 Identities=9% Similarity=-0.001 Sum_probs=197.5
Q ss_pred CCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC-CcCCCC--cchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 83 ~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~-~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+..++|+.|.+ .+++.+++++.+....... ..+.+. ....++|+.++++++.. .+++|++ .|+|
T Consensus 39 ~~~~~~~~~~~-------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-----~~~~i~~-~t~g 105 (398)
T 2fyf_A 39 PRDGRFGSGPS-------KVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLP-----DGYEVIL-GNGG 105 (398)
T ss_dssp CSSCBCCSSSC-------CCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-----TTCEEEE-EETC
T ss_pred cCCccccCCCC-------CCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCC-----CCceEEE-eCCc
Confidence 46778876532 2377888887663111000 122232 23577888888886432 1346542 2799
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHHhhC--CCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~-~~~~~~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~ 236 (467)
|+++++++ +...+.+| .+.+..+.|.. ....+... |++++.++.+ ++...+.+ +. +++++++++
T Consensus 106 ~t~al~~~--~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~~-----i~---~~~~~v~~~ 172 (398)
T 2fyf_A 106 ATAFWDAA--AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEPQ-----TD---PSVDVIAWA 172 (398)
T ss_dssp HHHHHHHH--HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCCC-----CC---TTCSEEEEE
T ss_pred hhHHHHHH--HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCcc-----cc---CCCCEEEEe
Confidence 99999998 44445676 23333333321 12244555 8899999874 23333321 22 567788889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM 316 (467)
Q Consensus 237 ~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~ 316 (467)
+|+||||.+++.+++.++ +|+++|+|++|..+... .+ + .. ..+++.|+||.++++| ++||+
T Consensus 173 ~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~---~~---~----~~--~di~~~s~sK~~~~~g-g~g~l 233 (398)
T 2fyf_A 173 HNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP---VD---I----AE--TDAYYFAPQKNFASDG-GLWLA 233 (398)
T ss_dssp SEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC---CC---G----GG--CSEEEECTTSTTCSCS-SEEEE
T ss_pred CcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc---cC---c----cc--CcEEEEecCcccCCCC-ceEEE
Confidence 999999999998877665 89999999998765432 11 1 11 3478999999999876 58998
Q ss_pred EEecCCHHHHhhhhhhhHHHHHHH----------------HHhh-ccCccCCCchHHHHHHHHHhCChhhHHHHHHH--H
Q 012238 317 NVVCSSSDLAARCCEVAVIQVKSQ----------------LKRL-ARPMYSNPPVHGARIVANVVGNPALFDEWKAE--M 377 (467)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~~----------------l~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--l 377 (467)
+ .++++++. +... .+.. ....+.+++...+.++..+|+. + .+. +
T Consensus 234 ~---~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~--~----~~~g~~ 296 (398)
T 2fyf_A 234 I---MSPAALSR--------IEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW--L----VGNGGL 296 (398)
T ss_dssp E---ECHHHHHH--------HHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH--H----HHHTSH
T ss_pred E---ECHHHHHH--------hhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH--H----HHccCH
Confidence 5 67777765 2110 0000 0112334555555555555431 1 222 6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCccccc--C--CcceEEecC----CCH-HHHHHHHHcccEEEeCC------C--
Q 012238 378 EMMAGRIKNVRQKLFDSLSAKDKSGKDWSFIL--R--QIGMFSFTG----LNK-AQSDNMTNKWHVYMTKD------G-- 440 (467)
Q Consensus 378 ~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~--~--~~g~f~~~~----l~~-~~~~~ll~~~gI~v~~g------g-- 440 (467)
++++++++++++++.+.|+ +++ ++++.. + .+++++|+. .+. ++.+.|.+ +||.+.+| +
T Consensus 297 ~~~~~~~~~~~~~l~~~L~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~g~~~~~~~~i 371 (398)
T 2fyf_A 297 DWAVKRTADSSQRLYSWAQ-ERP---YTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRA-NGIVDTEPYRKLGRNQL 371 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HST---TEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHH-TTCBCCSCCTTTCSSEE
T ss_pred HHHHHHHHHHHHHHHHHHH-HcC---CceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHH-CCcEEecCcccCCCCEE
Confidence 7788999999999999998 762 145552 3 345466653 344 44556655 49999874 2
Q ss_pred eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 441 RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 441 Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
||+++. .+++++++++++|+++++++
T Consensus 372 Ris~~~~~t~e~i~~~~~~l~~~l~~~ 398 (398)
T 2fyf_A 372 RVAMFPAVEPDDVSALTECVDWVVERL 398 (398)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHhC
Confidence 999984 37899999999999998764
No 198
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.89 E-value=1.1e-21 Score=200.36 Aligned_cols=287 Identities=13% Similarity=-0.006 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHhCCCCcccccCceeeeecCCchh-HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeee
Q 012238 129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG-SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY 207 (467)
Q Consensus 129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~-al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~ 207 (467)
.++|+.++++++.. ++ +++ |+|||+ ++.++...+....+|+.|+++++.|..+...++..|++++.++..
T Consensus 136 ~~~~~~la~~~g~~------~~-~~~--t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 136 NKILESFFKQLGLN------VH-AIA--TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHHTTCC------CE-EEE--ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHcCCC------CC-EEE--eCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence 34556666664322 33 777 999995 444331111111267789999999999999999999999998864
Q ss_pred c-CCCCCCChhhHHHHH-HcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChh
Q 012238 208 D-PKTVGLDFEGMIADI-KAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS 284 (467)
Q Consensus 208 ~-~~~~~~d~~~l~~~l-~~~-~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~ 284 (467)
+ ++++.+|++.+++.+ +.. ..+++++++++||||||.+.+.+ +|+++|+++|+++++|++|..+..+. ...
T Consensus 207 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~---~I~~la~~~g~~v~vD~A~~~~~~g~---~~~ 280 (456)
T 2z67_A 207 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIV---EIAKICENYDIPHIINGAYAIQNNYY---LEK 280 (456)
T ss_dssp EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHH---HHHHHHHHHTCCEEEECTTTTTCHHH---HHH
T ss_pred ccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHH---HHHHHHHHcCCcEEEECcchHHHHHh---hHH
Confidence 2 346789999999999 420 13677888899999999997755 66777999999999999998776421 001
Q ss_pred HHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHh
Q 012238 285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVV 364 (467)
Q Consensus 285 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 364 (467)
.. .....+ ..+++.|++|.++ .++++||++ +.++++++. +...........+.+.+.++...+
T Consensus 281 ~~-~~~~~~-~D~~~~s~hK~~~-~p~g~G~l~--~~~~~~~~~------------l~~~~~g~~~~~~~~~~~aal~~l 343 (456)
T 2z67_A 281 LK-KAFKYR-VDAVVSSSDKNLL-TPIGGGLVY--STDAEFIKE------------ISLSYPGRASATPVVNTLVSLLSM 343 (456)
T ss_dssp HH-HHHTSC-CSEEEEEHHHHHC-CCSSCEEEE--ESCHHHHHH------------HHTTSCSCBCSHHHHHHHHHHHHH
T ss_pred HH-HhhCCC-CCEEEEcCCCCcC-CCCCeEEEE--EcCHHHHhh------------cCcCCCCCCCCCHHHHHHHHHHHH
Confidence 11 111112 3357889999765 568899996 446777666 432222111122233444433332
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCCcccccCCcceEEecCC--C---HHHHHHHHHcccE-
Q 012238 365 GNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD----KSGKDWSFILRQIGMFSFTGL--N---KAQSDNMTNKWHV- 434 (467)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~----g~~~~~~~~~~~~g~f~~~~l--~---~~~~~~ll~~~gI- 434 (467)
. .+.++++.+++.++++++.+.|+ ++ | +.+..++ +++.| .+ + .++.++|.++ ||
T Consensus 344 ~--------~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~g----~~v~~~~-~~v~~-~~~~~~~~~~l~~~L~~~-gi~ 407 (456)
T 2z67_A 344 G--------SKNYLELVKNQKNSKKLLDELLN-DLSKKTG----GKFLDVE-SPIAS-CISVNSDPVEIAAKLYNL-RVT 407 (456)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHSS----CCBCCCC-CSSEE-EEECSSCHHHHHHHHHHT-TEE
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHH-hcccccC----CEecCCC-CeEEE-EEecccHHHHHHHHHHHc-CCC
Confidence 1 23366788888999999999998 76 5 3555555 43332 22 2 3555566554 64
Q ss_pred --EEe--------------CCC--eEEecc-CChhhHHHHHHHHHHHH
Q 012238 435 --YMT--------------KDG--RISLAG-LSLAKCEYLADAIIDSY 463 (467)
Q Consensus 435 --~v~--------------~gg--Ris~~~-~~~~~i~~~~~~l~~~l 463 (467)
-+. +.+ |+|++. .+++++++++++|++++
T Consensus 408 ~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 408 GPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp SCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 343 223 888773 38899999999998765
No 199
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.89 E-value=2.1e-21 Score=193.27 Aligned_cols=309 Identities=12% Similarity=-0.027 Sum_probs=197.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCcCCC-CcchHHHHHHH-HHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH-h
Q 012238 98 LQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVT-AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-Y 174 (467)
Q Consensus 98 ~~p~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~ai-a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~-~ 174 (467)
.+++ ++.+.+++.+.+..+. |.+ .....+|++++ |+++. . .+++++ ++||++|+.++ +... +
T Consensus 11 ~~~~-~~~i~~a~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~g-~------~~~~v~--~~sgt~al~~a--l~~l~~ 75 (377)
T 3ju7_A 11 STVP-VIEYLDELKEIDASHI---YTNYGPINQRFEQTIMSGFFQ-N------RGAVTT--VANATLGLMAA--IQLKKR 75 (377)
T ss_dssp CCCC-GGGGHHHHHHHHHHTC---CSSSCHHHHHHHHHHHHHTST-T------CSEEEE--ESCHHHHHHHH--HHHHSC
T ss_pred CCCC-cHHHHHHHHHHHHcCC---cccCCHHHHHHHHHHHHHHhC-C------CCeEEE--eCCHHHHHHHH--HHHcCC
Confidence 4444 7778888888876654 332 35688999999 99964 1 346767 89999999997 4444 6
Q ss_pred CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC--cEEEEeCCCCCCCCCCCCHHHHH
Q 012238 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG--SFILLHGCAHNPTGIDPTPEQWE 252 (467)
Q Consensus 175 ~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~--~~~i~i~~p~NPTG~~~~~~~l~ 252 (467)
.|||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++++.. ++ +++++ |+||||...+.+
T Consensus 76 ~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~--~~~~tk~v~---~~~~~G~~~~~~--- 146 (377)
T 3ju7_A 76 KKGKYALMPSFTFPATPLAAIWCGLEPYFIDIS-IDDWYMDKTVLWDKIEE--LKEEVAIVV---PYATFGSWMNLE--- 146 (377)
T ss_dssp TTCCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHHHH--HGGGEEEEC---CBCGGGBCCCCH---
T ss_pred CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHHHhc--CCCCceEEE---EECCCCCccCHH---
Confidence 799999999999999999999999999999984 45788999999999832 34 77776 678999988755
Q ss_pred HHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhh
Q 012238 253 KIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEV 332 (467)
Q Consensus 253 ~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~ 332 (467)
+|.++|+ +|+++|+|+++....... .. .+. ....+-.++..+.+|.++. | +.|+++ +.+++++++
T Consensus 147 ~i~~la~-~~~~vi~D~a~a~g~~~~---~~-~~g--~~~~d~~~~S~~~~K~l~~-g-~gG~~~--~~~~~l~~~---- 211 (377)
T 3ju7_A 147 EYEELEK-KGVPVVVDAAPGFGLMNG---GM-HYG--QDFSGMIIYSFHATKPFGI-G-EGGLIY--SKNEEDIQR---- 211 (377)
T ss_dssp HHHHHHH-TTCCBEEECTTCTTCEET---TE-ETT--TTCSSEEEEECBTTSSSCC-B-SCEEEE--ESCHHHHHH----
T ss_pred HHHHHHh-cCCEEEEECCCccCCeEC---CE-ecc--CCCCcEEEEECCCCCcCCC-C-CcEEEE--ECCHHHHHH----
Confidence 6666688 999999999976432210 00 000 0012233334445699984 5 567764 678888776
Q ss_pred hHHHHHHHHHhhccC------------ccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 012238 333 AVIQVKSQLKRLARP------------MYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDK 400 (467)
Q Consensus 333 ~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g 400 (467)
++.+... .....+.+.+.++...| +.++...++.+++++.+.+.|+ .++
T Consensus 212 --------~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l----------~~l~~~~~~~~~~~~~~~~~L~-~~~ 272 (377)
T 3ju7_A 212 --------IKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM----------KKWDDKLKERTRISEWYKQLLQ-SNG 272 (377)
T ss_dssp --------HHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred --------HHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 4433321 11234444433332222 2244556666677777777787 654
Q ss_pred CCCCcccccCCc--ce--E-Ee-cC--CCHHHHHHHHHcccEEEeCC----------------C-------------eEE
Q 012238 401 SGKDWSFILRQI--GM--F-SF-TG--LNKAQSDNMTNKWHVYMTKD----------------G-------------RIS 443 (467)
Q Consensus 401 ~~~~~~~~~~~~--g~--f-~~-~~--l~~~~~~~ll~~~gI~v~~g----------------g-------------Ris 443 (467)
.-. +.+.+..+ .+ | .+ .+ .+.+.+.+.|+++||.+..+ + ||.
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp 351 (377)
T 3ju7_A 273 LMK-KGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLP 351 (377)
T ss_dssp TTT-TTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEEC
T ss_pred Ccc-ccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECC
Confidence 100 11111111 11 1 11 12 12566666666679987553 0 555
Q ss_pred ec-cCChhhHHHHHHHHHHHHHh
Q 012238 444 LA-GLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 444 ~~-~~~~~~i~~~~~~l~~~l~~ 465 (467)
+. .+++++++++++.|++++..
T Consensus 352 ~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 352 LWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp CCTTCCHHHHHHHHHHHTC----
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc
Confidence 44 45889999999999887754
No 200
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.88 E-value=6.7e-21 Score=196.67 Aligned_cols=321 Identities=12% Similarity=0.060 Sum_probs=210.2
Q ss_pred chHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCce-eeeecCCchhHHHHHHHHHHHhCC----
Q 012238 102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV-ATVQGLSGTGSLRLAAALIERYFP---- 176 (467)
Q Consensus 102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i-~~~~t~ggt~al~l~~~~l~~~~~---- 176 (467)
+++.+.+++.+.++.+. ..|....+..++++.+.+++....|.+.+++++ ..+.|+||++++.++ ++....+
T Consensus 68 ~~~~v~~~l~~~~~~~~-~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a--~~a~~~~~~~~ 144 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNY-VDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLA--GLAFKRKWQNK 144 (502)
T ss_dssp CCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHH--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-CChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHH--HHHHHHHHhHH
Confidence 47888888888775532 334445566777766666665555544323333 222379999999987 3333333
Q ss_pred ----CC-----EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCC
Q 012238 177 ----GA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT 247 (467)
Q Consensus 177 ----gd-----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~ 247 (467)
|+ +|+++.++|..+...++..|++++.+|++ ++++.+|++.+++.++ +++++|++++|+||||.+.+
T Consensus 145 ~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~~ 220 (502)
T 3hbx_A 145 RKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFED 220 (502)
T ss_dssp HHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB-TTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBCC
T ss_pred HHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecC-CCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCcccC
Confidence 76 99999999999999999999999999984 3458899999999997 57788999999999999977
Q ss_pred HHHHHHHHHHHHhc------CCeeEEeccCCCCC----CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238 248 PEQWEKIADVIQEK------NHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN 317 (467)
Q Consensus 248 ~~~l~~l~~~~~~~------~~~li~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (467)
.+ +|.++|+++ |+++++|++|.++. .+....+ + ....-.++..|.+|.++ .+.++||++
T Consensus 221 l~---~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~---~----~~~~~D~v~~s~hK~l~-~p~g~G~~~ 289 (502)
T 3hbx_A 221 VK---LLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD---F----RLPLVKSINVSGHKYGL-VYAGIGWVI 289 (502)
T ss_dssp HH---HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS---T----TSTTEEEEEEETTTTTC-CCSSCEEEE
T ss_pred HH---HHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc---c----CCCCceEEEECcccccC-CCCCeEEEE
Confidence 66 566668888 99999999998664 2211110 0 11234566788899775 567789986
Q ss_pred EecCCHHHHhhhhhhhHHHHHHHHHhhccCc-----------cCCC--chHHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 012238 318 VVCSSSDLAARCCEVAVIQVKSQLKRLARPM-----------YSNP--PVHGARIVANVVGNPALFDEWKAEMEMMAGRI 384 (467)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~--~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~ 384 (467)
+.+++.+.. .......+ .+.+ ..+++.++...+. .+.+.++.++.
T Consensus 290 --~~~~~~l~~------------~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg--------~~g~~~~~~~~ 347 (502)
T 3hbx_A 290 --WRNKEDLPE------------ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG--------HEGYRNVMENC 347 (502)
T ss_dssp --ESSGGGSCG------------GGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred --EeCHHHhhH------------HhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 466554432 11111110 1111 2233333322221 23356777888
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccC--CcceEEec--C---CCHHHHHHHHHcccEEEe----CC---C----eEEecc
Q 012238 385 KNVRQKLFDSLSAKDKSGKDWSFILR--QIGMFSFT--G---LNKAQSDNMTNKWHVYMT----KD---G----RISLAG 446 (467)
Q Consensus 385 ~~~r~~l~~~l~~~~g~~~~~~~~~~--~~g~f~~~--~---l~~~~~~~ll~~~gI~v~----~g---g----Ris~~~ 446 (467)
.++++++.+.|+ +++. +++..+ ..++++|. + ++...+.+.|.++||.+. |. + ||+++.
T Consensus 348 ~~~a~~l~~~L~-~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~ 423 (502)
T 3hbx_A 348 RENMIVLREGLE-KTER---FNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIRE 423 (502)
T ss_dssp HHHHHHHHHHHH-TTTC---EEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCT
T ss_pred HHHHHHHHHHHH-hCCC---EEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCC
Confidence 888889999998 7752 555544 44544432 2 344344444445698753 21 2 998874
Q ss_pred -CChhhHHHHHHHHHHHHHhc
Q 012238 447 -LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 447 -~~~~~i~~~~~~l~~~l~~~ 466 (467)
.+.++++.+++.|+++++.+
T Consensus 424 ~~t~edid~li~~L~~~l~~l 444 (502)
T 3hbx_A 424 DFSRTLAERLVIDIEKVMREL 444 (502)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 36799999999999988754
No 201
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.88 E-value=1.2e-20 Score=191.65 Aligned_cols=180 Identities=14% Similarity=-0.062 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH---------
Q 012238 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER--------- 173 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~--------- 173 (467)
.+.+.+++.+.+... .|.+..+..++|+++++++... ++++ +.+|++++.++ +...
T Consensus 42 ~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~g~~--------~~i~--~~sGt~a~~~a--l~~l~~~~~~~~~ 106 (437)
T 3bb8_A 42 GTKELQLMVEASLDG---WLTTGRFNDAFEKKLGEYLGVP--------YVLT--TTSGSSANLLA--LTALTSPKLGVRA 106 (437)
T ss_dssp CHHHHHHHHHHHHHC---CCBSCHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH--HHHTTCGGGGGGS
T ss_pred CHHHHHHHHHHHHcC---CcCCChHHHHHHHHHHHHHCCC--------cEEE--eCCHHHHHHHH--HHHhhhccccccc
Confidence 567778887776542 3557788999999999997432 4566 78889999987 3333
Q ss_pred hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCHHHHH
Q 012238 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTPEQWE 252 (467)
Q Consensus 174 ~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~-~p~NPTG~~~~~~~l~ 252 (467)
+.+||+|+++.|+|..+...++..|++++.++.++ +++.+|++.+++.++ +++++++++ +++|| .+++
T Consensus 107 ~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~i~---~~~~~v~~~~~~g~~-------~~~~ 175 (437)
T 3bb8_A 107 LKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDI-PTYNVNASLIEAAVS---DKTKAIMIAHTLGNL-------FDLA 175 (437)
T ss_dssp CCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEET-TTTEECGGGHHHHCC---TTEEEEEEECGGGCC-------CCHH
T ss_pred CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccC-ccCCcCHHHHHHhcC---CCCeEEEEeCCCCCh-------hcHH
Confidence 56899999999999999999999999999999853 357899999999986 467777776 45555 3466
Q ss_pred HHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238 253 KIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN 317 (467)
Q Consensus 253 ~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (467)
+|.++|+++|+++|+|++|......+ .... .... .+++.||+|.++++|.|.|+++
T Consensus 176 ~i~~l~~~~~~~li~D~a~~~g~~~~--~~~~------~~~~-d~~~~s~~~~k~l~~g~gg~~~ 231 (437)
T 3bb8_A 176 EVRRVADKYNLWLIEDCCDALGSTYD--GKMA------GTFG-DIGTVSFYPAKHITMGEGGAVF 231 (437)
T ss_dssp HHHHHHHHHTCEEEEECTTCTTCEET--TEET------TSSS-SEEEEECSTTSSSCCSSCEEEE
T ss_pred HHHHHHHHcCCEEEEECccccCceEC--Ceec------cccc-CEEEEECcCCcCCCCCCeEEEE
Confidence 88888999999999999987432111 1111 1111 3678999999999999999985
No 202
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.88 E-value=4.8e-21 Score=193.42 Aligned_cols=159 Identities=13% Similarity=0.033 Sum_probs=126.7
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~ 199 (467)
+.....+|++.+++++... ..++ +.+|++|+.++ +...+.+||+|++++|+|..+.. .++..|+
T Consensus 80 ~~p~~~~le~~lA~l~g~~--------~~v~--~~sG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 147 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLTGAL--------GVLA--LGSGMAAISTA--ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI 147 (430)
T ss_dssp CCHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCCC--------cEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 5677899999999996432 2444 57788999987 45567899999999999988777 6678999
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~ 279 (467)
+++.++.. |++.++++++ ++++++++++|+||||.+.+.+ +|+++|+++|+++|+|++|......
T Consensus 148 ~~~~v~~~-------d~~~l~~ai~---~~t~~v~~e~p~NptG~~~dl~---~i~~la~~~g~~livD~a~~~~~~~-- 212 (430)
T 3ri6_A 148 EVRFVDVM-------DSLAVEHACD---ETTKLLFLETISNPQLQVADLE---ALSKVVHAKGIPLVVDTTMTPPYLL-- 212 (430)
T ss_dssp EEEEECTT-------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHH---HHHHHHHTTTCCEEEECTTSCTTTC--
T ss_pred EEEEeCCC-------CHHHHHHhhC---CCCeEEEEECCCCCCCeecCHH---HHHHHHHHcCCEEEEECCCcccccC--
Confidence 99998762 8999999987 5789999999999999999855 7777799999999999998754432
Q ss_pred CCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEE
Q 012238 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318 (467)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (467)
... .. ...+++.|+||.++.+|..+|.+++
T Consensus 213 --~~~------~~-g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 213 --EAK------RL-GVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp --CGG------GG-TCSEEEEECCCEEETTEEECCEEEE
T ss_pred --ChH------Hc-CCEEEEECCcccccCCCCceEEEEE
Confidence 111 11 2358899999999988877888863
No 203
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.88 E-value=4.4e-21 Score=192.21 Aligned_cols=215 Identities=16% Similarity=0.116 Sum_probs=154.7
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-----hhCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-----NDAR 198 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-----~~~G 198 (467)
+.....+|++.++++... +++++ +++|++|+.++ +..+.+||+|+++.|+|......+ +..|
T Consensus 65 ~~p~~~~l~~~la~l~g~--------~~~~~--~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 131 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGG--------TRAFA--FASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG 131 (400)
T ss_dssp CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCC--------CCEEE--ecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence 455678899999998643 24555 67789999874 556779999999999998555543 3459
Q ss_pred CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCC
Q 012238 199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS 278 (467)
Q Consensus 199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~ 278 (467)
++++.++. .|++.+++.++ ++++++++++|+||||.+++ +++|+++|++||+++|+|++|.......
T Consensus 132 ~~~~~v~~-------~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~ 198 (400)
T 3nmy_A 132 LDFSFVDL-------TDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR 198 (400)
T ss_dssp CEEEEECT-------TSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC
T ss_pred eEEEEECC-------CCHHHHHHHhc---cCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 99888876 28899999987 57889999999999999997 6678888999999999999986433211
Q ss_pred CCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce-EEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHH
Q 012238 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA-MNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGA 357 (467)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~-~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (467)
+. .. ..++++.|+||.++.+|.++|+ ++ ++.++++++. +...........+...+
T Consensus 199 ------~~----~~-g~div~~S~sK~l~g~g~~~gG~~v-v~~~~~~~~~------------l~~~~~~~g~~~~~~~a 254 (400)
T 3nmy_A 199 ------PL----SL-GADLVVHSATKYLNGHSDMVGGIAV-VGDNAELAEQ------------MAFLQNSIGGVQGPFDS 254 (400)
T ss_dssp ------GG----GG-TCSEEEEETTTTTTCSSSCCCEEEE-ECSCHHHHHH------------HHHHHHHHCCBCCHHHH
T ss_pred ------hh----hc-CCcEEEecCccccCCCCCcceeEEE-EeCCHHHHHH------------HHHHHHhcCCCCCHHHH
Confidence 11 11 3468899999999989999988 43 4678887776 44333333344555555
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 012238 358 RIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD 399 (467)
Q Consensus 358 ~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~ 399 (467)
.++...++. +....++..++...+.+.|+ +.
T Consensus 255 ~~~l~~l~~----------l~~r~~~~~~~a~~l~~~L~-~~ 285 (400)
T 3nmy_A 255 FLALRGLKT----------LPLRMRAHCENALALAQWLE-TH 285 (400)
T ss_dssp HHHHHHHTT----------HHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhHhH----------HHHHHHHHHHHHHHHHHHHH-cC
Confidence 555444432 33445566677777888887 54
No 204
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.88 E-value=1.4e-21 Score=194.71 Aligned_cols=300 Identities=11% Similarity=0.072 Sum_probs=191.3
Q ss_pred hHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHHhhCCC--CeEE
Q 012238 128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDARV--PWSE 203 (467)
Q Consensus 128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~--~~~~~~G~--~~~~ 203 (467)
..++++.+++++.. .+.+++ |+|||++++++ +..+.+||+|++++++|..+. ..++..|. +++.
T Consensus 37 ~~~~~~~l~~~~~~-------~~~v~~--~~sgt~a~~~~---~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~ 104 (379)
T 3ke3_A 37 MNDLLSNLKTVYNA-------EAAVII--PGSGTYGMEAV---ARQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTV 104 (379)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEE--ESCHHHHHHHH---HHHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHHHHhCC-------CCEEEE--cCChhHHHHHH---HHhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEE
Confidence 34567777777533 246777 89999999997 345679999999999997643 45555664 6677
Q ss_pred eeeecC------CC-CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 204 YRYYDP------KT-VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 204 v~~~~~------~~-~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
++.+.. .. ..+|++.+++.+++ .+++++++++++||||.+++.+++++|.++|++||+++|+|+++. .
T Consensus 105 ~~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g- 179 (379)
T 3ke3_A 105 LTAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS--G- 179 (379)
T ss_dssp EECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC--T-
T ss_pred EeccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc--C-
Confidence 766321 01 25899999999963 255678888999999999999999999999999999999999964 2
Q ss_pred CCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhh----hhH---HHHHH---HHHhhcc
Q 012238 277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCE----VAV---IQVKS---QLKRLAR 346 (467)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~----~~~---~~~~~---~l~~~~~ 346 (467)
....+.. .. .-.+++.|++|.++.+ .++|+++ .++++++.-.. +.+ ..... ......+
T Consensus 180 -~~~~~~~------~~-~~d~~~~s~~K~l~~~-~g~g~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 247 (379)
T 3ke3_A 180 -CVWLDMK------EL-GIDVLISAPQKGWSST-PCAGLVM---LSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGH 247 (379)
T ss_dssp -TCCCCHH------HH-TCSEEEECTTTTTCSC-CCEEEEE---ECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSC
T ss_pred -Ccccccc------cc-CCCEEEecchhhcCCC-CceEEEE---ECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCC
Confidence 1112211 11 2357789999988633 4478885 66777665000 000 00000 0000011
Q ss_pred CccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCC---cc-eEEecCCCH
Q 012238 347 PMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQ---IG-MFSFTGLNK 422 (467)
Q Consensus 347 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~---~g-~f~~~~l~~ 422 (467)
.+...++...+.++..+|.. + . +..++++.++++++++++.+.|+ ++|+ ++..+. .+ ...+..-+.
T Consensus 248 ~~~~t~~~~~~~a~~aal~~--~-~--~~g~~~~~~~~~~l~~~l~~~l~-~~g~----~~~~~~~~~~~~i~~~~~~~~ 317 (379)
T 3ke3_A 248 AYHATMPTDSLRQFRDAILE--A-K--EIGFDILRDAQWELGNRVRKVLT-DKGI----ESVAAEGFEAPGVVVSYTERD 317 (379)
T ss_dssp CCSSCCCHHHHHHHHHHHHH--H-H--HHCHHHHHHHHHHHHHHHHHHHH-HTTC----CBSBCTTCBCSSEEEEECSCH
T ss_pred CCCCCCCHHHHHHHHHHHHH--H-H--HhcHHHHHHHHHHHHHHHHHHHH-HcCC----EecCCccccCceEEEEccCCc
Confidence 11124455454444444421 1 1 12257888889999999999999 8774 444332 22 122222123
Q ss_pred HH-HHHHHHcccEEEeCC----------C---eEEecc-CChhhHHHHHHHHHHHHHhc
Q 012238 423 AQ-SDNMTNKWHVYMTKD----------G---RISLAG-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 423 ~~-~~~ll~~~gI~v~~g----------g---Ris~~~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
+. ..+.|+++||.+.+| + ||++.. .+++++++++++|+++++++
T Consensus 318 ~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 318 DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 33 134455579988765 3 888753 37799999999999998764
No 205
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.88 E-value=2.6e-21 Score=199.16 Aligned_cols=328 Identities=10% Similarity=-0.004 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccc-------cCceeeeecCCchhHHHHHHHHHHH-h
Q 012238 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIER-Y 174 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~al~l~~~~l~~-~ 174 (467)
+..+.+++...++.+. ..|....+..++++.+++++....|.+.+ ...+++ |.|||+|+.++...... .
T Consensus 87 ~~~~~~~~~~~~n~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~al~~~~~~~ 163 (486)
T 1js3_A 87 PAMLADMLCGAIGCIG-FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAARTKV 163 (486)
T ss_dssp HHHHHHHHHHHHCCCC-SSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCc-cccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHHHHHHHHHH
Confidence 5667888888776543 66777777889998888887665554421 245677 89999999887322211 1
Q ss_pred CC------CC----------EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC---CCcEEEEe
Q 012238 175 FP------GA----------KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLH 235 (467)
Q Consensus 175 ~~------gd----------~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~i 235 (467)
.+ || .|+++.++|..+...++..|++++.+|++ +++.+|++.|++.+++.. ..+.++++
T Consensus 164 ~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~ 241 (486)
T 1js3_A 164 VRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVA 241 (486)
T ss_dssp HHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEE
Confidence 11 42 38889999999999999999999999983 578899999999997421 12358888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccce
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA 315 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~ 315 (467)
++|+||||.+- ++++|+++|++||+++++|++|.++.....+... .+.. .. +-+ .++.|++|.++.| +++||
T Consensus 242 ~~~~n~tG~~~---~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~-~~~g-~~-~ad-si~~~~hK~~~~p-~~~G~ 313 (486)
T 1js3_A 242 TLGTTSCCSFD---NLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNG-VE-FAD-SFNFNPHKWLLVN-FDCSA 313 (486)
T ss_dssp EBSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGG-GGTT-GG-GCS-EEEECHHHHSSCC-SSCEE
T ss_pred eCCCCCCCCCC---CHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHH-HhcC-cc-ccC-eeEEchhhhcCCC-cceEE
Confidence 99999999874 4668888899999999999999876532111111 0000 11 123 4457889999866 89999
Q ss_pred EEEecCCHHH-HhhhhhhhHHHHH---HHHHhhcc-------------CccCCCchHHHHHHHHHhCChhhHHHHHHHHH
Q 012238 316 MNVVCSSSDL-AARCCEVAVIQVK---SQLKRLAR-------------PMYSNPPVHGARIVANVVGNPALFDEWKAEME 378 (467)
Q Consensus 316 ~~~v~~~~~~-~~~~~~~~~~~~~---~~l~~~~~-------------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~ 378 (467)
++ +.+++. .+. +. ..+..... ........+.+.++...+. .+.++
T Consensus 314 l~--~~~~~~l~~~--------~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g--------~~g~~ 375 (486)
T 1js3_A 314 MW--VKRRTDLTGA--------FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG--------VKGLQ 375 (486)
T ss_dssp EE--ESCHHHHHGG--------GC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH--------HHHHH
T ss_pred EE--EeCHHHHHHH--------hcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh--------HHHHH
Confidence 96 566654 333 10 00100000 0000122344444433321 23366
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCcccc-cCCcceEEec--CC---CHHHHHHHHHcccEE-EeCC---C----eEEe
Q 012238 379 MMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT--GL---NKAQSDNMTNKWHVY-MTKD---G----RISL 444 (467)
Q Consensus 379 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~~--~l---~~~~~~~ll~~~gI~-v~~g---g----Ris~ 444 (467)
++.+++.++++++.+.|+ +.+ ++++. ++..+++.|. +. +.++.+++.++ |+. +.++ | |+++
T Consensus 376 ~~~~~~~~~a~~l~~~L~-~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~ 450 (486)
T 1js3_A 376 AYIRKHVQLSHEFEAFVL-QDP---RFEVCAEVTLGLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRLRGQFVLRFAI 450 (486)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCT---TEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHh-cCC---CeEEeCCCceeEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEe
Confidence 778888889999999998 752 15554 3566666553 22 23445666655 643 3332 2 9998
Q ss_pred ccC--ChhhHHHHHHHHHHHHHhc
Q 012238 445 AGL--SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 445 ~~~--~~~~i~~~~~~l~~~l~~~ 466 (467)
+.. +++++++++++|+++++++
T Consensus 451 ~~~~~t~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 451 CSRKVESGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 642 6789999999999987653
No 206
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.88 E-value=1.1e-20 Score=195.09 Aligned_cols=356 Identities=11% Similarity=0.022 Sum_probs=222.8
Q ss_pred ccchHHHhhcCCCCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc
Q 012238 70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE 149 (467)
Q Consensus 70 i~~~~~~~~~~~~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~ 149 (467)
..++.+.+...--+..++++.-.|++....++.++.+.+++.....+.....|....+..++.+.+.+++....|.+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~ 158 (497)
T 2qma_A 80 LKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EK 158 (497)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CC
Confidence 33444444432234556666666666656666678887776554422223456555566677666555544433332 13
Q ss_pred CceeeeecCCchhHHHHHHHHHH--Hh---------CC------CC-EEEEcCCCCcchHHHHhhCCC---CeEEeeeec
Q 012238 150 QRVATVQGLSGTGSLRLAAALIE--RY---------FP------GA-KVLISSPTWGNHKNIFNDARV---PWSEYRYYD 208 (467)
Q Consensus 150 ~~i~~~~t~ggt~al~l~~~~l~--~~---------~~------gd-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~ 208 (467)
+.+++ |+||++|+.++..... .+ .+ |+ .|+++.++|..+...++..|. +++.+|++
T Consensus 159 ~~~~~--t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~- 235 (497)
T 2qma_A 159 ADGIF--TSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN- 235 (497)
T ss_dssp CEEEE--ESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-
T ss_pred CCeEE--cCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC-
Confidence 67888 9999999998744321 11 12 46 899999999999998888876 78889883
Q ss_pred CCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhH
Q 012238 209 PKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS 285 (467)
Q Consensus 209 ~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~ 285 (467)
+++.+|++.|++.+++. ..++.+++++.++||||...+ +++|+++|++||+++++|++|.++.... + ..
T Consensus 236 -~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~-~~ 307 (497)
T 2qma_A 236 -ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILS---S-HK 307 (497)
T ss_dssp -TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGS---T-TG
T ss_pred -CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhC---c-ch
Confidence 46789999999999742 112447888899999999766 5577778999999999999998776431 1 10
Q ss_pred HHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCcc----------------
Q 012238 286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMY---------------- 349 (467)
Q Consensus 286 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------- 349 (467)
. .+.......+++.|++|.++.| .++|+++ +.++..++. +........
T Consensus 308 ~-~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~--~~~~~~~~~------------~~~~~~yl~~~~~~~~~~~~~~~~~ 371 (497)
T 2qma_A 308 S-RLKGVERAHSISVDFHKLFYQT-ISCGALL--VNDKSNFKF------------LLHHADYLNREHDELPNLVDKSIAT 371 (497)
T ss_dssp G-GGTTGGGCSEEEEETTTTTCCC-SSCEEEE--ESCGGGGGG------------GCC--------------------CC
T ss_pred H-hhcCcccCCEEEEcchhccCCC-cceEEEE--EeCHHHHHH------------hcCCchhcCCccccCCCccccCCCC
Confidence 0 0101112236678999988866 6999996 466654443 110000000
Q ss_pred -CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc-cCCcceEEec--CC--C--
Q 012238 350 -SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFI-LRQIGMFSFT--GL--N-- 421 (467)
Q Consensus 350 -~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~-~~~~g~f~~~--~l--~-- 421 (467)
.....+.+.++...+. .+.++++.+++.++++++.+.|+ ++. .+++. ++..+++.|. +. .
T Consensus 372 ~r~~~al~~~~~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~-~~~---~~~~~~~~~~~~v~f~~~~~~~~~~ 439 (497)
T 2qma_A 372 TKRFDALKVFMTMQNVG--------PKALGDMYDHLLAQTLEVADMIR-TND---QFELLAEPSLSTVLFRATHETADLD 439 (497)
T ss_dssp SCCCTHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHHHHHH-TCT---TEEECSCCSSSEEEEEECCSSSCHH
T ss_pred CCchhHHHHHHHHHHhC--------HHHHHHHHHHHHHHHHHHHHHHh-hCC---CeEEEcCCCceEEEEEEcCCccCHH
Confidence 0011223333333332 12356777888889999999998 652 15553 4566655443 11 1
Q ss_pred ---HHHHHHHHHcccEEEeCC----C----eEEec--cCChhhHHHHHHHHHHHHHhc
Q 012238 422 ---KAQSDNMTNKWHVYMTKD----G----RISLA--GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 422 ---~~~~~~ll~~~gI~v~~g----g----Ris~~--~~~~~~i~~~~~~l~~~l~~~ 466 (467)
.++.+.+.+ .|+.+.++ | ||+++ ..+++++++++++|+++++++
T Consensus 440 ~l~~~l~~~l~~-~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 440 ELNKALRLEALT-RGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHH-HTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-CCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 123344554 48877542 3 99884 237899999999999998875
No 207
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.87 E-value=4.1e-20 Score=185.93 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=127.9
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV 199 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~ 199 (467)
+.....++++.+|+++.. +++++ +.||++|++++ +...+.+||+|+++.|.|......+ +..|+
T Consensus 80 ~~p~~~~le~~lA~l~g~--------~~~i~--~ssGt~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~ 147 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV 147 (415)
T ss_dssp CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred CCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 455678899999999643 24555 68999999987 4445679999999999998776544 46788
Q ss_pred CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCC
Q 012238 200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASG 277 (467)
Q Consensus 200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~ 277 (467)
+++.++. .|++.++++++ +++++|++++|+||||.+++. ++|+++|++ +|+++|+|++|......
T Consensus 148 ~v~~v~~-------~d~~~le~ai~---~~tklV~~e~~~NptG~v~dl---~~I~~la~~~~~g~~livD~a~a~~~~~ 214 (415)
T 2fq6_A 148 TTSWFDP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHDV---PAIVAAVRSVVPDAIIMIDNTWAAGVLF 214 (415)
T ss_dssp EEEEECT-------TCGGGGGGGCC---TTEEEEEEESSCTTTCCCCCH---HHHHHHHHHHCTTCEEEEECTTTTTTSS
T ss_pred EEEEECC-------CCHHHHHHhhc---cCCcEEEEECCCCCCCEeecH---HHHHHHHHhhcCCCEEEEECCCcccccC
Confidence 8888765 28899988887 578999999999999999985 577777999 99999999998754322
Q ss_pred CCCCChhHHHHHHhcCCeEEEEecCccCcccCCCcc-ceEEEecCCHHHHhh
Q 012238 278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAAR 328 (467)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~v~~~~~~~~~ 328 (467)
. ++ .. ..++++.|+||.++.+|.++ ||++ .++++++.
T Consensus 215 ----~--p~----~~-g~Div~~S~sK~lg~~g~~~~G~l~---~~~~~~~~ 252 (415)
T 2fq6_A 215 ----K--AL----DF-GIDVSIQAATKYLVGHSDAMIGTAV---CNARCWEQ 252 (415)
T ss_dssp ----C--GG----GG-TCSEEEEETTTTTTCSSSCCCEEEE---ECTTTHHH
T ss_pred ----C--cc----cc-CCeEEEEeCccccCCCCCceEEEEE---eCHHHHHH
Confidence 1 11 11 24688999999999998765 7774 45556665
No 208
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.87 E-value=1.6e-20 Score=191.69 Aligned_cols=324 Identities=15% Similarity=0.159 Sum_probs=190.9
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCC---cc---hHHHH----HHHHHHHhCCCCcccccCce-
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EG---LAAFN----KVTAELLFGADNSVLKEQRV- 152 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~---~G---~~~lr----~aia~~l~~~~~~~~~~~~i- 152 (467)
+.|+|..+.. + +++.|++++...+.+.+..+|+.. .| ..+++ +.++++++.. .+++
T Consensus 55 ~~i~lias~n------~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~------~~~~~ 121 (490)
T 2a7v_A 55 RGLELIASEN------F-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD------PAQWG 121 (490)
T ss_dssp HSEECCTTCC------C-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC------TTTEE
T ss_pred cCceEECCCC------C-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCC------cccCc
Confidence 5688886543 2 489999999887754433344321 12 23555 6677775433 3222
Q ss_pred eeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--------HHhhCCCCeE--EeeeecCCCCCCChhhHHHH
Q 012238 153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN--------IFNDARVPWS--EYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 153 ~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~--------~~~~~G~~~~--~v~~~~~~~~~~d~~~l~~~ 222 (467)
+.+++.+|++|+.++ +.+.+.|||+|++++|.|..+.. .+...|..+. .++++ ++++.+|++.+++.
T Consensus 122 ~~v~~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd-~~~~~iD~d~le~~ 198 (490)
T 2a7v_A 122 VNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALT 198 (490)
T ss_dssp EECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCBC-TTTCSBCHHHHHHH
T ss_pred eEEeCCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccc-cccCCcCHHHHHHH
Confidence 223367899999987 66678899999999998865421 2345565443 44443 34678999999999
Q ss_pred HHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238 223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQS 301 (467)
Q Consensus 223 l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (467)
++. .++++++++.++||+. .+ +++|.++|++||+++++|+++. ++...+. ...++ . .-.+++.|
T Consensus 199 l~~--~~~klIi~~~s~~~~~--~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~--~~~~~----~--~aDiv~~S 263 (490)
T 2a7v_A 199 ARL--FRPRLIIAGTSAYARL--ID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPF----K--HADIVTTT 263 (490)
T ss_dssp HHH--HCCSEEEECCSSCCSC--CC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCGG----G--TCSEEEEE
T ss_pred Hhh--cCCcEEEEcCCCCCCc--cc---HHHHHHHHHHcCCEEEEccccccccccCCc--CCCCC----C--CCCEEEEC
Confidence 874 2456788888999863 33 6788888999999999999943 3332211 11111 1 12478899
Q ss_pred CccCcccCCCccceEEEecCCH--------------HHHhhhhhhhHHHHHHHHHhhccCcc-CCCchHHHHHHHHHhCC
Q 012238 302 YSKNLGLYAERIGAMNVVCSSS--------------DLAARCCEVAVIQVKSQLKRLARPMY-SNPPVHGARIVANVVGN 366 (467)
Q Consensus 302 ~SK~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~ 366 (467)
+||++ .|.|.|+++ +.+. ++.+. ++....+.. .+++.....+...++.
T Consensus 264 ~hK~l--~Gp~GG~i~--~~~~~~~~~~~~~~~~~~~l~~~------------i~~~~~~g~qggp~~~~iaAla~Al~- 326 (490)
T 2a7v_A 264 THKTL--RGARSGLIF--YRKGVKAVDPKTGREIPYTFEDR------------INFAVFPSLQGGPHNHAIAAVAVALK- 326 (490)
T ss_dssp SSGGG--CSCSCEEEE--EECSEEEEETTTEEEEECCCHHH------------HHHHHTTTTCCSCCHHHHHHHHHHHH-
T ss_pred CcccC--ccccchhee--eccchhcccccccchhhHHHHHH------------HHHHhcccCCCCchHHHHHHHHHHHH-
Confidence 99987 467789885 3332 23333 444333322 2333333223222322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccC-CcceEEecC-----CCHHHHHHHHHcccEEEeC--
Q 012238 367 PALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILR-QIGMFSFTG-----LNKAQSDNMTNKWHVYMTK-- 438 (467)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~~-----l~~~~~~~ll~~~gI~v~~-- 438 (467)
+...++.++..+++.++++++.+.|. +.| +++..+ ....++|++ ++.+.+.+.|++.||.+..
T Consensus 327 ----~~~~~~~~~~~~~~~~na~~L~~~L~-~~G----~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~ 397 (490)
T 2a7v_A 327 ----QACTPMFREYSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNT 397 (490)
T ss_dssp ----HHHSHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEEC
T ss_pred ----HHhhhhHHHHHHHHHHHHHHHHHHHH-HcC----cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCc
Confidence 11112345677888899999999999 877 455442 234456653 3567777788888999873
Q ss_pred --C--------C-eEEec-----cCChhhHHHHHHHHHHHHH
Q 012238 439 --D--------G-RISLA-----GLSLAKCEYLADAIIDSYH 464 (467)
Q Consensus 439 --g--------g-Ris~~-----~~~~~~i~~~~~~l~~~l~ 464 (467)
+ | ||+.. ++++++++++++.|.++++
T Consensus 398 ~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 398 CPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 2 1 77542 2478999999999998875
No 209
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.79 E-value=6.5e-24 Score=215.61 Aligned_cols=330 Identities=15% Similarity=0.060 Sum_probs=206.6
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.|||..|.....-|. -+|.|.+++.+.+.......| +.....+|.+.+++++.+ .+.+++ +++|+
T Consensus 99 G~~yiD~~~~~~~~~lGh--~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~p~-------~~~v~~--~nSGs 166 (465)
T 2yky_A 99 GHAYVNFLGEYTAGLFGH--SHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRFPS-------IDLVRF--TNSGT 166 (465)
Confidence 347899988875222222 267788888887755433444 555566788888877521 457888 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC--CeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
+|+..+.++...+..+++|++.+++|..+..... ..|+ .++.+|. .|++.+++.+++.++++++|++
T Consensus 167 eA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~ 239 (465)
T 2yky_A 167 EANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILV 239 (465)
Confidence 9999984433223456899999999977654332 1233 2223332 4788898888753345667666
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccc
Q 012238 236 GCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314 (467)
Q Consensus 236 ~~p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG 314 (467)
...+|+||.+. +.+.+++|.++|++||+++|+||+|. +..+. ...... ... ..-+.+|||.+|. |+|+|
T Consensus 240 epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~----~~a~~~-~gv---~pDi~t~sK~lg~-G~piG 309 (465)
T 2yky_A 240 EPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG----GGAQEM-LGI---SADLTTLGKYIGG-GMSFG 309 (465)
Confidence 65566799654 68889999999999999999999999 64331 111111 111 1224489999995 99999
Q ss_pred eEEEecCCHHHHhhhhhhhHHHHHHHHHh-----hccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 012238 315 AMNVVCSSSDLAARCCEVAVIQVKSQLKR-----LARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQ 389 (467)
Q Consensus 315 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~ 389 (467)
|++ +++++++. +.. .....+.+.+.+++.++...|+.- ++ +...++++++.+
T Consensus 310 ~v~---~~~~i~~~------------l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l------~~--~~~~~~~~~~~~ 366 (465)
T 2yky_A 310 AFG---GRRDLMER------------FDPARDGAFAHAGTFNNNILTMSAGHAALTQI------YT--RQAASDLSASGD 366 (465)
Confidence 985 77888776 433 112223355666666666555421 01 134455555566
Q ss_pred HHHHHhhhccCCCCCcccccCCcceEEecCCC------------------HHHHHHHHHcccEEEeCCC--eEEeccCCh
Q 012238 390 KLFDSLSAKDKSGKDWSFILRQIGMFSFTGLN------------------KAQSDNMTNKWHVYMTKDG--RISLAGLSL 449 (467)
Q Consensus 390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~l~------------------~~~~~~ll~~~gI~v~~gg--Ris~~~~~~ 449 (467)
++.+.|+ ++.-...+....+..|.++|+.+. ..+++.+++ +||++.|++ .+++.. ++
T Consensus 367 ~l~~~L~-~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~~~~~s~~~-t~ 443 (465)
T 2yky_A 367 RFRANLN-RIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRGMYALSLEI-AD 443 (465)
Confidence 6666655 431000011112334545554321 134556665 699999876 366654 88
Q ss_pred hhHHHHHHHHHHHHHhc
Q 012238 450 AKCEYLADAIIDSYHNV 466 (467)
Q Consensus 450 ~~i~~~~~~l~~~l~~~ 466 (467)
+++++++++|.++++++
T Consensus 444 edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 444 AGRDAFAEALADFIGEQ 460 (465)
Confidence 99999999999998764
No 210
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.87 E-value=4.7e-20 Score=184.71 Aligned_cols=244 Identities=14% Similarity=0.082 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHh------cCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC
Q 012238 104 DVVKKAENLMLE------RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177 (467)
Q Consensus 104 ~~v~~a~~~~~~------~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g 177 (467)
..|++++.+... ....+.| +..|..+|++.+|+++... ..+++.++.+|++|+.++ +...+.||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~~G 101 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGY-DDEGRDTLERVYATVFKTE-------AALVRPQIISGTHAISTV--LFGILRPD 101 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTSCSHHHHHHHH--HHHHCCTT
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCC-ChhHHHHHHHHHHHHhCCC-------cEEEECCCccHHHHHHHH--HHHhcCCC
Confidence 456666666431 1112345 4557899999999996532 233321268899999887 55667899
Q ss_pred CEEEEcC-CCCcchHH----------HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCCCC
Q 012238 178 AKVLISS-PTWGNHKN----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNPT 242 (467)
Q Consensus 178 d~Vlv~~-P~y~~~~~----------~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~----p~NPT 242 (467)
|+|+++. |.|..+.. .++..|++++.++.+ .++.+|++.++++++ ++++++++++ |+|||
T Consensus 102 D~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~--~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~npt 176 (409)
T 3jzl_A 102 DELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLL--ENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPS 176 (409)
T ss_dssp CEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCC--TTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCC
T ss_pred CEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCC--CCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCc
Confidence 9999998 99998875 346779999999884 357899999999987 5788999999 99999
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC-ccceEEEe
Q 012238 243 GIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVV 319 (467)
Q Consensus 243 G~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~v 319 (467)
|. ..++++|+++|++ +|+++++|++|..+.+.. ... .. ...++++|+||.++.+|. +.||++
T Consensus 177 g~---v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~---~p~------~~-g~Div~~S~sK~lgg~~~~~GG~v~-- 241 (409)
T 3jzl_A 177 FT---IEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQ---EPP------EV-GADIIAGSLIKNPGGGLAKTGGYIA-- 241 (409)
T ss_dssp CC---HHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSC---CSG------GG-TCSEEEEETTSGGGTTTCSSCEEEE--
T ss_pred Cc---cccHHHHHHHHHhhCCCCEEEEeCCcccccccC---Ccc------cc-CCeEEEECccccCCccCCceEEEEE--
Confidence 87 4678899999999 999999999998776431 111 11 235889999999997663 357774
Q ss_pred cCCHHHHhhhhhhhHHHHHHHHHhhccC--c--cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012238 320 CSSSDLAARCCEVAVIQVKSQLKRLARP--M--YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSL 395 (467)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l 395 (467)
+++++++. ++..... . ..++....+.++... .+.+..+.++..+++.++.+.|
T Consensus 242 -~~~~li~~------------l~~~~~~~~~g~~~g~~~~~~~~~l~g----------l~~~~~r~~~~~~~a~~la~~L 298 (409)
T 3jzl_A 242 -GKEALVDL------------CGYRLTTPGIGREAGASLYSLLEMYQG----------FFLAPHVTAQAIKGARFTAAML 298 (409)
T ss_dssp -ECHHHHHH------------HHHHHSCTTTGGGCCCCTTCHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eCHHHHHH------------HHHHhccccccccccccHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHH
Confidence 78888887 4432211 1 111211111222111 1224566777888899999999
Q ss_pred hhccCC
Q 012238 396 SAKDKS 401 (467)
Q Consensus 396 ~~~~g~ 401 (467)
+ ++|.
T Consensus 299 ~-~~g~ 303 (409)
T 3jzl_A 299 A-EFGV 303 (409)
T ss_dssp H-HTTC
T ss_pred H-hCCC
Confidence 9 8874
No 211
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.86 E-value=6.6e-20 Score=189.58 Aligned_cols=321 Identities=11% Similarity=0.033 Sum_probs=206.5
Q ss_pred HHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh------CCC---
Q 012238 107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------FPG--- 177 (467)
Q Consensus 107 ~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~------~~g--- 177 (467)
.+.+....+.+. ..|....+..++++.+.+++....|.+.+++++++ |.|||+|+.++....... .+|
T Consensus 110 ~~~l~~~~n~~~-~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~al~~~~~~~~~~~~~~G~~~ 186 (504)
T 2okj_A 110 GEWLTSTANTNM-FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKGMAA 186 (504)
T ss_dssp HHHHHHHHCCBS-SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGG
T ss_pred HHHHHHhhccCC-CchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHHHHHHHHHHhhHHhhcCccc
Confidence 345555544432 45665666666776665555443343323567888 999999999874333210 146
Q ss_pred --C-EEEEcCCCCcchHHHHhhCCC---CeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCH
Q 012238 178 --A-KVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTP 248 (467)
Q Consensus 178 --d-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~ 248 (467)
+ +|+++.++|..+...++..|. +++.+|++ +++.+|++.|++.+++. ..++++|++++|+||||.+.+
T Consensus 187 ~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~- 263 (504)
T 2okj_A 187 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP- 263 (504)
T ss_dssp SCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC-
T ss_pred cCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC-
Confidence 6 799999999999999998877 88889883 46889999999999741 125789999999999999876
Q ss_pred HHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238 249 EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR 328 (467)
Q Consensus 249 ~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~ 328 (467)
+++|+++|++||+++++|++|.++.....+.. ..+ .....-.+++.|++|.++.| .++|+++ +.++++++.
T Consensus 264 --l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~-~~~---~g~~~~D~i~~~~hK~~~~p-~~~g~l~--~~~~~~~~~ 334 (504)
T 2okj_A 264 --IQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HKL---NGIERANSVTWNPHKMMGVL-LQCSAIL--VKEKGILQG 334 (504)
T ss_dssp --HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GGG---TTGGGCSEEEECTTSTTCCC-SCCEEEE--ESSTTHHHH
T ss_pred --HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH-hhc---CCcccCCEEEECchhhcCCC-cceEEEE--EECHHHHHH
Confidence 45777789999999999999988765321110 111 10111236678899999865 6899996 455544432
Q ss_pred hhhhhHHHHHHHHHhhccCccC--------------------CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 012238 329 CCEVAVIQVKSQLKRLARPMYS--------------------NPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVR 388 (467)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r 388 (467)
. +......... ....+.+.++..++. .+.++++.++..+++
T Consensus 335 --------~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg--------~~g~~~~~~~~~~~a 395 (504)
T 2okj_A 335 --------C---NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELA 395 (504)
T ss_dssp --------H---HCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred --------H---hcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh--------HHHHHHHHHHHHHHH
Confidence 0 1111111100 012344444433332 233667788888999
Q ss_pred HHHHHHhhhccCCCCCccccc---CCcceEEecCC--------------------CHHHHHHHHHcccE-EEeC----C-
Q 012238 389 QKLFDSLSAKDKSGKDWSFIL---RQIGMFSFTGL--------------------NKAQSDNMTNKWHV-YMTK----D- 439 (467)
Q Consensus 389 ~~l~~~l~~~~g~~~~~~~~~---~~~g~f~~~~l--------------------~~~~~~~ll~~~gI-~v~~----g- 439 (467)
+++.+.|+ +.. ++++.. |..++++|... +.++.+.++++ |+ .+.+ +
T Consensus 396 ~~l~~~L~-~~~---~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~ 470 (504)
T 2okj_A 396 EYLYAKIK-NRE---EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDK 470 (504)
T ss_dssp HHHHHHHT-TCT---TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEETTE
T ss_pred HHHHHHHh-cCC---CEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEECCc
Confidence 99999998 652 156553 66677766321 12344566655 64 4431 2
Q ss_pred -C--eEEecc--CChhhHHHHHHHHHHHHHhc
Q 012238 440 -G--RISLAG--LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 -g--Ris~~~--~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||++++ .+++++++++++|+++++++
T Consensus 471 ~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 471 ANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp EEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 898862 27799999999999988764
No 212
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.86 E-value=5.2e-20 Score=190.37 Aligned_cols=324 Identities=11% Similarity=0.047 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHh--------
Q 012238 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-------- 174 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~-------- 174 (467)
+..+.+++...++.+. ..|....+..++++.+++|+....|...+++.+++ |.|||+|+..+.......
T Consensus 109 ~~~~~e~l~~~~~~~~-~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~ 185 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNM-FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTK 185 (511)
T ss_dssp HHHHHHHHHHHHCCCS-SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHhccCC-CCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHHHHHHHHHhhhhhhhc
Confidence 4455667777766543 77888889999999999988766666544567888 999999998873322111
Q ss_pred ----CCCCEEEEcCCCCcchHHHHhhCCC---CeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCC
Q 012238 175 ----FPGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGI 244 (467)
Q Consensus 175 ----~~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~ 244 (467)
.+++.|+++.++|..+...++..|+ +++.++.+ .++.+|++.|++.+++. ..+++++++++++||||.
T Consensus 186 G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~ 263 (511)
T 3vp6_A 186 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGA 263 (511)
T ss_dssp CGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCC
T ss_pred CcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcc
Confidence 1567999999999999999999998 88888883 46889999999999742 122788999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHH
Q 012238 245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD 324 (467)
Q Consensus 245 ~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~ 324 (467)
+-+ +++|+++|++||+++++|++|........+.. .. +.....-.+++.+++|.++.| ...|+++ +.+++
T Consensus 264 vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~-~~---~~g~~~aDsv~~~~hK~l~~p-~g~g~l~--~~~~~ 333 (511)
T 3vp6_A 264 FDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHR-HK---LNGIERANSVTWNPHKMMGVL-LQCSAIL--VKEKG 333 (511)
T ss_dssp BCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GG---GTTGGGCSEEEECTTSTTCCC-SCCEEEE--ESSTT
T ss_pred ccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhh-hh---ccCCccCCEEEECcccccCCC-cCeEEEE--EeCHH
Confidence 854 66888889999999999999987654211111 00 000111245667999998865 5678875 46665
Q ss_pred HHhhhhhhhHHHHHHHHHhhccCcc--------------------C-CCchHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 012238 325 LAARCCEVAVIQVKSQLKRLARPMY--------------------S-NPPVHGARIVANVVGNPALFDEWKAEMEMMAGR 383 (467)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~-~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~ 383 (467)
.... ......... + ....+...++...+. .+.++++.++
T Consensus 334 ~~~~------------~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g--------~~gl~~~~~~ 393 (511)
T 3vp6_A 334 ILQG------------CNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINK 393 (511)
T ss_dssp HHHH------------HHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHH------------HhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh--------HHHHHHHHHH
Confidence 5443 211100000 0 112333333332221 2346788888
Q ss_pred HHHHHHHHHHHhhhccCCCCCccccc---CCcceEEec----CC----------------CHHHHHHHHHcccEEEeC--
Q 012238 384 IKNVRQKLFDSLSAKDKSGKDWSFIL---RQIGMFSFT----GL----------------NKAQSDNMTNKWHVYMTK-- 438 (467)
Q Consensus 384 ~~~~r~~l~~~l~~~~g~~~~~~~~~---~~~g~f~~~----~l----------------~~~~~~~ll~~~gI~v~~-- 438 (467)
..++.+++.+.|+ +.. + +++.. +..+.++|. ++ +.++.++|+++ |+.+..
T Consensus 394 ~~~~a~~l~~~L~-~~p--g-~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~ 468 (511)
T 3vp6_A 394 CLELAEYLYAKIK-NRE--E-FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQ 468 (511)
T ss_dssp HHHHHHHHHHHHH-SCT--T-EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEE
T ss_pred HHHHHHHHHHHHh-cCC--C-EEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEE
Confidence 8899999999998 652 1 56554 555555542 11 11345566665 643322
Q ss_pred ---CC----eEEecc--CChhhHHHHHHHHHHHHHhc
Q 012238 439 ---DG----RISLAG--LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 439 ---gg----Ris~~~--~~~~~i~~~~~~l~~~l~~~ 466 (467)
++ ||++++ .+.+++++++++|+++-+++
T Consensus 469 ~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 469 PQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp EETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 22 888743 36789999999999886653
No 213
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.86 E-value=9.2e-20 Score=184.12 Aligned_cols=163 Identities=20% Similarity=0.092 Sum_probs=125.9
Q ss_pred CcCCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH---
Q 012238 120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF--- 194 (467)
Q Consensus 120 ~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~--- 194 (467)
+.|.. .....++++++++++... +.++ +.+|++|+.++ +...+.+||+|+++.|+|..+...+
T Consensus 50 ~~y~~~~~~~~~~l~~~la~~~g~~-------~~v~---~~sGt~A~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~ 117 (421)
T 2ctz_A 50 NIYSRIMNPTVDVLEKRLAALEGGK-------AALA---TASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVT 117 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCS-------EEEE---ESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTH
T ss_pred CcccCCCChHHHHHHHHHHHHhCCC-------ceEE---ecCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHH
Confidence 44543 334689999999997542 2344 45669999997 3444679999999999998876655
Q ss_pred -hhCCCCeEEe-eeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC
Q 012238 195 -NDARVPWSEY-RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ 272 (467)
Q Consensus 195 -~~~G~~~~~v-~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~ 272 (467)
+..|++++.+ +. .|++.+++.++ ++++++++++|+||||.+++ +++|+++|+++|+++|+|++|.
T Consensus 118 ~~~~g~~~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~ 184 (421)
T 2ctz_A 118 LKRLGIEVRFTSRE-------ERPEEFLALTD---EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp HHHTTCEEEECCTT-------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred HHHcCCEEEEECCC-------CCHHHHHHhhc---cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcc
Confidence 7789998888 65 28899999887 57889999999999999999 5678888999999999999983
Q ss_pred CCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEE
Q 012238 273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN 317 (467)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (467)
.+.+.. ... .. ...+++.|++|.++.+|.|+|+++
T Consensus 185 ~~g~~~---~~~------~~-~~Di~~~s~~K~l~~~g~~~G~~~ 219 (421)
T 2ctz_A 185 MGGYLL---RPL------AW-GAALVTHSLTKWVGGHGAVIAGAI 219 (421)
T ss_dssp GGGTSC---CGG------GG-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred cccccC---Ccc------cc-CCeEEEECCcccccCCCCcEEEEE
Confidence 333321 111 11 245889999999999999999997
No 214
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.86 E-value=1.5e-19 Score=181.77 Aligned_cols=246 Identities=14% Similarity=0.083 Sum_probs=170.2
Q ss_pred HHHHHHHHHHH------hcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCC
Q 012238 104 DVVKKAENLML------ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177 (467)
Q Consensus 104 ~~v~~a~~~~~------~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~g 177 (467)
+.|++++.+.. .....+.| +..|..+|++.+|+++... ..++..|+.+|++|+.++ +...+.||
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~pG 115 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGY-GDIGRDSLDAVYARVFNTE-------SALVRPHFVNGTHALGAA--LFGNLRPG 115 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHHCCTT
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCC-CHHHHHHHHHHHHHHhCCc-------ceEEeCCCccHHHHHHHH--HHHHhCCC
Confidence 55777776542 11111334 4567899999999997543 224421258889999887 55668899
Q ss_pred CEEEEcC-CCCcchHH-----------HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCCC
Q 012238 178 AKVLISS-PTWGNHKN-----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNP 241 (467)
Q Consensus 178 d~Vlv~~-P~y~~~~~-----------~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~----p~NP 241 (467)
|+|++++ |.|..+.. .++..|++++.++.+ +++.+|++.+++.+++. ++++++++++ |+||
T Consensus 116 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~--~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~np 192 (427)
T 3i16_A 116 NTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLK--EDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRR 192 (427)
T ss_dssp CEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCC--TTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSC
T ss_pred CEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCc--cCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCC
Confidence 9999999 99998874 345679999998874 34679999999999742 3678888888 8999
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEE
Q 012238 242 TGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNV 318 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~ 318 (467)
||. ..++++|+++|++ +|+++++|++|..+.+.. ... .. ...++++|+||++|.+| .+.||++
T Consensus 193 tg~---i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~---~p~------~~-gaDiv~~S~sK~lgg~g~~~gG~i~- 258 (427)
T 3i16_A 193 ALL---IEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK---EPT------DV-GADLIAGSLIKNIGGGIAPTGGYLA- 258 (427)
T ss_dssp CCC---HHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSS---CGG------GG-TCSEEEEETTSGGGTTTCCSCEEEE-
T ss_pred ccc---HHHHHHHHHHHHHhCCCCEEEEECCCccccccC---Ccc------cc-CCeEEEecCcccCCCCCCceEEEEE-
Confidence 986 5788899999999 999999999998776431 111 11 23588999999998766 5668884
Q ss_pred ecCCHHHHhhhhhhhHHHHHHHHHhhc--cCccC-CCchHH-HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 319 VCSSSDLAARCCEVAVIQVKSQLKRLA--RPMYS-NPPVHG-ARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDS 394 (467)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~-~~~~~~-~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~ 394 (467)
+++++++. ++... ..... ..+.+. ...+... .+.+..+.++..+++.++.+.
T Consensus 259 --~~~~li~~------------l~~~~~~~~~g~~~~~~~~~a~~~l~g----------l~~~~~r~~~~~~~a~~la~~ 314 (427)
T 3i16_A 259 --GTKDCIEK------------TSYRLTVPGIGGECGSTFGVVRSMYQG----------LFLAPHISMEALKGAILCSRI 314 (427)
T ss_dssp --ECHHHHHH------------HHHHHSCTTTGGGCCCCTTCHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred --ECHHHHHH------------HHHhcccCccCccCCccHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 78888887 44321 11111 111111 1222111 122456778888889999999
Q ss_pred hhhccCC
Q 012238 395 LSAKDKS 401 (467)
Q Consensus 395 l~~~~g~ 401 (467)
|+ ++|.
T Consensus 315 L~-~~g~ 320 (427)
T 3i16_A 315 ME-LAGF 320 (427)
T ss_dssp HH-HTTC
T ss_pred HH-hCCC
Confidence 99 8873
No 215
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.86 E-value=5.8e-21 Score=194.26 Aligned_cols=285 Identities=11% Similarity=0.040 Sum_probs=172.3
Q ss_pred cCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC
Q 012238 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP 200 (467)
Q Consensus 121 ~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~ 200 (467)
-|.+.....++++.+++ +.. .+++++ |+|+++++.++ +...+.+||+|+++.|+|..+...+...|++
T Consensus 52 ~~~~~~~~~~~~~~la~-~g~-------~~~v~~--~~G~t~a~~~~--~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~ 119 (446)
T 2x3l_A 52 LHHPEEVILKSMKQVEK-HSD-------YDGYFL--VNGTTSGILSV--IQSFSQKKGDILMARNVHKSVLHALDISQQE 119 (446)
T ss_dssp TTSCSSHHHHHHHHHCS-CTT-------EEEEEE--SSHHHHHHHHH--HHTTTTSSSCEEECTTCCHHHHHHHHHHTCC
T ss_pred ccCcchHHHHHHHHHHh-cCC-------CceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEecCccHHHHHHHHHcCCe
Confidence 34566677888888888 532 257878 99999999998 4445679999999999999999999999999
Q ss_pred eEEeeeecCCC----CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCC-CC
Q 012238 201 WSEYRYYDPKT----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FA 275 (467)
Q Consensus 201 ~~~v~~~~~~~----~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~-~~ 275 (467)
++.++...+++ +.+|++.+ +. ++++++++++ +|+||.+++. ++|+++|++||+++|+||+|.. +.
T Consensus 120 ~~~v~~~~~~~~~~~~~~d~~~l---~~---~~~~~v~~~~-~n~~G~~~~l---~~I~~l~~~~~~~livDea~~~~~~ 189 (446)
T 2x3l_A 120 GHFIETHQSPLTNHYNKVNLSRL---NN---DGHKLVVLTY-PNYYGETFNV---EEVIKSLHQLNIPVLIDEAHGAHFG 189 (446)
T ss_dssp EEECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCCH---HHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred EEEEeCeeccccCcCCCCCHHHH---cC---CCceEEEEEC-CCCCeEecCH---HHHHHHHHhcCCeEEEcchhhhhhc
Confidence 99998732222 45788877 22 4567777777 5669999985 5778889999999999999886 33
Q ss_pred CCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHh--hhhhhhHHHHHHHHHhhccCccCCCc
Q 012238 276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA--RCCEVAVIQVKSQLKRLARPMYSNPP 353 (467)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (467)
+++. ... ....+ ..+++.|+||.++ .+.++||++ .+++.++ . +....... ....++
T Consensus 190 f~~~---~~~---~~~~g-~Di~~~S~~K~l~-~~~g~g~l~---~~~~~i~~~~--------~~~~~~~~---~~~s~~ 247 (446)
T 2x3l_A 190 LQGF---PDS---TLNYQ-ADYVVQSFHKTLP-ALTMGSVLY---IHKNAPYREN--------IIEYLSYF---QTSSPS 247 (446)
T ss_dssp STTS---CCC---GGGGT-CSEEEECHHHHSS-SCTTCEEEE---EETTCTTHHH--------HHHHHHHH---SCSSCC
T ss_pred cCCC---CCC---hHHcC-CCEEEECCccccc-cccccEEEE---EcCCcCCHHH--------HHHHHHHH---cCCCch
Confidence 3321 111 11122 2388999999543 234479986 3333332 2 22211111 112233
Q ss_pred hHHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEecC---CCHHH-HHHH
Q 012238 354 VHGARIVANVVGNPALFDEWKAE-MEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFTG---LNKAQ-SDNM 428 (467)
Q Consensus 354 ~~~~~~~~~~L~~~~~~~~~~~~-l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~~---l~~~~-~~~l 428 (467)
.....++..++ .+. ... .++..++. ..+.+.++ +.+ +++..+..+.++|+. .+... .+.|
T Consensus 248 ~~~~aal~~a~---~~l---~~~g~~~~~~~~----~~l~~~l~-~~g----~~~~~~~~~~~l~i~~~~~~~~~l~~~L 312 (446)
T 2x3l_A 248 YLIMASLESAA---QFY---KTYDSTLFFAKR----AQLIECLE-NKG----FEMLQVDDPLKLLIKYEGFTGHDIQNWF 312 (446)
T ss_dssp HHHHHHHHHHH---HHH---HHCCCHHHHHHH----HHHHHHHH-HHT----CEEEECSSTTEEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHHHHH---HHH---HHhCHHHHHHHH----HHHHHHHH-HcC----CEECcCCCCeEEEEEeCCcCHHHHHHHH
Confidence 22222221111 110 000 01123333 33334444 323 345544444456653 45544 4455
Q ss_pred HHcccEEEe-CCC---eEEeccC-ChhhHHHHHHHHHHHHHhc
Q 012238 429 TNKWHVYMT-KDG---RISLAGL-SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 429 l~~~gI~v~-~gg---Ris~~~~-~~~~i~~~~~~l~~~l~~~ 466 (467)
.+ +||.+. +|. |++++.. +++++ +++++|+++++.+
T Consensus 313 ~~-~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 313 MN-AHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp HH-TTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred HH-CCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 55 599998 553 9998742 67889 9999999987653
No 216
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.85 E-value=8.5e-20 Score=184.30 Aligned_cols=228 Identities=17% Similarity=0.116 Sum_probs=159.4
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCCcchHHHH--------
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS-PTWGNHKNIF-------- 194 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~-P~y~~~~~~~-------- 194 (467)
+..+..++++.+++++... ....++++ .+|++|+.++ +...+.|||+|+++. |.|..+...+
T Consensus 63 ~~~~~~~l~~~la~~~g~~----~~~~~i~~---~sGt~Ai~~a--l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~ 133 (431)
T 3ht4_A 63 DDIGRDTLEKVYADVFGAE----AGLVRPQI---ISGTHAISTA--LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVG 133 (431)
T ss_dssp SCHHHHHHHHHHHHHTTCS----EECCBTTS---CSHHHHHHHH--HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSS
T ss_pred ChhhHHHHHHHHHHHhCCC----ccccccee---eCHHHHHHHH--HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccc
Confidence 3445677888888885432 11223334 4779999987 444577999999998 9999988655
Q ss_pred --hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHh--cCCeeEEec
Q 012238 195 --NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDV 269 (467)
Q Consensus 195 --~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~-~p~NPTG~~~~~~~l~~l~~~~~~--~~~~li~De 269 (467)
+..|++++.++.+ .++.+|++.+++.++ +++++|+++ +||||||...+.+++++|+++|++ +|+++|+|+
T Consensus 134 ~~~~~G~~~~~v~~~--~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDe 208 (431)
T 3ht4_A 134 SFKEYNIGYNAVPLT--EGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDN 208 (431)
T ss_dssp CSGGGTCEEEECCBC--TTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred hHHHcCCEEEEeCCC--CCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4479999999884 357899999999997 577788888 599999999999999999999999 999999999
Q ss_pred cCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCccc-CCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCc
Q 012238 270 AYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPM 348 (467)
Q Consensus 270 ay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (467)
+|..+.++. ... .. ...++++|+||++|. .+...||++ +++++++. ++......
T Consensus 209 a~~~~~~~~---~~~------~~-g~Di~~~S~sK~lgg~~~~~GG~v~---~~~~li~~------------l~~~~~~~ 263 (431)
T 3ht4_A 209 CYGEFIEEQ---EPC------HV-GADLMAGSLIKNPGGGIVKTGGYIV---GKEQYVEA------------CAYRLTSP 263 (431)
T ss_dssp TTCTTSSSC---CGG------GT-TCSEEEEETTSGGGTTTCSSCEEEE---ECHHHHHH------------HHHHHSCT
T ss_pred CChhhccCC---Ccc------cc-CCeEEEcCccccCCCCCCCceEEEE---ecHHHHHH------------HHHHhccC
Confidence 999887542 111 11 235889999999653 123338885 77888887 43322211
Q ss_pred ----cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 012238 349 ----YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS 401 (467)
Q Consensus 349 ----~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~ 401 (467)
..+++...+.++...+ +.+..+.++..++..++.+.|+ ++|.
T Consensus 264 ~~g~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~a~~l~~~L~-~~g~ 309 (431)
T 3ht4_A 264 GIGAEAGASLYSLQEMYQGF----------FLAPHVAGQALKGAIFTAAFLE-KLGM 309 (431)
T ss_dssp TTTTSCSCCCSCSHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HHTC
T ss_pred CcccccCccHHHHHHHHhHh----------hhHHHHHHHHHHHHHHHHHHHH-hCcC
Confidence 1112111112221111 2244566778888889999998 8874
No 217
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.85 E-value=2.9e-19 Score=179.66 Aligned_cols=246 Identities=13% Similarity=0.069 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHHhc------CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCC
Q 012238 103 LDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176 (467)
Q Consensus 103 ~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~ 176 (467)
.+.|.+++.+.... ...+.| +..|..+|++.+|+++... ..++..|+.+|++|+.++ +...+.|
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y-~~~g~~~Le~~lA~l~g~e-------~alv~p~~~sGt~A~~~a--l~all~p 115 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGY-NDIGRDSLDRVYANIFNTE-------SAFVRPHFVNGTHAIGAA--LFGNLRP 115 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHTCCT
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCC-CchhHHHHHHHHHHHhCCC-------ceEEeCCCCcHHHHHHHH--HHHhcCC
Confidence 36677777775311 112345 3457899999999996542 223311258899999887 5566789
Q ss_pred CCEEEEcC-CCCcchHH-----------HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC----CCC
Q 012238 177 GAKVLISS-PTWGNHKN-----------IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHN 240 (467)
Q Consensus 177 gd~Vlv~~-P~y~~~~~-----------~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~----p~N 240 (467)
||+|++++ |.|..+.. .++..|++++.++. +++.+|++.+++.+++. +++++|++++ |+|
T Consensus 116 GD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 116 NDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp TCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred CCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence 99999999 99988773 44667999998887 25679999999999742 3678888888 899
Q ss_pred CCCCCCCHHHHHHHHHHHHh--cCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEE
Q 012238 241 PTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMN 317 (467)
Q Consensus 241 PTG~~~~~~~l~~l~~~~~~--~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~ 317 (467)
|||. ..++++|+++|++ +|+++++|++|..+.+.. .+ . .. ...++++|+||+++.+| .+.||++
T Consensus 192 ptg~---v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~---~p--~----~~-gaDiv~~S~sK~lgg~g~~~GG~i~ 258 (427)
T 3hvy_A 192 KSLR---IAEIAEIIKSIREVNENVIVFVDNCYGEFVEEK---EP--T----DV-GADIIAGSLIKNIGGGIATTGGYIA 258 (427)
T ss_dssp CCCC---HHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSS---CG--G----GG-TCSEEEEETTSGGGTTTCCSCEEEE
T ss_pred cccc---HHHHHHHHHHHHHhCCCCEEEEECCccccccCC---CC--c----cc-CCeEEEECCcccccccccceEEEEE
Confidence 9986 5778899999999 899999999998776431 11 1 11 23588999999998665 4457764
Q ss_pred EecCCHHHHhhhhhhhHHHHHHHHHhhcc-Ccc---CCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012238 318 VVCSSSDLAARCCEVAVIQVKSQLKRLAR-PMY---SNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFD 393 (467)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~---~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~ 393 (467)
+++++++. ++.... ... .+++...+.++...+ ..+..+.++..++..++.+
T Consensus 259 ---~~~~li~~------------l~~~~~~~~~g~~~~~~~~~a~~~~~gl----------~~~~~r~~~~~~~a~~la~ 313 (427)
T 3hvy_A 259 ---GKEEYVTQ------------ATFRVTVPGIGGECGSTFGVMRSLYEGL----------FMAPHVTIEAVKGAVFCAR 313 (427)
T ss_dssp ---ECHHHHHH------------HHHHHSCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred ---ECHHHHHH------------HHHHhhcCCcccccCCCHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHH
Confidence 78888887 443221 111 122111122222111 2244677778888899999
Q ss_pred HhhhccCC
Q 012238 394 SLSAKDKS 401 (467)
Q Consensus 394 ~l~~~~g~ 401 (467)
.|+ ++|.
T Consensus 314 ~L~-~~g~ 320 (427)
T 3hvy_A 314 IME-LAGF 320 (427)
T ss_dssp HHH-HTTC
T ss_pred HHH-hCCC
Confidence 999 8873
No 218
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.85 E-value=2.3e-20 Score=191.27 Aligned_cols=340 Identities=11% Similarity=0.001 Sum_probs=208.6
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhc---CCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (467)
+.+.|||..|.+-..-+. .+|.|.+++.+.+.. .....|.. ....++++++++.+....+. ..++|++ ++
T Consensus 62 G~~ylD~~~g~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~--~~~~v~f--~~ 134 (472)
T 1ohv_A 62 GNRMLDLYSQISSIPIGY--SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPK--GMSQLIT--MA 134 (472)
T ss_dssp SCEEEESSHHHHTCSSCB--TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCT--TCCEEEE--ES
T ss_pred CCEEEECCCCHhhcccCC--CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCC--CcCEEEE--eC
Confidence 457999999887332333 377888888776421 11123322 33568999999876543321 3568988 99
Q ss_pred CchhHHHHHHHHHHHh------C-----------------CC---CEEEEcCCCCcchHHHH-hhCCCCe----------
Q 012238 159 SGTGSLRLAAALIERY------F-----------------PG---AKVLISSPTWGNHKNIF-NDARVPW---------- 201 (467)
Q Consensus 159 ggt~al~l~~~~l~~~------~-----------------~g---d~Vlv~~P~y~~~~~~~-~~~G~~~---------- 201 (467)
||++|+..+.++.... . || ++|++.+++|..+.... ...|...
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~ 214 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 214 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence 9999999985544211 0 46 89999999998765543 3333211
Q ss_pred ---EEeeeec-C--CC--C-----CCChhhHHHHHHcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCCe
Q 012238 202 ---SEYRYYD-P--KT--V-----GLDFEGMIADIKAAP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHI 264 (467)
Q Consensus 202 ---~~v~~~~-~--~~--~-----~~d~~~l~~~l~~~~---~~~~~i~i~~p~NPTG~-~~~~~~l~~l~~~~~~~~~~ 264 (467)
+.+|.+. + .. + ..|++.|++.+++.. .++++|++...+|+||. .++.+.+++|.++|++||++
T Consensus 215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~l 294 (472)
T 1ohv_A 215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA 294 (472)
T ss_dssp CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCE
Confidence 1222100 0 00 0 126788888887421 16778888777889996 57899999999999999999
Q ss_pred eEEeccCCCCCCCCCCCChhHHHHHHhcC--CeEEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHH
Q 012238 265 PFFDVAYQGFASGSLDNDASSVRLFATRG--MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLK 342 (467)
Q Consensus 265 li~Deay~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 342 (467)
+|+||+|.++...+ ..+....+ ... .+ +.+|||.+ +.| ||+ . ++++. . +.
T Consensus 295 li~DEv~~g~g~~g---~~~~~~~~-gv~~~~D---i~t~sK~~-l~G---G~~---~-~~~~~-~------------~~ 346 (472)
T 1ohv_A 295 FLVDEVQTGGGSTG---KFWAHEHW-GLDDPAD---VMTFSKKM-MTG---GFF---H-KEEFR-P------------NA 346 (472)
T ss_dssp EEEECTTTTTTTTS---SSSGGGGG-CCSSCCS---EEEECGGG-SSE---EEE---E-CGGGS-C------------SS
T ss_pred EEEeCcccCCCCCC---Cchhcccc-CCCCCCC---EEEEcccc-ccC---Ccc---C-chhhc-c------------cc
Confidence 99999998766432 11111111 110 22 34899995 345 766 2 44432 1 22
Q ss_pred hhccCccCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCcccccCCcceEEecCC
Q 012238 343 RLARPMYSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKD--KSGKDWSFILRQIGMFSFTGL 420 (467)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~--g~~~~~~~~~~~~g~f~~~~l 420 (467)
......+.+.+.+++.++..+|+. + .+ +...++++++++++.+.|+ ++ +.|..+....+.+. |+++.+
T Consensus 347 ~~~~~~T~~~~~~~~aaa~aal~~--~----~~--~~~~~~~~~~~~~l~~~L~-~l~~~~~~~v~~~~~~g~-~~~~~~ 416 (472)
T 1ohv_A 347 PYRIFNTWLGDPSKNLLLAEVINI--I----KR--EDLLSNAAHAGKVLLTGLL-DLQARYPQFISRVRGRGT-FCSFDT 416 (472)
T ss_dssp SSSSCCSSSSCHHHHHHHHHHHHH--H----HH--TTHHHHHHHHHHHHHHHHH-HHHHHCTTTCEEEEEETT-EEEEEC
T ss_pred cccccCccCccHHHHHHHHHHHHH--H----Hh--CCHHHHHHHHHHHHHHHHH-HHHhhCCCcEEeecCCce-EEEEEe
Confidence 222223335566777766665531 1 11 2356677777888888777 54 22211222445555 444444
Q ss_pred C-----HHHHHHHHHcccEEEeCCC----eEEec-cCChhhHHHHHHHHHHHHHhcC
Q 012238 421 N-----KAQSDNMTNKWHVYMTKDG----RISLA-GLSLAKCEYLADAIIDSYHNVS 467 (467)
Q Consensus 421 ~-----~~~~~~ll~~~gI~v~~gg----Ris~~-~~~~~~i~~~~~~l~~~l~~~~ 467 (467)
. .++++.+++ +||.+.++| ||+++ ..+++++++++++|++++++++
T Consensus 417 ~~~~~~~~~~~~l~~-~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 472 (472)
T 1ohv_A 417 PDESIRNKLISIARN-KGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472 (472)
T ss_dssp SSHHHHHHHHHHHHH-TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC-
T ss_pred CChhHHHHHHHHHHH-CCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 2 245667776 699999874 88655 2378999999999999998763
No 219
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.84 E-value=4.6e-19 Score=179.94 Aligned_cols=321 Identities=13% Similarity=0.052 Sum_probs=187.4
Q ss_pred cEEecCcccCCCCCCCCchHHHHHHH--HHHHhcCCCCcCCC--Ccc----hHHHHHHHHHHHhCCCCcccccCceeeee
Q 012238 85 KLNLGVGAYRTEELQPYVLDVVKKAE--NLMLERGENKEYLP--IEG----LAAFNKVTAELLFGADNSVLKEQRVATVQ 156 (467)
Q Consensus 85 ~i~l~~G~~~d~~~~p~~~~~v~~a~--~~~~~~~~~~~Y~~--~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~ 156 (467)
...++.|.| +.+. |+.+.+++ ...... ...|.+ ..| ..++++.++++++.. ++++++
T Consensus 66 ~~~~~~g~~----~~~~-p~~v~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~la~~~g~~------~~~i~~-- 130 (438)
T 1wyu_A 66 KAFLGGGVR----SHHV-PPVVQALAARGEFLTA--YTPYQPEVSQGVLQATFEYQTMIAELAGLE------IANASM-- 130 (438)
T ss_dssp TCCCCSSCC----CCCC-CHHHHHHHTSHHHHHC--CSCCSGGGCHHHHHHHHHHHHHHHHHHTSS------EECSCB--
T ss_pred ccccCCCcc----CCcC-cHHHHHHHhcchhhhc--CCCCcchhhhhHHHHHHHHHHHHHHHhCCC------ccceEE--
Confidence 456777776 3332 56664444 222221 122321 334 457778888876432 567777
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEE
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI 232 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 232 (467)
+.|++.+.+.+...+ .+.+||+|+++.|+|+.+...+ +..|++++.++. + ++.+|++. ++ +++++
T Consensus 131 ~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~--~~~~d~~~----i~---~~t~~ 199 (438)
T 1wyu_A 131 YDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-E--GGRTPLPE----VG---EEVGA 199 (438)
T ss_dssp SSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-B--TTBCCCCC----CC---TTEEE
T ss_pred eCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-c--CCccCHHH----hC---CCeEE
Confidence 899994444431112 3468999999999999887655 458999999986 2 35677776 43 57889
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCc----cc
Q 012238 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL----GL 308 (467)
Q Consensus 233 i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~----~~ 308 (467)
+++++| ||||.+.+ +++|+++|+++|+++|+|..-+.+.. . .. + ...+.+ +++.| +|.| ++
T Consensus 200 v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~--~--~~-~----~~~g~D-~~~~s-~kk~~~~~~~ 264 (438)
T 1wyu_A 200 VVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGV--L--KP-P----GAYGAD-IAVGD-GQSLGLPMGF 264 (438)
T ss_dssp EEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGT--B--CC-H----HHHTCS-EEEEE-CTTTTCCCGG
T ss_pred EEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccC--c--CC-C----ccCCCC-EEEEC-CcccCCCccC
Confidence 999999 99999986 55777779999999996633111211 1 11 1 112334 44555 5544 46
Q ss_pred CCCccceEEEecCCHHHHhhhhhh--hHH--------------HHHHHHHhhccCccCCC---chHHHHHHHHHhCChhh
Q 012238 309 YAERIGAMNVVCSSSDLAARCCEV--AVI--------------QVKSQLKRLARPMYSNP---PVHGARIVANVVGNPAL 369 (467)
Q Consensus 309 ~G~RiG~~~~v~~~~~~~~~~~~~--~~~--------------~~~~~l~~~~~~~~~~~---~~~~~~~~~~~L~~~~~ 369 (467)
.|.|+||++ .++++++.-... +.. .-....+.. . ...+. ..+....+...+. .+
T Consensus 265 ~Gp~~G~l~---~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~-~-~t~~~~~~~~~~a~~aa~~l~--~~ 337 (438)
T 1wyu_A 265 GGPHFGFLA---TKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA-K-AKSNITTNAQLTALMGAMYLA--AL 337 (438)
T ss_dssp GCSCCEEEE---ECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG-G-SSCCCCSCCHHHHHHHHHHHH--HH
T ss_pred CCCCeeEEE---EcHHHHHhCCCceeccccccCCCcceeeeccccccccchh-c-ccCCccchHHHHHHHHHHHHH--Hh
Confidence 677999996 556665540000 000 000000111 1 11222 2222221111121 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCcccccCCcceEE--ec--CCCH-HHHHHHHHcccEEE--eCC--
Q 012238 370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKD-KSGKDWSFILRQIGMFS--FT--GLNK-AQSDNMTNKWHVYM--TKD-- 439 (467)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~-g~~~~~~~~~~~~g~f~--~~--~l~~-~~~~~ll~~~gI~v--~~g-- 439 (467)
. .+.++++.+++.++++++.+.|+ ++ | +++..+. .+|. .+ +.+. ++.++|.+ +||.+ .++
T Consensus 338 ~---~~g~~~~~~~~~~~~~~l~~~L~-~~~g----~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~-~gi~v~~~~~~~ 407 (438)
T 1wyu_A 338 G---PEGLREVALKSVEMAHKLHALLL-EVPG----VRPFTPK-PFFNEFALALPKDPEAVRRALAE-RGFHGATPVPRE 407 (438)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHT-TSTT----CEECSCS-SBCSEEEEECSSCHHHHHHHHHH-TTCCCCEECCTT
T ss_pred C---HHHHHHHHHHHHHHHHHHHHHHh-cCCC----eEECCCC-CeEEEEEEeCCCCHHHHHHHHHH-CCceeccccccc
Confidence 0 23367788889999999999999 76 5 4555443 3332 12 3344 44566665 59998 443
Q ss_pred ---C--eEEeccC-ChhhHHHHHHHHHHHH
Q 012238 440 ---G--RISLAGL-SLAKCEYLADAIIDSY 463 (467)
Q Consensus 440 ---g--Ris~~~~-~~~~i~~~~~~l~~~l 463 (467)
+ |||++.. +++++++++++|++++
T Consensus 408 ~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 408 YGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 2 9998732 6789999999998865
No 220
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.83 E-value=7.9e-19 Score=175.34 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=118.2
Q ss_pred CCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH------
Q 012238 100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER------ 173 (467)
Q Consensus 100 p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~------ 173 (467)
+.+++.+.+++.+.+... .|.+..+..++|+++++++... ++++ +.+|++++.++ +...
T Consensus 11 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~--------~~i~--~~sGt~a~~~a--l~~~~~~~~~ 75 (390)
T 3b8x_A 11 STWDDLEYKAIQSVLDSK---MFTMGEYVKQYETQFAKTFGSK--------YAVM--VSSGSTANLLM--IAALFFTKKP 75 (390)
T ss_dssp CCCCHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHHTCS--------EEEE--ESCHHHHHHHH--HHHTTSSSSC
T ss_pred CCCCHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHCCC--------cEEE--ECCHHHHHHHH--HHHHHhhhhc
Confidence 345788888888887652 3667789999999999997532 4555 68888999987 3433
Q ss_pred -hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 012238 174 -YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE 252 (467)
Q Consensus 174 -~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~ 252 (467)
+.+||+|+++.|+|..+...++..|++++.++.+ ++++.+|++.+++.++ ++++++++++ ++|... +++
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~~---~~g~~~---~~~ 145 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDID-INTLNIDIESLKEAVT---DSTKAILTVN---LLGNPN---NFD 145 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHCC---TTEEEEEEEC---GGGCCC---CHH
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC-ccccCcCHHHHHHHhC---cCCeEEEEEC---CccChh---hHH
Confidence 4589999999999999999999999999999985 3357899999999987 4677777753 455543 466
Q ss_pred HHHHHHHhcCCeeEEeccCCC
Q 012238 253 KIADVIQEKNHIPFFDVAYQG 273 (467)
Q Consensus 253 ~l~~~~~~~~~~li~Deay~~ 273 (467)
+|.++|+++|+++|+|++|..
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~ 166 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESM 166 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCT
T ss_pred HHHHHHHHcCCEEEEECcCcc
Confidence 788889999999999999874
No 221
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.8e-19 Score=181.91 Aligned_cols=325 Identities=8% Similarity=-0.061 Sum_probs=212.3
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc--------CceeeeecCCchhHHHHHHHHHHH-
Q 012238 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE--------QRVATVQGLSGTGSLRLAAALIER- 173 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~--------~~i~~~~t~ggt~al~l~~~~l~~- 173 (467)
+..+.+.+...++.+. ..|....+..++++.+++++....|.+... ...++ |.|||+++.++......
T Consensus 92 ~~~~~~~~~~~~n~~~-~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~al~~ar~~ 168 (481)
T 4e1o_A 92 PSLLGDMLADAINCLG-FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIALLAARKN 168 (481)
T ss_dssp HHHHHHHHHHHHCCCC-SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccc-CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHHHHHHHHH
Confidence 5566677777776553 678888899999999998887665543221 24566 89999999887332211
Q ss_pred ----------------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 174 ----------------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 174 ----------------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
..+++.|+++.++|..+...++..|.+++.+|+ ++++.+|++.|++++++. ...+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~vv 246 (481)
T 4e1o_A 169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVC 246 (481)
T ss_dssp HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 125789999999999999999999999999998 456889999999999752 12267788
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCcc
Q 012238 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERI 313 (467)
Q Consensus 235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~Ri 313 (467)
.+.++|+||.+-+ +++|+++|++||+++++|++|........ . .+..... ..-..+..+++|.++.| .-.
T Consensus 247 ~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~---~--~~~~~~gi~~aDsi~~~~hK~l~~p-~g~ 317 (481)
T 4e1o_A 247 ATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCP---E--FRGFLKGIEYADSFTFNPSKWMMVH-FDC 317 (481)
T ss_dssp EEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSG---G--GGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhCh---h--hHHHhcCcccCCEEEEChHHhcCCC-Cce
Confidence 8899999998755 56788889999999999999877543211 0 1111111 11235567999988866 446
Q ss_pred ceEEEecCCHHHHhhhhhhhHHHHHHHHHh---hccC---------------ccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238 314 GAMNVVCSSSDLAARCCEVAVIQVKSQLKR---LARP---------------MYSNPPVHGARIVANVVGNPALFDEWKA 375 (467)
Q Consensus 314 G~~~~v~~~~~~~~~~~~~~~~~~~~~l~~---~~~~---------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 375 (467)
|+++ +.+++.... . +.. +... .......+.+.++...+. .+
T Consensus 318 g~l~--~~~~~~l~~--------~---~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--------~~ 376 (481)
T 4e1o_A 318 TGFW--VKDKYKLQQ--------T---FSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--------VK 376 (481)
T ss_dssp EEEE--ESBHHHHHT--------T---TCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--------HH
T ss_pred EEEE--EeCHHHHHH--------H---hcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--------HH
Confidence 7765 466654432 0 100 0000 000112334444433331 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceEEec---CC---CHHHHHHHHHcccEEEeCC---C----eE
Q 012238 376 EMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMFSFT---GL---NKAQSDNMTNKWHVYMTKD---G----RI 442 (467)
Q Consensus 376 ~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f~~~---~l---~~~~~~~ll~~~gI~v~~g---g----Ri 442 (467)
.++++.++..++++++.+.|+ +.+ ++++..+....++++ +. +.++.+++.++..+++.++ | |+
T Consensus 377 g~~~~~~~~~~~a~~l~~~L~-~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~ 452 (481)
T 4e1o_A 377 NLQAHVRHGTEMAKYFESLVR-NDP---SFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRF 452 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCT---TEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCC---CeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEE
Confidence 467788888999999999998 762 156554433333333 22 2345666666533554442 3 89
Q ss_pred EeccC--ChhhHHHHHHHHHHHHHhc
Q 012238 443 SLAGL--SLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 443 s~~~~--~~~~i~~~~~~l~~~l~~~ 466 (467)
+++.. +++++++++++|+++.+++
T Consensus 453 ~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 453 TVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 87643 5789999999999988754
No 222
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.82 E-value=2.4e-18 Score=178.26 Aligned_cols=326 Identities=14% Similarity=0.044 Sum_probs=198.5
Q ss_pred hHHHH-HHHHHHHhcCCCCcCCCCcchHHH----HHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHH----
Q 012238 103 LDVVK-KAENLMLERGENKEYLPIEGLAAF----NKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER---- 173 (467)
Q Consensus 103 ~~~v~-~a~~~~~~~~~~~~Y~~~~G~~~l----r~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~---- 173 (467)
++.+. +.+....+.+ ...|....+..++ ++.++++++. + ++++++ |.|||+|+.++......
T Consensus 121 ~~~~~~~~l~~~~n~~-~~~~~~s~~~~~le~~~~~~la~l~g~----~--~~~~~~--t~ggtea~~~al~~ar~~~~~ 191 (515)
T 2jis_A 121 PHALAGRIITESLNTS-QYTYEIAPVFVLMEEEVLRKLRALVGW----S--SGDGIF--CPGGSISNMYAVNLARYQRYP 191 (515)
T ss_dssp HHHHHHHHHHHHHCCC-TTCTTTCHHHHHHHHHHHHHHHHHHTC----S--SCEEEE--ESSHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhccC-CCchhhchHHHHHHHHHHHHHHHHhCC----C--CCCeEE--cCCcHHHHHHHHHHHHHHHhh
Confidence 44444 3444443332 2456555665444 4456666432 2 568888 99999998877333211
Q ss_pred -hC-CCC------EEEEcCCCCcchHHHHhhCCC---CeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCC
Q 012238 174 -YF-PGA------KVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAH 239 (467)
Q Consensus 174 -~~-~gd------~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~ 239 (467)
+. +|| +|+++.++|+.+...++..|. +++.+|++ +++.+|++.|++.+++. ..++++|++++|+
T Consensus 192 ~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~ 269 (515)
T 2jis_A 192 DCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGT 269 (515)
T ss_dssp THHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred HHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCC
Confidence 12 575 899999999999999998888 88999883 46789999999999741 1257899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEe
Q 012238 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319 (467)
Q Consensus 240 NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v 319 (467)
||||.+.+. ++|+++|+++|+++++|++|.++....... ...+ .......+++.|++|.++.| .++|+++
T Consensus 270 n~tG~i~~l---~~I~~la~~~g~~l~vD~a~~~~~~~~~~~-~~~~---~g~~~aD~v~~s~hK~l~~p-~g~G~l~-- 339 (515)
T 2jis_A 270 TVLGAFDPL---EAIADVCQRHGLWLHVDAAWGGSVLLSQTH-RHLL---DGIQRADSVAWNPHKLLAAG-LQCSALL-- 339 (515)
T ss_dssp TTTCCBCCH---HHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGG---TTGGGCSEEEECTTSTTCCC-SCCEEEE--
T ss_pred CCCCCccCH---HHHHHHHHHcCCeEEEehhhhhHHHhChhh-Hhhc---CCCccCCEEEECcccccCCC-CCeeEEE--
Confidence 999998774 577778999999999999998776532111 1111 11112347788999998744 5789986
Q ss_pred cCCH-HHHhhhhhhhHHHHHHHHHhhcc-------Cc------cCCCchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 012238 320 CSSS-DLAARCCEVAVIQVKSQLKRLAR-------PM------YSNPPVHGARIVANVVGNPALFDEWKAEMEMMAGRIK 385 (467)
Q Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~-------~~------~~~~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~ 385 (467)
+.++ ++++. +... ....+..... .. ......+.+.++...+. .+.++++.++..
T Consensus 340 ~~~~~~~~~~-~~~~---~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg--------~~g~~~~~~~~~ 407 (515)
T 2jis_A 340 LQDTSNLLKR-CHGS---QASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG--------DQGLERRIDQAF 407 (515)
T ss_dssp ESCCSCHHHH-HHCC------------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred EeChHHHHHH-HhcC---CchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHH
Confidence 4554 34432 0000 0000100000 00 00111333333333331 233667788888
Q ss_pred HHHHHHHHHhhhccCCCCCccccc-CCcceEEecCC---------CHH-----------HHHHHHHcccEEE-e----CC
Q 012238 386 NVRQKLFDSLSAKDKSGKDWSFIL-RQIGMFSFTGL---------NKA-----------QSDNMTNKWHVYM-T----KD 439 (467)
Q Consensus 386 ~~r~~l~~~l~~~~g~~~~~~~~~-~~~g~f~~~~l---------~~~-----------~~~~ll~~~gI~v-~----~g 439 (467)
++++++.+.|+ +.. + +++.. +..+.++|... +.+ ..+.+.+ .|+.+ . ++
T Consensus 408 ~~a~~l~~~L~-~~~--g-~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~-~G~~~~~~~~~~~ 482 (515)
T 2jis_A 408 VLARYLVEEMK-KRE--G-FELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVK-EGSMMIGYQPHGT 482 (515)
T ss_dssp HHHHHHHHHHH-TST--T-EEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHH-HTSCEEEEEEETT
T ss_pred HHHHHHHHHHh-cCC--C-EEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh-cCCEEEEEEEECC
Confidence 99999999998 652 1 55543 33455555211 111 2334554 47543 2 23
Q ss_pred --C--eEEec-c-CChhhHHHHHHHHHHHHHhc
Q 012238 440 --G--RISLA-G-LSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 440 --g--Ris~~-~-~~~~~i~~~~~~l~~~l~~~ 466 (467)
+ ||+++ . .+++++++++++|+++++++
T Consensus 483 ~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 483 RGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 2 99985 2 27799999999999988754
No 223
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.81 E-value=2.1e-18 Score=176.79 Aligned_cols=335 Identities=10% Similarity=-0.008 Sum_probs=208.1
Q ss_pred hHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCccccc-------CceeeeecCCchhHHHHHHHHHHH--
Q 012238 103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-------QRVATVQGLSGTGSLRLAAALIER-- 173 (467)
Q Consensus 103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-------~~i~~~~t~ggt~al~l~~~~l~~-- 173 (467)
+..+.+.+...++.+. ..|....+..++++.+++|+....|.+... ...++ |.|||+++.++......
T Consensus 87 ~~~~~~~l~~~~n~~~-~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~al~~ar~~~ 163 (475)
T 3k40_A 87 PAIVADMLSGAIACIG-FTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVALLGAKAKK 163 (475)
T ss_dssp HHHHHHHHHHHHCCCS-SSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccc-cCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHHHHHHHHHH
Confidence 4556666666666543 668788899999999988887666654221 24666 89999998876322211
Q ss_pred ---------------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEe
Q 012238 174 ---------------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLH 235 (467)
Q Consensus 174 ---------------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i 235 (467)
+.+++.|+++.++|..+...++..|++++.+|++ +++ +|++.|++.+++. ...+++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~ 240 (475)
T 3k40_A 164 LKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVV 240 (475)
T ss_dssp HHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEE
Confidence 1135689999999999999999999999999984 356 9999999999752 122677888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhc-CCeEEEEecCccCcccCCCccc
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG 314 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG 314 (467)
+.++|+||.+-+ +++|+++|++||+++++|++|........ . .+..... ..-..+..+++|.++.| ..+|
T Consensus 241 ~~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~---~--~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g 311 (475)
T 3k40_A 241 TLGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICP---E--YRHLMKGIESADSFNFNPHKWMLVN-FDCS 311 (475)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSG---G--GGGGGTTGGGCSEEEECHHHHSSCC-SSCE
T ss_pred EecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCH---h--hHHHhcCcccCCEEEECchhccCCC-CceE
Confidence 899999999755 55788889999999999999876432110 0 0011110 11246678999987644 4567
Q ss_pred eEEEecCCHHHHhhh--hhhhHHHHHH--HHHhhccCcc-CC--CchHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 012238 315 AMNVVCSSSDLAARC--CEVAVIQVKS--QLKRLARPMY-SN--PPVHGARIVANVVGNPALFDEWKAEMEMMAGRIKNV 387 (467)
Q Consensus 315 ~~~~v~~~~~~~~~~--~~~~~~~~~~--~l~~~~~~~~-~~--~~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~ 387 (467)
+++ +.+++..... ....+..-.. .......... .+ ...+.+.++...+. .+.++++.++..++
T Consensus 312 ~l~--~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--------~~g~~~~~~~~~~~ 381 (475)
T 3k40_A 312 AMW--LKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--------VENLQAHIRRHCNF 381 (475)
T ss_dssp EEE--ESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred EEE--EeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHH
Confidence 775 4665543210 0000000000 0000000000 00 11223333332221 23467788888999
Q ss_pred HHHHHHHhhhccCCCCCcccccC-CcceEEec--CC---CHHHHHHHHHcccEEEeCC---C----eEEeccC--ChhhH
Q 012238 388 RQKLFDSLSAKDKSGKDWSFILR-QIGMFSFT--GL---NKAQSDNMTNKWHVYMTKD---G----RISLAGL--SLAKC 452 (467)
Q Consensus 388 r~~l~~~l~~~~g~~~~~~~~~~-~~g~f~~~--~l---~~~~~~~ll~~~gI~v~~g---g----Ris~~~~--~~~~i 452 (467)
++++.+.|+ +++ ++++..+ ..++..|. +. +.++.+++.++.++++.++ | |++++.. +++++
T Consensus 382 a~~l~~~L~-~~~---g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di 457 (475)
T 3k40_A 382 AKQFGDLCV-ADS---RFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDM 457 (475)
T ss_dssp HHHHHHHHH-HST---TEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHH
T ss_pred HHHHHHHHh-cCC---CEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHH
Confidence 999999998 762 1565544 33433331 22 2345667776644454442 3 9997642 67899
Q ss_pred HHHHHHHHHHHHhc
Q 012238 453 EYLADAIIDSYHNV 466 (467)
Q Consensus 453 ~~~~~~l~~~l~~~ 466 (467)
++++++|+++.+++
T Consensus 458 ~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 458 EYSWKEVSAAADEM 471 (475)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 224
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.79 E-value=3.2e-18 Score=182.37 Aligned_cols=175 Identities=11% Similarity=-0.040 Sum_probs=124.0
Q ss_pred CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCCCCeE
Q 012238 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPWS 202 (467)
Q Consensus 124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-~~~~G~~~~ 202 (467)
+..-..++++.+|++++.. ..+++ ++|+++++..+ +.+.+.+||+|+++.|+|..+... ++..|++++
T Consensus 171 ~~~~i~e~e~~lA~~~gae-------~~i~v--~nGtt~an~~a--i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v 239 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNAD-------KTYFV--LGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPV 239 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred ChHHHHHHHHHHHHHHCCC-------cEEEE--CCHHHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEE
Confidence 4445789999999996432 24666 88888999987 556678999999999999988887 889999999
Q ss_pred EeeeecCCCCC----CChhhH-----HHHHHcCCCC---c----EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238 203 EYRYYDPKTVG----LDFEGM-----IADIKAAPGG---S----FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (467)
Q Consensus 203 ~v~~~~~~~~~----~d~~~l-----~~~l~~~~~~---~----~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li 266 (467)
.++...+ .++ +|++.+ ++++++.+++ + +++++++| ||||.+.+. ++|+++|+++|++++
T Consensus 240 ~v~~~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl---~~I~~la~~~g~~li 314 (730)
T 1c4k_A 240 YLQTNRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNA---HEVVKRIGHLCDYIE 314 (730)
T ss_dssp EECEEEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECH---HHHHHHHGGGBSEEE
T ss_pred EEeCCcc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCH---HHHHHHHHHcCCeEE
Confidence 8877432 333 799999 8888742100 2 67778888 699999875 577888999999999
Q ss_pred EeccCCCC-CCCCCCCC-hhHHHH--HHhcCCeEEEEecCccCcccCCCccceEE
Q 012238 267 FDVAYQGF-ASGSLDND-ASSVRL--FATRGMELLVAQSYSKNLGLYAERIGAMN 317 (467)
Q Consensus 267 ~Deay~~~-~~~~~~~~-~~~~~~--~~~~~~~~i~~~S~SK~~~~~G~RiG~~~ 317 (467)
+||+|... .++.. .. ...+.. +....++++++.|+||.+ +|.+.|+++
T Consensus 315 vDeAh~~~~~f~~~-~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I 366 (730)
T 1c4k_A 315 FDSAWVGYEQFIPM-MRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQI 366 (730)
T ss_dssp EECTTCCGGGSSGG-GGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEE
T ss_pred EEcccccccccCcc-cCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEE
Confidence 99998642 33210 00 000100 001123679999999975 567777665
No 225
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.76 E-value=2.8e-17 Score=176.55 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=123.4
Q ss_pred CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEe
Q 012238 125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY 204 (467)
Q Consensus 125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v 204 (467)
..-..++++.+++++.. .+.+++ ++|+++++..+ +.+.+.|||+|+++.|+|..+...++..|++++.+
T Consensus 204 ~g~v~~~ee~la~l~G~-------d~~i~~--~~Gtt~a~~~~--i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v 272 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGA-------DRSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYM 272 (755)
T ss_dssp CHHHHHHHHHHHHHHTC-------SEEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEE
T ss_pred ccHHHHHHHHHHHHhCC-------CceEEE--CCcHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEE
Confidence 34467788888888643 234666 88889999987 55567899999999999999888888999999999
Q ss_pred eeecCCCCC----C-----ChhhHHHHHHcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEe
Q 012238 205 RYYDPKTVG----L-----DFEGMIADIKAAPG-------GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFD 268 (467)
Q Consensus 205 ~~~~~~~~~----~-----d~~~l~~~l~~~~~-------~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~D 268 (467)
+...+ .++ + |++.+++++++.+. +++++++++| ||||.+.+. ++|+++|++||+++++|
T Consensus 273 ~~~~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl---~~I~~ia~~~~~~livD 347 (755)
T 2vyc_A 273 VPSRN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNA---KEAQDLLEKTSDRLHFD 347 (755)
T ss_dssp CCCBC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECH---HHHHHHHTTTCSEEEEE
T ss_pred eCCCC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCH---HHHHHHHHHcCCEEEEE
Confidence 87422 233 5 99999999975321 1236777888 799999875 57778899999999999
Q ss_pred ccCCCC-CCCCCCCChhHHHHH--Hh-cCCeEEEEecCccCcccCCCccceEEE
Q 012238 269 VAYQGF-ASGSLDNDASSVRLF--AT-RGMELLVAQSYSKNLGLYAERIGAMNV 318 (467)
Q Consensus 269 eay~~~-~~~~~~~~~~~~~~~--~~-~~~~~i~~~S~SK~~~~~G~RiG~~~~ 318 (467)
++|... .++..-.+...+ .. .+ ..++++++.|+||.+ +|.+.|.+++
T Consensus 348 eA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~ 398 (755)
T 2vyc_A 348 EAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYIH 398 (755)
T ss_dssp CTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEE
T ss_pred CcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeeee
Confidence 998643 222100000111 01 11 234778999999985 5777565543
No 226
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.73 E-value=5.6e-17 Score=160.95 Aligned_cols=319 Identities=12% Similarity=0.002 Sum_probs=187.2
Q ss_pred CCCCchHHHHHHHHHHHhc----CC------CCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHH
Q 012238 98 LQPYVLDVVKKAENLMLER----GE------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA 167 (467)
Q Consensus 98 ~~p~~~~~v~~a~~~~~~~----~~------~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~ 167 (467)
+..++++.|++++.+.+.. +. ........-+.+.|+.++++++... +++|+++ |.|||++++++
T Consensus 34 gpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~-----~~evif~-t~~~T~a~n~a 107 (386)
T 3qm2_A 34 GPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPS-----NYKVLFC-HGGGRGQFAGV 107 (386)
T ss_dssp SSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCT-----TEEEEEE-ESCTTHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEEEE-cCCchHHHHHH
Confidence 4445689999998765421 00 0011113457899999999986531 2466661 48999999998
Q ss_pred HHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC
Q 012238 168 AALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI 244 (467)
Q Consensus 168 ~~~l~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~ 244 (467)
+...+.+||+|++..-+... +...++..| ++..++.+ ++++..++++.+++.++ ++++++.+++..|.||+
T Consensus 108 --i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~tG~ 181 (386)
T 3qm2_A 108 --PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETIDGI 181 (386)
T ss_dssp --HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETTTTE
T ss_pred --HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCCcCE
Confidence 55567799998755544332 334556778 88888874 12222367777776665 56778888888888899
Q ss_pred C-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCH
Q 012238 245 D-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS 323 (467)
Q Consensus 245 ~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~ 323 (467)
. .+.+++ . +|+++++|.+ +.+..-..+.+ .. + +.+.|-.|.+|++| +|+++ ..+
T Consensus 182 ~i~pi~~i---~-----~g~~~~vDa~-qs~g~~pidv~---------~~-~-~~~~s~hK~lGP~G--~g~l~---v~~ 236 (386)
T 3qm2_A 182 AIDETPDF---G-----PEVVVTADFS-STILSAPLDVS---------RY-G-VIYAGAQKNIGPAG--LTLVI---VRE 236 (386)
T ss_dssp ECCCCCCC---C-----TTCCEEEECT-TTTTSSCCCGG---------GC-S-EEEEETTTTTCCTT--EEEEE---EEG
T ss_pred ecCchhhh---c-----CCCEEEEEcc-cccCCCCCCcc---------cc-C-EEEEecccccCCCc--cEEEE---ECH
Confidence 6 665543 2 7999999999 55544322221 11 2 45688899999888 57776 333
Q ss_pred HHHhhhhh--hhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccC
Q 012238 324 DLAARCCE--VAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKDK 400 (467)
Q Consensus 324 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~g 400 (467)
+..+...+ +.+.+.........+..+.+.+. ..++..+++ +. .+. .++++.++.++.++++++.|+ +++
T Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~--i~~l~~Al~---~~--~~~gG~~~i~~~~~~l~~~l~~~l~-~~~ 308 (386)
T 3qm2_A 237 DLLGKAHESCPSILDYTVLNDNDSMFNTPPTFA--WYLSGLVFK---WL--KAQGGVAAMHKINQQKAELLYGVID-NSD 308 (386)
T ss_dssp GGCSCCCTTSCGGGCHHHHHHC-------CCSH--HHHHHHHHH---HH--HHHTHHHHHHHHHHHHHHHHHHHHH-TCS
T ss_pred HHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHH--HHHHHHHHH---HH--HHhcCHHHHHHHHHHHHHHHHHHHH-HCC
Confidence 33322000 00101111111111222223332 223333331 10 122 377888999999999999998 776
Q ss_pred CCCCcccc-cC--C-cce--EEecC--CCHHHHHHHHHcccEEEeCC----C--eEEeccC-ChhhHHHHHHHHHHHHHh
Q 012238 401 SGKDWSFI-LR--Q-IGM--FSFTG--LNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 401 ~~~~~~~~-~~--~-~g~--f~~~~--l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~~~i~~~~~~l~~~l~~ 465 (467)
+ .... .+ . .+. |.+.+ ++.+++.. ++++||.+.+| | |+|+... +++++++++++|+++.++
T Consensus 309 ~---~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 309 F---YRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp S---EECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred C---cccCCCHHHcCceEEEEECCCccccHHHHHH-HHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 1111 11 1 122 22232 34444555 55679999887 3 9998764 679999999999998875
No 227
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=162.63 Aligned_cols=315 Identities=13% Similarity=0.053 Sum_probs=192.9
Q ss_pred CCCchHHHHHHHHHHHhcCC---CC----c-CCC--CcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHH
Q 012238 99 QPYVLDVVKKAENLMLERGE---NK----E-YLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA 168 (467)
Q Consensus 99 ~p~~~~~v~~a~~~~~~~~~---~~----~-Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~ 168 (467)
..++|+.|.+++.+.+.... .. . ..+ ..-+.+.|+.++++++... +++|++ .|.|||++++++
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~-----~~evif-~t~~~T~a~n~a- 93 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPD-----NYKVIF-LQGGGCGQFSAV- 93 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCT-----TEEEEE-ESSHHHHHHHHH-
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CCeEEE-EcCchHHHHHHH-
Confidence 33458999999988763200 00 0 111 2236788899999986531 246766 147999999998
Q ss_pred HHHHHhCC--CCEEEEcCCCCcc--hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCC
Q 012238 169 ALIERYFP--GAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI 244 (467)
Q Consensus 169 ~~l~~~~~--gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~ 244 (467)
+...+.+ ||+|++..-++.. +...++..|..++.++. +++++.+++.++..++ ++++++.+++..|.||+
T Consensus 94 -~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~--~~~~~~~~~~~~~~i~---~~t~lV~~~h~et~tG~ 167 (377)
T 3e77_A 94 -PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPK--LGSYTKIPDPSTWNLN---PDASYVYYCANETVHGV 167 (377)
T ss_dssp -HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCC--CSSSCSCCCGGGCCCC---TTCSCEEEESEETTTTE
T ss_pred -HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecc--CCCcCCCCChHHhccC---CCccEEEEeCccCchhe
Confidence 4445544 9999877665533 34456677877776666 3345677777755554 56777888888888899
Q ss_pred CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceEEEecCCHH
Q 012238 245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD 324 (467)
Q Consensus 245 ~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~ 324 (467)
+.+. +|+++|+++++|.+ +.+.....+.+. . + +++.|-.|.+|++| +|+++ ..++
T Consensus 168 ~~pi--------i~~~~~~~~~vD~~-q~~g~~~id~~~--------~--~-~~~~s~~K~~gp~G--~g~l~---~~~~ 222 (377)
T 3e77_A 168 EFDF--------IPDVKGAVLVCDMS-SNFLSKPVDVSK--------F--G-VIFAGAQKNVGSAG--VTVVI---VRDD 222 (377)
T ss_dssp ECSS--------CCCCTTCCEEEECT-TTTTSSCCCGGG--------C--S-EEEEEGGGTTSCTT--CEEEE---EETT
T ss_pred Echh--------hhccCCCEEEEEcc-cccCCCCCchhh--------c--C-EEEEecccccCCCc--cEEEE---EcHH
Confidence 9986 26789999999999 555543222211 1 2 46788899999888 47775 2233
Q ss_pred HHhhhhh---hhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcc-
Q 012238 325 LAARCCE---VAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA-EMEMMAGRIKNVRQKLFDSLSAKD- 399 (467)
Q Consensus 325 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~l~~~~~~~~~~r~~l~~~l~~~~- 399 (467)
+.+. ++ +.+.++....+.. ..+..++.....++..+|+ +. .+. .++++.++.++..+++++.|+ ++
T Consensus 223 ~l~~-~~~~~p~~~~~~~~~~~~--~~~~Tp~v~~i~~l~~al~---~l--~~~GG~~~i~~~~~~l~~~l~~~L~-~~~ 293 (377)
T 3e77_A 223 LLGF-ALRECPSVLEYKVQAGNS--SLYNTPPCFSIYVMGLVLE---WI--KNNGGAAAMEKLSSIKSQTIYEIID-NSQ 293 (377)
T ss_dssp SCSC-CCTTSCGGGCHHHHHTTT--TCSSCCCHHHHHHHHHHHH---HH--HHTTHHHHHHHHHHHHHHHHHHHHH-TST
T ss_pred HHhh-ccCCCCchhhHHHHhhcC--CCCCCchHHHHHHHHHHHH---HH--HHccCHHHHHHHHHHHHHHHHHHHH-hcC
Confidence 3222 00 1111111111111 1122344444334433332 10 122 377888999999999999999 76
Q ss_pred CCCCCccccc----CCcce---EEecCCC--H----HHHHHHHHcccEEEeCC----C--eEEeccC-ChhhHHHHHHHH
Q 012238 400 KSGKDWSFIL----RQIGM---FSFTGLN--K----AQSDNMTNKWHVYMTKD----G--RISLAGL-SLAKCEYLADAI 459 (467)
Q Consensus 400 g~~~~~~~~~----~~~g~---f~~~~l~--~----~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~~~i~~~~~~l 459 (467)
|+ ...+ ...+. |.+.+++ . .++..+. ++||.+.+| | |+|+... +++++++++++|
T Consensus 294 g~----~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al 368 (377)
T 3e77_A 294 GF----YVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFM 368 (377)
T ss_dssp TS----EECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred Cc----eecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHH
Confidence 42 3111 11222 3334442 2 3344444 569999887 3 9998764 779999999999
Q ss_pred HHHHHh
Q 012238 460 IDSYHN 465 (467)
Q Consensus 460 ~~~l~~ 465 (467)
++++++
T Consensus 369 ~~~~~~ 374 (377)
T 3e77_A 369 KKFLEM 374 (377)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 228
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.72 E-value=2.1e-16 Score=155.36 Aligned_cols=322 Identities=10% Similarity=0.046 Sum_probs=193.8
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhc---CCCC----cCCC---CcchHHHHHHHHHHHhCCCCcccccCcee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GENK----EYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVA 153 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~---~~~~----~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~ 153 (467)
++++|+.|. .++++.|++++.+.+.. +... .+.. ..-+.+.|+.++++++... +.+|+
T Consensus 5 ~~~~f~pgp-------t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~-----~~~v~ 72 (361)
T 3m5u_A 5 RKINFSAGP-------STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELND-----DYEVL 72 (361)
T ss_dssp CCEECCSSS-------CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCT-----TEEEE
T ss_pred ceEeecCCC-------CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEE
Confidence 678888652 33588999999886632 0000 1101 2346788899999986531 33554
Q ss_pred eeecCCchhHHHHHHHHHHHhCCCCEEE-EcCCCCc-chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE
Q 012238 154 TVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF 231 (467)
Q Consensus 154 ~~~t~ggt~al~l~~~~l~~~~~gd~Vl-v~~P~y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 231 (467)
++ |.|||++++++ +...+ +||+++ +..-.|. .+...++..|+++..++.+.+..+.++++. + ++ ++++
T Consensus 73 f~-t~~~T~a~n~~--~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~---~~t~ 142 (361)
T 3m5u_A 73 FL-QGGASLQFAMI--PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FS---DNAD 142 (361)
T ss_dssp EE-SSHHHHHHHHH--HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CC---TTSS
T ss_pred EE-cCcHHHHHHHH--HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh--h-cC---CCCC
Confidence 32 89999999998 44455 888763 3333332 234456778999999998432212246665 3 55 5677
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCC
Q 012238 232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE 311 (467)
Q Consensus 232 ~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 311 (467)
++.+++..|.||+..+. | ++ +|+++++|.+ +.+.....+.+ .-.+++.|..|.+|++|
T Consensus 143 lv~~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~-q~~g~~~id~~-----------~~d~~~~s~~K~~gp~G- 200 (361)
T 3m5u_A 143 YAYICSNNTIYGTQYQN-----Y---PK-TKTPLIVDAS-SDFFSRKVDFS-----------NIALFYGGVQKNAGISG- 200 (361)
T ss_dssp EEEEESEETTTTEECSS-----C---CC-CSSCEEEECG-GGTTSSCCCCT-----------TEEEEEEETTTTSSCTT-
T ss_pred EEEEeCCCCCcceeCCc-----c---cc-cCCEEEEEcc-cccCCCCCCcc-----------cCCEEEEechhccCCCc-
Confidence 88888888888998762 3 33 4999999998 55554333222 12377889999999888
Q ss_pred ccceEEEecCCHHHHhhhhh---hhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHH
Q 012238 312 RIGAMNVVCSSSDLAARCCE---VAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA--EMEMMAGRIKN 386 (467)
Q Consensus 312 RiG~~~~v~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~l~~~~~~~~~ 386 (467)
+|+++ ..+++.+...+ +.+.+........ ..+..++.....++..+|+ + ..+ .++++.++.++
T Consensus 201 -~g~l~---~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~Tp~v~~i~~l~~al~---~---l~~~gG~~~i~~~~~~ 268 (361)
T 3m5u_A 201 -LSCIF---IRKDMLERSKNKQIPSMLNYLTHAENQ--SLFNTPPTFAIYMFNLEMD---W---LLNQGGLDKVHEKNSQ 268 (361)
T ss_dssp -CEEEE---EEHHHHHHHHTCCCCGGGCHHHHHHTT--TCSSCCCHHHHHHHHHHHH---H---HHTTTCHHHHHHHHHH
T ss_pred -cEEEE---EcHHHHhhhcCCCCCceeehHHHhhcC--CCCCCccHHHHHHHHHHHH---H---HHHccCHHHHHHHHHH
Confidence 57775 44555544100 1111111111111 1122344443333333332 1 012 26788888999
Q ss_pred HHHHHHHHhhhccCCCCCc-ccc-cC---CcceE--EecC---CCHHHHHHHHHcccEEEeCC----C--eEEeccC-Ch
Q 012238 387 VRQKLFDSLSAKDKSGKDW-SFI-LR---QIGMF--SFTG---LNKAQSDNMTNKWHVYMTKD----G--RISLAGL-SL 449 (467)
Q Consensus 387 ~r~~l~~~l~~~~g~~~~~-~~~-~~---~~g~f--~~~~---l~~~~~~~ll~~~gI~v~~g----g--Ris~~~~-~~ 449 (467)
.++++++.|+ +++- + ... .+ ..+.. .+.+ ++.++. ..++++||.+.+| | |+|+... ++
T Consensus 269 l~~~l~~~L~-~~~g---~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~-~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~ 343 (361)
T 3m5u_A 269 KATMLYECID-LSNG---FYKGHADKKDRSLMNVSFNIAKNKDLEPLFV-KEAEEAGMIGLKGHRILGGIRASIYNALNL 343 (361)
T ss_dssp HHHHHHHHHH-TSTT---SEEESSCGGGBCSSEEEEEESSCTTHHHHHH-HHHHHTTEECCBCCTTTCSEEEECCTTSCH
T ss_pred HHHHHHHHHH-HCCC---eeeccCCHHHcCCeEEEEECCCchhhhHHHH-HHHHHCCCEEecCCCccCeEEEEccCCCCH
Confidence 9999999998 7751 2 221 11 11222 2233 233344 4556679999887 3 9998764 67
Q ss_pred hhHHHHHHHHHHHHHhc
Q 012238 450 AKCEYLADAIIDSYHNV 466 (467)
Q Consensus 450 ~~i~~~~~~l~~~l~~~ 466 (467)
+++++++++|+++.++.
T Consensus 344 edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 344 DQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998763
No 229
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.70 E-value=1.7e-15 Score=152.75 Aligned_cols=331 Identities=13% Similarity=0.056 Sum_probs=198.3
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCch
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT 161 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt 161 (467)
+.+.||+..|.-...-|. -.|.|.+|+.+.+....... .+..-..++.+.+++++.. .+.+.+ +++|+
T Consensus 86 G~~ylD~~~g~~~~~lGH--~hp~v~~Av~~q~~~~~~~~-~~~~~~~~lae~l~~~~p~-------~~~v~f--~~SGs 153 (454)
T 4ao9_A 86 GHRYADFIAEYTAGVYGH--SAPEIRDAVIEAMQGGINLT-GHNLLEGRLARLICERFPQ-------IEQLRF--TNSGT 153 (454)
T ss_dssp CCEEEESSGGGGTTTTCS--CCHHHHHHHHHHHHTCSCCC-SEESSHHHHHHHHHHHSTT-------CSEEEE--ESSHH
T ss_pred CCEEEEccccHHhhcccC--CCHHHHHHHHHHHhcCCCcc-CCcHHHHHHHHHHHHhCCC-------CCEEEE--eCchH
Confidence 457899987754222233 36889999988886643222 2344456777778877532 468888 99999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh----CCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238 162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237 (467)
Q Consensus 162 ~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~ 237 (467)
+|...+.++.......++|+...-+|......+-. .+........ + ..|.+.+++.+++..+....|++-.
T Consensus 154 EA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~--p---~nd~~~l~~~l~~~~~~iAavIvEP 228 (454)
T 4ao9_A 154 EANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL--P---YNDAQTARAQIERHGPEIAVVLVEP 228 (454)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE--C---TTCHHHHHHHHHHTGGGEEEEEECS
T ss_pred HHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC--C---CchHHHHHHHHhhcCCceEEEEecc
Confidence 99999866554444557999999998764322111 1111111111 1 1488999999987655666777666
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCCCccceE
Q 012238 238 AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM 316 (467)
Q Consensus 238 p~NPTG~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~ 316 (467)
.+.-.|.+. +++.+++|.++|++||+++|+||+..+ ..+. .+.. ....-.++++ +++|.+| .|+.+|.+
T Consensus 229 v~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~----~~a~-e~~gv~PDi~---t~gK~lg-gG~Piga~ 298 (454)
T 4ao9_A 229 MQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAP----HGLA-NKLGIRSDLT---TLGKYIG-GGMSFGAF 298 (454)
T ss_dssp EESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGST----TCHH-HHHTCCCSEE---EEEGGGG-TTSSCEEE
T ss_pred ccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCcc----ccch-hccCCCCcEE---EeccccC-CCCcceee
Confidence 666677654 577899999999999999999999754 2221 1111 2222234443 5679998 78999998
Q ss_pred EEecCCHHHHhhhhhhhHHHHHHHHHhhc----cCccCCCchHHHHHHHHHh---CChhhHHHHHHHHHHHHHHHHHHHH
Q 012238 317 NVVCSSSDLAARCCEVAVIQVKSQLKRLA----RPMYSNPPVHGARIVANVV---GNPALFDEWKAEMEMMAGRIKNVRQ 389 (467)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~L---~~~~~~~~~~~~l~~~~~~~~~~r~ 389 (467)
. +.+++++. +.... ...+.+.++++..++...| .++++ .+.+.+..++ .++
T Consensus 299 ~---~~~ei~~~------------~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~----~~~~~~~g~~---l~~ 356 (454)
T 4ao9_A 299 G---GRADVMAL------------FDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEA----AGALAERGEA---LRA 356 (454)
T ss_dssp E---ECHHHHGG------------GCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHH----HHHHHHHHHH---HHH
T ss_pred e---eHHHHHHH------------HhhccCCccccCCCCCCHHHHHHHHHHHHHHhccCh----hHHHHHHHHH---HHH
Confidence 4 78887776 43211 1112344555555554444 33322 1222222222 233
Q ss_pred HHHHHhhhccCCCCCcccccCCcceEE--ecC-----------CCH----HHHHHHHHcccEEEeCCCeEEecc-CChhh
Q 012238 390 KLFDSLSAKDKSGKDWSFILRQIGMFS--FTG-----------LNK----AQSDNMTNKWHVYMTKDGRISLAG-LSLAK 451 (467)
Q Consensus 390 ~l~~~l~~~~g~~~~~~~~~~~~g~f~--~~~-----------l~~----~~~~~ll~~~gI~v~~ggRis~~~-~~~~~ 451 (467)
.|.+.+. +.+++. .+...|.++- |.. .+. .++..+++ +||++.|.|++.+.. +++++
T Consensus 357 ~L~~l~~-~~~~~~---~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~Gv~~~p~~~~~~s~~~T~~d 431 (454)
T 4ao9_A 357 RLNALCA-NEGVAM---QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN-EDIYSSPRGFVVLSLPLTDAD 431 (454)
T ss_dssp HHHHHHH-HHTBSC---EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH-TTEECCTTCEEECCTTCCHHH
T ss_pred HHHHHHh-hCCCCE---EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH-CCEEEcCCCCEEEeCCCCHHH
Confidence 3333333 444322 1222333331 111 122 23556676 499999999665432 48899
Q ss_pred HHHHHHHHHHHHHhc
Q 012238 452 CEYLADAIIDSYHNV 466 (467)
Q Consensus 452 i~~~~~~l~~~l~~~ 466 (467)
|++++++|++++.++
T Consensus 432 Id~~l~al~~~l~~~ 446 (454)
T 4ao9_A 432 IDRYVAAIGSFIGGH 446 (454)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999764
No 230
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.68 E-value=8.9e-16 Score=162.31 Aligned_cols=171 Identities=12% Similarity=0.085 Sum_probs=118.9
Q ss_pred CCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeE
Q 012238 123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS 202 (467)
Q Consensus 123 ~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~ 202 (467)
.|..-+.++++.+|++++.. .-+++ ++|++.|+..+ +.+.+.|||+|+++.|+|..+...++..|++++
T Consensus 192 ~~~g~i~eaE~~lA~~fGa~-------~a~~v--~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv 260 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFNAD-------RSYMV--TNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPI 260 (715)
T ss_dssp TTBTHHHHHHHHHHHHHTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEE
T ss_pred CCcHHHHHHHHHHHHHhCCC-------CceEE--CcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEEE
Confidence 35555789999999996542 24555 77778888776 566688999999999999999999999999999
Q ss_pred EeeeecCCCCCC---------ChhhHHHHHHcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccC
Q 012238 203 EYRYYDPKTVGL---------DFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY 271 (467)
Q Consensus 203 ~v~~~~~~~~~~---------d~~~l~~~l~~~~~--~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay 271 (467)
+++... +.+++ |++.+++++++.+. .++++++++| ||+|.+++.+++. ++|+++ .+++||+|
T Consensus 261 ~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~---ela~~~--~livDEAH 333 (715)
T 3n75_A 261 YFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIK---KTLDVK--SIHFDSAW 333 (715)
T ss_dssp EECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHH---HHCCCS--EEEEECTT
T ss_pred EEeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHH---HHhCcC--cEEEcccc
Confidence 998643 24443 89999999986431 1236777888 9999999877554 556655 37899998
Q ss_pred CCCC-CCCCCCChhHHHHHHhcC---Ce-EEEEecCccCcccCCCcc-ceEE
Q 012238 272 QGFA-SGSLDNDASSVRLFATRG---ME-LLVAQSYSKNLGLYAERI-GAMN 317 (467)
Q Consensus 272 ~~~~-~~~~~~~~~~~~~~~~~~---~~-~i~~~S~SK~~~~~G~Ri-G~~~ 317 (467)
.... ++..-..... ...+ +. +++++|++|+++ |+.. |++.
T Consensus 334 ~~~~~f~~~~~~~~a----l~~g~~aD~vii~~~S~hKtL~--gltqgs~i~ 379 (715)
T 3n75_A 334 VPYTNFSPIYEGKCG----MSGGRVEGKVIYETQSTHKLLA--AFSQASMIH 379 (715)
T ss_dssp CTTGGGSGGGTTSST----TSSSCCTTCEEEEEECHHHHSS--CCTTCEEEE
T ss_pred ccccccCCccccccc----cccCcCCCEEEEEEeccccccc--CCCCeeEEE
Confidence 7543 3310000000 1111 23 367999999964 5533 5553
No 231
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.54 E-value=9.9e-13 Score=129.23 Aligned_cols=327 Identities=16% Similarity=0.162 Sum_probs=197.9
Q ss_pred CcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCCCcCCC------CcchHHHHH---HHHHHHhCCCCcccccCceee
Q 012238 84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------IEGLAAFNK---VTAELLFGADNSVLKEQRVAT 154 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~~~Y~~------~~G~~~lr~---aia~~l~~~~~~~~~~~~i~~ 154 (467)
.-|+|=..++ ++++.|++++...+.+.+..+|+. ..-++++.. .-|..+++.. . .+.-+=
T Consensus 55 ~~ieLIASEN-------~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~---~-A~w~VN 123 (490)
T 3ou5_A 55 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD---P-AQWGVN 123 (490)
T ss_dssp HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCC---T-TTEEEE
T ss_pred cCceEecCCC-------cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCC---c-cccCCC
Confidence 5688876554 248999999999886655555532 222333333 2333334331 1 121123
Q ss_pred eecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--------HHhhCCC--CeEEeeeecCCCCCCChhhHHHHHH
Q 012238 155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN--------IFNDARV--PWSEYRYYDPKTVGLDFEGMIADIK 224 (467)
Q Consensus 155 ~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~--------~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~ 224 (467)
||..+|+.|...+ +++++.|||+|+..+....++.. -+...|. +.+.|+++ ++++.+|.|.+++...
T Consensus 124 VQP~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd-~~t~~IDyd~~~~~A~ 200 (490)
T 3ou5_A 124 VQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALTAR 200 (490)
T ss_dssp CCCSSHHHHHHHH--HHHHCC-CCCEECBC----------------------------CBCEE-TTTTEECHHHHHHHHH
T ss_pred CCcCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccC-CCCCcccHHHHHHHHh
Confidence 5678999999888 77889999999999977665432 1122232 45556664 5577899999999988
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCC-CCCCCCCCCChhHHHHHHhcCCeEEEEecCc
Q 012238 225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYS 303 (467)
Q Consensus 225 ~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 303 (467)
+ .++++|+.....+|-= ++ ++++.++|.+.|.++++|.++. ++..++.-.+ ++ +. -.|+..|-.
T Consensus 201 ~--~kPklIi~G~SaY~r~--id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~ps--P~----~~--ADvVTtTTH 265 (490)
T 3ou5_A 201 L--FRPRLIIAGTSAYARL--ID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----KH--ADIVTTTTH 265 (490)
T ss_dssp H--HCCSEEEECCSSCCSC--CC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC--GG----GT--CSEEEEESS
T ss_pred h--cCCCeEEECCccCccc--cC---HHHHHHHHhhcccEEEechhhhhhhhcccccCC--cc----cc--ceEEecccc
Confidence 7 4566888777666653 33 5566777889999999999963 4443332111 22 11 247788999
Q ss_pred cCcccCCCccceEEEecCCH--------------HHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhh
Q 012238 304 KNLGLYAERIGAMNVVCSSS--------------DLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPAL 369 (467)
Q Consensus 304 K~~~~~G~RiG~~~~v~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 369 (467)
|+| +|-|-|.|. +... ++.+. +....-+...+.|.....++.++ .+
T Consensus 266 KTL--rGPrGG~Il--~~~~~~~~~~k~~~~~~~~~~kk------------in~aVFPg~qggp~~h~IAAkAV----af 325 (490)
T 3ou5_A 266 KTL--RGARSGLIF--YRKGVKAVDPKTGREIPYTFEDR------------INFAVFPSLQGGPHNHAIAAVAV----AL 325 (490)
T ss_dssp STT--CSCSCEEEE--EECSEEEECC--CCEEECCCHHH------------HHHHHTTTTCSSCCHHHHHHHHH----HH
T ss_pred ccc--cCCCceEEE--eccccccccccccchhHHHHHHH------------HHhhcCccccccchHHHHHHHHH----HH
Confidence 997 677878875 4331 33334 66555555444443333332222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCcceE-Eec-----CCCHHHHHHHHHcccEEEeC----C
Q 012238 370 FDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKSGKDWSFILRQIGMF-SFT-----GLNKAQSDNMTNKWHVYMTK----D 439 (467)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~~~~g~f-~~~-----~l~~~~~~~ll~~~gI~v~~----g 439 (467)
.+.+..+.....++..++.+.|.+.|. +.| ++++....-.+ +++ +++...++++|++.||.+.. +
T Consensus 326 ~Ea~~p~fk~Ya~qVv~NAkaLA~~L~-~~G----~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~ 400 (490)
T 3ou5_A 326 KQACTPMFREYSLQVLKNARAMADALL-ERG----YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPG 400 (490)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHH-HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTT
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHH-hCC----CeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCC
Confidence 333344566778888889999999999 888 46554333333 333 45788899999999998753 2
Q ss_pred --------C-eEEec-----cCChhhHHHHHHHHHHHHH
Q 012238 440 --------G-RISLA-----GLSLAKCEYLADAIIDSYH 464 (467)
Q Consensus 440 --------g-Ris~~-----~~~~~~i~~~~~~l~~~l~ 464 (467)
| ||... ++.+++++++.+.|.+++.
T Consensus 401 D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 401 DRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3 88733 3578999999999988764
No 232
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.49 E-value=7.2e-12 Score=123.72 Aligned_cols=178 Identities=11% Similarity=0.000 Sum_probs=117.1
Q ss_pred HHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCC----CCEEEEcCCCCcchHHHHhhCCCCeEEeee-ecC
Q 012238 135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP----GAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDP 209 (467)
Q Consensus 135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~----gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~ 209 (467)
+.+|+... |.+.. ...++ ++|+|+++..+ +++.+.+ ||+|+++..++......+...|+++++++. .++
T Consensus 122 ~ld~L~~~-G~~~~-~~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~ 195 (501)
T 3hl2_A 122 VLDIIKLA-GVHTV-ANCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEG 195 (501)
T ss_dssp HHHHHHHT-TCTTC-CEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEET
T ss_pred HHHHHHHc-CCCCC-CcEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecc
Confidence 33454443 55422 23555 69999777765 5556653 499999999999999999999999999854 334
Q ss_pred CCCCCChhhHHHHHHcCCCCcEEEEe-CCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHH
Q 012238 210 KTVGLDFEGMIADIKAAPGGSFILLH-GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288 (467)
Q Consensus 210 ~~~~~d~~~l~~~l~~~~~~~~~i~i-~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 288 (467)
+..++|++.+++++++.+...+++++ +.++|-.|.+ +++++|+++|++||+++++|+||...... ...-+..
T Consensus 196 ~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~----~~~lp~s 268 (501)
T 3hl2_A 196 DELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSK----CMHLIQQ 268 (501)
T ss_dssp TEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHH----HHHHHHH
T ss_pred cccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhh----hhhhHHH
Confidence 46789999999999875434444443 3344433343 35678888899999999999998654310 0111122
Q ss_pred HHhcCCeEEEEecCccCcccCCCccceEEEecCCHHHHhh
Q 012238 289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR 328 (467)
Q Consensus 289 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~ 328 (467)
....+.-.+++.|..|++-+| +. |+++ ...+++++++
T Consensus 269 A~~~GrAD~vVqS~HK~llvp-IG-G~ii-~~~d~e~l~~ 305 (501)
T 3hl2_A 269 GARVGRIDAFVQSLDKNFMVP-VG-GAII-AGFNDSFIQE 305 (501)
T ss_dssp HHHHSCCCEEEEEHHHHHCCC-SS-CEEE-EESCHHHHHH
T ss_pred HHhcCCCcEEEecccccceee-cC-ceEE-EeCCHHHHHH
Confidence 233343456899999998655 21 3342 2467777766
No 233
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.43 E-value=2.1e-11 Score=123.29 Aligned_cols=342 Identities=13% Similarity=0.051 Sum_probs=188.0
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCCC--CcCCCCcchHHHHHHHHHHHhCCCCcccccCceeeeecCC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS 159 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g 159 (467)
+.+.||+..|.--..-|. -.|.|.+|+.+.+..... ..+.+.....++-+.+++..-... .+++++ +++
T Consensus 63 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~~v~f--~~s 133 (456)
T 4atq_A 63 GNSFIDLGSGIAVTSVGA--SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDH-----AKRTVL--FNS 133 (456)
T ss_dssp SCEEEESSHHHHTCTTCT--TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS-----CEEEEE--ESS
T ss_pred CCEEEEccccHHHHhcCC--CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCC-----CcEEEE--eCC
Confidence 357899988754222233 367888888877654221 122344445566666666642211 346777 899
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCC-------------CCeEEeeeecC----CCCCCChhhHHH
Q 012238 160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDAR-------------VPWSEYRYYDP----KTVGLDFEGMIA 221 (467)
Q Consensus 160 gt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~-~~~~G-------------~~~~~v~~~~~----~~~~~d~~~l~~ 221 (467)
|++|.+.+.++........+|+...-+|.+.... +...+ ..+..+|.... .....+.+.+++
T Consensus 134 GsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 213 (456)
T 4atq_A 134 GAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKR 213 (456)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHH
Confidence 9999999966655555567999999999765332 22111 12333443111 111123333333
Q ss_pred HHHc-----CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCe
Q 012238 222 DIKA-----APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295 (467)
Q Consensus 222 ~l~~-----~~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 295 (467)
.++. .+.+...+++-.-+.-.|.+ ++++-+++|.++|++||+++|+||+..+|.-.+ ..+.. ....-.++
T Consensus 214 ~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG---~~~a~-e~~gv~PD 289 (456)
T 4atq_A 214 AITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG---EWFAV-DHEGVVPD 289 (456)
T ss_dssp HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS---SSSGG-GGTTCCCS
T ss_pred HHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc---ccccc-cccCCCCc
Confidence 3321 12355566666555556755 567789999999999999999999988764221 11111 11122234
Q ss_pred EEEEecCccCcccCCCccceEEEecCCHHHHhhhhhhhHHHHHHHHHhhccCccCCCchHHHHHHHHHhCChhhHHHHHH
Q 012238 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRLARPMYSNPPVHGARIVANVVGNPALFDEWKA 375 (467)
Q Consensus 296 ~i~~~S~SK~~~~~G~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 375 (467)
++ .++|.+| .|+.+|.++ ..+++.+. +.......+.+.+.++..++.+.|+- +.+
T Consensus 290 iv---t~gK~lg-gg~P~~av~---~~~~i~~~------------~~~~~~~~Tf~gnpla~aaala~L~~--i~~---- 344 (456)
T 4atq_A 290 II---TMAKGIA-GGLPLSAIT---GRADLLDA------------VHPGGLGGTYGGNPVACAAALAAIDT--MEQ---- 344 (456)
T ss_dssp EE---EECGGGG-TTSSCEEEE---EEHHHHTT------------SCTTSSCCSSSSCHHHHHHHHHHHHH--HHH----
T ss_pred hh---hhhhccc-CcCCceeeE---ecHHHHhc------------ccccCCCCCCCCChHHHHhhHHHHHH--Hhh----
Confidence 43 4579988 889999985 66777665 43332233445556666666655531 110
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---ccCCCC-C-cccccCCcceEEecCC--------C----HHHHHHHHHcccEEEeC
Q 012238 376 EMEMMAGRIKNVRQKLFDSLSA---KDKSGK-D-WSFILRQIGMFSFTGL--------N----KAQSDNMTNKWHVYMTK 438 (467)
Q Consensus 376 ~l~~~~~~~~~~r~~l~~~l~~---~~g~~~-~-~~~~~~~~g~f~~~~l--------~----~~~~~~ll~~~gI~v~~ 438 (467)
+...++.++.-+++.+.|++ ++.... . +.-+...| +++-+.+ + ..+...+++ +|+++.+
T Consensus 345 --~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~G-l~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~ 420 (456)
T 4atq_A 345 --HDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRG-AMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILT 420 (456)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEET-TEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEE
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecc-eEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEe
Confidence 11223333333333333330 221100 0 11112223 3322211 1 234556665 5999876
Q ss_pred CC------eEEec-cCChhhHHHHHHHHHHHHHh
Q 012238 439 DG------RISLA-GLSLAKCEYLADAIIDSYHN 465 (467)
Q Consensus 439 gg------Ris~~-~~~~~~i~~~~~~l~~~l~~ 465 (467)
+| ||... .++++++++++++|.++++.
T Consensus 421 ~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 421 CGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 54 55432 24889999999999999875
No 234
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.40 E-value=3.7e-11 Score=120.02 Aligned_cols=160 Identities=12% Similarity=-0.045 Sum_probs=105.7
Q ss_pred cCCchhHHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHHhhCCCCeEEeeee-cCCCCCCChhhHHHHHHcCC-CCc
Q 012238 157 GLSGTGSLRLAAALIERYF----PGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAP-GGS 230 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~----~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~-~~~ 230 (467)
++|+|++..++ ++..+. +++.|+++.-++......+...|+.++.++.. +++.+.+|++.+++++++.+ ..+
T Consensus 122 V~GaT~~~~a~--~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~ 199 (450)
T 3bc8_A 122 VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI 199 (450)
T ss_dssp ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGE
T ss_pred ECCHHHHHHHH--HHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCE
Confidence 68888555554 344444 38999999999999999999999999988542 24467899999999998754 233
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC
Q 012238 231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA 310 (467)
Q Consensus 231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 310 (467)
.+|+.+..+|.+|.+- ++++|+++|++||+++++|+||...... ...-++...+...-..++.|..|++..+
T Consensus 200 ~~Vv~t~t~~g~g~~d---dl~~Ia~ia~~~gi~l~VD~A~G~~~~~----~~~l~~~a~~~~~AD~~v~S~HK~l~a~- 271 (450)
T 3bc8_A 200 LCLHSTTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSSK----CMHLIQQGARVGRIDAFVQSLDKNFMVP- 271 (450)
T ss_dssp EEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHH----HHHHHHHHHHHSCCCEEEEEHHHHHSCC-
T ss_pred EEEEEECCcCCCceec---CHHHHHHHHHHCCCeEEEECCCchhhhh----hHhHHHHHhcccCCCEEEECCccCCCch-
Confidence 4444443444455544 4668888899999999999998754310 0101111222222345789999998754
Q ss_pred CccceEEEecCCHHHHhh
Q 012238 311 ERIGAMNVVCSSSDLAAR 328 (467)
Q Consensus 311 ~RiG~~~~v~~~~~~~~~ 328 (467)
.-.+++. ..+++.++.
T Consensus 272 ~~~~~l~--~rd~~~~~~ 287 (450)
T 3bc8_A 272 VGGAIIA--GFNEPFIQD 287 (450)
T ss_dssp SSCEEEE--ESCHHHHHH
T ss_pred hccEEEE--ecCHHHHHH
Confidence 2233332 357766665
No 235
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.37 E-value=8.1e-12 Score=135.23 Aligned_cols=339 Identities=9% Similarity=0.063 Sum_probs=183.0
Q ss_pred CcEEecCcccCCCCCCCCc-hHHHHHHHHHHHhcCCCCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecCCc
Q 012238 84 KKLNLGVGAYRTEELQPYV-LDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG 160 (467)
Q Consensus 84 ~~i~l~~G~~~d~~~~p~~-~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg 160 (467)
+.||+..|..-..-| +- .|.+.+|+.+.+..-....+. ...-..+|-+.++++.... .-+++++ +++|
T Consensus 381 ~ylD~~sg~~~~~lG--h~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~-----~l~~vff--~~SG 451 (831)
T 4a0g_A 381 QQFDACASWWTQGPD--PTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKG-----WASRVYF--SDNG 451 (831)
T ss_dssp EEEETTHHHHTCCCC--HHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTT-----TCCEEEE--ESSH
T ss_pred heeeecccHhhcCCC--CCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCC-----CCCEEEE--CCCh
Confidence 467777774422222 33 678888888776441111110 1111223444444442110 0257888 9999
Q ss_pred hhHHHHHHHHH-HHh--CCC------------CEEEEcCCCCcch-HHHHhhCCCCe-----------------------
Q 012238 161 TGSLRLAAALI-ERY--FPG------------AKVLISSPTWGNH-KNIFNDARVPW----------------------- 201 (467)
Q Consensus 161 t~al~l~~~~l-~~~--~~g------------d~Vlv~~P~y~~~-~~~~~~~G~~~----------------------- 201 (467)
++|.+.+.++. ..+ ..| .+|+...-+|..- ...+...|...
T Consensus 452 SeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~ 531 (831)
T 4a0g_A 452 STAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVF 531 (831)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEE
T ss_pred hHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCcccc
Confidence 99999986654 212 122 2788888888543 33333333210
Q ss_pred -----EEeeeecCCCCC---------CC------------------hhhHHHHHHc-----CCCCcEEEEeCCC-CCCCC
Q 012238 202 -----SEYRYYDPKTVG---------LD------------------FEGMIADIKA-----APGGSFILLHGCA-HNPTG 243 (467)
Q Consensus 202 -----~~v~~~~~~~~~---------~d------------------~~~l~~~l~~-----~~~~~~~i~i~~p-~NPTG 243 (467)
..++. +..+. -| .+.+++.+++ .+.+..++++-.- ++..|
T Consensus 532 ~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG 609 (831)
T 4a0g_A 532 LSNGSWNISL--PESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGG 609 (831)
T ss_dssp EETTEEEEEC--CTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTT
T ss_pred ccCCceEecC--CccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCC
Confidence 01111 10000 01 1456666652 2345566666553 78888
Q ss_pred CCC-CHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC-CccceEEEecC
Q 012238 244 IDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCS 321 (467)
Q Consensus 244 ~~~-~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~ 321 (467)
... +++.+++|.++|++||+++|+||++.+|...+. .+.. ....-.++++ +++|.++ .| +++|+++ .
T Consensus 610 ~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~---~fa~-e~~gv~PDii---tlsK~L~-gG~~Plgav~---~ 678 (831)
T 4a0g_A 610 MHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV---ETTT-ELLGCKPDIA---CFAKLLT-GGMVPLAVTL---A 678 (831)
T ss_dssp SEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB---SSTH-HHHSSCCSEE---EECGGGG-TTSSCCEEEE---E
T ss_pred CccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC---chhh-HhcCCCCcEE---EEecccc-cCccCcEEEE---E
Confidence 765 788899999999999999999999998854321 1122 1222233433 6899998 57 8999995 7
Q ss_pred CHHHHhhhhhhhHHHHHHHHHhh------ccCccCCCchHHHHHHHHHhC---ChhhHHHHHHHHHHHHHHHHH-HHHHH
Q 012238 322 SSDLAARCCEVAVIQVKSQLKRL------ARPMYSNPPVHGARIVANVVG---NPALFDEWKAEMEMMAGRIKN-VRQKL 391 (467)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~l~~~~~~~~~-~r~~l 391 (467)
++++++. +... ....+.+.+.+++.++...|+ ++.+. +.+.+..+++++ .++.+
T Consensus 679 ~~~i~~~------------~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~----~~~~~~~~~l~~~l~~~l 742 (831)
T 4a0g_A 679 TDAVFDS------------FSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETN----HNITSQGKTLRELWDEEL 742 (831)
T ss_dssp CHHHHHT------------TCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTC----TTBCTTSSBBCCCSCHHH
T ss_pred CHHHHHH------------HhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHH
Confidence 7887776 4321 112233455666666655543 11110 111111111111 01234
Q ss_pred HHHhhhccCCCCCcccccCCcceEEecCC--C-----------HHHHHHHHHcccEEEeCCC---eEEe-ccCChhhHHH
Q 012238 392 FDSLSAKDKSGKDWSFILRQIGMFSFTGL--N-----------KAQSDNMTNKWHVYMTKDG---RISL-AGLSLAKCEY 454 (467)
Q Consensus 392 ~~~l~~~~g~~~~~~~~~~~~g~f~~~~l--~-----------~~~~~~ll~~~gI~v~~gg---Ris~-~~~~~~~i~~ 454 (467)
.+.+. +.+. +..+...|. ++.+.+ + .++.+.+++ +||++.|.| ||+. ...+++++++
T Consensus 743 ~~~l~-~~~~---v~~vrg~Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 743 VQQIS-SHSA---VQRVVVIGT-LFALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPLGNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp HHHHH-HSTT---EEEEEEETT-EEEEEEC---------CHHHHHHHHHHHH-TTEECCCBTTEEEEECCTTCCHHHHHH
T ss_pred HHHHh-hCCC---ceeEeeccc-EEEEEEecCccccccchHHHHHHHHHHHH-CCcEEEecCCEEEEECCCCCCHHHHHH
Confidence 44444 4332 223333443 332222 1 123445554 699999987 6662 2348899999
Q ss_pred HHHHHHHHHHhc
Q 012238 455 LADAIIDSYHNV 466 (467)
Q Consensus 455 ~~~~l~~~l~~~ 466 (467)
++++|.++++++
T Consensus 817 ~~~~l~~~l~~l 828 (831)
T 4a0g_A 817 LLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 236
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.34 E-value=4e-10 Score=114.43 Aligned_cols=345 Identities=12% Similarity=0.073 Sum_probs=187.5
Q ss_pred CCCcEEecCcccCCCCCCCCchHHHHHHHHHHHhcCC-CCcCC--CCcchHHHHHHHHHHHhCCCCcccccCceeeeecC
Q 012238 82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL 158 (467)
Q Consensus 82 ~~~~i~l~~G~~~d~~~~p~~~~~v~~a~~~~~~~~~-~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ 158 (467)
+.+.||+..|.-...-|. -.|.|.+++.+.++... ...+. +..-..+|-+.+++..-. +-++|.+ ++
T Consensus 66 G~~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~------~~~~v~f--~~ 135 (473)
T 4e3q_A 66 GRRYLDANSGLWNMVAGF--DHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPF------DSGRVFY--TN 135 (473)
T ss_dssp CCEEEETTTTTTTCTTCS--CCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSC------SSCEEEE--ES
T ss_pred CCEEEEcccCHHHhhccC--CCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCC------CccEEEE--eC
Confidence 357899988765222233 36788888888775421 11111 111122344444444211 1358888 99
Q ss_pred CchhHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHH-HHhhCCC-----------CeEEeeeec----CCCCCC--
Q 012238 159 SGTGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKN-IFNDARV-----------PWSEYRYYD----PKTVGL-- 214 (467)
Q Consensus 159 ggt~al~l~~~~l~~~-----~~g-d~Vlv~~P~y~~~~~-~~~~~G~-----------~~~~v~~~~----~~~~~~-- 214 (467)
+|++|.+.+.++...+ .++ .+|+...-+|..... .+...|- ....++... ......
T Consensus 136 sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 215 (473)
T 4e3q_A 136 SGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEE 215 (473)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhh
Confidence 9999999986554332 133 478888888865432 2222221 122222100 000001
Q ss_pred -----ChhhHHHHHHcC-CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHH
Q 012238 215 -----DFEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287 (467)
Q Consensus 215 -----d~~~l~~~l~~~-~~~~~~i~i~~p~NPTG~~-~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~ 287 (467)
..+++++.+.+. ++....+++...+.-.|.+ ++++-+++|.++|++||+++|.||+..+|.-.+ ..+..
T Consensus 216 ~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG---~~fa~- 291 (473)
T 4e3q_A 216 QFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG---NTWGC- 291 (473)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS---SSCHH-
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc---chhHH-
Confidence 123445555432 2445566666656666765 456789999999999999999999988884221 12222
Q ss_pred HHHhcCCeEEEEecCccCcccCC-CccceEEEecCCHHHHhhhhhhhHHHHHHHHHhh---ccCccCCCchHHHHHHHHH
Q 012238 288 LFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARCCEVAVIQVKSQLKRL---ARPMYSNPPVHGARIVANV 363 (467)
Q Consensus 288 ~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~ 363 (467)
....-.++++ .++|.++ .| +.+|.++ ..+++.+. +....... ....+.+.++++..++.+.
T Consensus 292 e~~gv~PDi~---t~~K~l~-gG~~Pl~av~---~~~~i~~~--------~~~~~~~~~~~~hg~T~~Gnpla~Aaala~ 356 (473)
T 4e3q_A 292 VTYDFTPDAI---ISSKNLT-AGFFPMGAVI---LGPELSKR--------LETAIEAIEEFPHGFTASGHPVGCAIALKA 356 (473)
T ss_dssp HHTTCCCSEE---EECGGGG-TTSSCCEEEE---ECHHHHHH--------HHHHHHHHSCCCCCCTTTTCHHHHHHHHHH
T ss_pred HhcCCCCChH---Hhccccc-CCCCCccccc---ccHHHHHH--------hccccccccccccCCCCCCCcchhhhhhhh
Confidence 1222334544 3579998 55 8899985 77888776 43322221 1222334555666666555
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCcccccCCcceEEe--c-C------C------CHHHHHH
Q 012238 364 VGNPALFDEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS-GKDWSFILRQIGMFSF--T-G------L------NKAQSDN 427 (467)
Q Consensus 364 L~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~l~~~~g~-~~~~~~~~~~~g~f~~--~-~------l------~~~~~~~ 427 (467)
|+- + ++ +...++.++.-++|.+.|+ ++.- |. +..+...|-++-+ + + . ...+...
T Consensus 357 L~~--i----~~--~~l~~~~~~~g~~l~~~L~-~l~~~~~-v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~ 426 (473)
T 4e3q_A 357 IDV--V----MN--EGLAENVRRLAPRFEERLK-HIAERPN-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANT 426 (473)
T ss_dssp HHH--H----HH--SSHHHHHHHHHHHHHHHHH-HHTTSTT-EEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHH
T ss_pred hhh--h----cc--ccHHHHHHHHHHHHHHHHH-HHhcCCC-eeEEeecceEEEEEEecCccccccccccHHHHHHHHHH
Confidence 431 1 10 1233444445555555555 4321 11 2112222322211 1 0 1 1233455
Q ss_pred HHHcccEEEeCCC---eEEec-cCChhhHHHHHHHHHHHHHhc
Q 012238 428 MTNKWHVYMTKDG---RISLA-GLSLAKCEYLADAIIDSYHNV 466 (467)
Q Consensus 428 ll~~~gI~v~~gg---Ris~~-~~~~~~i~~~~~~l~~~l~~~ 466 (467)
+++ +|+++.+.| ||+-. .++++++++++++|.++++++
T Consensus 427 ~~~-~Gll~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 427 CTD-LGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp HHH-TTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-CCcEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 555 699999987 54422 248899999999999888764
No 237
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=81.72 E-value=8.9 Score=38.70 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=48.1
Q ss_pred hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012238 190 HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF 267 (467)
Q Consensus 190 ~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~ 267 (467)
+.+.+..++.++..+.+.|+.+|.+..+...+.-... ..+ ....+.|-.|+.+|+++|++.|+++|+-||-
T Consensus 204 ~id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~G-a~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP 274 (525)
T 3gh5_A 204 QIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIG-SKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIP 274 (525)
T ss_dssp HHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTT-TSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHcCCcEEEEEeccCCccccccccchhhhhcc-Ccc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3445567788888888776667777766665544321 110 0112346789999999999999999998883
No 238
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=77.86 E-value=13 Score=37.43 Aligned_cols=70 Identities=7% Similarity=-0.040 Sum_probs=46.4
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF 267 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~ 267 (467)
...+..++.++..+.+.|+.+|.+..+...+.-+.. ..+ ......|-.|+.+++++|++.|+++|+-||-
T Consensus 180 id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~g-a~~------~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 180 IDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYG-GST------EVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp HHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTT-TSC------CTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhc-Ccc------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 334456777777777766666777666665543321 111 1112336789999999999999999998883
No 239
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=73.63 E-value=9.9 Score=38.24 Aligned_cols=68 Identities=7% Similarity=0.003 Sum_probs=45.3
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE--Ee
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF--FD 268 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li--~D 268 (467)
.+.+..++.++..+.+.|+.+|.+..+.+.+.-+.. . ..| |..|+.+|+++|++.|+++|+-|| +|
T Consensus 174 id~ma~~KlN~lh~HltDdq~wr~e~~~~P~Lt~~G-a----------~~~-~~~YT~~di~eiv~yA~~rgI~VIPEID 241 (507)
T 1now_A 174 LDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKG-S----------YSL-SHVYTPNDVRMVIEYARLRGIRVLPEFD 241 (507)
T ss_dssp HHHHHHTTCCEEEEECCCSSCCCBCCSSCHHHHHHH-S----------SST-TSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhCCcEEEEeeccCccceeeccchhhhhccc-C----------cCC-CCCCCHHHHHHHHHHHHHcCCEEEEccC
Confidence 334456777777777765556666655554433210 1 012 668999999999999999999888 45
Q ss_pred cc
Q 012238 269 VA 270 (467)
Q Consensus 269 ea 270 (467)
-.
T Consensus 242 ~P 243 (507)
T 1now_A 242 TP 243 (507)
T ss_dssp ES
T ss_pred Cc
Confidence 43
No 240
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=73.09 E-value=32 Score=26.99 Aligned_cols=100 Identities=8% Similarity=0.001 Sum_probs=60.6
Q ss_pred CCchhHHHHHHHHHHHhC---CCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYF---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~---~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~ 234 (467)
..|.+-+.+..-+++.+. .+..|+...|.+..|...+...|++...+=.-...+..-.+..+|++++. +..-.+
T Consensus 11 ~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs---g~~~aV 87 (119)
T 1ofu_X 11 GLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL---GRSHTV 87 (119)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH---TCEEEE
T ss_pred CCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc---CCccEE
Confidence 344454555444555554 45677777888888999999999865544332222222344667777773 444444
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 235 i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
+.-.. -++..+.++|--.+++-+.+.
T Consensus 88 l~wl~-----~l~~~~~RRLqlAA~~g~~~~ 113 (119)
T 1ofu_X 88 VSWLE-----PLSRAARKQLSRAAQLGQAQS 113 (119)
T ss_dssp EECCS-----SCCHHHHHHHHHHHHHHTCEE
T ss_pred EECCC-----cCChHHHHHHHHHHHhCCCeE
Confidence 44322 266888888887777766543
No 241
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=72.46 E-value=11 Score=37.81 Aligned_cols=66 Identities=6% Similarity=0.028 Sum_probs=44.2
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEE
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF 267 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~ 267 (467)
...+..++.++..+.+.|+.+|.+..+.+.+.-+.. . .+|.|..|+.+|+++|++.|+++|+-||-
T Consensus 168 id~mA~~KlN~lh~HltDdq~wr~ei~~~P~Lt~~G-a----------~~~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 168 LDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKG-S----------YNPVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp HHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHH-S----------SCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhCCceEEEEEecccCeeeeccccchhhhcc-c----------cCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 334556777777777766656666554443332210 0 12546689999999999999999998883
No 242
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=67.36 E-value=15 Score=33.54 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=59.1
Q ss_pred CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---C
Q 012238 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---A 226 (467)
Q Consensus 150 ~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~ 226 (467)
+.+++ ..|++.++-.+. ...+...|.+|++..-.-......++..|.+...+..+ .-|.+.+++.+++ .
T Consensus 29 gKval--VTGas~GIG~ai-A~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~D-----v~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 29 AKIAV--ITGATSGIGLAA-AKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQAD-----SANLAELDRLYEKVKAE 100 (273)
T ss_dssp TCEEE--EESCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECC-----TTCHHHHHHHHHHHHHH
T ss_pred CCEEE--EeCcCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEec-----CCCHHHHHHHHHHHHHH
Confidence 34555 456666676651 22345589888887644444455566678888877663 1355555555443 1
Q ss_pred CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 227 PGGSFILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 227 ~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
-.+..+++.+...++.+. .++.++|+++.++-
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vN 134 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRN 134 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHH
Confidence 134556665555444443 35788898887654
No 243
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=60.58 E-value=18 Score=36.66 Aligned_cols=76 Identities=8% Similarity=-0.001 Sum_probs=49.0
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC--CCcEEEE---eCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP--GGSFILL---HGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~--~~~~~i~---i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
.+.+..++.++..+.+.|+.+|.+..+.+.+.-+... ..+.+=- -..-..|.|-.|+.+|+++|++.|+++||-|
T Consensus 161 ID~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~~~~~~~~g~YT~~di~eIv~YA~~rgI~V 240 (543)
T 3rcn_A 161 IEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITV 240 (543)
T ss_dssp HHHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCCBCCCCEECCBCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCcEEEeecccccCcchhcccchhhhhhccccccccccccccccccCCccCCCcCHHHHHHHHHHHHHcCCEE
Confidence 4455677888888887777777777766655433110 0000000 0011235577899999999999999999988
Q ss_pred E
Q 012238 266 F 266 (467)
Q Consensus 266 i 266 (467)
|
T Consensus 241 I 241 (543)
T 3rcn_A 241 I 241 (543)
T ss_dssp E
T ss_pred e
Confidence 8
No 244
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=53.89 E-value=38 Score=36.27 Aligned_cols=121 Identities=8% Similarity=0.037 Sum_probs=68.7
Q ss_pred CcccccCceeeeecCCc-hhHHHHHHHHHHHhCCCC-----EE-EEcCCCCc-------------------chHHHHhhC
Q 012238 144 NSVLKEQRVATVQGLSG-TGSLRLAAALIERYFPGA-----KV-LISSPTWG-------------------NHKNIFNDA 197 (467)
Q Consensus 144 ~~~~~~~~i~~~~t~gg-t~al~l~~~~l~~~~~gd-----~V-lv~~P~y~-------------------~~~~~~~~~ 197 (467)
...++++.|.+ +... .|+++-+..+..++..++ .+ +.-.|.|. .+...+..+
T Consensus 263 ~L~v~~~~i~I--~a~~~~G~fyglqTL~QLl~~~~~~~ip~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~Id~mA~~ 340 (858)
T 1c7s_A 263 ELKIGKKEAQV--IGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAY 340 (858)
T ss_dssp EEEECSSCEEE--EESSHHHHHHHHHHHHHHSCTTSCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCeEEE--EEecccceeHHHHHHHHHhhhcCCccccceEEEeCCCcceeeeeecCCCCCCCHHHHHHHHHHHHHh
Confidence 34566667766 5444 455554444444454332 12 23347664 234455577
Q ss_pred CCCeEEeeeecCCCCCCChhhHHHHHHcCCCC------cEEEE--eCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238 198 RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG------SFILL--HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (467)
Q Consensus 198 G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~------~~~i~--i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li 266 (467)
+.++..+.+.|+.+|.+....+.+.-+....+ ...+. +.+...|.|..|+.+|+++|++.|+++|+-||
T Consensus 341 KlN~lh~HltDdqgwriei~~yP~Lt~~Ga~r~~~~~~~~~~~p~~g~~~~~~~g~YT~~direIv~YA~~rgI~VI 417 (858)
T 1c7s_A 341 KLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVI 417 (858)
T ss_dssp TCCEEEEECEETTEECBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTCCSSCEECCBCHHHHHHHHHHHHTTTCEEE
T ss_pred CCcEEEEEeccCccccccccCCchhhhccccccccccccccccccccCCCCccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 88888877766667777766665543210000 00000 00001144678999999999999999999888
No 245
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=52.88 E-value=61 Score=28.07 Aligned_cols=94 Identities=9% Similarity=-0.003 Sum_probs=52.7
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~ 237 (467)
.||++++-... ...+...|.+|++..-.-.......+..+.++..+..+ --|.+.+++.+++......+++.+.
T Consensus 7 TGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~d~lv~~A 80 (230)
T 3guy_A 7 TGASSGLGAEL-AKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARD-----LASHQEVEQLFEQLDSIPSTVVHSA 80 (230)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECC-----TTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred ecCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeec-----CCCHHHHHHHHHHHhhcCCEEEEeC
Confidence 55566665541 12234578888777654444445555555566665552 2467888888876433334666554
Q ss_pred CCCCCCC--CCCHHHHHHHHHH
Q 012238 238 AHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 238 p~NPTG~--~~~~~~l~~l~~~ 257 (467)
...+.+. ..+.+++++..+.
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~ 102 (230)
T 3guy_A 81 GSGYFGLLQEQDPEQIQTLIEN 102 (230)
T ss_dssp CCCCCSCGGGSCHHHHHHHHHH
T ss_pred CcCCCCccccCCHHHHHHHHHH
Confidence 4433333 3467777776554
No 246
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=50.65 E-value=32 Score=30.46 Aligned_cols=94 Identities=20% Similarity=0.123 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.|+++++-... ...+...|.+|++..-.-.......+..|.++..+..+ --|.+.+++.+++. -.+..+++
T Consensus 12 TGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv 85 (247)
T 3rwb_A 12 TGAAQGIGKAI-AARLAADGATVIVSDINAEGAKAAAASIGKKARAIAAD-----ISDPGSVKALFAEIQALTGGIDILV 85 (247)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCC-----TTCHHHHHHHHHHHHHHHSCCSEEE
T ss_pred ECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcC-----CCCHHHHHHHHHHHHHHCCCCCEEE
Confidence 56666665541 12234578888887654444444555557677666552 13556665555431 12345666
Q ss_pred eCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 235 HGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 235 i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+....+.+. ..+.++|++..+.
T Consensus 86 ~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 86 NNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHH
Confidence 5554444433 3467778777654
No 247
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=49.30 E-value=1.1e+02 Score=25.26 Aligned_cols=99 Identities=8% Similarity=0.005 Sum_probs=59.6
Q ss_pred CchhHHHHHHHHHHHhC---CCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEe
Q 012238 159 SGTGSLRLAAALIERYF---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235 (467)
Q Consensus 159 ggt~al~l~~~~l~~~~---~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i 235 (467)
.+.+.+.+++-+++.+. .+..|+...|-+..|...+...|++...+=+-...+..-.+..+|++++ .+..-.++
T Consensus 54 ~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALr---sG~~~aVl 130 (161)
T 1oft_A 54 LPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALR---LGRSHTVV 130 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHH---TTCEEEEE
T ss_pred CcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHh---cCCccEEE
Confidence 33333444333444443 4556777788788899999999997655433223223344577788887 44544444
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 236 ~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
.-.. .++..+.++|--.+++-+.+.
T Consensus 131 ~Wl~-----~l~~~~~RRLqlAAe~g~~~~ 155 (161)
T 1oft_A 131 SWLE-----PLSRAARKQLSRAAQLGQAQS 155 (161)
T ss_dssp ECCS-----SCCHHHHHHHHHHHHHTTCEE
T ss_pred ECCC-----cCChHHHHHHHHHHHhCCCeE
Confidence 4332 267888888877777665543
No 248
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=47.61 E-value=90 Score=27.95 Aligned_cols=101 Identities=14% Similarity=0.041 Sum_probs=56.2
Q ss_pred CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch---HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc-
Q 012238 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA- 225 (467)
Q Consensus 150 ~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~- 225 (467)
+++++ ..||+.++-.+. ...+...|.+|++..-.-... ...++..|.++..+..+ --|.+.+++.+++
T Consensus 9 gKval--VTGas~GIG~ai-a~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~D-----v~~~~~v~~~~~~~ 80 (255)
T 4g81_D 9 GKTAL--VTGSARGLGFAY-AEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFD-----VTDELAIEAAFSKL 80 (255)
T ss_dssp TCEEE--ETTCSSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCC-----TTCHHHHHHHHHHH
T ss_pred CCEEE--EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEee-----CCCHHHHHHHHHHH
Confidence 34544 456666676651 223445899998865432222 22345567787777663 1345555544433
Q ss_pred --CCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 226 --APGGSFILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 226 --~~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
.-.+..+++.+-..++.+. .++.++|+++.++-
T Consensus 81 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vN 117 (255)
T 4g81_D 81 DAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTN 117 (255)
T ss_dssp HHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHH
Confidence 2234556665554444443 35788888887643
No 249
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=46.24 E-value=53 Score=30.03 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhcCCeeEEec
Q 012238 248 PEQWEKIADVIQEKNHIPFFDV 269 (467)
Q Consensus 248 ~~~l~~l~~~~~~~~~~li~De 269 (467)
.+.++++++.|.++|+.+|+|-
T Consensus 64 ~~~ld~~v~~a~~~Gi~Vild~ 85 (302)
T 1bqc_A 64 PSDVANVISLCKQNRLICMLEV 85 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 4667777777777777777763
No 250
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=46.22 E-value=32 Score=28.51 Aligned_cols=59 Identities=7% Similarity=-0.054 Sum_probs=39.8
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~ 262 (467)
...++..|++++.+... ..++++.+.+.+. ++.++.++.-.. ...+.+.++++.+++.+
T Consensus 39 a~~l~~~G~eVi~lG~~------~p~e~lv~aa~~~--~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 39 ARALRDAGFEVVYTGLR------QTPEQVAMAAVQE--DVDVIGVSILNG-----AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHHTTCEEECCCSB------CCHHHHHHHHHHT--TCSEEEEEESSS-----CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEECCCC------CCHHHHHHHHHhc--CCCEEEEEeech-----hhHHHHHHHHHHHHhcC
Confidence 34567889988877542 5778888888764 344555554332 23678889988888764
No 251
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=45.86 E-value=1.3e+02 Score=28.14 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Dea 270 (467)
....+..|.+. ++.++..-+.-.+.+.+-- .-.++-+ -.||.|...+.+...++++.|+++|+.+++|--
T Consensus 12 ~~~~e~~g~~~-----~~~~G~~~~~~~ilk~~G~--n~vRlri---~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~h 81 (334)
T 1fob_A 12 LLLLEDEGYSY-----KNLNGQTQALETILADAGI--NSIRQRV---WVNPSDGSYDLDYNLELAKRVKAAGMSLYLDLH 81 (334)
T ss_dssp HHHHHHTTCCC-----BCTTSCBCCHHHHHHHHTC--CEEEEEE---CSCCTTCTTCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHcCCEE-----ECCCCCCchHHHHHHHcCC--CEEEEEE---EECCCCCccCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34567778764 1222223343333333321 2223333 267888899999999999999999999999977
Q ss_pred CCCC
Q 012238 271 YQGF 274 (467)
Q Consensus 271 y~~~ 274 (467)
|++.
T Consensus 82 ysd~ 85 (334)
T 1fob_A 82 LSDT 85 (334)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6554
No 252
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=45.32 E-value=45 Score=29.60 Aligned_cols=94 Identities=13% Similarity=-0.041 Sum_probs=43.0
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.||++++-... ...+...|.+|++..-.-.......+..+.++..+..+ --|.+.+++.+++. -.+..+++
T Consensus 13 TGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv 86 (257)
T 3tpc_A 13 TGASSGLGAAV-TRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNAD-----VTNEADATAALAFAKQEFGHVHGLV 86 (257)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEESSCC------------CEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred eCCCCHHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcc-----CCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 56666665541 12234578888876544433444444445566666552 13555665555421 12445666
Q ss_pred eCCCCCCCCC------CCCHHHHHHHHHH
Q 012238 235 HGCAHNPTGI------DPTPEQWEKIADV 257 (467)
Q Consensus 235 i~~p~NPTG~------~~~~~~l~~l~~~ 257 (467)
.+....+.+. ..+.++|++..+.
T Consensus 87 ~nAg~~~~~~~~~~~~~~~~~~~~~~~~v 115 (257)
T 3tpc_A 87 NCAGTAPGEKILGRSGPHALDSFARTVAV 115 (257)
T ss_dssp ECCCCCCCCCSEETTEECCHHHHHHHHHH
T ss_pred ECCCCCCCCccccccccCCHHHHHHHHHH
Confidence 5544433332 2456777776553
No 253
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=45.30 E-value=1.1e+02 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=32.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCC
Q 012238 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF 274 (467)
Q Consensus 238 p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~ 274 (467)
-.||.|-....+++.++++.|+++|+.|++|--|++.
T Consensus 49 w~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~ 85 (332)
T 1hjs_A 49 WVNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDT 85 (332)
T ss_dssp CSSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSS
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence 3788888899999999999999999999999776554
No 254
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=43.11 E-value=54 Score=29.70 Aligned_cols=73 Identities=11% Similarity=0.016 Sum_probs=42.1
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCC
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~ 237 (467)
.||++++-... ...+...|.+|++..-.-.......+..+.++..+..+ --|.+.+++.+++. .+..+++++.
T Consensus 22 TGas~gIG~~~-a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----l~d~~~v~~~~~~~-~~iD~lv~nA 94 (291)
T 3rd5_A 22 TGANSGLGAVT-ARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELD-----LQDLSSVRRFADGV-SGADVLINNA 94 (291)
T ss_dssp ECCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECC-----TTCHHHHHHHHHTC-CCEEEEEECC
T ss_pred eCCCChHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcC-----CCCHHHHHHHHHhc-CCCCEEEECC
Confidence 56666666541 12234578888876544333444455556566666552 24778888888754 3456666443
No 255
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=42.25 E-value=1.7e+02 Score=25.46 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=25.7
Q ss_pred CCCC--CCCCCH---HHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238 239 HNPT--GIDPTP---EQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (467)
Q Consensus 239 ~NPT--G~~~~~---~~l~~l~~~~~~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (467)
-||+ |..+.. +.++++.+...++ ++.+.+|- +.... .+..+.+.+-+.++++|
T Consensus 143 v~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G---GI~~~-------~~~~~~~aGad~vvvGS 202 (230)
T 1tqj_A 143 VNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG---GLKPN-------NTWQVLEAGANAIVAGS 202 (230)
T ss_dssp SCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES---SCCTT-------TTHHHHHHTCCEEEESH
T ss_pred eccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC---CcCHH-------HHHHHHHcCCCEEEECH
Confidence 4666 655554 3344444444332 67787773 23221 23344454556666665
No 256
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=40.82 E-value=38 Score=34.44 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=45.7
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE--Ee
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF--FD 268 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li--~D 268 (467)
.+.+..++.++..+.+.|+.+|.+..+...+.-+. +. ...|..|+.+|+++|++.|+++|+-|| +|
T Consensus 210 id~mA~~KlN~lH~HltDdqgwrlei~~~P~Lt~~---Ga---------~~~~~~YT~~di~eiv~yA~~rgI~VIPEId 277 (572)
T 3ozo_A 210 IEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKF---GA---------LSPQKVYTKAAIREVVRFGLERGVRVLPEFD 277 (572)
T ss_dssp HHHHHHTTCCEEEEECCCSSCCCBCCSSSHHHHHH---HS---------SSSSSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCceEEEEeecCcCceeccccCcchhcc---CC---------cCCCCCcCHHHHHHHHHHHHHhCCceeeeec
Confidence 34455677777777776666676666555543321 00 113568999999999999999999888 45
Q ss_pred cc
Q 012238 269 VA 270 (467)
Q Consensus 269 ea 270 (467)
..
T Consensus 278 ~P 279 (572)
T 3ozo_A 278 AP 279 (572)
T ss_dssp ES
T ss_pred cc
Confidence 44
No 257
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=40.72 E-value=59 Score=29.32 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=51.2
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.|+++++-... ...+...|.+|++..-.-.......+..|.++..+..+ --|.+.+++.+++. -.+..+++
T Consensus 33 TGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lv 106 (277)
T 4dqx_A 33 TGGGSGIGRAT-AELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVD-----VSSAKDAESMVEKTTAKWGRVDVLV 106 (277)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 56666666541 12234578888886644333444445556677766653 13556666555431 12345666
Q ss_pred eCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 235 HGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 235 i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+....+.+. ..+.++|+++.+.
T Consensus 107 ~nAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 4dqx_A 107 NNAGFGTTGNVVTIPEETWDRIMSV 131 (277)
T ss_dssp ECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred ECCCcCCCCCcccCCHHHHHHHHHH
Confidence 5554433332 3567888777553
No 258
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=40.49 E-value=55 Score=29.56 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=50.5
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.||++++-... ...+...|.+|++..-.-.......+..|.++..+..+ --|.+.+++.+++. -.+..+++
T Consensus 35 TGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lv 108 (277)
T 3gvc_A 35 TGAGAGIGLAV-ARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVD-----VSDEQQIIAMVDACVAAFGGVDKLV 108 (277)
T ss_dssp TTTTSTHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECC-----TTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred ECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 55555555431 12234578888876544333444445556666666653 13556655555421 12445666
Q ss_pred eCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 235 HGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 235 i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
.+....+.+. ..+.+++++..+.-
T Consensus 109 nnAg~~~~~~~~~~~~~~~~~~~~vN 134 (277)
T 3gvc_A 109 ANAGVVHLASLIDTTVEDFDRVIAIN 134 (277)
T ss_dssp ECCCCCCCBCTTTCCHHHHHHHHHHH
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHH
Confidence 5544333332 35778888776543
No 259
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=40.10 E-value=1.1e+02 Score=26.94 Aligned_cols=93 Identities=9% Similarity=-0.034 Sum_probs=49.0
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CCCCcE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSF 231 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~~ 231 (467)
.|+++++-.+. ...+...|.+|++..-.-..... .++..|.++..+..+ --|.+.+++.++. . .+..
T Consensus 13 TGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~-g~id 85 (252)
T 3h7a_A 13 IGAGDYIGAEI-AKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLD-----ARNEDEVTAFLNAADAH-APLE 85 (252)
T ss_dssp ECCSSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECC-----TTCHHHHHHHHHHHHHH-SCEE
T ss_pred ECCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECc-----CCCHHHHHHHHHHHHhh-CCce
Confidence 56666665541 12234578888876544333322 334456677766653 1355555555442 2 3456
Q ss_pred EEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 232 ILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 232 ~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
+++.+....+.+. ..+.+++++..+.
T Consensus 86 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 113 (252)
T 3h7a_A 86 VTIFNVGANVNFPILETTDRVFRKVWEM 113 (252)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 6665554443332 3567777776543
No 260
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=39.87 E-value=22 Score=34.97 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=27.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeE--Eecc
Q 012238 239 HNPTGIDPTPEQWEKIADVIQEKNHIPF--FDVA 270 (467)
Q Consensus 239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li--~Dea 270 (467)
++|.|..|+.+++++|++.|+++||-|| +|-.
T Consensus 85 ~~~~~~~YT~~di~eIv~YA~~rgI~VIPEID~P 118 (442)
T 2yl5_A 85 DDPNGTALTQAEVTELIEYAKSKDIGLIPAINSP 118 (442)
T ss_dssp CCTTCSCBCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCeeeeecccc
Confidence 3567889999999999999999999888 4543
No 261
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=38.58 E-value=60 Score=29.08 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=50.2
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---C
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---P 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~ 227 (467)
.+++ .||++++-... ...+...|.+|++..-.-.......+..|.++..+..+ --|.+.+++.+++. .
T Consensus 29 ~vlV---TGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~ 99 (266)
T 3grp_A 29 KALV---TGATGGIGEAI-ARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSAN-----LSDRKSIKQLAEVAEREM 99 (266)
T ss_dssp EEEE---SSTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECC-----TTSHHHHHHHHHHHHHHH
T ss_pred EEEE---eCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEee-----cCCHHHHHHHHHHHHHHc
Confidence 4555 56666666541 12234578888876544344444555567777777653 13556665555421 1
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIAD 256 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~ 256 (467)
.+..+++.+....+.+. ..+.++|++..+
T Consensus 100 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~ 130 (266)
T 3grp_A 100 EGIDILVNNAGITRDGLFVRMQDQDWDDVLA 130 (266)
T ss_dssp TSCCEEEECCCCC-----CCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 24456665444333222 245566666644
No 262
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=38.47 E-value=1.2e+02 Score=26.97 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=49.3
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC--CCCcEEEEe
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLH 235 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~~i~i 235 (467)
.||++++-... ...+...|.+|++..-.-.......+..+.++..+..+ --|.+.+++.++.. ..+..++++
T Consensus 36 TGas~GIG~ai-a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~D-----l~~~~~v~~~~~~~~~~~~id~lv~ 109 (281)
T 3ppi_A 36 SGGAGGLGEAT-VRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTN-----VTSEDSVLAAIEAANQLGRLRYAVV 109 (281)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECC-----TTCHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ECCCChHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcC-----CCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 56666665541 12234578888876544334444555556677776653 13556665555431 124455555
Q ss_pred C-CCCCCCC-------CCCCHHHHHHHHHH
Q 012238 236 G-CAHNPTG-------IDPTPEQWEKIADV 257 (467)
Q Consensus 236 ~-~p~NPTG-------~~~~~~~l~~l~~~ 257 (467)
+ ....+.+ ...+.+++++..+.
T Consensus 110 ~aag~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (281)
T 3ppi_A 110 AHGGFGVAQRIVQRDGSPADMGGFTKTIDL 139 (281)
T ss_dssp CCCCCCCCCCSBCTTSCBCCHHHHHHHHHH
T ss_pred ccCcccccccccccccccCCHHHHHHHHHH
Confidence 4 2222222 24667777776553
No 263
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=38.45 E-value=74 Score=28.46 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=53.6
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---C
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---P 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~ 227 (467)
.+++ .||++++-... ...+...|.+|++..-.-..........+.++..+..+ --|.+.+++.+++. .
T Consensus 7 ~vlV---TGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~~~~~~~~~~~~~ 77 (281)
T 3m1a_A 7 VWLV---TGASSGFGRAI-AEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLD-----VTDGERIDVVAADVLARY 77 (281)
T ss_dssp EEEE---TTTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECC-----TTCHHHHHHHHHHHHHHH
T ss_pred EEEE---ECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEee-----CCCHHHHHHHHHHHHHhC
Confidence 4555 56666666541 12234578888877655555566666666666666652 13556666555421 1
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIAD 256 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~ 256 (467)
.+..+++++....+.+. ..+.+++++..+
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 108 (281)
T 3m1a_A 78 GRVDVLVNNAGRTQVGAFEETTERELRDLFE 108 (281)
T ss_dssp SCCSEEEECCCCEEECCTTTCCHHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 23446665544333332 456777776654
No 264
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=38.26 E-value=1.1e+02 Score=29.07 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=54.8
Q ss_pred cCceeeeecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-
Q 012238 149 EQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA- 226 (467)
Q Consensus 149 ~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 226 (467)
+..++.+....|++=-.++.++...+ ..|..|+..+.........++..|.....+.+..+ .+.+.+.+.++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~----~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQP----DNGEQALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECC----SSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecC----CcHHHHHHHHHHHH
Confidence 45565554666666555554444332 25556665554433333345666765544333222 2445544444320
Q ss_pred -CCCcEEEEeCCCCCCCC-CCCC---------------HHHHHHHHHHHHhcCCeeEE
Q 012238 227 -PGGSFILLHGCAHNPTG-IDPT---------------PEQWEKIADVIQEKNHIPFF 267 (467)
Q Consensus 227 -~~~~~~i~i~~p~NPTG-~~~~---------------~~~l~~l~~~~~~~~~~li~ 267 (467)
.....+|++-+...-.. ..+. .+.+.+|..+++++|+.+|+
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~ 206 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIF 206 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 12344666555544331 1110 12345555667788876654
No 265
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=37.87 E-value=1e+02 Score=31.16 Aligned_cols=79 Identities=10% Similarity=-0.068 Sum_probs=47.4
Q ss_pred CCCCEEEEcCCCCcchH-------HHHhhCCCCeEEeee-ecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q 012238 175 FPGAKVLISSPTWGNHK-------NIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP 246 (467)
Q Consensus 175 ~~gd~Vlv~~P~y~~~~-------~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~ 246 (467)
.+||.|++.....++.. +.+...|++++.-.. .-.-.+--+-++|...++... ++.++..+..
T Consensus 322 ~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~~~--Pk~~ipvHGe------- 392 (555)
T 3zq4_A 322 NPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIK--PKFFMPIHGE------- 392 (555)
T ss_dssp CTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCCCCCSSCCHHHHHHHHHHSC--EEEEEEESBC-------
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcceEEeCCCCHHHHHHHHHHhC--CCEEEEcCCC-------
Confidence 37899999987665543 234567887764000 001133468888888887643 3344433332
Q ss_pred CHHHHHHHHHHHHhcCC
Q 012238 247 TPEQWEKIADVIQEKNH 263 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~ 263 (467)
...+.+.++++++.|+
T Consensus 393 -~~~~~~~~~~a~~~G~ 408 (555)
T 3zq4_A 393 -YRMQKMHVKLATDCGI 408 (555)
T ss_dssp -HHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHcCC
Confidence 5567788888888664
No 266
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=37.03 E-value=40 Score=30.28 Aligned_cols=51 Identities=18% Similarity=0.082 Sum_probs=33.7
Q ss_pred CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012238 211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (467)
Q Consensus 211 ~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Dea 270 (467)
+|.+|.-.+.++.. .... .++++.. .++.++++++++.|++.|+.+++|-.
T Consensus 108 Dfi~~~~qi~ea~~-~GAD-~ilLi~a-------~l~~~~l~~l~~~a~~lGl~~lvEv~ 158 (251)
T 1i4n_A 108 DFYIDTVQVKLASS-VGAD-AILIIAR-------ILTAEQIKEIYEAAEELGMDSLVEVH 158 (251)
T ss_dssp CCCCSTHHHHHHHH-TTCS-EEEEEGG-------GSCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred eCCCCHHHHHHHHH-cCCC-EEEEecc-------cCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 46777777766444 2222 2333222 46678899999999999998888854
No 267
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=36.52 E-value=21 Score=35.01 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=26.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeE--Eecc
Q 012238 239 HNPTGIDPTPEQWEKIADVIQEKNHIPF--FDVA 270 (467)
Q Consensus 239 ~NPTG~~~~~~~l~~l~~~~~~~~~~li--~Dea 270 (467)
++|.|..|+.+++++|++.|+++||-|| +|..
T Consensus 82 ~~~~~~~YT~~di~eIv~YA~~rgI~VIPEID~P 115 (434)
T 2yl6_A 82 NDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSP 115 (434)
T ss_dssp CCTTCSCEEHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 3466789999999999999999999888 4543
No 268
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=35.59 E-value=1.1e+02 Score=27.26 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=50.9
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.||++++-... ...+...|.+|++..-.-.......+..|.++..+..+ --|.+.+++.+++. -.+..+++
T Consensus 17 TGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~lv 90 (271)
T 3tzq_B 17 TGACGGIGLET-SRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVD-----LTNEVSVRALIDFTIDTFGRLDIVD 90 (271)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ECCCcHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECC-----CCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 56666665541 12234578888877655555555555556676666652 13556665555421 12345666
Q ss_pred eCCCCC-C-CCC--CCCHHHHHHHHHH
Q 012238 235 HGCAHN-P-TGI--DPTPEQWEKIADV 257 (467)
Q Consensus 235 i~~p~N-P-TG~--~~~~~~l~~l~~~ 257 (467)
.+.... + .+. ..+.++|++..+.
T Consensus 91 ~nAg~~~~~~~~~~~~~~~~~~~~~~v 117 (271)
T 3tzq_B 91 NNAAHSDPADMLVTQMTVDVWDDTFTV 117 (271)
T ss_dssp ECCCCCCTTCCCGGGCCHHHHHHHHHH
T ss_pred ECCCCCCCCCCccccCCHHHHHHHHHH
Confidence 554433 2 111 3477878777654
No 269
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=35.56 E-value=67 Score=28.44 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=50.8
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CC
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~ 227 (467)
.+++ .|+++++-... ...+...|.+|++..-.-.......+..|.++..+..+ --|.+.+++.++. .-
T Consensus 10 ~~lV---TGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 10 KAIV---IGGTHGMGLAT-VRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSD-----IADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp EEEE---ETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECC-----TTCHHHHHHHHHHHHHHH
T ss_pred EEEE---ECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEcc-----CCCHHHHHHHHHHHHHHh
Confidence 4555 55666665541 12234578888877544333444444456666666653 1355555554432 11
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+..+++.+....+.+. ..+.++|++..+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAV 112 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 34556665443333222 2367777777553
No 270
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=34.92 E-value=27 Score=34.43 Aligned_cols=30 Identities=3% Similarity=0.127 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 246 ~~~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
-+.++++++++.|+++|+-||.|-++-+..
T Consensus 74 Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~ 103 (496)
T 4gqr_A 74 GNEDEFRNMVTRCNNVGVRIYVDAVINHMC 103 (496)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECCSEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccCcCC
Confidence 358999999999999999999999986643
No 271
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=34.49 E-value=98 Score=27.31 Aligned_cols=98 Identities=17% Similarity=0.080 Sum_probs=51.7
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CC
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~ 227 (467)
.+++ .|+++++-... ...+...|.+|++..-.-.......+..+.++..+..+ --|.+.+++.+++ .-
T Consensus 10 ~vlV---TGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 10 SALI---TGSARGIGRAF-AEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMD-----VTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp EEEE---ETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECC-----TTCHHHHHHHHHHHHHHS
T ss_pred EEEE---ECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEee-----CCCHHHHHHHHHHHHHHc
Confidence 4555 56666665541 12334578888876544434444445556566666552 1355666555542 11
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+..+++++....+.+. ..+.++|++..+.
T Consensus 81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 112 (259)
T 4e6p_A 81 GGLDILVNNAALFDLAPIVEITRESYEKLFAI 112 (259)
T ss_dssp SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHH
Confidence 24557775554433322 3467777776553
No 272
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=34.43 E-value=54 Score=26.18 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=38.4
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~ 262 (467)
...++..|++++.+-.. ..++++.++..+. +..++.++.-..++ ....+++++.+++.+
T Consensus 24 ~~~l~~~G~~Vi~lG~~------~p~e~~v~~a~~~--~~d~v~lS~~~~~~-----~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 24 DHAFTNAGFNVVNIGVL------SPQELFIKAAIET--KADAILVSSLYGQG-----EIDCKGLRQKCDEAG 82 (137)
T ss_dssp HHHHHHTTCEEEEEEEE------ECHHHHHHHHHHH--TCSEEEEEECSSTH-----HHHHTTHHHHHHHTT
T ss_pred HHHHHHCCCEEEECCCC------CCHHHHHHHHHhc--CCCEEEEEecCcCc-----HHHHHHHHHHHHhcC
Confidence 35677899999887552 5678887777653 34455555444222 556778888887754
No 273
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=34.12 E-value=27 Score=36.73 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 248 ~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
.++++++++.|+++|+-||.|-+|-+..
T Consensus 254 ~~efk~lV~~~H~~Gi~VilDvV~NH~~ 281 (714)
T 2ya0_A 254 IAEFKNLINEIHKRGMGAILDVVYNHTA 281 (714)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCccc
Confidence 7999999999999999999999987654
No 274
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=33.71 E-value=87 Score=28.39 Aligned_cols=17 Identities=0% Similarity=-0.230 Sum_probs=13.0
Q ss_pred HHHHhhCCCCeEEeeee
Q 012238 191 KNIFNDARVPWSEYRYY 207 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~ 207 (467)
...++..|++.+.+|+.
T Consensus 37 ~~~i~~~G~N~VRi~~~ 53 (294)
T 2whl_A 37 IPAIAEQGANTIRIVLS 53 (294)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHHcCCCEEEEEec
Confidence 34566789999999874
No 275
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=33.70 E-value=58 Score=29.28 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=47.3
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCC------------c---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTW------------G---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y------------~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
.||++++-... ...+...|.+|++..-.. . .....++..|.++..+..+ --|.+.+++.
T Consensus 16 TGas~gIG~~i-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~ 89 (287)
T 3pxx_A 16 TGGARGQGRSH-AVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVD-----VRDRAAVSRE 89 (287)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECC-----TTCHHHHHHH
T ss_pred eCCCChHHHHH-HHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEcc-----CCCHHHHHHH
Confidence 56666665541 123345788887754220 0 1112234456666666653 1355555554
Q ss_pred HHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238 223 IKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (467)
Q Consensus 223 l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~ 256 (467)
+++. -.+..+++++....+.+...+.++|++..+
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~ 126 (287)
T 3pxx_A 90 LANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126 (287)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhh
Confidence 4421 123456665555444444466777777654
No 276
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.98 E-value=1.1e+02 Score=27.38 Aligned_cols=100 Identities=8% Similarity=-0.030 Sum_probs=54.7
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc---hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA- 226 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 226 (467)
.+++ ..||+.++-.+. ...+...|.+|++..-.-.. ....++..|.++..+..+- -|.+.+++.+++.
T Consensus 8 Kval--VTGas~GIG~ai-A~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv-----t~~~~v~~~~~~~~ 79 (254)
T 4fn4_A 8 KVVI--VTGAGSGIGRAI-AKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADV-----SKKKDVEEFVRRTF 79 (254)
T ss_dssp CEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCT-----TSHHHHHHHHHHHH
T ss_pred CEEE--EeCCCCHHHHHH-HHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC-----CCHHHHHHHHHHHH
Confidence 4444 356666666641 12234588888886533222 2233456788888777631 3555555554431
Q ss_pred --CCCcEEEEeCCCC-CCCC--CCCCHHHHHHHHHHH
Q 012238 227 --PGGSFILLHGCAH-NPTG--IDPTPEQWEKIADVI 258 (467)
Q Consensus 227 --~~~~~~i~i~~p~-NPTG--~~~~~~~l~~l~~~~ 258 (467)
-.+..+++.+-.- .+.+ ..++.++|+++.++-
T Consensus 80 ~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vN 116 (254)
T 4fn4_A 80 ETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVN 116 (254)
T ss_dssp HHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHH
T ss_pred HHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHH
Confidence 1344566644432 2333 246889999887654
No 277
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=32.86 E-value=95 Score=23.02 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=46.3
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCC
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG 229 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 229 (467)
+|++ +.+|.-+..++. .+...| .+|.+.+..-.... .+...|......+. .|.+.+.+.+. +
T Consensus 7 ~v~I--~G~G~iG~~~~~---~l~~~g~~~v~~~~r~~~~~~-~~~~~~~~~~~~d~-------~~~~~~~~~~~----~ 69 (118)
T 3ic5_A 7 NICV--VGAGKIGQMIAA---LLKTSSNYSVTVADHDLAALA-VLNRMGVATKQVDA-------KDEAGLAKALG----G 69 (118)
T ss_dssp EEEE--ECCSHHHHHHHH---HHHHCSSEEEEEEESCHHHHH-HHHTTTCEEEECCT-------TCHHHHHHHTT----T
T ss_pred eEEE--ECCCHHHHHHHH---HHHhCCCceEEEEeCCHHHHH-HHHhCCCcEEEecC-------CCHHHHHHHHc----C
Confidence 5666 443444444432 223356 56766655432222 22334544433322 35677777765 3
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (467)
Q Consensus 230 ~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li 266 (467)
..+++.+.|.. .-..+++.|.+.|+..+
T Consensus 70 ~d~vi~~~~~~---------~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 70 FDAVISAAPFF---------LTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp CSEEEECSCGG---------GHHHHHHHHHHTTCEEE
T ss_pred CCEEEECCCch---------hhHHHHHHHHHhCCCEE
Confidence 34666554321 23577888888887654
No 278
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=32.55 E-value=1.5e+02 Score=25.87 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=49.0
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---C
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---P 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~ 227 (467)
.+++ .|+++++-... ...+...|.+|++..-.-.......+..+.++..+..+ --|.+.+++.+++. -
T Consensus 14 ~vlV---TGasggiG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~ 84 (265)
T 2o23_A 14 VAVI---TGGASGLGLAT-AERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPAD-----VTSEKDVQTALALAKGKF 84 (265)
T ss_dssp EEEE---ETTTSHHHHHH-HHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECC-----TTCHHHHHHHHHHHHHHH
T ss_pred EEEE---ECCCChHHHHH-HHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcC-----CCCHHHHHHHHHHHHHHC
Confidence 4555 56666665541 12234478887776543333444444446666666552 13556666655421 1
Q ss_pred CCcEEEEeCCCCCCCCC--------CCCHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPTGI--------DPTPEQWEKIAD 256 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~--------~~~~~~l~~l~~ 256 (467)
.+..+++++......+. ..+.+++++..+
T Consensus 85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
T 2o23_A 85 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLD 121 (265)
T ss_dssp SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHH
T ss_pred CCCCEEEECCccCCCCccccccccCCCCHHHHHHHHH
Confidence 23446665543332222 146676766644
No 279
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=32.41 E-value=1.6e+02 Score=25.45 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=50.4
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch---HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc--
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA-- 225 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~-- 225 (467)
.+++ .|+++++-... ...+...|.+|++..-.-... ...++..|.++..+..+ --|.+.+++.+++
T Consensus 7 ~vlI---TGas~gIG~~~-a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 7 VALV---TGASRGIGFEV-AHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLN-----ISDIESIQNFFAEIK 77 (247)
T ss_dssp EEEE---SSCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECC-----TTCHHHHHHHHHHHH
T ss_pred EEEE---ECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEec-----CCCHHHHHHHHHHHH
Confidence 4555 56666665541 122344788887765433222 22334557777776653 1355555555443
Q ss_pred -CCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 226 -APGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 226 -~~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
...+..+++++....+.+. ..+.+++++..+.
T Consensus 78 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~ 112 (247)
T 3lyl_A 78 AENLAIDILVNNAGITRDNLMMRMSEDEWQSVINT 112 (247)
T ss_dssp HTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 2234456665544333332 3467777766543
No 280
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=32.19 E-value=71 Score=28.45 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=45.8
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CC
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~ 227 (467)
.+++ .||++++-... ...+...|.+|++..-.-......++..++..+..++ -|.+.+++.+++ .-
T Consensus 29 ~vlV---TGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~~ 97 (260)
T 3gem_A 29 PILI---TGASQRVGLHC-ALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDF-------SCETGIMAFIDLLKTQT 97 (260)
T ss_dssp CEEE---SSTTSHHHHHH-HHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCT-------TSHHHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCHHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCC-------CCHHHHHHHHHHHHHhc
Confidence 4555 56666666541 1223447877777654333334444445544333333 355555555442 11
Q ss_pred CCcEEEEeCCCCCCC-CCCCCHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPT-GIDPTPEQWEKIAD 256 (467)
Q Consensus 228 ~~~~~i~i~~p~NPT-G~~~~~~~l~~l~~ 256 (467)
.+..+++.+...... ....+.++|++..+
T Consensus 98 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~ 127 (260)
T 3gem_A 98 SSLRAVVHNASEWLAETPGEEADNFTRMFS 127 (260)
T ss_dssp SCCSEEEECCCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEECCCccCCCCCCCCHHHHHHHHH
Confidence 234466655432222 23345566666654
No 281
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=32.15 E-value=2.5e+02 Score=24.98 Aligned_cols=97 Identities=13% Similarity=-0.026 Sum_probs=47.3
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcch---HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEE
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i 233 (467)
..||++++-.+. ...+...|.+|++..-.-... ...++..|.++..+..+-. ..-+.+.+.+.+.+. .+..++
T Consensus 38 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~--~~~~~~~~~~~~~~~-g~iD~l 113 (275)
T 4imr_A 38 VTGSSRGIGAAI-AEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLS--EAGAGTDLIERAEAI-APVDIL 113 (275)
T ss_dssp ETTCSSHHHHHH-HHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTT--STTHHHHHHHHHHHH-SCCCEE
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCC--CHHHHHHHHHHHHHh-CCCCEE
Confidence 356666666541 122345788887765332222 2333445777777765311 112333333333322 344566
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 234 ~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
+.+....+.+. ..+.++|++..+.
T Consensus 114 vnnAg~~~~~~~~~~~~~~~~~~~~v 139 (275)
T 4imr_A 114 VINASAQINATLSALTPNDLAFQLAV 139 (275)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 65544333222 3467777777553
No 282
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=31.76 E-value=2e+02 Score=26.25 Aligned_cols=71 Identities=8% Similarity=0.004 Sum_probs=39.7
Q ss_pred CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE-EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 012238 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF-ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHI 264 (467)
Q Consensus 186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~-~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~ 264 (467)
+|....++.+....++..+-+. + ..-.+.+++.++ .+.+ ++++ .+|. +.++.+++.+.++++++.
T Consensus 58 vy~sl~el~~~~~~Dv~ii~vp-~---~~~~~~v~ea~~---~Gi~~vVi~-----t~G~--~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 58 VFDTVKEAVKETDANASVIFVP-A---PFAKDAVFEAID---AGIELIVVI-----TEHI--PVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp EESSHHHHHHHHCCCEEEECCC-H---HHHHHHHHHHHH---TTCSEEEEC-----CSCC--CHHHHHHHHHHHHHHTCE
T ss_pred eeCCHHHHhhcCCCCEEEEccC-H---HHHHHHHHHHHH---CCCCEEEEE-----CCCC--CHHHHHHHHHHHHHcCCE
Confidence 3444455554324444433221 1 123455666665 3344 4432 2343 567788999999999998
Q ss_pred eEEecc
Q 012238 265 PFFDVA 270 (467)
Q Consensus 265 li~Dea 270 (467)
++-..+
T Consensus 124 viGPNc 129 (294)
T 2yv1_A 124 IIGPNT 129 (294)
T ss_dssp EECSSC
T ss_pred EEcCCC
Confidence 886765
No 283
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=31.59 E-value=1.2e+02 Score=27.23 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=49.9
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEE
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFIL 233 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i 233 (467)
..||++++-... ...+...|.+|++..-.-.......+..+.++..+..+ --|.+.+++.+++. -.+..++
T Consensus 33 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~l 106 (272)
T 4dyv_A 33 VTGAGSGVGRAV-AVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTD-----VTDPDSVRALFTATVEKFGRVDVL 106 (272)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECC-----TTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEE
Confidence 366777666541 12234578888876544334444455555566666552 13556665555421 1244566
Q ss_pred EeCCCCCCC-CC--CCCHHHHHHHHHH
Q 012238 234 LHGCAHNPT-GI--DPTPEQWEKIADV 257 (467)
Q Consensus 234 ~i~~p~NPT-G~--~~~~~~l~~l~~~ 257 (467)
+.+...... +. ..+.++|++..+.
T Consensus 107 VnnAg~~~~~~~~~~~~~~~~~~~~~v 133 (272)
T 4dyv_A 107 FNNAGTGAPAIPMEDLTFAQWKQVVDT 133 (272)
T ss_dssp EECCCCCCCSSCGGGCCHHHHHHHHHH
T ss_pred EECCCCCCCCCChhhCCHHHHHHHHHh
Confidence 654433221 21 3567777776553
No 284
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=31.02 E-value=2.7e+02 Score=24.43 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc-----CCeeEEeccCCCCCCCCCCCChhHHHHHHh--cCCeEEEEec
Q 012238 237 CAHNPTGIDPTPEQWEKIADVIQEK-----NHIPFFDVAYQGFASGSLDNDASSVRLFAT--RGMELLVAQS 301 (467)
Q Consensus 237 ~p~NPTG~~~~~~~l~~l~~~~~~~-----~~~li~Deay~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S 301 (467)
+|-.. |..+.+..+++|.++.+.. ++.|.+|.= . ....+..+.+ .+-++++++|
T Consensus 158 ~pgfg-gq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGG---I-------~~~~~~~~~~~~aGad~~VvGS 218 (237)
T 3cu2_A 158 DPRNG-TKYPSELILDRVIQVEKRLGNRRVEKLINIDGS---M-------TLELAKYFKQGTHQIDWLVSGS 218 (237)
T ss_dssp ETTTT-EECCHHHHHHHHHHHHHHHGGGGGGCEEEEESS---C-------CHHHHHHHHHSSSCCCCEEECG
T ss_pred ccCcC-CeecChhHHHHHHHHHHHHHhcCCCceEEEECC---c-------CHHHHHHHHHhCCCCcEEEEee
Confidence 34444 4445544455444444332 577777732 2 2335556666 6667777775
No 285
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=30.95 E-value=1.4e+02 Score=26.52 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=49.9
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CCCCc
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGS 230 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~ 230 (467)
..||++++-... ...+...|.+|++..-.-..... .++..|.++..+..+ --|.+.+++.+++ ...+.
T Consensus 31 VTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~i 104 (271)
T 4ibo_A 31 VTGSSRGLGRAM-AEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFD-----VTSESEIIEAFARLDEQGIDV 104 (271)
T ss_dssp ETTCSSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCC-----TTCHHHHHHHHHHHHHHTCCC
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC-----CCCHHHHHHHHHHHHHHCCCC
Confidence 356666666541 12334578888887644332222 233456666666552 1355666555543 11244
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++.+....+.+. ..+.++|++..+.
T Consensus 105 D~lv~nAg~~~~~~~~~~~~~~~~~~~~v 133 (271)
T 4ibo_A 105 DILVNNAGIQFRKPMIELETADWQRVIDT 133 (271)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCchhCCHHHHHHHHHH
Confidence 56665544333332 3477778777553
No 286
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=30.74 E-value=1.1e+02 Score=26.90 Aligned_cols=98 Identities=15% Similarity=0.040 Sum_probs=50.3
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---C
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---P 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~ 227 (467)
.+++ .|+++++-... ...+...|.+|++..-.-.......+..+.++..+..+- -|.+.+++.+++. .
T Consensus 11 ~vlI---TGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~~~ 81 (261)
T 3n74_A 11 VALI---TGAGSGFGEGM-AKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADI-----SKEADVDAAVEAALSKF 81 (261)
T ss_dssp EEEE---ETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCT-----TSHHHHHHHHHHHHHHH
T ss_pred EEEE---ECCCchHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecC-----CCHHHHHHHHHHHHHhc
Confidence 4555 55556555431 123345788888776444444445555566777766531 3555555555421 1
Q ss_pred CCcEEEEeCCCCCC-CCC--CCCHHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNP-TGI--DPTPEQWEKIADV 257 (467)
Q Consensus 228 ~~~~~i~i~~p~NP-TG~--~~~~~~l~~l~~~ 257 (467)
.+..+++++..... .+. ..+.+++++..+.
T Consensus 82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~ 114 (261)
T 3n74_A 82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGV 114 (261)
T ss_dssp SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHH
T ss_pred CCCCEEEECCccCCCCCCcccCCHHHHHHHHHH
Confidence 23446665443221 221 2367777776543
No 287
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=30.34 E-value=1.5e+02 Score=25.86 Aligned_cols=94 Identities=17% Similarity=0.066 Sum_probs=47.2
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFIL 233 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i 233 (467)
.|+++++-... ...+...|.+|++..-.- ......++..|.++..+..+ --|.+.+++.+++. -.+..++
T Consensus 13 TGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~id~l 86 (249)
T 2ew8_A 13 TGGANGIGRAI-AERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCD-----VSQPGDVEAFGKQVISTFGRCDIL 86 (249)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred eCCCcHHHHHH-HHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEee-----cCCHHHHHHHHHHHHHHcCCCCEE
Confidence 56666665541 122344788887754322 22222344556666666652 13556665554321 1234566
Q ss_pred EeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 234 LHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 234 ~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
+.+....+.+. ..+.+++++..+.
T Consensus 87 v~nAg~~~~~~~~~~~~~~~~~~~~~ 112 (249)
T 2ew8_A 87 VNNAGIYPLIPFDELTFEQWKKTFEI 112 (249)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHH
Confidence 65544333332 2467777776543
No 288
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=30.01 E-value=45 Score=32.53 Aligned_cols=30 Identities=3% Similarity=0.184 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 68 t~~df~~lv~~aH~~Gi~VilD~V~NH~~~ 97 (441)
T 1lwj_A 68 SEREFKEMIEAFHDSGIKVVLDLPIHHTGF 97 (441)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTTBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCcccC
Confidence 489999999999999999999999877664
No 289
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=29.71 E-value=70 Score=27.90 Aligned_cols=95 Identities=16% Similarity=-0.007 Sum_probs=45.8
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.||++++-... ...+...|.+|++..-.-.......+..+..+..+..+ --|.+.+++.+++. ..+..+++
T Consensus 9 TGas~GIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~id~lv 82 (235)
T 3l6e_A 9 TGAGSGLGRAL-TIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVAD-----LAHHEDVDVAFAAAVEWGGLPELVL 82 (235)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECC-----TTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred ECCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECC-----CCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 56666666541 12234478888876544333333333333345555542 13555555554421 12334666
Q ss_pred eCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 235 HGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 235 i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
.+....+.+. ..+.++|++..+.-
T Consensus 83 nnAg~~~~~~~~~~~~~~~~~~~~~N 108 (235)
T 3l6e_A 83 HCAGTGEFGPVGVYTAEQIRRVMESN 108 (235)
T ss_dssp EECCCC------CCCHHHHHHHHHHH
T ss_pred ECCCCCCCCChHhCCHHHHHHHHHHH
Confidence 5444333222 34677777776543
No 290
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=29.53 E-value=1.7e+02 Score=23.72 Aligned_cols=60 Identities=13% Similarity=-0.000 Sum_probs=38.9
Q ss_pred CCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHH-HHHHhcCCe-eEEeccCCC
Q 012238 212 VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPE-QWEKIA-DVIQEKNHI-PFFDVAYQG 273 (467)
Q Consensus 212 ~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~-~l~~l~-~~~~~~~~~-li~Deay~~ 273 (467)
...+.+.|.+.+++ .+...+++..|-|..|+.-... +.+.++ .+.++.++. .++||.|..
T Consensus 40 ~~~~~~~l~~li~~--~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts 102 (150)
T 1vhx_A 40 GDYGLSRLSELIKD--YTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTT 102 (150)
T ss_dssp TBCCHHHHHHHHTT--SEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCH
T ss_pred hHHHHHHHHHHHHH--cCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCH
Confidence 44678999999986 4667888888877777653222 224555 334445765 457998653
No 291
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=29.45 E-value=2.2e+02 Score=22.75 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=47.4
Q ss_pred CCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 012238 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA 255 (467)
Q Consensus 176 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~ 255 (467)
-|=+++....+ ...++..|+++..+.-..+.+..-+...+.+.++. .+..+|+ +.| ++..-+..+-..|.
T Consensus 49 lGf~i~AT~GT----a~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~--g~i~lVI-nt~---~~~~~~~~d~~~iR 118 (143)
T 2yvq_A 49 EGFKLFATEAT----SDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRD--GSIDLVI-NLP---NNNTKFVHDNYVIR 118 (143)
T ss_dssp TTCEEEEEHHH----HHHHHHTTCCCEEECCGGGC-----CBCHHHHHHT--TSCCEEE-ECC---CCCGGGHHHHHHHH
T ss_pred CCCEEEECchH----HHHHHHcCCeEEEEEeccCCCcccccccHHHHHHC--CCceEEE-ECC---CCCCcCCccHHHHH
Confidence 46566655433 34567789998887532221000011246666774 3334444 433 34333467788899
Q ss_pred HHHHhcCCeeEEe
Q 012238 256 DVIQEKNHIPFFD 268 (467)
Q Consensus 256 ~~~~~~~~~li~D 268 (467)
+.|-+|+++++..
T Consensus 119 R~Av~~~IP~~T~ 131 (143)
T 2yvq_A 119 RTAVDSGIPLLTN 131 (143)
T ss_dssp HHHHHTTCCEECS
T ss_pred HHHHHhCCCeEcC
Confidence 9999999988743
No 292
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=29.24 E-value=1e+02 Score=27.44 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=50.2
Q ss_pred cCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCc----chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHH
Q 012238 149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG----NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224 (467)
Q Consensus 149 ~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~----~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~ 224 (467)
...+++ .||++++-... ...+...|.+|++..-.-. .....++..|.++..+..+- -|.+.+++.++
T Consensus 29 ~k~vlI---TGas~gIG~~l-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~v~~~~~ 99 (271)
T 4iin_A 29 GKNVLI---TGASKGIGAEI-AKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDA-----ASESDFIEAIQ 99 (271)
T ss_dssp CCEEEE---TTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCT-----TCHHHHHHHHH
T ss_pred CCEEEE---ECCCcHHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCC-----CCHHHHHHHHH
Confidence 345555 56666665541 1223457888876543221 12233455677777776631 35555555554
Q ss_pred cC---CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 012238 225 AA---PGGSFILLHGCAHNPTGI--DPTPEQWEKIAD 256 (467)
Q Consensus 225 ~~---~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~ 256 (467)
+. ..+..+++.+....+.+. ..+.+++++..+
T Consensus 100 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~ 136 (271)
T 4iin_A 100 TIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVID 136 (271)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred HHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHH
Confidence 21 124456665544333322 346677776654
No 293
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=29.17 E-value=48 Score=31.94 Aligned_cols=30 Identities=7% Similarity=0.137 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 67 t~~d~~~lv~~~h~~Gi~VilD~V~NH~~~ 96 (405)
T 1ht6_A 67 NAAELKSLIGALHGKGVQAIADIVINHRCA 96 (405)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCcccC
Confidence 489999999999999999999999876654
No 294
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=29.14 E-value=88 Score=29.61 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=56.5
Q ss_pred cCceeeeecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-
Q 012238 149 EQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA- 226 (467)
Q Consensus 149 ~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 226 (467)
+.+++++....|++=-.++.++...+ ..|.+|+..+.....-...++..|.....+.+.++ .+.+.+.+.++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~----~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP----DTGEQALEICDALA 137 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECC----SSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCC----CCHHHHHHHHHHHH
Confidence 55666655667766555554444332 35666666554333223345667776544433222 1334444433210
Q ss_pred -CCCcEEEEeCCCCCCCC------CCCC----------HHHHHHHHHHHHhcCCeeEE
Q 012238 227 -PGGSFILLHGCAHNPTG------IDPT----------PEQWEKIADVIQEKNHIPFF 267 (467)
Q Consensus 227 -~~~~~~i~i~~p~NPTG------~~~~----------~~~l~~l~~~~~~~~~~li~ 267 (467)
..+..++++-+...-.. ..-+ .+.+.+|..+++++|+.+|+
T Consensus 138 ~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~ 195 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 195 (356)
T ss_dssp HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 12344666655443221 0000 12356677778899987664
No 295
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=28.73 E-value=37 Score=33.28 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 63 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~ 92 (448)
T 1g94_A 63 NRAQFIDMVNRCSAAGVDIYVDTLINHMAA 92 (448)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECSEECS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeeccccC
Confidence 489999999999999999999999876554
No 296
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=28.37 E-value=2e+02 Score=25.98 Aligned_cols=95 Identities=16% Similarity=0.064 Sum_probs=49.1
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH---hhCC-CCeEEeeeecCCCCCCChhhHHHHHHcC---CCC
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---NDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAA---PGG 229 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~---~~~G-~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~ 229 (467)
..||++++-... ...+...|.+|++..-.-....... +..| .++..+..+ --|.+.+++.+++. -.+
T Consensus 46 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~ 119 (293)
T 3rih_A 46 VTGGTKGIGRGI-ATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLD-----VSDPGSCADAARTVVDAFGA 119 (293)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECC-----TTCHHHHHHHHHHHHHHHSC
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEe-----CCCHHHHHHHHHHHHHHcCC
Confidence 366666666541 1223457888887664443333332 2333 355555552 13555555554421 123
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 230 ~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
..+++.+....+.+. ..+.++|++..+.
T Consensus 120 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 149 (293)
T 3rih_A 120 LDVVCANAGIFPEARLDTMTPEQLSEVLDV 149 (293)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 456665554444333 4577888877654
No 297
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=28.35 E-value=71 Score=27.46 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=39.2
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~ 262 (467)
...++..|++++.+.. ...++.+.+.+.+. ++.++.++.-..+ +...++++++.+++.+
T Consensus 109 a~~l~~~G~~v~~LG~------~vp~~~l~~~~~~~--~~d~v~lS~~~~~-----~~~~~~~~i~~l~~~~ 167 (210)
T 1y80_A 109 AMMLESGGFTVYNLGV------DIEPGKFVEAVKKY--QPDIVGMSALLTT-----TMMNMKSTIDALIAAG 167 (210)
T ss_dssp HHHHHHTTCEEEECCS------SBCHHHHHHHHHHH--CCSEEEEECCSGG-----GTHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEECCC------CCCHHHHHHHHHHc--CCCEEEEeccccc-----cHHHHHHHHHHHHhcC
Confidence 4466788998887654 26778888888753 3345555543322 2567888888888765
No 298
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=28.30 E-value=99 Score=27.13 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.|+++++-... ...+...|.+|++..-.-.......+..+.+...+..+ --|.+.+++.+++. -.+..+++
T Consensus 15 TGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~iD~lv 88 (248)
T 3op4_A 15 TGASRGIGKAI-AELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALN-----VTNPESIEAVLKAITDEFGGVDILV 88 (248)
T ss_dssp SSCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECC-----TTCHHHHHHHHHHHHHHHCCCSEEE
T ss_pred eCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEe-----CCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 56666665541 12334578888876543333333333334444445442 13556665555431 12344666
Q ss_pred eCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 235 HGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 235 i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+....+.+. ..+.++|++..+.
T Consensus 89 ~nAg~~~~~~~~~~~~~~~~~~~~v 113 (248)
T 3op4_A 89 NNAGITRDNLLMRMKEEEWSDIMET 113 (248)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 5544333332 3467777776553
No 299
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=27.95 E-value=1.7e+02 Score=27.30 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=44.5
Q ss_pred CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
.|..+..++..-..+++.+-+. . ..-.+...++++ .+..+++ ..|- ..+.++.++|.+.|+++|+.+
T Consensus 55 ~~~~~~~ll~~~~vD~V~i~tp-~---~~H~~~~~~al~---aGkhV~~----EKPl--a~~~~e~~~l~~~a~~~g~~~ 121 (352)
T 3kux_A 55 VVSDPQMLFNDPSIDLIVIPTP-N---DTHFPLAQSALA---AGKHVVV----DKPF--TVTLSQANALKEHADDAGLLL 121 (352)
T ss_dssp EESCHHHHHHCSSCCEEEECSC-T---TTHHHHHHHHHH---TTCEEEE----CSSC--CSCHHHHHHHHHHHHHTTCCE
T ss_pred eECCHHHHhcCCCCCEEEEeCC-h---HHHHHHHHHHHH---CCCcEEE----ECCC--cCCHHHHHHHHHHHHHcCCeE
Confidence 4566777776666777776552 1 133555666666 3444544 4553 345888888999999888887
Q ss_pred EEe
Q 012238 266 FFD 268 (467)
Q Consensus 266 i~D 268 (467)
.+-
T Consensus 122 ~v~ 124 (352)
T 3kux_A 122 SVF 124 (352)
T ss_dssp EEC
T ss_pred EEE
Confidence 764
No 300
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=27.77 E-value=1.2e+02 Score=26.62 Aligned_cols=95 Identities=16% Similarity=0.014 Sum_probs=49.4
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
..|+++++-... ...+...|.+|++..-.-.... ..++..|.++..+..+ --|.+.+++.+++. -.+.
T Consensus 17 VTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~i 90 (256)
T 3gaf_A 17 VTGAAAGIGRAI-AGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECN-----VTDEQHREAVIKAALDQFGKI 90 (256)
T ss_dssp ECSCSSHHHHHH-HHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 356666665541 1223446888877654332222 2334557777777653 13556655555421 1244
Q ss_pred EEEEeCCCCCCC-CCCCCHHHHHHHHHH
Q 012238 231 FILLHGCAHNPT-GIDPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~NPT-G~~~~~~~l~~l~~~ 257 (467)
.+++++....+. ....+.++|++..+.
T Consensus 91 d~lv~nAg~~~~~~~~~~~~~~~~~~~v 118 (256)
T 3gaf_A 91 TVLVNNAGGGGPKPFDMPMSDFEWAFKL 118 (256)
T ss_dssp CEEEECCCCCCCCCTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHH
Confidence 566655443322 225677888777553
No 301
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=27.70 E-value=83 Score=28.73 Aligned_cols=71 Identities=8% Similarity=-0.002 Sum_probs=40.1
Q ss_pred CcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (467)
Q Consensus 187 y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li 266 (467)
|..+.++.+....++..+-+. . ..-.+.+++.++. +..++++-+. | ++.++.+++.+.++++|+.++
T Consensus 53 y~sl~el~~~~~~D~viI~tP-~---~~~~~~~~ea~~~---Gi~~iVi~t~----G--~~~~~~~~l~~~A~~~gv~li 119 (288)
T 2nu8_A 53 FNTVREAVAATGATASVIYVP-A---PFCKDSILEAIDA---GIKLIITITE----G--IPTLDMLTVKVKLDEAGVRMI 119 (288)
T ss_dssp ESSHHHHHHHHCCCEEEECCC-G---GGHHHHHHHHHHT---TCSEEEECCC----C--CCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCHHHHhhcCCCCEEEEecC-H---HHHHHHHHHHHHC---CCCEEEEECC----C--CCHHHHHHHHHHHHHcCCEEE
Confidence 444455554334455444331 1 1345666666663 3333332222 4 357788899999999999887
Q ss_pred Eecc
Q 012238 267 FDVA 270 (467)
Q Consensus 267 ~Dea 270 (467)
-..+
T Consensus 120 GPNc 123 (288)
T 2nu8_A 120 GPNT 123 (288)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 6655
No 302
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=27.69 E-value=1.7e+02 Score=25.62 Aligned_cols=97 Identities=13% Similarity=0.011 Sum_probs=48.5
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---C
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---P 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~ 227 (467)
.+++ .|+++++-... ...+...|.+|++..-.-.......+..|.++..+..+ --|.+.+++.++.. .
T Consensus 8 ~vlV---TGas~giG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 8 VALV---TGGASGVGLEV-VKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHD-----VSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp EEEE---TTTTSHHHHHH-HHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCC-----TTCHHHHHHHHHHHHHHH
T ss_pred EEEE---eCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEcc-----CCCHHHHHHHHHHHHHHc
Confidence 4554 56666666541 12234478888876543332333333335566655542 13556665555431 1
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIAD 256 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~ 256 (467)
.+..+++.+....+.+. ..+.+++++..+
T Consensus 79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 1hxh_A 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLK 109 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 23456665544333222 346677776654
No 303
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=27.57 E-value=39 Score=37.11 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 248 ~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
.++++++++.|+++|+-||.|-+|-+..
T Consensus 561 ~~efk~lV~~~H~~GI~VIlDvV~NHt~ 588 (1014)
T 2ya1_A 561 IAEFKNLINEIHKRGMGAILDVVYNHTA 588 (1014)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccc
Confidence 7999999999999999999999987654
No 304
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=27.43 E-value=1.4e+02 Score=26.38 Aligned_cols=132 Identities=12% Similarity=0.030 Sum_probs=68.8
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCc
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS 230 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 230 (467)
++++ ..|++.++-.+. ...+...|.+|++..-.-.. .....+.++..+..+ .-|.+.+++.+++. .+.
T Consensus 12 K~al--VTGas~GIG~ai-a~~la~~Ga~Vv~~~~~~~~---~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~-g~i 79 (242)
T 4b79_A 12 QQVL--VTGGSSGIGAAI-AMQFAELGAEVVALGLDADG---VHAPRHPRIRREELD-----ITDSQRLQRLFEAL-PRL 79 (242)
T ss_dssp CEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESSTTS---TTSCCCTTEEEEECC-----TTCHHHHHHHHHHC-SCC
T ss_pred CEEE--EeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHH---HhhhhcCCeEEEEec-----CCCHHHHHHHHHhc-CCC
Confidence 4444 356666666641 12344588888876532211 112334456665552 24677788877765 344
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEecCccCcccCC
Q 012238 231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA 310 (467)
Q Consensus 231 ~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 310 (467)
.+++.|-.-+.....++.++|+++.++--+ +.+++. ....+.+.+.+.++|.+.|.+-..+.+|
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~-g~~~~~---------------~~~~p~m~~~~G~IVnisS~~~~~~~~~ 143 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLS-AAMLAS---------------QLARPLLAQRGGSILNIASMYSTFGSAD 143 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTH-HHHHHH---------------HHHHHHHHHHCEEEEEECCGGGTSCCSS
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhH-HHHHHH---------------HHHHHHHHHcCCeEEEEeeccccCCCCC
Confidence 566644444444455678888888665321 111100 0112233344567777777665555443
No 305
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=27.31 E-value=3.1e+02 Score=23.84 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=50.2
Q ss_pred hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHhc-CCeeEE
Q 012238 190 HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTPEQWEKIADVIQEK-NHIPFF 267 (467)
Q Consensus 190 ~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~-~p~NPTG~~~~~~~l~~l~~~~~~~-~~~li~ 267 (467)
....++..|.++- +-+. +. .+.+.+++.+.. .. .+++++ +|.. .|..+.++.+++|.++.+.. ++.+.+
T Consensus 104 ~i~~i~~~G~k~g-val~-p~---t~~e~l~~~l~~--~D-~Vl~msv~pGf-~Gq~f~~~~l~ki~~lr~~~~~~~I~V 174 (228)
T 3ovp_A 104 LIKDIRENGMKVG-LAIK-PG---TSVEYLAPWANQ--ID-MALVMTVEPGF-GGQKFMEDMMPKVHWLRTQFPSLDIEV 174 (228)
T ss_dssp HHHHHHHTTCEEE-EEEC-TT---SCGGGTGGGGGG--CS-EEEEESSCTTT-CSCCCCGGGHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHcCCCEE-EEEc-CC---CCHHHHHHHhcc--CC-eEEEeeecCCC-CCcccCHHHHHHHHHHHHhcCCCCEEE
Confidence 4556677787643 3332 21 244555554442 22 344433 3332 57777777777777666544 466767
Q ss_pred eccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238 268 DVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (467)
Q Consensus 268 Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (467)
|- +.. ...+..+.+.+-++++++|
T Consensus 175 dG---GI~-------~~t~~~~~~aGAd~~VvGs 198 (228)
T 3ovp_A 175 DG---GVG-------PDTVHKCAEAGANMIVSGS 198 (228)
T ss_dssp ES---SCS-------TTTHHHHHHHTCCEEEESH
T ss_pred eC---CcC-------HHHHHHHHHcCCCEEEEeH
Confidence 63 232 1234456666777777775
No 306
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=27.23 E-value=54 Score=32.32 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 248 ~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
.++++++++.|+++|+-||.|-++-+...
T Consensus 96 ~~df~~lv~~~h~~Gi~VilD~V~NH~~~ 124 (475)
T 2z1k_A 96 NEALRHLLEVAHAHGVRVILDGVFNHTGR 124 (475)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccC
Confidence 79999999999999999999999877653
No 307
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=27.22 E-value=99 Score=27.51 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=49.1
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCC-CCc---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCC
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSP-TWG---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGG 229 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P-~y~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~ 229 (467)
..|+++++-.+. ...+...|.+|++..- .-. .....++..|.++..+..+ --|.+.+++.+++. -.+
T Consensus 23 VTGas~gIG~ai-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~ 96 (270)
T 3is3_A 23 VTGSGRGIGAAV-AVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKAD-----IRQVPEIVKLFDQAVAHFGH 96 (270)
T ss_dssp ESCTTSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECC-----TTSHHHHHHHHHHHHHHHSC
T ss_pred EECCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcC-----CCCHHHHHHHHHHHHHHcCC
Confidence 356666666541 1223457888877432 111 1223344567777777663 13556666555431 123
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 230 ~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
..+++.+....+.+. ..+.++|++..+.
T Consensus 97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 126 (270)
T 3is3_A 97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSL 126 (270)
T ss_dssp CCEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 456664444333332 2477778777553
No 308
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=27.12 E-value=1.4e+02 Score=26.65 Aligned_cols=95 Identities=20% Similarity=0.158 Sum_probs=48.7
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
..||++++-.+. ...+...|.+|++..-.-.... ..++..|.++..+..+ --|.+.+++.+++. -.+.
T Consensus 9 VTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~i 82 (264)
T 3tfo_A 9 ITGASGGIGEGI-ARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLD-----VTDRHSVAAFAQAAVDTWGRI 82 (264)
T ss_dssp ESSTTSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred EeCCccHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 366666666541 1223457888877653322222 2233456666666552 13555555554421 1244
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++.+..-.+.+. ..+.++|++..++
T Consensus 83 D~lVnnAG~~~~~~~~~~~~~~~~~~~~v 111 (264)
T 3tfo_A 83 DVLVNNAGVMPLSPLAAVKVDEWERMIDV 111 (264)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 56665554443332 3467778777554
No 309
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=27.05 E-value=56 Score=31.88 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 85 t~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 114 (435)
T 1mxg_A 85 SKEELVRLIQTAHAYGIKVIADVVINHRAG 114 (435)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccccC
Confidence 489999999999999999999999876553
No 310
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=26.89 E-value=2.1e+02 Score=24.76 Aligned_cols=92 Identities=14% Similarity=0.038 Sum_probs=43.9
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.|+++++-... ...+...|.+|++..-.-.......+..| +..+..+ --|.+.+++.+++. -.+..+++
T Consensus 11 TGas~giG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~D-----~~~~~~~~~~~~~~~~~~g~id~lv 82 (245)
T 1uls_A 11 TGAAHGIGRAT-LELFAKEGARLVACDIEEGPLREAAEAVG--AHPVVMD-----VADPASVERGFAEALAHLGRLDGVV 82 (245)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHTTT--CEEEECC-----TTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred ECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcC--CEEEEec-----CCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 56666665541 12234478888776433222233333445 3333331 13556665555431 12345666
Q ss_pred eCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 235 HGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 235 i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+....+.+. ..+.++|++..+.
T Consensus 83 n~Ag~~~~~~~~~~~~~~~~~~~~~ 107 (245)
T 1uls_A 83 HYAGITRDNFHWKMPLEDWELVLRV 107 (245)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 5444333221 2467777776554
No 311
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=26.78 E-value=28 Score=36.60 Aligned_cols=29 Identities=7% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 248 ~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
.++++++++.|+++|+-||.|-+|-+...
T Consensus 315 ~~dfk~LV~~aH~~GI~VIlDvV~NHt~~ 343 (718)
T 2e8y_A 315 KTELKQMINTLHQHGLRVILDVVFNHVYK 343 (718)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccC
Confidence 69999999999999999999999887764
No 312
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=26.77 E-value=54 Score=32.83 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
+.+++++|++.|+++|+-||.|-+|-+..
T Consensus 78 t~~dfk~Lv~~aH~~Gi~VilD~V~NHts 106 (549)
T 4aie_A 78 TMADMDELISKAKEHHIKIVMDLVVNHTS 106 (549)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccCCc
Confidence 48999999999999999999999987654
No 313
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=26.73 E-value=55 Score=32.88 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~~ 277 (467)
+.++++++++.|+++|+-||.|-++-+...+
T Consensus 91 t~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~ 121 (527)
T 1gcy_A 91 SDAQLRQAASALGGAGVKVLYDVVPNHMNRG 121 (527)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeecCcCCC
Confidence 3899999999999999999999998776543
No 314
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=26.58 E-value=3.2e+02 Score=23.81 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=26.9
Q ss_pred CCCCCH---HHHHHHHHHHHhc--CCeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEe-c
Q 012238 243 GIDPTP---EQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ-S 301 (467)
Q Consensus 243 G~~~~~---~~l~~l~~~~~~~--~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-S 301 (467)
|..+.+ +.++++.++..++ ++.|.+|. +... ..+..+.+.+-++++++ |
T Consensus 143 gQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdG---GI~~-------~~~~~~~~aGAd~~V~G~s 197 (231)
T 3ctl_A 143 GQPFIPEMLDKLAELKAWREREGLEYEIEVDG---SCNQ-------ATYEKLMAAGADVFIVGTS 197 (231)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHTCCCEEEEES---CCST-------TTHHHHHHHTCCEEEECTT
T ss_pred CccccHHHHHHHHHHHHHHhccCCCceEEEEC---CcCH-------HHHHHHHHcCCCEEEEccH
Confidence 545553 3344555555433 57777773 2221 23445666677888887 6
No 315
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=26.55 E-value=3.2e+02 Score=24.99 Aligned_cols=108 Identities=12% Similarity=0.116 Sum_probs=55.2
Q ss_pred ccCceeeeecCCchhHHHHHHHHHHHhCCCCEEE-EcCCC-----------CcchHHHHhhCCCCeEEeeeecCCCCCCC
Q 012238 148 KEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPT-----------WGNHKNIFNDARVPWSEYRYYDPKTVGLD 215 (467)
Q Consensus 148 ~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vl-v~~P~-----------y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 215 (467)
++..+++++..++..+-..+..+.. .|-+++ -.+|. |....++.+....++..+-+.++ .-
T Consensus 12 ~~~siaVV~Gasg~~G~~~~~~l~~---~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~----~~ 84 (305)
T 2fp4_A 12 DKNTKVICQGFTGKQGTFHSQQALE---YGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPP----FA 84 (305)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH---HTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH----HH
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHH---CCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHH----HH
Confidence 4667777544444444444422322 232322 34454 33444444433444444432111 23
Q ss_pred hhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-CCeeEEeccC
Q 012238 216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK-NHIPFFDVAY 271 (467)
Q Consensus 216 ~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~-~~~li~Deay 271 (467)
.+.+++.++. +.+.+++-++ |. +.++..++.+.++++ |+.+|-+.+.
T Consensus 85 ~~~~~e~i~~---Gi~~iv~~t~----G~--~~~~~~~l~~~a~~~~gi~liGPnc~ 132 (305)
T 2fp4_A 85 AAAINEAIDA---EVPLVVCITE----GI--PQQDMVRVKHRLLRQGKTRLIGPNCP 132 (305)
T ss_dssp HHHHHHHHHT---TCSEEEECCC----CC--CHHHHHHHHHHHTTCSSCEEECSSSC
T ss_pred HHHHHHHHHC---CCCEEEEECC----CC--ChHHHHHHHHHHHhcCCcEEEeCCCC
Confidence 4555555652 3334333233 33 456677899999999 9998877773
No 316
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=26.52 E-value=1.9e+02 Score=26.07 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCC------------Cc---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPT------------WG---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~------------y~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
.||++++-.+. ...+...|.+|++..-. -. .....++..|.++..+..+ --|.+.+++.
T Consensus 34 TGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~ 107 (299)
T 3t7c_A 34 TGAARGQGRSH-AITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVD-----VRDFDAMQAA 107 (299)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECC-----TTCHHHHHHH
T ss_pred ECCCCHHHHHH-HHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECC-----CCCHHHHHHH
Confidence 56666666541 12334578888875422 01 1122234567777777663 1355666555
Q ss_pred HHcC---CCCcEEEEeCCCCCCCCC---CCCHHHHHHHHHH
Q 012238 223 IKAA---PGGSFILLHGCAHNPTGI---DPTPEQWEKIADV 257 (467)
Q Consensus 223 l~~~---~~~~~~i~i~~p~NPTG~---~~~~~~l~~l~~~ 257 (467)
+++. -.+..+++.+....+.+. ..+.++|++..+.
T Consensus 108 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 148 (299)
T 3t7c_A 108 VDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDV 148 (299)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHH
Confidence 5421 123446665544333322 3477888777653
No 317
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=26.31 E-value=2.6e+02 Score=24.26 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=48.7
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcC-CCCc---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CCCC
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISS-PTWG---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~-P~y~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~ 229 (467)
..||++++-... ...+...|.+|++.. ..-. .....++..+.++..+..+ --|.+.+++.+++ .-.+
T Consensus 18 ITGas~giG~~i-a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~ 91 (256)
T 3ezl_A 18 VTGGMGGIGTSI-CQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGN-----VGDWDSTKQAFDKVKAEVGE 91 (256)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECC-----TTCHHHHHHHHHHHHHHTCC
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecC-----CCCHHHHHHHHHHHHHhcCC
Confidence 366666666541 122345787777643 2222 2233344566676666652 1355555555543 1234
Q ss_pred cEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012238 230 SFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (467)
Q Consensus 230 ~~~i~i~~p~NPTG--~~~~~~~l~~l~~~ 257 (467)
..+++++....+.+ ...+.+++++..+.
T Consensus 92 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~v 121 (256)
T 3ezl_A 92 IDVLVNNAGITRDVVFRKMTREDWQAVIDT 121 (256)
T ss_dssp EEEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 56666554433333 23567777776553
No 318
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=26.27 E-value=2.7e+02 Score=24.31 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=47.7
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEc-CCCCcch---HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLIS-SPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~-~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
.|+++++-.+. ...+...|.+|++. ...-... ...++..|.++..+..+ --|.+.+++.+++. -.+.
T Consensus 14 TGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~i 87 (259)
T 3edm_A 14 AGAGRDIGRAC-AIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKAD-----LTNAAEVEAAISAAADKFGEI 87 (259)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECC-----TTCHHHHHHHHHHHHHHHCSE
T ss_pred ECCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcC-----CCCHHHHHHHHHHHHHHhCCC
Confidence 56666665541 12234578888776 3332222 22334456677666653 13556665555431 1245
Q ss_pred EEEEeCCCCC-CCC--CCCCHHHHHHHHHH
Q 012238 231 FILLHGCAHN-PTG--IDPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~N-PTG--~~~~~~~l~~l~~~ 257 (467)
.+++.+.... +.+ ...+.++|++..++
T Consensus 88 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~v 117 (259)
T 3edm_A 88 HGLVHVAGGLIARKTIAEMDEAFWHQVLDV 117 (259)
T ss_dssp EEEEECCCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CEEEECCCccCCCCChhhCCHHHHHHHHHH
Confidence 5666544322 222 24567777776553
No 319
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=26.20 E-value=57 Score=32.26 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 80 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~ 109 (488)
T 1wza_A 80 TLEDFHKLVEAAHQRGIKVIIDLPINHTSE 109 (488)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 389999999999999999999999876653
No 320
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=26.12 E-value=1.1e+02 Score=28.69 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=55.2
Q ss_pred cCceeeeecCCchhHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc--
Q 012238 149 EQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA-- 225 (467)
Q Consensus 149 ~~~i~~~~t~ggt~al~l~~~~l~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~-- 225 (467)
+.+++.+....|++=-.++.++...+ .+|.+|+..+..-......++..|.....+.+..+ .+.+.+.+.+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~----~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQP----DTGEQALEIADMLV 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECC----SSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecC----CCHHHHHHHHHHHH
Confidence 55666655666666555543344332 35666655543332223345667776554444322 234444433321
Q ss_pred CCCCcEEEEeCCCCCCCC------CCCC----------HHHHHHHHHHHHhcCCeeEE
Q 012238 226 APGGSFILLHGCAHNPTG------IDPT----------PEQWEKIADVIQEKNHIPFF 267 (467)
Q Consensus 226 ~~~~~~~i~i~~p~NPTG------~~~~----------~~~l~~l~~~~~~~~~~li~ 267 (467)
...+..++++-++..-.. ..-+ .+.+.+|..+++++|+.+|+
T Consensus 136 ~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~ 193 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIF 193 (349)
T ss_dssp TTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred hcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 012345666665543221 0001 13346666667888876654
No 321
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=25.85 E-value=54 Score=32.32 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 125 (478)
T 2guy_A 96 TADDLKALSSALHERGMYLMVDVVANHMGY 125 (478)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccCCC
Confidence 389999999999999999999999876553
No 322
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=25.82 E-value=73 Score=32.45 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 245 ~~~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
.-+.++++++++.|+++|+-||.|-++-+...
T Consensus 215 ~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 246 (583)
T 1ea9_C 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGR 246 (583)
T ss_dssp TCCHHHHHHHHHHHTTTTCEEEEECCCSBCCT
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEccccCCC
Confidence 33589999999999999999999999887764
No 323
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=25.75 E-value=1.1e+02 Score=27.15 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCC-c---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTW-G---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y-~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
.||++++-... ...+...|.+|++..-.- . .....++..|.++..+..+ --|.+.+++.+++. -.+.
T Consensus 34 TGas~gIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----~~d~~~v~~~~~~~~~~~g~i 107 (269)
T 4dmm_A 34 TGASRGIGRAI-ALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKAD-----VSQESEVEALFAAVIERWGRL 107 (269)
T ss_dssp TTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECC-----TTSHHHHHHHHHHHHHHHSCC
T ss_pred ECCCCHHHHHH-HHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 56666666541 122345788887743211 1 1223344557777776653 13556665555421 1234
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++.+....+.+. ..+.++|++..+.
T Consensus 108 d~lv~nAg~~~~~~~~~~~~~~~~~~~~v 136 (269)
T 4dmm_A 108 DVLVNNAGITRDTLLLRMKRDDWQSVLDL 136 (269)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 56665544333332 3467777777553
No 324
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=25.71 E-value=2.3e+02 Score=27.69 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=52.3
Q ss_pred cCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCCCeEEeeeecCCCCCCChhhHHHHHHcCC
Q 012238 149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP 227 (467)
Q Consensus 149 ~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 227 (467)
..+|++ ..||.-|...+. .++..|..|.+.+|....-...+ ...+++++. - .++.+.+ .
T Consensus 12 ~~~vlV--vGgG~va~~k~~---~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~--~------~~~~~~l----~--- 71 (457)
T 1pjq_A 12 DRDCLI--VGGGDVAERKAR---LLLEAGARLTVNALTFIPQFTVWANEGMLTLVE--G------PFDETLL----D--- 71 (457)
T ss_dssp TCEEEE--ECCSHHHHHHHH---HHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEE--S------SCCGGGG----T---
T ss_pred CCEEEE--ECCCHHHHHHHH---HHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEE--C------CCCcccc----C---
Confidence 456777 788888888863 23456888888888764432222 222332222 1 1233333 1
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee-EEecc
Q 012238 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP-FFDVA 270 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l-i~Dea 270 (467)
+..+++. ++.+| +.=..+++.|+++|+++ ++|+.
T Consensus 72 -~~~lVi~-at~~~-------~~n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 72 -SCWLAIA-ATDDD-------TVNQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp -TCSEEEE-CCSCH-------HHHHHHHHHHHHTTCEEEETTCT
T ss_pred -CccEEEE-cCCCH-------HHHHHHHHHHHHcCCEEEECCCc
Confidence 2224443 44443 33457888899999986 46665
No 325
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=25.67 E-value=1.3e+02 Score=27.07 Aligned_cols=79 Identities=6% Similarity=-0.034 Sum_probs=49.8
Q ss_pred EEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 012238 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258 (467)
Q Consensus 179 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~ 258 (467)
.|+.....|.+....++... ..+.+|+. -++|-+|+-.+.++-.- ... .++++. .+++.++++++.++|
T Consensus 81 SVLTd~~~F~Gs~~~L~~vr-~~v~lPvL-rKDFiid~yQI~eAr~~-GAD-aILLI~-------a~L~~~~l~~l~~~A 149 (258)
T 4a29_A 81 SITTEEKYFNGSYETLRKIA-SSVSIPIL-MSDFIVKESQIDDAYNL-GAD-TVLLIV-------KILTERELESLLEYA 149 (258)
T ss_dssp EEECCSTTTCCCHHHHHHHH-TTCSSCEE-EESCCCSHHHHHHHHHH-TCS-EEEEEG-------GGSCHHHHHHHHHHH
T ss_pred EEeCCCCCCCCCHHHHHHHH-HhcCCCEe-eccccccHHHHHHHHHc-CCC-eeehHH-------hhcCHHHHHHHHHHH
Confidence 45666666765555444321 11234443 34788999888776542 123 344433 356789999999999
Q ss_pred HhcCCeeEEe
Q 012238 259 QEKNHIPFFD 268 (467)
Q Consensus 259 ~~~~~~li~D 268 (467)
++.|+-+++.
T Consensus 150 ~~lGl~~LvE 159 (258)
T 4a29_A 150 RSYGMEPLIL 159 (258)
T ss_dssp HHTTCCCEEE
T ss_pred HHHhHHHHHh
Confidence 9999888774
No 326
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=25.56 E-value=50 Score=32.00 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~~ 277 (467)
+.++++++++.|+++|+-||.|-++-+...+
T Consensus 73 ~~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 103 (422)
T 1ua7_A 73 TEQEFKEMCAAAEEYGIKVIVDAVINHTTFD 103 (422)
T ss_dssp EHHHHHHHHHHHHTTTCEEEEEECCSBCCSC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccCcccCC
Confidence 5899999999999999999999998777644
No 327
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=25.54 E-value=51 Score=32.51 Aligned_cols=31 Identities=3% Similarity=0.082 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~~ 277 (467)
+.++++++++.|+++|+-||.|-++-+...+
T Consensus 73 t~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 103 (471)
T 1jae_A 73 DESAFTDMTRRCNDAGVRIYVDAVINHMTGM 103 (471)
T ss_dssp EHHHHHHHHHHHHHTTCEEEEEECCSBCCSS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccccCC
Confidence 4899999999999999999999998766543
No 328
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=25.41 E-value=2.4e+02 Score=24.93 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=55.1
Q ss_pred CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (467)
Q Consensus 150 ~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 228 (467)
.++++ ..|++.++-.+. ...+...|.+|++..-.- ......++..|.+...+..+-. |.+.+++.++. .
T Consensus 9 GKval--VTGas~GIG~ai-A~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~-----d~~~v~~~~~~--g 78 (247)
T 4hp8_A 9 GRKAL--VTGANTGLGQAI-AVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFA-----DPLAAKDSFTD--A 78 (247)
T ss_dssp TCEEE--ETTTTSHHHHHH-HHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTT-----STTTTTTSSTT--T
T ss_pred CCEEE--EeCcCCHHHHHH-HHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCC-----CHHHHHHHHHh--C
Confidence 34555 456666676652 123445888888765321 2344556778888888776321 23333333332 3
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
+..+++.|-.-++.+. .++.++|+++.++-
T Consensus 79 ~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vN 110 (247)
T 4hp8_A 79 GFDILVNNAGIIRRADSVEFSELDWDEVMDVN 110 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccccHHHHHHHHHHH
Confidence 4456664444343332 45788999987654
No 329
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=25.36 E-value=2.1e+02 Score=26.05 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHhCCCCcccccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcC
Q 012238 127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS 184 (467)
Q Consensus 127 G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~ 184 (467)
...++|+.+..+-. . ...|.+|+|.|+-+.=++. ++.....+|.|+++-
T Consensus 9 ti~elr~~~~~~~~-~------g~~Ig~VPTMGaLH~GHls--Lv~~Ar~~d~VVVSI 57 (285)
T 3mxt_A 9 SVKEAKQIVKDWKS-H------QLSIGYVPTMGFLHDGHLS--LVKHAKTQDKVIVSI 57 (285)
T ss_dssp CHHHHHHHHHHHHH-T------TCCEEEEEECSSCCHHHHH--HHHHHTTSSEEEEEE
T ss_pred CHHHHHHHHHHHHH-c------CCeEEEEcCCCcccHHHHH--HHHHHHhCCEEEEEe
Confidence 46788888888732 2 2478899999998888886 454443489888763
No 330
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=25.30 E-value=2.1e+02 Score=25.44 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=52.4
Q ss_pred CceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCc--chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-
Q 012238 150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA- 226 (467)
Q Consensus 150 ~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 226 (467)
+.+++ ..||+.++-.+. ...+...|.+|++..-.-. .....+...|.+...+..+- -|.+.+++.+++.
T Consensus 7 gKval--VTGas~GIG~ai-a~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 7 DKVVI--VTGGASGIGGAI-SMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVEL-----QDDAQCRDAVAQTI 78 (258)
T ss_dssp TCEEE--EETTTSHHHHHH-HHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHH
T ss_pred CCEEE--EeCCCCHHHHHH-HHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeec-----CCHHHHHHHHHHHH
Confidence 34545 456666676541 1233457887777542222 22333445677777777631 2455555444331
Q ss_pred --CCCcEEEEeCCCC-CCCCCCCCHHHHHHHHHH
Q 012238 227 --PGGSFILLHGCAH-NPTGIDPTPEQWEKIADV 257 (467)
Q Consensus 227 --~~~~~~i~i~~p~-NPTG~~~~~~~l~~l~~~ 257 (467)
-.+..+++.+-.- .+.....+.++|++..++
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~v 112 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLER 112 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHH
Confidence 1244466544432 234456678888888664
No 331
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=24.97 E-value=1.1e+02 Score=27.46 Aligned_cols=94 Identities=11% Similarity=0.162 Sum_probs=45.8
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCC-----------C-----cc---hHHHHhhCCCCeEEeeeecCCCCCCChhh
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPT-----------W-----GN---HKNIFNDARVPWSEYRYYDPKTVGLDFEG 218 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~-----------y-----~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 218 (467)
.|+++++-... ...+...|.+|++..-. + .. ....++..|.++..+..+ --|.+.
T Consensus 17 TGas~gIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~ 90 (286)
T 3uve_A 17 TGAARGQGRSH-AVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVD-----VRDYDA 90 (286)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECC-----TTCHHH
T ss_pred eCCCchHHHHH-HHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcC-----CCCHHH
Confidence 56666665541 12334578888775322 1 01 112233456666666653 135555
Q ss_pred HHHHHHcC---CCCcEEEEeCCCCCCCCC---CCCHHHHHHHHHH
Q 012238 219 MIADIKAA---PGGSFILLHGCAHNPTGI---DPTPEQWEKIADV 257 (467)
Q Consensus 219 l~~~l~~~---~~~~~~i~i~~p~NPTG~---~~~~~~l~~l~~~ 257 (467)
+++.+++. -.+..+++.+....+.+. ..+.++|++..+.
T Consensus 91 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 135 (286)
T 3uve_A 91 LKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDI 135 (286)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHH
Confidence 55554421 123446665544333332 2467777776553
No 332
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=24.96 E-value=1.5e+02 Score=26.35 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=48.0
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
.||++++-... ...+...|.+|++..-.-....... ...|.++..+..+ --|.+.+++.+++. -.+.
T Consensus 33 TGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~i 106 (277)
T 4fc7_A 33 TGGGSGIGFRI-AEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMD-----VRAPPAVMAAVDQALKEFGRI 106 (277)
T ss_dssp ETTTSHHHHHH-HHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred eCCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 56666666541 1234567888887654332222222 2246677766653 13555555555421 1244
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++.+....+.+. ..+.++|++..+.
T Consensus 107 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 135 (277)
T 4fc7_A 107 DILINCAAGNFLCPAGALSFNAFKTVMDI 135 (277)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCcCCCCCCcccCCHHHHHHHHHH
Confidence 56665544332222 2567778777653
No 333
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=24.75 E-value=52 Score=32.52 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
+.++++++++.|+++|+-||.|-++-+..
T Consensus 79 t~~df~~lv~~aH~~Gi~VilD~V~NH~~ 107 (480)
T 1ud2_A 79 TKAQLERAIGSLKSNDINVYGDVVMNHKM 107 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 38999999999999999999999987664
No 334
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=24.70 E-value=2.2e+02 Score=26.44 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=47.5
Q ss_pred CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
.|..+..++....++++.+-+.+ ..-.+...++++ .+..+++ ..|.+ .+.++.+++.+.++++|+.+
T Consensus 54 ~~~~~~~~l~~~~~D~V~i~tp~----~~h~~~~~~al~---~gk~vl~----EKP~~--~~~~~~~~l~~~a~~~~~~~ 120 (354)
T 3db2_A 54 GDATMEALLAREDVEMVIITVPN----DKHAEVIEQCAR---SGKHIYV----EKPIS--VSLDHAQRIDQVIKETGVKF 120 (354)
T ss_dssp CCSSHHHHHHCSSCCEEEECSCT----TSHHHHHHHHHH---TTCEEEE----ESSSC--SSHHHHHHHHHHHHHHCCCE
T ss_pred CcCCHHHHhcCCCCCEEEEeCCh----HHHHHHHHHHHH---cCCEEEE----ccCCC--CCHHHHHHHHHHHHHcCCeE
Confidence 46677777766667777765521 134555666666 3444444 34433 45788999999999999888
Q ss_pred EEeccC
Q 012238 266 FFDVAY 271 (467)
Q Consensus 266 i~Deay 271 (467)
.+...+
T Consensus 121 ~v~~~~ 126 (354)
T 3db2_A 121 LCGHSS 126 (354)
T ss_dssp EEECGG
T ss_pred EEeech
Confidence 876553
No 335
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=24.69 E-value=2.1e+02 Score=25.25 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=45.6
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCCeEEeeeecCCCCCCChhhHHHHHH---cCCCC
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIK---AAPGG 229 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~ 229 (467)
..|+++++-... ...+...|.+|++..-.-.......+ ..|.++..+..+- -|.+.+++.++ +.-.+
T Consensus 25 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~ 98 (266)
T 4egf_A 25 ITGATKGIGADI-ARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDL-----AEPDAPAELARRAAEAFGG 98 (266)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCT-----TSTTHHHHHHHHHHHHHTS
T ss_pred EeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecC-----CCHHHHHHHHHHHHHHcCC
Confidence 366666666541 12234578888876543322222221 1466777766531 23344433332 21123
Q ss_pred cEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012238 230 SFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (467)
Q Consensus 230 ~~~i~i~~p~NPTG--~~~~~~~l~~l~~~ 257 (467)
..+++++......+ ...+.++|++..+.
T Consensus 99 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 128 (266)
T 4egf_A 99 LDVLVNNAGISHPQPVVDTDPQLFDATIAV 128 (266)
T ss_dssp CSEEEEECCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHH
Confidence 44666444333222 23467777776553
No 336
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=24.51 E-value=3.4e+02 Score=23.35 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=38.3
Q ss_pred CEEEEcC---CCC-cchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc--CCCCcEEEEeCCCCCCC--CCCCCHH
Q 012238 178 AKVLISS---PTW-GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA--APGGSFILLHGCAHNPT--GIDPTPE 249 (467)
Q Consensus 178 d~Vlv~~---P~y-~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~~~~~i~i~~p~NPT--G~~~~~~ 249 (467)
|-|.+.. +.. ......++..|..+. +.+. +. -+.+.++..... . .. .+++.+ -+|+ |..+...
T Consensus 89 d~v~vH~~~~~~~~~~~~~~i~~~g~~ig-v~~~-p~---t~~e~~~~~~~~~~~-~d-~vl~~s--v~pg~~g~~~~~~ 159 (228)
T 1h1y_A 89 SGFTFHIEVSRDNWQELIQSIKAKGMRPG-VSLR-PG---TPVEEVFPLVEAENP-VE-LVLVMT--VEPGFGGQKFMPE 159 (228)
T ss_dssp SEEEEEGGGCTTTHHHHHHHHHHTTCEEE-EEEC-TT---SCGGGGHHHHHSSSC-CS-EEEEES--SCTTCSSCCCCGG
T ss_pred CEEEECCCCcccHHHHHHHHHHHcCCCEE-EEEe-CC---CCHHHHHHHHhcCCC-CC-EEEEEe--ecCCCCcccCCHH
Confidence 5554443 222 233445555665544 4442 11 234555554430 1 12 233322 3454 5556655
Q ss_pred HHHHHHHHHHhc-CCeeEEe
Q 012238 250 QWEKIADVIQEK-NHIPFFD 268 (467)
Q Consensus 250 ~l~~l~~~~~~~-~~~li~D 268 (467)
.++.+.++.+.. ++.+++|
T Consensus 160 ~l~~i~~~~~~~~~~pi~v~ 179 (228)
T 1h1y_A 160 MMEKVRALRKKYPSLDIEVD 179 (228)
T ss_dssp GHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 566665555544 6677666
No 337
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=24.46 E-value=96 Score=28.13 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=35.9
Q ss_pred CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEec
Q 012238 211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDV 269 (467)
Q Consensus 211 ~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~De 269 (467)
+|-+|+..+.++... .-..++++.. .++.++++++.+.|++.|+-+++|-
T Consensus 127 dfi~d~~qi~ea~~~--GAD~VlLi~a-------~L~~~~l~~l~~~a~~lGl~~lvev 176 (272)
T 3tsm_A 127 DFLFDPYQVYEARSW--GADCILIIMA-------SVDDDLAKELEDTAFALGMDALIEV 176 (272)
T ss_dssp SCCCSTHHHHHHHHT--TCSEEEEETT-------TSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CccCCHHHHHHHHHc--CCCEEEEccc-------ccCHHHHHHHHHHHHHcCCeEEEEe
Confidence 567888888877652 2223444332 4578899999999999999888875
No 338
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=24.46 E-value=66 Score=32.78 Aligned_cols=30 Identities=7% Similarity=0.197 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 218 t~~dfk~lv~~~H~~Gi~VilD~V~NH~~~ 247 (585)
T 1wzl_A 218 DLPTFRRLVDEAHRRGIKIILDAVFNHAGD 247 (585)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEcCCcCCC
Confidence 489999999999999999999999887764
No 339
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=24.37 E-value=2.4e+02 Score=24.31 Aligned_cols=79 Identities=15% Similarity=-0.001 Sum_probs=42.1
Q ss_pred cCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCC
Q 012238 149 EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG 228 (467)
Q Consensus 149 ~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 228 (467)
...+++ .||++++-... ...+...|.+|++..-.-.......+..+..+..+..+ .-|.+.+.+.+++. .
T Consensus 14 ~k~vlV---TGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~-~ 83 (249)
T 3f9i_A 14 GKTSLI---TGASSGIGSAI-ARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCN-----LANKEECSNLISKT-S 83 (249)
T ss_dssp TCEEEE---TTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECC-----TTSHHHHHHHHHTC-S
T ss_pred CCEEEE---ECCCChHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcC-----CCCHHHHHHHHHhc-C
Confidence 345655 56666665541 12234578888876644333444444444444444432 24677787777754 2
Q ss_pred CcEEEEeCC
Q 012238 229 GSFILLHGC 237 (467)
Q Consensus 229 ~~~~i~i~~ 237 (467)
+..+++++.
T Consensus 84 ~id~li~~A 92 (249)
T 3f9i_A 84 NLDILVCNA 92 (249)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 344666443
No 340
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=24.34 E-value=1.8e+02 Score=26.01 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCc----------chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC-
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWG----------NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA- 226 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~----------~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 226 (467)
.|+++++-... ...+...|.+|++..-.-. .....++..|.++..+..+ --|.+.+++.+++.
T Consensus 15 TGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~ 88 (285)
T 3sc4_A 15 SGGSRGIGLAI-AKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGD-----IRDGDAVAAAVAKTV 88 (285)
T ss_dssp ESCSSHHHHHH-HHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECC-----TTSHHHHHHHHHHHH
T ss_pred ECCCCHHHHHH-HHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHHH
Confidence 56666665541 2234557888877643222 1223334456667666653 13555555555421
Q ss_pred --CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 227 --PGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 227 --~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
..+..+++.+....+.+. ..+.++|++..+.
T Consensus 89 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 123 (285)
T 3sc4_A 89 EQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGI 123 (285)
T ss_dssp HHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 123446665554433332 3567777776553
No 341
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=24.33 E-value=57 Score=32.22 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 125 (484)
T 2aaa_A 96 TADNLKSLSDALHARGMYLMVDVVPDHMGY 125 (484)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCSBCCB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCcCC
Confidence 489999999999999999999999876654
No 342
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=24.26 E-value=1.6e+02 Score=24.92 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=22.0
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEeee
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRY 206 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~ 206 (467)
.+-.+++..+ ... ..|..|++...+- ...++ ..+.+++.++.
T Consensus 36 ~~l~~~v~~a---~~~-~~~~dVIISRGgt---a~~lr~~~~iPVV~I~~ 78 (196)
T 2q5c_A 36 ASLTRASKIA---FGL-QDEVDAIISRGAT---SDYIKKSVSIPSISIKV 78 (196)
T ss_dssp CCHHHHHHHH---HHH-TTTCSEEEEEHHH---HHHHHTTCSSCEEEECC
T ss_pred CCHHHHHHHH---HHh-cCCCeEEEECChH---HHHHHHhCCCCEEEEcC
Confidence 4445566664 333 4555566655332 22333 45677777765
No 343
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=24.04 E-value=3.8e+02 Score=23.71 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=48.0
Q ss_pred chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeC-CCCCCCCCCCCH---HHHHHHHHHHHhc--C
Q 012238 189 NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTP---EQWEKIADVIQEK--N 262 (467)
Q Consensus 189 ~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~-~p~NPTG~~~~~---~~l~~l~~~~~~~--~ 262 (467)
.....++..|.++-. -+. +. -.++.++..+.. .. .+++++ +|.. .|..+-+ +.++++.+++.++ +
T Consensus 125 ~~i~~ir~~G~k~Gv-aln-p~---Tp~e~l~~~l~~--vD-~VlvMsV~PGf-gGQ~fi~~~l~KI~~lr~~~~~~~~~ 195 (246)
T 3inp_A 125 RSLQLIKSFGIQAGL-ALN-PA---TGIDCLKYVESN--ID-RVLIMSVNPGF-GGQKFIPAMLDKAKEISKWISSTDRD 195 (246)
T ss_dssp HHHHHHHTTTSEEEE-EEC-TT---CCSGGGTTTGGG--CS-EEEEECSCTTC---CCCCTTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCeEEE-Eec-CC---CCHHHHHHHHhc--CC-EEEEeeecCCC-CCcccchHHHHHHHHHHHHHHhcCCC
Confidence 345566778876533 342 22 244555555542 22 333332 3332 4654544 4445555555443 4
Q ss_pred CeeEEeccCCCCCCCCCCCChhHHHHHHhcCCeEEEEec
Q 012238 263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301 (467)
Q Consensus 263 ~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 301 (467)
+.|.+|-= ... ..+..+.+.+-++++++|
T Consensus 196 ~~I~VDGG---I~~-------~ti~~~~~aGAD~~V~GS 224 (246)
T 3inp_A 196 ILLEIDGG---VNP-------YNIAEIAVCGVNAFVAGS 224 (246)
T ss_dssp CEEEEESS---CCT-------TTHHHHHTTTCCEEEESH
T ss_pred eeEEEECC---cCH-------HHHHHHHHcCCCEEEEeh
Confidence 77778842 321 134566677778888886
No 344
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=23.95 E-value=3.3e+02 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 246 ~~~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
.+.+.+.++++.|+++|+-|+.|--|+++-
T Consensus 86 ~d~~~~~~~a~~Ak~~GLkVlldfHysD~W 115 (399)
T 1ur4_A 86 NDLEKAIQIGKRATANGMKLLADFHYSDFW 115 (399)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECSSSSC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccCCcc
Confidence 578999999999999999999998777654
No 345
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=23.88 E-value=55 Score=32.36 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
+.++++++++.|+++|+-||.|-++-+..
T Consensus 77 t~~df~~lv~~aH~~Gi~VilD~V~NH~~ 105 (483)
T 3bh4_A 77 TKSELQDAIGSLHSRNVQVYGDVVLNHKA 105 (483)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 38999999999999999999999987664
No 346
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=23.62 E-value=67 Score=31.18 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 248 ~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
.++++++++.|+++|+-||.|-++-+..
T Consensus 81 ~~d~~~lv~~ah~~Gi~vilD~V~NH~s 108 (424)
T 2dh2_A 81 KEDFDSLLQSAKKKSIRVILDLTPNYRG 108 (424)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTTTS
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 8999999999999999999999987665
No 347
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=23.54 E-value=56 Score=32.30 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
+.++++++++.|+++|+-||.|-++-+..
T Consensus 81 t~~df~~Lv~~aH~~Gi~VilD~V~NH~~ 109 (485)
T 1wpc_A 81 TRSQLQAAVTSLKNNGIQVYGDVVMNHKG 109 (485)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccccC
Confidence 38999999999999999999999987664
No 348
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=23.42 E-value=1.7e+02 Score=26.13 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=48.6
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSF 231 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~ 231 (467)
.||++++-... ...+...|.+|++..-.-.... ..++..|.++..+..+ --|.+.+++.+++. -.+..
T Consensus 30 TGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~id 103 (279)
T 3sju_A 30 TGVSSGIGLAV-ARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCD-----VTSTDEVHAAVAAAVERFGPIG 103 (279)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHCSCC
T ss_pred eCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHHHHHcCCCc
Confidence 56666666541 1223447888877654332222 2234456677766653 13566665555431 12445
Q ss_pred EEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 232 ILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 232 ~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
+++.+....+.+. ..+.++|+++.+.
T Consensus 104 ~lv~nAg~~~~~~~~~~~~~~~~~~~~v 131 (279)
T 3sju_A 104 ILVNSAGRNGGGETADLDDALWADVLDT 131 (279)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 6665544433332 2567777776553
No 349
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=23.41 E-value=74 Score=32.40 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 221 t~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 250 (588)
T 1j0h_A 221 DKETLKTLIDRCHEKGIRVMLDAVFNHCGY 250 (588)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCcCcc
Confidence 389999999999999999999999887764
No 350
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=23.18 E-value=56 Score=32.33 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 248 ~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
.++++++++.|+++|+-||.|-++-+...
T Consensus 102 ~~df~~Lv~~aH~~Gi~VilD~V~NH~s~ 130 (488)
T 2wc7_A 102 NEAFKELLDAAHQRNIKVVLDGVFNHSSR 130 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcCCC
Confidence 68999999999999999999999877653
No 351
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=23.00 E-value=1.4e+02 Score=27.36 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=46.9
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCC----------Cc---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHH
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPT----------WG---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI 223 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~----------y~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l 223 (467)
..||++++-... ...+...|.+|++..-. -. .....++..|.++..+..+ .-|.+.+++.+
T Consensus 32 VTGas~GIG~ai-a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~ 105 (322)
T 3qlj_A 32 VTGAGGGIGRAH-ALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSN-----VADWDQAAGLI 105 (322)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCC-----TTSHHHHHHHH
T ss_pred EECCCcHHHHHH-HHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHH
Confidence 356666666541 12234578888876422 11 1222334456666665542 13555555555
Q ss_pred HcC---CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 224 KAA---PGGSFILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 224 ~~~---~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
++. -.+..+++.+......+. ..+.++|++..+.-
T Consensus 106 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN 145 (322)
T 3qlj_A 106 QTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVH 145 (322)
T ss_dssp HHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHh
Confidence 421 123446664433333221 34677777765543
No 352
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=22.99 E-value=49 Score=24.05 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCeeEEecc
Q 012238 250 QWEKIADVIQEKNHIPFFDVA 270 (467)
Q Consensus 250 ~l~~l~~~~~~~~~~li~Dea 270 (467)
.-++|.++++++|+.++.|..
T Consensus 28 ~A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 28 KALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHHcCCCEEeCHH
Confidence 356788889999999999865
No 353
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=22.95 E-value=2.6e+02 Score=26.23 Aligned_cols=72 Identities=8% Similarity=-0.085 Sum_probs=37.5
Q ss_pred CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
.|..+..++..-..+++.+-+.. ..-.+...++++ .+.-+++ .-|.+ .+.++.++|.+.++++|+.+
T Consensus 71 ~~~~~~~ll~~~~iD~V~i~tp~----~~h~~~~~~al~---~Gk~V~~----EKP~a--~~~~~~~~l~~~a~~~~~~~ 137 (383)
T 3oqb_A 71 WTTDLDAALADKNDTMFFDAATT----QARPGLLTQAIN---AGKHVYC----EKPIA--TNFEEALEVVKLANSKGVKH 137 (383)
T ss_dssp EESCHHHHHHCSSCCEEEECSCS----SSSHHHHHHHHT---TTCEEEE----CSCSC--SSHHHHHHHHHHHHHTTCCE
T ss_pred ccCCHHHHhcCCCCCEEEECCCc----hHHHHHHHHHHH---CCCeEEE----cCCCC--CCHHHHHHHHHHHHHcCCeE
Confidence 34555566555555555554311 133455555555 2333333 33433 34667777777777777666
Q ss_pred EEecc
Q 012238 266 FFDVA 270 (467)
Q Consensus 266 i~Dea 270 (467)
.+-..
T Consensus 138 ~v~~~ 142 (383)
T 3oqb_A 138 GTVQD 142 (383)
T ss_dssp EECCG
T ss_pred EEEec
Confidence 55443
No 354
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=22.85 E-value=1.9e+02 Score=27.43 Aligned_cols=11 Identities=36% Similarity=0.286 Sum_probs=6.6
Q ss_pred CEEEEcCCCCc
Q 012238 178 AKVLISSPTWG 188 (467)
Q Consensus 178 d~Vlv~~P~y~ 188 (467)
|-|++..|...
T Consensus 66 D~V~i~tp~~~ 76 (387)
T 3moi_A 66 DAVYIASPHQF 76 (387)
T ss_dssp SEEEECSCGGG
T ss_pred CEEEEcCCcHH
Confidence 66666666543
No 355
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=22.76 E-value=2.3e+02 Score=27.16 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCeeEEecc
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVA 270 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Dea 270 (467)
+.++.++|++.++++|+.+.+...
T Consensus 146 ~~~ea~~l~~~a~~~g~~~~v~~~ 169 (417)
T 3v5n_A 146 TLADAKKLKKAADESDALFVLTHN 169 (417)
T ss_dssp SHHHHHHHHHHHHHCSSCEEEECG
T ss_pred CHHHHHHHHHHHHHcCCEEEEEec
Confidence 455566666666666655555443
No 356
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=22.74 E-value=55 Score=32.75 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
+.++++++++.|+++|+-||.|-++-+..
T Consensus 80 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 108 (515)
T 1hvx_A 80 TKAQYLQAIQAAHAAGMQVYADVVFDHKG 108 (515)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecCCcc
Confidence 48999999999999999999999987664
No 357
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=22.69 E-value=2.5e+02 Score=24.80 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=47.7
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCC-------C-----c---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPT-------W-----G---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~-------y-----~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
.|+++++-.+. ...+...|.+|++..-. | . .....++..|.++..+..+ --|.+.+++.
T Consensus 16 TGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~ 89 (281)
T 3s55_A 16 TGGARGMGRSH-AVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVD-----VKDRAALESF 89 (281)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECC-----TTCHHHHHHH
T ss_pred eCCCchHHHHH-HHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCC-----CCCHHHHHHH
Confidence 56666665541 12234578888775432 0 0 1112234556677776653 1355666555
Q ss_pred HHcC---CCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012238 223 IKAA---PGGSFILLHGCAHNPTG--IDPTPEQWEKIADV 257 (467)
Q Consensus 223 l~~~---~~~~~~i~i~~p~NPTG--~~~~~~~l~~l~~~ 257 (467)
+++. -.+..+++++....+.+ ...+.++|++..+.
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 129 (281)
T 3s55_A 90 VAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGT 129 (281)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 5431 12345666554433333 23567777776553
No 358
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=22.61 E-value=1.3e+02 Score=26.69 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=47.3
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCC------------C-cc---hHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPT------------W-GN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~------------y-~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
.|+++++-... ...+...|.+|++..-. - .. ....++..+.++..+..+ .-|.+.+++
T Consensus 17 TGas~GIG~a~-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~ 90 (277)
T 3tsc_A 17 TGAARGQGRAH-AVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVD-----TRDFDRLRK 90 (277)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECC-----TTCHHHHHH
T ss_pred ECCccHHHHHH-HHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECC-----CCCHHHHHH
Confidence 56666665541 12334578888875320 1 11 112233456666666653 135666666
Q ss_pred HHHcC---CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 222 DIKAA---PGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 222 ~l~~~---~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++. -.+..+++.+....+.+. ..+.++|++..+.
T Consensus 91 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 3tsc_A 91 VVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDI 131 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 55431 123456665544433332 3467777777553
No 359
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=22.50 E-value=3.8e+02 Score=23.36 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=48.4
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCc------chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CC
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWG------NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PG 228 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~------~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~ 228 (467)
.||++++-... ...+...|.+|++..-.-. .....++..|.++..+..+ --|.+.+++.+++. -.
T Consensus 17 TGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g 90 (262)
T 3ksu_A 17 AGGIKNLGALT-AKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSD-----LSNEEEVAKLFDFAEKEFG 90 (262)
T ss_dssp ETCSSHHHHHH-HHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECC-----CCSHHHHHHHHHHHHHHHC
T ss_pred ECCCchHHHHH-HHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHHHHHcC
Confidence 56666666541 2334558888887532111 1122233456667666653 13556665555431 13
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 229 GSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 229 ~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
+..+++.+....+.+. ..+.++|++..+.
T Consensus 91 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 121 (262)
T 3ksu_A 91 KVDIAINTVGKVLKKPIVETSEAEFDAMDTI 121 (262)
T ss_dssp SEEEEEECCCCCCSSCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 4566665544333332 3467777777654
No 360
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=22.47 E-value=66 Score=28.57 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=37.5
Q ss_pred CCCEEEEcCCCC-cchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCC
Q 012238 176 PGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239 (467)
Q Consensus 176 ~gd~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~ 239 (467)
.|-+|++..|.- ..+...++..|++++.+|+..-. . .|.+.+.+.+.........++++++|
T Consensus 7 ~g~~vlvtr~~~~~~l~~~L~~~G~~~~~~P~i~i~-~-~~~~~l~~~~~~l~~~~d~iiftS~~ 69 (261)
T 1wcw_A 7 DAVRVAYAGLRRKEAFKALAEKLGFTPLLFPVQATE-K-VPVPEYRDQVRALAQGVDLFLATTGV 69 (261)
T ss_dssp -CCEEEECCSTTHHHHHHHHHHTTCEEEECCCEEEE-E-CCGGGGHHHHHHHHTCCSEEEECCHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHCCCcEEEeccEEEe-c-CCHHHHHHHHHhhccCCCEEEEeCHH
Confidence 478999988774 44566778899999999875322 1 25666666554310122345555544
No 361
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=22.41 E-value=92 Score=29.67 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHhcCCeeEEecc
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVA 270 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Dea 270 (467)
+.+|.++++++++++|+.+.+..-
T Consensus 104 ~~~ea~~l~~~A~~~g~~~~v~~~ 127 (372)
T 4gmf_A 104 HPDDISSLQTLAQEQGCCYWINTF 127 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECS
T ss_pred CHHHHHHHHHHHHHcCCEEEEcCc
Confidence 344555555555555555555443
No 362
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=22.38 E-value=2.7e+02 Score=25.87 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=48.9
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCc----------chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWG----------NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA 226 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~----------~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 226 (467)
..|++.++-.+. ...+...|.+|++..-.-. .....++..|.++..+..+ --|.+.+++.+++.
T Consensus 50 VTGas~GIG~ai-a~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~D-----v~d~~~v~~~~~~~ 123 (346)
T 3kvo_A 50 ITGASRGIGKAI-ALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVD-----VRDEQQISAAVEKA 123 (346)
T ss_dssp EETTTSHHHHHH-HHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECC-----TTCHHHHHHHHHHH
T ss_pred EeCCChHHHHHH-HHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEcc-----CCCHHHHHHHHHHH
Confidence 366666666541 2334567888877642221 1233445567777776653 13556666555431
Q ss_pred ---CCCcEEEEeCCCCCCCC--CCCCHHHHHHHHH
Q 012238 227 ---PGGSFILLHGCAHNPTG--IDPTPEQWEKIAD 256 (467)
Q Consensus 227 ---~~~~~~i~i~~p~NPTG--~~~~~~~l~~l~~ 256 (467)
-.+..+++.+....+.+ ...+.++|+++.+
T Consensus 124 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~ 158 (346)
T 3kvo_A 124 IKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMN 158 (346)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 12445666554433322 2356777776654
No 363
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=22.29 E-value=1.6e+02 Score=26.36 Aligned_cols=73 Identities=11% Similarity=-0.064 Sum_probs=39.6
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILL 234 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~ 234 (467)
.|+++++-.+. ...+...|.+|++..-.-.......+..+.++..+..+ --|.+.+++.+++. -.+..+++
T Consensus 11 TGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~iD~lv 84 (281)
T 3zv4_A 11 TGGASGLGRAL-VDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGD-----VRSLQDQKRAAERCLAAFGKIDTLI 84 (281)
T ss_dssp ETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECC-----TTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ECCCcHHHHHH-HHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcC-----CCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 56666666541 12234578888887654444445555667777777653 13555555554431 12344666
Q ss_pred eC
Q 012238 235 HG 236 (467)
Q Consensus 235 i~ 236 (467)
.+
T Consensus 85 nn 86 (281)
T 3zv4_A 85 PN 86 (281)
T ss_dssp CC
T ss_pred EC
Confidence 33
No 364
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=22.26 E-value=2.1e+02 Score=24.98 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=48.5
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH---HhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
..|+++++-.+. ...+...|.+|++..-.-...... ++..+.++..+..+ --|.+.+++.+++. -.+.
T Consensus 11 VTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~i 84 (257)
T 3imf_A 11 ITGGSSGMGKGM-ATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMD-----VRNTDDIQKMIEQIDEKFGRI 84 (257)
T ss_dssp ETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc-----CCCHHHHHHHHHHHHHHcCCC
Confidence 366666666541 122345788888765333222222 23345566666553 13555555555421 1234
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 231 FILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 231 ~~i~i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
.+++.+....+.+. ..+.++|++..+.-
T Consensus 85 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~n 114 (257)
T 3imf_A 85 DILINNAAGNFICPAEDLSVNGWNSVINIV 114 (257)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHH
Confidence 56665444332222 35677787776543
No 365
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=22.23 E-value=4.4e+02 Score=23.87 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=40.9
Q ss_pred CCCcchHHHHhhCC-CCeEEeeeecCCCCCCChhhHHHHHHcCCCCcE-EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 012238 185 PTWGNHKNIFNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF-ILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262 (467)
Q Consensus 185 P~y~~~~~~~~~~G-~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~-~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~ 262 (467)
|+|....++.+..+ .++..+-+. + ..-.+.+++.++ .+.+ +++++ +| ++.++.++|.+.+++++
T Consensus 57 ~vy~sl~el~~~~~~~DvaIi~vp-~---~~~~~~v~ea~~---~Gi~~vVi~t-----~G--~~~~~~~~l~~~A~~~g 122 (297)
T 2yv2_A 57 PVYDSVKEALAEHPEINTSIVFVP-A---PFAPDAVYEAVD---AGIRLVVVIT-----EG--IPVHDTMRFVNYARQKG 122 (297)
T ss_dssp EEESSHHHHHHHCTTCCEEEECCC-G---GGHHHHHHHHHH---TTCSEEEECC-----CC--CCHHHHHHHHHHHHHHT
T ss_pred eeeCCHHHHhhcCCCCCEEEEecC-H---HHHHHHHHHHHH---CCCCEEEEEC-----CC--CCHHHHHHHHHHHHHcC
Confidence 33444455544323 444443221 1 134566666666 3344 44422 24 35777889999999999
Q ss_pred CeeEEecc
Q 012238 263 HIPFFDVA 270 (467)
Q Consensus 263 ~~li~Dea 270 (467)
+.++-..+
T Consensus 123 i~viGPNc 130 (297)
T 2yv2_A 123 ATIIGPNC 130 (297)
T ss_dssp CEEECSSS
T ss_pred CEEEcCCC
Confidence 98886665
No 366
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=22.18 E-value=2e+02 Score=29.04 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=48.5
Q ss_pred CCCCEEEEcCCCCcch-------HHHHhhCCCCeEEeeeec-CCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCC
Q 012238 175 FPGAKVLISSPTWGNH-------KNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP 246 (467)
Q Consensus 175 ~~gd~Vlv~~P~y~~~-------~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~ 246 (467)
.++|.|++....+++. .+.+...|++++...... .-..--|.++|...++...++..+.++ ..
T Consensus 337 ~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvH--Ge------- 407 (562)
T 3bk2_A 337 KPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWH--GE------- 407 (562)
T ss_dssp CTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEES--BC-------
T ss_pred CCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEEc--CC-------
Confidence 5889999998777654 233446788776432100 112335788888887764455444442 22
Q ss_pred CHHHHHHHHHHHHhcCC
Q 012238 247 TPEQWEKIADVIQEKNH 263 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~ 263 (467)
...+.++++++++.|+
T Consensus 408 -~~~~~~~~~~~~~~g~ 423 (562)
T 3bk2_A 408 -VRHQMNFKWLAESMSR 423 (562)
T ss_dssp -HHHHHHHHHHHHTSSS
T ss_pred -HHHHHHHHHHHHHcCC
Confidence 4567788888888764
No 367
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=22.15 E-value=49 Score=31.55 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=42.0
Q ss_pred HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238 191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (467)
Q Consensus 191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li 266 (467)
...+..++.++..+.+.++.+|.+..+.+.+..... ..+ ... ...+.+..|+.+|+++|++.|+++|+-||
T Consensus 39 id~mA~~KlN~lH~HltDdq~~rle~~~~~~~~~~~~~~~~g--~~~---~~~~~~g~YT~~di~eiv~YA~~rgI~VI 112 (367)
T 1yht_A 39 IDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDG--IYI---NPYTGKPFLSYRQLDDIKAYAKAKGIELI 112 (367)
T ss_dssp HHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTS--CEE---CTTTCCEEBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHcCCcEEEEEEEcCCCceeeecchhhhhhhhccccCC--CcC---CCCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 344556777877777766556666543221111000 000 010 01222457999999999999999999888
No 368
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=21.99 E-value=2e+02 Score=25.42 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=45.9
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
.|+++++-... ...+...|.+|++..-.-....... +..|.++..+..+ --|.+.+++.+++. -.+.
T Consensus 27 TGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D-----l~~~~~v~~~~~~~~~~~g~i 100 (267)
T 1vl8_A 27 TGGSRGLGFGI-AQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCD-----VSNYEEVKKLLEAVKEKFGKL 100 (267)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred ECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 56666666541 1223447888877643322222222 2236666666552 13556665555421 1234
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++.+......+. ..+.++|+++.+.
T Consensus 101 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 129 (267)
T 1vl8_A 101 DTVVNAAGINRRHPAEEFPLDEFRQVIEV 129 (267)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHH
Confidence 46665444333222 2466777776553
No 369
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=21.94 E-value=1.5e+02 Score=27.20 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=47.9
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCC-------C-----c---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPT-------W-----G---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~-------y-----~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
..||++++-... ...+...|.+|++..-. + . .....++..|.++..+..+ --|.+.+++
T Consensus 51 VTGas~GIG~ai-a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~ 124 (317)
T 3oec_A 51 ITGAARGQGRTH-AVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQAD-----VRDLASLQA 124 (317)
T ss_dssp ESSCSSHHHHHH-HHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECC-----TTCHHHHHH
T ss_pred EeCCCcHHHHHH-HHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECC-----CCCHHHHHH
Confidence 366666666541 12334578888875322 1 0 1112234457777776653 135566555
Q ss_pred HHHcC---CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 222 DIKAA---PGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 222 ~l~~~---~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++. -.+..+++.+....+.+. ..+.++|+++.+.
T Consensus 125 ~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~v 165 (317)
T 3oec_A 125 VVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQT 165 (317)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 55421 123446665544333332 4467777777553
No 370
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=21.91 E-value=2.5e+02 Score=24.82 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=51.1
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHc---CC
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~ 227 (467)
.+++ .||+.++-.+. ...+...|.+|++..-.-...... ...+.+...+..+ .-|.+.+++.+++ .-
T Consensus 4 ~vlV---TGas~GIG~ai-a~~la~~Ga~V~~~~~~~~~~~~~-~~~~~~~~~~~~D-----v~~~~~v~~~v~~~~~~~ 73 (247)
T 3ged_A 4 GVIV---TGGGHGIGKQI-CLDFLEAGDKVCFIDIDEKRSADF-AKERPNLFYFHGD-----VADPLTLKKFVEYAMEKL 73 (247)
T ss_dssp EEEE---ESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHH-HTTCTTEEEEECC-----TTSHHHHHHHHHHHHHHH
T ss_pred EEEE---ecCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHH-HHhcCCEEEEEec-----CCCHHHHHHHHHHHHHHc
Confidence 3555 45555566541 223455888888865432222222 2345566666552 1345555554433 11
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
.+..+++.+-..++.+. .++.++|+++.++-
T Consensus 74 g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vN 106 (247)
T 3ged_A 74 QRIDVLVNNACRGSKGILSSLLYEEFDYILSVG 106 (247)
T ss_dssp SCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHH
Confidence 34456665544444443 35778888886643
No 371
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=21.85 E-value=2.5e+02 Score=24.57 Aligned_cols=95 Identities=9% Similarity=0.015 Sum_probs=49.1
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEc-CCCCcch---HHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCC
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLIS-SPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGG 229 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~-~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~ 229 (467)
..||++++-... ...+...|.+|++. .-.-... ...++..|.++..+..+ --|.+.+++.+++. -.+
T Consensus 9 VTGas~gIG~ai-a~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~ 82 (258)
T 3oid_A 9 VTGSSRGVGKAA-AIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKAN-----VGQPAKIKEMFQQIDETFGR 82 (258)
T ss_dssp ESSCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHSC
T ss_pred EecCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcC-----CCCHHHHHHHHHHHHHHcCC
Confidence 356666666541 12234578888774 4332222 22334456677777653 13556666555431 123
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 230 ~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
..+++.+....+.+. ..+.++|++..++
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~v 112 (258)
T 3oid_A 83 LDVFVNNAASGVLRPVMELEETHWDWTMNI 112 (258)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 456665544333332 3567777776553
No 372
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=21.70 E-value=1.9e+02 Score=27.00 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=44.9
Q ss_pred CCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 012238 185 PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHI 264 (467)
Q Consensus 185 P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~ 264 (467)
+.|..+..++..-.++++.+-+.+ ..-.+...++++ .+.-+++ .-|.+ .+.++.++++++++++|+.
T Consensus 52 ~~~~~~~~ll~~~~~D~V~i~tp~----~~h~~~~~~al~---aGkhVl~----EKP~a--~~~~ea~~l~~~a~~~g~~ 118 (359)
T 3e18_A 52 KIYESYEAVLADEKVDAVLIATPN----DSHKELAISALE---AGKHVVC----EKPVT--MTSEDLLAIMDVAKRVNKH 118 (359)
T ss_dssp CBCSCHHHHHHCTTCCEEEECSCG----GGHHHHHHHHHH---TTCEEEE----ESSCC--SSHHHHHHHHHHHHHHTCC
T ss_pred ceeCCHHHHhcCCCCCEEEEcCCc----HHHHHHHHHHHH---CCCCEEe----eCCCc--CCHHHHHHHHHHHHHhCCe
Confidence 356667777766666666665421 123455556665 3444444 34543 4588888899999988888
Q ss_pred eEEecc
Q 012238 265 PFFDVA 270 (467)
Q Consensus 265 li~Dea 270 (467)
+.+-..
T Consensus 119 ~~v~~~ 124 (359)
T 3e18_A 119 FMVHQN 124 (359)
T ss_dssp EEEECG
T ss_pred EEEEee
Confidence 776544
No 373
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=21.62 E-value=68 Score=34.57 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 248 PEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 248 ~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
.++++++++.|+++|+-||.|-+|-+..
T Consensus 369 ~~efk~lV~~~H~~GI~VILDvV~NH~a 396 (877)
T 3faw_A 369 IAELKQLIHDIHKRGMGVILDVVYNHTA 396 (877)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccc
Confidence 7999999999999999999999987655
No 374
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=21.58 E-value=78 Score=31.97 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.+++++|++.|+++|+-||.|-++-+...
T Consensus 78 t~~df~~Lv~~aH~~Gi~VilD~V~NHts~ 107 (557)
T 1zja_A 78 TMEDFDRLMAELKKRGMRLMVDVVINHSSD 107 (557)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 489999999999999999999999877653
No 375
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=21.42 E-value=1.8e+02 Score=25.33 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCC-c---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTW-G---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y-~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
.||++++-... ...+...|.+|++..-.- . .....++..|.++..+..+ --|.+.+++.+++. -.+.
T Consensus 10 TGas~gIG~~i-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~i 83 (246)
T 3osu_A 10 TGASRGIGRSI-ALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQAN-----VADADEVKAMIKEVVSQFGSL 83 (246)
T ss_dssp TTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred ECCCChHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcc-----CCCHHHHHHHHHHHHHHcCCC
Confidence 56666666541 123345788887643222 1 1222344567777776653 13556665555431 1234
Q ss_pred EEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q 012238 231 FILLHGCAHNPTG--IDPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~NPTG--~~~~~~~l~~l~~~ 257 (467)
.+++++....+.+ ...+.++|++..+.
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~v 112 (246)
T 3osu_A 84 DVLVNNAGITRDNLLMRMKEQEWDDVIDT 112 (246)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 5666555443333 23467777777553
No 376
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=21.35 E-value=2.3e+02 Score=25.91 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=43.8
Q ss_pred CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
.|..+..+++....+++.+-+.+. .-.+...++++ .+..+++ ..|.+ .+.++.++|.++++++|+.+
T Consensus 50 ~~~~~~~~l~~~~~D~V~i~tp~~----~h~~~~~~al~---~Gk~v~~----ekP~~--~~~~~~~~l~~~a~~~g~~~ 116 (332)
T 2glx_A 50 SVTSVEELVGDPDVDAVYVSTTNE----LHREQTLAAIR---AGKHVLC----EKPLA--MTLEDAREMVVAAREAGVVL 116 (332)
T ss_dssp CBSCHHHHHTCTTCCEEEECSCGG----GHHHHHHHHHH---TTCEEEE----CSSSC--SSHHHHHHHHHHHHHHTCCE
T ss_pred ccCCHHHHhcCCCCCEEEEeCChh----HhHHHHHHHHH---CCCeEEE----eCCCc--CCHHHHHHHHHHHHHcCCEE
Confidence 455566666554566666654211 23455556666 3444444 44544 46888999999999999887
Q ss_pred EEecc
Q 012238 266 FFDVA 270 (467)
Q Consensus 266 i~Dea 270 (467)
.+...
T Consensus 117 ~~~~~ 121 (332)
T 2glx_A 117 GTNHH 121 (332)
T ss_dssp EECCC
T ss_pred EEeeh
Confidence 76443
No 377
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=21.23 E-value=2.9e+02 Score=23.99 Aligned_cols=37 Identities=24% Similarity=0.153 Sum_probs=25.6
Q ss_pred ccCceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcc
Q 012238 148 KEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN 189 (467)
Q Consensus 148 ~~~~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~ 189 (467)
+..+|++ ..||.-|...+ ..++..|..|.+.+|....
T Consensus 30 ~gk~VLV--VGgG~va~~ka---~~Ll~~GA~VtVvap~~~~ 66 (223)
T 3dfz_A 30 KGRSVLV--VGGGTIATRRI---KGFLQEGAAITVVAPTVSA 66 (223)
T ss_dssp TTCCEEE--ECCSHHHHHHH---HHHGGGCCCEEEECSSCCH
T ss_pred CCCEEEE--ECCCHHHHHHH---HHHHHCCCEEEEECCCCCH
Confidence 3457877 78887777775 3335567888888887653
No 378
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=21.17 E-value=4.8e+02 Score=24.55 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEec
Q 012238 242 TGIDPTPEQWEKIADVIQEKNHIPFFDV 269 (467)
Q Consensus 242 TG~~~~~~~l~~l~~~~~~~~~~li~De 269 (467)
||..++.+.+.+|+ +-.|+.=|=|.
T Consensus 195 Tg~~ls~e~l~~La---~~pnIvGIKds 219 (360)
T 4dpp_A 195 TGQDIPPRAIFKLS---QNPNLAGVKEC 219 (360)
T ss_dssp HSCCCCHHHHHHHT---TSTTEEEEEEC
T ss_pred cCCCCCHHHHHHHh---cCCCEEEEEeC
Confidence 78889888777763 32344444443
No 379
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=21.14 E-value=1.8e+02 Score=25.48 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=47.0
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 157 t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
..||++++-... ...+...|.+|++..-.-..... .+...|.++..+..+ --|.+.+.+.+++. ..+.
T Consensus 34 ITGas~gIG~~l-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~~~~~~~~~g~i 107 (262)
T 3rkr_A 34 VTGASRGIGAAI-ARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACD-----LSHSDAIAAFATGVLAAHGRC 107 (262)
T ss_dssp ESSTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred EECCCChHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEec-----CCCHHHHHHHHHHHHHhcCCC
Confidence 366667666541 12234578888876543332222 233456666666552 13556665555431 1234
Q ss_pred EEEEeCCCC-CCCCC--CCCHHHHHHHHH
Q 012238 231 FILLHGCAH-NPTGI--DPTPEQWEKIAD 256 (467)
Q Consensus 231 ~~i~i~~p~-NPTG~--~~~~~~l~~l~~ 256 (467)
.+++++... .+.+. ..+.+++++..+
T Consensus 108 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 136 (262)
T 3rkr_A 108 DVLVNNAGVGWFGGPLHTMKPAEWDALIA 136 (262)
T ss_dssp SEEEECCCCCCCSSCGGGSCHHHHHHHHH
T ss_pred CEEEECCCccCCCCCcccCCHHHHHHHHH
Confidence 466655443 22222 246677776654
No 380
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.12 E-value=1.5e+02 Score=26.36 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=46.1
Q ss_pred CCEEEEcCCCCc-------chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHH
Q 012238 177 GAKVLISSPTWG-------NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPE 249 (467)
Q Consensus 177 gd~Vlv~~P~y~-------~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~ 249 (467)
+.+|++..+.-. -...+++..|++++.+... ..++.+.+.+.+. ++.+|.++.-..++ ..
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~------vp~e~l~~~~~~~--~~d~V~lS~l~~~~-----~~ 189 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD------VPAEEVLAAVQKE--KPIMLTGTALMTTT-----MY 189 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE------CCSHHHHHHHHHH--CCSEEEEECCCTTT-----TT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHHc--CCCEEEEEeeccCC-----HH
Confidence 346777665432 2345678899999988663 4667887777653 33455555443332 34
Q ss_pred HHHHHHHHHHhcC
Q 012238 250 QWEKIADVIQEKN 262 (467)
Q Consensus 250 ~l~~l~~~~~~~~ 262 (467)
.+.++++.+++.+
T Consensus 190 ~~~~~i~~l~~~~ 202 (258)
T 2i2x_B 190 AFKEVNDMLLENG 202 (258)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcC
Confidence 6888888888765
No 381
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=20.99 E-value=88 Score=30.73 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=34.9
Q ss_pred CCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeEEecc
Q 012238 211 TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA 270 (467)
Q Consensus 211 ~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li~Dea 270 (467)
+|.+|.-.+.++.. .... .++++.. .++.++++++.+.|++.|+.+++|.-
T Consensus 115 DFI~d~~Qi~ea~~-~GAD-~ILLi~a-------~l~~~~l~~l~~~a~~lgm~~LvEvh 165 (452)
T 1pii_A 115 DFIIDPYQIYLARY-YQAD-ACLLMLS-------VLDDDQYRQLAAVAHSLEMGVLTEVS 165 (452)
T ss_dssp SCCCSHHHHHHHHH-TTCS-EEEEETT-------TCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred eccCCHHHHHHHHH-cCCC-EEEEEcc-------cCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 47788887777444 2222 3333332 46678999999999999999998743
No 382
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=20.98 E-value=2.6e+02 Score=24.84 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=48.6
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCcE
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSF 231 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~ 231 (467)
.||++++-... ...+...|.+|++..-.-.... ..++..|.++..+..+ --|.+.+++.+++. -.+..
T Consensus 38 TGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-----l~d~~~v~~~~~~~~~~~g~iD 111 (276)
T 3r1i_A 38 TGASTGIGKKV-ALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCD-----VTQPDQVRGMLDQMTGELGGID 111 (276)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECC-----TTCHHHHHHHHHHHHHHHSCCS
T ss_pred eCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC-----CCCHHHHHHHHHHHHHHcCCCC
Confidence 56666666541 1223457888877654333222 2334456677766653 13556666555431 12344
Q ss_pred EEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 232 ILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 232 ~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
+++.+....+.+. ..+.++|+++.+.
T Consensus 112 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 139 (276)
T 3r1i_A 112 IAVCNAGIVSVQAMLDMPLEEFQRIQDT 139 (276)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 6665544333322 3467777776553
No 383
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=20.98 E-value=1.9e+02 Score=25.24 Aligned_cols=97 Identities=13% Similarity=0.017 Sum_probs=46.5
Q ss_pred ceeeeecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---C
Q 012238 151 RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---P 227 (467)
Q Consensus 151 ~i~~~~t~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~ 227 (467)
.+++ .|+++++-... ...+...|.+|++..-.-.......+..|.++..+..+ .-|.+.+++.+++. -
T Consensus 7 ~vlV---TGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~~~~~~~~~~~~~ 77 (254)
T 1hdc_A 7 TVII---TGGARGLGAEA-ARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLD-----VTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp EEEE---ETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECC-----TTCHHHHHHHHHHHHHHH
T ss_pred EEEE---ECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEec-----CCCHHHHHHHHHHHHHHc
Confidence 4555 56666665541 12234478888775433222233334445455555542 13556665555421 1
Q ss_pred CCcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 012238 228 GGSFILLHGCAHNPTGI--DPTPEQWEKIAD 256 (467)
Q Consensus 228 ~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~ 256 (467)
.+..+++.+....+.+. ..+.+++++..+
T Consensus 78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~ 108 (254)
T 1hdc_A 78 GSVDGLVNNAGISTGMFLETESVERFRKVVE 108 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 23456665443322221 246677766644
No 384
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=20.96 E-value=1.5e+02 Score=26.37 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=47.9
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEc-CCCCc---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcC---CCCc
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLIS-SPTWG---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGS 230 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~-~P~y~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~ 230 (467)
.||++++-.+. ...+...|.+|++. ...-. .....++..|.++..+..+ --|.+.+++.+++. -.+.
T Consensus 37 TGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~i 110 (271)
T 3v2g_A 37 TGGSRGIGAAI-AKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRAD-----NRDAEAIEQAIRETVEALGGL 110 (271)
T ss_dssp ETTTSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred eCCCcHHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECC-----CCCHHHHHHHHHHHHHHcCCC
Confidence 56666665541 12234578888775 22211 1223344557777777663 13566666555431 1244
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 231 FILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 231 ~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++.+......+. ..+.++|++..+.
T Consensus 111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~v 139 (271)
T 3v2g_A 111 DILVNSAGIWHSAPLEETTVADFDEVMAV 139 (271)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 56665443332222 3467777777553
No 385
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=20.90 E-value=5.4e+02 Score=25.46 Aligned_cols=102 Identities=9% Similarity=-0.012 Sum_probs=56.2
Q ss_pred cccCceeeeecCCchhHHHHHHHHHH-HhCCCCE-EEEc-CCC----------------CcchHHHHhhCCCCeEEeeee
Q 012238 147 LKEQRVATVQGLSGTGSLRLAAALIE-RYFPGAK-VLIS-SPT----------------WGNHKNIFNDARVPWSEYRYY 207 (467)
Q Consensus 147 ~~~~~i~~~~t~ggt~al~l~~~~l~-~~~~gd~-Vlv~-~P~----------------y~~~~~~~~~~G~~~~~v~~~ 207 (467)
+.++.+++ ..||+++|-.. +.. +...|.+ |++. .-. -......++..|.++..+.++
T Consensus 248 ~~~~~~vL--ITGgsgGIG~~--lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~D 323 (525)
T 3qp9_A 248 WQADGTVL--VTGAEEPAAAE--AARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCD 323 (525)
T ss_dssp SCTTSEEE--ESSTTSHHHHH--HHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECC
T ss_pred ecCCCEEE--EECCCCcHHHH--HHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECC
Confidence 34556666 57788877764 222 2335654 5443 211 122233345568888777763
Q ss_pred cCCCCCCChhhHHHHHHcCC--CCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 208 DPKTVGLDFEGMIADIKAAP--GGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 208 ~~~~~~~d~~~l~~~l~~~~--~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
--|.+.+.+.+++.. .+..+++++..-...+. ..+.++++++.+.
T Consensus 324 -----vtd~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~ 372 (525)
T 3qp9_A 324 -----LTDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTA 372 (525)
T ss_dssp -----TTSHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHH
Confidence 246778888777531 24556665554433333 3567777777553
No 386
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=20.88 E-value=1.2e+02 Score=26.90 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=46.0
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCC-------C-----cc---hHHHHhhCCCCeEEeeeecCCCCCCChhhHHHH
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPT-------W-----GN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD 222 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~-------y-----~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 222 (467)
.|+++++-... ...+...|.+|++..-. | .. ....++..|.++..+..+ --|.+.+++.
T Consensus 19 TGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----~~~~~~v~~~ 92 (278)
T 3sx2_A 19 TGAARGQGRAH-AVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQAD-----VRDRESLSAA 92 (278)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECC-----TTCHHHHHHH
T ss_pred ECCCChHHHHH-HHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCC-----CCCHHHHHHH
Confidence 56666665541 12234578888775422 1 11 112233456677776653 1356666665
Q ss_pred HHcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 012238 223 IKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIAD 256 (467)
Q Consensus 223 l~~~---~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~ 256 (467)
+++. -.+..+++++....+.+. +.++|++..+
T Consensus 93 ~~~~~~~~g~id~lv~nAg~~~~~~--~~~~~~~~~~ 127 (278)
T 3sx2_A 93 LQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVID 127 (278)
T ss_dssp HHHHHHHHCCCCEEEECCCCCCCSS--THHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCC--CHHHHHHHHH
Confidence 5431 124456665554443333 5677777654
No 387
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=20.67 E-value=83 Score=31.87 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 91 t~~df~~lv~~aH~~Gi~VilD~V~NH~s~ 120 (570)
T 1m53_A 91 TMEDFDSLVAEMKKRNMRLMIDVVINHTSD 120 (570)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 489999999999999999999999877653
No 388
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=20.65 E-value=1.7e+02 Score=26.67 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred CcEEEEeCCCCCC--CCCCCCHHHHHHHHHHHHh-cCCeeEEec
Q 012238 229 GSFILLHGCAHNP--TGIDPTPEQWEKIADVIQE-KNHIPFFDV 269 (467)
Q Consensus 229 ~~~~i~i~~p~NP--TG~~~~~~~l~~l~~~~~~-~~~~li~De 269 (467)
.+.+++ |+| ||..++.+.+.+| +++ .|+.=|=|.
T Consensus 127 lPiilY----n~P~~tg~~l~~~~~~~L---a~~~pnIvgiK~s 163 (292)
T 2vc6_A 127 IPIIVY----NIPGRSAIEIHVETLARI---FEDCPNVKGVXDA 163 (292)
T ss_dssp SCEEEE----ECHHHHSCCCCHHHHHHH---HHHCTTEEEEEEC
T ss_pred CCEEEE----eCccccCcCCCHHHHHHH---HhhCCCEEEEecC
Confidence 444544 455 7999999877777 442 344444453
No 389
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=20.53 E-value=84 Score=32.12 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~ 276 (467)
+.++++++++.|+++|+-||.|-++-+...
T Consensus 197 t~~df~~Lv~~aH~~Gi~VilD~V~NH~~~ 226 (601)
T 3edf_A 197 SNEDFVRLSTEARKRGMGLIQDVVLSHIGK 226 (601)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHcCCEEEEEECCcccCC
Confidence 489999999999999999999999866543
No 390
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=20.38 E-value=96 Score=31.87 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASG 277 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~~~ 277 (467)
+.++++++++.|+++|+-||.|-+|.++..+
T Consensus 201 ~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~ 231 (618)
T 3m07_A 201 TPDDFKAFIDAAHGYGLSVVLDIVLNHFGPE 231 (618)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred CHHHHHHHHHHHHHCCCEEEEeecCccCCCC
Confidence 5899999999999999999999999887643
No 391
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=20.30 E-value=72 Score=31.09 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhcCCeeEEeccCCCCC
Q 012238 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFA 275 (467)
Q Consensus 247 ~~~~l~~l~~~~~~~~~~li~Deay~~~~ 275 (467)
+.++++++++.|+++|+-||.|-++-+..
T Consensus 82 t~~~~~~lv~~~h~~Gi~vi~D~V~NH~~ 110 (449)
T 3dhu_A 82 TLADFKALTDRAHELGMKVMLDIVYNHTS 110 (449)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcCc
Confidence 48999999999999999999999975554
No 392
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=20.28 E-value=2.7e+02 Score=25.05 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=46.2
Q ss_pred hHHHHhhCCCCeEEeeeecCC-CCCCChhhHHHHHHcCCCCcEEEEeCCCC---CCCCCC-------------CCHHHHH
Q 012238 190 HKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAH---NPTGID-------------PTPEQWE 252 (467)
Q Consensus 190 ~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~i~i~~p~---NPTG~~-------------~~~~~l~ 252 (467)
....++.+|++.+++...++. .+..+++.+.+.+++. +-.+..+..+. |.+.-. -..+.++
T Consensus 34 ~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~--GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 111 (303)
T 3l23_A 34 NLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDA--GLKIISSHVNPVDTSISDPFKAMIFKYSKEVTPKIMEYWK 111 (303)
T ss_dssp HHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHT--TCEEEEEECCCBCTTCSSTTTTBCCSCCTTTHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHc--CCeEEEEecccccccccCcccccccccchhhHHHHHHHHH
Confidence 344566789988887543221 2346789999998863 43444333332 221110 1145688
Q ss_pred HHHHHHHhcCCeeEEe
Q 012238 253 KIADVIQEKNHIPFFD 268 (467)
Q Consensus 253 ~l~~~~~~~~~~li~D 268 (467)
+.+++|++.|+..|+=
T Consensus 112 ~~i~~A~~lG~~~v~~ 127 (303)
T 3l23_A 112 ATAADHAKLGCKYLIQ 127 (303)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8999999998866653
No 393
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=20.28 E-value=1.5e+02 Score=26.46 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=46.3
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCC--------C-----c---chHHHHhhCCCCeEEeeeecCCCCCCChhhHHH
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPT--------W-----G---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~--------y-----~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 221 (467)
.|+++++-... ...+...|.+|++..-. | . .....++..|.++..+..+ --|.+.+++
T Consensus 21 TGas~gIG~a~-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~~~~~v~~ 94 (280)
T 3pgx_A 21 TGAARGQGRSH-AVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLD-----VRDDAALRE 94 (280)
T ss_dssp ESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECC-----TTCHHHHHH
T ss_pred ECCCcHHHHHH-HHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcC-----CCCHHHHHH
Confidence 56666666541 12334578888875421 1 0 1122334456666666552 135555555
Q ss_pred HHHcC---CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 222 DIKAA---PGGSFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 222 ~l~~~---~~~~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
.+++. -.+..+++.+....+.+. ..+.++|++..+.
T Consensus 95 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~ 135 (280)
T 3pgx_A 95 LVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGV 135 (280)
T ss_dssp HHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhh
Confidence 55421 123446665444333222 2467777776543
No 394
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=20.23 E-value=2.2e+02 Score=26.46 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
.|..+..++..-.++++.+.+.+ ..-.+...++++ .+..+++ .-|-+ .+.++.++|++.|+++|+.+
T Consensus 53 ~~~~~~~ll~~~~~D~V~i~tp~----~~h~~~~~~al~---aGk~Vl~----EKP~a--~~~~e~~~l~~~a~~~g~~~ 119 (349)
T 3i23_A 53 FTADLNELLTDPEIELITICTPA----HTHYDLAKQAIL---AGKSVIV----EKPFC--DTLEHAEELFALGQEKGVVV 119 (349)
T ss_dssp EESCTHHHHSCTTCCEEEECSCG----GGHHHHHHHHHH---TTCEEEE----CSCSC--SSHHHHHHHHHHHHHTTCCE
T ss_pred EECCHHHHhcCCCCCEEEEeCCc----HHHHHHHHHHHH---cCCEEEE----ECCCc--CCHHHHHHHHHHHHHcCCeE
Confidence 34566666666566777765521 134455666666 3444444 44533 46888999999999999888
Q ss_pred EEecc
Q 012238 266 FFDVA 270 (467)
Q Consensus 266 i~Dea 270 (467)
.+...
T Consensus 120 ~v~~~ 124 (349)
T 3i23_A 120 MPYQN 124 (349)
T ss_dssp EECCG
T ss_pred EEEec
Confidence 76433
No 395
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.20 E-value=2.6e+02 Score=24.57 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh---h-CCC-CeEEeeeecCCCCCCChhhHHHHHHcC---CCC
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN---D-ARV-PWSEYRYYDPKTVGLDFEGMIADIKAA---PGG 229 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~~~~~~~~---~-~G~-~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~ 229 (467)
.|+++++-... ...+...|.+|++..-.-.......+ . .+. ++..+..+ --|.+.+++.+++. -.+
T Consensus 14 TGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-----v~~~~~v~~~~~~~~~~~g~ 87 (265)
T 3lf2_A 14 TGGSSGIGLAT-VELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCD-----VLDALQVRAFAEACERTLGC 87 (265)
T ss_dssp ETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECC-----TTCHHHHHHHHHHHHHHHCS
T ss_pred eCCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCC-----CCCHHHHHHHHHHHHHHcCC
Confidence 55666665541 12234578888876543322222221 1 333 36665552 13555555554321 123
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHHH
Q 012238 230 SFILLHGCAHNPTGI--DPTPEQWEKIADVI 258 (467)
Q Consensus 230 ~~~i~i~~p~NPTG~--~~~~~~l~~l~~~~ 258 (467)
..+++.+....+.+. ..+.++|++..+.-
T Consensus 88 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N 118 (265)
T 3lf2_A 88 ASILVNNAGQGRVSTFAETTDEAWSEELQLK 118 (265)
T ss_dssp CSEEEECCCCCCCBCTTTCCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHH
Confidence 446665554433332 45678888776644
No 396
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=20.14 E-value=2.6e+02 Score=25.60 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=43.7
Q ss_pred CcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCeeE
Q 012238 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF 266 (467)
Q Consensus 187 y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~li 266 (467)
|..+..++....++++.+-+.+ ..-.+...++++ .+..+++ ..|-+ .+.++.++|++.++++|+.+.
T Consensus 56 ~~~~~~ll~~~~~D~V~i~tp~----~~h~~~~~~al~---aGk~Vl~----EKP~a--~~~~e~~~l~~~a~~~~~~~~ 122 (329)
T 3evn_A 56 YDKLEDMLADESIDVIYVATIN----QDHYKVAKAALL---AGKHVLV----EKPFT--LTYDQANELFALAESCNLFLM 122 (329)
T ss_dssp ESCHHHHHTCTTCCEEEECSCG----GGHHHHHHHHHH---TTCEEEE----ESSCC--SSHHHHHHHHHHHHHTTCCEE
T ss_pred cCCHHHHhcCCCCCEEEECCCc----HHHHHHHHHHHH---CCCeEEE----ccCCc--CCHHHHHHHHHHHHHcCCEEE
Confidence 4556666655556666665421 123455556666 3444544 34543 468899999999999998887
Q ss_pred Eecc
Q 012238 267 FDVA 270 (467)
Q Consensus 267 ~Dea 270 (467)
+-..
T Consensus 123 v~~~ 126 (329)
T 3evn_A 123 EAQK 126 (329)
T ss_dssp EECS
T ss_pred EEEc
Confidence 6544
No 397
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=20.10 E-value=3.1e+02 Score=25.12 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=45.4
Q ss_pred CCcchHHHHhhCCCCeEEeeeecCCCCCCChhhHHHHHHcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCCee
Q 012238 186 TWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP 265 (467)
Q Consensus 186 ~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~i~~p~NPTG~~~~~~~l~~l~~~~~~~~~~l 265 (467)
.|..+..+++...++++.+-+.+ ..-.+...++++ .+.-+++ .=|.. .+.++.++|++.++++|+.+
T Consensus 54 ~~~~~~~ll~~~~~D~V~i~tp~----~~h~~~~~~al~---aGkhVl~----EKP~a--~~~~e~~~l~~~a~~~g~~~ 120 (336)
T 2p2s_A 54 FAASAEQLITDASIDLIACAVIP----CDRAELALRTLD---AGKDFFT----AKPPL--TTLEQLDAVQRRVAETGRKF 120 (336)
T ss_dssp BCSCHHHHHTCTTCCEEEECSCG----GGHHHHHHHHHH---TTCEEEE----CSSCC--SCHHHHHHHHHHHHHHCCCE
T ss_pred ccCCHHHHhhCCCCCEEEEeCCh----hhHHHHHHHHHH---CCCcEEE----eCCCC--CCHHHHHHHHHHHHHcCCEE
Confidence 45667777666567777765521 123455556666 3444444 33433 46788999999999999888
Q ss_pred EEecc
Q 012238 266 FFDVA 270 (467)
Q Consensus 266 i~Dea 270 (467)
.+.-.
T Consensus 121 ~v~~~ 125 (336)
T 2p2s_A 121 AVYFN 125 (336)
T ss_dssp EECCT
T ss_pred EEeec
Confidence 76544
No 398
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=20.06 E-value=2.7e+02 Score=24.73 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=46.6
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCCc-chHHH---Hhh-CCCCeEEeeeecCCCCCCChhhHHHHHHc---CCCC
Q 012238 158 LSGTGSLRLAAALIERYFPGAKVLISSPTWG-NHKNI---FND-ARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGG 229 (467)
Q Consensus 158 ~ggt~al~l~~~~l~~~~~gd~Vlv~~P~y~-~~~~~---~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~ 229 (467)
.||++++-... ...+...|.+|++..-.-. ..... ++. .+.++..+..+ --|.+.+++.+++ .-.+
T Consensus 31 TGas~GIG~~i-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-----v~d~~~v~~~~~~~~~~~g~ 104 (281)
T 3v2h_A 31 TGSTSGIGLAI-ARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPAD-----MTKPSEIADMMAMVADRFGG 104 (281)
T ss_dssp ETCSSHHHHHH-HHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCC-----TTCHHHHHHHHHHHHHHTSS
T ss_pred eCCCcHHHHHH-HHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCC-----CCCHHHHHHHHHHHHHHCCC
Confidence 55666665541 1233457888887654221 11121 222 25566666542 1355666555542 1124
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 012238 230 SFILLHGCAHNPTGI--DPTPEQWEKIADV 257 (467)
Q Consensus 230 ~~~i~i~~p~NPTG~--~~~~~~l~~l~~~ 257 (467)
..+++.+....+.+. ..+.++|++..+.
T Consensus 105 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 134 (281)
T 3v2h_A 105 ADILVNNAGVQFVEKIEDFPVEQWDRIIAV 134 (281)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 446665544433333 2467777777553
Done!