BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012241
         (467 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
           Phosphoinositide Phosphatase Function
          Length = 505

 Score =  174 bits (441), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 199/460 (43%), Gaps = 102/460 (22%)

Query: 11  IACL--YVCMLLGSYLIVITERECVGSYLGHPIYKVASLKILPCDHSLNNSSAEQKKVEA 68
           IA L  ++ + L  Y I+    E  G + GH  Y+V    I+       NS  + +  EA
Sbjct: 56  IASLMGFIKLKLNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKF---NSRIDSE--EA 110

Query: 69  EFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAEPRFLWNNYLMEAL 128
           E+  LL+L  +    YFSY  +LT S+QR   +G  +     W+ A+ RF WN+YL E L
Sbjct: 111 EYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPAAS----WKTADERFFWNHYLTEDL 166

Query: 129 -----IDNKLDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGADSDG 183
                 D ++D F+ PVI G        +    I + LI RR   R GTR +RRG D DG
Sbjct: 167 RNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDG 226

Query: 184 YVANFVETEQVVQMNG------FMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAEEAPR 237
            V NF ETEQ++           + SF+Q RGS+P  W +  +L YKP   ++  E +  
Sbjct: 227 NVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPN--LVLGENSLD 284

Query: 238 VVERHFLDLRKKYGNVLAVDLVNKHGGEGRLCENFGNAMQNVASDDIRYLHFDFHRICGH 297
             ++HF   ++ YG+   V+LVN+ G E  + E + + +  +    I Y++FDFH  C  
Sbjct: 285 ATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYESVVHALNDPKIHYVYFDFHHECRK 344

Query: 298 VHFERLSILFEQI-------EDFLEK----NG---------------------------- 318
           + + R+ +L + +       EDF  K    NG                            
Sbjct: 345 MQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHSVVRTNCMDCLDRTNVVQ 404

Query: 319 -----YLLLNEKDNVDLVCVPVCCRDNVDL------------------------------ 343
                ++L  E ++ D+V       DN  L                              
Sbjct: 405 SVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAVSVAYSGTGALKTDFT 464

Query: 344 ----RTMQGILNDGWNALARYYLNNFCDGTKQDAIDLLQG 379
               RT  G  ND  N+ +RYY NN+ DG +QD+ DL  G
Sbjct: 465 RTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYDLFLG 504


>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
           Thyroid- Stimulating Autoantibody
 pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
           Blocking Type Tshr Autoantibody
          Length = 239

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 306 LFEQIEDFLEKNGYLLLNEKDNVDLVCVPV-----CCRDNVDLRTMQGILNDGWNALARY 360
           +F  +      + + +L   DN  +  +PV      C + + L+    + N+G+ ++  Y
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK----LYNNGFTSVQGY 174

Query: 361 YLNNFCDGTKQDAIDLLQGHYIVSVSRD 388
             N    GTK DA+ L +  Y+  + +D
Sbjct: 175 AFN----GTKLDAVYLNKNKYLTVIDKD 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,846,833
Number of Sequences: 62578
Number of extensions: 572302
Number of successful extensions: 1526
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1518
Number of HSP's gapped (non-prelim): 4
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)