Query 012241
Match_columns 467
No_of_seqs 259 out of 809
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 05:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012241.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012241hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w32a_ c.1.8.3 (A:) Xylanase 35.0 27 0.002 32.2 6.3 62 233-296 98-186 (346)
2 d1us3a2 c.1.8.3 (A:243-606) Xy 22.5 35 0.0025 31.3 4.5 60 234-295 113-196 (364)
3 d1r85a_ c.1.8.3 (A:) Xylanase 18.2 33 0.0024 32.0 3.2 60 235-295 124-199 (371)
4 d1v5ib1 d.58.3.2 (B:1-72) Prot 14.6 1.1E+02 0.0078 21.3 4.7 61 230-290 9-70 (72)
5 d1i1wa_ c.1.8.3 (A:) Xylanase 12.8 58 0.0042 29.0 3.3 59 234-294 103-177 (303)
6 d1m0ka_ f.13.1.1 (A:) Bacterio 12.6 2E+02 0.014 24.4 6.9 12 407-418 13-24 (227)
7 d1fh9a_ c.1.8.3 (A:) Xylanase 12.4 57 0.0042 28.9 3.1 81 207-294 77-174 (312)
8 d1kk1a3 c.37.1.8 (A:6-200) Ini 11.9 3.2E+02 0.024 21.4 8.5 70 237-313 118-192 (195)
9 d1va4a_ c.69.1.12 (A:) Arylest 11.8 2.2E+02 0.016 22.2 6.7 55 202-261 1-57 (271)
10 d1ta3b_ c.1.8.3 (B:) Xylanase 11.6 63 0.0046 28.7 3.1 57 235-293 101-173 (301)
No 1
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]}
Probab=35.00 E-value=27 Score=32.24 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=41.0
Q ss_pred CccHHHHHHHHHHHHHhhCC-cEEEeCccCC--------------------------CchhhHHHHHHHHHhhccCCCce
Q 012241 233 EEAPRVVERHFLDLRKKYGN-VLAVDLVNKH--------------------------GGEGRLCENFGNAMQNVASDDIR 285 (467)
Q Consensus 233 ~~~~~a~~kHF~~L~~~YG~-v~~vNLl~~~--------------------------g~E~~L~~ay~~~v~~l~~~~i~ 285 (467)
++....+++|+..+..+|+. |..-+.+|+- +++.-+.+||+.+=+. +|+.+
T Consensus 98 ~~~~~~~~~~I~~v~~ry~g~i~~WDVvNE~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yi~~aF~~Ar~~--dP~a~ 175 (346)
T d1w32a_ 98 ANFRQDFARHIDTVAAHFAGQVKSWDVVNEALFDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAA--DPTAE 175 (346)
T ss_dssp TTHHHHHHHHHHHHHHHTTTTCSEEEEEECCBCCGGGCTTCCCEETTEECCHHHHHHTSTHHHHHHHHHHHHH--CTTSE
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEEEeeeccccccCccccccccccccchhhhhccChHHHHHHHHHHHHh--CCCCE
Confidence 45578899999999999986 5444444331 1334566777776543 46778
Q ss_pred eeechhhhhhc
Q 012241 286 YLHFDFHRICG 296 (467)
Q Consensus 286 y~~fDfh~~ck 296 (467)
++.=||.-+..
T Consensus 176 L~~Ndyn~~~~ 186 (346)
T d1w32a_ 176 LYYNDFNTEEN 186 (346)
T ss_dssp EEEEESSTTSC
T ss_pred EEeccCCcccC
Confidence 77778876543
No 2
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}
Probab=22.52 E-value=35 Score=31.30 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHHhh---CCcEEEeCccC----CC-----------------chhhHHHHHHHHHhhccCCCceeeec
Q 012241 234 EAPRVVERHFLDLRKKY---GNVLAVDLVNK----HG-----------------GEGRLCENFGNAMQNVASDDIRYLHF 289 (467)
Q Consensus 234 ~~~~a~~kHF~~L~~~Y---G~v~~vNLl~~----~g-----------------~E~~L~~ay~~~v~~l~~~~i~y~~f 289 (467)
+...++++|+..+.++| |.|..-+.+|+ .+ .+.-+..||+.+-+. .+..+.+.=
T Consensus 113 ~~~~~~~~~I~~vv~ry~~~G~I~~WDVvNEp~~~~~~~~~~~~~~~~~~~~g~~~~~i~~Af~~Ar~~--~p~a~l~~n 190 (364)
T d1us3a2 113 DFLAALDTHITTIVDHYEAKGNLVSWDVVNEAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAA--DPAVILYYN 190 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCBCSSSSCCBCCTTCHHHHHTTSCSHHHHHHHHHHHHH--CTTSEEEEE
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEEEecccccCCCCcccccccchHHHHhCCchHHHHHHHHHHHHh--ccccceeec
Confidence 34578899999999999 66754444433 11 122455666655432 355666655
Q ss_pred hhhhhh
Q 012241 290 DFHRIC 295 (467)
Q Consensus 290 Dfh~~c 295 (467)
||..+.
T Consensus 191 dy~~~~ 196 (364)
T d1us3a2 191 DYNIEQ 196 (364)
T ss_dssp ESSTTS
T ss_pred cccccc
Confidence 766554
No 3
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]}
Probab=18.16 E-value=33 Score=32.01 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHhhC-CcE---EEeCc-cCCC-----------chhhHHHHHHHHHhhccCCCceeeechhhhhh
Q 012241 235 APRVVERHFLDLRKKYG-NVL---AVDLV-NKHG-----------GEGRLCENFGNAMQNVASDDIRYLHFDFHRIC 295 (467)
Q Consensus 235 ~~~a~~kHF~~L~~~YG-~v~---~vNLl-~~~g-----------~E~~L~~ay~~~v~~l~~~~i~y~~fDfh~~c 295 (467)
...++++|+..+..+|+ .|. +||=. +..+ .+.-+..+|+.+-+.. ++.++...=||.-+.
T Consensus 124 l~~~~~~~I~~v~~rY~g~I~~WDVvNE~~~~~~~~r~~~~~~~~g~dyi~~af~~A~~~~-~p~~~L~~Ndy~~~~ 199 (371)
T d1r85a_ 124 LLKRLETHIKTIVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYG-GDNIKLYMNDYNTEV 199 (371)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEEESCBCTTSSBCCCHHHHHHTTHHHHHHHHHHHHHH-CTTSEEEEEESCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEeecccCCCCcccCchhhccCcHHHHHHHHHHHHhc-CCcceeeeccccccc
Confidence 35678899999999995 565 55532 2111 2445667777765543 345555555666553
No 4
>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}
Probab=14.63 E-value=1.1e+02 Score=21.29 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=41.2
Q ss_pred cCCCccHHHHHHHHHHHHHhhCCc-EEEeCccCCCchhhHHHHHHHHHhhccCCCceeeech
Q 012241 230 LRAEEAPRVVERHFLDLRKKYGNV-LAVDLVNKHGGEGRLCENFGNAMQNVASDDIRYLHFD 290 (467)
Q Consensus 230 ~~~~~~~~a~~kHF~~L~~~YG~v-~~vNLl~~~g~E~~L~~ay~~~v~~l~~~~i~y~~fD 290 (467)
.....+..++..|.+.+.+..|.+ +..++=.=+|.=..|.+.--+.++.+++|.+.|+.=|
T Consensus 9 lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D 70 (72)
T d1v5ib1 9 FKNDVSEDKIRETKDEVIAEGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (72)
T ss_dssp ECTTCCHHHHHHHHHHHHHHTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ECCCCCHHHHHHHHHHHHhcCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence 334456678899999999999875 4444312245555666666666777777789998755
No 5
>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus aurantiacus [TaxId: 5087]}
Probab=12.82 E-value=58 Score=29.03 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHHHHhhCC-cEEEeCccC----C-----------CchhhHHHHHHHHHhhccCCCceeeechhhhh
Q 012241 234 EAPRVVERHFLDLRKKYGN-VLAVDLVNK----H-----------GGEGRLCENFGNAMQNVASDDIRYLHFDFHRI 294 (467)
Q Consensus 234 ~~~~a~~kHF~~L~~~YG~-v~~vNLl~~----~-----------g~E~~L~~ay~~~v~~l~~~~i~y~~fDfh~~ 294 (467)
+...++++|+..+..+|+. |...+.+|+ . -++.-+..+|+.+=+. +|+.+.+.=||.-+
T Consensus 103 ~~~~~~~~~i~~v~~rY~g~i~~WdVvNE~~~~~~~~r~~~~~~~~g~d~i~~af~~Ar~~--dP~a~L~~Ndy~~~ 177 (303)
T d1i1wa_ 103 TLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAA--DPNAKLYINDYNLD 177 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCSEEEEEESCBCTTSSBCCCHHHHHTCTTHHHHHHHHHHHH--CTTSEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCchhhhcccccCCCcccccCchhhcccHHHHHHHHHHHHHh--CCCCEEEeecCccc
Confidence 3456899999999999976 654444432 1 1244567777776432 45677766677644
No 6
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=12.61 E-value=2e+02 Score=24.39 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 012241 407 ALSLVLTGLFFA 418 (467)
Q Consensus 407 ~~~~~~~~~~~~ 418 (467)
..+|....+++.
T Consensus 13 ~~~m~~a~v~f~ 24 (227)
T d1m0ka_ 13 TALMGLGTLYFL 24 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 7
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]}
Probab=12.41 E-value=57 Score=28.89 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=44.6
Q ss_pred eecCCCeeeeEccCCCcCceeeecCCCccHHHHHHHHHHHHHhhCC-cE---EEeCccCC-C-------chhh-----HH
Q 012241 207 VRGSIPFLWEQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGN-VL---AVDLVNKH-G-------GEGR-----LC 269 (467)
Q Consensus 207 iRGSVPlfW~Q~~~l~~kP~i~i~~~~~~~~a~~kHF~~L~~~YG~-v~---~vNLl~~~-g-------~E~~-----L~ 269 (467)
+||-+|+.++|.+..... ...++...++..|+..+.++|+. |. ++|=-... + .... +.
T Consensus 77 v~gh~lvw~~~~p~~~~~-----~~~~~~~~~~~~~i~~v~~ry~g~i~~WdV~NEp~~~~~~~~~~~~~~~~lg~~~i~ 151 (312)
T d1fh9a_ 77 LYGHTLVWHSQLPDWAKN-----LNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADGGGRRQDSAFQQKLGNGYIE 151 (312)
T ss_dssp EEEEEEEESSSCCHHHHT-----CCHHHHHHHHHHHHHHHHHHTTTTCCEEEEEECCBCTTSSBCSSCHHHHHHCTTHHH
T ss_pred EEEecccccccccccccc-----cchHHHHHHHHHHHHHHHHhcCCCceEEEEecccccCCCCCcCCchHHHhhhHHHHH
Confidence 578877755554421110 11234567899999999999986 44 55543211 1 1222 45
Q ss_pred HHHHHHHhhccCCCceeeechhhhh
Q 012241 270 ENFGNAMQNVASDDIRYLHFDFHRI 294 (467)
Q Consensus 270 ~ay~~~v~~l~~~~i~y~~fDfh~~ 294 (467)
.+|+.+=+ .++..+.+.=||.-+
T Consensus 152 ~a~~~ar~--~dP~a~l~~n~~~~~ 174 (312)
T d1fh9a_ 152 TAFRAARA--ADPTAKLCINDYNVE 174 (312)
T ss_dssp HHHHHHHH--HCSSSEEEEEESSCS
T ss_pred HHHHHHHh--hCCCceEEeecCccc
Confidence 55555422 245666666666543
No 8
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=11.95 E-value=3.2e+02 Score=21.43 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhCC--cEEEeCccCCCchhhHHHHHH---HHHhhccCCCceeeechhhhhhcCcccchHHHHHHHHH
Q 012241 237 RVVERHFLDLRKKYGN--VLAVDLVNKHGGEGRLCENFG---NAMQNVASDDIRYLHFDFHRICGHVHFERLSILFEQIE 311 (467)
Q Consensus 237 ~a~~kHF~~L~~~YG~--v~~vNLl~~~g~E~~L~~ay~---~~v~~l~~~~i~y~~fDfh~~ck~~~~~~l~~L~~~l~ 311 (467)
+..+.|+..+...--+ ++++|-++.... ....+.|+ +.++....+++.+++. ...+-+++..|++.|.
T Consensus 118 ~~t~e~~~~~~~~~~~~iiv~inK~D~~d~-~~~~~~~~~~~~~~~~~~~~~~~iIpi------SA~~G~ni~~Ll~~I~ 190 (195)
T d1kk1a3 118 PQTREHLMALQIIGQKNIIIAQNKIELVDK-EKALENYRQIKEFIEGTVAENAPIIPI------SALHGANIDVLVKAIE 190 (195)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHHHHHHHHHHTTSTTTTCCEEEC------BTTTTBSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCccceeeeecccchhh-HHHHHHHHHHHHHhccccCCCCeEEEE------ECCCCCCHHHHHHHHH
Confidence 4467777655544334 457888876543 22333343 3343333445666653 3345578888888876
Q ss_pred HH
Q 012241 312 DF 313 (467)
Q Consensus 312 ~~ 313 (467)
+.
T Consensus 191 ~~ 192 (195)
T d1kk1a3 191 DF 192 (195)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 9
>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]}
Probab=11.77 E-value=2.2e+02 Score=22.21 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=34.0
Q ss_pred EEEEEeecCCCeeeeEccCCCcCceeeec-CCCccHHHHHHHHHHHHHhhC-CcEEEeCccC
Q 012241 202 ASFVQVRGSIPFLWEQTVDLTYKPKFEIL-RAEEAPRVVERHFLDLRKKYG-NVLAVDLVNK 261 (467)
Q Consensus 202 ~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~-~~~~~~~a~~kHF~~L~~~YG-~v~~vNLl~~ 261 (467)
+|||.+.| +.++|++.++ .|+|.+. +...+...+..-.+.|.++ | .|+++++-..
T Consensus 1 s~f~~~dG-~~l~y~~~G~---g~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~vi~~D~~G~ 57 (271)
T d1va4a_ 1 STFVAKDG-TQIYFKDWGS---GKPVLFSHGWLLDADMWEYQMEYLSSR-GYRTIAFDRRGF 57 (271)
T ss_dssp CEEECTTS-CEEEEEEESS---SSEEEEECCTTCCGGGGHHHHHHHHTT-TCEEEEECCTTS
T ss_pred CEEEeECC-eEEEEEEEcC---CCeEEEECCCCCCHHHHHHHHHHHHhC-CCEEEEEecccc
Confidence 47888888 9999998764 2556553 3333333344444445444 4 5888898764
No 10
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]}
Probab=11.60 E-value=63 Score=28.65 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHhhCC-cE---EEeCc-cCCC-----------chhhHHHHHHHHHhhccCCCceeeechhhh
Q 012241 235 APRVVERHFLDLRKKYGN-VL---AVDLV-NKHG-----------GEGRLCENFGNAMQNVASDDIRYLHFDFHR 293 (467)
Q Consensus 235 ~~~a~~kHF~~L~~~YG~-v~---~vNLl-~~~g-----------~E~~L~~ay~~~v~~l~~~~i~y~~fDfh~ 293 (467)
....+.+|+..+..+|+. |. +||=. +..+ .+.-+..+|+.+=+ . +++.+.+.=||.-
T Consensus 101 ~~~~~~~~I~~v~~rY~g~i~~WDVvNEp~~~~~~~~~~~~~~~~g~~~~~~af~~A~~-~-dP~a~l~~nd~~~ 173 (301)
T d1ta3b_ 101 LRSVMTNHINEVVGRYKGKIMHWDVVNEIFNEDGTFRNSVFYNLLGEDFVRIAFETARA-A-DPDAKLYINDYNL 173 (301)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSEEEEEESCBCTTSSBCCCHHHHHHTTHHHHHHHHHHHH-H-CTTSEEEEEESCC
T ss_pred HHHHHHHHHHHHHHhcCCCcceEEeecccccCCCCcccchhhhccchHHHHHHHHHHHH-h-CcCceeeeccccc
Confidence 457799999999999975 64 55532 1111 23345556554433 2 4556655556543
Done!