BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012242
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 154/450 (34%), Positives = 240/450 (53%), Gaps = 41/450 (9%)
Query: 31 YFDFFWLKFPPVERLFFYQICDLTWDSFSSVILPKLKHSLSLTVHHYLPLAGH-IMWPLE 89
+FDFFWL+ PP+ LFFY++ +T F+ ++P +KHSLS+T+ H+ P G +++P
Sbjct: 31 FFDFFWLRSPPINNLFFYEL-PITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAP 89
Query: 90 APKPAVYFFPNDGVSFTVAESNNADFNHLSSNGIRRAVEFRPLVP----EPSISDD-KAE 144
KP + + D V+ T AE N D N L+ N R +F LVP +SD K
Sbjct: 90 TKKPEICYVEGDSVAVTFAECN-LDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIP 148
Query: 145 VIAIQITLFPNQGFSIGISSHHAVLDGKSSTMFVKSWAYLCKQLQLQEDKNDVVLSSLPL 204
+ ++Q+TLFPNQG +IGI++HH + D + F+K+W + + E S L
Sbjct: 149 LFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDE-------SFLAN 201
Query: 205 QLTPCFDRSVIKDPKGLDVVYANHWLEFANTRSLKIIPMKQV---NSDLVRMTFEMRPED 261
P +DR +IK P LD Y L+ A S + Q SD +R TF +
Sbjct: 202 GTRPLYDR-IIKYPM-LDEAY----LKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAV 255
Query: 262 ITKLRDKIKENILQAGKSAEQLHLSTHVLACAHSFVCLVKAYGEETDTNVMFGVAADCRS 321
I +L+D++ L + E ++S+ +ACA+ + C+ K+ D +FG D R+
Sbjct: 256 INQLKDRV----LAQLPTLE--YVSSFTVACAYIWSCIAKS---RNDKLQLFGFPIDRRA 306
Query: 322 RLDPPLPVNYFGNCVGGQGTVQKASYLMGENG----EAFVAEKLSDCIKELKGDVIEGSE 377
R+ PP+P YFGNCVGG + K + L+G+ G + E L + + K V++
Sbjct: 307 RMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDM 366
Query: 378 DKFVNVLGMMKGEGLQQRILSVAGSNRFDVYGSDFGWGKPKKVEIVSIDKTGAISLAESG 437
+ F +++ EG+ + V+G+ + Y DFGWGKPKK+E VSID GAIS+
Sbjct: 367 ESFNDLVS----EGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAISINSCK 422
Query: 438 DGSGGIEVGVVLEKHQMEVFASLFTDGLQS 467
+ + +E+GV + QME F +F DGL++
Sbjct: 423 ESNEDLEIGVCISATQMEDFVHIFDDGLKA 452
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/450 (34%), Positives = 236/450 (52%), Gaps = 41/450 (9%)
Query: 31 YFDFFWLKFPPVERLFFYQICDLTWDSFSSVILPKLKHSLSLTVHHYLPLAGH-IMWPLE 89
+FDFFWL+ PP+ LFFY++ +T F+ ++P +KHSLS+T+ H+ P G +++P
Sbjct: 31 FFDFFWLRSPPINNLFFYEL-PITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAP 89
Query: 90 APKPAVYFFPNDGVSFTVAESNNADFNHLSSNGIRRAVEFRPLVP----EPSISDD-KAE 144
KP + + D V+ T AE N D N L+ N R +F LVP +SD K
Sbjct: 90 TKKPEICYVEGDSVAVTFAECN-LDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIP 148
Query: 145 VIAIQITLFPNQGFSIGISSHHAVLDGKSSTMFVKSWAYLCKQLQLQEDKNDVVLSSLPL 204
+ ++Q+TLFPNQG +IGI++HH + D + F+K+W + + E S L
Sbjct: 149 LFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDE-------SFLAN 201
Query: 205 QLTPCFDRSVIKDPKGLDVVYANHWLEFANTRSLKIIPMKQV---NSDLVRMTFEMRPED 261
P +DR +IK P LD Y L+ A S + Q SD +R TF +
Sbjct: 202 GTRPLYDR-IIKYPX-LDEAY----LKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAV 255
Query: 262 ITKLRDKIKENILQAGKSAEQLHLSTHVLACAHSFVCLVKAYGEETDTNVMFGVAADCRS 321
I +L+D++ L + E ++S+ +ACA+ + C+ K+ D +FG D R+
Sbjct: 256 INQLKDRV----LAQLPTLE--YVSSFTVACAYIWSCIAKS---RNDKLQLFGFPIDRRA 306
Query: 322 RLDPPLPVNYFGNCVGGQGTVQKASYLMGENG----EAFVAEKLSDCIKELKGDVIEGSE 377
R PP+P YFGNCVGG + K + L+G+ G + E L + + K V++
Sbjct: 307 RXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDX 366
Query: 378 DKFVNVLGMMKGEGLQQRILSVAGSNRFDVYGSDFGWGKPKKVEIVSIDKTGAISLAESG 437
+ F +++ EG V+G+ + Y DFGWGKPKK+E VSID GAIS+
Sbjct: 367 ESFNDLVS----EGXPTTXTWVSGTPKLRFYDXDFGWGKPKKLETVSIDHNGAISINSCK 422
Query: 438 DGSGGIEVGVVLEKHQMEVFASLFTDGLQS 467
+ + +E+GV + Q E F +F DGL++
Sbjct: 423 ESNEDLEIGVCISATQXEDFVHIFDDGLKA 452
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 237/451 (52%), Gaps = 42/451 (9%)
Query: 31 YFDFFWLKFPPVERLFFYQICDLTWDSFSSVILPKLKHSLSLTVHHYLPLAGHIMWPLE- 89
YFD WL F R+ FY++ ++ F I+P LK SLSLT+ +YLPLAG++ P +
Sbjct: 26 YFDHVWLAFHRXRRILFYKL-PISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDW 84
Query: 90 APKPAVYFFPNDGVSFTVAESNNADFNHLSSNGIRRAVEFRPLVPEPSISDDK-----AE 144
+ P + + + VS +ES+ DFN+L R +F VP+ + D A
Sbjct: 85 SGYPELRYVTGNSVSVIFSESD-XDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAP 143
Query: 145 VIAIQITLFPNQGFSIGISSHHAVLDGKSSTMFVKSWAYLCKQLQLQEDKNDVVLSSLPL 204
V+AIQ+TLFPN G SIG ++HH DG + FV++WA L K D+ L
Sbjct: 144 VLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNK---FGGDEQ-----FLAN 195
Query: 205 QLTPCFDRSVIKDPKGLDVVYANHWLEFANTRSLKIIPMKQVNSDLVRMTFEMRPEDITK 264
+ P +DRSVIKDP G V + W E + D VR TF + DI K
Sbjct: 196 EFIPFYDRSVIKDPNG---VGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHDIGK 252
Query: 265 LRDKIKENILQAGKSAEQLHLSTHVLACAHSFVCLVK---AYGEETDTN--VMFGVAADC 319
L++ L + + H+++ + CA+ + C++K A GEE D N FG AADC
Sbjct: 253 LKN------LVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADC 306
Query: 320 RSRLDPPLPVNYFGNCVGGQGTVQKASYLMGENGEAFVAEKLSDCIKELKGD---VIEGS 376
R++ +PPLP +YFGN + G + L G+ G E + + I++ D ++ GS
Sbjct: 307 RAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGS 366
Query: 377 EDKFVNVLGMMKGEGLQQRILSVAGSNRFDVYGSDFGWGKPKKVEIVSIDKTGAI--SLA 434
K + + +R LSVAGS + D+Y +DFGWG+P+K+E VSID I SL+
Sbjct: 367 WFKEYDKVDA-------KRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISXSLS 419
Query: 435 ESGDGSGGIEVGVVLEKHQMEVFASLFTDGL 465
+S D G +E+G+ L K + FA+ FT G+
Sbjct: 420 KSKDSDGDLEIGLSLSKTRXNAFAAXFTHGI 450
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 159/378 (42%), Gaps = 46/378 (12%)
Query: 100 NDGVSFTVAESNNA--DFNHLSSNGIRRAVEFRPLVPEPSISD--DKAEVIAIQITLFPN 155
+GV F AES+ DF + +E R L+P S ++ +Q+T F
Sbjct: 90 GEGVLFVEAESDGVVDDFGDFAPT-----LELRRLIPAVDYSQGISSYALLVLQVTYFKC 144
Query: 156 QGFSIGISSHHAVLDGKSSTMFVKSWAYLCKQLQLQEDKNDVVLSSLPLQLTPCFDRSVI 215
G S+G+ H DG S F+ SW+ + + L + L P DR+++
Sbjct: 145 GGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT--------------LPPFIDRTLL 190
Query: 216 K--DPKGLDVVYANHWLEFANTRSLKIIPMKQVNSDLVRMT----FEMRPEDITKLRDKI 269
+ DP + +E+ +LK+ P + SD V T F++ E I+ L+ K
Sbjct: 191 RARDPPQPQFQH----IEYQPPPALKVSP-QTAKSDSVPETAVSIFKLTREQISALKAKS 245
Query: 270 KENILQAGKSAEQLHLSTHVLACAHSFVCLVKAYGEETDTNVMFGVAADCRSRLDPPLPV 329
KE+ + S++ + H + C KA G E D +A D R+RL P LP
Sbjct: 246 KED-------GNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPP 298
Query: 330 NYFGNCVGGQGTVQKASYLMGENGEAFVAEKLSDCIKELKGDVIEGSEDKF---VNVLGM 386
YFGN + + A L + + A K+ D + + D + + D ++ +
Sbjct: 299 GYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSALDYLELQPDLKAL 357
Query: 387 MKG-EGLQQRILSVAGSNRFDVYGSDFGWGKPKKVEIVSIDKTGAISLAESGDGSGGIEV 445
++G + L + R ++ +DFGWG+P + I G + S G + V
Sbjct: 358 VRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSV 417
Query: 446 GVVLEKHQMEVFASLFTD 463
+ L+ M++F S D
Sbjct: 418 AISLQGEHMKLFQSFLYD 435
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 46/378 (12%)
Query: 100 NDGVSFTVAESNNA--DFNHLSSNGIRRAVEFRPLVPEPSISD--DKAEVIAIQITLFPN 155
+GV F AES+ DF + +E R L+P S ++ +Q+T F
Sbjct: 93 GEGVLFVEAESDGVVDDFGDFAPT-----LELRRLIPAVDYSQGISSYALLVLQVTYFKX 147
Query: 156 QGFSIGISSHHAVLDGKSSTMFVKSWAYLCKQLQLQEDKNDVVLSSLPLQLTPCFDRSVI 215
G S+G+ H DG S F+ SW+ + + L + L P DR+++
Sbjct: 148 GGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT--------------LPPFIDRTLL 193
Query: 216 K--DPKGLDVVYANHWLEFANTRSLKIIPMKQVNSDLVRMT----FEMRPEDITKLRDKI 269
+ DP + +E+ +L + P + SD V T F++ E I+ L+ K
Sbjct: 194 RARDPPQPQFQH----IEYQPPPALAVSP-QTAASDSVPETAVSIFKLTREQISALKAKS 248
Query: 270 KENILQAGKSAEQLHLSTHVLACAHSFVCLVKAYGEETDTNVMFGVAADCRSRLDPPLPV 329
KE+ + S++ + H + C KA G E D +A D R+RL P LP
Sbjct: 249 KED-------GNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPP 301
Query: 330 NYFGNCVGGQGTVQKASYLMGENGEAFVAEKLSDCIKELKGDVIEGSEDKF---VNVLGM 386
YFGN + + A L + + A K+ D + + D + + D ++ +
Sbjct: 302 GYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSALDYLELQPDLKAL 360
Query: 387 MKG-EGLQQRILSVAGSNRFDVYGSDFGWGKPKKVEIVSIDKTGAISLAESGDGSGGIEV 445
++G + L + R ++ +DFGWG+P + I G + S G + V
Sbjct: 361 VRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSV 420
Query: 446 GVVLEKHQMEVFASLFTD 463
+ L+ M++F S D
Sbjct: 421 AISLQGEHMKLFQSFLYD 438
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 46/378 (12%)
Query: 100 NDGVSFTVAESNNA--DFNHLSSNGIRRAVEFRPLVPEPSISD--DKAEVIAIQITLFPN 155
+GV F AES+ DF + +E R L+P S ++ +Q+T F
Sbjct: 93 GEGVLFVEAESDGVVDDFGDFAPT-----LELRRLIPAVDYSQGISSYALLVLQVTYFKC 147
Query: 156 QGFSIGISSHHAVLDGKSSTMFVKSWAYLCKQLQLQEDKNDVVLSSLPLQLTPCFDRSVI 215
G S+G+ H DG S F+ SW+ + + L + L P DR+++
Sbjct: 148 GGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT--------------LPPFIDRTLL 193
Query: 216 K--DPKGLDVVYANHWLEFANTRSLKIIPMKQVNSDLVRMT----FEMRPEDITKLRDKI 269
+ DP + +E+ +L + P + SD V T F++ E I+ L+ K
Sbjct: 194 RARDPPQPQFQH----IEYQPPPALAVSP-QTAASDSVPETAVSIFKLTREQISALKAKS 248
Query: 270 KENILQAGKSAEQLHLSTHVLACAHSFVCLVKAYGEETDTNVMFGVAADCRSRLDPPLPV 329
KE+ + S++ + H + C KA G E D +A D R+RL P LP
Sbjct: 249 KED-------GNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPP 301
Query: 330 NYFGNCVGGQGTVQKASYLMGENGEAFVAEKLSDCIKELKGDVIEGSEDKF---VNVLGM 386
YFGN + + A L + + A K+ D + + D + + D ++ +
Sbjct: 302 GYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDNDYLRSALDYLELQPDLKAL 360
Query: 387 MKG-EGLQQRILSVAGSNRFDVYGSDFGWGKPKKVEIVSIDKTGAISLAESGDGSGGIEV 445
++G + L + R ++ +DFGWG+P + I G + S G + V
Sbjct: 361 VRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSV 420
Query: 446 GVVLEKHQMEVFASLFTD 463
+ L+ M++F S D
Sbjct: 421 AISLQGEHMKLFQSFLYD 438
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 99/404 (24%), Positives = 159/404 (39%), Gaps = 71/404 (17%)
Query: 66 LKHSLSLTVHHYLPLAGHIMWPLEAPKPAVYFFPNDGVSFTVAESNNADFNHLSSNGIRR 125
LK SLS + H+ PLAG I + + GV F A S I+
Sbjct: 63 LKQSLSKVLTHFYPLAGRIN------VNSSVDCNDSGVPFV-----EARVQAQLSQAIQN 111
Query: 126 AVEFRPL---VPEPSISDDKAEV-----IAIQITLFPNQGFSIGISSHHAVLDGKSSTMF 177
VE L +P + K EV +A++I+ F G +IG++ H + D S F
Sbjct: 112 VVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATF 171
Query: 178 VKSWAYLCKQLQLQEDKNDVVLSSLPLQLTPCFDRSVIKDPKGLDVVYANHWLEFANTRS 237
+ +W C+ + ++VL P FD + A H+ NT S
Sbjct: 172 LNAWTATCR------GETEIVL--------PNFD------------LAARHFPPVDNTPS 205
Query: 238 LKIIPMKQVNSDLVRMTFEMRPEDITKLRDKIKENILQAGKSAEQLHLSTHVLACAHSFV 297
+++P + ++V F E I LR QA ++E+ + S L A+ +
Sbjct: 206 PELVP----DENVVMKRFVFDKEKIGALR-------AQASSASEEKNFSRVQLVVAYIWK 254
Query: 298 CLVKAYGEETDTNVMFGV--AADCRSRLDPPLPVNYFGNCVGGQGTVQKASYLMGENGEA 355
++ + F V A + RSR++PPLP GN + L+ +A
Sbjct: 255 HVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNI----------ATLLFAAVDA 304
Query: 356 FVAEKLSDCIKELKGDVIEGSEDKFVNVLGMMKG--EGLQQRILSVAGSNRFDVYGSDFG 413
+ D I L+ + + +D +L M E Q +LS R Y DFG
Sbjct: 305 EWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQELLSFTSWCRLGFYDLDFG 364
Query: 414 WGKPKKVEIVSIDKTGAISLAESGDGSGGIEVGVVLEKHQMEVF 457
WGKP + K A L ++ G G+E + + + +M +
Sbjct: 365 WGKPLSACTTTFPKRNAALLMDTRSGD-GVEAWLPMAEDEMAML 407
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|B Chain B, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|C Chain C, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|D Chain D, Structure Of The Catalytic Core Of Human Samhd1
Length = 528
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 103 VSFTVAESNNADFNHL-SSNGIRRAVEFRPLVPEPSISDDKAEVIA-----IQITLFPNQ 156
V +T + + F HL +SNGI+ E L+PE I K +++ ++ +L+P +
Sbjct: 131 VKWTHEQGSVXXFEHLINSNGIKPVXEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYK 190
Query: 157 GFSIGISSHHAVLDGKSSTMFVKSWAYL---CKQLQLQED 193
G S + ++ K + + V W Y C L +Q +
Sbjct: 191 GRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNN 230
>pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 328 PVNYFGNCVGGQGTVQKASYLMGENGEAFVAEKLSDCIKELKGDVIEGSEDKFVNVLGMM 387
P +F + +GG+ + + E G ++ +L ++++ + + NV+ +
Sbjct: 810 PQEFFFHAMGGREGLIDTAVKTAETG--YIQRRLVKALEDIMVHYDNTTRNSLGNVIQFI 867
Query: 388 KGEG------LQQRILSVAGSNRFDVYGSDFGWGKPKKVEIVSIDKTGAISLAESG-DGS 440
GE ++++ L G GSD + K +V++++ D T SL ESG +
Sbjct: 868 YGEDGMDAAHIEKQSLDTIG-------GSDAAFEKRYRVDLLNTDHTLDPSLLESGSEIL 920
Query: 441 GGIEVGVVLEKHQMEV------FASLFTDG 464
G +++ V+L++ ++ +F DG
Sbjct: 921 GDLKLQVLLDEEYKQLVKDRKFLREVFVDG 950
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,848,364
Number of Sequences: 62578
Number of extensions: 588888
Number of successful extensions: 1245
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 12
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)