Query 012243
Match_columns 467
No_of_seqs 188 out of 1197
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 00:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 2.5E-33 5.5E-38 296.6 20.9 359 72-462 43-420 (472)
2 KOG1338 Uncharacterized conser 100.0 6.3E-30 1.4E-34 251.1 15.2 282 77-376 8-314 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.6 1.1E-14 2.3E-19 127.2 11.5 104 357-463 1-110 (128)
4 PF00856 SET: SET domain; Int 99.5 1.9E-14 4.1E-19 128.4 9.3 49 280-328 111-162 (162)
5 smart00317 SET SET (Su(var)3-9 97.4 0.00016 3.5E-09 60.8 4.4 45 282-327 68-116 (116)
6 KOG2589 Histone tail methylase 92.0 0.16 3.4E-06 51.3 3.8 55 282-348 192-247 (453)
7 KOG1085 Predicted methyltransf 90.7 0.24 5.1E-06 48.5 3.4 52 286-337 331-386 (392)
8 KOG1079 Transcriptional repres 83.6 0.99 2.1E-05 49.1 3.4 38 291-328 668-709 (739)
9 smart00317 SET SET (Su(var)3-9 73.1 3.2 6.8E-05 34.2 2.8 28 111-138 12-39 (116)
10 KOG4442 Clathrin coat binding 72.8 3.9 8.5E-05 44.9 4.0 38 291-328 196-237 (729)
11 KOG1080 Histone H3 (Lys4) meth 71.9 3.9 8.6E-05 47.3 4.0 37 292-328 943-983 (1005)
12 KOG2461 Transcription factor B 46.0 19 0.00042 37.6 3.3 35 306-340 121-155 (396)
13 KOG1083 Putative transcription 46.0 25 0.00054 40.7 4.3 35 296-330 1260-1296(1306)
14 COG2940 Proteins containing SE 43.1 13 0.00029 39.8 1.7 38 293-330 410-451 (480)
15 TIGR02059 swm_rep_I cyanobacte 31.1 73 0.0016 26.6 3.8 29 302-330 70-98 (101)
16 PF10281 Ish1: Putative stress 27.3 57 0.0012 21.8 2.2 16 78-93 6-21 (38)
17 KOG1338 Uncharacterized conser 22.5 13 0.00028 38.5 -2.5 76 281-359 269-348 (466)
18 COG2969 SspB Stringent starvat 22.2 93 0.002 27.6 3.1 56 72-137 7-63 (155)
19 PF08666 SAF: SAF domain; Int 21.3 54 0.0012 24.0 1.3 14 112-125 3-16 (63)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=296.57 Aligned_cols=359 Identities=34% Similarity=0.439 Sum_probs=274.3
Q ss_pred cccccchhHHHHHHHhCCCCCCCcEEeecCCCCCCCCceeeEEEecCCCCCCeEEEcCcCCccChhcccCcchHHHhhhh
Q 012243 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT 151 (467)
Q Consensus 72 ~~~~~~~~~f~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~A~~dI~~ge~ll~IP~~~~lt~~~~~~~~~l~~ll~~ 151 (467)
....+....+..|.+.+|....+..+ ++. ..+ .+++.+..++..++.+..+|....++........
T Consensus 43 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 108 (472)
T KOG1337|consen 43 IASSENIKSLKFWLTGNGLSSSKSSL---PGN-DID--EWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYND-------- 108 (472)
T ss_pred CCCccccccceeccccCCcchhhhcc---ccc-ccc--ccchhhhhhhhhhhhhccCCchhhhccccccCcc--------
Confidence 34557778888899999987654332 111 111 1356677777777777777776666655443211
Q ss_pred CCCChh-HHHHHHHHHHHhcCCCCCcHHHHHhhccccCCCccccCCCcccCHHHHhcccCCchHHHHHHHHHHHHHHHHH
Q 012243 152 NKLSEL-ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNE 230 (467)
Q Consensus 152 ~~l~~~-~~Lal~Ll~E~~~g~~S~w~pYi~~LP~~~~~~~~~~~~pl~Ws~~el~~L~gt~l~~~~~~~~~~i~~~y~~ 230 (467)
.. ..++++|+++...+..|+|++|+..||. .+++|++|..+++..|++++....+..++..++..+.+
T Consensus 109 ----~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~ 177 (472)
T KOG1337|consen 109 ----LLPIALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAE 177 (472)
T ss_pred ----ccHHHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHH
Confidence 12 7899999999998888999999999999 47899999999999999999999999888888887776
Q ss_pred HHHHHHhhhhhhhcCCCCCCCCCCChHHHHHHHHhhhcceeeeccc------cccccccccccCCccccCCCCC-ceeEE
Q 012243 231 LDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKC-KAMLA 303 (467)
Q Consensus 231 l~~~~~~~~~l~~~~p~~~~~~~~t~e~f~WA~~~V~SRa~~~~~~------~~~~~~~LvPl~Dmlnnh~~~~-~~~~~ 303 (467)
+..++......+.... .+.++++.|.||+++|.||+|+.+.. +-....+|+|++||. ||+++. .+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~----~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~-NH~~~~~~~~~~ 252 (472)
T KOG1337|consen 178 LLEVLQSHPSLFGSDL----FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLL-NHSPEVIKAGYN 252 (472)
T ss_pred HHHHHHhccccccccc----cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhh-ccCchhcccccc
Confidence 6655433222332222 23389999999999999999986532 123578999999977 677664 55666
Q ss_pred eeCCeEEEEEcCCCCCCCeEEeccCCCChHHHHhhcCccCCCCCCCeEEEEEecCCCCcChHHHHHHHHHcCCCcceEEE
Q 012243 304 AVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFH 383 (467)
Q Consensus 304 ~~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~D~v~l~~~l~~~d~~~~~k~~lL~~~gl~~~~~f~ 383 (467)
..++.+.+++.+++++||||||+||+++|.+||++||||.++||+|.+.+.+.++..|+.+..|.+.+..+++.....|.
T Consensus 253 ~~d~~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (472)
T KOG1337|consen 253 QEDEAVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFS 332 (472)
T ss_pred CCCCcEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEE
Confidence 77779999999999999999999999999999999999999999999999999999999999999999999999889998
Q ss_pred EEeCCCcCchhhhHHHHHhhcC-C--ChHHHHHHHHhc-------CCCCCCCHHHHHHHHHHHHHH-HHHHHhcCCCCHH
Q 012243 384 VHAGREKEAISDMLPYLRLGYV-S--DTSEMQSVISSL-------GPICPVSPCMERAVLDQLADY-FKARLAGYPATLS 452 (467)
Q Consensus 384 l~~~~~~~~~~~LL~~lRl~~~-s--~~~el~~~~~~~-------~~~~~is~~nE~~vl~~L~~~-~~~~L~~y~TTie 452 (467)
+...+.+. .+++...++..+ + ...++....... ....+++.++|...+..+... |...+..+.++++
T Consensus 333 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 410 (472)
T KOG1337|consen 333 ILLTGEPV--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALID 410 (472)
T ss_pred EeecCCch--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhh
Confidence 88776543 333333332222 2 222333332211 245678999999999999998 9999999999999
Q ss_pred HHHHHhhcCC
Q 012243 453 EDEAMVTSAQ 462 (467)
Q Consensus 453 eDe~lL~~~~ 462 (467)
+|+.+++.+.
T Consensus 411 ~~~~vl~~~~ 420 (472)
T KOG1337|consen 411 EDESVLKDNI 420 (472)
T ss_pred hhhhhhcccc
Confidence 9999998654
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6.3e-30 Score=251.14 Aligned_cols=282 Identities=19% Similarity=0.239 Sum_probs=214.6
Q ss_pred chhHHHHHHHhCC-CCC-CCcEEeecCCCCCCCCceeeEEEecCCCCCCeEEEcCcCCccChhccc--C-cchHHHhhhh
Q 012243 77 DLGDLKSWMHKNG-LPP-CKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVL--G-NETIAELLTT 151 (467)
Q Consensus 77 ~~~~f~~Wl~~~G-~~~-~~v~i~~~~~~~g~Grg~~Gl~A~~dI~~ge~ll~IP~~~~lt~~~~~--~-~~~l~~ll~~ 151 (467)
-.+.|+.|++..+ .+. ++|.+...+..++. .| +|++|+++|++|+.++.+|++.+++..+.. + -|+..+++-
T Consensus 8 ~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~-~G-~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~L- 84 (466)
T KOG1338|consen 8 LAKRFLLWGKLTLELETSPKIDNNDLPWVERI-AG-AGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLL- 84 (466)
T ss_pred HHHHHHHHHHHhhheeecccccccccchhhhh-cc-cceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHh-
Confidence 4689999999988 554 48888776653221 12 489999999999999999999999987643 1 122223222
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCcHHHHHhhccccCCCccccCCCcccCHHHHhcccCCchHHHHHHHHHHHHHHHHHH
Q 012243 152 NKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNEL 231 (467)
Q Consensus 152 ~~l~~~~~Lal~Ll~E~~~g~~S~w~pYi~~LP~~~~~~~~~~~~pl~Ws~~el~~L~gt~l~~~~~~~~~~i~~~y~~l 231 (467)
|..+.|..|++.|++|...+.+|+|+||+..+|++. ..++|+||+++|+..|..+.+.++..+..+.|+++|..+
T Consensus 85 ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~ 159 (466)
T KOG1338|consen 85 NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFV 159 (466)
T ss_pred hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHH
Confidence 578899999999999997666799999999999986 689999999999997665555666888899999999887
Q ss_pred HHHHHhhhhhhhcCCCCCCCCCCChHHHHHHHHhhhcceeeeccc-c----------ccccccccccCCccccCCCCCce
Q 012243 232 DTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV-S----------LARRFALVPLGPPLLAYSSKCKA 300 (467)
Q Consensus 232 ~~~~~~~~~l~~~~p~~~~~~~~t~e~f~WA~~~V~SRa~~~~~~-~----------~~~~~~LvPl~Dmlnnh~~~~~~ 300 (467)
.. ++.+.+|..+ +.+++|+|..+++++.+.+|-+.-. + -...-+|+|.+||+||.+..||+
T Consensus 160 i~------pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~na 231 (466)
T KOG1338|consen 160 IQ------PFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANA 231 (466)
T ss_pred HH------HHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhccc
Confidence 65 3455566543 4489999999999999999976421 0 01356899999988654455999
Q ss_pred eEEeeCCeEEEEEcCCCCCCCeEEeccCCCChHHHHhhcCccCCCCC-C--------CeEEEEEecCCCCcChHHHHHHH
Q 012243 301 MLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNP-Y--------DRLVVEAALNTEDPQYQDKRMVA 371 (467)
Q Consensus 301 ~~~~~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np-~--------D~v~l~~~l~~~d~~~~~k~~lL 371 (467)
.+.++++|+.|+|+|+|++|+||+++||.++|. |++||.+.=.-. . |.+.+-..++.+++.+..|..++
T Consensus 232 nl~y~~NcL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ 309 (466)
T KOG1338|consen 232 NLRYEDNCLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILL 309 (466)
T ss_pred ceeccCcceeeeecCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999 888887664322 1 12222234556677777776655
Q ss_pred HHcCC
Q 012243 372 QRNGK 376 (467)
Q Consensus 372 ~~~gl 376 (467)
+.++.
T Consensus 310 ql~nt 314 (466)
T KOG1338|consen 310 QLHNT 314 (466)
T ss_pred Hhccc
Confidence 55553
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.59 E-value=1.1e-14 Score=127.16 Aligned_cols=104 Identities=31% Similarity=0.469 Sum_probs=87.9
Q ss_pred cCCCCcChHHHHHHHHHcCCCcceEEEEEeCCCcCchhhhHHHHHhhcCCChHHHHHHHHhcC------CCCCCCHHHHH
Q 012243 357 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLG------PICPVSPCMER 430 (467)
Q Consensus 357 l~~~d~~~~~k~~lL~~~gl~~~~~f~l~~~~~~~~~~~LL~~lRl~~~s~~~el~~~~~~~~------~~~~is~~nE~ 430 (467)
+++.||+++.|.++|+.+|+....+|.++.++. ++.+|++++||++|+ ++|+..+..... ...++|.+||.
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~--~~~~Ll~~lRv~~~~-~~e~~~~~~~~~~~~~~~~~~~ls~~nE~ 77 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP--LPPELLAALRVLLMT-EEELRALKSLADSSEWSDRSEPLSPENEI 77 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS--SHHHHHHHHHHHHSC-HHHHHHHHHCGTTTHCCHCCC-SBHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC--CCHHHHHHHHHHHcC-hHHHHHHHHhhcccccccccCCCchhhHH
Confidence 357899999999999999999888999998875 789999999999986 688887765432 24679999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHhhcCCC
Q 012243 431 AVLDQLADYFKARLAGYPATLSEDEAMVTSAQY 463 (467)
Q Consensus 431 ~vl~~L~~~~~~~L~~y~TTieeDe~lL~~~~~ 463 (467)
+|+++|...|..+|+.||||+|||+++|+++..
T Consensus 78 ~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~ 110 (128)
T PF09273_consen 78 AALQFLIDLCEARLSAYPTTLEEDEELLQSNDL 110 (128)
T ss_dssp HHHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCC
Confidence 999999999999999999999999999998654
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.54 E-value=1.9e-14 Score=128.36 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=37.9
Q ss_pred ccccccccCCccccCC-CCCceeEE--eeCCeEEEEEcCCCCCCCeEEeccC
Q 012243 280 RRFALVPLGPPLLAYS-SKCKAMLA--AVDDAVQLVVDRPYKAGESIVVWCG 328 (467)
Q Consensus 280 ~~~~LvPl~Dmlnnh~-~~~~~~~~--~~~~~~~l~a~r~i~~GeEv~isYG 328 (467)
...+|+|++||+||.+ ++|.+.++ ..+++++++|.|+|++|||||++||
T Consensus 111 ~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 4689999999986544 24555554 2588999999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.43 E-value=0.00016 Score=60.83 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=34.2
Q ss_pred ccccccCCccccCCCCCceeE--EeeCC--eEEEEEcCCCCCCCeEEecc
Q 012243 282 FALVPLGPPLLAYSSKCKAML--AAVDD--AVQLVVDRPYKAGESIVVWC 327 (467)
Q Consensus 282 ~~LvPl~Dmlnnh~~~~~~~~--~~~~~--~~~l~a~r~i~~GeEv~isY 327 (467)
..+.|+++++ ||+...|+.+ ...++ .+.++|.|+|++||||+++|
T Consensus 68 ~~~~~~~~~i-NHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFI-NHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHee-CCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 3488999977 5665555443 33444 59999999999999999998
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=92.02 E-value=0.16 Score=51.27 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=40.8
Q ss_pred ccccccCCccccCCCCCceeEEeeC-CeEEEEEcCCCCCCCeEEeccCCCChHHHHhhcCccCCCCCC
Q 012243 282 FALVPLGPPLLAYSSKCKAMLAAVD-DAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY 348 (467)
Q Consensus 282 ~~LvPl~Dmlnnh~~~~~~~~~~~~-~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~ 348 (467)
..|=|-+ |.||+-..|-.|...+ +...|++.|||++||||+-.||. ||.-++|.+
T Consensus 192 LwLGPaa--fINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs----------~fFG~~N~~ 247 (453)
T KOG2589|consen 192 LWLGPAA--FINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGS----------GFFGENNEE 247 (453)
T ss_pred heeccHH--hhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecc----------cccCCCCce
Confidence 4466666 4467755555666655 78999999999999999999996 566666654
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=90.70 E-value=0.24 Score=48.47 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=37.6
Q ss_pred ccCCccccCCC--CCceeEEee--CCeEEEEEcCCCCCCCeEEeccCCCChHHHHh
Q 012243 286 PLGPPLLAYSS--KCKAMLAAV--DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLI 337 (467)
Q Consensus 286 Pl~Dmlnnh~~--~~~~~~~~~--~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl 337 (467)
|.+-=|.||+. +|...+..- ...+.+.|.++|.+|||+...||.+|.+.++.
T Consensus 331 ~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 331 PWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred ccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchhHHhh
Confidence 44433557764 455444332 34799999999999999999999998876654
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=83.58 E-value=0.99 Score=49.09 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=29.9
Q ss_pred cccCCCCCc----eeEEeeCCeEEEEEcCCCCCCCeEEeccC
Q 012243 291 LLAYSSKCK----AMLAAVDDAVQLVVDRPYKAGESIVVWCG 328 (467)
Q Consensus 291 lnnh~~~~~----~~~~~~~~~~~l~a~r~i~~GeEv~isYG 328 (467)
|.||+.+.| +++-..++.+-+.|.|.|.+|||+|..|+
T Consensus 668 FANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 668 FANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 457776543 34455677899999999999999999997
No 9
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=73.06 E-value=3.2 Score=34.23 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=23.8
Q ss_pred eeEEEecCCCCCCeEEEcCcCCccChhc
Q 012243 111 HYVAASEDLQAGDAAFSVPNSLVVTLER 138 (467)
Q Consensus 111 ~Gl~A~~dI~~ge~ll~IP~~~~lt~~~ 138 (467)
+|++|+++|++|++|+..+-.++.....
T Consensus 12 ~gl~a~~~i~~g~~i~~~~g~~~~~~~~ 39 (116)
T smart00317 12 WGVRATEDIPKGEFIGEYVGEIITSEEA 39 (116)
T ss_pred EEEEECCccCCCCEEEEEEeEEECHHHH
Confidence 5899999999999999999887765443
No 10
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.80 E-value=3.9 Score=44.88 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=27.0
Q ss_pred cccCCC--CCce-eEEeeC-CeEEEEEcCCCCCCCeEEeccC
Q 012243 291 LLAYSS--KCKA-MLAAVD-DAVQLVVDRPYKAGESIVVWCG 328 (467)
Q Consensus 291 lnnh~~--~~~~-~~~~~~-~~~~l~a~r~i~~GeEv~isYG 328 (467)
|.||+- ||.+ .|...+ -.+-+-+.|.|++||||+..|+
T Consensus 196 FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 196 FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecc
Confidence 446764 4443 354433 3567789999999999999997
No 11
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=71.87 E-value=3.9 Score=47.35 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=29.0
Q ss_pred ccCC--CCCceeEEeeC--CeEEEEEcCCCCCCCeEEeccC
Q 012243 292 LAYS--SKCKAMLAAVD--DAVQLVVDRPYKAGESIVVWCG 328 (467)
Q Consensus 292 nnh~--~~~~~~~~~~~--~~~~l~a~r~i~~GeEv~isYG 328 (467)
.||+ +||-+.+-..+ ..+++++.|+|.+||||+-.|-
T Consensus 943 InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 943 INHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred eecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 3565 56877665443 4899999999999999999986
No 12
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=46.05 E-value=19 Score=37.63 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCCCeEEeccCCCChHHHHhhcC
Q 012243 306 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG 340 (467)
Q Consensus 306 ~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YG 340 (467)
++.+..++.|+|.+||||.++||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 45788899999999999999999888888888887
No 13
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=45.96 E-value=25 Score=40.70 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=25.0
Q ss_pred CCCce-eEEeeCC-eEEEEEcCCCCCCCeEEeccCCC
Q 012243 296 SKCKA-MLAAVDD-AVQLVVDRPYKAGESIVVWCGPQ 330 (467)
Q Consensus 296 ~~~~~-~~~~~~~-~~~l~a~r~i~~GeEv~isYG~~ 330 (467)
++|+. .|...+. .+.|.|.|+|.+||||+..|..+
T Consensus 1260 PNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1260 PNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred CCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 34443 3444322 57788999999999999999754
No 14
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=43.09 E-value=13 Score=39.80 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=27.0
Q ss_pred cCCCCCc--eeEEeeCC--eEEEEEcCCCCCCCeEEeccCCC
Q 012243 293 AYSSKCK--AMLAAVDD--AVQLVVDRPYKAGESIVVWCGPQ 330 (467)
Q Consensus 293 nh~~~~~--~~~~~~~~--~~~l~a~r~i~~GeEv~isYG~~ 330 (467)
||+...| +......| .+..++.++|++||||++.||..
T Consensus 410 nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 410 NHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred ecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 5665444 33333333 77788999999999999999863
No 15
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=31.06 E-value=73 Score=26.57 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=23.7
Q ss_pred EEeeCCeEEEEEcCCCCCCCeEEeccCCC
Q 012243 302 LAAVDDAVQLVVDRPYKAGESIVVWCGPQ 330 (467)
Q Consensus 302 ~~~~~~~~~l~a~r~i~~GeEv~isYG~~ 330 (467)
.+.....+.|...+.|..||+|.++|-.-
T Consensus 70 V~~s~ktVTLTL~~~V~~Gq~VTVsYt~p 98 (101)
T TIGR02059 70 LGGSNTTITLTLAQVVEDGDEVTLSYTKN 98 (101)
T ss_pred EcCcccEEEEEecccccCCCEEEEEeeCC
Confidence 33445589999999999999999999643
No 16
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.34 E-value=57 Score=21.84 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=13.6
Q ss_pred hhHHHHHHHhCCCCCC
Q 012243 78 LGDLKSWMHKNGLPPC 93 (467)
Q Consensus 78 ~~~f~~Wl~~~G~~~~ 93 (467)
...|.+||.++|+..+
T Consensus 6 ~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3689999999999875
No 17
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=13 Score=38.48 Aligned_cols=76 Identities=13% Similarity=-0.016 Sum_probs=53.6
Q ss_pred cccccccCCccccCCCCCcee--EEeeCCeEEEEEcCCCCCCCeEEeccCCCChHHHHhhcC-ccCCC-CCCCeEEEEEe
Q 012243 281 RFALVPLGPPLLAYSSKCKAM--LAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG-FVDED-NPYDRLVVEAA 356 (467)
Q Consensus 281 ~~~LvPl~Dmlnnh~~~~~~~--~~~~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YG-Fv~~~-Np~D~v~l~~~ 356 (467)
..++.|+.+|++--..-++.. +-...+...+++.|.+ |.|..+.|+...+.++...|| |.-.. -|++.+-+ +.
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv-~g 345 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV-IG 345 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee-ee
Confidence 467888888874322223322 2234567788888988 999999999999999999999 55443 78887776 34
Q ss_pred cCC
Q 012243 357 LNT 359 (467)
Q Consensus 357 l~~ 359 (467)
+++
T Consensus 346 lpq 348 (466)
T KOG1338|consen 346 LPQ 348 (466)
T ss_pred chh
Confidence 443
No 18
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=22.23 E-value=93 Score=27.59 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=39.7
Q ss_pred cccccchhHHHHHHHhCCCCCCCcEEeecCCCCCCCCceeeE-EEecCCCCCCeEEEcCcCCccChh
Q 012243 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYV-AASEDLQAGDAAFSVPNSLVVTLE 137 (467)
Q Consensus 72 ~~~~~~~~~f~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl-~A~~dI~~ge~ll~IP~~~~lt~~ 137 (467)
+.+.--+.+|.+||..|++..+-|.-...+ |+ +--+-++-|++|+.|-.+++-+.+
T Consensus 7 p~RPYLlRA~yeWl~DN~~TPhlvVd~t~~----------Gv~VP~eyvkDgqIVLNvs~~Av~nL~ 63 (155)
T COG2969 7 PRRPYLLRALYEWLLDNQLTPHLVVDVTLP----------GVKVPMEYVRDGQIVLNIAPRAVGNLE 63 (155)
T ss_pred CCcchHHHHHHHHHhcCCCCceEEEEcccc----------CccCCHHHccCCeEEEEeCcccccceE
Confidence 355567899999999999998633322222 22 233567889999999998877765
No 19
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=21.32 E-value=54 Score=24.01 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=10.5
Q ss_pred eEEEecCCCCCCeE
Q 012243 112 YVAASEDLQAGDAA 125 (467)
Q Consensus 112 Gl~A~~dI~~ge~l 125 (467)
-++|+++|++|++|
T Consensus 3 vvVA~~di~~G~~i 16 (63)
T PF08666_consen 3 VVVAARDIPAGTVI 16 (63)
T ss_dssp EEEESSTB-TT-BE
T ss_pred EEEEeCccCCCCEE
Confidence 48999999999987
Done!