BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012245
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 178/389 (45%), Gaps = 62/389 (15%)
Query: 69 SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
SG ++ +WG +D GQ HG+ E P PT+ S +V G H V+ ++
Sbjct: 21 SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 73
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
+G EVY+WGW DFG G +S+ + LP + Q D
Sbjct: 74 SGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXX 232
++ S R ++ GD +L P + G++I VAAG HT +++
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 233 XXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292
R T L+P +R V S+G S V
Sbjct: 182 LYGWGWGRYGNLGLGDR-----TDRLVP---------ER--------VTSTGGEKMSMV- 218
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWH 352
ACG RH+ V+ +GAL T+GW YGQ GHG D L P +L + + QI+ G H
Sbjct: 219 --ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRH 276
Query: 353 TVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTE 412
T+ ++ +G++Y +G N+FGQ+G G + + P + P + ++ VSCG RH+ +TE
Sbjct: 277 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQVSCGWRHTLAVTE 334
Query: 413 DGQVLSWGWNKYGQLGLGDSIDRNIPSLV 441
V +WG GQLG+G+S+DRN P ++
Sbjct: 335 RNNVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 291 VKEIACGGRHSAVVTDAGA-LLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAG 349
+ + CG H+ + +G + ++GWG +G+ GHG+++D P +L I+++QIA G
Sbjct: 58 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 350 LWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAV 409
H + +++EG V +G NQ GQLG G + VP+ ++ E R K+V+ GA H+A
Sbjct: 118 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA--FEGIRIKMVAAGAEHTAA 175
Query: 410 LTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN-IACGWWHTL 459
+TEDG + WGW +YG LGLGD DR +P V G + +ACGW HT+
Sbjct: 176 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTI 226
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL 350
+K +A G H+A VT+ G L +GWG YG G G D+L P +S ++ +A G
Sbjct: 163 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW 222
Query: 351 WHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVL 410
HT+ +S G +Y +G +++GQLG G + +P LE L + +S G RH+ L
Sbjct: 223 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGFRHTMAL 280
Query: 411 TEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN-----IACGWWHTLLLAETT 465
T DG++ WGWNK+GQ+G+G+++D+ P V P + ++CGW HTL + E
Sbjct: 281 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR----FPDDQKVVQVSCGWRHTLAVTERN 336
Query: 466 QI 467
+
Sbjct: 337 NV 338
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 135/353 (38%), Gaps = 75/353 (21%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 118 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 156
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 216 KVAAGGRHTLILSDMXXXXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLV 275
VA G RHT+ +S HLIP A S
Sbjct: 217 MVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL-----EDHLIPHKLEALS-------- 263
Query: 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYA 335
S++ +I+ G RH+ +T G L +GW +GQ G G+ DQ P
Sbjct: 264 ------------NSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 311
Query: 336 SSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLE 388
D +V Q++ G HT+ ++ V+ +G GQLG G N PK++E
Sbjct: 312 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 364
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 395 KRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPS-LVPIHGFLPRNIAC 453
++ ++S GA HS L V SWG + GQLG GD+ DR P+ L + G ++ C
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 454 GWWHTLLLAET 464
G HT+ +++
Sbjct: 64 GADHTVAYSQS 74
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 134
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 135 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 187
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 272 GGFRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 330
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 331 AVTERNNVFAWG 342
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 178/389 (45%), Gaps = 62/389 (15%)
Query: 69 SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
SG ++ +WG +D GQ HG+ E P PT+ S +V G H V+ ++
Sbjct: 33 SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 85
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
+G EVY+WGW DFG G +S+ + LP + Q D
Sbjct: 86 SGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 133
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXX 232
++ S R ++ GD +L P + G++I VAAG HT +++
Sbjct: 134 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193
Query: 233 XXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292
R T L+P +R V S+G S V
Sbjct: 194 LYGWGWGRYGNLGLGDR-----TDRLVP---------ER--------VTSTGGEKMSMV- 230
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWH 352
ACG RH+ V+ +GAL T+GW YGQ GHG D L P +L + + QI+ G H
Sbjct: 231 --ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRH 288
Query: 353 TVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTE 412
T+ ++ +G++Y +G N+FGQ+G G + + P + P + ++ VSCG RH+ +TE
Sbjct: 289 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQVSCGWRHTLAVTE 346
Query: 413 DGQVLSWGWNKYGQLGLGDSIDRNIPSLV 441
V +WG GQLG+G+S+DRN P ++
Sbjct: 347 RNNVFAWGRGTNGQLGIGESVDRNFPKII 375
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 291 VKEIACGGRHSAVVTDAGA-LLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAG 349
+ + CG H+ + +G + ++GWG +G+ GHG+++D P +L I+++QIA G
Sbjct: 70 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129
Query: 350 LWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAV 409
H + +++EG V +G NQ GQLG G + VP+ ++ E R K+V+ GA H+A
Sbjct: 130 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA--FEGIRIKMVAAGAEHTAA 187
Query: 410 LTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN-IACGWWHTL 459
+TEDG + WGW +YG LGLGD DR +P V G + +ACGW HT+
Sbjct: 188 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTI 238
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL 350
+K +A G H+A VT+ G L +GWG YG G G D+L P +S ++ +A G
Sbjct: 175 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW 234
Query: 351 WHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVL 410
HT+ +S G +Y +G +++GQLG G + +P LE L + +S G RH+ L
Sbjct: 235 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGWRHTMAL 292
Query: 411 TEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN-----IACGWWHTLLLAETT 465
T DG++ WGWNK+GQ+G+G+++D+ P+ P + ++CGW HTL + E
Sbjct: 293 TSDGKLYGWGWNKFGQVGVGNNLDQ----CSPVQVRFPDDQKVVQVSCGWRHTLAVTERN 348
Query: 466 QI 467
+
Sbjct: 349 NV 350
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 135/353 (38%), Gaps = 75/353 (21%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 130 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 168
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 228
Query: 216 KVAAGGRHTLILSDMXXXXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLV 275
VA G RHT+ +S HLIP A S
Sbjct: 229 MVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL-----EDHLIPHKLEALS-------- 275
Query: 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYA 335
S++ +I+ G RH+ +T G L +GW +GQ G G+ DQ P
Sbjct: 276 ------------NSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323
Query: 336 SSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLE 388
D +V Q++ G HT+ ++ V+ +G GQLG G N PK++E
Sbjct: 324 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 376
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 395 KRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPS-LVPIHGFLPRNIAC 453
++ ++S GA HS L V SWG + GQLG GD+ DR P+ L + G ++ C
Sbjct: 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 75
Query: 454 GWWHTLLLAET 464
G HT+ +++
Sbjct: 76 GADHTVAYSQS 86
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 146
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 147 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 199
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 284 GGWRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 342
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 343 AVTERNNVFAWG 354
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 178/389 (45%), Gaps = 62/389 (15%)
Query: 69 SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
SG ++ +WG +D GQ HG+ E P PT+ S +V G H V+ ++
Sbjct: 21 SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 73
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
+G EVY+WGW DFG G +S+ + LP + Q D
Sbjct: 74 SGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXX 232
++ S R ++ GD +L P + G++I VAAG HT +++
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 233 XXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292
R T L+P +R V S+G S V
Sbjct: 182 LYGWGWGRYGNLGLGDR-----TDRLVP---------ER--------VTSTGGEKMSMV- 218
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWH 352
ACG RH+ V+ +GAL T+GW YGQ GHG D L P +L + + QI+ G H
Sbjct: 219 --ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRH 276
Query: 353 TVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTE 412
T+ ++ +G++Y +G N+FGQ+G G + + P + P + ++ VSCG RH+ +TE
Sbjct: 277 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQVSCGWRHTLAVTE 334
Query: 413 DGQVLSWGWNKYGQLGLGDSIDRNIPSLV 441
V +WG GQLG+G+S+DRN P ++
Sbjct: 335 RNNVFAWGRGTNGQLGIGESVDRNFPKII 363
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 291 VKEIACGGRHSAVVTDAGA-LLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAG 349
+ + CG H+ + +G + ++GWG +G+ GHG+++D P +L I+++QIA G
Sbjct: 58 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 350 LWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAV 409
H + +++EG V +G NQ GQLG G + VP+ ++ E R K+V+ GA H+A
Sbjct: 118 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA--FEGIRIKMVAAGAEHTAA 175
Query: 410 LTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN-IACGWWHTL 459
+TEDG + WGW +YG LGLGD DR +P V G + +ACGW HT+
Sbjct: 176 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTI 226
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL 350
+K +A G H+A VT+ G L +GWG YG G G D+L P +S ++ +A G
Sbjct: 163 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW 222
Query: 351 WHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVL 410
HT+ +S G +Y +G +++GQLG G + +P LE L + +S G RH+ L
Sbjct: 223 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGWRHTMAL 280
Query: 411 TEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN-----IACGWWHTLLLAETT 465
T DG++ WGWNK+GQ+G+G+++D+ P+ P + ++CGW HTL + E
Sbjct: 281 TSDGKLYGWGWNKFGQVGVGNNLDQ----CSPVQVRFPDDQKVVQVSCGWRHTLAVTERN 336
Query: 466 QI 467
+
Sbjct: 337 NV 338
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 135/353 (38%), Gaps = 75/353 (21%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 118 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 156
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 216 KVAAGGRHTLILSDMXXXXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLV 275
VA G RHT+ +S HLIP A S
Sbjct: 217 MVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL-----EDHLIPHKLEALS-------- 263
Query: 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYA 335
S++ +I+ G RH+ +T G L +GW +GQ G G+ DQ P
Sbjct: 264 ------------NSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 311
Query: 336 SSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLE 388
D +V Q++ G HT+ ++ V+ +G GQLG G N PK++E
Sbjct: 312 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 364
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 395 KRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPS-LVPIHGFLPRNIAC 453
++ ++S GA HS L V SWG + GQLG GD+ DR P+ L + G ++ C
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 454 GWWHTLLLAET 464
G HT+ +++
Sbjct: 64 GADHTVAYSQS 74
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 134
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 135 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 187
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 272 GGWRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 330
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 331 AVTERNNVFAWG 342
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 176/389 (45%), Gaps = 62/389 (15%)
Query: 69 SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
SG ++ +WG +D GQ HG+ E P PT+ S +V G H V+ ++
Sbjct: 23 SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 75
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
+G EVY+WGW DFG G +S+ + LP + Q D
Sbjct: 76 SGXEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 123
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXX 232
+ S R ++ GD +L P + G++I VAAG HT +++
Sbjct: 124 LAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGD 183
Query: 233 XXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292
R T L+P +R V S+G S V
Sbjct: 184 LYGWGWGRYGNLGLGDR-----TDRLVP---------ER--------VTSTGGEKXSXV- 220
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWH 352
ACG RH+ V+ +GAL T+GW YGQ GHG D L P +L + + QI+ G H
Sbjct: 221 --ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARH 278
Query: 353 TVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTE 412
T ++ +G++Y +G N+FGQ+G G + + P + P + ++ VSCG RH+ +TE
Sbjct: 279 TXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQVSCGWRHTLAVTE 336
Query: 413 DGQVLSWGWNKYGQLGLGDSIDRNIPSLV 441
V +WG GQLG+G+S+DRN P ++
Sbjct: 337 RNNVFAWGRGTNGQLGIGESVDRNFPKII 365
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 291 VKEIACGGRHSAVVTDAGA-LLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAG 349
+ + CG H+ + +G + ++GWG +G+ GHG+++D P +L I+++QIA G
Sbjct: 60 IVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 119
Query: 350 LWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAV 409
H + ++ EG V +G NQ GQLG G + VP+ ++ E R K V+ GA H+A
Sbjct: 120 DSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA--FEGIRIKXVAAGAEHTAA 177
Query: 410 LTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLV-PIHGFLPRNIACGWWHTL 459
+TEDG + WGW +YG LGLGD DR +P V G +ACGW HT+
Sbjct: 178 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTI 228
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL 350
+K +A G H+A VT+ G L +GWG YG G G D+L P +S + +A G
Sbjct: 165 IKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGW 224
Query: 351 WHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVL 410
HT+ +S G +Y +G +++GQLG G + +P LE L + +S GARH+ L
Sbjct: 225 RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGARHTXAL 282
Query: 411 TEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN-----IACGWWHTLLLAETT 465
T DG++ WGWNK+GQ+G+G+++D+ P+ P + ++CGW HTL + E
Sbjct: 283 TSDGKLYGWGWNKFGQVGVGNNLDQ----CSPVQVRFPDDQKVVQVSCGWRHTLAVTERN 338
Query: 466 QI 467
+
Sbjct: 339 NV 340
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 134/353 (37%), Gaps = 75/353 (21%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 119
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 120 DSHCLAVTXEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 158
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K +
Sbjct: 159 AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXS 218
Query: 216 KVAAGGRHTLILSDMXXXXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLV 275
VA G RHT+ +S HLIP A S
Sbjct: 219 XVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL-----EDHLIPHKLEALS-------- 265
Query: 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYA 335
S++ +I+ G RH+ +T G L +GW +GQ G G+ DQ P
Sbjct: 266 ------------NSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 313
Query: 336 SSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLE 388
D +V Q++ G HT+ ++ V+ +G GQLG G N PK++E
Sbjct: 314 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 366
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 342 QVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVS 401
+V I+AG H+V + V +G + GQLG G AE+ P + L+ + V+
Sbjct: 7 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG--DAEDRPSPTQLSALDGHQIVSVT 64
Query: 402 CGARHSAVLTEDG-QVLSWGWNKYGQLGLGDSIDRNIP-SLVPIHGFLPRNIACGWWHTL 459
CGA H+ ++ G +V SWGW +G+LG G+S D P + +HG + IACG H L
Sbjct: 65 CGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 124
Query: 460 LLAETTQI 467
+ ++
Sbjct: 125 AVTXEGEV 132
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 395 KRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPS-LVPIHGFLPRNIAC 453
++ ++S GA HS L V SWG + GQLG GD+ DR P+ L + G ++ C
Sbjct: 6 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 65
Query: 454 GWWHTLLLAET 464
G HT+ +++
Sbjct: 66 GADHTVAYSQS 76
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGTS---PEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 80 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTXEGEVQSWG 136
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 137 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGW 189
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 274 GGARHTXALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 332
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 333 AVTERNNVFAWG 344
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 119/271 (43%), Gaps = 34/271 (12%)
Query: 202 SPC--LVTLNPGVKITKVAAGGRHTLILSDMXXXXXXXXXXXXXXXXXSRIKMVPTPHLI 259
+PC L TL P I GG TL + V TP L+
Sbjct: 45 TPCEALATLRPVQLI-----GGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLL 99
Query: 260 PCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYG 319
++H + +++ +VNS GG+H ++ G + ++G G
Sbjct: 100 ESIQH--------VFIKKVAVNS--------------GGKHCLALSSEGEVYSWGEAEDG 137
Query: 320 QCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQ 379
+ GHG+ + RP SL I+V +AAG H+ C++ G +Y +G ++G+LG +
Sbjct: 138 KLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE 197
Query: 380 AENVPKLLETPILESKRAKVVSCGA--RHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNI 437
+ PKL+E L+ R ++CG+ + LT+D V SWG YG+LG G S +
Sbjct: 198 DQLKPKLVEA--LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKV 255
Query: 438 PSLVP-IHGFLPRNIACGWWHTLLLAETTQI 467
P + + G + CG ++ L ++ +
Sbjct: 256 PMKIDSLTGLGVVKVECGSQFSVALTKSGAV 286
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 291 VKEIACGG--RHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAA 348
V +IACG + +TD + ++G G YG+ G G ++ P SL + V ++
Sbjct: 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272
Query: 349 GLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSA 408
G +V ++ G VY +G + +LG G D P+ ++ L+ K+ ++ G+ H
Sbjct: 273 GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAIATGSLHCV 330
Query: 409 VLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLV-PIHGFLPRNIACGWWHTL 459
TEDG+V +WG N GQLG G + P LV + G +ACG HTL
Sbjct: 331 CCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTL 382
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118
G F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 273 GSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVC 331
Query: 119 VTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 332 CTEDGEVYTWG 342
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
Query: 298 GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCIS 357
GR + +G + +G GQ G P+ +L ++ Q+ G ++
Sbjct: 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69
Query: 358 VEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVL 417
+G++Y G G+LG G ++ + P LLE+ + V+ G +H L+ +G+V
Sbjct: 70 ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVY 129
Query: 418 SWGWNKYGQLGLGDSIDRNIPSLV-PIHGFLPRNIACGWWHT 458
SWG + G+LG G+ + P ++ + G ++A G H+
Sbjct: 130 SWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHS 171
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 64 LATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSV 119
LA S G++ +WG A+D G +P P E+ VV AAG AH V
Sbjct: 120 LALSSEGEVYSWGEAEDG-----KLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACV 174
Query: 120 TEAGEVYTWG 129
T AG++YTWG
Sbjct: 175 TAAGDLYTWG 184
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 56 CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAA 111
CG G L ++ + +WG D Y G+ G P+ ++ VVK
Sbjct: 218 CGSGDAQTLCLTDDDTVWSWGDGD-----YGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272
Query: 112 GWAHCVSVTEAGEVYTWG 129
G V++T++G VYTWG
Sbjct: 273 GSQFSVALTKSGAVYTWG 290
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 103/441 (23%), Positives = 173/441 (39%), Gaps = 88/441 (19%)
Query: 35 KSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94
K P L IP + ++ G + S+SG++ ++G +DEG + G
Sbjct: 50 KKPALVSIPEDVVQAEA-------GGMHTVCLSKSGQVYSFG-CNDEGALGRDTSVEGSE 101
Query: 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDST 154
P + + VV+ +AG +H ++T+ G V+ WG SF +D+
Sbjct: 102 MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG------------------SF-RDNN 142
Query: 155 GKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKI 214
G L E +K+ ++ P V L+ V +
Sbjct: 143 GVIGLL--------------EPMKK--------------------SMVPVQVQLD--VPV 166
Query: 215 TKVAAGGRHTLILSDMXXXXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLL 274
KVA+G H ++L+ + ++ P L G +R L+
Sbjct: 167 VKVASGNDHLVMLT--------ADGDLYTLGCGEQGQLGRVPELFAN-RGGRQGLERLLV 217
Query: 275 VRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSY 334
+ + S G G ++ CG + ++ G + FG Y Q G T P
Sbjct: 218 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQN 277
Query: 335 ASSLMDIQVEQI--AAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAE-NVPKLL-ETP 390
+S + + + G HTVC+ EG+ Y G ++G+LG G E ++P L+ P
Sbjct: 278 LTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP 337
Query: 391 ILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN 450
+ S V+CGA +T+DG+V +WG QLG G D + S V + G N
Sbjct: 338 AVSS-----VACGASVGYAVTKDGRVFAWGMGTNYQLGTGQ--DEDAWSPVEMMGKQLEN 390
Query: 451 -----IACGWWHTLLLAETTQ 466
++ G HT+LL + +
Sbjct: 391 RVVLSVSSGGQHTVLLVKDKE 411
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 17/170 (10%)
Query: 300 HSAVVTDAGALLTFGWGLYGQCGHG-STNDQLRPSYASSLMDIQVEQIAAGLWHTVCISV 358
H + T+ G +LT G G GQ G G + ++ +P+ S D V Q AG HTVC+S
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSK 76
Query: 359 EGRVYVFGGNQFGQLG--TGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQV 416
G+VY FG N G LG T V+ +E VP +E L+ K + VS G H+A LT+DG+V
Sbjct: 77 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE---LQEKVVQ-VSAGDSHTAALTDDGRV 132
Query: 417 LSWG--WNKYGQLGLGDSIDRNIPSLVPIHGFLP---RNIACGWWHTLLL 461
WG + G +GL + + + S+VP+ L +A G H ++L
Sbjct: 133 FLWGSFRDNNGVIGLLEPMKK---SMVPVQVQLDVPVVKVASGNDHLVML 179
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 169/430 (39%), Gaps = 70/430 (16%)
Query: 66 TSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEV 125
++E G ++T G D GQ L E +P + VV+A AG H V ++++G+V
Sbjct: 12 STEPGLVLTLGQGD-VGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQV 69
Query: 126 YTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSA 185
Y++G C + RD GS + P E+VV+ S+
Sbjct: 70 YSFG---CNDEGALGRDTSVEGS---------------EMVPGKVELQEKVVQ---VSAG 108
Query: 186 REESENPASGDEFF--------------------TLSPCLVTLNPGVKITKVAAGGRHTL 225
+ F ++ P V L+ V + KVA+G H +
Sbjct: 109 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD--VPVVKVASGNDHLV 166
Query: 226 ILSDMXXXXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGK 285
+L+ + ++ P L G +R L+ + + S G
Sbjct: 167 MLT--------ADGDLYTLGCGEQGQLGRVPELFAN-RGGRQGLERLLVPKCVMLKSRGS 217
Query: 286 AGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQ 345
G ++ CG + ++ G + FG Y Q G T P +S +
Sbjct: 218 RGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSW 277
Query: 346 I--AAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAE-NVPKLL-ETPILESKRAKVVS 401
+ + G HTVC+ EG+ Y G ++G+LG G E ++P L+ P + S V+
Sbjct: 278 VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSS-----VA 332
Query: 402 CGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRN-----IACGWW 456
CGA +T+DG+V +WG QLG G D + S V + G N ++ G
Sbjct: 333 CGASVGYAVTKDGRVFAWGMGTNYQLGTGQ--DEDAWSPVEMMGKQLENRVVLSVSSGGQ 390
Query: 457 HTLLLAETTQ 466
HT+LL + +
Sbjct: 391 HTVLLVKDKE 400
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 17/170 (10%)
Query: 300 HSAVVTDAGALLTFGWGLYGQCGHG-STNDQLRPSYASSLMDIQVEQIAAGLWHTVCISV 358
H + T+ G +LT G G GQ G G + ++ +P+ S D V Q AG HTVC+S
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSK 65
Query: 359 EGRVYVFGGNQFGQLG--TGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQV 416
G+VY FG N G LG T V+ +E VP +E L+ K + VS G H+A LT+DG+V
Sbjct: 66 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE---LQEKVVQ-VSAGDSHTAALTDDGRV 121
Query: 417 LSWG--WNKYGQLGLGDSIDRNIPSLVPIHGFLP---RNIACGWWHTLLL 461
WG + G +GL + + + S+VP+ L +A G H ++L
Sbjct: 122 FLWGSFRDNNGVIGLLEPMKK---SMVPVQVQLDVPVVKVASGNDHLVML 168
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A ++ G++ WGS D ++ P + + VVK A+G H V +T G+
Sbjct: 114 ALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD 173
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQ 150
+YT G E +V F + G Q
Sbjct: 174 LYTLGCGEQGQLGRVPELFANRGGRQ 199
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 312 TFGWGLYGQCGHG---STNDQLR----PSYASSLMDIQVEQIAAGLWHTVCISVEGRVYV 364
+ WG + +C G D+++ P + + Q+A G H + + EG V+
Sbjct: 169 VYAWGTF-RCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227
Query: 365 FGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKY 424
+G Q QLG V + + L P + K ++ G H LT+D +++SWG N++
Sbjct: 228 WGNGQQNQLGRKVMERFRLKTLDPRP-FGLRHVKYIASGENHCFALTKDNKLVSWGLNQF 286
Query: 425 GQLGLGDSIDRNIPSLVPIHGFLP-----RNIACGWWHTLLLAE 463
GQ G+ + ++ P LP R+IA G H+L+L++
Sbjct: 287 GQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQ 330
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/405 (21%), Positives = 147/405 (36%), Gaps = 79/405 (19%)
Query: 76 GSADDEGQSYLTSGKHGETP--EPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
GS + G L K + P PF EA ++ A G H +++ E V++WG +
Sbjct: 37 GSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCND- 95
Query: 134 VPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPA 193
G+ +D++ + L A S ++ + T + P
Sbjct: 96 ------------VGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP 143
Query: 194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL---SDMXXXXXXXXXXXXXXXXXSRI 250
L G K+ ++AA + L ++ +I
Sbjct: 144 --------------LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKI 189
Query: 251 KMVPTPHLIPCLE-----HAASGKDRPLLVRQ---------GSVNSSGKA---------- 286
K+ TP +P A GKD L + + G N G+
Sbjct: 190 KIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTL 249
Query: 287 -----GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQ----LRPSYASS 337
G +VK IA G H +T L+++G +GQCG + +P +
Sbjct: 250 DPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL 309
Query: 338 LMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVD------------QAENVPK 385
++ + IAAG H++ +S +G +Y G ++G D +A VP
Sbjct: 310 PDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVP- 368
Query: 386 LLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLG 430
L T + + K V+ G+ HS + ++G SWG+ + +GLG
Sbjct: 369 -LPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLG 412
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 63 ALATSESGKLITWGSAD--------DEGQSYLTSGKHGETPEPFPLPTEASVV----KAA 110
+L S+ G L + G D D Y HG+ PLPT+ + V A
Sbjct: 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKA-RAVPLPTKLNNVPKFKSVA 383
Query: 111 AGWAHCVSVTEAGEVYTWGWRE 132
AG H V+V + G Y+WG+ E
Sbjct: 384 AGSHHSVAVAQNGIAYSWGFGE 405
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 103/284 (36%), Gaps = 49/284 (17%)
Query: 65 ATSESGKLITWGSAD-DEGQ--SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTE 121
A +G++ WG+ +EG Y K +TP P ++ ++V+ A G H + + E
Sbjct: 162 ALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDE 221
Query: 122 AGEVYTWG-------WRECVPSAKVT----RDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170
G V+ WG R+ + ++ R FG + ++G+ A D
Sbjct: 222 EGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG-LRHVKYIASGENHCF----ALTKDN 276
Query: 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDM 230
+ + + E+ E+ A P + L V I +AAG H+LILS
Sbjct: 277 KLVSWGLNQFGQCGVSEDVEDGA-----LVTKPKRLALPDNVVIRSIAAGEHHSLILS-- 329
Query: 231 XXXXXXXXXXXXXXXXXSRIKM----VPTPHLIPCLEHAASGKDR--PLLVRQGSVNSSG 284
R+ M +P +L GK R PL + +V
Sbjct: 330 ---------QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK-- 378
Query: 285 KAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTND 328
K +A G HS V G ++G+G G G D
Sbjct: 379 ------FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFED 416
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 308 GALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDI-QVEQIAAGLWHTVCISVEGRVYVFG 366
G +L G G GQ G G D L S + I I+AG H + ++ G +Y FG
Sbjct: 43 GNVLVCGNGDVGQLGLGE--DILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFG 100
Query: 367 GNQFGQLG--TGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKY 424
N G LG T D +E+ P L++ P +A +S G HSA L EDG+V +WG +
Sbjct: 101 CNDEGALGRDTSEDGSESKPDLIDLP----GKALCISAGDSHSACLLEDGRVFAWGSFRD 156
Query: 425 GQLGLGDSIDRNIPSLVPI-HGFLPRNIACGWWHTLLLAETTQI 467
+G +ID N + + + G + +IA G H ++L ++
Sbjct: 157 SHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKV 200
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 14/142 (9%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTND--QLRPSYASSLMDI--QVEQIAA 348
+I+ GG H+ V+T +G + +FG G G ++ D + +P L+D+ + I+A
Sbjct: 79 DISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKP----DLIDLPGKALCISA 134
Query: 349 GLWHTVCISVEGRVYVFGG--NQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARH 406
G H+ C+ +GRV+ +G + G +G +D + P ++E ++ GA H
Sbjct: 135 GDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP----IDLMEGTVCCSIASGADH 190
Query: 407 SAVLTEDGQVLSWGWNKYGQLG 428
+LT G+V + G + GQLG
Sbjct: 191 LVILTTAGKVFTVGCAEQGQLG 212
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 336 SSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETP-ILES 394
+ L DI+ IA G HTV ++ + + V G ++G+LG G +V ++E P I++
Sbjct: 291 TELKDIR--HIAGGQHHTVILTTDLKCSVVGRPEYGRLGLG-----DVKDVVEKPTIVKK 343
Query: 395 KRAKVVS--CGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLV 441
K+VS CG S +T DG++ SWG QLG+GD D P +V
Sbjct: 344 LTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQCGHGS-----------TNDQLRPSYASSLMDIQ 342
IA G H ++T AG + T G GQ G S D LRP+
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 343 VEQIAAGLWHTVCISVEGRV-YVFGGNQFGQLGTGVDQAENVPKLLETPI-LESKRAKVV 400
E I A + T + +V + G N F QL E TPI E K + +
Sbjct: 244 FEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKE----FALTPIKTELKDIRHI 299
Query: 401 SCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSID 434
+ G H+ +LT D + G +YG+LGLGD D
Sbjct: 300 AGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD 333
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQL-RPSYASSLMDIQVEQIAAG 349
++ IA G H+ ++T G YG+ G G D + +P+ L + ++ + G
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCG 354
Query: 350 LWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAV 409
+ ++++G++Y +G QLG G E P ++ + + K + S G +H+
Sbjct: 355 EVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIF 414
Query: 410 LTE 412
L +
Sbjct: 415 LVK 417
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 100/277 (36%), Gaps = 43/277 (15%)
Query: 68 ESGKLITWGS-ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVY 126
E G++ WGS D G LT G P L A+G H V +T AG+V+
Sbjct: 144 EDGRVFAWGSFRDSHGNMGLTI--DGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF 201
Query: 127 TWGWRECVPSAKVT-RDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSA 185
T G E +++ R G K + + L +A P + + S
Sbjct: 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQT 261
Query: 186 R----------EESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXXXXX 235
+ ++ + G E F L+P L I +A G HT+IL+
Sbjct: 262 QVIWATGLNNFKQLAHETKGKE-FALTPIKTELK---DIRHIAGGQHHTVILT------T 311
Query: 236 XXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIA 295
R+ + ++ ++P +V++ + + +
Sbjct: 312 DLKCSVVGRPEYGRLGLGDVKDVV----------EKPTIVKKLT---------EKIVSVG 352
Query: 296 CGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRP 332
CG S VT G L ++G G+ Q G G +D+L P
Sbjct: 353 CGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 54 DVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET-PEPFPLPTEASVVKAAAG 112
D+ GG L ++SG + ++G D+ TS E+ P+ LP +A + +AG
Sbjct: 79 DISAGGM-HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCI--SAG 135
Query: 113 WAHCVSVTEAGEVYTWG 129
+H + E G V+ WG
Sbjct: 136 DSHSACLLEDGRVFAWG 152
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 286 AGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQ 345
A +S V IA G HS + D G ++ +G GQ P+ A S V+
Sbjct: 60 ATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQT--------TVPAEARS----GVDA 106
Query: 346 IAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGAR 405
IAAG W + + +G+V +G + GQ VP E++ G
Sbjct: 107 IAAGAWASYALK-DGKVIAWGDDSDGQT--------TVPA-------EAQSGVTALDGGV 150
Query: 406 HSAVLTEDGQVLSWGWNKYGQ 426
++A+ ++G V++WG N +GQ
Sbjct: 151 YTALAVKNGGVIAWGDNYFGQ 171
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 286 AGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQ 345
A +S V IA G HS + D G ++ +G GQ P+ A S V+
Sbjct: 62 ATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQT--------TVPAEARS----GVDA 108
Query: 346 IAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGAR 405
IAAG W + + +G+V +G + GQ VP E++ G
Sbjct: 109 IAAGAWASYALK-DGKVIAWGDDSDGQT--------TVPA-------EAQSGVTALDGGV 152
Query: 406 HSAVLTEDGQVLSWGWNKYGQ 426
++A+ ++G V++WG N +GQ
Sbjct: 153 YTALAVKNGGVIAWGDNYFGQ 173
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 105 SVVKAAAGWAHCVSVTEAGEV-YTWGWRECVPSAKVTRDFGSAGSFQKDST 154
+V++ G A V + AGEV T+ R+CV + FGS+G+F +DST
Sbjct: 281 TVLETYEGEAFTVPSSTAGEVCSTYLGRDCVING-----FGSSGTFSEDST 326
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 105 SVVKAAAGWAHCVSVTEAGEV-YTWGWRECVPSAKVTRDFGSAGSFQKDST 154
+V++ G A V T AGEV T+ R+CV + FG +G+F +DST
Sbjct: 281 TVLETYEGAAFTVPSTTAGEVCSTYLGRDCVING-----FGCSGTFSEDST 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,120,201
Number of Sequences: 62578
Number of extensions: 605201
Number of successful extensions: 1361
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 119
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)