Query 012245
Match_columns 467
No_of_seqs 234 out of 2341
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4.1E-52 8.9E-57 392.9 29.5 367 14-463 62-464 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.4E-46 3E-51 355.5 26.5 335 61-467 59-413 (476)
3 KOG1427 Uncharacterized conser 100.0 2.2E-43 4.8E-48 312.7 19.5 372 18-466 18-401 (443)
4 KOG1427 Uncharacterized conser 100.0 8.9E-39 1.9E-43 283.5 17.7 285 93-464 45-346 (443)
5 KOG0783 Uncharacterized conser 100.0 3.9E-28 8.5E-33 240.7 16.5 312 63-466 135-451 (1267)
6 KOG0783 Uncharacterized conser 99.9 3.2E-26 6.8E-31 227.3 16.3 307 14-415 136-451 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 8.4E-23 1.8E-27 210.3 24.0 359 17-462 495-893 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 2.9E-23 6.3E-28 213.7 17.7 294 49-388 568-869 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 2E-12 4.4E-17 88.8 4.9 49 413-461 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 1E-11 2.3E-16 85.2 4.8 50 307-356 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 1.7E-11 3.7E-16 73.1 4.5 30 214-243 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 3.3E-11 7.2E-16 71.8 4.7 30 397-426 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 9.2E-13 2E-17 133.6 -9.2 179 208-414 10-197 (850)
14 KOG0941 E3 ubiquitin protein l 99.1 2.1E-12 4.6E-17 131.0 -7.4 172 289-465 14-197 (850)
15 PF11725 AvrE: Pathogenicity f 96.2 0.11 2.5E-06 58.5 14.5 234 214-465 560-815 (1774)
16 KOG3669 Uncharacterized conser 94.3 2.8 6E-05 42.6 16.1 69 213-312 228-298 (705)
17 KOG3669 Uncharacterized conser 92.0 2 4.3E-05 43.5 11.3 70 290-365 228-299 (705)
18 KOG0943 Predicted ubiquitin-pr 90.0 0.047 1E-06 58.9 -2.0 132 103-317 373-506 (3015)
19 PF11725 AvrE: Pathogenicity f 89.0 6.7 0.00015 45.1 13.1 116 206-360 697-815 (1774)
20 KOG0943 Predicted ubiquitin-pr 88.5 0.073 1.6E-06 57.6 -1.9 137 283-426 368-509 (3015)
21 KOG0315 G-protein beta subunit 86.0 27 0.0006 32.0 14.4 61 350-423 136-198 (311)
22 PF07569 Hira: TUP1-like enhan 78.9 13 0.00029 33.6 8.6 28 289-316 13-40 (219)
23 PF07569 Hira: TUP1-like enhan 77.4 17 0.00037 33.0 8.8 28 342-369 14-41 (219)
24 smart00706 TECPR Beta propelle 77.3 4.5 9.8E-05 24.5 3.5 25 104-128 8-33 (35)
25 COG4257 Vgb Streptogramin lyas 76.3 31 0.00068 32.2 9.9 61 55-129 58-121 (353)
26 smart00706 TECPR Beta propelle 75.0 5.8 0.00013 24.0 3.6 24 213-236 9-33 (35)
27 KOG0646 WD40 repeat protein [G 72.2 1.1E+02 0.0024 30.6 18.4 66 52-130 84-152 (476)
28 KOG0291 WD40-repeat-containing 68.8 1.7E+02 0.0037 31.4 23.9 34 396-429 522-557 (893)
29 cd00200 WD40 WD40 domain, foun 65.0 1E+02 0.0023 27.5 29.0 56 62-130 65-122 (289)
30 KOG1900 Nuclear pore complex, 63.8 2.5E+02 0.0054 32.3 15.1 46 201-246 230-279 (1311)
31 PF12341 DUF3639: Protein of u 62.4 22 0.00048 20.3 3.8 23 212-234 2-24 (27)
32 TIGR01063 gyrA DNA gyrase, A s 57.4 3.1E+02 0.0066 30.4 20.8 78 49-130 534-619 (800)
33 PF14517 Tachylectin: Tachylec 56.3 62 0.0014 29.4 7.7 73 51-128 82-155 (229)
34 TIGR03300 assembly_YfgL outer 50.6 2.5E+02 0.0055 27.4 13.4 56 351-419 321-376 (377)
35 KOG2106 Uncharacterized conser 49.6 3.1E+02 0.0066 28.1 13.4 19 294-312 285-303 (626)
36 PF04762 IKI3: IKI3 family; I 48.9 4.4E+02 0.0096 29.8 16.3 27 212-238 427-455 (928)
37 PF06739 SBBP: Beta-propeller 48.1 22 0.00047 22.1 2.6 19 405-423 15-33 (38)
38 KOG0649 WD40 repeat protein [G 47.7 2.3E+02 0.005 26.1 11.8 77 289-366 63-142 (325)
39 KOG1034 Transcriptional repres 45.4 43 0.00094 31.9 5.1 56 17-77 326-382 (385)
40 PRK05560 DNA gyrase subunit A; 45.0 4.7E+02 0.01 29.0 21.7 77 49-129 536-620 (805)
41 PHA03098 kelch-like protein; P 45.0 3E+02 0.0064 28.6 12.1 16 299-315 382-397 (534)
42 COG5308 NUP170 Nuclear pore co 44.8 1.6E+02 0.0036 32.3 9.6 102 14-132 96-202 (1263)
43 COG4257 Vgb Streptogramin lyas 44.2 74 0.0016 29.8 6.3 101 14-132 67-168 (353)
44 TIGR03300 assembly_YfgL outer 44.2 1.9E+02 0.0042 28.3 10.1 15 222-236 362-376 (377)
45 KOG0649 WD40 repeat protein [G 44.0 2E+02 0.0044 26.5 8.8 48 339-387 61-109 (325)
46 PF02239 Cytochrom_D1: Cytochr 43.1 3.4E+02 0.0074 26.8 12.8 76 290-366 70-156 (369)
47 TIGR01063 gyrA DNA gyrase, A s 39.6 5.7E+02 0.012 28.4 17.6 120 289-421 588-717 (800)
48 TIGR01062 parC_Gneg DNA topois 38.7 5.6E+02 0.012 28.0 15.5 33 206-238 570-604 (735)
49 KOG1034 Transcriptional repres 36.9 90 0.0019 29.9 5.8 36 203-238 345-382 (385)
50 KOG1274 WD40 repeat protein [G 36.2 6.3E+02 0.014 27.9 22.1 63 62-127 17-80 (933)
51 smart00442 FGF Acidic and basi 34.9 2.5E+02 0.0054 22.9 8.4 66 342-419 3-68 (126)
52 KOG1900 Nuclear pore complex, 34.2 7.1E+02 0.015 28.9 12.8 49 381-429 229-279 (1311)
53 PLN03215 ascorbic acid mannose 34.0 1.7E+02 0.0036 29.0 7.5 61 291-366 162-225 (373)
54 KOG0641 WD40 repeat protein [G 32.2 1.4E+02 0.003 27.0 5.9 74 225-318 38-111 (350)
55 PF03785 Peptidase_C25_C: Pept 31.0 98 0.0021 23.0 4.0 34 213-246 17-51 (81)
56 KOG1274 WD40 repeat protein [G 30.3 7.9E+02 0.017 27.2 14.6 24 289-312 57-80 (933)
57 KOG2106 Uncharacterized conser 30.3 6.2E+02 0.013 26.0 11.4 89 291-418 214-303 (626)
58 PF13418 Kelch_4: Galactose ox 30.1 52 0.0011 21.3 2.4 17 405-421 4-20 (49)
59 KOG0315 G-protein beta subunit 28.7 4.8E+02 0.01 24.2 20.4 25 291-315 170-196 (311)
60 PF00167 FGF: Fibroblast growt 28.5 3.1E+02 0.0067 21.9 8.1 65 291-366 2-67 (122)
61 PHA02713 hypothetical protein; 28.1 4.8E+02 0.01 27.4 10.3 14 408-421 458-471 (557)
62 PF03785 Peptidase_C25_C: Pept 27.5 83 0.0018 23.4 3.1 36 394-429 15-51 (81)
63 PF01436 NHL: NHL repeat; Int 26.5 1.3E+02 0.0027 17.0 3.3 17 406-422 5-21 (28)
64 TIGR01062 parC_Gneg DNA topois 25.6 9.1E+02 0.02 26.5 16.7 85 43-131 518-605 (735)
65 KOG1240 Protein kinase contain 24.4 1.2E+03 0.025 27.2 13.8 27 213-239 1050-1079(1431)
66 KOG0289 mRNA splicing factor [ 23.5 2.7E+02 0.0058 27.9 6.6 66 62-130 351-418 (506)
67 PF00167 FGF: Fibroblast growt 23.4 3.9E+02 0.0084 21.4 8.9 65 343-419 2-66 (122)
68 KOG0646 WD40 repeat protein [G 23.4 7.9E+02 0.017 24.9 18.1 27 106-132 84-112 (476)
69 cd00058 FGF Acidic and basic f 23.3 4E+02 0.0087 21.5 7.5 62 345-419 2-64 (123)
70 PRK02529 petN cytochrome b6-f 23.3 78 0.0017 18.8 1.9 12 362-373 20-31 (33)
71 KOG4441 Proteins containing BT 23.2 8.8E+02 0.019 25.6 11.1 57 355-421 471-530 (571)
72 PLN03215 ascorbic acid mannose 22.6 3.5E+02 0.0075 26.8 7.4 61 214-314 162-225 (373)
73 PF07250 Glyoxal_oxid_N: Glyox 22.5 6.2E+02 0.013 23.4 10.7 70 346-423 114-190 (243)
74 PF08450 SGL: SMP-30/Gluconola 21.5 6E+02 0.013 22.9 11.7 57 405-463 186-244 (246)
75 KOG0289 mRNA splicing factor [ 21.5 3.9E+02 0.0084 26.8 7.3 64 14-78 353-419 (506)
76 PF08887 GAD-like: GAD-like do 21.3 91 0.002 24.8 2.6 22 402-423 77-98 (109)
77 KOG0282 mRNA splicing factor [ 20.8 9E+02 0.02 24.6 16.0 25 409-433 449-473 (503)
78 PHA02713 hypothetical protein; 20.7 4E+02 0.0086 28.0 8.0 15 354-368 346-360 (557)
79 PF07312 DUF1459: Protein of u 20.1 94 0.002 22.8 2.2 14 18-31 54-68 (84)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.1e-52 Score=392.93 Aligned_cols=367 Identities=28% Similarity=0.474 Sum_probs=283.4
Q ss_pred hceeeeeEEEEeecC-CCCCCCC---CCCccceecccC--CCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCcccc
Q 012245 14 MEECKETVVYMWGYL-PGTSPEK---SPILSPIPARLC--GGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT 87 (467)
Q Consensus 14 ~~~~~~~~v~~WG~~-~~~~~~~---~~~~~p~~~~~~--~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~ 87 (467)
........||+||+| +.+++.+ +....|+..+.. +...|++++|||. |+++|++||+||+||.|. .|+||..
T Consensus 62 ~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~-hsl~ld~Dg~lyswG~N~-~G~Lgr~ 139 (476)
T COG5184 62 HLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGN-HSLGLDHDGNLYSWGDND-DGALGRD 139 (476)
T ss_pred hhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCc-eEEeecCCCCEEEeccCc-ccccccc
Confidence 367788999999999 6666654 334667766655 4689999999987 999999999999999998 7999865
Q ss_pred CC--------------C--CcCcccccCC----CCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCC
Q 012245 88 SG--------------K--HGETPEPFPL----PTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG 147 (467)
Q Consensus 88 ~~--------------~--~~~~p~~v~~----~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~ 147 (467)
.. . ...+|..++. ....+|++++||++++++|+++|+||+||.+..+.++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g-------- 211 (476)
T COG5184 140 IHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQG-------- 211 (476)
T ss_pred cccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccc--------
Confidence 51 1 2345555554 113479999999999999999999999998665422211
Q ss_pred ccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEE
Q 012245 148 SFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227 (467)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~al 227 (467)
..+. .-+..++..|..+. ...|+++++|.+|.++|
T Consensus 212 ---~~~~---------------------------------------s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~l 246 (476)
T COG5184 212 ---SYKN---------------------------------------SQKTSIQFTPLKVP---KKAIVQLAAGADHLIAL 246 (476)
T ss_pred ---cccc---------------------------------------cccceeeeeeeecC---chheeeeccCCceEEEE
Confidence 0000 01112334454443 44899999999999999
Q ss_pred ecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecC
Q 012245 228 SDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDA 307 (467)
Q Consensus 228 t~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~ 307 (467)
+++|+||+||+|.+||||.... +....+..++.+-.. ..|+.|+||.+|++||+++
T Consensus 247 t~~G~vy~~Gs~qkgqlG~~~~-e~~~~~~lv~~~f~i-----------------------~~i~~vacG~~h~~al~~~ 302 (476)
T COG5184 247 TNEGKVYGWGSNQKGQLGRPTS-ERLKLVVLVGDPFAI-----------------------RNIKYVACGKDHSLALDED 302 (476)
T ss_pred ecCCcEEEecCCcccccCCchh-hhcccccccCChhhh-----------------------hhhhhcccCcceEEEEcCC
Confidence 9999999999999999999765 222333333322211 3478999999999999999
Q ss_pred CcEEEEeeCCCCcccCCCCC----CccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCC--C
Q 012245 308 GALLTFGWGLYGQCGHGSTN----DQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQA--E 381 (467)
Q Consensus 308 g~v~~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~--~ 381 (467)
|+||+||.|.+||||.+... ....|.....+.++.|..+++|..|+++|..+|.||+||+++++|||..+... .
T Consensus 303 G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~ 382 (476)
T COG5184 303 GEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDV 382 (476)
T ss_pred CeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeec
Confidence 99999999999999998221 23456667777777899999999999999999999999999999999998444 3
Q ss_pred ccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCC-cccceEee---cCCCceEEEEecCCe
Q 012245 382 NVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSID-RNIPSLVP---IHGFLPRNIACGWWH 457 (467)
Q Consensus 382 ~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~-~~~p~~v~---~~~~~v~~v~~G~~h 457 (467)
..|.++. ...++.+|+||..|.++.+.+|.||.||++++|+||.|+... ...|+.+. ++...++...||.+.
T Consensus 383 ~~~~~ls----~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~ 458 (476)
T COG5184 383 STPTKLS----VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQF 458 (476)
T ss_pred CCccccc----cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcce
Confidence 3444332 235799999999999999999999999999999999987654 55688777 567789999999988
Q ss_pred EEEEEc
Q 012245 458 TLLLAE 463 (467)
Q Consensus 458 s~~l~~ 463 (467)
++....
T Consensus 459 ~v~~~~ 464 (476)
T COG5184 459 SVIEET 464 (476)
T ss_pred EEEecc
Confidence 887654
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.4e-46 Score=355.50 Aligned_cols=335 Identities=25% Similarity=0.447 Sum_probs=260.3
Q ss_pred ceeEEEecCCcEEEecCCCCCCCccccCCCCc-CcccccCCC--CCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCC
Q 012245 61 GFALATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFPLP--TEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSA 137 (467)
Q Consensus 61 ~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~-~~p~~v~~~--~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g 137 (467)
.|..+++.-..||+||+|. ..+||++..... ..|+..+.. +...|++++||..|+++|++||+||+||.|..|+||
T Consensus 59 ~~~~~~~~~~~v~~~Gsn~-~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg 137 (476)
T COG5184 59 KHTHLLVKMASVYSWGSNG-MNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG 137 (476)
T ss_pred cchhhhhheeeeEEEecCc-ceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence 3666789999999999998 799999876555 777776655 558899999999999999999999999999999887
Q ss_pred ccc-cccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEec----CCCC
Q 012245 138 KVT-RDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTL----NPGV 212 (467)
Q Consensus 138 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~----~~~~ 212 (467)
+.+ .|.+ ++. ....- ........+|..++. ....
T Consensus 138 r~~~~~~~-------~~~------------------------~~~~~----------~~~~~~~~tP~~v~~~s~~~s~~ 176 (476)
T COG5184 138 RDIHKDIC-------DQN------------------------NDIID----------FDDYELESTPFKVPGGSSAKSHL 176 (476)
T ss_pred cccccccc-------ccc------------------------ccccc----------cchhhcccCCceeeccccccCCh
Confidence 655 1100 000 00000 001112356777766 1234
Q ss_pred cEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCC-C--c--cccCCcccccccccccCCCCcceeecCcccCCCCCC
Q 012245 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR-I--K--MVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAG 287 (467)
Q Consensus 213 ~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~-~--~--~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (467)
+|++++||++++++|+++|+||+||.+..+.++.+.. . + ....|-+++ .
T Consensus 177 ~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~----------------------- 230 (476)
T COG5184 177 RVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---K----------------------- 230 (476)
T ss_pred heEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---c-----------------------
Confidence 8999999999999999999999999999998888732 1 1 234444443 1
Q ss_pred CccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCc-cEEEEEeCCCeEEEEEcCCcEEEEe
Q 012245 288 RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDI-QVEQIAAGLWHTVCISVEGRVYVFG 366 (467)
Q Consensus 288 ~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~i~~v~~G~~~~~al~~~g~vy~wG 366 (467)
..|+++++|.+|.++|+++|++|+||+|..||||.........+..+..+... .|..|+||.+|++||+++|++|+||
T Consensus 231 -~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G 309 (476)
T COG5184 231 -KAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWG 309 (476)
T ss_pred -hheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEec
Confidence 56999999999999999999999999999999999888776666655543322 3688999999999999999999999
Q ss_pred CCCCCcccCCCCCC----CccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCC--CCCcccceE
Q 012245 367 GNQFGQLGTGVDQA----ENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGD--SIDRNIPSL 440 (467)
Q Consensus 367 ~n~~gqlG~~~~~~----~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~--~~~~~~p~~ 440 (467)
.|.+||||.++... ...|..... +....|.+|++|..|+++|..+|.||+||++..+|||..+ ....+.|.+
T Consensus 310 ~n~fgqlg~~~~~~~~a~~tk~~~~~~--~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ 387 (476)
T COG5184 310 VNIFGQLGAGSDGEIGALTTKPNYKQL--LSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTK 387 (476)
T ss_pred cchhcccccCcccccceeecccccccc--CCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccc
Confidence 99999999982211 233444332 4566799999999999999999999999999999999998 444555665
Q ss_pred eecCCCceEEEEecCCeEEEEEcCCCC
Q 012245 441 VPIHGFLPRNIACGWWHTLLLAETTQI 467 (467)
Q Consensus 441 v~~~~~~v~~v~~G~~hs~~l~~~g~i 467 (467)
+... .++.+++||..|+++.+++|.+
T Consensus 388 ls~~-~~~~~v~~gt~~~~~~t~~gsv 413 (476)
T COG5184 388 LSVA-IKLEQVACGTHHNIARTDDGSV 413 (476)
T ss_pred cccc-cceEEEEecCccceeeccCCce
Confidence 5532 3799999999999999999753
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.2e-43 Score=312.72 Aligned_cols=372 Identities=22% Similarity=0.345 Sum_probs=282.1
Q ss_pred eeeEEEEeecCC------CCCCCCCCCccceecccCCCCCceeeecCCcc-eeEEEecCCcEEEecCCCCCCCccccCCC
Q 012245 18 KETVVYMWGYLP------GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGK 90 (467)
Q Consensus 18 ~~~~v~~WG~~~------~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~-~~~~l~~~G~vy~wG~~~~~g~lg~~~~~ 90 (467)
..+.+...|.-. -...+......|.+.+-+.+.+|+-|++|-+. |+++|+-+|++|+||+|. .||||.++.+
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNe-kGQLGhgD~k 96 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNE-KGQLGHGDMK 96 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCc-cCccCccchh
Confidence 345555555542 12223335667888888888999999888544 889999999999999997 8999999888
Q ss_pred CcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCc
Q 012245 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170 (467)
Q Consensus 91 ~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (467)
....|+.|+-+...+|++.+||++|+++||++|+||.+|.|.+||||....-
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~---------------------------- 148 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAK---------------------------- 148 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccc----------------------------
Confidence 8899999998888999999999999999999999999999999977742210
Q ss_pred ccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCC
Q 012245 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI 250 (467)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~ 250 (467)
.+ ...+|.+.- ....|+.|+||..|++.|+..+.+...|...+||||++.+.
T Consensus 149 -------------------------~~-v~s~~~~~~--~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~ 200 (443)
T KOG1427|consen 149 -------------------------NE-VESTPLPCV--VSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDN 200 (443)
T ss_pred -------------------------cc-cccCCCccc--cCccceeeccccceEEEeecccceeecCCccccccccCcch
Confidence 01 111111111 12279999999999999999999999999999999998764
Q ss_pred ccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCcc
Q 012245 251 KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQL 330 (467)
Q Consensus 251 ~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~ 330 (467)
+..-....+..--. ...++..+ ......+|++++||.+|++|++++++||+||-+-||.||+....+..
T Consensus 201 ~~~~~~~~~~~~~e---~~pr~~~i--------~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEm 269 (443)
T KOG1427|consen 201 EFNMKDSSVRLAYE---AQPRPKAI--------ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEM 269 (443)
T ss_pred hhccccccceeeee---cCCCcccc--------ccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhH
Confidence 43222111110000 00000000 01122789999999999999999999999999999999999999999
Q ss_pred CceeccccC--CccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEE
Q 012245 331 RPSYASSLM--DIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSA 408 (467)
Q Consensus 331 ~p~~v~~~~--~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~ 408 (467)
.|+.++.+. +.--.++.||...++.+.+-|.||.||.+.. ....-..|.++- ++...++..+.++..|.+
T Consensus 270 vpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~--dlsgwnl~~~~~~~~h~~ 341 (443)
T KOG1427|consen 270 VPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMM--DLSGWNLRWMDSGSMHHF 341 (443)
T ss_pred HHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchh--hcCCccCCCcCccceeee
Confidence 999988654 3335678999999999999999999998762 222344565554 377889999999999987
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCC--CCcccceEee-cCCCceEEEEecCCeEEEEEcCCC
Q 012245 409 VLTEDGQVLSWGWNKYGQLGLGDS--IDRNIPSLVP-IHGFLPRNIACGWWHTLLLAETTQ 466 (467)
Q Consensus 409 al~~~G~vy~wG~n~~gqlG~g~~--~~~~~p~~v~-~~~~~v~~v~~G~~hs~~l~~~g~ 466 (467)
+- .|-.+.+||...++.++-+.. ..+..|.+++ +.+..|.+|+||+.|+++|++...
T Consensus 342 v~-ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~t~ 401 (443)
T KOG1427|consen 342 VG-ADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRTD 401 (443)
T ss_pred ec-ccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEcccc
Confidence 64 456899999988887755543 2345688888 668899999999999999987643
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=8.9e-39 Score=283.49 Aligned_cols=285 Identities=31% Similarity=0.470 Sum_probs=239.0
Q ss_pred CcccccCCCCCCCeeEEecCc--cEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCc
Q 012245 93 ETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170 (467)
Q Consensus 93 ~~p~~v~~~~~~~i~~is~G~--~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (467)
..|.++.-....+|..|+.|- .|+++|+.+|+.|.||.|..||||..
T Consensus 45 ~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg------------------------------- 93 (443)
T KOG1427|consen 45 VSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG------------------------------- 93 (443)
T ss_pred ccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCcc-------------------------------
Confidence 445555555556777777664 79999999999999999999977742
Q ss_pred ccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCC
Q 012245 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI 250 (467)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~ 250 (467)
|......|+.|..+...+|++.+||++|+++||++|.||++|.|.+||||+++..
T Consensus 94 -------------------------D~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~ 148 (443)
T KOG1427|consen 94 -------------------------DMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAK 148 (443)
T ss_pred -------------------------chhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccc
Confidence 2334567888888888899999999999999999999999999999999999875
Q ss_pred ccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCC--
Q 012245 251 KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTND-- 328 (467)
Q Consensus 251 ~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~-- 328 (467)
..+..|..+.... .+|+.|+||.++++.|+..+.+.++|.-+|||||++....
T Consensus 149 ~~v~s~~~~~~~~-------------------------~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~ 203 (443)
T KOG1427|consen 149 NEVESTPLPCVVS-------------------------DEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFN 203 (443)
T ss_pred cccccCCCccccC-------------------------ccceeeccccceEEEeecccceeecCCccccccccCcchhhc
Confidence 4444444433222 5699999999999999999999999999999999986432
Q ss_pred ------------ccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCc
Q 012245 329 ------------QLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKR 396 (467)
Q Consensus 329 ------------~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~ 396 (467)
+..|..|..+.+.+|++++||.+|++|+++++.||.||-+.||.||+.+..+...|+++++.+.+..-
T Consensus 204 ~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg 283 (443)
T KOG1427|consen 204 MKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRG 283 (443)
T ss_pred cccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCC
Confidence 23567778888999999999999999999999999999999999999999999999999987777777
Q ss_pred eEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEee-cCCCceEEEEecCCeEEEEEcC
Q 012245 397 AKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVP-IHGFLPRNIACGWWHTLLLAET 464 (467)
Q Consensus 397 i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~-~~~~~v~~v~~G~~hs~~l~~~ 464 (467)
-.++.||+..++++.+-|.||.||.+.. ..++-..|.++. +.+.++..+.|+..|.++-.++
T Consensus 284 ~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v~ad~ 346 (443)
T KOG1427|consen 284 PPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFVGADS 346 (443)
T ss_pred CcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeeecccc
Confidence 8899999999999999999999999763 223445677665 6788899999999998876554
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=3.9e-28 Score=240.73 Aligned_cols=312 Identities=22% Similarity=0.272 Sum_probs=232.4
Q ss_pred eEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCC--CCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccc
Q 012245 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVT 140 (467)
Q Consensus 63 ~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~--~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~ 140 (467)
..++|...+||.||+|. +--||.++.+....|..|.++.. .=+.||+.+.+|+++|++.|+||++|...-|-+|
T Consensus 135 ~~~~d~pndvy~wG~N~-N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG--- 210 (1267)
T KOG0783|consen 135 HPVLDLPNDVYGWGTNV-NNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLG--- 210 (1267)
T ss_pred ccccCCccceeEecccc-cccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccC---
Confidence 35688899999999998 89999999999999999987753 4488999999999999999999999954444333
Q ss_pred cccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeC
Q 012245 141 RDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAG 220 (467)
Q Consensus 141 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G 220 (467)
.+++.+...|+.|+.+.+.+|++|++.
T Consensus 211 -----------------------------------------------------~gdeq~~~iPkrV~gL~gh~~~qisvs 237 (1267)
T KOG0783|consen 211 -----------------------------------------------------FGDEQYNFIPKRVPGLIGHKVIQISVS 237 (1267)
T ss_pred -----------------------------------------------------cCcccccccccccccccccceEEEEee
Confidence 235667788999999889999999999
Q ss_pred CCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCce
Q 012245 221 GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRH 300 (467)
Q Consensus 221 ~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~ 300 (467)
..|+++||++|-||+||-|.++|||..+....-..|.+|...... ....|+.+++|..|
T Consensus 238 ~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~k---------------------g~~~iIgvaAg~~h 296 (1267)
T KOG0783|consen 238 HTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIK---------------------GFKQIIGVAAGKSH 296 (1267)
T ss_pred cceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhc---------------------chhhhhhhhcccce
Confidence 999999999999999999999999998876666777777644432 11469999999999
Q ss_pred EEEEecCCcEEEEeeCCCCcccCCCCCC-ccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCC
Q 012245 301 SAVVTDAGALLTFGWGLYGQCGHGSTND-QLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQ 379 (467)
Q Consensus 301 s~~lt~~g~v~~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~ 379 (467)
+++.|+ -.||+||.| .||||+.+... ...|+.+.. ....|.-|+|-..-+++++.++.+|++-.-..--+-....
T Consensus 297 sVawt~-~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~- 372 (1267)
T KOG0783|consen 297 SVAWTD-TDVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFNVD- 372 (1267)
T ss_pred eeeeec-ceEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEecccceecCcchh-
Confidence 999997 569999998 69999876544 457766643 3457999999999999999999999987543222211111
Q ss_pred CCccceeeecCccC--CCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEeecCCCceEEEEecCCe
Q 012245 380 AENVPKLLETPILE--SKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWH 457 (467)
Q Consensus 380 ~~~~p~~v~~~~~~--~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~v~~v~~G~~h 457 (467)
......+..-.+. -.++.+..+...--++||+-|+||.|-++..-. .+-.+.++.+ ..|.+|+--.+.
T Consensus 373 -~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-------~~c~ftp~r~--~~isdIa~~~N~ 442 (1267)
T KOG0783|consen 373 -FLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-------TSCKFTPLRI--FEISDIAWTANS 442 (1267)
T ss_pred -ccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-------eeeeccccee--eehhhhhhccce
Confidence 1111111111111 124667777777889999999999998755211 1111222221 135566666688
Q ss_pred EEEEEcCCC
Q 012245 458 TLLLAETTQ 466 (467)
Q Consensus 458 s~~l~~~g~ 466 (467)
-+++++||.
T Consensus 443 ~~~~t~dGc 451 (1267)
T KOG0783|consen 443 LILCTRDGC 451 (1267)
T ss_pred EEEEecCcc
Confidence 888888874
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=3.2e-26 Score=227.29 Aligned_cols=307 Identities=20% Similarity=0.261 Sum_probs=224.6
Q ss_pred hceeeeeEEEEeecC-CCCCCCCC--CCccceecccCC--CCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccC
Q 012245 14 MEECKETVVYMWGYL-PGTSPEKS--PILSPIPARLCG--GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTS 88 (467)
Q Consensus 14 ~~~~~~~~v~~WG~~-~~~~~~~~--~~~~p~~~~~~~--~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~ 88 (467)
...+....||.||.| +..||.+. +...|..|.++. +.=+.+|+++.. |+++|++.|.||++|.+. .|+||.+.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kf-HSvfl~~kgqvY~cGhG~-GGRlG~gd 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKF-HSVFLTEKGQVYVCGHGA-GGRLGFGD 213 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhc-eeeEecCCCcEEEeccCC-CCccCcCc
Confidence 456777999999999 77777765 446677777664 566778888865 999999999999999998 99999998
Q ss_pred CCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCC
Q 012245 89 GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS 168 (467)
Q Consensus 89 ~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 168 (467)
......|.+|+.+...+|.+|++...|+++||++|-||+||.|.++|||.....
T Consensus 214 eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~-------------------------- 267 (1267)
T KOG0783|consen 214 EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE-------------------------- 267 (1267)
T ss_pred ccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch--------------------------
Confidence 888888988998888999999999999999999999999999999977743211
Q ss_pred CcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCC
Q 012245 169 DKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS 248 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~ 248 (467)
...+...+..|..++..+ .|+.|++|..|++|.|+. .||.||.| .||||+.+
T Consensus 268 ------------------------~~~~~p~qI~a~r~kg~~--~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~ 319 (1267)
T KOG0783|consen 268 ------------------------LKKDDPIQITARRIKGFK--QIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISD 319 (1267)
T ss_pred ------------------------hhcCchhhhhhHhhcchh--hhhhhhcccceeeeeecc-eEEEeccc-CceecCCC
Confidence 001111223333333222 799999999999999985 89999998 59999998
Q ss_pred CCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCC
Q 012245 249 RIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTND 328 (467)
Q Consensus 249 ~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~ 328 (467)
....+..|+.+.... ..|.-++|...-|++++.++.+|++-+-..-.+ .....
T Consensus 320 n~~~Vt~Pr~l~~~~-------------------------~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~--~~n~~ 372 (1267)
T KOG0783|consen 320 NISVVTTPRRLAGLL-------------------------SPVIHVVATTRATVCLLQNNSIIAFADYNQVKL--PFNVD 372 (1267)
T ss_pred CCceeecchhhcccc-------------------------cceEEEEecCccEEEEecCCcEEEEecccceec--Ccchh
Confidence 888888887553322 568999999999999999999999875322111 11111
Q ss_pred ccCceeccc--cC--CccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecC
Q 012245 329 QLRPSYASS--LM--DIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGA 404 (467)
Q Consensus 329 ~~~p~~v~~--~~--~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~ 404 (467)
...-..|.. +. -..+.+..+....-+++|+-|.||+|-.+..-. .+-...|..+- .|.+|+--.
T Consensus 373 ~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~-------~isdIa~~~ 440 (1267)
T KOG0783|consen 373 FLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRIF-------EISDIAWTA 440 (1267)
T ss_pred ccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeecccceee-------ehhhhhhcc
Confidence 111111210 11 123556677778889999999999999654211 11123343332 366788777
Q ss_pred CeEEEEeCCCc
Q 012245 405 RHSAVLTEDGQ 415 (467)
Q Consensus 405 ~h~~al~~~G~ 415 (467)
+..+++|.||.
T Consensus 441 N~~~~~t~dGc 451 (1267)
T KOG0783|consen 441 NSLILCTRDGC 451 (1267)
T ss_pred ceEEEEecCcc
Confidence 89999999993
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=8.4e-23 Score=210.34 Aligned_cols=359 Identities=20% Similarity=0.263 Sum_probs=223.9
Q ss_pred eeeeEEEEeecCC--CCCCCCCCCccceecccCCCCCceeeecCCcc-eeEEEecCCcEEEecCCCCCCCccccCCCCcC
Q 012245 17 CKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGE 93 (467)
Q Consensus 17 ~~~~~v~~WG~~~--~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~-~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~ 93 (467)
.+.|+||.=|..+ +....+ ... ....++ ++|++++.|=+. +......+|.++.-|+....|.+..
T Consensus 495 a~sGKvYYaGn~t~~Gl~e~G-~nW--mEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~~~~Rr------- 562 (3738)
T KOG1428|consen 495 ARSGKVYYAGNGTRFGLFETG-NNW--MELCLP--EPIVQISVGIDTIMFRSGAGHGWIASVDDKKRNGRLRR------- 562 (3738)
T ss_pred hcCccEEEecCccEEeEEccC-Cce--EEecCC--CceEEEEeccchhheeeccCcceEEeccCcccccchhh-------
Confidence 4678999988863 111111 111 122222 678899888554 3344467888888887654444321
Q ss_pred cccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccC
Q 012245 94 TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAG 173 (467)
Q Consensus 94 ~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (467)
.++ .+..+|+.+.+...---.+.++|++|..|....-
T Consensus 563 ---~~P-~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------------------------------------- 599 (3738)
T KOG1428|consen 563 ---LVP-SNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------------------------------------- 599 (3738)
T ss_pred ---cCC-CCcceeEEEeeeeEEEEEEccCCeEEeecceeEE---------------------------------------
Confidence 111 2235788876544444567889999998843210
Q ss_pred cceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccc
Q 012245 174 EEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMV 253 (467)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~ 253 (467)
.......+..+.+.-|.+++.|..|.++++.+|.||.||.|..+|+|+-......
T Consensus 600 -------------------------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt 654 (3738)
T KOG1428|consen 600 -------------------------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTT 654 (3738)
T ss_pred -------------------------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCccccccccccccc
Confidence 0011223444556679999999999999999999999999999999996654444
Q ss_pred cCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcc--------cCCC
Q 012245 254 PTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQC--------GHGS 325 (467)
Q Consensus 254 ~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gql--------G~~~ 325 (467)
..|..-...+...........+..-. ....+.....-..++||.- -.-.|.+-.+|.++.+.+ |...
T Consensus 655 ~s~~~s~~~e~~iCP~G~HtW~~dt~-~VCa~CG~Cs~~GvaC~~~----~RP~G~mC~CG~GES~C~~CG~Cr~C~e~t 729 (3738)
T KOG1428|consen 655 SSPRHSGRQEYQICPIGEHTWLTDTP-SVCAQCGLCSARGVACGRV----PRPKGTMCHCGVGESTCLRCGLCRPCGEVT 729 (3738)
T ss_pred CCcccccceeecccCCccceeecCCc-chhhhcccccccccccccC----CCCCCcccccCCCcccceeccccccccCcC
Confidence 44443322221111111111000000 0000111122222333321 112345555555544332 1111
Q ss_pred CC-------------------CccCceecc---ccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCcc
Q 012245 326 TN-------------------DQLRPSYAS---SLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENV 383 (467)
Q Consensus 326 ~~-------------------~~~~p~~v~---~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~ 383 (467)
.. ....|..|. ...+.++.+|+||.+|+++|.+|++||.||+|.+||||.|+..+...
T Consensus 730 E~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~ 809 (3738)
T KOG1428|consen 730 EPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNT 809 (3738)
T ss_pred CcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCC
Confidence 00 112343333 22356899999999999999999999999999999999999999999
Q ss_pred ceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCC---cccceEee----cCCCceEEEEecCC
Q 012245 384 PKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSID---RNIPSLVP----IHGFLPRNIACGWW 456 (467)
Q Consensus 384 p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~---~~~p~~v~----~~~~~v~~v~~G~~ 456 (467)
|+.+.. +.+..|++|++|++|++++..||+||++|.-..|||+..-.+. ...|.++. -.+.+..-|.+.++
T Consensus 810 Pq~V~~--~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGD 887 (3738)
T KOG1428|consen 810 PQQVIL--PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGD 887 (3738)
T ss_pred cceEEc--CCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCC
Confidence 999886 5577899999999999999999999999999999999753322 23566665 22556777877777
Q ss_pred eEEEEE
Q 012245 457 HTLLLA 462 (467)
Q Consensus 457 hs~~l~ 462 (467)
.+++-.
T Consensus 888 ss~i~~ 893 (3738)
T KOG1428|consen 888 SSIIHS 893 (3738)
T ss_pred cceeeh
Confidence 776643
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.9e-23 Score=213.70 Aligned_cols=294 Identities=21% Similarity=0.284 Sum_probs=187.5
Q ss_pred CCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEe
Q 012245 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (467)
Q Consensus 49 ~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~w 128 (467)
.++|+.+++.+--|+ ++.++|++|..|.... ........+.-++..-|.+++.|..|.++++.+|+||.|
T Consensus 568 ~rKIv~v~~s~~VY~-~vSenGkifM~G~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~ 637 (3738)
T KOG1428|consen 568 RRKIVHVCASGHVYG-YVSENGKIFMGGLHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTW 637 (3738)
T ss_pred cceeEEEeeeeEEEE-EEccCCeEEeecceeE---------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEE
Confidence 578888877654343 6899999999998652 111122334445567799999999999999999999999
Q ss_pred eCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEec
Q 012245 129 GWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTL 208 (467)
Q Consensus 129 G~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~ 208 (467)
|.|+.+|+|+ -....+...|..+-+....+++.....|.. ..|.....
T Consensus 638 GlNN~~QCGR------------------VEs~sTt~s~~~s~~~e~~iCP~G~HtW~~--------------dt~~VCa~ 685 (3738)
T KOG1428|consen 638 GLNNMNQCGR------------------VESTSTTSSPRHSGRQEYQICPIGEHTWLT--------------DTPSVCAQ 685 (3738)
T ss_pred ecCCcccccc------------------cccccccCCcccccceeecccCCccceeec--------------CCcchhhh
Confidence 9999985554 322222222222222222222222222221 12222222
Q ss_pred CCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCC-----CccccCCcccccccccccCCCCcceeecCcccCC
Q 012245 209 NPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR-----IKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSS 283 (467)
Q Consensus 209 ~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~-----~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 283 (467)
-.......++||+. -.-.|.+..+|.++.+.+-.+-- ......|-.-...............+.+......
T Consensus 686 CG~Cs~~GvaC~~~----~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~s 761 (3738)
T KOG1428|consen 686 CGLCSARGVACGRV----PRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILS 761 (3738)
T ss_pred cccccccccccccC----CCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeec
Confidence 22223444555542 23467788888776655443211 0111122221111111111111111111111122
Q ss_pred CCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEE
Q 012245 284 GKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVY 363 (467)
Q Consensus 284 ~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy 363 (467)
+..-+.++.+++||..|+++|.+|++||++|.|.+||||+|++.....|+.|..+.+..|++|++|.+|++++..||.||
T Consensus 762 q~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVF 841 (3738)
T KOG1428|consen 762 QGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVF 841 (3738)
T ss_pred cCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEE
Confidence 23345889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccCCCCCC---Cccceeee
Q 012245 364 VFGGNQFGQLGTGVDQA---ENVPKLLE 388 (467)
Q Consensus 364 ~wG~n~~gqlG~~~~~~---~~~p~~v~ 388 (467)
.||.-..|||+.+.... ...|.+++
T Consensus 842 TFGaF~KGQL~RP~~e~~~WNA~Pe~v~ 869 (3738)
T KOG1428|consen 842 TFGAFGKGQLARPAGEKAGWNAIPEKVS 869 (3738)
T ss_pred EeccccCccccCccccccccccCCCcCC
Confidence 99999999999865432 34565554
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.32 E-value=2e-12 Score=88.78 Aligned_cols=49 Identities=51% Similarity=0.880 Sum_probs=44.4
Q ss_pred CCcEEEEeCCCCCCCC-CCCCCCcccceEee-cCCCceEEEEecCCeEEEE
Q 012245 413 DGQVLSWGWNKYGQLG-LGDSIDRNIPSLVP-IHGFLPRNIACGWWHTLLL 461 (467)
Q Consensus 413 ~G~vy~wG~n~~gqlG-~g~~~~~~~p~~v~-~~~~~v~~v~~G~~hs~~l 461 (467)
||+||+||.|.+|||| .++......|++|+ +.+.+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 77777888999999 4466899999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.24 E-value=1e-11 Score=85.18 Aligned_cols=50 Identities=28% Similarity=0.487 Sum_probs=47.0
Q ss_pred CCcEEEEeeCCCCccc-CCCCCCccCceeccccCCccEEEEEeCCCeEEEE
Q 012245 307 AGALLTFGWGLYGQCG-HGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCI 356 (467)
Q Consensus 307 ~g~v~~wG~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al 356 (467)
||+||+||.|.+|||| .........|++++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7777888999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.22 E-value=1.7e-11 Score=73.06 Aligned_cols=30 Identities=40% Similarity=0.782 Sum_probs=26.1
Q ss_pred EEEEEeCCCeeEEEecCCcEEEEEcCCCcc
Q 012245 214 ITKVAAGGRHTLILSDMGQVWGWGYGGEGQ 243 (467)
Q Consensus 214 i~~Ia~G~~h~~alt~~G~vy~wG~n~~gq 243 (467)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.19 E-value=3.3e-11 Score=71.84 Aligned_cols=30 Identities=47% Similarity=0.961 Sum_probs=26.1
Q ss_pred eEEEEecCCeEEEEeCCCcEEEEeCCCCCC
Q 012245 397 AKVVSCGARHSAVLTEDGQVLSWGWNKYGQ 426 (467)
Q Consensus 397 i~~i~~G~~h~~al~~~G~vy~wG~n~~gq 426 (467)
|++|++|.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=9.2e-13 Score=133.59 Aligned_cols=179 Identities=27% Similarity=0.415 Sum_probs=134.1
Q ss_pred cCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCC
Q 012245 208 LNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAG 287 (467)
Q Consensus 208 ~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (467)
...-.+|.+++||.+|+++++..|++|.||.|.+||+|.+....... |.+++....
T Consensus 10 ~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g----------------------- 65 (850)
T KOG0941|consen 10 ILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKG----------------------- 65 (850)
T ss_pred HHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcC-----------------------
Confidence 33334799999999999999999999999999999999995444433 777776655
Q ss_pred CccEEEEeecCceEEEEec-------CCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEE-cC
Q 012245 288 RSYVKEIACGGRHSAVVTD-------AGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCIS-VE 359 (467)
Q Consensus 288 ~~~i~~ia~G~~~s~~lt~-------~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~-~~ 359 (467)
.+..+|+||.+|++++.. .+.++++|....+|+|+........|..+..+.+..+.+|+||..|++++. .-
T Consensus 66 -~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l 144 (850)
T KOG0941|consen 66 -VPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRL 144 (850)
T ss_pred -CcHHHHhcCCCcchhhhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhh
Confidence 567888889888877655 999999999999999998888888899988888889999999999999854 56
Q ss_pred CcEEEEeCCCCCcccCCCCCCCccceeeecCcc-CCCceEEEEecCCeEEEEeCCC
Q 012245 360 GRVYVFGGNQFGQLGTGVDQAENVPKLLETPIL-ESKRAKVVSCGARHSAVLTEDG 414 (467)
Q Consensus 360 g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~-~~~~i~~i~~G~~h~~al~~~G 414 (467)
|++|.+|.+..| .+.......+.+...++- ....+..+.+|...+..+...+
T Consensus 145 ~qsf~~~~~~sG---k~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 145 GQSFSFGKGASG---KGVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred cceeecccCCCC---CceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 899999988776 111111111111121111 1123455778888888876554
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-12 Score=130.99 Aligned_cols=172 Identities=26% Similarity=0.401 Sum_probs=135.3
Q ss_pred ccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEc-------CCc
Q 012245 289 SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISV-------EGR 361 (467)
Q Consensus 289 ~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~-------~g~ 361 (467)
..|.+++||.+|+++++..|++|.||.|.+||+|.+.......|..++.+.+.+..+|+||.+|++++.. .|.
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~ 93 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGK 93 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhcc
Confidence 5699999999999999999999999999999999985544445999999999999999999999988766 999
Q ss_pred EEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEE-eCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 012245 362 VYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVL-TEDGQVLSWGWNKYGQLGLGDSIDRNIPSL 440 (467)
Q Consensus 362 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al-~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~ 440 (467)
++.+|....+|+|.........|..+.- +.+..+..|+||..|+.++ ..-|++|..|.+..| .+.-.+...+.+
T Consensus 94 ~fs~Ga~~~~q~~h~~~~~~~~~~~v~e--~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG---k~~i~s~s~~~~ 168 (850)
T KOG0941|consen 94 VFSFGAGSTGQLGHSLTENEVLPLLVLE--LIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG---KGVIVSLSGEDL 168 (850)
T ss_pred ccccCCcccccccccccccccccHHHHH--HHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC---Cceeeccchhhh
Confidence 9999999999999976666777766543 5577899999999999985 556899999998887 111111111211
Q ss_pred eecC----CCceEEEEecCCeEEEEEcCC
Q 012245 441 VPIH----GFLPRNIACGWWHTLLLAETT 465 (467)
Q Consensus 441 v~~~----~~~v~~v~~G~~hs~~l~~~g 465 (467)
.... ...+..+.+|.+.++.+...+
T Consensus 169 l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 169 LRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred cccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 1111 234666788888888876543
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=96.16 E-value=0.11 Score=58.46 Aligned_cols=234 Identities=17% Similarity=0.144 Sum_probs=131.6
Q ss_pred EEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCC--ccccCCcccccccccccCCCCcceeecCcccCCCC------
Q 012245 214 ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI--KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGK------ 285 (467)
Q Consensus 214 i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~--~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------ 285 (467)
.+.=..|..|+++|.+++.=|.=|+|-.-.|=+.+.. .....|..-..+.. ++.-...+..+.+..+..
T Consensus 560 likd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl---~r~G~v~L~~G~i~~wD~ttq~W~ 636 (1774)
T PF11725_consen 560 LIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDL---GRAGLVGLQDGKIQYWDSTTQCWK 636 (1774)
T ss_pred EEeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhcc---ccccceeeccceEeeecCcchhhh
Confidence 3444578999999999999998888866555444331 11112222222211 222233333333322221
Q ss_pred -CCCccEEEEeecCceEEEEecCCcEEEEeeCC-CCcccCCCCCCcc------Cc---eeccccCCccEEEEEe-CCCeE
Q 012245 286 -AGRSYVKEIACGGRHSAVVTDAGALLTFGWGL-YGQCGHGSTNDQL------RP---SYASSLMDIQVEQIAA-GLWHT 353 (467)
Q Consensus 286 -~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~-~gqlG~~~~~~~~------~p---~~v~~~~~~~i~~v~~-G~~~~ 353 (467)
.....|.++.-|-+-..++.++|+|-.---+. +.-+-++...... .| ..+..+++..|..++. +.++.
T Consensus 637 ~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~~~f 716 (1774)
T PF11725_consen 637 DAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLEDRVITAFAVVNDNKF 716 (1774)
T ss_pred hccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCCcCcceeEEEEcCCce
Confidence 11125566666777777777777776554332 1112222221111 11 2344555555666554 56888
Q ss_pred EEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeE-EEEeCCCcEEEEeCCCCCCCCCCCC
Q 012245 354 VCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHS-AVLTEDGQVLSWGWNKYGQLGLGDS 432 (467)
Q Consensus 354 ~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~-~al~~~G~vy~wG~n~~gqlG~g~~ 432 (467)
++|++.|++-..=. ...|..++.+.++ ..|+.|+.=..|. .|++.+|+||.-=....-..-.+ .
T Consensus 717 vald~qg~lt~h~k-------------~g~p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~-~ 781 (1774)
T PF11725_consen 717 VALDDQGDLTAHQK-------------PGRPVPLSRPGLS-GEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEG-D 781 (1774)
T ss_pred EEeccCCccccccC-------------CCCCccCCCCCCC-cchhheeeccccceeEecCCCceeecCHHHhhCcccC-C
Confidence 89999988765331 1126666665553 4899999998865 67999999997433221111111 1
Q ss_pred CCcccceEeecC-CCceEEEEecCCeEEEEEcCC
Q 012245 433 IDRNIPSLVPIH-GFLPRNIACGWWHTLLLAETT 465 (467)
Q Consensus 433 ~~~~~p~~v~~~-~~~v~~v~~G~~hs~~l~~~g 465 (467)
......++|.++ +.+|..+....+|.+.+..++
T Consensus 782 ~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 782 QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 122455666655 567889999999988887655
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.31 E-value=2.8 Score=42.58 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=51.8
Q ss_pred cEEEEEeCC-CeeEEEecCCcEE-EEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCcc
Q 012245 213 KITKVAAGG-RHTLILSDMGQVW-GWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSY 290 (467)
Q Consensus 213 ~i~~Ia~G~-~h~~alt~~G~vy-~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (467)
++.+|++|- .-..|++.+|.|| --|..+..+.|..= +.+.+|+.. ..
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsW--kdI~tP~~a-----------------------------~~ 276 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSW--KDIVTPRQA-----------------------------LE 276 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchh--hhccCcccc-----------------------------cc
Confidence 589999998 8888999999975 45666655555432 233444433 34
Q ss_pred EEEEeecCceEEEEecCCcEEE
Q 012245 291 VKEIACGGRHSAVVTDAGALLT 312 (467)
Q Consensus 291 i~~ia~G~~~s~~lt~~g~v~~ 312 (467)
++.|+.|....-+||.+|.+|.
T Consensus 277 ~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 277 PVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred eEEEEeccceEEEEecCCcEEE
Confidence 8999999999999999999985
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.03 E-value=2 Score=43.53 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=49.9
Q ss_pred cEEEEeecC-ceEEEEecCCcEEE-EeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEE
Q 012245 290 YVKEIACGG-RHSAVVTDAGALLT-FGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVF 365 (467)
Q Consensus 290 ~i~~ia~G~-~~s~~lt~~g~v~~-wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~w 365 (467)
.+.+|++|. ....+++.+|.||. -|-..+.+.|..=. +...|.... .++.|+.|....-+|+++|.||.-
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 488999998 88899999999874 45555444443111 223333222 289999999999999999998865
No 18
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=0.047 Score=58.92 Aligned_cols=132 Identities=19% Similarity=0.227 Sum_probs=82.9
Q ss_pred CCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeeccc
Q 012245 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182 (467)
Q Consensus 103 ~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (467)
..+++.|-+-.+..+||..+|++|.|-+.+.-.+. .++ .+.+.
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEgld--------------------dpl--------------ai~kn--- 415 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLD--------------------DPL--------------AINKN--- 415 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCC--------------------Chh--------------hcccC---
Confidence 36788999999999999999999999976532000 000 00000
Q ss_pred ccccccCCCCCCCCCcccccceE-EecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCcccc-CCcccc
Q 012245 183 SSAREESENPASGDEFFTLSPCL-VTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVP-TPHLIP 260 (467)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~p~~-v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~-~p~~i~ 260 (467)
...|.. .-..-+.+|+.+++..-..-++|++|+|.+|=.. +|.+...+... ..+++.
T Consensus 416 -----------------~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWlDE----cgagV~fkLa~ea~Tkie 474 (3015)
T KOG0943|consen 416 -----------------LDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWLDE----CGAGVAFKLAHEAQTKIE 474 (3015)
T ss_pred -----------------CCCCccceecccCCeeEEeecCceeeeeeecCCchhhHHhh----hhhhhhhhhhhhhhhhhh
Confidence 011111 1112345899999999999999999999999431 22221111111 111221
Q ss_pred cccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCC
Q 012245 261 CLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317 (467)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~ 317 (467)
.. ...+++..|...|.+|..+|+-+|-||--.
T Consensus 475 ed-------------------------~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 475 ED-------------------------GEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hh-------------------------hHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 11 145788889999999999999999999543
No 19
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.98 E-value=6.7 Score=45.11 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=70.3
Q ss_pred EecCCCCcEEEEE-eCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCC
Q 012245 206 VTLNPGVKITKVA-AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSG 284 (467)
Q Consensus 206 v~~~~~~~i~~Ia-~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (467)
+.-+.+..|+.+| .+.++.++|++.|++-..= .- ..|+.++...
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~------------g~p~~l~~~g--------------------- 741 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KP------------GRPVPLSRPG--------------------- 741 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCcccccc--CC------------CCCccCCCCC---------------------
Confidence 3334455677776 4788999999999886531 10 1133322111
Q ss_pred CCCCccEEEEeecCceE-EEEecCCcEEEEeeCCCCcccCC-CCCCccCceeccccCCccEEEEEeCCCeEEEEEcCC
Q 012245 285 KAGRSYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQCGHG-STNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEG 360 (467)
Q Consensus 285 ~~~~~~i~~ia~G~~~s-~~lt~~g~v~~wG~n~~gqlG~~-~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g 360 (467)
...+|++|++-..|. +|+|.+|++|..=.-.+.+.-.+ .......| |..+.+.++..+....+|.+.+.-++
T Consensus 742 --l~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~--v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 742 --LSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQK--VALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred --CCcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCcee--ccCCCCCchhhhhcCCCCceEEEecC
Confidence 116799999998866 56889999997533222221111 12233344 44446678999999988888876544
No 20
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=0.073 Score=57.59 Aligned_cols=137 Identities=16% Similarity=0.163 Sum_probs=93.8
Q ss_pred CCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCC--CCCccCceec-cccCCccEEEEEeCCCeEEEEEcC
Q 012245 283 SGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGS--TNDQLRPSYA-SSLMDIQVEQIAAGLWHTVCISVE 359 (467)
Q Consensus 283 ~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~--~~~~~~p~~v-~~~~~~~i~~v~~G~~~~~al~~~ 359 (467)
++.....+++.|.+-.+..+||..+|++|.|-+.+...|..+- ..+...|... -.+.+.+|+.+++..-..-++|.+
T Consensus 368 wpDddan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~n 447 (3015)
T KOG0943|consen 368 WPDDDANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATEN 447 (3015)
T ss_pred CcCCCCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecC
Confidence 3444558899999999999999999999999987765554422 1222334322 234567899999998888899999
Q ss_pred CcEEEEeCCCCCcccCCCCC--CCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCC
Q 012245 360 GRVYVFGGNQFGQLGTGVDQ--AENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQ 426 (467)
Q Consensus 360 g~vy~wG~n~~gqlG~~~~~--~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gq 426 (467)
|+|..|=.. +|.+... ....-++++ .++..+++.-|-..|.+|...|..+|-||--...|
T Consensus 448 ghlasWlDE----cgagV~fkLa~ea~Tkie---ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 448 GHLASWLDE----CGAGVAFKLAHEAQTKIE---EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred CchhhHHhh----hhhhhhhhhhhhhhhhhh---hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 999999531 1222111 112223333 45556777778888999999999999999654433
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=86.05 E-value=27 Score=31.95 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCC--eEEEEeCCCcEEEEeCCC
Q 012245 350 LWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGAR--HSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 350 ~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--h~~al~~~G~vy~wG~n~ 423 (467)
..+-+.-+.+|.|++|--..+ .-..+..|.. +..|.+++.... -.+|.++.|++|+|-.-.
T Consensus 136 QteLis~dqsg~irvWDl~~~------~c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGEN------SCTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cceEEeecCCCcEEEEEccCC------ccccccCCCC-------CcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 445555677899999974321 1111222322 245777776654 456689999999997643
No 22
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.91 E-value=13 Score=33.63 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.3
Q ss_pred ccEEEEeecCceEEEEecCCcEEEEeeC
Q 012245 289 SYVKEIACGGRHSAVVTDAGALLTFGWG 316 (467)
Q Consensus 289 ~~i~~ia~G~~~s~~lt~~g~v~~wG~n 316 (467)
.++..+.|-..+.++||.+|.+|+|--.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 6788999999999999999999999754
No 23
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.43 E-value=17 Score=32.98 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.6
Q ss_pred cEEEEEeCCCeEEEEEcCCcEEEEeCCC
Q 012245 342 QVEQIAAGLWHTVCISVEGRVYVFGGNQ 369 (467)
Q Consensus 342 ~i~~v~~G~~~~~al~~~g~vy~wG~n~ 369 (467)
++..+.|-.++-++||.+|.+|+|--..
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 6788999999999999999999997544
No 24
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=77.25 E-value=4.5 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCeeEEecCc-cEEEEEecCCcEEEe
Q 012245 104 ASVVKAAAGW-AHCVSVTEAGEVYTW 128 (467)
Q Consensus 104 ~~i~~is~G~-~h~~aLt~~G~v~~w 128 (467)
-.+++|++|. ....+++.+|+||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4689999999 999999999999963
No 25
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=76.35 E-value=31 Score=32.18 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=39.0
Q ss_pred eecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCc---cEEEEEecCCcEEEee
Q 012245 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW---AHCVSVTEAGEVYTWG 129 (467)
Q Consensus 55 v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~---~h~~aLt~~G~v~~wG 129 (467)
+..|+--|.++...||.||.-+... |.+|.-+... -+++.+..|. -|.+++..||..|..-
T Consensus 58 vp~G~ap~dvapapdG~VWft~qg~--gaiGhLdP~t------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 58 VPNGSAPFDVAPAPDGAVWFTAQGT--GAIGHLDPAT------------GEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cCCCCCccccccCCCCceEEecCcc--ccceecCCCC------------CceEEEecCCCCCCceEEECCCCCeeEec
Confidence 3445555899999999999877653 5554332211 2234444333 4788888888888865
No 26
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=75.01 E-value=5.8 Score=24.01 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.6
Q ss_pred cEEEEEeCC-CeeEEEecCCcEEEE
Q 012245 213 KITKVAAGG-RHTLILSDMGQVWGW 236 (467)
Q Consensus 213 ~i~~Ia~G~-~h~~alt~~G~vy~w 236 (467)
.+++|++|. +...+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 799999999 999999999999863
No 27
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=72.24 E-value=1.1e+02 Score=30.61 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=36.7
Q ss_pred ceeeecCCcceeE-EEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCc--cEEEEEecCCcEEEe
Q 012245 52 WKDVCGGGCGFAL-ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYTW 128 (467)
Q Consensus 52 i~~v~~g~~~~~~-~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~--~h~~aLt~~G~v~~w 128 (467)
+..+++..+++.+ +=+..|++|.|=-+. |.|-.-.... -..|+.+.... .|.+-=.+||.|++|
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~~aH-----------YQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSS--GILLNVLSAH-----------YQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEecc--ccHHHHHHhh-----------ccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 4445555454444 346899999998764 4432111111 12344444444 454555678999999
Q ss_pred eC
Q 012245 129 GW 130 (467)
Q Consensus 129 G~ 130 (467)
=.
T Consensus 151 ~l 152 (476)
T KOG0646|consen 151 LL 152 (476)
T ss_pred EE
Confidence 73
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=68.82 E-value=1.7e+02 Score=31.40 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=27.3
Q ss_pred ceEEEEec--CCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012245 396 RAKVVSCG--ARHSAVLTEDGQVLSWGWNKYGQLGL 429 (467)
Q Consensus 396 ~i~~i~~G--~~h~~al~~~G~vy~wG~n~~gqlG~ 429 (467)
.+..++.- ..-.++.|-||++=.|-.++..|+|.
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 45566554 66778889999999999999999964
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=64.96 E-value=1e+02 Score=27.50 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=28.8
Q ss_pred eeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCcc-EEEEEec-CCcEEEeeC
Q 012245 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA-HCVSVTE-AGEVYTWGW 130 (467)
Q Consensus 62 ~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~-h~~aLt~-~G~v~~wG~ 130 (467)
+.+....+|.|+.|-... + .....+. .....|..+..... ..++... +|.|+.|-.
T Consensus 65 ~l~~~~~~~~i~i~~~~~--~----------~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 65 YLASGSSDKTIRLWDLET--G----------ECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEEEEcCCCeEEEEEcCc--c----------cceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 444556688888886543 1 0111111 11124555554432 3444444 899999874
No 30
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.76 E-value=2.5e+02 Score=32.32 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=30.6
Q ss_pred ccceEEecC--CCCcEEEEEeCCCeeE--EEecCCcEEEEEcCCCcccCC
Q 012245 201 LSPCLVTLN--PGVKITKVAAGGRHTL--ILSDMGQVWGWGYGGEGQLGL 246 (467)
Q Consensus 201 ~~p~~v~~~--~~~~i~~Ia~G~~h~~--alt~~G~vy~wG~n~~gqlg~ 246 (467)
..|....++ ..+.|.+|+.+....+ ++++.|.|=+|-....|+-+.
T Consensus 230 lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~ 279 (1311)
T KOG1900|consen 230 LVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGP 279 (1311)
T ss_pred hhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccce
Confidence 445544444 3458999999876665 456789988887766665443
No 31
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=62.35 E-value=22 Score=20.32 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCeeEEEecCCcEE
Q 012245 212 VKITKVAAGGRHTLILSDMGQVW 234 (467)
Q Consensus 212 ~~i~~Ia~G~~h~~alt~~G~vy 234 (467)
+.|+.|++|.....+.|+.+-|-
T Consensus 2 E~i~aia~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLR 24 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEE
Confidence 47999999999999999987654
No 32
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=57.39 E-value=3.1e+02 Score=30.42 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=42.6
Q ss_pred CCCceeee-cCCcceeEEEecCCcEEEecCCCCCCCccccCCCC--cCcccccCCCCCCCeeEEecC-----ccEEEEEe
Q 012245 49 GDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKH--GETPEPFPLPTEASVVKAAAG-----WAHCVSVT 120 (467)
Q Consensus 49 ~~~i~~v~-~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~--~~~p~~v~~~~~~~i~~is~G-----~~h~~aLt 120 (467)
+..++.+. |-...+.+++|++|++|..-... +....... ......+.+..+.+|+.+.+- ....+++|
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~----IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT 609 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ----IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFAT 609 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh----CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEe
Confidence 44444432 22223667889999999983321 11111111 111122455566778777662 23578888
Q ss_pred cCCcEEEeeC
Q 012245 121 EAGEVYTWGW 130 (467)
Q Consensus 121 ~~G~v~~wG~ 130 (467)
++|.+.-.-.
T Consensus 610 ~~GyiKRi~l 619 (800)
T TIGR01063 610 KNGVVKKTSL 619 (800)
T ss_pred CCCEEEEEEh
Confidence 8888776543
No 33
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=56.27 E-value=62 Score=29.44 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=31.9
Q ss_pred CceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCcc-EEEEEecCCcEEEe
Q 012245 51 SWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA-HCVSVTEAGEVYTW 128 (467)
Q Consensus 51 ~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~-h~~aLt~~G~v~~w 128 (467)
.++.|.+.+.+..++|+++|+||-+=.-....+ .......+.+-...-..++.|.++.. -.++++.||++|-+
T Consensus 82 ~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~-----~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 82 SFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSD-----NWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDGRLYRR 155 (229)
T ss_dssp G-SEEEE-TTS-EEEEETT-EEEEES---STT-------HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE-EEEE
T ss_pred ceeEEEecCCccEEEeccccceeeccCCCccCc-----chhhccceecccCCCccceEEEeCCCccEEEEcCCCceEEe
Confidence 455666666667777777777776533221000 00001122221111123666666554 47788888877765
No 34
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=50.56 E-value=2.5e+02 Score=27.44 Aligned_cols=56 Identities=21% Similarity=0.124 Sum_probs=29.8
Q ss_pred CeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEE
Q 012245 351 WHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSW 419 (467)
Q Consensus 351 ~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~w 419 (467)
.+.++.+.+|.||++-... |++ . -..+. ....-..+-+.-..+.++.+.+|+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~-----~-----~~~~~--~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSF-----V-----ARLKT--DGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCE-----E-----EEEEc--CCCccccCCEEECCEEEEEeCCceEEEe
Confidence 4666678889999986433 111 0 01110 0000111222334567888999999986
No 35
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=49.55 E-value=3.1e+02 Score=28.11 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=13.0
Q ss_pred EeecCceEEEEecCCcEEE
Q 012245 294 IACGGRHSAVVTDAGALLT 312 (467)
Q Consensus 294 ia~G~~~s~~lt~~g~v~~ 312 (467)
..-|.-+++++..+|.+.+
T Consensus 285 aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred ecCCceEEEEEecCccEee
Confidence 5556667777777776666
No 36
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.94 E-value=4.4e+02 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=22.7
Q ss_pred CcEEEEEeCCCe--eEEEecCCcEEEEEc
Q 012245 212 VKITKVAAGGRH--TLILSDMGQVWGWGY 238 (467)
Q Consensus 212 ~~i~~Ia~G~~h--~~alt~~G~vy~wG~ 238 (467)
..|.+|+....+ .++|+.+|+|..|-.
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 479999998888 799999998777654
No 37
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=48.07 E-value=22 Score=22.11 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=16.1
Q ss_pred CeEEEEeCCCcEEEEeCCC
Q 012245 405 RHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 405 ~h~~al~~~G~vy~wG~n~ 423 (467)
-+.++++.+|.+|+-|.-.
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999744
No 38
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=47.74 E-value=2.3e+02 Score=26.13 Aligned_cols=77 Identities=8% Similarity=0.044 Sum_probs=38.5
Q ss_pred ccEEEEeecCceEEEEecCCcEEEEeeCCCCc-ccCCCCCCccCceeccccCCccEEEEEe--CCCeEEEEEcCCcEEEE
Q 012245 289 SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ-CGHGSTNDQLRPSYASSLMDIQVEQIAA--GLWHTVCISVEGRVYVF 365 (467)
Q Consensus 289 ~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gq-lG~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~~~al~~~g~vy~w 365 (467)
.+|-.++.-++|-+.- -+|+||+|-+++.-. ++....-....|..+...+--.|..+.. -.+..+.---|+.+|+|
T Consensus 63 gpiy~~~f~d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred CCeeeeeeehhheeec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 4455666555554443 459999999987655 3332222333455443222112322222 22333333346667777
Q ss_pred e
Q 012245 366 G 366 (467)
Q Consensus 366 G 366 (467)
-
T Consensus 142 d 142 (325)
T KOG0649|consen 142 D 142 (325)
T ss_pred E
Confidence 5
No 39
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=45.39 E-value=43 Score=31.95 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=37.5
Q ss_pred eeeeEEEEeecCCCCCCCCCCCccceecccCCCCCceeeecCCcc-eeEEEecCCcEEEecC
Q 012245 17 CKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGS 77 (467)
Q Consensus 17 ~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~-~~~~l~~~G~vy~wG~ 77 (467)
...|+||+|--- ...+...++......+..|++.+..-++ +-+++.++|.||.|-.
T Consensus 326 nq~g~v~vwdL~-----~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLD-----NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECC-----CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 345778888542 2223355666666667888887655444 5567799999999954
No 40
>PRK05560 DNA gyrase subunit A; Validated
Probab=45.03 E-value=4.7e+02 Score=28.99 Aligned_cols=77 Identities=12% Similarity=0.008 Sum_probs=43.0
Q ss_pred CCCceeeecC-CcceeEEEecCCcEEEecCCCCCCCccccCCCCc--CcccccCCCCCCCeeEEecCc-----cEEEEEe
Q 012245 49 GDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTSGKHG--ETPEPFPLPTEASVVKAAAGW-----AHCVSVT 120 (467)
Q Consensus 49 ~~~i~~v~~g-~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~--~~p~~v~~~~~~~i~~is~G~-----~h~~aLt 120 (467)
+..++.+... .....+++|+.|++|..--.. +........ .....+.+..+.+|+.+.+-. ...+++|
T Consensus 536 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~----iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvT 611 (805)
T PRK05560 536 DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYE----IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFAT 611 (805)
T ss_pred CCeeEEEEEecCCCeEEEEecCCeEEEEEhhh----CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEe
Confidence 4445444222 222667889999999975432 111111111 111224455667788877644 3578888
Q ss_pred cCCcEEEee
Q 012245 121 EAGEVYTWG 129 (467)
Q Consensus 121 ~~G~v~~wG 129 (467)
++|.+.---
T Consensus 612 k~GyiKRi~ 620 (805)
T PRK05560 612 KNGTVKKTS 620 (805)
T ss_pred CCCEEEEEE
Confidence 888776544
No 41
>PHA03098 kelch-like protein; Provisional
Probab=45.02 E-value=3e+02 Score=28.61 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=11.0
Q ss_pred ceEEEEecCCcEEEEee
Q 012245 299 RHSAVVTDAGALLTFGW 315 (467)
Q Consensus 299 ~~s~~lt~~g~v~~wG~ 315 (467)
.|+++. -++++|.+|-
T Consensus 382 ~~~~~~-~~~~iYv~GG 397 (534)
T PHA03098 382 NPCVVN-VNNLIYVIGG 397 (534)
T ss_pred cceEEE-ECCEEEEECC
Confidence 455443 4689999985
No 42
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=44.76 E-value=1.6e+02 Score=32.30 Aligned_cols=102 Identities=13% Similarity=0.200 Sum_probs=52.3
Q ss_pred hceeeeeEEEEeecCCCCCCCCCCC--ccceeccc--CCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCC
Q 012245 14 MEECKETVVYMWGYLPGTSPEKSPI--LSPIPARL--CGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (467)
Q Consensus 14 ~~~~~~~~v~~WG~~~~~~~~~~~~--~~p~~~~~--~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~ 89 (467)
|=++.+.+++.|-.|+++--+.-+. ++-..|.+ |....++ .. -.|-+++...-++|..|-..+
T Consensus 96 cWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFv--s~--i~hlL~vAT~~e~~ilgvs~d--------- 162 (1263)
T COG5308 96 CWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFV--SR--ISHLLFVATEKEVMILGVSKD--------- 162 (1263)
T ss_pred eEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccH--Hh--hhhhhhhhhhheeeEEEEEec---------
Confidence 5578899999999985543332211 11122222 2111222 21 137788877888998886542
Q ss_pred CCcCcccccCCCCCCCeeEEecCccEEEEE-ecCCcEEEeeCCC
Q 012245 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSV-TEAGEVYTWGWRE 132 (467)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~is~G~~h~~aL-t~~G~v~~wG~n~ 132 (467)
.....+.+.+ ..++-=+-|-+-.+++ .++|++|.-|.++
T Consensus 163 ---~~T~Els~fn-Tgl~vsvqGinV~civs~e~GrIFf~g~~d 202 (1263)
T COG5308 163 ---TKTGELSLFN-TGLVVSVQGINVRCIVSEEDGRIFFGGEND 202 (1263)
T ss_pred ---cccceeEEEe-cceEEeccCceeEEEEeccCCcEEEecCCC
Confidence 1111112222 1222222344444444 4569999998766
No 43
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=44.24 E-value=74 Score=29.81 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=61.6
Q ss_pred hceeeeeEEEEeecCCCCCCCCCCCccc-eecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCc
Q 012245 14 MEECKETVVYMWGYLPGTSPEKSPILSP-IPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHG 92 (467)
Q Consensus 14 ~~~~~~~~v~~WG~~~~~~~~~~~~~~p-~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~ 92 (467)
.+...+|.||.=++.++..|.-++..-- ..+. +=+|..-|.+.+..||..|..-... +.+.+....
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~yp---------Lg~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dpkt-- 133 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP---------LGSGASPHGIVVGPDGSAWITDTGL--AIGRLDPKT-- 133 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEe---------cCCCCCCceEEECCCCCeeEecCcc--eeEEecCcc--
Confidence 4667888999888877666665543211 1222 2355555889999999999875431 221111111
Q ss_pred CcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCC
Q 012245 93 ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (467)
Q Consensus 93 ~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~ 132 (467)
..-+.++++ .+.+-+...+.+++.+|+||.-|.+-
T Consensus 134 ~evt~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~G 168 (353)
T COG4257 134 LEVTRFPLP-----LEHADANLETAVFDPWGNLWFTGQIG 168 (353)
T ss_pred cceEEeecc-----cccCCCcccceeeCCCccEEEeeccc
Confidence 112233333 34455677889999999999998643
No 44
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=44.20 E-value=1.9e+02 Score=28.28 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=12.2
Q ss_pred CeeEEEecCCcEEEE
Q 012245 222 RHTLILSDMGQVWGW 236 (467)
Q Consensus 222 ~h~~alt~~G~vy~w 236 (467)
++.++.+.+|+||++
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 567788889999986
No 45
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=44.04 E-value=2e+02 Score=26.46 Aligned_cols=48 Identities=19% Similarity=0.030 Sum_probs=28.7
Q ss_pred CCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCc-ccCCCCCCCccceee
Q 012245 339 MDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQ-LGTGVDQAENVPKLL 387 (467)
Q Consensus 339 ~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gq-lG~~~~~~~~~p~~v 387 (467)
.+.+|-.++.-+.|- ..-.||.||.|-.|..-. ++....-....|..+
T Consensus 61 hdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred cCCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 344677776654443 334579999999888665 555443334444443
No 46
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=43.13 E-value=3.4e+02 Score=26.79 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=36.6
Q ss_pred cEEEEeecC-ceEEEEecCCcEEEEeeCCCCcccCCCCCCccCcee-ccc------cCCccEEEEEeCCC---eEEEEEc
Q 012245 290 YVKEIACGG-RHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSY-ASS------LMDIQVEQIAAGLW---HTVCISV 358 (467)
Q Consensus 290 ~i~~ia~G~-~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~-v~~------~~~~~i~~v~~G~~---~~~al~~ 358 (467)
.+..|..|. -+.++++.||+...-++...+++-.-+... ..|.+ ++. ....++..|.+-.. +.+.+.+
T Consensus 70 ~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 70 VVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 356666665 577888999987766665555554433222 11111 110 01235555554322 4455667
Q ss_pred CCcEEEEe
Q 012245 359 EGRVYVFG 366 (467)
Q Consensus 359 ~g~vy~wG 366 (467)
.+++|.--
T Consensus 149 ~~~I~vVd 156 (369)
T PF02239_consen 149 TGEIWVVD 156 (369)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 78887764
No 47
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=39.64 E-value=5.7e+02 Score=28.37 Aligned_cols=120 Identities=9% Similarity=-0.034 Sum_probs=61.0
Q ss_pred ccEEEEeec-----CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeC--CCeEEEEEcCCc
Q 012245 289 SYVKEIACG-----GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAG--LWHTVCISVEGR 361 (467)
Q Consensus 289 ~~i~~ia~G-----~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~al~~~g~ 361 (467)
.+|+.+.+- ....+++|++|.+.-.-.+.+-.. ....-..+..-.+..++.+... ..+.+++|++|+
T Consensus 588 E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~------~r~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr 661 (800)
T TIGR01063 588 ERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNI------RSNGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGK 661 (800)
T ss_pred CeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhh------ccCCcccccCCCCCEEEEEEEeCCCCEEEEEECCCc
Confidence 456665552 235788899997776543322110 0000001111122345444333 356788999999
Q ss_pred EEEEeCCCCCcccCCCCCCCcccee-eecCccCCCceEEEEec--CCeEEEEeCCCcEEEEeC
Q 012245 362 VYVFGGNQFGQLGTGVDQAENVPKL-LETPILESKRAKVVSCG--ARHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 362 vy~wG~n~~gqlG~~~~~~~~~p~~-v~~~~~~~~~i~~i~~G--~~h~~al~~~G~vy~wG~ 421 (467)
+|.+=.+.--..|.... ... +. ..++.+|+.+..- ..+.+++|+.|.+.-.=.
T Consensus 662 ~~r~~v~eIp~~gr~~~-----Gv~~i~--L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l 717 (800)
T TIGR01063 662 AVRFPEEDVRPMGRAAR-----GVRGIK--LKNEDFVVSLLVVSEESYLLIVTENGYGKRTSI 717 (800)
T ss_pred EEEEEhhhcCCcCCCCC-----Ceeccc--CCCCCEEEEEEEeccccEEEEEecCCcEEEEEH
Confidence 99886554333332111 111 22 1345567766542 345677888887666543
No 48
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=38.69 E-value=5.6e+02 Score=28.03 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=22.6
Q ss_pred EecCCCCcEEEEEeCCC--eeEEEecCCcEEEEEc
Q 012245 206 VTLNPGVKITKVAAGGR--HTLILSDMGQVWGWGY 238 (467)
Q Consensus 206 v~~~~~~~i~~Ia~G~~--h~~alt~~G~vy~wG~ 238 (467)
+.+.++.+|+.+.+... +.+++|+.|.++-.-.
T Consensus 570 L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~l 604 (735)
T TIGR01062 570 LLLPIGATITNILMYSPNQLLLMASDAGYGFLCNF 604 (735)
T ss_pred ecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEh
Confidence 34456678888777543 4778889997776644
No 49
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=36.94 E-value=90 Score=29.92 Aligned_cols=36 Identities=19% Similarity=0.505 Sum_probs=24.7
Q ss_pred ceEEecCCCCcEEEEEeCCCee--EEEecCCcEEEEEc
Q 012245 203 PCLVTLNPGVKITKVAAGGRHT--LILSDMGQVWGWGY 238 (467)
Q Consensus 203 p~~v~~~~~~~i~~Ia~G~~h~--~alt~~G~vy~wG~ 238 (467)
|++........|.|.+...+-+ +++.+++.||.|-.
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 4445555566788887766554 44578999999954
No 50
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=36.24 E-value=6.3e+02 Score=27.93 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=37.8
Q ss_pred eeEEEecCCc-EEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEE
Q 012245 62 FALATSESGK-LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYT 127 (467)
Q Consensus 62 ~~~~l~~~G~-vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~ 127 (467)
-.++++.+|+ |+++|++.+ ..-.........|.-+.. ....|..|++-.+|.+.-++++.|-.
T Consensus 17 t~i~~d~~gefi~tcgsdg~--ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGD--IRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred EEEEEcCCCCEEEEecCCCc--eEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEE
Confidence 3455666666 556665431 111111122255655554 34679999999999999999987644
No 51
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=34.94 E-value=2.5e+02 Score=22.86 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=38.2
Q ss_pred cEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEE
Q 012245 342 QVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSW 419 (467)
Q Consensus 342 ~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~w 419 (467)
+.+++.|-..+.+.|..||.|- |..+ . ......++........|.--.+-....+++++.|+||+-
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~--Gt~~--------~--~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s 68 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVD--GTRD--------E--SSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGS 68 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEe--cccC--------C--CCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEc
Confidence 4677777665668888888754 3221 1 111222222112222344344566788999999999983
No 52
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.22 E-value=7.1e+02 Score=28.92 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=34.1
Q ss_pred CccceeeecCccCCCceEEEEecCCeEE--EEeCCCcEEEEeCCCCCCCCC
Q 012245 381 ENVPKLLETPILESKRAKVVSCGARHSA--VLTEDGQVLSWGWNKYGQLGL 429 (467)
Q Consensus 381 ~~~p~~v~~~~~~~~~i~~i~~G~~h~~--al~~~G~vy~wG~n~~gqlG~ 429 (467)
...|..+..|......|.+|+......+ ++++.|.|-+|=....|+-+.
T Consensus 229 ~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~ 279 (1311)
T KOG1900|consen 229 SLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGP 279 (1311)
T ss_pred HhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccce
Confidence 3467766665444568999999877665 478889888887766655543
No 53
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=34.04 E-value=1.7e+02 Score=28.95 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=45.7
Q ss_pred EEEEeecCce---EEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEe
Q 012245 291 VKEIACGGRH---SAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFG 366 (467)
Q Consensus 291 i~~ia~G~~~---s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG 366 (467)
++.+.++.++ .+++..+|++..|-.+.+- .++ .....+.+|+--....+|++..|.||++.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt--------------~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNVLK--------------ALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCeee--------------Ecc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 5557888876 7888899999999754332 222 24456888888888888998889999887
No 54
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=32.22 E-value=1.4e+02 Score=27.02 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=41.6
Q ss_pred EEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEE
Q 012245 225 LILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVV 304 (467)
Q Consensus 225 ~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~l 304 (467)
++.--.|.+|+-|+|+. ..+.-..|..+..-........+|.++.. -.+-.-|.-+..+.
T Consensus 38 v~fhp~g~lyavgsnsk-------t~ric~yp~l~~~r~~hea~~~pp~v~~k-------------r~khhkgsiyc~~w 97 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSK-------TFRICAYPALIDLRHAHEAAKQPPSVLCK-------------RNKHHKGSIYCTAW 97 (350)
T ss_pred EEecCCCceEEeccCCc-------eEEEEccccccCcccccccccCCCeEEee-------------eccccCccEEEEEe
Confidence 34567899999999865 12333444444332222222333333322 22333455566777
Q ss_pred ecCCcEEEEeeCCC
Q 012245 305 TDAGALLTFGWGLY 318 (467)
Q Consensus 305 t~~g~v~~wG~n~~ 318 (467)
...|++.+-|+|+.
T Consensus 98 s~~geliatgsndk 111 (350)
T KOG0641|consen 98 SPCGELIATGSNDK 111 (350)
T ss_pred cCccCeEEecCCCc
Confidence 88888888888863
No 55
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=30.95 E-value=98 Score=23.00 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=26.6
Q ss_pred cEEEEEeC-CCeeEEEecCCcEEEEEcCCCcccCC
Q 012245 213 KITKVAAG-GRHTLILSDMGQVWGWGYGGEGQLGL 246 (467)
Q Consensus 213 ~i~~Ia~G-~~h~~alt~~G~vy~wG~n~~gqlg~ 246 (467)
.=..|+|. ..-.++|++||.+|+-+--..|++-+
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ati 51 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNATI 51 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceEEE
Confidence 56789999 89999999999999998755766543
No 56
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=30.35 E-value=7.9e+02 Score=27.25 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.5
Q ss_pred ccEEEEeecCceEEEEecCCcEEE
Q 012245 289 SYVKEIACGGRHSAVVTDAGALLT 312 (467)
Q Consensus 289 ~~i~~ia~G~~~s~~lt~~g~v~~ 312 (467)
..|..|+|-.+|.+.-++++.|-.
T Consensus 57 ~~v~~ia~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 57 ELVSSIACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred ceeEEEeecccceEEeeccceEEE
Confidence 568899999999999888886644
No 57
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=30.33 E-value=6.2e+02 Score=26.04 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=49.3
Q ss_pred EEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCe-EEEEEcCCcEEEEeCCC
Q 012245 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWH-TVCISVEGRVYVFGGNQ 369 (467)
Q Consensus 291 i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~-~~al~~~g~vy~wG~n~ 369 (467)
-.=|.||..|..+.+-.|..+.=-..-+ +..+.+-|..+..+.+- .+-=+++|.++.|+...
T Consensus 214 nliit~Gk~H~~Fw~~~~~~l~k~~~~f-----------------ek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 214 NLIITCGKGHLYFWTLRGGSLVKRQGIF-----------------EKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT 276 (626)
T ss_pred cEEEEeCCceEEEEEccCCceEEEeecc-----------------ccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC
Confidence 4558999999998887776654211111 11111234444444332 33346789999999632
Q ss_pred CCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEE
Q 012245 370 FGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLS 418 (467)
Q Consensus 370 ~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~ 418 (467)
+ ++. +-+..--|.-+++++..+|.|.+
T Consensus 277 ~---------------~~~-------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 277 N---------------RIS-------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred c---------------eEE-------eEeeecCCceEEEEEecCccEee
Confidence 1 000 11224556677777777777666
No 58
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=30.10 E-value=52 Score=21.27 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=11.4
Q ss_pred CeEEEEeCCCcEEEEeC
Q 012245 405 RHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 405 ~h~~al~~~G~vy~wG~ 421 (467)
.|+++...+++||++|=
T Consensus 4 ~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp S-EEEEE-TTEEEEE--
T ss_pred eEEEEEEeCCeEEEECC
Confidence 58888887889999984
No 59
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=28.72 E-value=4.8e+02 Score=24.24 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=17.8
Q ss_pred EEEEeecCc--eEEEEecCCcEEEEee
Q 012245 291 VKEIACGGR--HSAVVTDAGALLTFGW 315 (467)
Q Consensus 291 i~~ia~G~~--~s~~lt~~g~v~~wG~ 315 (467)
|.+++...+ ..+++++.|..|+|-.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 555655544 4566788999999974
No 60
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=28.51 E-value=3.1e+02 Score=21.95 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=39.1
Q ss_pred EEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEE-EeCCCeEEEEEcCCcEEEEe
Q 012245 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQI-AAGLWHTVCISVEGRVYVFG 366 (467)
Q Consensus 291 i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v-~~G~~~~~al~~~g~vy~wG 366 (467)
.+++-|-..+.+.+..+|.|-+-++.. +.........+.. + .+.| .+-....++++..|.||+-.
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~-------~~~s~~~i~~~~~--g--~V~i~~~~s~~YLcmn~~G~ly~~~ 67 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN-------SPYSVFEIHSVGF--G--VVRIRGVKSCRYLCMNKCGRLYGSK 67 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT-------STTGEEEEEEEET--T--EEEEEETTTTEEEEEBTTSBEEEES
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC-------cceeEEEEEeccc--e--EEEEEEecceEEEEECCCCeEcccc
Confidence 567888888899999999997655320 1111222222221 2 2333 23346678999999999853
No 61
>PHA02713 hypothetical protein; Provisional
Probab=28.12 E-value=4.8e+02 Score=27.41 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=10.2
Q ss_pred EEEeCCCcEEEEeC
Q 012245 408 AVLTEDGQVLSWGW 421 (467)
Q Consensus 408 ~al~~~G~vy~wG~ 421 (467)
.+..-+|+||+.|-
T Consensus 458 ~~~~~~~~IYv~GG 471 (557)
T PHA02713 458 GVVSHKDDIYVVCD 471 (557)
T ss_pred cEEEECCEEEEEeC
Confidence 34455789999985
No 62
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.49 E-value=83 Score=23.36 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=27.7
Q ss_pred CCceEEEEec-CCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012245 394 SKRAKVVSCG-ARHSAVLTEDGQVLSWGWNKYGQLGL 429 (467)
Q Consensus 394 ~~~i~~i~~G-~~h~~al~~~G~vy~wG~n~~gqlG~ 429 (467)
+..-..|+|. ....++|++||.+|.-+--+.|.+=+
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ati 51 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNATI 51 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceEEE
Confidence 4456889999 88899999999999999866777644
No 63
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=26.45 E-value=1.3e+02 Score=17.01 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=13.2
Q ss_pred eEEEEeCCCcEEEEeCC
Q 012245 406 HSAVLTEDGQVLSWGWN 422 (467)
Q Consensus 406 h~~al~~~G~vy~wG~n 422 (467)
|.++++.+|+||+-=++
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 67888899999986543
No 64
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.63 E-value=9.1e+02 Score=26.45 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=49.7
Q ss_pred ecccCCCCCceeeecCCc-ceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCcc--EEEEE
Q 012245 43 PARLCGGDSWKDVCGGGC-GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSV 119 (467)
Q Consensus 43 ~~~~~~~~~i~~v~~g~~-~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~--h~~aL 119 (467)
-+.+..+..++.+..+.. ...+++|++|++|.+-.+. . ..+..........+.+..+..|+.+.+... +.+++
T Consensus 518 aikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~e-I---P~GR~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLla 593 (735)
T TIGR01062 518 TLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDN-L---PSARGQGEPLTGKLLLPIGATITNILMYSPNQLLLMA 593 (735)
T ss_pred ccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHh-c---CcCccCCceeEeeecCCCCCEEEEEEEecCCcEEEEE
Confidence 344445566666544432 2578889999999996653 2 111111111122244566677888777543 57888
Q ss_pred ecCCcEEEeeCC
Q 012245 120 TEAGEVYTWGWR 131 (467)
Q Consensus 120 t~~G~v~~wG~n 131 (467)
|+.|..+-.-..
T Consensus 594 T~~GyGKrt~ls 605 (735)
T TIGR01062 594 SDAGYGFLCNFN 605 (735)
T ss_pred EcCCcEEEEEhH
Confidence 888877765533
No 65
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=24.43 E-value=1.2e+03 Score=27.23 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=21.7
Q ss_pred cEEEEEeCCCe-eEEEe--cCCcEEEEEcC
Q 012245 213 KITKVAAGGRH-TLILS--DMGQVWGWGYG 239 (467)
Q Consensus 213 ~i~~Ia~G~~h-~~alt--~~G~vy~wG~n 239 (467)
.+.+++....| +++++ +||.|-.|-.-
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~ 1079 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLR 1079 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeeh
Confidence 57789999989 77764 78999999763
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=23.54 E-value=2.7e+02 Score=27.89 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=42.0
Q ss_pred eeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCcc--EEEEEecCCcEEEeeC
Q 012245 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWGW 130 (467)
Q Consensus 62 ~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~--h~~aLt~~G~v~~wG~ 130 (467)
+++++-.||-+|.-|.-+ |++-.-+.+....-..++. ....|+.|+.+.+ ..+.-.+|+.|.+|-.
T Consensus 351 ts~~fHpDgLifgtgt~d--~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPD--GVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred EEeeEcCCceEEeccCCC--ceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 556677788888888764 6665544444333333333 2356888887664 4444566788999984
No 67
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=23.39 E-value=3.9e+02 Score=21.35 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=40.8
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEE
Q 012245 343 VEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSW 419 (467)
Q Consensus 343 i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~w 419 (467)
.+++.|-..+.+.|..||.|-+-+... +........+ .....|.--++-....+++++.|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~---------~~~s~~~i~~---~~~g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN---------SPYSVFEIHS---VGFGVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT---------STTGEEEEEE---EETTEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC---------cceeEEEEEe---ccceEEEEEEecceEEEEECCCCeEccc
Confidence 577888888889999999988766431 1111222222 1122333334445788999999999984
No 68
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=23.35 E-value=7.9e+02 Score=24.89 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=17.0
Q ss_pred eeEEecCc--cEEEEEecCCcEEEeeCCC
Q 012245 106 VVKAAAGW--AHCVSVTEAGEVYTWGWRE 132 (467)
Q Consensus 106 i~~is~G~--~h~~aLt~~G~v~~wG~n~ 132 (467)
+..+++.. ++.++=|..|+||+|-.+.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelss 112 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSS 112 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEecc
Confidence 45555543 3444445889999998543
No 69
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=23.34 E-value=4e+02 Score=21.52 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=35.4
Q ss_pred EEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEE-EecCCeEEEEeCCCcEEEE
Q 012245 345 QIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVV-SCGARHSAVLTEDGQVLSW 419 (467)
Q Consensus 345 ~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i-~~G~~h~~al~~~G~vy~w 419 (467)
++.|-..+.+.|..||.|-.-.... +......... ... .++.| .+-....+++++.|+||+-
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~~~---------~~~s~l~~~s---~~~-g~v~i~~v~s~~YLCmn~~G~ly~s 64 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRDDS---------SSYTILERIA---VAV-GVVSIKGVASCRYLCMNKCGKLYGS 64 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccCCC---------CCCceEEEEE---CCC-CEEEEEEcccceEEEECCCCCEEEC
Confidence 4555557778888899865433211 0111222222 222 34334 3457788999999999984
No 70
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=23.31 E-value=78 Score=18.83 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=9.5
Q ss_pred EEEEeCCCCCcc
Q 012245 362 VYVFGGNQFGQL 373 (467)
Q Consensus 362 vy~wG~n~~gql 373 (467)
+.+||+|..|.+
T Consensus 20 lVVWGRnG~g~~ 31 (33)
T PRK02529 20 MVVWGRNGDGSI 31 (33)
T ss_pred EEEEecCCcccc
Confidence 679999987654
No 71
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=23.18 E-value=8.8e+02 Score=25.62 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=32.3
Q ss_pred EEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCc---eEEEEecCCeEEEEeCCCcEEEEeC
Q 012245 355 CISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKR---AKVVSCGARHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 355 al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~---i~~i~~G~~h~~al~~~G~vy~wG~ 421 (467)
+..-++.+|+.|-.+. +.. ... ++.-+....+ +..+.....+..+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~------~~~---VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSA------LSS---VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCc------cce---EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4455789999995442 110 101 2211122222 3334567777777788999999876
No 72
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=22.59 E-value=3.5e+02 Score=26.80 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=43.3
Q ss_pred EEEEEeCCCe---eEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCcc
Q 012245 214 ITKVAAGGRH---TLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSY 290 (467)
Q Consensus 214 i~~Ia~G~~h---~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (467)
+..+.++.+| .+++..+|++.-|..+..- .+.. .. ..
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt---------------~l~~-~~------------------------~~ 201 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNVLK---------------ALKQ-MG------------------------YH 201 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCeee---------------EccC-CC------------------------ce
Confidence 4446778876 7777889999889643221 1211 11 45
Q ss_pred EEEEeecCceEEEEecCCcEEEEe
Q 012245 291 VKEIACGGRHSAVVTDAGALLTFG 314 (467)
Q Consensus 291 i~~ia~G~~~s~~lt~~g~v~~wG 314 (467)
+.+|+-=....+|++..|+||.+.
T Consensus 202 ~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 202 FSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred eeEEEEECCEEEEEcCCCeEEEEe
Confidence 888888888899999999999876
No 73
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=22.51 E-value=6.2e+02 Score=23.37 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=38.4
Q ss_pred EEeC-CCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCcccee------eecCccCCCceEEEEecCCeEEEEeCCCcEEE
Q 012245 346 IAAG-LWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKL------LETPILESKRAKVVSCGARHSAVLTEDGQVLS 418 (467)
Q Consensus 346 v~~G-~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~------v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~ 418 (467)
++.+ ++-+..+..||+|++.|-.. ...-+..|.. ...+.+.... .......+=.+.|..+|+||.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~-------~~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi 185 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSN-------NPTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFI 185 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcC-------CCcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEE
Confidence 4444 46677888999999998433 1111222321 1111111100 022234444677888999999
Q ss_pred EeCCC
Q 012245 419 WGWNK 423 (467)
Q Consensus 419 wG~n~ 423 (467)
|+.+.
T Consensus 186 ~an~~ 190 (243)
T PF07250_consen 186 FANRG 190 (243)
T ss_pred EEcCC
Confidence 99865
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.53 E-value=6e+02 Score=22.89 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=32.6
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEeecCCCceEEEEec--CCeEEEEEc
Q 012245 405 RHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACG--WWHTLLLAE 463 (467)
Q Consensus 405 ~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~v~~v~~G--~~hs~~l~~ 463 (467)
--.++++.+|+||+--... +.+-.=+.. -..-..+.++...+..++.| ...+|+++.
T Consensus 186 pDG~~vD~~G~l~va~~~~-~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGG-GRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBTTS-EEEEEETT-TEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCC-CEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 4578999999999853311 111110111 12345566775589999986 557888775
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=21.48 E-value=3.9e+02 Score=26.83 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=40.6
Q ss_pred hceeeeeEEEEeecCCCCCCCCCCCccceecc-cCC-CCCceeeecCCcceeEEE-ecCCcEEEecCC
Q 012245 14 MEECKETVVYMWGYLPGTSPEKSPILSPIPAR-LCG-GDSWKDVCGGGCGFALAT-SESGKLITWGSA 78 (467)
Q Consensus 14 ~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~-~~~-~~~i~~v~~g~~~~~~~l-~~~G~vy~wG~~ 78 (467)
.+.+++|-+|.=|..++.+.-.+-. .+..+. .+. ...|+.|+.+..+|-++. .+|+.|.+|---
T Consensus 353 ~~fHpDgLifgtgt~d~~vkiwdlk-s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 353 AAFHPDGLIFGTGTPDGVVKIWDLK-SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eeEcCCceEEeccCCCceEEEEEcC-CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 5677888888887765444332222 222222 222 567888988877777777 567779999653
No 76
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=21.34 E-value=91 Score=24.77 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.0
Q ss_pred ecCCeEEEEeCCCcEEEEeCCC
Q 012245 402 CGARHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 402 ~G~~h~~al~~~G~vy~wG~n~ 423 (467)
.-..|.+|.|.-|+||.|+.+.
T Consensus 77 ~~~~~~ia~tAFGdl~~w~e~~ 98 (109)
T PF08887_consen 77 PDNYIPIARTAFGDLYVWGENT 98 (109)
T ss_pred CceEEEEEEcccccEEEEEcCC
Confidence 3467999999999999999876
No 77
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=20.77 E-value=9e+02 Score=24.63 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCC
Q 012245 409 VLTEDGQVLSWGWNKYGQLGLGDSI 433 (467)
Q Consensus 409 al~~~G~vy~wG~n~~gqlG~g~~~ 433 (467)
-=+.+|+||.|+++..-.+.....-
T Consensus 449 SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 449 SGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred eecCCccEEEeechhhhhhhccccC
Confidence 3477899999999987777665544
No 78
>PHA02713 hypothetical protein; Provisional
Probab=20.72 E-value=4e+02 Score=28.05 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=10.9
Q ss_pred EEEEcCCcEEEEeCC
Q 012245 354 VCISVEGRVYVFGGN 368 (467)
Q Consensus 354 ~al~~~g~vy~wG~n 368 (467)
.+..-+|+||++|-.
T Consensus 346 ~~~~~~g~IYviGG~ 360 (557)
T PHA02713 346 SLAVIDDTIYAIGGQ 360 (557)
T ss_pred eEEEECCEEEEECCc
Confidence 344557899999953
No 79
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=20.13 E-value=94 Score=22.84 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.0
Q ss_pred eeeEE-EEeecCCCC
Q 012245 18 KETVV-YMWGYLPGT 31 (467)
Q Consensus 18 ~~~~v-~~WG~~~~~ 31 (467)
.-.++ |.||+|-++
T Consensus 54 AYPsv~waWGSNKnk 68 (84)
T PF07312_consen 54 AYPSVYWAWGSNKNK 68 (84)
T ss_pred cCcceeeeeccCCCC
Confidence 34556 999999544
Done!