Query 012245
Match_columns 467
No_of_seqs 234 out of 2341
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 2E-73 6.8E-78 566.8 33.3 373 8-465 8-388 (389)
2 1a12_A RCC1, regulator of chro 100.0 5.3E-70 1.8E-74 546.8 41.3 375 7-467 14-412 (413)
3 3mvd_K Regulator of chromosome 100.0 1.4E-68 4.6E-73 538.6 43.7 366 9-466 32-420 (423)
4 4d9s_A UVB-resistance protein 100.0 1.3E-68 4.5E-73 534.8 37.7 349 9-442 24-376 (406)
5 3of7_A Regulator of chromosome 100.0 3E-68 1E-72 542.3 40.2 368 12-464 21-450 (473)
6 4d9s_A UVB-resistance protein 100.0 1.6E-67 5.5E-72 527.0 38.7 334 49-467 15-350 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 2.7E-64 9.3E-69 501.0 28.9 323 61-467 11-338 (389)
8 1a12_A RCC1, regulator of chro 100.0 1.9E-62 6.4E-67 492.1 33.3 320 60-467 17-358 (413)
9 3mvd_K Regulator of chromosome 100.0 3.1E-61 1.1E-65 484.9 34.7 330 48-467 22-367 (423)
10 3of7_A Regulator of chromosome 100.0 1.3E-60 4.6E-65 486.0 32.6 354 50-467 10-398 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 5.9E-56 2E-60 420.1 32.7 272 20-466 2-274 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.1E-49 7.2E-54 375.2 27.8 237 71-467 3-239 (282)
13 1p22_A F-BOX/WD-repeat protein 97.0 0.33 1.1E-05 47.4 27.5 271 11-423 144-414 (435)
14 4gbf_A Phikz131; 7-bladed beta 96.3 0.0065 2.2E-07 53.6 6.6 70 213-320 310-379 (400)
15 2ovr_B FBW7, F-BOX/WD repeat p 96.0 1.3 4.4E-05 43.1 34.8 262 11-423 130-391 (445)
16 4gbf_A Phikz131; 7-bladed beta 96.0 0.019 6.5E-07 50.7 7.5 70 289-371 309-378 (400)
17 1p22_A F-BOX/WD-repeat protein 95.9 1.4 4.9E-05 42.7 30.3 149 213-421 215-363 (435)
18 2ovr_B FBW7, F-BOX/WD repeat p 94.6 3.5 0.00012 39.9 33.9 148 213-423 201-348 (445)
19 3odt_A Protein DOA1; ubiquitin 94.3 2.9 0.0001 37.7 28.6 97 301-423 198-296 (313)
20 1k3i_A Galactose oxidase precu 92.9 9.7 0.00033 39.3 22.8 71 351-425 458-533 (656)
21 2zwa_A Leucine carboxyl methyl 92.8 8.1 0.00028 40.3 20.0 17 405-421 657-673 (695)
22 1gxr_A ESG1, transducin-like e 91.0 8.9 0.0003 34.8 30.4 108 14-130 15-126 (337)
23 3no0_A DNA gyrase subunit A; D 88.5 14 0.00048 33.5 21.4 214 48-370 22-247 (276)
24 4aez_A CDC20, WD repeat-contai 88.1 18 0.00061 34.2 28.8 100 10-130 103-203 (401)
25 3odt_A Protein DOA1; ubiquitin 86.6 17 0.00059 32.4 30.0 144 213-422 106-254 (313)
26 3k26_A Polycomb protein EED; W 86.5 19 0.00066 32.9 23.5 73 49-130 18-102 (366)
27 3sfz_A APAF-1, apoptotic pepti 86.1 46 0.0016 36.9 23.3 111 291-421 1130-1247(1249)
28 2zwa_A Leucine carboxyl methyl 85.8 36 0.0012 35.3 19.0 18 404-421 598-615 (695)
29 1gxr_A ESG1, transducin-like e 80.4 32 0.0011 30.8 28.6 95 298-420 236-334 (337)
30 3mkq_A Coatomer beta'-subunit; 80.1 60 0.0021 33.7 24.5 108 291-423 143-259 (814)
31 3mmy_A MRNA export factor; mRN 76.0 46 0.0016 30.2 20.9 111 290-423 129-247 (368)
32 4aez_A CDC20, WD repeat-contai 75.0 56 0.0019 30.6 27.8 57 62-130 105-163 (401)
33 3no0_A DNA gyrase subunit A; D 73.8 51 0.0017 29.7 20.0 124 289-425 68-198 (276)
34 3ii7_A Kelch-like protein 7; p 73.3 52 0.0018 29.6 13.3 17 350-367 192-208 (306)
35 2xyi_A Probable histone-bindin 73.1 65 0.0022 30.6 26.4 112 301-423 293-410 (430)
36 3zwl_B Eukaryotic translation 70.6 62 0.0021 29.3 25.8 29 395-423 316-346 (369)
37 4a11_B DNA excision repair pro 70.1 68 0.0023 29.6 30.2 120 289-427 246-369 (408)
38 3v7d_B Cell division control p 69.4 79 0.0027 30.1 34.8 149 212-423 271-421 (464)
39 3i2n_A WD repeat-containing pr 68.4 68 0.0023 28.9 22.1 105 297-423 179-291 (357)
40 1r5m_A SIR4-interacting protei 66.1 84 0.0029 29.1 24.9 99 298-422 259-360 (425)
41 3k26_A Polycomb protein EED; W 65.5 78 0.0027 28.6 27.2 123 290-421 233-364 (366)
42 3mkq_A Coatomer beta'-subunit; 61.6 1.5E+02 0.0052 30.6 25.6 99 9-129 24-125 (814)
43 4g56_B MGC81050 protein; prote 61.4 1E+02 0.0034 28.4 29.9 106 291-423 229-343 (357)
44 3jrp_A Fusion protein of prote 59.9 1E+02 0.0035 27.9 27.6 108 298-422 172-286 (379)
45 3v7d_B Cell division control p 59.5 1.2E+02 0.0041 28.7 32.6 109 289-423 271-381 (464)
46 1sq9_A Antiviral protein SKI8; 59.0 1.1E+02 0.0038 28.1 27.2 110 11-130 27-155 (397)
47 3no2_A Uncharacterized protein 58.7 99 0.0034 27.4 24.1 116 291-429 138-267 (276)
48 1r5m_A SIR4-interacting protei 57.2 1.2E+02 0.0041 27.9 26.3 119 291-421 292-423 (425)
49 3sfz_A APAF-1, apoptotic pepti 55.5 2.4E+02 0.0083 31.0 27.1 69 52-130 801-869 (1249)
50 1xip_A Nucleoporin NUP159; bet 54.4 1.5E+02 0.0051 28.2 12.4 98 291-419 90-187 (388)
51 1suu_A DNA gyrase subunit A; t 53.8 1.3E+02 0.0045 27.4 19.9 174 217-429 54-237 (312)
52 3uc1_A DNA gyrase subunit A; D 53.8 1.4E+02 0.0047 27.6 22.3 115 8-131 51-175 (327)
53 3p6j_A De novo designed beta-t 53.7 84 0.0029 25.1 11.0 106 289-418 30-138 (142)
54 4asc_A Kelch repeat and BTB do 53.3 32 0.0011 31.2 7.4 18 298-316 140-157 (315)
55 3no2_A Uncharacterized protein 52.7 1.2E+02 0.0042 26.8 21.2 22 352-374 245-266 (276)
56 3uc1_A DNA gyrase subunit A; D 52.1 1.5E+02 0.005 27.4 21.3 169 217-423 49-228 (327)
57 4gga_A P55CDC, cell division c 51.2 1.6E+02 0.0055 27.6 27.7 97 12-129 117-215 (420)
58 3mmy_A MRNA export factor; mRN 51.0 1.4E+02 0.0047 26.8 28.0 115 291-423 173-304 (368)
59 1zvt_A Topoisomerase IV subuni 50.7 1.3E+02 0.0045 26.5 11.4 84 45-132 28-114 (256)
60 3zwl_B Eukaryotic translation 50.3 1.4E+02 0.0048 26.7 28.4 68 50-130 33-103 (369)
61 1pgu_A Actin interacting prote 48.0 2.1E+02 0.0072 28.0 26.5 58 297-368 308-365 (615)
62 1sq9_A Antiviral protein SKI8; 47.5 1.7E+02 0.0057 26.8 28.4 74 49-130 16-98 (397)
63 3jro_A Fusion protein of prote 46.4 2.7E+02 0.0091 28.8 25.7 108 299-423 171-285 (753)
64 1pgu_A Actin interacting prote 46.1 2.2E+02 0.0076 27.8 30.4 111 290-424 448-573 (615)
65 1k3i_A Galactose oxidase precu 46.0 96 0.0033 31.7 10.4 57 299-367 245-305 (656)
66 3sjl_D Methylamine dehydrogena 45.8 2E+02 0.0069 27.2 13.3 76 49-129 69-155 (386)
67 1xip_A Nucleoporin NUP159; bet 45.7 79 0.0027 30.1 8.9 76 330-422 79-154 (388)
68 3ii7_A Kelch-like protein 7; p 45.0 74 0.0025 28.5 8.5 17 299-316 94-110 (306)
69 2xyi_A Probable histone-bindin 44.1 2.1E+02 0.0071 26.9 23.6 28 104-131 232-262 (430)
70 1suu_A DNA gyrase subunit A; t 44.0 1.9E+02 0.0064 26.4 22.7 86 45-132 42-133 (312)
71 1erj_A Transcriptional repress 42.7 2.1E+02 0.0071 26.5 26.0 116 290-421 258-387 (393)
72 3gre_A Serine/threonine-protei 42.6 2.1E+02 0.0073 26.6 16.7 27 104-130 112-140 (437)
73 3i2n_A WD repeat-containing pr 41.9 1.9E+02 0.0064 25.8 30.0 118 298-422 224-352 (357)
74 2qc5_A Streptogramin B lactona 41.5 1.7E+02 0.0059 25.3 23.4 16 62-77 23-38 (300)
75 1yfq_A Cell cycle arrest prote 40.1 2E+02 0.0068 25.5 24.7 28 213-240 152-179 (342)
76 2vpj_A Kelch-like protein 12; 40.0 1.9E+02 0.0064 25.5 10.4 16 405-421 246-261 (301)
77 3vl1_A 26S proteasome regulato 39.7 2.3E+02 0.0078 26.1 26.2 70 290-369 292-365 (420)
78 1q7f_A NHL, brain tumor CG1071 38.4 2E+02 0.0067 25.0 25.2 16 352-367 210-225 (286)
79 3jrp_A Fusion protein of prote 37.9 2.2E+02 0.0077 25.5 24.7 101 10-131 23-133 (379)
80 4g56_B MGC81050 protein; prote 37.6 2.4E+02 0.0082 25.7 32.7 107 290-421 183-299 (357)
81 3q7x_A De novo designed beta-t 37.6 42 0.0014 26.5 4.7 65 52-128 49-114 (132)
82 3q7x_A De novo designed beta-t 36.8 1.5E+02 0.0052 23.2 9.2 104 291-418 8-113 (132)
83 3f3f_A Nucleoporin SEH1; struc 36.6 2.2E+02 0.0074 24.9 29.2 73 50-131 12-89 (351)
84 1k8k_C P40, ARP2/3 complex 41 36.5 2.4E+02 0.0081 25.3 27.3 68 342-423 204-274 (372)
85 2vpj_A Kelch-like protein 12; 36.3 2.1E+02 0.0071 25.2 10.1 18 298-316 104-121 (301)
86 3jro_A Fusion protein of prote 35.5 3.9E+02 0.013 27.5 22.5 103 9-131 20-131 (753)
87 3p6j_A De novo designed beta-t 35.4 1.7E+02 0.0058 23.3 13.2 107 210-364 28-138 (142)
88 1zvu_A Topoisomerase IV subuni 34.3 4.1E+02 0.014 27.4 12.3 65 62-130 516-582 (716)
89 3vl1_A 26S proteasome regulato 33.9 2.8E+02 0.0096 25.4 33.0 101 300-423 261-365 (420)
90 1wp5_A Topoisomerase IV; broke 32.6 2.9E+02 0.01 25.2 24.0 213 216-466 45-269 (323)
91 1yfq_A Cell cycle arrest prote 31.3 2.7E+02 0.0093 24.5 31.1 120 289-422 151-281 (342)
92 2pm9_A Protein WEB1, protein t 31.1 3.1E+02 0.011 25.0 25.4 267 13-419 38-333 (416)
93 2z2n_A Virginiamycin B lyase; 30.7 2.6E+02 0.0088 24.0 24.0 16 62-77 18-33 (299)
94 4gqb_B Methylosome protein 50; 29.7 3.2E+02 0.011 24.8 30.8 26 105-130 84-110 (344)
95 1zi0_A DNA gyrase subunit A; b 29.4 3.2E+02 0.011 24.7 23.3 169 216-423 48-226 (307)
96 3fvz_A Peptidyl-glycine alpha- 29.3 3.1E+02 0.011 24.5 21.1 18 62-79 27-44 (329)
97 2woz_A Kelch repeat and BTB do 28.3 3.2E+02 0.011 24.3 10.7 16 351-367 151-166 (318)
98 3gre_A Serine/threonine-protei 27.3 3.8E+02 0.013 24.8 20.1 27 213-239 216-244 (437)
99 3vgz_A Uncharacterized protein 25.7 3.5E+02 0.012 23.9 25.5 17 406-422 317-334 (353)
100 1zi0_A DNA gyrase subunit A; b 25.2 3.8E+02 0.013 24.2 22.9 116 8-132 51-176 (307)
101 4ery_A WD repeat-containing pr 25.1 3.4E+02 0.012 23.6 27.4 54 354-421 253-310 (312)
102 4a11_B DNA excision repair pro 24.5 3.9E+02 0.013 24.1 33.1 81 49-130 43-129 (408)
103 3hrp_A Uncharacterized protein 21.8 5E+02 0.017 24.3 21.4 16 62-77 134-149 (409)
104 4gqb_B Methylosome protein 50; 20.1 4.8E+02 0.017 23.5 27.7 65 342-421 259-329 (344)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2e-73 Score=566.80 Aligned_cols=373 Identities=27% Similarity=0.455 Sum_probs=317.8
Q ss_pred cccchhhceeeeeEEEEeecC-CCCCCCCC--CCccceecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCc
Q 012245 8 REENEKMEECKETVVYMWGYL-PGTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (467)
Q Consensus 8 ~~~~~~~~~~~~~~v~~WG~~-~~~~~~~~--~~~~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~l 84 (467)
.++.+.++++.+++||+||.| .+||+... ....|+|+..+...+|++|++|.. |+++|+++|+||+||.|. .|||
T Consensus 8 ~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~l~~~G~v~~wG~n~-~GqL 85 (389)
T 3kci_A 8 SSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQ-TLFAVTADGKLYATGYGA-GGRL 85 (389)
T ss_dssp -------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETT-EEEEEETTSCEEEEECCG-GGTT
T ss_pred cCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCC-eEEEEcCCCcEEEEECCC-CCCC
Confidence 456677899999999999999 79998654 345677777777889999999964 999999999999999998 8999
Q ss_pred cccCCCCcCcccccCCCCCC--CeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCC
Q 012245 85 YLTSGKHGETPEPFPLPTEA--SVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (467)
Q Consensus 85 g~~~~~~~~~p~~v~~~~~~--~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (467)
|.+.......|.+++.+... ++++|+||..|++||+++|+||+||.|.+||||...
T Consensus 86 G~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~---------------------- 143 (389)
T 3kci_A 86 GIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN---------------------- 143 (389)
T ss_dssp SSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS----------------------
T ss_pred CCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC----------------------
Confidence 99987777788877755544 458999999999999999999999999999777421
Q ss_pred CCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCc
Q 012245 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242 (467)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~g 242 (467)
......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+|
T Consensus 144 ----------------------------------~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~G 189 (389)
T 3kci_A 144 ----------------------------------RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYG 189 (389)
T ss_dssp ----------------------------------CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGG
T ss_pred ----------------------------------CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCC
Confidence 1123457777777777999999999999999999999999999999
Q ss_pred ccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecC--ceEEEEecCCcEEEEeeCCCCc
Q 012245 243 QLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGG--RHSAVVTDAGALLTFGWGLYGQ 320 (467)
Q Consensus 243 qlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~--~~s~~lt~~g~v~~wG~n~~gq 320 (467)
|||.+.. .....|+++..+.. .+|++|+||. +|+++|+++|+||+||.|.+||
T Consensus 190 qLG~~~~-~~~~~p~~v~~~~~------------------------~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~Gq 244 (389)
T 3kci_A 190 RLGHSDS-EDQLKPKLVEALQG------------------------HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244 (389)
T ss_dssp TTCSSSC-CCEEEEEECGGGTT------------------------SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGT
T ss_pred CcCCCCC-cccccceEecccCC------------------------CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCC
Confidence 9999876 34467777776655 6799999995 8999999999999999999999
Q ss_pred ccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEE
Q 012245 321 CGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVV 400 (467)
Q Consensus 321 lG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i 400 (467)
||.+.......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.......|..++. +...+|++|
T Consensus 245 LG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~v~~i 322 (389)
T 3kci_A 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAI 322 (389)
T ss_dssp TSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG--GTTCCEEEE
T ss_pred CCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc--CCCCCEEEE
Confidence 999998888999999999888999999999999999999999999999999999998888888888774 677899999
Q ss_pred EecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEee-cCCCceEEEEecCCeEEEEEcCC
Q 012245 401 SCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVP-IHGFLPRNIACGWWHTLLLAETT 465 (467)
Q Consensus 401 ~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~-~~~~~v~~v~~G~~hs~~l~~~g 465 (467)
+||.+|++||+++|+||+||.|.+||||.|+..+...|++|+ +.+.+|.+|+||.+||+||++++
T Consensus 323 a~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 323 ATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp EECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred EeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence 999999999999999999999999999999999999999998 66789999999999999999875
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.3e-70 Score=546.84 Aligned_cols=375 Identities=25% Similarity=0.412 Sum_probs=310.2
Q ss_pred ccccchhhceeeeeEEEEeecC-CCCCCCCCCC---ccceecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCC
Q 012245 7 KREENEKMEECKETVVYMWGYL-PGTSPEKSPI---LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (467)
Q Consensus 7 ~~~~~~~~~~~~~~~v~~WG~~-~~~~~~~~~~---~~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g 82 (467)
+....|-++++.+++||+||.| .++|+.+... ..|+++. ...+|++|++|.. |+++|+++|+||+||.|. .|
T Consensus 14 ~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~--~~~~i~~va~G~~-hs~~l~~~G~v~~wG~n~-~G 89 (413)
T 1a12_A 14 KVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS--IPEDVVQAEAGGM-HTVCLSKSGQVYSFGCND-EG 89 (413)
T ss_dssp CCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEEC--CSSCEEEEEECSS-EEEEEETTSCEEEEECCT-TS
T ss_pred hhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEcc--CCCCeEEEEeCCC-eEEEEcCCCCEEEEECCC-CC
Confidence 3455678899999999999999 7999988653 3455554 4589999999975 999999999999999998 89
Q ss_pred CccccCCC--CcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeC--CCCcCCCccccccCCCCccccCcCCCCC
Q 012245 83 QSYLTSGK--HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQS 158 (467)
Q Consensus 83 ~lg~~~~~--~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~--n~~g~~g~~~~~~~~~~~~~~~~~g~~~ 158 (467)
|||.+... ....|.++.++ .+|++|+||.+|++||+++|+||+||. |.+||||.....
T Consensus 90 qLG~~~~~~~~~~~P~~v~l~--~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~---------------- 151 (413)
T 1a12_A 90 ALGRDTSVEGSEMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM---------------- 151 (413)
T ss_dssp TTCSCCCSTTGGGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBT----------------
T ss_pred CCCCCCCCCccccCCeEecCC--CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCcc----------------
Confidence 99988653 34567777554 489999999999999999999999998 888766532100
Q ss_pred CCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEc
Q 012245 159 ALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGY 238 (467)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~ 238 (467)
.....|.++ +...+|++|+||.+|+++|+++|+||+||.
T Consensus 152 ---------------------------------------~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~ 190 (413)
T 1a12_A 152 ---------------------------------------KKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGC 190 (413)
T ss_dssp ---------------------------------------BCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred ---------------------------------------ccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeC
Confidence 012235555 445589999999999999999999999999
Q ss_pred CCCcccCCCCCCc----------cccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCC
Q 012245 239 GGEGQLGLGSRIK----------MVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAG 308 (467)
Q Consensus 239 n~~gqlg~~~~~~----------~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g 308 (467)
|.+||||.+.... ....|+.+..... ......+|++|+||.+|+++|+++|
T Consensus 191 n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~-------------------g~~~~~~i~~ia~G~~hs~alt~~G 251 (413)
T 1a12_A 191 GEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSR-------------------GSRGHVRFQDAFCGAYFTFAISHEG 251 (413)
T ss_dssp CTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCS-------------------SCCSBCCEEEEEEETTEEEEEETTC
T ss_pred CCCCccCCCccccccccccccccccccCceEeeccc-------------------cccCCccEEEEEeCCCEEEEEeCCC
Confidence 9999999875311 1133433322100 0002267999999999999999999
Q ss_pred cEEEEeeCCCCcccCCCCCCccCceeccccCC--ccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCC-CCCCCccce
Q 012245 309 ALLTFGWGLYGQCGHGSTNDQLRPSYASSLMD--IQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTG-VDQAENVPK 385 (467)
Q Consensus 309 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~-~~~~~~~p~ 385 (467)
+||+||.|.+||||.+.......|++|..+.+ .+|++|+||.+|+++|+++|+||+||+|.+||||.+ .......|+
T Consensus 252 ~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~ 331 (413)
T 1a12_A 252 HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT 331 (413)
T ss_dssp CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEE
T ss_pred CEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCE
Confidence 99999999999999999888899999998876 679999999999999999999999999999999998 445566777
Q ss_pred eeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEee---cCCCceEEEEecCCeEEEEE
Q 012245 386 LLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVP---IHGFLPRNIACGWWHTLLLA 462 (467)
Q Consensus 386 ~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~---~~~~~v~~v~~G~~hs~~l~ 462 (467)
+++. +. +|++|+||.+|++||+++|+||+||.|.+||||.++..+...|++|. +.+.+|++|+||.+|++||+
T Consensus 332 ~v~~--l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~ 407 (413)
T 1a12_A 332 LISR--LP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 407 (413)
T ss_dssp ECCS--SS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEE
T ss_pred Eecc--cC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEE
Confidence 7764 33 89999999999999999999999999999999999998888999997 35678999999999999999
Q ss_pred cCCCC
Q 012245 463 ETTQI 467 (467)
Q Consensus 463 ~~g~i 467 (467)
++++.
T Consensus 408 ~~g~~ 412 (413)
T 1a12_A 408 KDKEQ 412 (413)
T ss_dssp EECSC
T ss_pred ecCCC
Confidence 99874
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-68 Score=538.63 Aligned_cols=366 Identities=23% Similarity=0.327 Sum_probs=302.4
Q ss_pred ccchhhceeeeeEEEEeecC-CCCCCCCCC-CccceecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccc
Q 012245 9 EENEKMEECKETVVYMWGYL-PGTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYL 86 (467)
Q Consensus 9 ~~~~~~~~~~~~~v~~WG~~-~~~~~~~~~-~~~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~ 86 (467)
...+-+.++.+++||+||.| .++|+.+.. ...+.|.++....+|++|++|+. |+++|+++|+||+||.|. .||||.
T Consensus 32 g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~-h~~~l~~~G~v~~wG~n~-~GqLG~ 109 (423)
T 3mvd_K 32 HLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGM-HNLVLTKSGDIYSFGCND-EGALGR 109 (423)
T ss_dssp CCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSS-EEEEEETTSCEEEEECCS-SSTTCS
T ss_pred CCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCC-eEEEEeCCCeEEEeECCC-CcCCCC
Confidence 44556789999999999999 799998854 23334444444467999999975 999999999999999998 899999
Q ss_pred cCCCC--cCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeC--CCCcCCCccccccCCCCccccCcCCCCCCCCC
Q 012245 87 TSGKH--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (467)
Q Consensus 87 ~~~~~--~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~--n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (467)
+.... ...|.++.++ .+|++|+||..|++||+++|+||+||. |.+||||....
T Consensus 110 ~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~--------------------- 166 (423)
T 3mvd_K 110 DTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID--------------------- 166 (423)
T ss_dssp CCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTT---------------------
T ss_pred CCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCC---------------------
Confidence 87654 3456655543 589999999999999999999999998 88886663211
Q ss_pred CCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCc
Q 012245 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242 (467)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~g 242 (467)
...|.++.++...+|++|+||.+|++||+++|+||+||.|.+|
T Consensus 167 -------------------------------------~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~G 209 (423)
T 3mvd_K 167 -------------------------------------GNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQG 209 (423)
T ss_dssp -------------------------------------BCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred -------------------------------------CCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCC
Confidence 0124445666777999999999999999999999999999999
Q ss_pred ccCCCCCCc----------cccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEE-ecCCcEE
Q 012245 243 QLGLGSRIK----------MVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVV-TDAGALL 311 (467)
Q Consensus 243 qlg~~~~~~----------~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~l-t~~g~v~ 311 (467)
|||.+.... ....|.++..... .+|++|+||.+|++++ +++|+||
T Consensus 210 qLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~------------------------~~v~~i~~g~~~~~~~~~~~g~v~ 265 (423)
T 3mvd_K 210 QLGRLSERSISGEGRRGKRDLLRPTQLIITRA------------------------KPFEAIWATNYCTFMRESQTQVIW 265 (423)
T ss_dssp TTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC------------------------CCEEEEEEETTEEEEEETTTCCEE
T ss_pred ccCCCcccccccccccccccccCCeEEeecCC------------------------ccEEEEEECCcEEEEEECCCCeEE
Confidence 999976422 2334544443322 6799999999999999 6999999
Q ss_pred EEeeCCCCcccCCCCCC--ccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCC-Cccceeee
Q 012245 312 TFGWGLYGQCGHGSTND--QLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQA-ENVPKLLE 388 (467)
Q Consensus 312 ~wG~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~-~~~p~~v~ 388 (467)
+||.|.++|||.+.... ...|.++. + .+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|.+++
T Consensus 266 ~wG~n~~gqlg~~~~~~~~~~~p~~~~-~--~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~ 342 (423)
T 3mvd_K 266 ATGLNNFKQLAHETKGKEFALTPIKTE-L--KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVK 342 (423)
T ss_dssp EEEECTTCTTSSCCTTCSEEEEEEEEC-C--CSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECT
T ss_pred EEeCCCCCcCCCCCCCCceeeeeEEcC-C--CCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEec
Confidence 99999999999965443 34566655 3 3699999999999999999999999999999999998655 34677665
Q ss_pred cCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEee---cCCCceEEEEecCCeEEEEEcCC
Q 012245 389 TPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVP---IHGFLPRNIACGWWHTLLLAETT 465 (467)
Q Consensus 389 ~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~---~~~~~v~~v~~G~~hs~~l~~~g 465 (467)
. +.. +|++|+||.+|++||+++|+||+||.|.+||||+|+..+...|++|. +.+.+|.+|+||.+||++|++++
T Consensus 343 ~--l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 343 K--LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp T--CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC
T ss_pred c--CCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEccc
Confidence 3 444 89999999999999999999999999999999999999999999998 45778999999999999999987
Q ss_pred C
Q 012245 466 Q 466 (467)
Q Consensus 466 ~ 466 (467)
+
T Consensus 420 k 420 (423)
T 3mvd_K 420 K 420 (423)
T ss_dssp -
T ss_pred c
Confidence 5
No 4
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-68 Score=534.81 Aligned_cols=349 Identities=32% Similarity=0.554 Sum_probs=309.1
Q ss_pred ccchhhceeeeeEEEEeecC-CCCCCCCCCCc--cceecccCCCCCceeeecCCcceeEEEecCC-cEEEecCCCCCCCc
Q 012245 9 EENEKMEECKETVVYMWGYL-PGTSPEKSPIL--SPIPARLCGGDSWKDVCGGGCGFALATSESG-KLITWGSADDEGQS 84 (467)
Q Consensus 9 ~~~~~~~~~~~~~v~~WG~~-~~~~~~~~~~~--~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G-~vy~wG~~~~~g~l 84 (467)
-..|-++++.+++||+||.| .++|+.+.... .|+++..+...+|++|++|.. |+++|+++| +||+||.|. .|||
T Consensus 24 G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~-ht~al~~~gg~v~~wG~n~-~GqL 101 (406)
T 4d9s_A 24 GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD-HTVAYSQSGMEVYSWGWGD-FGRL 101 (406)
T ss_dssp CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTTTEEEEEECCG-GGTT
T ss_pred CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc-eEEEEECCCCEEEEEcCCC-CcCC
Confidence 34567899999999999999 79999876554 455555566789999999976 999999886 999999998 8999
Q ss_pred cccCCCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCC
Q 012245 85 YLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQ 164 (467)
Q Consensus 85 g~~~~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (467)
|.+.......|.++..+...+|++|+||..|++||+++|+||+||.|.+||||...
T Consensus 102 G~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~------------------------ 157 (406)
T 4d9s_A 102 GHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD------------------------ 157 (406)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS------------------------
T ss_pred CCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCC------------------------
Confidence 99988777888888877778999999999999999999999999999999777421
Q ss_pred CCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCccc
Q 012245 165 APPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQL 244 (467)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gql 244 (467)
......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+|||
T Consensus 158 --------------------------------~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~Gql 205 (406)
T 4d9s_A 158 --------------------------------TEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNL 205 (406)
T ss_dssp --------------------------------CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred --------------------------------CCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCC
Confidence 112345777777777799999999999999999999999999999999
Q ss_pred CCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCC
Q 012245 245 GLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHG 324 (467)
Q Consensus 245 g~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~ 324 (467)
|.+... ....|.++..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 206 G~g~~~-~~~~p~~v~~~~~------------------------~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g 260 (406)
T 4d9s_A 206 GLGDRT-DRLVPERVTSTGG------------------------EKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 260 (406)
T ss_dssp CSSSSC-CEEEEEECCCSTT------------------------CCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSS
T ss_pred CCCCCC-CcCccEEecccCC------------------------ceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCC
Confidence 998763 3356766665543 679999999999999999999999999999999999
Q ss_pred CCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecC
Q 012245 325 STNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGA 404 (467)
Q Consensus 325 ~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~ 404 (467)
.......|.++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.......|.+++. +...+|++|+||.
T Consensus 261 ~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~--~~~~~v~~va~G~ 338 (406)
T 4d9s_A 261 DLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRF--PDDQKVVQVSCGW 338 (406)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECC--GGGCCEEEEEECS
T ss_pred CCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEec--cCCCcEEEEEeCC
Confidence 99889999999999888999999999999999999999999999999999999888888988876 4456899999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEee
Q 012245 405 RHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVP 442 (467)
Q Consensus 405 ~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~ 442 (467)
+|++||+++|+||+||.|.+||||+|+..++..|++|+
T Consensus 339 ~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 376 (406)
T 4d9s_A 339 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 376 (406)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred CeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEee
Confidence 99999999999999999999999999999999999987
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-68 Score=542.34 Aligned_cols=368 Identities=24% Similarity=0.353 Sum_probs=299.6
Q ss_pred hhhceeeeeEEEEeecC-CCCCCCCCC-----CccceecccC--CCCCceeeecCCcceeEEEecCCcEEEecCCCCCCC
Q 012245 12 EKMEECKETVVYMWGYL-PGTSPEKSP-----ILSPIPARLC--GGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ 83 (467)
Q Consensus 12 ~~~~~~~~~~v~~WG~~-~~~~~~~~~-----~~~p~~~~~~--~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~ 83 (467)
+.+.+..+++||+||.| .++|+.+.. ...|++++.+ ...+|++|++|+. |+++|+++|+||+||.|. .||
T Consensus 21 h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~-Ht~alt~~G~v~~wG~n~-~Gq 98 (473)
T 3of7_A 21 HMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGM-HTLALDEESNVWSWGCND-VGA 98 (473)
T ss_dssp HHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSS-EEEEEETTCCEEEEECCT-TST
T ss_pred ccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCC-eEEEEecCCeEEEeECCC-CCC
Confidence 56788999999999999 799998863 3456666554 4679999999976 999999999999999998 899
Q ss_pred ccccCCCC-----------------------cCcccccCC---C---CCCCeeEEecCccEEEEEecCCcEEEeeC--CC
Q 012245 84 SYLTSGKH-----------------------GETPEPFPL---P---TEASVVKAAAGWAHCVSVTEAGEVYTWGW--RE 132 (467)
Q Consensus 84 lg~~~~~~-----------------------~~~p~~v~~---~---~~~~i~~is~G~~h~~aLt~~G~v~~wG~--n~ 132 (467)
||.+.... ...|.+++. + ...+|++|+||..|++||+++|+||+||. |.
T Consensus 99 LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~ 178 (473)
T 3of7_A 99 LGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCN 178 (473)
T ss_dssp TCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEET
T ss_pred CCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCC
Confidence 99876543 345666652 2 35789999999999999999999999998 45
Q ss_pred CcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCC
Q 012245 133 CVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGV 212 (467)
Q Consensus 133 ~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~ 212 (467)
.||||.... .......|.++..+.+.
T Consensus 179 ~GqLG~~~~------------------------------------------------------~~~~~~~P~~v~~l~~~ 204 (473)
T 3of7_A 179 EGILGFYQD------------------------------------------------------KIKIQKTPWKVPTFSKY 204 (473)
T ss_dssp TEEEESBTT------------------------------------------------------TBSCEEEEEECCCCCSS
T ss_pred CCccCCCCC------------------------------------------------------CCccccCcEEccccCCC
Confidence 665553110 01133457777777767
Q ss_pred cEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCcc---ccCCcccccccccccCCCCcceeecCcccCCCCCCCc
Q 012245 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKM---VPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRS 289 (467)
Q Consensus 213 ~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~---~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (467)
+|++|+||.+|++||+++|+||+||.|.+||||.+..... ...|.++.. .
T Consensus 205 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---------------------------~ 257 (473)
T 3of7_A 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---------------------------R 257 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---------------------------C
T ss_pred CEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC---------------------------c
Confidence 8999999999999999999999999999999999865321 223333321 4
Q ss_pred cEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCC----CccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEE
Q 012245 290 YVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTN----DQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVF 365 (467)
Q Consensus 290 ~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~w 365 (467)
+|++|+||.+|++||+++|+||+||.|.+||||.+... ....|++|..+.+.+|++|+||.+|+++|+++|+||+|
T Consensus 258 ~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~w 337 (473)
T 3of7_A 258 HVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSC 337 (473)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred ceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEE
Confidence 69999999999999999999999999999999998754 24579999988888999999999999999999999999
Q ss_pred eCCCCCcccCCCCC------------CCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCC-C
Q 012245 366 GGNQFGQLGTGVDQ------------AENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGD-S 432 (467)
Q Consensus 366 G~n~~gqlG~~~~~------------~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~-~ 432 (467)
|+|.+||||.+... ....|.+...+.+ .+|++|+||.+|++||+++|+||+||.|.+||||+|+ .
T Consensus 338 G~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~--~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~ 415 (473)
T 3of7_A 338 GRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV--PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFE 415 (473)
T ss_dssp EECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS--CCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCC
T ss_pred ECCCCCccCCCccccccccccccCCceeeeccCcccCCC--CceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCC
Confidence 99999999987532 1112222222222 2799999999999999999999999999999999998 7
Q ss_pred CCcccceEee---cCCCceEEEEecCCeEEEEEcC
Q 012245 433 IDRNIPSLVP---IHGFLPRNIACGWWHTLLLAET 464 (467)
Q Consensus 433 ~~~~~p~~v~---~~~~~v~~v~~G~~hs~~l~~~ 464 (467)
.+...|++|+ +.+.+|++|+||.+||+++.+.
T Consensus 416 ~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 416 DDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp SCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred ccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 7788899997 4467899999999999999763
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.6e-67 Score=527.00 Aligned_cols=334 Identities=31% Similarity=0.590 Sum_probs=300.4
Q ss_pred CCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCccEEEEEecCC-cEEE
Q 012245 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAG-EVYT 127 (467)
Q Consensus 49 ~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G-~v~~ 127 (467)
..+|++|++|+. |+++|+++|+||+||+|. .||||.+.......|+++..+...+|++|+||..|++||+++| +||+
T Consensus 15 ~~~v~~ia~G~~-hs~al~~~g~v~~wG~n~-~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 15 PRKVLIISAGAS-HSVALLSGDIVCSWGRGE-DGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CCCEEEEEECSS-EEEEEETTTEEEEEECCT-TSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred ccceEEEecCCC-eEEEEEeCCEEEEEeCCC-CCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 478999999975 999999999999999998 8999999888778888887777789999999999999999986 9999
Q ss_pred eeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEe
Q 012245 128 WGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVT 207 (467)
Q Consensus 128 wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~ 207 (467)
||.|.+||||... ......|.++.
T Consensus 93 wG~n~~GqLG~g~--------------------------------------------------------~~~~~~p~~v~ 116 (406)
T 4d9s_A 93 WGWGDFGRLGHGN--------------------------------------------------------SSDLFTPLPIK 116 (406)
T ss_dssp EECCGGGTTCSSS--------------------------------------------------------CCCEEEEEECG
T ss_pred EcCCCCcCCCCCC--------------------------------------------------------CCccccceEec
Confidence 9999999777421 11234567777
Q ss_pred cCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCC
Q 012245 208 LNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAG 287 (467)
Q Consensus 208 ~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (467)
.+...+|++|+||.+|++||+++|+||+||.|.+||||.+... ....|+++..+..
T Consensus 117 ~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~~~~----------------------- 172 (406)
T 4d9s_A 117 ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE-DSLVPQKIQAFEG----------------------- 172 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCC-CEEEEEECGGGTT-----------------------
T ss_pred ccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCC-CcccceEecccCC-----------------------
Confidence 7777799999999999999999999999999999999998763 3456777766554
Q ss_pred CccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeC
Q 012245 288 RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGG 367 (467)
Q Consensus 288 ~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~ 367 (467)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.
T Consensus 173 -~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~ 251 (406)
T 4d9s_A 173 -IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 251 (406)
T ss_dssp -CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred -CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeC
Confidence 6799999999999999999999999999999999999988999999998888899999999999999999999999999
Q ss_pred CCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEeecC-CC
Q 012245 368 NQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIH-GF 446 (467)
Q Consensus 368 n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~-~~ 446 (467)
|.+||||.+.......|.+++. +...+|++|+||.+|++||+++|+||+||.|.+||||.++..+...|+++.++ ..
T Consensus 252 n~~GqlG~g~~~~~~~p~~v~~--~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~ 329 (406)
T 4d9s_A 252 SKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ 329 (406)
T ss_dssp CTTSTTCSSSCCCEEEEEECGG--GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGC
T ss_pred CCCCCCCCCCCcCccccEEecc--cCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCC
Confidence 9999999998888888888775 66778999999999999999999999999999999999999888899999854 56
Q ss_pred ceEEEEecCCeEEEEEcCCCC
Q 012245 447 LPRNIACGWWHTLLLAETTQI 467 (467)
Q Consensus 447 ~v~~v~~G~~hs~~l~~~g~i 467 (467)
+|++|+||.+|++||+++|+|
T Consensus 330 ~v~~va~G~~hs~alt~~G~v 350 (406)
T 4d9s_A 330 KVVQVSCGWRHTLAVTERNNV 350 (406)
T ss_dssp CEEEEEECSSEEEEEETTSCE
T ss_pred cEEEEEeCCCeEEEEeCCCCE
Confidence 899999999999999999975
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-64 Score=501.04 Aligned_cols=323 Identities=31% Similarity=0.504 Sum_probs=278.1
Q ss_pred ceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccc
Q 012245 61 GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVT 140 (467)
Q Consensus 61 ~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~ 140 (467)
.+.++|++||+||+||.|. .||||.+.......|+++..+...+|++|+||..|+++|+++|+||+||.|.+||||...
T Consensus 11 ~~~~~l~~~G~v~~wG~n~-~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNH-RGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ----------CEEEEEECT-TSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred ccceeECCCCeEEEeeCCC-CccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 4778999999999999998 899998877777788888877778899999999999999999999999999999777421
Q ss_pred cccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCC--cEEEEE
Q 012245 141 RDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGV--KITKVA 218 (467)
Q Consensus 141 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~--~i~~Ia 218 (467)
. .....|.++...... ++++|+
T Consensus 90 ~--------------------------------------------------------~~~~~p~~v~~~~~~~~~~v~i~ 113 (389)
T 3kci_A 90 T--------------------------------------------------------ESVSTPTLLESIQHVFIKKVAVN 113 (389)
T ss_dssp S--------------------------------------------------------CCEEEEEECGGGTTSCEEEEEEC
T ss_pred c--------------------------------------------------------CCccCCEEcccccCCceeEEEEC
Confidence 1 122446666655443 458899
Q ss_pred eCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecC
Q 012245 219 AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGG 298 (467)
Q Consensus 219 ~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~ 298 (467)
||.+|++||+++|+||+||.|.+||||.+.. .....|+++..+.. .+|++|+||.
T Consensus 114 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~------------------------~~i~~va~G~ 168 (389)
T 3kci_A 114 SGGKHCLALSSEGEVYSWGEAEDGKLGHGNR-SPCDRPRVIESLRG------------------------IEVVDVAAGG 168 (389)
T ss_dssp TTCSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTT------------------------SCEEEEEECS
T ss_pred cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC-ccCcCCeEecccCC------------------------CeEEEEEeCc
Confidence 9999999999999999999999999999876 33466777766554 6799999999
Q ss_pred ceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC--CeEEEEEcCCcEEEEeCCCCCcccCC
Q 012245 299 RHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL--WHTVCISVEGRVYVFGGNQFGQLGTG 376 (467)
Q Consensus 299 ~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~al~~~g~vy~wG~n~~gqlG~~ 376 (467)
+|+++|+++|+||+||.|.+||||.+.......|+++..+.+.+|++|+||. +|+++|+++|+||+||.|.+||||.+
T Consensus 169 ~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g 248 (389)
T 3kci_A 169 AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG 248 (389)
T ss_dssp SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSS
T ss_pred CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999989999999995 89999999999999999999999999
Q ss_pred CCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEee-cCCCceEEEEecC
Q 012245 377 VDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVP-IHGFLPRNIACGW 455 (467)
Q Consensus 377 ~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~-~~~~~v~~v~~G~ 455 (467)
.......|.+++. +...+|++|+||.+|++||+++|+||+||.|.+||||.++..+...|+++. +.+.+|++|+||.
T Consensus 249 ~~~~~~~p~~v~~--~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~ 326 (389)
T 3kci_A 249 GSDGCKVPMKIDS--LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS 326 (389)
T ss_dssp SCCCEEEEEECGG--GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS
T ss_pred CCCCccccEEecc--cCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc
Confidence 8877788888764 667789999999999999999999999999999999999988888999998 6677899999999
Q ss_pred CeEEEEEcCCCC
Q 012245 456 WHTLLLAETTQI 467 (467)
Q Consensus 456 ~hs~~l~~~g~i 467 (467)
+|++||+++|+|
T Consensus 327 ~h~~al~~~G~v 338 (389)
T 3kci_A 327 LHCVCCTEDGEV 338 (389)
T ss_dssp SEEEEEETTCCE
T ss_pred CeEEEECCCCCE
Confidence 999999999975
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.9e-62 Score=492.05 Aligned_cols=320 Identities=29% Similarity=0.449 Sum_probs=270.0
Q ss_pred cceeEEEecCCcEEEecCCCCCCCccccCCCC-cCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCc
Q 012245 60 CGFALATSESGKLITWGSADDEGQSYLTSGKH-GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138 (467)
Q Consensus 60 ~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~-~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~ 138 (467)
..|+++|+++|+||+||.|. .||||.+.... ...|+++..+ .+|++|+||..|+++|+++|+||+||.|.+||||.
T Consensus 17 ~~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~ 93 (413)
T 1a12_A 17 VSHRSHSTEPGLVLTLGQGD-VGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR 93 (413)
T ss_dssp CCCTTCCCCCBEEEEEEECT-TSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred cccceeecCCCcEEEEECCC-CCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCC
Confidence 35999999999999999997 89999987644 4567766644 68999999999999999999999999999997774
Q ss_pred cccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEE
Q 012245 139 VTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVA 218 (467)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia 218 (467)
.... ......|.++.+.. +|++|+
T Consensus 94 ~~~~------------------------------------------------------~~~~~~P~~v~l~~--~i~~va 117 (413)
T 1a12_A 94 DTSV------------------------------------------------------EGSEMVPGKVELQE--KVVQVS 117 (413)
T ss_dssp CCCS------------------------------------------------------TTGGGSCEECCCCS--CEEEEE
T ss_pred CCCC------------------------------------------------------CccccCCeEecCCC--cEEEEe
Confidence 3210 01234577675543 899999
Q ss_pred eCCCeeEEEecCCcEEEEEc--CCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEee
Q 012245 219 AGGRHTLILSDMGQVWGWGY--GGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIAC 296 (467)
Q Consensus 219 ~G~~h~~alt~~G~vy~wG~--n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~ 296 (467)
||.+|++||+++|+||+||. |.+||||.+........|.++.. . .+|++|+|
T Consensus 118 ~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~--~------------------------~~i~~ia~ 171 (413)
T 1a12_A 118 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL--D------------------------VPVVKVAS 171 (413)
T ss_dssp ECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECC--S------------------------SCEEEEEE
T ss_pred cCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecC--C------------------------CCEEEEEe
Confidence 99999999999999999999 99999999876544445666521 1 57999999
Q ss_pred cCceEEEEecCCcEEEEeeCCCCcccCCCCC-----------CccCceecccc-----CCccEEEEEeCCCeEEEEEcCC
Q 012245 297 GGRHSAVVTDAGALLTFGWGLYGQCGHGSTN-----------DQLRPSYASSL-----MDIQVEQIAAGLWHTVCISVEG 360 (467)
Q Consensus 297 G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~-----------~~~~p~~v~~~-----~~~~i~~v~~G~~~~~al~~~g 360 (467)
|.+|+++|+++|+||+||.|.+||||.+... ....|+.+... .+.+|++|+||.+|+++|+++|
T Consensus 172 G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G 251 (413)
T 1a12_A 172 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG 251 (413)
T ss_dssp CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTC
T ss_pred cCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCC
Confidence 9999999999999999999999999987532 12467666543 4468999999999999999999
Q ss_pred cEEEEeCCCCCcccCCCCCCCccceeeecCccCC--CceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCC-CCCCccc
Q 012245 361 RVYVFGGNQFGQLGTGVDQAENVPKLLETPILES--KRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLG-DSIDRNI 437 (467)
Q Consensus 361 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~--~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g-~~~~~~~ 437 (467)
+||+||.|.+||||.+.......|..++. +.. .+|++|+||.+|++||+++|+||+||.|.+||||.+ +..+...
T Consensus 252 ~v~~wG~n~~gqLG~~~~~~~~~P~~v~~--l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~ 329 (413)
T 1a12_A 252 HVYGFGLSNYHQLGTPGTESCFIPQNLTS--FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSI 329 (413)
T ss_dssp CEEEEECCTTSTTSCSSCSCEEEEEECGG--GCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEE
T ss_pred CEEEEeCCCCcCCCCCCCCcccccEEchh--ccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccC
Confidence 99999999999999998877888888764 444 679999999999999999999999999999999999 5566778
Q ss_pred ceEeecCCCceEEEEecCCeEEEEEcCCCC
Q 012245 438 PSLVPIHGFLPRNIACGWWHTLLLAETTQI 467 (467)
Q Consensus 438 p~~v~~~~~~v~~v~~G~~hs~~l~~~g~i 467 (467)
|++|+... +|++|+||.+|++||+++|+|
T Consensus 330 P~~v~~l~-~v~~v~~G~~hs~alt~~G~v 358 (413)
T 1a12_A 330 PTLISRLP-AVSSVACGASVGYAVTKDGRV 358 (413)
T ss_dssp EEECCSSS-SEEEEEECSSEEEEEETTSCE
T ss_pred CEEecccC-ceeEEEECcceEEEEeCCCCE
Confidence 99988544 899999999999999999875
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-61 Score=484.95 Aligned_cols=330 Identities=25% Similarity=0.316 Sum_probs=268.5
Q ss_pred CCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCC-CCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEE
Q 012245 48 GGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG-KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVY 126 (467)
Q Consensus 48 ~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~-~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~ 126 (467)
+..++++|++|. .|+++|+++|+||+||.|. .||||.+.. .....|.+++.+ .+|++|+||..|++||+++|+||
T Consensus 22 ~~~~~~~ia~g~-~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~~~~~~p~~v~~l--~~v~~va~G~~h~~~l~~~G~v~ 97 (423)
T 3mvd_K 22 PKAKRARIAFHL-ELPKRRTVLGNVLVCGNGD-VGQLGLGEDILERKRLSPVAGI--PDAVDISAGGMHNLVLTKSGDIY 97 (423)
T ss_dssp -------CCCCC-CCCCCCCCCEEEEEEEECT-TSTTCSCSSCCEEEEEEECCSC--SSEEEEEECSSEEEEEETTSCEE
T ss_pred ccceeeEEecCC-ccceeecCCCcEEEEeCCC-CCCCCCCCCCccCcCCeEccCC--CCceEEeeCCCeEEEEeCCCeEE
Confidence 346778899985 4999999999999999998 899999864 334456666544 46999999999999999999999
Q ss_pred EeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEE
Q 012245 127 TWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLV 206 (467)
Q Consensus 127 ~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 206 (467)
+||.|.+||||..... ......|.++
T Consensus 98 ~wG~n~~GqLG~~~~~------------------------------------------------------~~~~~~P~~v 123 (423)
T 3mvd_K 98 SFGCNDEGALGRDTSE------------------------------------------------------DGSESKPDLI 123 (423)
T ss_dssp EEECCSSSTTCSCCCS------------------------------------------------------TTSSSSCEEC
T ss_pred EeECCCCcCCCCCCcC------------------------------------------------------CccccCCeEE
Confidence 9999999977743211 0122456666
Q ss_pred ecCCCCcEEEEEeCCCeeEEEecCCcEEEEEc--CCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCC
Q 012245 207 TLNPGVKITKVAAGGRHTLILSDMGQVWGWGY--GGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSG 284 (467)
Q Consensus 207 ~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~--n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (467)
.++. +|++|+||.+|++||+++|+||+||. |.+||||.+.... ...|.++. ..
T Consensus 124 ~~~~--~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~-~~~p~~~~--~~-------------------- 178 (423)
T 3mvd_K 124 DLPG--KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN-KRTPIDLM--EG-------------------- 178 (423)
T ss_dssp CCSS--CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC-EEEEEESS--TT--------------------
T ss_pred cCCC--CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC-CceeeEec--CC--------------------
Confidence 6543 79999999999999999999999999 9999999976532 24444432 22
Q ss_pred CCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCC-----------CccCceeccccCCccEEEEEeCCCeE
Q 012245 285 KAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTN-----------DQLRPSYASSLMDIQVEQIAAGLWHT 353 (467)
Q Consensus 285 ~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~-----------~~~~p~~v~~~~~~~i~~v~~G~~~~ 353 (467)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+...+|++|+||.+|+
T Consensus 179 ----~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~ 254 (423)
T 3mvd_K 179 ----TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCT 254 (423)
T ss_dssp ----CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEE
T ss_pred ----CcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEE
Confidence 679999999999999999999999999999999997643 45688888877778899999999999
Q ss_pred EEE-EcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 012245 354 VCI-SVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDS 432 (467)
Q Consensus 354 ~al-~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~ 432 (467)
+++ +.+|+||+||.|.+||||.+.......+.+++.+ ..+|++|+||.+|++||+++|+||+||.|.+||||.++.
T Consensus 255 ~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~ 331 (423)
T 3mvd_K 255 FMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDV 331 (423)
T ss_dssp EEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSC
T ss_pred EEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCc
Confidence 999 5899999999999999999665444444444322 458999999999999999999999999999999999987
Q ss_pred CC-cccceEeecCCCceEEEEecCCeEEEEEcCCCC
Q 012245 433 ID-RNIPSLVPIHGFLPRNIACGWWHTLLLAETTQI 467 (467)
Q Consensus 433 ~~-~~~p~~v~~~~~~v~~v~~G~~hs~~l~~~g~i 467 (467)
.+ ...|++++....+|++|+||.+|++||+++|+|
T Consensus 332 ~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v 367 (423)
T 3mvd_K 332 KDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKL 367 (423)
T ss_dssp CSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCE
T ss_pred cccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCE
Confidence 66 457888885544899999999999999999975
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-60 Score=486.00 Aligned_cols=354 Identities=22% Similarity=0.350 Sum_probs=271.6
Q ss_pred CCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCC---CcCcccccCCC--CCCCeeEEecCccEEEEEecCCc
Q 012245 50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGK---HGETPEPFPLP--TEASVVKAAAGWAHCVSVTEAGE 124 (467)
Q Consensus 50 ~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~---~~~~p~~v~~~--~~~~i~~is~G~~h~~aLt~~G~ 124 (467)
..|+...+. +.|+++++++|+||+||.|. .||||.+... ....|.+++.+ ...+|++|+||..|++||+++|+
T Consensus 10 ~~~~~~~~~-~~h~~~~~~~g~v~~wG~n~-~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~ 87 (473)
T 3of7_A 10 SHIINAQED-YKHMYLSVQPLDIFCWGTGS-MCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESN 87 (473)
T ss_dssp TTCCCCGGG-GHHHHCCSSCCEEEEEEECT-TSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCC
T ss_pred hhhhhhccc-ccccccCCCCccEEEEcCCC-CCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCe
Confidence 445566566 66999999999999999998 8999998743 34556666554 56789999999999999999999
Q ss_pred EEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccce
Q 012245 125 VYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPC 204 (467)
Q Consensus 125 v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 204 (467)
||+||.|++||||...... ...+...+..... +............|.
T Consensus 88 v~~wG~n~~GqLG~~~~~~------------------~~~~~~~~~~~~~---------------~~~~~~~~~~~~~P~ 134 (473)
T 3of7_A 88 VWSWGCNDVGALGRDTSNA------------------KEQLKDMDADDSS---------------DDEDGDLNELESTPA 134 (473)
T ss_dssp EEEEECCTTSTTCSCCC------------------------------------------------------CCHHHHSCE
T ss_pred EEEeECCCCCCCCCCCccc------------------ccccccccccccC---------------ccccccccccccCce
Confidence 9999999999887543210 0000000000000 000000011345687
Q ss_pred EEec--C----CCCcEEEEEeCCCeeEEEecCCcEEEEEc--CCCcccCCCCC-CccccCCcccccccccccCCCCccee
Q 012245 205 LVTL--N----PGVKITKVAAGGRHTLILSDMGQVWGWGY--GGEGQLGLGSR-IKMVPTPHLIPCLEHAASGKDRPLLV 275 (467)
Q Consensus 205 ~v~~--~----~~~~i~~Ia~G~~h~~alt~~G~vy~wG~--n~~gqlg~~~~-~~~~~~p~~i~~~~~~~~~~~~~~~~ 275 (467)
++.. . ...+|++|+||.+|++||+++|+||+||. |..||||.... ......|.+++.+..
T Consensus 135 ~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~----------- 203 (473)
T 3of7_A 135 KIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSK----------- 203 (473)
T ss_dssp ECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCS-----------
T ss_pred ecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCC-----------
Confidence 7764 2 35799999999999999999999999998 68899998543 345567877776654
Q ss_pred ecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCC----ccCceeccccCCccEEEEEeCCC
Q 012245 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTND----QLRPSYASSLMDIQVEQIAAGLW 351 (467)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~i~~v~~G~~ 351 (467)
.+|++|+||.+|++||+++|+||+||.|.+||||.+.... ...|..+.. .+|++|+||.+
T Consensus 204 -------------~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~ 267 (473)
T 3of7_A 204 -------------YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGEN 267 (473)
T ss_dssp -------------SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSS
T ss_pred -------------CCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCC
Confidence 6799999999999999999999999999999999986543 456776653 46999999999
Q ss_pred eEEEEEcCCcEEEEeCCCCCcccCCCCCC----CccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCC
Q 012245 352 HTVCISVEGRVYVFGGNQFGQLGTGVDQA----ENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQL 427 (467)
Q Consensus 352 ~~~al~~~g~vy~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gql 427 (467)
|++||+++|+||+||.|.+||||.+.... ...|.+++. +...+|++|+||.+|++||+++|+||+||.|.+|||
T Consensus 268 hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~--~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqL 345 (473)
T 3of7_A 268 HCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL--PDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEV 345 (473)
T ss_dssp EEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC--CTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTT
T ss_pred eEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccc--cCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCcc
Confidence 99999999999999999999999987542 345666653 667799999999999999999999999999999999
Q ss_pred CCCCCC------------CcccceEeecCCC-ceEEEEecCCeEEEEEcCCCC
Q 012245 428 GLGDSI------------DRNIPSLVPIHGF-LPRNIACGWWHTLLLAETTQI 467 (467)
Q Consensus 428 G~g~~~------------~~~~p~~v~~~~~-~v~~v~~G~~hs~~l~~~g~i 467 (467)
|++... ....|.+..+++. +|++|+||.+|++||+++|+|
T Consensus 346 G~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~v 398 (473)
T 3of7_A 346 GIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIA 398 (473)
T ss_dssp CCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCE
T ss_pred CCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcE
Confidence 987531 1112233333333 899999999999999999975
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=5.9e-56 Score=420.14 Aligned_cols=272 Identities=25% Similarity=0.427 Sum_probs=222.9
Q ss_pred eEEEEeecCC-CCCCCCCCCccceecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCccccc
Q 012245 20 TVVYMWGYLP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPF 98 (467)
Q Consensus 20 ~~v~~WG~~~-~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v 98 (467)
.+||+||+|. .+. .|.|++.. .+|++|++|.. |+++|+ +|+||+||.|. .||||. |.+
T Consensus 2 ~~v~~WG~n~~~~~-------~~~p~~~~--~~i~~ia~G~~-h~~~l~-~G~v~~wG~n~-~Gqlg~--------p~~- 60 (282)
T 3qhy_B 2 TSVVAWGGNNDWGE-------ATVPAEAQ--SGVDAIAGGYF-HGLALK-GGKVLGWGANL-NGQLTM--------PAA- 60 (282)
T ss_dssp CEEEEECSCCTTST-------TCCCGGGS--SSCCEEEECSS-EEEEEE-TTEEEEEECCS-SSTTSC--------CGG-
T ss_pred eEEEEeCCCCCcCc-------ccCCcccc--CCCcEEEeCCC-eEEEEE-CCEEEEEeCCC-CCCCCC--------Ccc-
Confidence 4799999873 221 13344333 58999999965 999998 99999999998 899984 222
Q ss_pred CCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceee
Q 012245 99 PLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVK 178 (467)
Q Consensus 99 ~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 178 (467)
...+|++|+||..|+++|+ ||+||+||.|.+||+|.
T Consensus 61 ---~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~---------------------------------------- 96 (282)
T 3qhy_B 61 ---TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV---------------------------------------- 96 (282)
T ss_dssp ---GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC----------------------------------------
T ss_pred ---CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC----------------------------------------
Confidence 2347999999999999996 99999999999986652
Q ss_pred ecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcc
Q 012245 179 RRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHL 258 (467)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~ 258 (467)
|.++ ..+|++|+||.+|+++|+ +|+||+||.|.+|||+... .
T Consensus 97 ------------------------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~---------~ 138 (282)
T 3qhy_B 97 ------------------------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA---------E 138 (282)
T ss_dssp ------------------------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG---------G
T ss_pred ------------------------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc---------c
Confidence 1111 127999999999999999 9999999999999997421 1
Q ss_pred cccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceecccc
Q 012245 259 IPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSL 338 (467)
Q Consensus 259 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~ 338 (467)
. . .+|++|+||.+|+++|+ +|+||+||.|.++|||. |..+
T Consensus 139 ~----~------------------------~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~--- 178 (282)
T 3qhy_B 139 A----Q------------------------SGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA--- 178 (282)
T ss_dssp G----G------------------------SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG---
T ss_pred C----C------------------------CCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec---
Confidence 1 1 56999999999999999 79999999999999983 3333
Q ss_pred CCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEE
Q 012245 339 MDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLS 418 (467)
Q Consensus 339 ~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~ 418 (467)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+.. ...+|++|+||.+|++||+ +|+||+
T Consensus 179 -~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~--------------~~~~v~~i~~G~~h~~al~-~g~v~~ 241 (282)
T 3qhy_B 179 -QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE--------------ALSGVSAIASGEWYSLALK-NGKVIA 241 (282)
T ss_dssp -GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG--------------GGSSCCEEEECSSCEEEEE-TTEEEE
T ss_pred -CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc--------------cCCCceEEEcCCCEEEEEE-CCEEEE
Confidence 24699999999999999 899999999999999985321 1236999999999999999 999999
Q ss_pred EeCCCCCCCCCCCCCCcccceEeecCCCceEEEEecCCeEEEEEcCCC
Q 012245 419 WGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETTQ 466 (467)
Q Consensus 419 wG~n~~gqlG~g~~~~~~~p~~v~~~~~~v~~v~~G~~hs~~l~~~g~ 466 (467)
||.|.++|++.. ..|.+|+||..|++||+++++
T Consensus 242 wG~n~~gq~~v~---------------~~v~~iaaG~~h~~al~~~~~ 274 (282)
T 3qhy_B 242 WGSSRTAPSSVQ---------------SGVSSIEAGPNAAYALKGGSG 274 (282)
T ss_dssp ESTTCCCCGGGS---------------SCEEEEEECSSCEEEEEC---
T ss_pred ecCCCCccccCC---------------CCcEEEEECcCeEEEEecCCC
Confidence 999999998751 269999999999999999875
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.1e-49 Score=375.21 Aligned_cols=237 Identities=28% Similarity=0.465 Sum_probs=194.4
Q ss_pred cEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccc
Q 012245 71 KLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQ 150 (467)
Q Consensus 71 ~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~ 150 (467)
+||+||+|.+.++ .+.|+ +...+|++|+||..|+++|+ +|+||+||.|.+||||..
T Consensus 3 ~v~~WG~n~~~~~----------~~~p~--~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p----------- 58 (282)
T 3qhy_B 3 SVVAWGGNNDWGE----------ATVPA--EAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP----------- 58 (282)
T ss_dssp EEEEECSCCTTST----------TCCCG--GGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-----------
T ss_pred EEEEeCCCCCcCc----------ccCCc--cccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-----------
Confidence 6999999863332 12222 23347999999999999998 999999999999866520
Q ss_pred cCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecC
Q 012245 151 KDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDM 230 (467)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~ 230 (467)
. ....+|++|+||.+|+++|+ +
T Consensus 59 -----------------------------------------------------~----~~~~~i~~ia~G~~hs~~l~-~ 80 (282)
T 3qhy_B 59 -----------------------------------------------------A----ATQSGVDAIAAGNYHSLALK-D 80 (282)
T ss_dssp -----------------------------------------------------G----GGGSCCCEEEECSSEEEEEE-T
T ss_pred -----------------------------------------------------c----cCCCCEEEEEeCCCEEEEEE-C
Confidence 0 01127999999999999996 9
Q ss_pred CcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcE
Q 012245 231 GQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGAL 310 (467)
Q Consensus 231 G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v 310 (467)
|+||+||.|.+||||. |.++. .+|++|+||.+|+++|+ +|+|
T Consensus 81 G~v~~wG~n~~Gqlg~---------P~~~~----------------------------~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 81 GEVIAWGGNEDGQTTV---------PAEAR----------------------------SGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp TEEEEEECCTTSTTCC---------CGGGS----------------------------SSEEEEEEETTEEEEEE-TTEE
T ss_pred CEEEEeeCCCCCCCCC---------CcccC----------------------------CCeEEEECcCCEEEEEe-CCeE
Confidence 9999999999999985 33332 46999999999999999 9999
Q ss_pred EEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecC
Q 012245 311 LTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETP 390 (467)
Q Consensus 311 ~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 390 (467)
|+||.|.++|||. |. + ...+|++|+||.+|+++|+ +|+||+||.|.++|||. |..
T Consensus 123 ~~wG~n~~gqlg~--------~~--~--~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~---- 177 (282)
T 3qhy_B 123 IAWGDDSDGQTTV--------PA--E--AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAE---- 177 (282)
T ss_dssp EEEECCTTSTTSC--------CG--G--GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGG----
T ss_pred EEecCCCCCcCCC--------Cc--c--CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------cee----
Confidence 9999999999974 21 1 1236999999999999999 89999999999999973 222
Q ss_pred ccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEeecCCCceEEEEecCCeEEEEEcCCCC
Q 012245 391 ILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETTQI 467 (467)
Q Consensus 391 ~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~v~~v~~G~~hs~~l~~~g~i 467 (467)
...+|++|+||.+|++|| ++|+||+||.|.+||||.+.. . ..+|++|+||..|+++|+ +|+|
T Consensus 178 --~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~----------~-~~~v~~i~~G~~h~~al~-~g~v 239 (282)
T 3qhy_B 178 --AQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE----------A-LSGVSAIASGEWYSLALK-NGKV 239 (282)
T ss_dssp --GGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG----------G-GSSCCEEEECSSCEEEEE-TTEE
T ss_pred --cCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc----------c-CCCceEEEcCCCEEEEEE-CCEE
Confidence 234799999999999999 899999999999999986321 1 137999999999999999 8864
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.95 E-value=0.33 Score=47.40 Aligned_cols=271 Identities=9% Similarity=0.032 Sum_probs=144.4
Q ss_pred chhhceeeeeEEEEeecCCCCCCCCCCCccceecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCC
Q 012245 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGK 90 (467)
Q Consensus 11 ~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~ 90 (467)
..++....++.|.+|-...+. +...-......|..++..+. +.+.-..||.|..|-... +..
T Consensus 144 ~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~-~l~sg~~dg~i~vwd~~~--~~~------ 205 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDKNTLE---------CKRILTGHTGSVLCLQYDER-VIITGSSDSTVRVWDVNT--GEM------ 205 (435)
T ss_dssp SEEEEEESSSCEEEEESSSCC---------EEEEECCCSSCEEEEECCSS-EEEEEETTSCEEEEESSS--CCE------
T ss_pred CEEEEEeCCCeEEEEeCCCCe---------EEEEEcCCCCcEEEEEECCC-EEEEEcCCCeEEEEECCC--CcE------
Confidence 344455666777777542111 11111112345666666433 555557899999996543 221
Q ss_pred CcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCc
Q 012245 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170 (467)
Q Consensus 91 ~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (467)
...+. .....|..++......+.-..||.|..|-.....
T Consensus 206 ----~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~------------------------------------ 244 (435)
T 1p22_A 206 ----LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT------------------------------------ 244 (435)
T ss_dssp ----EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS------------------------------------
T ss_pred ----EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC------------------------------------
Confidence 01111 1224578888877888888999999999742210
Q ss_pred ccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCC
Q 012245 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI 250 (467)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~ 250 (467)
...+..........|..++....+.++-..+|.|..|-....-.
T Consensus 245 -----------------------------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------- 288 (435)
T 1p22_A 245 -----------------------------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF------- 288 (435)
T ss_dssp -----------------------------CCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE-------
T ss_pred -----------------------------CceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE-------
Confidence 00000111112236777777777777778899999996532110
Q ss_pred ccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCcc
Q 012245 251 KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQL 330 (467)
Q Consensus 251 ~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~ 330 (467)
+..+.. ....|..++......+.-..+|.|..|-......
T Consensus 289 --------~~~~~~----------------------~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---------- 328 (435)
T 1p22_A 289 --------VRTLNG----------------------HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC---------- 328 (435)
T ss_dssp --------EEEEEC----------------------CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE----------
T ss_pred --------EEEEcC----------------------CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE----------
Confidence 111110 0034666666667777778899999996432110
Q ss_pred CceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEE
Q 012245 331 RPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVL 410 (467)
Q Consensus 331 ~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al 410 (467)
...+. .....|..++....+.+.-..||.|..|-....... ............ ......|..++....+.+.-
T Consensus 329 -~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~ 401 (435)
T 1p22_A 329 -LRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP----RAPAGTLCLRTL-VEHSGRVFRLQFDEFQIVSS 401 (435)
T ss_dssp -EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTST----TSCTTTTEEEEE-CCCSSCCCCEEECSSCEEEC
T ss_pred -EEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCc----cccccchheeec-cCCCCCeEEEEeCCCEEEEE
Confidence 01111 122356777765556566677999999974221100 000000011111 12233577777766666667
Q ss_pred eCCCcEEEEeCCC
Q 012245 411 TEDGQVLSWGWNK 423 (467)
Q Consensus 411 ~~~G~vy~wG~n~ 423 (467)
..||.|..|-...
T Consensus 402 s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 402 SHDDTILIWDFLN 414 (435)
T ss_dssp CSSSEEEEEC---
T ss_pred eCCCEEEEEECCC
Confidence 7899999996654
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.35 E-value=0.0065 Score=53.62 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=59.4
Q ss_pred cEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEE
Q 012245 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292 (467)
Q Consensus 213 ~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 292 (467)
.|.+|+--..|..++--+++++.+|+++.||+-..... .++.
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------------------------------gPfl 351 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------------------------------GPYI 351 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------------------------------CCEE
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------------------------------chHH
Confidence 68888888999999999999999999999998654421 4589
Q ss_pred EEeecCceEEEEecCCcEEEEeeCCCCc
Q 012245 293 EIACGGRHSAVVTDAGALLTFGWGLYGQ 320 (467)
Q Consensus 293 ~ia~G~~~s~~lt~~g~v~~wG~n~~gq 320 (467)
++.+|.++++-+..-+.+-.||+....-
T Consensus 352 a~~AG~~fTVTVn~~nyv~FWGDSPDNS 379 (400)
T 4gbf_A 352 QLAAGHNFTVTVNTLNQVMFWGDSPDNS 379 (400)
T ss_dssp EEEECSSEEEEEETTCCEEEEECCTTST
T ss_pred hHhccCCeEEEEeceeeEEEecCCCCcc
Confidence 9999999999999999999999865443
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.98 E-value=1.3 Score=43.11 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=143.9
Q ss_pred chhhceeeeeEEEEeecCCCCCCCCCCCccceecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCC
Q 012245 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGK 90 (467)
Q Consensus 11 ~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~ 90 (467)
..++-...++.|.+|--..+. +...-..-...|..+...+. +.+.-..||.|..|-... +..
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~--~~~------ 191 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTGK---------CLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAET--GEC------ 191 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCC---------EEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTT--TEE------
T ss_pred CEEEEEECCCcEEEEECCCCc---------EEEEEcCCCCCEEEEEecCC-EEEEEeCCCeEEEEECCc--CcE------
Confidence 334445566777777653211 11100111334555544433 555557789999996542 211
Q ss_pred CcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCc
Q 012245 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170 (467)
Q Consensus 91 ~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (467)
...+. .....|..++......+.-..||.|..|-.....
T Consensus 192 ----~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------------------------------ 230 (445)
T 2ovr_B 192 ----IHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ------------------------------------ 230 (445)
T ss_dssp ----EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC------------------------------------
T ss_pred ----EEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc------------------------------------
Confidence 01111 1123577777777788888899999999742210
Q ss_pred ccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCC
Q 012245 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI 250 (467)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~ 250 (467)
+..........|..++......++-..+|.|+.|-....-
T Consensus 231 --------------------------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------- 270 (445)
T 2ovr_B 231 --------------------------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-------- 270 (445)
T ss_dssp --------------------------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE--------
T ss_pred --------------------------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc--------
Confidence 0000001122577777766677777889999999643210
Q ss_pred ccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCcc
Q 012245 251 KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQL 330 (467)
Q Consensus 251 ~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~ 330 (467)
.+..+.. ....|..++....+.+.-..+|.|..|-......+
T Consensus 271 -------~~~~~~~----------------------~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------- 312 (445)
T 2ovr_B 271 -------CLHTLQG----------------------HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI--------- 312 (445)
T ss_dssp -------EEEEECC----------------------CSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE---------
T ss_pred -------EeEEecC----------------------CCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE---------
Confidence 1111100 00346667766677777788999999964321110
Q ss_pred CceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEE
Q 012245 331 RPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVL 410 (467)
Q Consensus 331 ~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al 410 (467)
..+. .....+..+.......+.-..||.|..|-....- ....+..+......|..++....+.++-
T Consensus 313 --~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 378 (445)
T 2ovr_B 313 --HTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITS 378 (445)
T ss_dssp --EEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEE
T ss_pred --EEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEE
Confidence 1111 1122455555555666666789999999753211 1111221111334688888877887888
Q ss_pred eCCCcEEEEeCCC
Q 012245 411 TEDGQVLSWGWNK 423 (467)
Q Consensus 411 ~~~G~vy~wG~n~ 423 (467)
..||.|..|-...
T Consensus 379 ~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 379 SDDGTVKLWDLKT 391 (445)
T ss_dssp ETTSEEEEEETTT
T ss_pred eCCCeEEEEECCC
Confidence 8999999997644
No 16
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.96 E-value=0.019 Score=50.70 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=57.9
Q ss_pred ccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCC
Q 012245 289 SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGN 368 (467)
Q Consensus 289 ~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n 368 (467)
..|..|+.-..|..++--+++++.+|+++.||+-... -. .+..++.+|.++++-+..-+.+-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~------------ta-gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD------------HA-GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG------------GG-CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC------------Cc-chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 5688899999999999999999999999999974321 11 2689999999999999999999999965
Q ss_pred CCC
Q 012245 369 QFG 371 (467)
Q Consensus 369 ~~g 371 (467)
...
T Consensus 376 PDN 378 (400)
T 4gbf_A 376 PDN 378 (400)
T ss_dssp TTS
T ss_pred CCc
Confidence 433
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.86 E-value=1.4 Score=42.68 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=88.7
Q ss_pred cEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEE
Q 012245 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292 (467)
Q Consensus 213 ~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 292 (467)
.|..++......+.-..+|.|..|-......+ .....+.. ....|.
T Consensus 215 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~------------~~~~~~~~----------------------~~~~v~ 260 (435)
T 1p22_A 215 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI------------TLRRVLVG----------------------HRAAVN 260 (435)
T ss_dssp CEEEEECCTTEEEEEETTSCEEEEECSSSSCC------------EEEEEECC----------------------CSSCEE
T ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc------------eeeeEecC----------------------CCCcEE
Confidence 57778777777777789999999965322100 00000000 013466
Q ss_pred EEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCc
Q 012245 293 EIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQ 372 (467)
Q Consensus 293 ~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gq 372 (467)
.++....+.+.-..+|.|..|-...... ...+.. ....|..++......+.-..||.|..|-....-.
T Consensus 261 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 328 (435)
T 1p22_A 261 VVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC 328 (435)
T ss_dssp EEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE
Confidence 6776677777778899999996432110 111111 1224666666556666677899999997543110
Q ss_pred ccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeC
Q 012245 373 LGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 373 lG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~ 421 (467)
...+. .....|..++....+.+.-..||.|..|-.
T Consensus 329 -----------~~~~~---~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 329 -----------LRVLE---GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp -----------EEEEC---CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred -----------EEEEe---CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 11111 123457888887777777889999999975
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.60 E-value=3.5 Score=39.90 Aligned_cols=148 Identities=10% Similarity=-0.033 Sum_probs=87.9
Q ss_pred cEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEE
Q 012245 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292 (467)
Q Consensus 213 ~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 292 (467)
.|..++......++-..+|.|+.|-....-. +..+.. ....|.
T Consensus 201 ~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---------------~~~~~~----------------------~~~~v~ 243 (445)
T 2ovr_B 201 TVRCMHLHEKRVVSGSRDATLRVWDIETGQC---------------LHVLMG----------------------HVAAVR 243 (445)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEESSSCCE---------------EEEEEC----------------------CSSCEE
T ss_pred cEEEEEecCCEEEEEeCCCEEEEEECCCCcE---------------EEEEcC----------------------CcccEE
Confidence 5777777677777778899999996542110 100000 003456
Q ss_pred EEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCc
Q 012245 293 EIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQ 372 (467)
Q Consensus 293 ~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gq 372 (467)
.++......+.-..+|.|..|-...... ...+. .....|..+.....+.+.-..||.|+.|-......
T Consensus 244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 244 CVQYDGRRVVSGAYDFMVKVWDPETETC-----------LHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 311 (445)
T ss_dssp EEEECSSCEEEEETTSCEEEEEGGGTEE-----------EEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEECCCEEEEEcCCCEEEEEECCCCcE-----------eEEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE
Confidence 6666666777777889999986432100 01111 11235777776556666667899999997543111
Q ss_pred ccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCC
Q 012245 373 LGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 373 lG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~ 423 (467)
...+. .....+..++......++-..||.|+.|-...
T Consensus 312 -----------~~~~~---~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 312 -----------IHTLT---GHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp -----------EEEEC---CCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred -----------EEEEc---CCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 01111 12335677777777777788999999997643
No 19
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.30 E-value=2.9 Score=37.73 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=54.4
Q ss_pred EEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCC-eEEEEEcCCcEEEEeCCCCCcccCCCCC
Q 012245 301 SAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLW-HTVCISVEGRVYVFGGNQFGQLGTGVDQ 379 (467)
Q Consensus 301 s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-~~~al~~~g~vy~wG~n~~gqlG~~~~~ 379 (467)
.++-..+|.|+.|-...... ...+. .....|..++...+ ..++...+|.|+.|-....
T Consensus 198 ~~~~~~dg~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------- 256 (313)
T 3odt_A 198 FISCSNDGLIKLVDMHTGDV-----------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG--------- 256 (313)
T ss_dssp EEEEETTSEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---------
T ss_pred EEEccCCCeEEEEECCchhh-----------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---------
Confidence 55567788898886432111 11111 12235666665533 4555667899999964321
Q ss_pred CCccceeeecCccCCCceEEEEecCC-eEEEEeCCCcEEEEeCCC
Q 012245 380 AENVPKLLETPILESKRAKVVSCGAR-HSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 380 ~~~~p~~v~~~~~~~~~i~~i~~G~~-h~~al~~~G~vy~wG~n~ 423 (467)
.....+. .....|..++.... ..++-..||.|+.|=...
T Consensus 257 --~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 257 --SLKQVIT---LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp --CEEEEEE---CSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred --ceeEEEe---ccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 1111222 22336777776433 456678899999996644
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.91 E-value=9.7 Score=39.30 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=38.3
Q ss_pred CeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEE----ecCCeEEE-EeCCCcEEEEeCCCCC
Q 012245 351 WHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVS----CGARHSAV-LTEDGQVLSWGWNKYG 425 (467)
Q Consensus 351 ~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~----~G~~h~~a-l~~~G~vy~wG~n~~g 425 (467)
.|++++..+|+||+.|-...+. +.+.......+.... ....+...+. .=..|+++ +..+|+||+.|-+.++
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~-~~~~~~~~~~v~~yd---p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGI-PFEDSTPVFTPEIYV---PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCC-TTCCCSBCCCCEEEE---GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred cCCeEECCCCCEEEECCcccCc-CcCCCCcccceEEEc---CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 5777777799999999544332 111111122222222 1122233322 12457654 5689999999997654
No 21
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.76 E-value=8.1 Score=40.32 Aligned_cols=17 Identities=29% Similarity=0.153 Sum_probs=11.7
Q ss_pred CeEEEEeCCCcEEEEeC
Q 012245 405 RHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 405 ~h~~al~~~G~vy~wG~ 421 (467)
.|+++...+|+||+.|=
T Consensus 657 gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp SCEEECC---CEEEECC
T ss_pred eeeEEEeCCCEEEEEeC
Confidence 48888888889999986
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=90.98 E-value=8.9 Score=34.77 Aligned_cols=108 Identities=11% Similarity=0.060 Sum_probs=52.3
Q ss_pred hceeeeeEEEEeecCCCCCCCCCCCccceecc-cCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCc
Q 012245 14 MEECKETVVYMWGYLPGTSPEKSPILSPIPAR-LCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHG 92 (467)
Q Consensus 14 ~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~-~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~ 92 (467)
++..+++++++.+...+..-.........++. ..-...|..++....+..++...+|.|..|-... ....
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~-~~~~-------- 85 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISH-PGNK-------- 85 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTS-TTCC--------
T ss_pred EEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCC-CCce--------
Confidence 56778888888877532221111111112222 2224556666544343344455588888886543 1110
Q ss_pred CcccccC-CCCCCCeeEEecC--ccEEEEEecCCcEEEeeC
Q 012245 93 ETPEPFP-LPTEASVVKAAAG--WAHCVSVTEAGEVYTWGW 130 (467)
Q Consensus 93 ~~p~~v~-~~~~~~i~~is~G--~~h~~aLt~~G~v~~wG~ 130 (467)
.....+. ......|..++.. ....++-..+|.|+.|-.
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 0000000 0122345555443 345556677889999863
No 23
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.52 E-value=14 Score=33.50 Aligned_cols=214 Identities=13% Similarity=0.081 Sum_probs=113.0
Q ss_pred CCCCceeeecCCc-ceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEec---CccEEEEEecCC
Q 012245 48 GGDSWKDVCGGGC-GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA---GWAHCVSVTEAG 123 (467)
Q Consensus 48 ~~~~i~~v~~g~~-~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~---G~~h~~aLt~~G 123 (467)
.+..+..+..... .+.+++|++|++|.---.. +...... -+ +..+.+|+.+.+ .....+.+|++|
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~----lp~~~~~------~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ----ALQGSKV------SL-KSREEKIVGAFIREKFGNRLLLATKKG 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH----HHTSEEC------CC-SSTTCCEEEEEEGGGSCSEEEEEETTS
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh----CccCccc------cc-CCCCCEEEEEECCcCCCCEEEEEeCCC
Confidence 3455555433322 2567889999999754322 1100000 04 556788888876 225788899999
Q ss_pred cEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccc
Q 012245 124 EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSP 203 (467)
Q Consensus 124 ~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (467)
.+.-.-..++-+ ++ .-.
T Consensus 91 ~iKr~~l~~~~~----------------------------------~~-----------------------------~G~ 107 (276)
T 3no0_A 91 YVKKIPLAEFEY----------------------------------KA-----------------------------QGM 107 (276)
T ss_dssp EEEEEEGGGTTT----------------------------------CS-----------------------------TTE
T ss_pred EEEEEEHHHhhh----------------------------------hc-----------------------------CCe
Confidence 888765333200 00 000
Q ss_pred eEEecCCCCcEEEEEe--CCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCccc
Q 012245 204 CLVTLNPGVKITKVAA--GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVN 281 (467)
Q Consensus 204 ~~v~~~~~~~i~~Ia~--G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 281 (467)
.-+.+.++..++.+.. +..+.+++|++|++|.+-..+.-.+|....-.. .+. +.
T Consensus 108 ~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~-----~i~-L~------------------ 163 (276)
T 3no0_A 108 PIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ-----GIK-LE------------------ 163 (276)
T ss_dssp ECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-----CCC-CC------------------
T ss_pred EEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-----EEc-cC------------------
Confidence 1122233334554433 455688899999999997655444433221000 011 11
Q ss_pred CCCCCCCccEEEEeec--CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEE--eCCCeEEEEE
Q 012245 282 SSGKAGRSYVKEIACG--GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIA--AGLWHTVCIS 357 (467)
Q Consensus 282 ~~~~~~~~~i~~ia~G--~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~--~G~~~~~al~ 357 (467)
...+|+.+..- ..+.+++|++|.+.-.--.++-..+.+...... + ..+.+++.+. .+....++++
T Consensus 164 -----~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~----i--~~~~~lv~~~~~~~~~~i~~~t 232 (276)
T 3no0_A 164 -----KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEV----S--GTKDTLVDLIPIKEEVELLITT 232 (276)
T ss_dssp -----TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEEC----C--CSSSCEEEEEEESSEEEEEEEE
T ss_pred -----CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEE----E--cCCCcEEEEEEeCCCCEEEEEc
Confidence 11445554433 357788899998877765444322211100000 0 1223454442 3456788899
Q ss_pred cCCcEEE--EeCCCC
Q 012245 358 VEGRVYV--FGGNQF 370 (467)
Q Consensus 358 ~~g~vy~--wG~n~~ 370 (467)
++|++.- +-..+-
T Consensus 233 ~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 233 KNGKAFYDKINQKDI 247 (276)
T ss_dssp TTSCEEEEEEEGGGS
T ss_pred CCCeEEEeeeCHHHC
Confidence 9999988 754443
No 24
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=88.14 E-value=18 Score=34.24 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=58.6
Q ss_pred cchhhceeeeeEEEEeecCCCCCCCCCCCccceecccCCCCCceeeecCCcc-eeEEEecCCcEEEecCCCCCCCccccC
Q 012245 10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTS 88 (467)
Q Consensus 10 ~~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~-~~~~l~~~G~vy~wG~~~~~g~lg~~~ 88 (467)
...++....++.|++|-...+.. ...........|..++....+ +.+.-..+|.|..|-... +.
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~--------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~----- 167 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSV--------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES--QT----- 167 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCE--------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--CC-----
T ss_pred CCCEEEEECCCeEEEeeCCCCcE--------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC--Ce-----
Confidence 45677888999999997643221 111222123445555433222 444446788888886543 11
Q ss_pred CCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeC
Q 012245 89 GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (467)
Q Consensus 89 ~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~ 130 (467)
....+. .....|..++......+.-..+|.|+.|-.
T Consensus 168 -----~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 168 -----KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp -----EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred -----EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEec
Confidence 011111 123457778777777888888999999974
No 25
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=86.55 E-value=17 Score=32.37 Aligned_cols=144 Identities=12% Similarity=0.012 Sum_probs=76.6
Q ss_pred cEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEE
Q 012245 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292 (467)
Q Consensus 213 ~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 292 (467)
.|..++......++...+|.|+.|-.. + .+..+.. ....+.
T Consensus 106 ~i~~~~~~~~~l~~~~~d~~i~~~d~~---~--------------~~~~~~~----------------------~~~~v~ 146 (313)
T 3odt_A 106 NVCSLSFQDGVVISGSWDKTAKVWKEG---S--------------LVYNLQA----------------------HNASVW 146 (313)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETT---E--------------EEEEEEC----------------------CSSCEE
T ss_pred CEEEEEecCCEEEEEeCCCCEEEEcCC---c--------------EEEeccc----------------------CCCcee
Confidence 577777766777777889999999511 0 0000000 002233
Q ss_pred EEee---cCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC-CeEEEEEcCCcEEEEeCC
Q 012245 293 EIAC---GGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL-WHTVCISVEGRVYVFGGN 368 (467)
Q Consensus 293 ~ia~---G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~-~~~~al~~~g~vy~wG~n 368 (467)
.++. .....+.-..+|.|..|-... ....+.......|..++.-. ...++-..+|.|+.|-..
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~ 213 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH 213 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTE-------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCc-------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC
Confidence 3332 455666677889999985110 00111111222344444432 234556678899999754
Q ss_pred CCCcccCCCCCCCccceeeecCccCCCceEEEEecCC-eEEEEeCCCcEEEEeCC
Q 012245 369 QFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGAR-HSAVLTEDGQVLSWGWN 422 (467)
Q Consensus 369 ~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~-h~~al~~~G~vy~wG~n 422 (467)
.... ...+. .....|..++.... ..++...+|.|+.|-..
T Consensus 214 ~~~~-----------~~~~~---~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 214 TGDV-----------LRTYE---GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp TCCE-----------EEEEE---CCSSCEEEEEECTTSCEEEEETTSEEEEECTT
T ss_pred chhh-----------hhhhh---cCCceEEEEEEecCCCEEEEecCCEEEEEECC
Confidence 3111 11111 12345777776544 55666789999999543
No 26
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=86.46 E-value=19 Score=32.87 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=38.5
Q ss_pred CCCceeeecC-----CcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccC-CCCCCCeeEEecCcc------EE
Q 012245 49 GDSWKDVCGG-----GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP-LPTEASVVKAAAGWA------HC 116 (467)
Q Consensus 49 ~~~i~~v~~g-----~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~-~~~~~~i~~is~G~~------h~ 116 (467)
...|..++.. +....++...+|.|..|-... ...+. ...... ......|..++.... ..
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~-~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS-QGEIR--------LLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG-GGCEE--------EEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC-CcEEE--------eeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 3456666544 233566667788888886543 11110 000000 011234555554333 56
Q ss_pred EEEecCCcEEEeeC
Q 012245 117 VSVTEAGEVYTWGW 130 (467)
Q Consensus 117 ~aLt~~G~v~~wG~ 130 (467)
++-..||.|..|-.
T Consensus 89 ~~~~~dg~i~v~d~ 102 (366)
T 3k26_A 89 AVAGSRGIIRIINP 102 (366)
T ss_dssp EEEETTCEEEEECT
T ss_pred EEecCCCEEEEEEc
Confidence 66678899999963
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.09 E-value=46 Score=36.87 Aligned_cols=111 Identities=14% Similarity=-0.010 Sum_probs=52.7
Q ss_pred EEEEeec--CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceecc---ccCCccEEEEEeCCCeEEEEEcCCcEEEE
Q 012245 291 VKEIACG--GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYAS---SLMDIQVEQIAAGLWHTVCISVEGRVYVF 365 (467)
Q Consensus 291 i~~ia~G--~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~---~~~~~~i~~v~~G~~~~~al~~~g~vy~w 365 (467)
|..++.. ....+.-..+|.|+.|-......+. ...|.... ......|..++...+..+++..+|.|..|
T Consensus 1130 v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vw 1203 (1249)
T 3sfz_A 1130 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWW 1203 (1249)
T ss_dssp EEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEB
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------EeccccccccccccCceEEEEEECCCCCEEEECCCeEEEE
Confidence 4444443 3344445678888888643211111 11111110 11122455666555544455556888888
Q ss_pred eCCCCCcccCCCCCCCccceeeecCccCCCceEE--EEecCCeEEEEeCCCcEEEEeC
Q 012245 366 GGNQFGQLGTGVDQAENVPKLLETPILESKRAKV--VSCGARHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 366 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~--i~~G~~h~~al~~~G~vy~wG~ 421 (467)
--.....+.. +. .....|.. ++......++...+|.|+.|-.
T Consensus 1204 d~~~g~~~~~-----------~~---~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1204 NVATGDSSQT-----------FY---TNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CSSSCBCCCC-----------CC---CSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred ECCCCceeee-----------ee---ccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 6443211110 00 01122333 3333446667788999999943
No 28
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.79 E-value=36 Score=35.35 Aligned_cols=18 Identities=11% Similarity=-0.045 Sum_probs=14.3
Q ss_pred CCeEEEEeCCCcEEEEeC
Q 012245 404 ARHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 404 ~~h~~al~~~G~vy~wG~ 421 (467)
..|++++..+++||+.|=
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 467777777699999985
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=80.44 E-value=32 Score=30.84 Aligned_cols=95 Identities=8% Similarity=-0.063 Sum_probs=50.0
Q ss_pred CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC--CeEEEEEcCCcEEEEeCCCCCcccC
Q 012245 298 GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL--WHTVCISVEGRVYVFGGNQFGQLGT 375 (467)
Q Consensus 298 ~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~al~~~g~vy~wG~n~~gqlG~ 375 (467)
..+.++-..+|.|+.|-..... ...+.. ....|..++... .+.+....+|.|+.|-......+
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-- 300 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPD------------KYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-- 300 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSC------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--
T ss_pred CCEEEEEcCCCcEEEEECCCCC------------eEEEcC-CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--
Confidence 3445555677888888543211 111111 122466666553 33444567889999975431111
Q ss_pred CCCCCCccceeeecCccCCCceEEEEec--CCeEEEEeCCCcEEEEe
Q 012245 376 GVDQAENVPKLLETPILESKRAKVVSCG--ARHSAVLTEDGQVLSWG 420 (467)
Q Consensus 376 ~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~h~~al~~~G~vy~wG 420 (467)
... .....|..++.. ..+.++-..+|.|+.|-
T Consensus 301 ---------~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 301 ---------FQS----KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ---------EEE----ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ---------EEe----cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 111 123356666554 34555567888888883
No 30
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=80.08 E-value=60 Score=33.74 Aligned_cols=108 Identities=11% Similarity=-0.017 Sum_probs=53.6
Q ss_pred EEEEeec---CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEe----CCCeEEEEEcCCcEE
Q 012245 291 VKEIACG---GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAA----GLWHTVCISVEGRVY 363 (467)
Q Consensus 291 i~~ia~G---~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~----G~~~~~al~~~g~vy 363 (467)
|..++.. ....+.-..+|.|..|-..... ....+.......+..++. .....++-..+|.|+
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 5555543 3345555678999999642210 011111111112333332 233444455788899
Q ss_pred EEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCC--eEEEEeCCCcEEEEeCCC
Q 012245 364 VFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGAR--HSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 364 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--h~~al~~~G~vy~wG~n~ 423 (467)
.|-.... .....+. .....|..++.... ..++-..+|.|+.|-...
T Consensus 212 ~~d~~~~-----------~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 212 IWDYQTK-----------SCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEETTTT-----------EEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEECCCC-----------cEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 9964321 1111121 12335666665543 455567789999996654
No 31
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=76.01 E-value=46 Score=30.19 Aligned_cols=111 Identities=13% Similarity=-0.039 Sum_probs=57.4
Q ss_pred cEEEEee--c--CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEE
Q 012245 290 YVKEIAC--G--GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVF 365 (467)
Q Consensus 290 ~i~~ia~--G--~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~w 365 (467)
.|..++. . ..+.+.-..+|.|+.|-..... ....+.. ...+..+..-....++...++.++.|
T Consensus 129 ~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~ 195 (368)
T 3mmy_A 129 PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-----------PMMVLQL--PERCYCADVIYPMAVVATAERGLIVY 195 (368)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----------CSEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEE
T ss_pred ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----------EEEEEec--CCCceEEEecCCeeEEEeCCCcEEEE
Confidence 3555553 2 2334445678889998533210 0111111 11355555556677778888999999
Q ss_pred eCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCe----EEEEeCCCcEEEEeCCC
Q 012245 366 GGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARH----SAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 366 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h----~~al~~~G~vy~wG~n~ 423 (467)
-...... ....+..+......+..+...... .++-..+|.|..|-...
T Consensus 196 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 196 QLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp ECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred Eeccccc----------hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 7543111 011111111112234444444433 66678899999997654
No 32
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.95 E-value=56 Score=30.65 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=34.0
Q ss_pred eeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEec--CccEEEEEecCCcEEEeeC
Q 012245 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA--GWAHCVSVTEAGEVYTWGW 130 (467)
Q Consensus 62 ~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~--G~~h~~aLt~~G~v~~wG~ 130 (467)
+.++...+|.|+.|-... +.. ...+.......|..|+. ...+.++-..+|.|..|-.
T Consensus 105 ~l~~~~~d~~v~lw~~~~--~~~----------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 105 NVVAVALERNVYVWNADS--GSV----------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp SEEEEEETTEEEEEETTT--CCE----------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CEEEEECCCeEEEeeCCC--CcE----------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 566778899999997643 221 11111112234555554 3456666778899999974
No 33
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.80 E-value=51 Score=29.69 Aligned_cols=124 Identities=14% Similarity=0.051 Sum_probs=71.0
Q ss_pred ccEEEEee---cCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEe--CCCeEEEEEcCCcEE
Q 012245 289 SYVKEIAC---GGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAA--GLWHTVCISVEGRVY 363 (467)
Q Consensus 289 ~~i~~ia~---G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~~~al~~~g~vy 363 (467)
.+|+.+.+ ...+.+++|++|.+.-.--.++.+- ..-...+..-++..++.+.. +..+.++++++|++|
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~-------~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~ 140 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK-------AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVA 140 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC-------STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEE
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh-------cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEE
Confidence 66777765 2357888999998887764443210 01112222223445555543 445688899999999
Q ss_pred EEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEec--CCeEEEEeCCCcEEEEeCCCCC
Q 012245 364 VFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCG--ARHSAVLTEDGQVLSWGWNKYG 425 (467)
Q Consensus 364 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~h~~al~~~G~vy~wG~n~~g 425 (467)
.+-...--.+|....- .+ .+.+ .++.+|+.+... ..+.+++|++|.+.-.=..++-
T Consensus 141 r~~~~eip~~gR~a~G---v~-~i~L--~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~ 198 (276)
T 3no0_A 141 RFSVREVPPSTPGARG---VQ-GIKL--EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIP 198 (276)
T ss_dssp EEEGGGSCBCCTTCCC---EE-CCCC--CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSC
T ss_pred EEEhhhCCCcCCCCCC---EE-EEcc--CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcc
Confidence 9975543333322110 11 1222 334577776544 3467778999988877655543
No 34
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=73.35 E-value=52 Score=29.56 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=12.0
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 012245 350 LWHTVCISVEGRVYVFGG 367 (467)
Q Consensus 350 ~~~~~al~~~g~vy~wG~ 367 (467)
..|++++. ++++|++|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 35665554 789999984
No 35
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=73.15 E-value=65 Score=30.62 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=55.0
Q ss_pred EEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCC---eEEEEEcCCcEEEEeCCCCCcccCCC
Q 012245 301 SAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLW---HTVCISVEGRVYVFGGNQFGQLGTGV 377 (467)
Q Consensus 301 s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~---~~~al~~~g~vy~wG~n~~gqlG~~~ 377 (467)
.+.-..+|.|..|-.....+ |..........|..++...+ ..+.-..+|.|..|-....+..-...
T Consensus 293 l~tg~~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 293 LATGSADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEEETTSEEEEEETTCTTS-----------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEEeCCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 33445778888887543211 11111112235666666432 23344568899999754422110000
Q ss_pred CCCCccceeeecCccCCCceEEEEecCC---eEEEEeCCCcEEEEeCCC
Q 012245 378 DQAENVPKLLETPILESKRAKVVSCGAR---HSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 378 ~~~~~~p~~v~~~~~~~~~i~~i~~G~~---h~~al~~~G~vy~wG~n~ 423 (467)
......|..+.........|..++.... ..+....+|.|..|-...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 0000112333221122335777776544 455567889999996543
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=70.56 E-value=62 Score=29.27 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=19.4
Q ss_pred CceEEEEecC--CeEEEEeCCCcEEEEeCCC
Q 012245 395 KRAKVVSCGA--RHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 395 ~~i~~i~~G~--~h~~al~~~G~vy~wG~n~ 423 (467)
..|..++... ...+....||.|+.|-...
T Consensus 316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 4577777653 3555567899999996543
No 37
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=70.05 E-value=68 Score=29.55 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=58.8
Q ss_pred ccEEEEeec--CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEe
Q 012245 289 SYVKEIACG--GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFG 366 (467)
Q Consensus 289 ~~i~~ia~G--~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG 366 (467)
..|..++.. ..+.+....+|.|..|-......+-... ............+..........++...++.|+.|-
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY-----GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC-----CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc-----ccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 446555554 3456666788999999754322110000 000000011111222222344555667789999997
Q ss_pred CCCCCcccCCCCCCCccceeeecCccCCCceEEEEecC--CeEEEEeCCCcEEEEeCCCCCCC
Q 012245 367 GNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGA--RHSAVLTEDGQVLSWGWNKYGQL 427 (467)
Q Consensus 367 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~h~~al~~~G~vy~wG~n~~gql 427 (467)
....-.+ ..+. .....|..++... .+.+.-..||.|+.|=.....++
T Consensus 321 ~~~~~~~-----------~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 321 VYSGEQI-----------TMLK---GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TTTCCEE-----------EEEC---CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred CcCCcce-----------eeec---cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 5431111 1111 1223566666553 44555678999999977665443
No 38
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=69.42 E-value=79 Score=30.08 Aligned_cols=149 Identities=8% Similarity=0.017 Sum_probs=82.7
Q ss_pred CcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccE
Q 012245 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYV 291 (467)
Q Consensus 212 ~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 291 (467)
..|..++......++-..+|.|+.|-...... +..+.. ....|
T Consensus 271 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~---------------~~~~~~----------------------~~~~v 313 (464)
T 3v7d_B 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC---------------LYILSG----------------------HTDRI 313 (464)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEE---------------EEEECC----------------------CSSCE
T ss_pred ceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------EEEecC----------------------CCCCE
Confidence 36778877777778888999999997542211 100000 00234
Q ss_pred EEEeec--CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCC
Q 012245 292 KEIACG--GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQ 369 (467)
Q Consensus 292 ~~ia~G--~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~ 369 (467)
..++.. ....+.-..+|.|..|-... ++ ....+. .....|..++....+.+.-..||.|..|-...
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLEN-GE----------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTT-TE----------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc----------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 444443 34555666788888885321 11 011111 12235677777667777778899999997543
Q ss_pred CCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCC
Q 012245 370 FGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 370 ~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~ 423 (467)
..+ ...........+..++..... ++...+|.|+.|=...
T Consensus 382 ~~~-------------~~~~~~~~~~~~~~~~~~~~~-l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 382 YSR-------------KFSYHHTNLSAITTFYVSDNI-LVSGSENQFNIYNLRS 421 (464)
T ss_dssp CCE-------------EEEEECTTCCCEEEEEECSSE-EEEEETTEEEEEETTT
T ss_pred Cce-------------eeeecCCCCccEEEEEeCCCE-EEEecCCeEEEEECCC
Confidence 111 111111222345556655554 4444589999996644
No 39
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=68.41 E-value=68 Score=28.91 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=54.1
Q ss_pred cCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC-----CeEEEEEcCCcEEEEeCCCCC
Q 012245 297 GGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL-----WHTVCISVEGRVYVFGGNQFG 371 (467)
Q Consensus 297 G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~-----~~~~al~~~g~vy~wG~n~~g 371 (467)
...+.++-..+|.|+.|-.... + +...... ...|..++... ...++-..+|.|+.|-.....
T Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~-~-----------~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 179 EERVVCAGYDNGDIKLFDLRNM-A-----------LRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CCCEEEEEETTSEEEEEETTTT-E-----------EEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred CCCEEEEEccCCeEEEEECccC-c-----------eeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 4445555667788988864321 1 1111111 22466665542 444445678899998643210
Q ss_pred cccCCCCCCCccceeeecCccCCCceEEEEecCC---eEEEEeCCCcEEEEeCCC
Q 012245 372 QLGTGVDQAENVPKLLETPILESKRAKVVSCGAR---HSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 372 qlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~---h~~al~~~G~vy~wG~n~ 423 (467)
. ......... ......|..++.... ..+.-..||.|+.|-...
T Consensus 246 ~--------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 246 P--------TKGFASVSE-KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp T--------TTEEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred c--------ccceeeecc-CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 0 000000000 012346777776654 344457899999997643
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=66.07 E-value=84 Score=29.07 Aligned_cols=99 Identities=15% Similarity=0.034 Sum_probs=52.8
Q ss_pred CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCC-eEEEEEcCCcEEEEeCCCCCcccCC
Q 012245 298 GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLW-HTVCISVEGRVYVFGGNQFGQLGTG 376 (467)
Q Consensus 298 ~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-~~~al~~~g~vy~wG~n~~gqlG~~ 376 (467)
..+.+.-..+|.|+.|-.... .....+. .....|..++...+ ..++...+|.|+.|-....-
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----- 321 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNG-----------NSQNCFY-GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT----- 321 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSB-----------SCSEEEC-CCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE-----
T ss_pred CCEEEEEcCCCEEEEEECCCC-----------ccceEec-CCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc-----
Confidence 345555567888888853321 0111111 11224655555433 45556678899999753210
Q ss_pred CCCCCccceeeecCccCCCceEEEEec--CCeEEEEeCCCcEEEEeCC
Q 012245 377 VDQAENVPKLLETPILESKRAKVVSCG--ARHSAVLTEDGQVLSWGWN 422 (467)
Q Consensus 377 ~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~h~~al~~~G~vy~wG~n 422 (467)
....+. .....|..++.. ....++-..+|.|+.|-..
T Consensus 322 ------~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 322 ------LLALSI---VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp ------EEEEEE---CTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred ------EeEecc---cCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 011111 223456666655 3455556788999999764
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=65.52 E-value=78 Score=28.55 Aligned_cols=123 Identities=10% Similarity=0.042 Sum_probs=57.2
Q ss_pred cEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceecccc--CCccEEE--EEeC--CCeEEEEEcCCcEE
Q 012245 290 YVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSL--MDIQVEQ--IAAG--LWHTVCISVEGRVY 363 (467)
Q Consensus 290 ~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~--v~~G--~~~~~al~~~g~vy 363 (467)
.|..++....+.+.-..+|.|..|-.....+.-............+..+ ....|.. +..- ..+.++-..+|.|+
T Consensus 233 ~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 233 YVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp CCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred eEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence 3444444456777777889999997654322110000000000111100 0111211 2222 33444456788899
Q ss_pred EEeCCCCCcccCCCCCCCccceeeecCccC-CCceEEEEec--CCeEEEEeCCCcEEEEeC
Q 012245 364 VFGGNQFGQLGTGVDQAENVPKLLETPILE-SKRAKVVSCG--ARHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 364 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~~~i~~i~~G--~~h~~al~~~G~vy~wG~ 421 (467)
.|-......+ ........... ...|..++.. ..+.+.-..||.|+.|-.
T Consensus 313 vwd~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 313 VWDLEVEDPH---------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEECCSSSGG---------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEECCCCCCc---------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 9975431110 01111111111 3467777765 345555678999999954
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=61.63 E-value=1.5e+02 Score=30.56 Aligned_cols=99 Identities=11% Similarity=0.064 Sum_probs=47.6
Q ss_pred ccchhhceeeeeEEEEeecCCCCCCCCCCCccceecccCCCCCceeeecCCcc-eeEEEecCCcEEEecCCCCCCCcccc
Q 012245 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLT 87 (467)
Q Consensus 9 ~~~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~-~~~~l~~~G~vy~wG~~~~~g~lg~~ 87 (467)
+...++-...++.|.+|-...+. ....+. .....|..++....+ +.+....+|.|+.|-... +..
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~~~--- 89 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQV--------EVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEK--- 89 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCE---
T ss_pred CCCEEEEEeCCCEEEEEECCCCc--------eEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcE---
Confidence 33444555667888888642211 011111 112334444322221 344457789999996543 211
Q ss_pred CCCCcCcccccCCCCCCCeeEEecC--ccEEEEEecCCcEEEee
Q 012245 88 SGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWG 129 (467)
Q Consensus 88 ~~~~~~~p~~v~~~~~~~i~~is~G--~~h~~aLt~~G~v~~wG 129 (467)
...+.. ....|..++.. ..+.+.-..||.|..|-
T Consensus 90 -------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 90 -------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp -------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred -------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 001110 11235555443 34556667789999986
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=61.38 E-value=1e+02 Score=28.41 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=53.0
Q ss_pred EEEEeec---CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC---CeEEEEEcCCcEEE
Q 012245 291 VKEIACG---GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL---WHTVCISVEGRVYV 364 (467)
Q Consensus 291 i~~ia~G---~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~---~~~~al~~~g~vy~ 364 (467)
+..|+.. ....+.-..++.|..|-.... + ....+. .....|..++... ...+.-..||.|+.
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D----------SAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSCG-G----------GCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ccchhhhhcccceEEEeecccceeEEECCCC-c----------EeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 5555543 222333367788888853211 1 111111 1223566676542 22333557899999
Q ss_pred EeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEec---CCeEEEEeCCCcEEEEeCCC
Q 012245 365 FGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCG---ARHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 365 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G---~~h~~al~~~G~vy~wG~n~ 423 (467)
|-... + +.+... --...|..|+.. ....+.-..||.|+.|=...
T Consensus 297 wd~~~-~-------------~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 297 LDADF-S-------------EVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ECTTS-C-------------EEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EECCC-C-------------cEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 95322 1 111110 112357788764 23334456899999996544
No 44
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=59.86 E-value=1e+02 Score=27.94 Aligned_cols=108 Identities=12% Similarity=-0.031 Sum_probs=53.2
Q ss_pred CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCC-----eEEEEEcCCcEEEEeCCCCCc
Q 012245 298 GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLW-----HTVCISVEGRVYVFGGNQFGQ 372 (467)
Q Consensus 298 ~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-----~~~al~~~g~vy~wG~n~~gq 372 (467)
..+.++-..+|.|+.|-.....+ ...+..........|..++...+ ..+....||.|+.|-......
T Consensus 172 ~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 172 SRKFVTGGADNLVKIWKYNSDAQ--------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp TCEEEEEETTSCEEEEEEETTTT--------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred CCEEEEEeCCCeEEEEEecCCCc--------ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 34555666789999986432110 00111111111235666666543 334456789999997443110
Q ss_pred ccCCCCCCCccceeeecCccCCCceEEEEecC--CeEEEEeCCCcEEEEeCC
Q 012245 373 LGTGVDQAENVPKLLETPILESKRAKVVSCGA--RHSAVLTEDGQVLSWGWN 422 (467)
Q Consensus 373 lG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~h~~al~~~G~vy~wG~n 422 (467)
......... ......|..++... .+.++...+|.|+.|=.+
T Consensus 244 --------~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 244 --------PWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp --------CCEEEESSS-SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred --------cceeeeecc-ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 000011110 01223566666543 344455789999999754
No 45
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=59.52 E-value=1.2e+02 Score=28.73 Aligned_cols=109 Identities=9% Similarity=0.069 Sum_probs=65.4
Q ss_pred ccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC--CeEEEEEcCCcEEEEe
Q 012245 289 SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL--WHTVCISVEGRVYVFG 366 (467)
Q Consensus 289 ~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~al~~~g~vy~wG 366 (467)
..|..++....+.+.-..+|.|..|-...... ...+. .....|..++... ...+.-..||.|+.|-
T Consensus 271 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC-----------LYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 45677777777777788899999996432110 01111 1122455555433 3445556788999997
Q ss_pred CCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCC
Q 012245 367 GNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 367 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~ 423 (467)
.... + ....+. .....|..++....+.+.-..||.|..|-...
T Consensus 339 ~~~~-~----------~~~~~~---~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 339 LENG-E----------LMYTLQ---GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp TTTT-E----------EEEEEC---CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CCCC-c----------EEEEEe---CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 4321 0 011111 22346788888888888889999999997654
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=58.98 E-value=1.1e+02 Score=28.09 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=52.2
Q ss_pred chhhceeeeeEEEEeecCCCCCCCCCCCccceecccCCCCCceeeecCCc----c----eeEEEecCCcEEEecCCCCCC
Q 012245 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGC----G----FALATSESGKLITWGSADDEG 82 (467)
Q Consensus 11 ~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~----~----~~~~l~~~G~vy~wG~~~~~g 82 (467)
..++....++.|++|--...... .+......+. .....|..++.... + +.+....+|.|+.|-... +
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~--~ 101 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNE--NPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR--E 101 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTC--CGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE--C
T ss_pred CeEEEEcCCCEEEEEECCCcccc--cCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC--C
Confidence 45566677899999977432210 0010111111 12344555543322 1 334446688888885442 1
Q ss_pred CccccCCCCcCcccccCCCC----CCCeeEEecC------ccE-EEEEecCCcEEEeeC
Q 012245 83 QSYLTSGKHGETPEPFPLPT----EASVVKAAAG------WAH-CVSVTEAGEVYTWGW 130 (467)
Q Consensus 83 ~lg~~~~~~~~~p~~v~~~~----~~~i~~is~G------~~h-~~aLt~~G~v~~wG~ 130 (467)
.. ........+.... ...|..++.. ..+ .++-..+|.|+.|-.
T Consensus 102 ~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 102 DE-----TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TT-----TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cc-----cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 10 0000011111111 2346555544 445 666678899999974
No 47
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=58.69 E-value=99 Score=27.45 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=56.8
Q ss_pred EEEEeecCceEEEEecCCc-EEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcC-Cc-EEEEeC
Q 012245 291 VKEIACGGRHSAVVTDAGA-LLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVE-GR-VYVFGG 367 (467)
Q Consensus 291 i~~ia~G~~~s~~lt~~g~-v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~-g~-vy~wG~ 367 (467)
+.-.........+++.+|+ +|.++.. ..|.-+..+.+..+.-........++++.+ |+ +|.++.
T Consensus 138 ~lv~~~~~~~v~~~d~~G~~~w~~~~~-------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 138 YLVPLFATSEVREIAPNGQLLNSVKLS-------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEEEETTTTEEEEECTTSCEEEEEECS-------------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred EEEEecCCCEEEEECCCCCEEEEEECC-------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 4333334555666766665 4444432 112223333333455333344456677766 65 566664
Q ss_pred CCCCcccCCCCCCCccceeeecCccCCCceEEEEe--c---------CCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012245 368 NQFGQLGTGVDQAENVPKLLETPILESKRAKVVSC--G---------ARHSAVLTEDGQVLSWGWNKYGQLGL 429 (467)
Q Consensus 368 n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G---------~~h~~al~~~G~vy~wG~n~~gqlG~ 429 (467)
+... ......|.-+.. +.+.++. |+. | ..+.+.++.+|++ .|=.+.....|.
T Consensus 205 ~~~~------~~~l~~~~~~~~--~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 205 NDIE------GVQLFFVAQLFP--LQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp GGSB------SCCCSEEEEEEE--CTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred CCCC------CccccccccceE--cCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 3210 001122333322 3344444 333 2 3357888899987 777777666654
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=57.22 E-value=1.2e+02 Score=27.95 Aligned_cols=119 Identities=8% Similarity=-0.017 Sum_probs=55.7
Q ss_pred EEEEeecCc-eEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC--CeEEEEEcCCcEEEEeC
Q 012245 291 VKEIACGGR-HSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL--WHTVCISVEGRVYVFGG 367 (467)
Q Consensus 291 i~~ia~G~~-~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~al~~~g~vy~wG~ 367 (467)
|..++...+ ..++...+|.|+.|-.... .+..........|..++... ...++-..+|.|+.|-.
T Consensus 292 i~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 292 IVSASWVGDDKVISCSMDGSVRLWSLKQN------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEETTTT------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEECCCC------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 444444332 5555667888888864321 11111111223466665543 33444556889999974
Q ss_pred CCCCcccC---CCCCCC----ccceeeecCccCCC-ceEEEEecCC--eEEEEeCCCcEEEEeC
Q 012245 368 NQFGQLGT---GVDQAE----NVPKLLETPILESK-RAKVVSCGAR--HSAVLTEDGQVLSWGW 421 (467)
Q Consensus 368 n~~gqlG~---~~~~~~----~~p~~v~~~~~~~~-~i~~i~~G~~--h~~al~~~G~vy~wG~ 421 (467)
........ +..... ..+....+...... .|..++.... +.++...+|.|+.|-.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp HHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred CCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 32110000 000000 00111111111112 6777776533 4556678888888853
No 49
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=55.45 E-value=2.4e+02 Score=30.95 Aligned_cols=69 Identities=10% Similarity=-0.059 Sum_probs=35.2
Q ss_pred ceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeC
Q 012245 52 WKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (467)
Q Consensus 52 i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~ 130 (467)
+..++....+..++...+|.++.|-... ...+... ...-........++-.....++-+.+|.|..|-.
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~-~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~ 869 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHT-SGLLAEI---------HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTT-CCEEEEE---------ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecC-CCceeEE---------cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Confidence 3333333333455666788999997654 2211100 0000111223344445566667777889999874
No 50
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=54.38 E-value=1.5e+02 Score=28.16 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=58.3
Q ss_pred EEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCC
Q 012245 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQF 370 (467)
Q Consensus 291 i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~ 370 (467)
|.+++. ....+++.+++.|..|--....+. .....+ ...+.++.+-....++++.+|.|+.|--...
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEEccCC
Confidence 888888 667777778888888864432211 111111 1235566666656777899999999964321
Q ss_pred CcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEE
Q 012245 371 GQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSW 419 (467)
Q Consensus 371 gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~w 419 (467)
++ .+ +. ..|..|+-...=.++...||++..|
T Consensus 157 -~~---------~~--~~------~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 157 -ST---------KQ--LA------QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp -CE---------EE--EE------ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred -cc---------cc--cc------CCceEEEEcCCceEEEEcCCcEEEE
Confidence 11 11 11 1466666555555556667776666
No 51
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=53.83 E-value=1.3e+02 Score=27.43 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=92.9
Q ss_pred EEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEee
Q 012245 217 VAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIAC 296 (467)
Q Consensus 217 Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~ 296 (467)
++.+..+.+++|+.|++|..-....-..+....-. +....+... ...+|+.+..
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~l~------------------------~~e~i~~~~~ 107 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELINLG------------------------DQEEILTIKN 107 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSCCC------------------------TTCCEEEEEE
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccCCC------------------------CCCEEEEEEE
Confidence 45677889999999999998654321111111000 001111111 1155666655
Q ss_pred c-----CceEEEEecCCcEEEEeeCCCCcc-cCCCCCCccCceeccccCCccEEEEEe--CCCeEEEEEcCCcEEEEeCC
Q 012245 297 G-----GRHSAVVTDAGALLTFGWGLYGQC-GHGSTNDQLRPSYASSLMDIQVEQIAA--GLWHTVCISVEGRVYVFGGN 368 (467)
Q Consensus 297 G-----~~~s~~lt~~g~v~~wG~n~~gql-G~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~~~al~~~g~vy~wG~n 368 (467)
. ..+.+++|++|.++..--.++-.. +.+ -..+...++.+++.+.. +..+.++++++|.+.-+-..
T Consensus 108 ~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-------~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ 180 (312)
T 1suu_A 108 SKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG-------VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSR 180 (312)
T ss_dssp ESCCCTTCEEEEEETTSEEEEEEGGGGCC----C-------EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred eccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc-------EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHH
Confidence 4 456889999999998765443110 000 01112122345555443 45678889999998888765
Q ss_pred CCCcccCCCCCCCccceeeecCccCCCceEEEEe--cCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012245 369 QFGQLGTGVDQAENVPKLLETPILESKRAKVVSC--GARHSAVLTEDGQVLSWGWNKYGQLGL 429 (467)
Q Consensus 369 ~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~h~~al~~~G~vy~wG~n~~gqlG~ 429 (467)
+.-..|.... --..+.. ..+..|+.+.. ...+.++++++|.+...-..++-..+.
T Consensus 181 ev~~~gR~~~----Gv~~i~L--~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 181 DVRLTNRGTQ----GVCGMKL--KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp GSCBCCTTBC----CEECCCC--CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred HccccCCCCC----CeEeEEe--CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCC
Confidence 5333333111 0111221 12445666543 345678889999888777766644443
No 52
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=53.77 E-value=1.4e+02 Score=27.60 Aligned_cols=115 Identities=10% Similarity=0.016 Sum_probs=66.1
Q ss_pred cccchhhceeeeeEEEEeecCCCCCCCCCCCccce----ecccCCCCCceeeecCC----cceeEEEecCCcEEEecCCC
Q 012245 8 REENEKMEECKETVVYMWGYLPGTSPEKSPILSPI----PARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSAD 79 (467)
Q Consensus 8 ~~~~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~----~~~~~~~~~i~~v~~g~----~~~~~~l~~~G~vy~wG~~~ 79 (467)
+.+.+++=.+.+|++|..--. .++...-...-. .+++.++++|+.+.... ..+.+.+|++|.+.-.--..
T Consensus 51 ~t~d~ll~fT~~Gr~y~~~~~--~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 51 STHDLILFFTTQGRVYRAKAY--DLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp ETTSEEEEEETTSEEEEEEGG--GSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCeEEEEEHH--HCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 455566677788888876643 333221112222 34566688999886553 23667889999888764332
Q ss_pred CCCCccccCCCCcCcccccCCCCCCCeeE--EecCccEEEEEecCCcEEEeeCC
Q 012245 80 DEGQSYLTSGKHGETPEPFPLPTEASVVK--AAAGWAHCVSVTEAGEVYTWGWR 131 (467)
Q Consensus 80 ~~g~lg~~~~~~~~~p~~v~~~~~~~i~~--is~G~~h~~aLt~~G~v~~wG~n 131 (467)
...+- ..-...+.+.++-.++. +..+..+.+++|++|++|.+-..
T Consensus 129 ~~~~~-------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 129 FDSNR-------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp GCCCC-------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred hhccc-------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 11110 01112223333333333 34467889999999999988754
No 53
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=53.66 E-value=84 Score=25.11 Aligned_cols=106 Identities=9% Similarity=-0.040 Sum_probs=60.5
Q ss_pred ccEEEEeecC-ceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeC-CCeEEEEEcCCcEEEEe
Q 012245 289 SYVKEIACGG-RHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAG-LWHTVCISVEGRVYVFG 366 (467)
Q Consensus 289 ~~i~~ia~G~-~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~~~~al~~~g~vy~wG 366 (467)
.+..++.|-. .+-+-|..||.|=+-... .+...-..+... ...++.|.|- ..+.+++..+|+||.--
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~----------~~~~s~lei~sv-~~G~V~L~g~~sg~yL~mn~~G~l~Gs~ 98 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDR----------SDTHIQFQISPE-GNGEVLLKSTETGQYLRINPDGTVDGTR 98 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEE-ETTEEEEEETTTTEEEEECTTSBEEEEC
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCC----------CCCceEEEEEEc-cCCEEEEEEecCCEEEeECCCCCEeecc
Confidence 5678888876 677888889999754321 111111122211 1247788875 57888999999999642
Q ss_pred CCCCCcccCCCCCCCccceeeecCccCCCceEEEE-ecCCeEEEEeCCCcEEE
Q 012245 367 GNQFGQLGTGVDQAENVPKLLETPILESKRAKVVS-CGARHSAVLTEDGQVLS 418 (467)
Q Consensus 367 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~-~G~~h~~al~~~G~vy~ 418 (467)
.. .+......+. ..+.-++.|. .-....+|++++|++|.
T Consensus 99 ~~----------t~ecsflEi~---~en~y~v~i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 99 DR----------SDTHIQFQIS---PEGNGEVLLKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp CT----------TCGGGCEEEE---ECSTTCEEEEETTTCCEEEECTTSBEEE
T ss_pred cC----------CCCceEEEEE---eecCcEEEEEEecCCEEEEECCCcCCcc
Confidence 11 1112222222 1122233333 22345899999999996
No 54
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=53.27 E-value=32 Score=31.24 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=12.3
Q ss_pred CceEEEEecCCcEEEEeeC
Q 012245 298 GRHSAVVTDAGALLTFGWG 316 (467)
Q Consensus 298 ~~~s~~lt~~g~v~~wG~n 316 (467)
..|+++. -+++||.+|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 3466555 46889999853
No 55
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=52.71 E-value=1.2e+02 Score=26.77 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=13.7
Q ss_pred eEEEEEcCCcEEEEeCCCCCccc
Q 012245 352 HTVCISVEGRVYVFGGNQFGQLG 374 (467)
Q Consensus 352 ~~~al~~~g~vy~wG~n~~gqlG 374 (467)
+.+.++.+|+| .|-.+.....|
T Consensus 245 ~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 245 QLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp SEEEECTTSBE-EEEECCTTTSC
T ss_pred eEEEECCCCCE-EEEecCccccc
Confidence 57778888875 56555444443
No 56
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=52.06 E-value=1.5e+02 Score=27.41 Aligned_cols=169 Identities=10% Similarity=0.008 Sum_probs=90.0
Q ss_pred EEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEee
Q 012245 217 VAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIAC 296 (467)
Q Consensus 217 Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~ 296 (467)
.+....+.+++|+.|++|..-....-..+....-. +....++.. ...+|+.+.+
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~--~i~~~l~l~------------------------~~e~i~~~~~ 102 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ--HVANLLAFQ------------------------PEERIAQVIQ 102 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE--EHHHHTTCC------------------------TTCCEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE--EHHHccCCC------------------------CCCEEEEEEE
Confidence 45667778889999999987653332221111000 000111111 1266777766
Q ss_pred cC-----ceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEE--EeCCCeEEEEEcCCcEEEEeCC-
Q 012245 297 GG-----RHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQI--AAGLWHTVCISVEGRVYVFGGN- 368 (467)
Q Consensus 297 G~-----~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~~~~al~~~g~vy~wG~n- 368 (467)
.. ...+++|++|.+.-.-...+... ...-...+..-++..++.+ ..+..+.++++++|++|.+--.
T Consensus 103 ~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~------~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~ 176 (327)
T 3uc1_A 103 IRGYTDAPYLVLATRNGLVKKSKLTDFDSN------RSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATD 176 (327)
T ss_dssp ESSTTSSSEEEEEETTSEEEEEEGGGGCCC------CSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCT
T ss_pred eccCCCCCEEEEEcCCCEEEEeEHHHhhcc------ccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcc
Confidence 53 46888999998887654332110 0001111222223344443 3456778889999999999866
Q ss_pred -CCCcccCCCCCCCccceeeecCccCCCceEEEEecC--CeEEEEeCCCcEEEEeCCC
Q 012245 369 -QFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGA--RHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 369 -~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~h~~al~~~G~vy~wG~n~ 423 (467)
.--.+|....- . ..+.+ .++.+|+.+..-. .+.+.+|+.|.+.-.=..+
T Consensus 177 ~eip~~gr~a~G---v-~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 177 EALRPMGRATSG---V-QGMRF--NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp TTSCCCCTTSBC---E-ESSCC--CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred cccCcCCcCCCC---e-eeecC--CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 33233322111 0 11222 3456788776643 4677789999776654433
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=51.16 E-value=1.6e+02 Score=27.59 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=52.2
Q ss_pred hhhceeeeeEEEEeecCCCCCCCCCCCccceecccCC-CCCceeeecCCcc-eeEEEecCCcEEEecCCCCCCCccccCC
Q 012245 12 EKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCG-GDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSG 89 (467)
Q Consensus 12 ~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~~-~~~i~~v~~g~~~-~~~~l~~~G~vy~wG~~~~~g~lg~~~~ 89 (467)
.+.++.-++.||+|=...+.. ........ ...|..|+....+ +.+.-+.||.|..|-... +..
T Consensus 117 n~lAvgld~tV~lWd~~tg~~--------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~----- 181 (420)
T 4gga_A 117 NVLAVALDNSVYLWSASSGDI--------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKR----- 181 (420)
T ss_dssp SEEEEEETTEEEEEETTTCCE--------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE-----
T ss_pred CEEEEEeCCEEEEEECCCCCE--------EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcE-----
Confidence 366788899999996533321 11112211 3446666544333 333337788888886543 111
Q ss_pred CCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEee
Q 012245 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129 (467)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG 129 (467)
...+. .-...+..++......+.-..++.++.|-
T Consensus 182 -----~~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 182 -----LRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp -----EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred -----EEEEe-CCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 01111 11234666666666666667778888775
No 58
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=50.95 E-value=1.4e+02 Score=26.79 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=57.4
Q ss_pred EEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccc--cCCccEEEEEeCCCe----EEEEEcCCcEEE
Q 012245 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASS--LMDIQVEQIAAGLWH----TVCISVEGRVYV 364 (467)
Q Consensus 291 i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~--~~~~~i~~v~~G~~~----~~al~~~g~vy~ 364 (467)
+..+..-....++.+.++.+..|-...... ....+.. .....+..+...... .++-..+|.|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 173 CYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred ceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 445555556777778888898886543211 0011111 111234444433333 555677899999
Q ss_pred EeCCCCCcccCCCCCCCccceeeecCc---------cCCCceEEEEecCC--eEEEEeCCCcEEEEeCCC
Q 012245 365 FGGNQFGQLGTGVDQAENVPKLLETPI---------LESKRAKVVSCGAR--HSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 365 wG~n~~gqlG~~~~~~~~~p~~v~~~~---------~~~~~i~~i~~G~~--h~~al~~~G~vy~wG~n~ 423 (467)
|-....... .....+.... .....|..++.... +.+.-..||.|+.|-...
T Consensus 243 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 243 HYINPPNPA--------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp EESSCSCHH--------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EecCCCCcc--------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 975432110 0000011000 00014777766533 455567899999996543
No 59
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=50.72 E-value=1.3e+02 Score=26.54 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=49.8
Q ss_pred ccCCCCCceeeecC-CcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecC--ccEEEEEec
Q 012245 45 RLCGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTE 121 (467)
Q Consensus 45 ~~~~~~~i~~v~~g-~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G--~~h~~aLt~ 121 (467)
.+..+..++.+... ...+.+++|+.|++|..--.. . .............+++..+..|+.+... ..+.+.+|+
T Consensus 28 ~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~e-l---p~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~ 103 (256)
T 1zvt_A 28 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT-L---PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASD 103 (256)
T ss_dssp CCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGG-S---CCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBT
T ss_pred cCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH-C---CCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeC
Confidence 34455666665322 223678889999999987653 1 1111111111234556667788888663 445788899
Q ss_pred CCcEEEeeCCC
Q 012245 122 AGEVYTWGWRE 132 (467)
Q Consensus 122 ~G~v~~wG~n~ 132 (467)
+|.+.-.-..+
T Consensus 104 ~G~~Kr~~~~e 114 (256)
T 1zvt_A 104 AGYGFVCTFND 114 (256)
T ss_dssp TSEEEEEEGGG
T ss_pred CCeEEEeEHHH
Confidence 99888765433
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=50.26 E-value=1.4e+02 Score=26.72 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=35.1
Q ss_pred CCceeeecCCcc-eeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecC--ccEEEEEecCCcEE
Q 012245 50 DSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVY 126 (467)
Q Consensus 50 ~~i~~v~~g~~~-~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G--~~h~~aLt~~G~v~ 126 (467)
..|..++....+ +.+.-..||.|+.|-... +. ....+.. ....|..++.. ..+.+....||.|+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--GE----------RLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTT--CC----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--ch----------hhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 445555443222 333335677888885432 11 1111111 12345555543 45667777899999
Q ss_pred EeeC
Q 012245 127 TWGW 130 (467)
Q Consensus 127 ~wG~ 130 (467)
.|-.
T Consensus 100 iwd~ 103 (369)
T 3zwl_B 100 LWDV 103 (369)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9974
No 61
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=48.02 E-value=2.1e+02 Score=28.04 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=34.5
Q ss_pred cCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCC
Q 012245 297 GGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGN 368 (467)
Q Consensus 297 G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n 368 (467)
...+.++...+|.|+.|-.... .+..........|..++. .. .+.-..||.|..|-..
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~------------~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHD------------EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEE------------EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred CCCeEEEEECCCCEEEEECCCC------------cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 5566677788899999864320 111111112335777777 55 5556678888888643
No 62
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=47.48 E-value=1.7e+02 Score=26.77 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=39.2
Q ss_pred CCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecC------c---cEEEEE
Q 012245 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG------W---AHCVSV 119 (467)
Q Consensus 49 ~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G------~---~h~~aL 119 (467)
...|..++... .+.+.-..||.|+.|-... +... ........+. .....|..++.. . ...+..
T Consensus 16 ~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~--~~~~----~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 16 DADIFSVSACN-SFTVSCSGDGYLKVWDNKL--LDNE----NPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp SSCEEEEEECS-SEEEEEETTSEEEEEESBC--CTTC----CGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hcCeEEEEecC-CeEEEEcCCCEEEEEECCC--cccc----cCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEE
Confidence 45666666554 3555567899999997654 1100 0000011111 112345555443 3 455556
Q ss_pred ecCCcEEEeeC
Q 012245 120 TEAGEVYTWGW 130 (467)
Q Consensus 120 t~~G~v~~wG~ 130 (467)
..||.|+.|-.
T Consensus 88 ~~dg~i~iw~~ 98 (397)
T 1sq9_A 88 SFSGDLLFYRI 98 (397)
T ss_dssp ETTSCEEEEEE
T ss_pred cCCCCEEEEEc
Confidence 77899999863
No 63
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=46.40 E-value=2.7e+02 Score=28.79 Aligned_cols=108 Identities=12% Similarity=-0.041 Sum_probs=51.9
Q ss_pred ceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCC-----eEEEEEcCCcEEEEeCCCCCcc
Q 012245 299 RHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLW-----HTVCISVEGRVYVFGGNQFGQL 373 (467)
Q Consensus 299 ~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-----~~~al~~~g~vy~wG~n~~gql 373 (467)
...+.-..+|.|..|-.....+ ...+..........|..++...+ ..+.-..||.|+.|-.......
T Consensus 171 ~~l~sgs~dg~I~iwd~~~~~~--------~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 171 RKFVTGGADNLVKIWKYNSDAQ--------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp CCEEEEETTSCEEEEEEETTTT--------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred CEEEEEECCCeEEEEeccCCcc--------cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 4455556788899886432110 00111111112235777766543 3344556899999975431100
Q ss_pred cCCCCCCCccceeeecCccCCCceEEEEe--cCCeEEEEeCCCcEEEEeCCC
Q 012245 374 GTGVDQAENVPKLLETPILESKRAKVVSC--GARHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 374 G~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~h~~al~~~G~vy~wG~n~ 423 (467)
. ....... ......|..++. ...+.+.-..||.|+.|-.+.
T Consensus 243 -------~-~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 243 -------W-KKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp -------C-BCCBSSS-SCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred -------c-eeEEecc-CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 0 0000000 001123444443 334455557899999997654
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=46.13 E-value=2.2e+02 Score=27.83 Aligned_cols=111 Identities=8% Similarity=0.037 Sum_probs=58.3
Q ss_pred cEEEEeecCceEEEEec-CCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC--CeEEEEEcCCcEEEEe
Q 012245 290 YVKEIACGGRHSAVVTD-AGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL--WHTVCISVEGRVYVFG 366 (467)
Q Consensus 290 ~i~~ia~G~~~s~~lt~-~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~al~~~g~vy~wG 366 (467)
.+..++....+.+.-.. +|.|+.|-.... + ..+..+.. ....|..++... .+.+.-..||.|+.|-
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~---------~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 516 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-E---------VSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYD 516 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEE-E---------EEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCc-c---------ccccccCC-ccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence 34455544445555556 788888864321 0 00011111 123566666543 3444456789999997
Q ss_pred CCCCCcccCCCCCCCccceeeecCccCCCceEEEEec------------CCeEEEEeCCCcEEEEeCCCC
Q 012245 367 GNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCG------------ARHSAVLTEDGQVLSWGWNKY 424 (467)
Q Consensus 367 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G------------~~h~~al~~~G~vy~wG~n~~ 424 (467)
....-.+. .........|..++.. ....+.-..||.|+.|-....
T Consensus 517 ~~~~~~~~-------------~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 517 LQSREVKT-------------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp TTTTEEEE-------------CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCCCccee-------------EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 54321110 0100123457777763 345555678999999977553
No 65
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=46.00 E-value=96 Score=31.67 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=32.0
Q ss_pred ceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEE----eCCCeEEEEEcCCcEEEEeC
Q 012245 299 RHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIA----AGLWHTVCISVEGRVYVFGG 367 (467)
Q Consensus 299 ~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~----~G~~~~~al~~~g~vy~wG~ 367 (467)
.+++++..+|+||.+|-.... ......| ...+...+. .-..|++++..+|+||++|-
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~------~v~~yd~------~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAK------KTSLYDS------SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTT------CEEEEEG------GGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred cccccCCCCCCEEEeCCCCCC------ceEEecC------cCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 345677788999999953221 0000111 111122221 22467777777999999995
No 66
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=45.80 E-value=2e+02 Score=27.21 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=38.8
Q ss_pred CCCceeeecCCcceeEEEecCCc-EEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecC---------ccEEEE
Q 012245 49 GDSWKDVCGGGCGFALATSESGK-LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG---------WAHCVS 118 (467)
Q Consensus 49 ~~~i~~v~~g~~~~~~~l~~~G~-vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G---------~~h~~a 118 (467)
.+.+..|..|..-| ++++.||+ +|.--.....+.-|.. ...-..+.......+..|..+ .-+.++
T Consensus 69 ~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~----~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a 143 (386)
T 3sjl_D 69 GRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGER----TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 143 (386)
T ss_dssp TEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEE----EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred CeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCC----CCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence 34455566665545 89999988 7764321000000000 011122233333345556554 357789
Q ss_pred EecCCc-EEEee
Q 012245 119 VTEAGE-VYTWG 129 (467)
Q Consensus 119 Lt~~G~-v~~wG 129 (467)
++.||+ ||+..
T Consensus 144 ~spDGk~lyVan 155 (386)
T 3sjl_D 144 LTPDGKTLLFYQ 155 (386)
T ss_dssp ECTTSSEEEEEE
T ss_pred EcCCCCEEEEEE
Confidence 999886 67753
No 67
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=45.72 E-value=79 Score=30.10 Aligned_cols=76 Identities=11% Similarity=0.137 Sum_probs=47.0
Q ss_pred cCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEE
Q 012245 330 LRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAV 409 (467)
Q Consensus 330 ~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~a 409 (467)
..|.....+.. |.+++. +...+++..++.|..|=-....+. ...+. + ...+.++.+-....++
T Consensus 79 ~~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~--~-~~~v~~i~~~~p~~av 141 (388)
T 1xip_A 79 LTFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTS--F-EKPVFQLKNVNNTLVI 141 (388)
T ss_dssp CCCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEE--C-SSCEEEEEECSSEEEE
T ss_pred ccceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Cccce--e-ecceeeEEecCCCEEE
Confidence 34533223444 889999 778888888899999974432211 01110 1 1235566655556777
Q ss_pred EeCCCcEEEEeCC
Q 012245 410 LTEDGQVLSWGWN 422 (467)
Q Consensus 410 l~~~G~vy~wG~n 422 (467)
++.+|.|+.|=..
T Consensus 142 ~~~dG~L~v~dl~ 154 (388)
T 1xip_A 142 LNSVNDLSALDLR 154 (388)
T ss_dssp EETTSEEEEEETT
T ss_pred EECCCCEEEEEcc
Confidence 8999999999554
No 68
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=45.00 E-value=74 Score=28.46 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=11.9
Q ss_pred ceEEEEecCCcEEEEeeC
Q 012245 299 RHSAVVTDAGALLTFGWG 316 (467)
Q Consensus 299 ~~s~~lt~~g~v~~wG~n 316 (467)
.|++++. +++||.+|-.
T Consensus 94 ~~~~~~~-~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAA-EGKIYTSGGS 110 (306)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEECCC
Confidence 4565554 6899999853
No 69
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=44.15 E-value=2.1e+02 Score=26.91 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=19.3
Q ss_pred CCeeEEec---CccEEEEEecCCcEEEeeCC
Q 012245 104 ASVVKAAA---GWAHCVSVTEAGEVYTWGWR 131 (467)
Q Consensus 104 ~~i~~is~---G~~h~~aLt~~G~v~~wG~n 131 (467)
..|..|+. +....+....+|.|+.|-..
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 34666665 44556666789999999743
No 70
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=44.00 E-value=1.9e+02 Score=26.36 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=49.7
Q ss_pred ccCCCCCceeee-cCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecC-----ccEEEE
Q 012245 45 RLCGGDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-----WAHCVS 118 (467)
Q Consensus 45 ~~~~~~~i~~v~-~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G-----~~h~~a 118 (467)
.+..+..++.+. +-...+.+++|+.|++|.+--.. .-..+.. ..-......+++..+..|+.+... ..+.++
T Consensus 42 ~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~-ip~~~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~ 119 (312)
T 1suu_A 42 DLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYE-IKDSSRA-SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLL 119 (312)
T ss_dssp CCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGG-SCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEE
T ss_pred ccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHH-CCCCCcc-CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEE
Confidence 334455555542 22233778889999999986543 1111110 011122234556666778877654 456899
Q ss_pred EecCCcEEEeeCCC
Q 012245 119 VTEAGEVYTWGWRE 132 (467)
Q Consensus 119 Lt~~G~v~~wG~n~ 132 (467)
+|++|.++-.-..+
T Consensus 120 ~T~~G~~kr~~l~~ 133 (312)
T 1suu_A 120 TTASGKIARFESTD 133 (312)
T ss_dssp EETTSEEEEEEGGG
T ss_pred EeCCCeEEEEEHHH
Confidence 99999999876433
No 71
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=42.75 E-value=2.1e+02 Score=26.50 Aligned_cols=116 Identities=11% Similarity=0.003 Sum_probs=51.5
Q ss_pred cEEEEeec--CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccc-cCCccEEEEEeCCC--eEEEEEcCCcEEE
Q 012245 290 YVKEIACG--GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASS-LMDIQVEQIAAGLW--HTVCISVEGRVYV 364 (467)
Q Consensus 290 ~i~~ia~G--~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~v~~G~~--~~~al~~~g~vy~ 364 (467)
.|..++.. ..+.+.-..|+.|..|-.............. ........ -....|..++...+ +.+.-..||.|+.
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i 336 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN-SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC-CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 35555543 3344445578888888643221110000000 00000010 01124666665443 3333456888999
Q ss_pred EeCCCCCcccCCCCCCCccce-eeecCccCCCceEEEEecC-------C-eEEEEeCCCcEEEEeC
Q 012245 365 FGGNQFGQLGTGVDQAENVPK-LLETPILESKRAKVVSCGA-------R-HSAVLTEDGQVLSWGW 421 (467)
Q Consensus 365 wG~n~~gqlG~~~~~~~~~p~-~v~~~~~~~~~i~~i~~G~-------~-h~~al~~~G~vy~wG~ 421 (467)
|-.... .+. .+. .....|..++... . ..+.-..||.|..|-.
T Consensus 337 wd~~~~------------~~~~~l~---~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 337 WDKKSG------------NPLLMLQ---GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EETTTC------------CEEEEEE---CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EECCCC------------eEEEEEC---CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 964321 111 111 1223577776543 2 2333467899999954
No 72
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=42.61 E-value=2.1e+02 Score=26.61 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=18.3
Q ss_pred CCeeEEec--CccEEEEEecCCcEEEeeC
Q 012245 104 ASVVKAAA--GWAHCVSVTEAGEVYTWGW 130 (467)
Q Consensus 104 ~~i~~is~--G~~h~~aLt~~G~v~~wG~ 130 (467)
..|..|+. .....+.-..||.|..|-.
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEe
Confidence 34666655 3456667778899999963
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=41.90 E-value=1.9e+02 Score=25.76 Aligned_cols=118 Identities=9% Similarity=-0.046 Sum_probs=54.0
Q ss_pred CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCe---EEEEEcCCcEEEEeCCCCCccc
Q 012245 298 GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWH---TVCISVEGRVYVFGGNQFGQLG 374 (467)
Q Consensus 298 ~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~---~~al~~~g~vy~wG~n~~gqlG 374 (467)
....++-..+|.|+.|-...... .......... .....|..++...+. .+.-..||.|+.|-.......-
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHP------TKGFASVSEK-AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRS 296 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEET------TTEEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred CCEEEEECCCCeEEEEeCcCCCc------ccceeeeccC-CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccc
Confidence 34555567788998886432110 0000000111 122356666665443 3344578999999754321110
Q ss_pred CCCCCC-----CccceeeecCccCCCceEEEEecCC--eEE-EEeCCCcEEEEeCC
Q 012245 375 TGVDQA-----ENVPKLLETPILESKRAKVVSCGAR--HSA-VLTEDGQVLSWGWN 422 (467)
Q Consensus 375 ~~~~~~-----~~~p~~v~~~~~~~~~i~~i~~G~~--h~~-al~~~G~vy~wG~n 422 (467)
...... ......+.........|..++.... ..+ .-..||.|+.|-..
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 000000 0001111111122346777776533 233 35778999998543
No 74
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=41.52 E-value=1.7e+02 Score=25.25 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=12.2
Q ss_pred eeEEEecCCcEEEecC
Q 012245 62 FALATSESGKLITWGS 77 (467)
Q Consensus 62 ~~~~l~~~G~vy~wG~ 77 (467)
+.++++.+|++|.-..
T Consensus 23 ~~i~~d~~g~l~v~~~ 38 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQH 38 (300)
T ss_dssp EEEEECTTSCEEEEET
T ss_pred ceeeECCCCCEEEEcC
Confidence 6677888888888654
No 75
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=40.09 E-value=2e+02 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=21.4
Q ss_pred cEEEEEeCCCeeEEEecCCcEEEEEcCC
Q 012245 213 KITKVAAGGRHTLILSDMGQVWGWGYGG 240 (467)
Q Consensus 213 ~i~~Ia~G~~h~~alt~~G~vy~wG~n~ 240 (467)
.|..++...+..++.+.+|.|+.|-...
T Consensus 152 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp CEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred ceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 5777777777766678899999997643
No 76
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=39.99 E-value=1.9e+02 Score=25.53 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=11.5
Q ss_pred CeEEEEeCCCcEEEEeC
Q 012245 405 RHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 405 ~h~~al~~~G~vy~wG~ 421 (467)
.|++++. +++||+.|-
T Consensus 246 ~~~~~~~-~~~i~v~GG 261 (301)
T 2vpj_A 246 YVGATVL-RGRLYAIAG 261 (301)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEcC
Confidence 4555554 789999985
No 77
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=39.66 E-value=2.3e+02 Score=26.10 Aligned_cols=70 Identities=4% Similarity=-0.122 Sum_probs=36.9
Q ss_pred cEEEEeecCc---eEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCCeEEE-EEcCCcEEEE
Q 012245 290 YVKEIACGGR---HSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVC-ISVEGRVYVF 365 (467)
Q Consensus 290 ~i~~ia~G~~---~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~a-l~~~g~vy~w 365 (467)
.|..++...+ +.+.-..+|.|+.|-.....+ ....+.......|..+.......++ -..||.|..|
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLD 361 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEE
Confidence 3555554433 556667889999996432111 0111222123345555555444444 3458889999
Q ss_pred eCCC
Q 012245 366 GGNQ 369 (467)
Q Consensus 366 G~n~ 369 (467)
-...
T Consensus 362 ~~~~ 365 (420)
T 3vl1_A 362 IISD 365 (420)
T ss_dssp EECC
T ss_pred eccC
Confidence 7543
No 78
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=38.41 E-value=2e+02 Score=24.96 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=10.3
Q ss_pred eEEEEEcCCcEEEEeC
Q 012245 352 HTVCISVEGRVYVFGG 367 (467)
Q Consensus 352 ~~~al~~~g~vy~wG~ 367 (467)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4566667777776654
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=37.86 E-value=2.2e+02 Score=25.47 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=51.8
Q ss_pred cchhhceeeeeEEEEeecCCCCCCCCCCCccceecccC--CCCCceeeecC----CcceeEEEecCCcEEEecCCCCCCC
Q 012245 10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLC--GGDSWKDVCGG----GCGFALATSESGKLITWGSADDEGQ 83 (467)
Q Consensus 10 ~~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~--~~~~i~~v~~g----~~~~~~~l~~~G~vy~wG~~~~~g~ 83 (467)
...++-...++.|++|=-... ...++... ....|..++.. +. +.+.-..||.|..|-... +.
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~--~~ 90 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGE---------THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEEN--GR 90 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETT---------EEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEEET--TE
T ss_pred CCEEEEEECCCcEEEEecCCC---------cceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCEEEEEEcCC--Cc
Confidence 334445556778888855211 11122111 13456666542 22 444557789999996543 11
Q ss_pred ccccCCCCcCcccccCCCCCCCeeEEecC----ccEEEEEecCCcEEEeeCC
Q 012245 84 SYLTSGKHGETPEPFPLPTEASVVKAAAG----WAHCVSVTEAGEVYTWGWR 131 (467)
Q Consensus 84 lg~~~~~~~~~p~~v~~~~~~~i~~is~G----~~h~~aLt~~G~v~~wG~n 131 (467)
. .+..........|..++.. ....+....||.|..|-..
T Consensus 91 ~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 91 W---------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp E---------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred e---------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 0 0011111122346666554 3466777888999999743
No 80
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=37.64 E-value=2.4e+02 Score=25.72 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=52.5
Q ss_pred cEEEEeec---CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceecc-ccCCccEEEEEeCC--CeEEE-EEcCCcE
Q 012245 290 YVKEIACG---GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYAS-SLMDIQVEQIAAGL--WHTVC-ISVEGRV 362 (467)
Q Consensus 290 ~i~~ia~G---~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~-~~~~~~i~~v~~G~--~~~~a-l~~~g~v 362 (467)
.|..|+.. ....+.-..||.|..|-......+ ..+. ......+..++... .+.++ -..++.|
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~-----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA-----------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB-----------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCcee-----------eeeeeccccccccchhhhhcccceEEEeecccce
Confidence 35555542 233445567888888843211000 0011 11122456665532 23333 3578889
Q ss_pred EEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecC---CeEEEEeCCCcEEEEeC
Q 012245 363 YVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGA---RHSAVLTEDGQVLSWGW 421 (467)
Q Consensus 363 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~---~h~~al~~~G~vy~wG~ 421 (467)
+.|-.... .....+. .....|..|+... ...+.-..||.|+.|=.
T Consensus 252 ~~wd~~~~-----------~~~~~~~---~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 252 SLVNIKNP-----------DSAQTSA---VHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp EEEESSCG-----------GGCEEEC---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred eEEECCCC-----------cEeEEEe---ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 99964321 0111111 2234677777642 23334568999999944
No 81
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=37.62 E-value=42 Score=26.49 Aligned_cols=65 Identities=14% Similarity=0.022 Sum_probs=34.7
Q ss_pred ceeeecCCcceeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCC-CCCCCeeEEecCccEEEEEecCCcEEEe
Q 012245 52 WKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPL-PTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (467)
Q Consensus 52 i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~-~~~~~i~~is~G~~h~~aLt~~G~v~~w 128 (467)
++.|..-..++.+++..+|+||.--... ........+.. .....++.+..|. .+|++++|++|.-
T Consensus 49 ~V~I~g~~sg~yL~m~~~G~v~Gs~~~s----------~ec~flE~~~~~~g~v~ikg~~sg~--YLamnk~G~lygs 114 (132)
T 3q7x_A 49 EVLLRSTETGQFLRINPDGTVDGTRDRS----------DPGIQFQISPEGNGEVLLRSTETGQ--FLRINPDGTVDGT 114 (132)
T ss_dssp EEEEEETTTCCEEEECTTSBEEEECC-C----------CGGGCEEEEEEETTEEEEEETTTCC--EEEECTTSBEEEE
T ss_pred EEEEEEEcccEEEEECCCCCEeeccCCC----------CCceeEEEEeecCcEEEEEeccCCe--EEEECCCCcCcCC
Confidence 4555443344778999999999642211 00000011110 1122344444455 7999999999963
No 82
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=36.81 E-value=1.5e+02 Score=23.19 Aligned_cols=104 Identities=10% Similarity=-0.053 Sum_probs=53.5
Q ss_pred EEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEE-eCCCeEEEEEcCCcEEEEeCCC
Q 012245 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIA-AGLWHTVCISVEGRVYVFGGNQ 369 (467)
Q Consensus 291 i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~-~G~~~~~al~~~g~vy~wG~n~ 369 (467)
+.--.|...+-+-|..||+|-+-.+. ..... -..+....- .++.|. .-..+.+++..+|+||.--...
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~---------~~~~s-~l~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~Gs~~~s 76 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDR---------SDPGI-QFQISPEGN-GEVLLRSTETGQFLRINPDGTVDGTRDRS 76 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCT---------TCGGG-CEEEEEEET-TEEEEEETTTCCEEEECTTSBEEEECC-C
T ss_pred heeeeccCcEEEEECCCCcEEeecCC---------CCCCc-EEEEEeccc-CEEEEEEEcccEEEEECCCCCEeeccCCC
Confidence 44556777777888899999764321 01111 111111111 244443 3345678899999999643211
Q ss_pred CCcccCCCCCCCccceeeecCccCCCceEEE-EecCCeEEEEeCCCcEEE
Q 012245 370 FGQLGTGVDQAENVPKLLETPILESKRAKVV-SCGARHSAVLTEDGQVLS 418 (467)
Q Consensus 370 ~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i-~~G~~h~~al~~~G~vy~ 418 (467)
.....-..+. . ....+.+ +.-....+|+..+|++|.
T Consensus 77 ---------~ec~flE~~~---~-~~g~v~ikg~~sg~YLamnk~G~lyg 113 (132)
T 3q7x_A 77 ---------DPGIQFQISP---E-GNGEVLLRSTETGQFLRINPDGTVDG 113 (132)
T ss_dssp ---------CGGGCEEEEE---E-ETTEEEEEETTTCCEEEECTTSBEEE
T ss_pred ---------CCceeEEEEe---e-cCcEEEEEeccCCeEEEECCCCcCcC
Confidence 0111111111 1 1123333 233445899999999997
No 83
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=36.56 E-value=2.2e+02 Score=24.94 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCceeeecCCcc-eeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecC----ccEEEEEecCCc
Q 012245 50 DSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG----WAHCVSVTEAGE 124 (467)
Q Consensus 50 ~~i~~v~~g~~~-~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G----~~h~~aLt~~G~ 124 (467)
..|..++....+ +.+.-..||.|..|-....... ......+. .....|..|+.. ....+.-..||.
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN--------WELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC--------EEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc--------ceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 345555433222 3444467888888855421000 00001111 122457777654 356666788999
Q ss_pred EEEeeCC
Q 012245 125 VYTWGWR 131 (467)
Q Consensus 125 v~~wG~n 131 (467)
|..|-..
T Consensus 83 v~vwd~~ 89 (351)
T 3f3f_A 83 VKLWEED 89 (351)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9999753
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=36.45 E-value=2.4e+02 Score=25.31 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=37.3
Q ss_pred cEEEEEeCCC--eEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEec-CCeEEEEeCCCcEEE
Q 012245 342 QVEQIAAGLW--HTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCG-ARHSAVLTEDGQVLS 418 (467)
Q Consensus 342 ~i~~v~~G~~--~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G-~~h~~al~~~G~vy~ 418 (467)
.|..++...+ +.+....||.|+.|-..... ....+. .....|..++.. ....++...+|.|+.
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~---~~~~~v~~~~~~~~~~~l~~~~d~~i~i 269 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKM-----------AVATLA---SETLPLLAVTFITESSLVAAGHDCFPVL 269 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-----------EEEEEE---CSSCCEEEEEEEETTEEEEEETTSSCEE
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------eeEEEc---cCCCCeEEEEEecCCCEEEEEeCCeEEE
Confidence 4666655433 44445678888888643211 011111 122346666543 345566668899999
Q ss_pred EeCCC
Q 012245 419 WGWNK 423 (467)
Q Consensus 419 wG~n~ 423 (467)
|-...
T Consensus 270 ~~~~~ 274 (372)
T 1k8k_C 270 FTYDS 274 (372)
T ss_dssp EEEET
T ss_pred EEccC
Confidence 87644
No 85
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=36.31 E-value=2.1e+02 Score=25.22 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=12.3
Q ss_pred CceEEEEecCCcEEEEeeC
Q 012245 298 GRHSAVVTDAGALLTFGWG 316 (467)
Q Consensus 298 ~~~s~~lt~~g~v~~wG~n 316 (467)
..|+++.. +++||.+|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 34555555 6899999853
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=35.47 E-value=3.9e+02 Score=27.52 Aligned_cols=103 Identities=11% Similarity=0.029 Sum_probs=54.4
Q ss_pred ccchhhceeeeeEEEEeecCCCCCCCCCCCccceecccC--CCCCceeeecCCc---ceeEEEecCCcEEEecCCCCCCC
Q 012245 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLC--GGDSWKDVCGGGC---GFALATSESGKLITWGSADDEGQ 83 (467)
Q Consensus 9 ~~~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~--~~~~i~~v~~g~~---~~~~~l~~~G~vy~wG~~~~~g~ 83 (467)
+...++-...++.|.+|=-... ....+... -...|..++.... .+.+.-..||.|+.|-... +.
T Consensus 20 dg~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~--~~ 88 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GR 88 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETT---------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET--TE
T ss_pred CCCeEEEEECCCcEEEEecCCC---------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC--Cc
Confidence 3345556667889999965211 01111111 1345666654211 2445557799999996543 11
Q ss_pred ccccCCCCcCcccccCCCCCCCeeEEecC----ccEEEEEecCCcEEEeeCC
Q 012245 84 SYLTSGKHGETPEPFPLPTEASVVKAAAG----WAHCVSVTEAGEVYTWGWR 131 (467)
Q Consensus 84 lg~~~~~~~~~p~~v~~~~~~~i~~is~G----~~h~~aLt~~G~v~~wG~n 131 (467)
. .+..........|..++.. ....+.-+.||.|..|-..
T Consensus 89 ~---------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 89 W---------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp E---------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred c---------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 0 0001111122346666654 4467777889999999743
No 87
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=35.39 E-value=1.7e+02 Score=23.31 Aligned_cols=107 Identities=10% Similarity=-0.057 Sum_probs=58.7
Q ss_pred CCCcEEEEEeCC-CeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCC
Q 012245 210 PGVKITKVAAGG-RHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGR 288 (467)
Q Consensus 210 ~~~~i~~Ia~G~-~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (467)
......++-|-. .+-+-+..||+|-+-..... .........+.
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~--------~~s~lei~sv~---------------------------- 71 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSD--------THIQFQISPEG---------------------------- 71 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTTC--------GGGCEEEEEEE----------------------------
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCCC--------CceEEEEEEcc----------------------------
Confidence 344788888866 67778889999986432110 00000000000
Q ss_pred ccEEEEeec-CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCC--ccEEEEEeCCCeEEEEEcCCcEEE
Q 012245 289 SYVKEIACG-GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMD--IQVEQIAAGLWHTVCISVEGRVYV 364 (467)
Q Consensus 289 ~~i~~ia~G-~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~v~~G~~~~~al~~~g~vy~ 364 (467)
..++.|.|- ..+-+++..+|+|++-- . ..+.....++..... ..|..+.. ...+|++.+|++|.
T Consensus 72 ~G~V~L~g~~sg~yL~mn~~G~l~Gs~--~--------~t~ecsflEi~~en~y~v~i~g~~s--g~YLamnk~Grlyg 138 (142)
T 3p6j_A 72 NGEVLLKSTETGQYLRINPDGTVDGTR--D--------RSDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDG 138 (142)
T ss_dssp TTEEEEEETTTTEEEEECTTSBEEEEC--C--------TTCGGGCEEEEECSTTCEEEEETTT--CCEEEECTTSBEEE
T ss_pred CCEEEEEEecCCEEEeECCCCCEeecc--c--------CCCCceEEEEEeecCcEEEEEEecC--CEEEEECCCcCCcc
Confidence 336677765 57788999999998632 1 111122222222222 22323323 45889999999985
No 88
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=34.26 E-value=4.1e+02 Score=27.42 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=41.3
Q ss_pred eeEEEecCCcEEEecCCCCCCCccccCCCCcCcccccCCCCCCCeeEEecC--ccEEEEEecCCcEEEeeC
Q 012245 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWGW 130 (467)
Q Consensus 62 ~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~~~~p~~v~~~~~~~i~~is~G--~~h~~aLt~~G~v~~wG~ 130 (467)
+.+++|+.|++|.---.. +.............+++..+.+|+.+... ..+.++.|++|.+.-.-.
T Consensus 516 ~ll~ft~~Gr~y~~~~~~----lP~~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l 582 (716)
T 1zvu_A 516 PVVFVDSTGRSYAIDPIT----LPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTF 582 (716)
T ss_dssp CEEEEETTSEEEEECTTT----SCCCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEG
T ss_pred EEEEEecCCcEEEEEeee----cccccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecH
Confidence 668889999999876543 21122222233344556677888888775 346677788898887553
No 89
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=33.86 E-value=2.8e+02 Score=25.44 Aligned_cols=101 Identities=8% Similarity=-0.190 Sum_probs=53.8
Q ss_pred eEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCCC---eEEEEEcCCcEEEEeCCCCCcccCC
Q 012245 300 HSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLW---HTVCISVEGRVYVFGGNQFGQLGTG 376 (467)
Q Consensus 300 ~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~---~~~al~~~g~vy~wG~n~~gqlG~~ 376 (467)
+.++-..+|.|..|-..... .+..+.......|..++...+ ..+.-..||.|+.|-.....+
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---- 325 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKE-----------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---- 325 (420)
T ss_dssp EEEEEETTSCEEEEETTTCC-----------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----
T ss_pred EEEEEcCCCeEEEEECCCCc-----------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----
Confidence 44455678888888532211 111122112235666666543 455566789999997543111
Q ss_pred CCCCCccceeeecCccCCCceEEEEecCCeEEE-EeCCCcEEEEeCCC
Q 012245 377 VDQAENVPKLLETPILESKRAKVVSCGARHSAV-LTEDGQVLSWGWNK 423 (467)
Q Consensus 377 ~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~a-l~~~G~vy~wG~n~ 423 (467)
....+.. .....|..+.......++ -..||.|..|-...
T Consensus 326 ------~~~~~~~--~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 326 ------PVGEFLI--NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp ------CSEEEEE--STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred ------chhhhhc--cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 0111211 123456666665555444 45689999997654
No 90
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=32.65 E-value=2.9e+02 Score=25.25 Aligned_cols=213 Identities=12% Similarity=-0.018 Sum_probs=102.3
Q ss_pred EEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEe
Q 012245 216 KVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIA 295 (467)
Q Consensus 216 ~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia 295 (467)
.++.+..+.+++|+.|++|..-....-..+....-. +....++.. .+.+|+.+.
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~--~i~~~i~L~------------------------~~e~Iv~~~ 98 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ--HIANIIPID------------------------RDEEIIKAI 98 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE--EGGGTSCCC------------------------TTCCEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc--ChhhccCCC------------------------CCCEEEEEE
Confidence 356678899999999999998764432222211100 000111111 114565543
Q ss_pred ec-----CceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEE--EeCCCeEEEEEcCCcEEEEeCC
Q 012245 296 CG-----GRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQI--AAGLWHTVCISVEGRVYVFGGN 368 (467)
Q Consensus 296 ~G-----~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~~~~al~~~g~vy~wG~n 368 (467)
.- ..+.+++|++|.+.-.-..++-... ...--..+...++..++.+ ..+..+.++++++|+++-+-.+
T Consensus 99 ~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~-----r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 99 PINDFELNGYFLFVTRNGMVKKTELKHYKAQR-----YSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp EESCTTSSCEEEEEETTSEEEEEEGGGGCCSC-----CSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGG
T ss_pred EecccCCCceEEEEeCCCeEEEeEHHHhhhcc-----ccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHH
Confidence 32 2357888999988776544332110 0000111111122344433 3367788899999999988765
Q ss_pred CCCcccCCCCCCCccceeeecCccCCCceEEEEec--CC-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEeecCC
Q 012245 369 QFGQLGTGVDQAENVPKLLETPILESKRAKVVSCG--AR-HSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHG 445 (467)
Q Consensus 369 ~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~-h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~ 445 (467)
+--.+|.... --..+.. .++..|+.+..= .. ..+.++++|...-.-..++-.-+.+.. -...+...+-.+
T Consensus 174 ev~~~gR~a~----GV~~i~L--~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~~~ 246 (323)
T 1wp5_A 174 EVSIVGVRAA----GVKGMNL--KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKANP 246 (323)
T ss_dssp GSCBCCSSCC----CEECCCC--CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSSSC
T ss_pred HCcccCCCCc----CEEEEEe--CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCCCC
Confidence 5333333111 0011221 234456666431 22 566678887655444444322222111 111122121112
Q ss_pred CceEEE--EecCCeEEEEEcCCC
Q 012245 446 FLPRNI--ACGWWHTLLLAETTQ 466 (467)
Q Consensus 446 ~~v~~v--~~G~~hs~~l~~~g~ 466 (467)
..+..+ ..+.++-+++++.|.
T Consensus 247 ~~l~~~~~v~~~~~i~~it~~g~ 269 (323)
T 1wp5_A 247 HRISGFVVAQDSDTIYLQTEKSF 269 (323)
T ss_dssp CCEEEEEEECTTCEEEEEETTSC
T ss_pred ceEEEEEEeCCCCeEEEEeCCCe
Confidence 233322 335667777777775
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=31.31 E-value=2.7e+02 Score=24.50 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=62.3
Q ss_pred ccEEEEeecCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCceeccccCCccEEEEEeCC---CeEEEEEcCCcEEEE
Q 012245 289 SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGL---WHTVCISVEGRVYVF 365 (467)
Q Consensus 289 ~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~v~~G~---~~~~al~~~g~vy~w 365 (467)
..|..++...+..++-+.++.|+.|-....+. .............|..++... ...++-..+|.+..|
T Consensus 151 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~ 221 (342)
T 1yfq_A 151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221 (342)
T ss_dssp CCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred CceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence 45777777777777778889999997543111 011111112223466666543 344445678889988
Q ss_pred eCCCCCcccCCCCCCCccceeeecCcc------CCCceEEEEec--CCeEEEEeCCCcEEEEeCC
Q 012245 366 GGNQFGQLGTGVDQAENVPKLLETPIL------ESKRAKVVSCG--ARHSAVLTEDGQVLSWGWN 422 (467)
Q Consensus 366 G~n~~gqlG~~~~~~~~~p~~v~~~~~------~~~~i~~i~~G--~~h~~al~~~G~vy~wG~n 422 (467)
-....+. .........+..... ....|..++.. ....++-..+|.|+.|=..
T Consensus 222 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 222 FFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 7544310 000001111111000 01257777654 3345556789999999654
No 92
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=31.09 E-value=3.1e+02 Score=25.03 Aligned_cols=267 Identities=9% Similarity=-0.019 Sum_probs=0.0
Q ss_pred hhceeeeeEEEEeecCCCCCCCCCCCccceecccCCCCCceeeecCCcceeEEE-ecCCcEEEecCCCCCCCccccCCCC
Q 012245 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALAT-SESGKLITWGSADDEGQSYLTSGKH 91 (467)
Q Consensus 13 ~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~~~~~~~~~~i~~v~~g~~~~~~~l-~~~G~vy~wG~~~~~g~lg~~~~~~ 91 (467)
......++.|++|=- .................|..++....+..++. ..||.|..|-.... ..
T Consensus 38 ~~~~~~d~~v~iw~~-------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~---------~~ 101 (416)
T 2pm9_A 38 DANFSTDSSLELWSL-------LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEA---------NN 101 (416)
T ss_dssp CSSCCCCCCCEEEES-------SSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSST---------TS
T ss_pred ccccCCCCeEEEEEc-------cCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccc---------cc
Q ss_pred cCcccccCCCCCCCeeEEecC---ccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCC
Q 012245 92 GETPEPFPLPTEASVVKAAAG---WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS 168 (467)
Q Consensus 92 ~~~p~~v~~~~~~~i~~is~G---~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 168 (467)
...+..........|..++.. ....+.-..||.|+.|-....
T Consensus 102 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------------------------------- 146 (416)
T 2pm9_A 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC----------------------------------- 146 (416)
T ss_dssp CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT-----------------------------------
T ss_pred cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC-----------------------------------
Q ss_pred CcccCcceeeecccccccccCCCCCCCCC------cccccceEEecCCCCcEEEEEeC-CCeeEEEecCCcEEEEEcCCC
Q 012245 169 DKRAGEEVVKRRKTSSAREESENPASGDE------FFTLSPCLVTLNPGVKITKVAAG-GRHTLILSDMGQVWGWGYGGE 241 (467)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~p~~v~~~~~~~i~~Ia~G-~~h~~alt~~G~vy~wG~n~~ 241 (467)
. ................-..++.- ....+.-..+|.|+.|-....
T Consensus 147 ----------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 147 ----------------------------TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp ----------------------------SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred ----------------------------ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Q ss_pred cccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEe--------ecCceEEEEecCC-cEEE
Q 012245 242 GQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIA--------CGGRHSAVVTDAG-ALLT 312 (467)
Q Consensus 242 gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia--------~G~~~s~~lt~~g-~v~~ 312 (467)
..+..+. .+.-..+++..++ .++.
T Consensus 199 -----------------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 199 -----------------------------------------------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp -----------------------------------------------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred -----------------------------------------------CcceEEeccccccccCCceEEEEECCCCCCEEE
Q ss_pred EeeCCC--CcccCCCCCCccCceeccc-cCCccEEEEEe---CCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCcccee
Q 012245 313 FGWGLY--GQCGHGSTNDQLRPSYASS-LMDIQVEQIAA---GLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKL 386 (467)
Q Consensus 313 wG~n~~--gqlG~~~~~~~~~p~~v~~-~~~~~i~~v~~---G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~ 386 (467)
.|.... +.+-.-+......|..... .....|..++. .....+.-..||.|+.|- ......
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd--------------~~~~~~ 297 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN--------------PESAEQ 297 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC--------------SSSCCE
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee--------------CCCCcc
Q ss_pred eecCccCCCceEEEEecC---CeEEEEeCCCcEEEE
Q 012245 387 LETPILESKRAKVVSCGA---RHSAVLTEDGQVLSW 419 (467)
Q Consensus 387 v~~~~~~~~~i~~i~~G~---~h~~al~~~G~vy~w 419 (467)
+.........|..++... ...+.-..||.|..|
T Consensus 298 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 298 LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEE
No 93
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=30.75 E-value=2.6e+02 Score=24.04 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=11.7
Q ss_pred eeEEEecCCcEEEecC
Q 012245 62 FALATSESGKLITWGS 77 (467)
Q Consensus 62 ~~~~l~~~G~vy~wG~ 77 (467)
+.++++.+|++|.-..
T Consensus 18 ~~i~~d~~g~l~v~~~ 33 (299)
T 2z2n_A 18 YGITVSDKGKVWITQH 33 (299)
T ss_dssp EEEEECTTSCEEEEET
T ss_pred cceEECCCCCEEEEec
Confidence 6677788888887543
No 94
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=29.72 E-value=3.2e+02 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=17.5
Q ss_pred CeeEEec-CccEEEEEecCCcEEEeeC
Q 012245 105 SVVKAAA-GWAHCVSVTEAGEVYTWGW 130 (467)
Q Consensus 105 ~i~~is~-G~~h~~aLt~~G~v~~wG~ 130 (467)
.|.+|+. .....++-..||.|..|-.
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWEL 110 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEec
Confidence 4666654 3455666678899999964
No 95
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=29.41 E-value=3.2e+02 Score=24.70 Aligned_cols=169 Identities=15% Similarity=0.112 Sum_probs=87.0
Q ss_pred EEEeCCCeeEEEecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEe
Q 012245 216 KVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIA 295 (467)
Q Consensus 216 ~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia 295 (467)
.++.+..+.+++|+.|++|..-..+.-..+....-. +....++.. .+.+|+.+.
T Consensus 48 ~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~--~i~~~l~l~------------------------~~e~i~~~~ 101 (307)
T 1zi0_A 48 LVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGR--PIVNLLPLE------------------------QDERITAIL 101 (307)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE--EGGGTSCCC------------------------TTCCEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe--EhhhccCCC------------------------CCCEEEEEE
Confidence 356678889999999999998764332222211100 000111111 114566554
Q ss_pred e-----cCceEEEEecCCcEEEEeeCCCCcccCCCCCCccCc-eeccccCCccEEEE--EeCCCeEEEEEcCCcEEEEeC
Q 012245 296 C-----GGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRP-SYASSLMDIQVEQI--AAGLWHTVCISVEGRVYVFGG 367 (467)
Q Consensus 296 ~-----G~~~s~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~p-~~v~~~~~~~i~~v--~~G~~~~~al~~~g~vy~wG~ 367 (467)
. ...+.+++|++|.+.-.-..++-... . .. ..+....+..++.+ ..+..+.++++++|+++-+-.
T Consensus 102 ~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~------r-~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~ 174 (307)
T 1zi0_A 102 PVTEFEEGVKVFMATANGTVKKTVLTEFNRLR------T-AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE 174 (307)
T ss_dssp EESCCCTTCEEEEEETTSEEEEEEGGGGTTCC------T-TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred EeccCCCCcEEEEEeCCCeEEEEEHHHhhccc------c-CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEH
Confidence 3 23457888999988766433321110 0 11 11111123345443 235677888999999998875
Q ss_pred CCCCcccCCCCCCCccceeeecCccCCCceEEEEec--CCeEEEEeCCCcEEEEeCCC
Q 012245 368 NQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCG--ARHSAVLTEDGQVLSWGWNK 423 (467)
Q Consensus 368 n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~h~~al~~~G~vy~wG~n~ 423 (467)
.+--.+|.... -...+.. ..+..|+.+..- ..+.+.+++.|.+--.=..+
T Consensus 175 ~~v~~~gr~a~----Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 175 SSVRAMGCNTT----GVRGIRL--GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp GGSCBCCTTCC----CEECCCC--CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred HHcCccCCCCC----CeEeEEe--CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 54333332111 1111222 234567776542 23466778888655554433
No 96
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=29.30 E-value=3.1e+02 Score=24.51 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.9
Q ss_pred eeEEEecCCcEEEecCCC
Q 012245 62 FALATSESGKLITWGSAD 79 (467)
Q Consensus 62 ~~~~l~~~G~vy~wG~~~ 79 (467)
..++++.+|++|.-+...
T Consensus 27 ~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 27 SGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp EEEEECTTCCEEEEECTT
T ss_pred eEEEECCCCCEEEEeCCC
Confidence 678899999999887654
No 97
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=28.29 E-value=3.2e+02 Score=24.29 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=12.0
Q ss_pred CeEEEEEcCCcEEEEeC
Q 012245 351 WHTVCISVEGRVYVFGG 367 (467)
Q Consensus 351 ~~~~al~~~g~vy~wG~ 367 (467)
.|++++ .+++||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 566555 6889999994
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=27.28 E-value=3.8e+02 Score=24.82 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=17.8
Q ss_pred cEEEEEeCC--CeeEEEecCCcEEEEEcC
Q 012245 213 KITKVAAGG--RHTLILSDMGQVWGWGYG 239 (467)
Q Consensus 213 ~i~~Ia~G~--~h~~alt~~G~vy~wG~n 239 (467)
.|..++... .+.+.-..+|.|..|-..
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 577776643 344445788999999754
No 99
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=25.68 E-value=3.5e+02 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=12.1
Q ss_pred eEEEEeCCCc-EEEEeCC
Q 012245 406 HSAVLTEDGQ-VLSWGWN 422 (467)
Q Consensus 406 h~~al~~~G~-vy~wG~n 422 (467)
+.+++..+|+ ||+-...
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 6678888997 7775543
No 100
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=25.23 E-value=3.8e+02 Score=24.18 Aligned_cols=116 Identities=9% Similarity=0.003 Sum_probs=62.5
Q ss_pred cccchhhceeeeeEEEEeecCCCCCCCCCCCccce----ecccCCCCCceeeecC----CcceeEEEecCCcEEEecCCC
Q 012245 8 REENEKMEECKETVVYMWGYLPGTSPEKSPILSPI----PARLCGGDSWKDVCGG----GCGFALATSESGKLITWGSAD 79 (467)
Q Consensus 8 ~~~~~~~~~~~~~~v~~WG~~~~~~~~~~~~~~p~----~~~~~~~~~i~~v~~g----~~~~~~~l~~~G~vy~wG~~~ 79 (467)
..+.+++-.+.+|.+|-.-.. .++.......-+ .+++.+++.|+.+..- ...+.+++|++|.+.-.--..
T Consensus 51 ~~~~~ll~fT~~G~~~~~~~~--elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e 128 (307)
T 1zi0_A 51 NTHDHILCFSSRGRVYSMKVY--QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 128 (307)
T ss_dssp ETTCEEEEEETTSEEEEEEGG--GSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEECCCEEEEEEhh--HCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHH
Confidence 455666777777777777664 222221111222 3345567888887541 122567779999887663321
Q ss_pred CCCCccccCCCCcCcccccCCCCCCCeeEE--ecCccEEEEEecCCcEEEeeCCC
Q 012245 80 DEGQSYLTSGKHGETPEPFPLPTEASVVKA--AAGWAHCVSVTEAGEVYTWGWRE 132 (467)
Q Consensus 80 ~~g~lg~~~~~~~~~p~~v~~~~~~~i~~i--s~G~~h~~aLt~~G~v~~wG~n~ 132 (467)
.-.. ...--..+.+..+-.++.+ ..+..+.+++|++|+++-+-..+
T Consensus 129 -~~~~------~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~ 176 (307)
T 1zi0_A 129 -FNRL------RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESS 176 (307)
T ss_dssp -GTTC------CTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred -hhcc------ccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHH
Confidence 1000 0001112233333334433 34667899999999999876433
No 101
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=25.07 E-value=3.4e+02 Score=23.62 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=29.4
Q ss_pred EEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCCeEEEEe----CCCcEEEEeC
Q 012245 354 VCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLT----EDGQVLSWGW 421 (467)
Q Consensus 354 ~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h~~al~----~~G~vy~wG~ 421 (467)
+.-..||.|+.|-....-. -..+. .....|..++.......+++ .||.|..|=.
T Consensus 253 ~sg~~dg~i~vwd~~~~~~-----------~~~~~---~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKEI-----------VQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EECCTTSCEEEEETTTCCE-----------EEEEC---CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred EEECCCCEEEEEECCCchh-----------hhhhh---ccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 3345688999997433110 11111 12335777777655443332 5888999854
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=24.50 E-value=3.9e+02 Score=24.06 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCCceeeecCC-c-ceeEEEecCCcEEEecCCCCCCCccccCCCC-cCcccccCCCCCCCeeEEec---CccEEEEEecC
Q 012245 49 GDSWKDVCGGG-C-GFALATSESGKLITWGSADDEGQSYLTSGKH-GETPEPFPLPTEASVVKAAA---GWAHCVSVTEA 122 (467)
Q Consensus 49 ~~~i~~v~~g~-~-~~~~~l~~~G~vy~wG~~~~~g~lg~~~~~~-~~~p~~v~~~~~~~i~~is~---G~~h~~aLt~~ 122 (467)
...|..++... . .+.+.-..||.|..|-... ........... ...+..........|..++. +....+.-..|
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 34566665432 2 2444456789999996543 11110000000 00000000012345666665 44567777889
Q ss_pred CcEEEeeC
Q 012245 123 GEVYTWGW 130 (467)
Q Consensus 123 G~v~~wG~ 130 (467)
|.|..|-.
T Consensus 122 ~~i~iwd~ 129 (408)
T 4a11_B 122 KTLKVWDT 129 (408)
T ss_dssp SEEEEEET
T ss_pred CeEEEeeC
Confidence 99999974
No 103
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.80 E-value=5e+02 Score=24.30 Aligned_cols=16 Identities=6% Similarity=0.368 Sum_probs=10.5
Q ss_pred eeEEEecCCcEEEecC
Q 012245 62 FALATSESGKLITWGS 77 (467)
Q Consensus 62 ~~~~l~~~G~vy~wG~ 77 (467)
+.++++.+|+||.-..
T Consensus 134 ~~la~d~~g~lyv~d~ 149 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQR 149 (409)
T ss_dssp EEEEECSTTEEEEEET
T ss_pred eEEEEeCCCCEEEEec
Confidence 4566677777776654
No 104
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=20.11 E-value=4.8e+02 Score=23.51 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=36.0
Q ss_pred cEEEEEeCC---CeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEEEecCC-eEEE--EeCCCc
Q 012245 342 QVEQIAAGL---WHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGAR-HSAV--LTEDGQ 415 (467)
Q Consensus 342 ~i~~v~~G~---~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~-h~~a--l~~~G~ 415 (467)
.|..++... .+.+.-..|+.|+.|-... + +.+... --...|..|+.... ..++ -..||+
T Consensus 259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~-------------~~~~~~-~H~~~V~~v~~sp~~~~llas~s~D~~ 323 (344)
T 4gqb_B 259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-S-------------ELFRSQ-AHRDFVRDATWSPLNHSLLTTVGWDHQ 323 (344)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTC-C-------------EEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred CEEEEEEccCCCeEEEEEeCCCeEEEEECCC-C-------------cEEEEc-CCCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence 577777643 2333356789999995322 1 112211 11235888876522 2232 357999
Q ss_pred EEEEeC
Q 012245 416 VLSWGW 421 (467)
Q Consensus 416 vy~wG~ 421 (467)
|..|=.
T Consensus 324 v~~w~v 329 (344)
T 4gqb_B 324 VVHHVV 329 (344)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999954
Done!