Query 012246
Match_columns 467
No_of_seqs 288 out of 1187
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 4.6E-16 1.6E-20 128.1 6.5 59 219-277 5-64 (82)
2 4h10_B Circadian locomoter out 99.6 1.6E-15 5.5E-20 122.7 7.1 58 219-276 7-65 (71)
3 4ati_A MITF, microphthalmia-as 99.6 2.5E-15 8.4E-20 131.5 7.3 61 217-277 24-88 (118)
4 4h10_A ARYL hydrocarbon recept 99.6 1E-15 3.5E-20 124.2 3.5 55 216-270 5-63 (73)
5 1a0a_A BHLH, protein (phosphat 99.6 9.8E-16 3.3E-20 120.9 2.9 53 221-273 3-62 (63)
6 1an4_A Protein (upstream stimu 99.6 6.5E-16 2.2E-20 121.4 1.6 53 221-273 6-64 (65)
7 1hlo_A Protein (transcription 99.5 4.4E-14 1.5E-18 115.3 6.4 58 220-277 12-71 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 4.5E-14 1.6E-18 115.7 6.4 57 221-277 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.2E-13 4.1E-18 115.3 6.3 56 221-276 7-65 (88)
10 3u5v_A Protein MAX, transcript 99.4 3E-13 1E-17 110.5 5.3 57 221-277 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 2E-12 6.9E-17 106.3 7.0 57 221-277 2-61 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 5.5E-11 1.9E-15 95.3 5.1 53 221-273 13-67 (68)
13 4f3l_A Mclock, circadian locom 99.1 8.9E-11 3E-15 116.7 6.5 52 221-272 13-65 (361)
14 2ql2_B Neurod1, neurogenic dif 99.1 1.7E-10 5.8E-15 90.3 5.9 52 222-273 4-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 2.3E-10 7.8E-15 115.3 5.6 54 218-271 11-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 2.1E-08 7E-13 83.4 6.3 45 232-276 4-52 (83)
17 2lfh_A DNA-binding protein inh 98.6 1.3E-08 4.4E-13 81.8 2.9 46 225-270 19-67 (68)
18 4aya_A DNA-binding protein inh 98.1 4.5E-06 1.5E-10 71.2 7.2 50 228-277 33-85 (97)
19 3iot_A Maltose-binding protein 35.7 9.5 0.00032 37.9 0.6 10 259-268 274-284 (449)
20 3muj_A Transcription factor CO 34.2 53 0.0018 29.5 5.1 35 234-268 95-133 (138)
21 1pd7_B MAD1; PAH2, SIN3, eukar 20.3 99 0.0034 20.6 3.1 21 251-271 1-21 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.61 E-value=4.6e-16 Score=128.06 Aligned_cols=59 Identities=32% Similarity=0.467 Sum_probs=55.4
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHhhCCCC-CCccHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246 219 RAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQVMWM 277 (467)
Q Consensus 219 ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-~KldKAsIL~~AIeYIK~LQ~qvq~L~~ 277 (467)
..+..|+++||+||++||++|.+|++|||.+ .|+||++||++||+||++||.+++.|..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999999999999999999999998 7999999999999999999999999975
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=122.66 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=53.4
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHhhCCCC-CCccHhHHHHHHHHHHHHHHHHHHHHh
Q 012246 219 RAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQVMW 276 (467)
Q Consensus 219 ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-~KldKAsIL~~AIeYIK~LQ~qvq~L~ 276 (467)
..+.+|+++||+||++||++|.+|+.|||.+ .|+||++||++||+||+.||.++.-|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4466899999999999999999999999975 599999999999999999999998776
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.57 E-value=2.5e-15 Score=131.55 Aligned_cols=61 Identities=34% Similarity=0.574 Sum_probs=50.9
Q ss_pred cchhhhhcchhhHHHHHHHHHHHHHHHhhCCCCC----CccHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246 217 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQVMWM 277 (467)
Q Consensus 217 r~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~----KldKAsIL~~AIeYIK~LQ~qvq~L~~ 277 (467)
+.+.+..|+++||+||++||++|.+|++|||.|. |++|++||++||+||++||.+++.|..
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668999999999999999999999999985 688999999999999999999999874
No 4
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.56 E-value=1e-15 Score=124.22 Aligned_cols=55 Identities=38% Similarity=0.619 Sum_probs=50.2
Q ss_pred ccchhhhhcchhhHHHHHHHHHHHHHHHhhCCCC----CCccHhHHHHHHHHHHHHHHH
Q 012246 216 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSLQL 270 (467)
Q Consensus 216 rr~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~----~KldKAsIL~~AIeYIK~LQ~ 270 (467)
+.++.+..|+++||+||++||+.|.+|+.|||.| .|+|||+||++||+|||.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4455677999999999999999999999999987 699999999999999999974
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.56 E-value=9.8e-16 Score=120.89 Aligned_cols=53 Identities=30% Similarity=0.476 Sum_probs=48.1
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC-------CCccHhHHHHHHHHHHHHHHHHHH
Q 012246 221 AEVHNLSERRRRDRINEKMRALQELIPHC-------NKTDKASMLDEAIEYLKSLQLQLQ 273 (467)
Q Consensus 221 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-------~KldKAsIL~~AIeYIK~LQ~qvq 273 (467)
+.+|+++||+||++||+.|.+|+.|||.+ .|++||+||++||+||+.||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 35799999999999999999999999976 467899999999999999998763
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=6.5e-16 Score=121.37 Aligned_cols=53 Identities=34% Similarity=0.567 Sum_probs=48.9
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCCC------CccHhHHHHHHHHHHHHHHHHHH
Q 012246 221 AEVHNLSERRRRDRINEKMRALQELIPHCN------KTDKASMLDEAIEYLKSLQLQLQ 273 (467)
Q Consensus 221 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~------KldKAsIL~~AIeYIK~LQ~qvq 273 (467)
+..|+++||+||++||+.|.+|++|||.|. |++|++||++||+||++||.+++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999886 78999999999999999998753
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=4.4e-14 Score=115.28 Aligned_cols=58 Identities=29% Similarity=0.521 Sum_probs=54.1
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHhhCCCC--CCccHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246 220 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQVMWM 277 (467)
Q Consensus 220 a~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~KldKAsIL~~AIeYIK~LQ~qvq~L~~ 277 (467)
.+..|+..||+||++||+.|..|+.+||.+ .|++|++||.+||+||+.|+.+++.|..
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355899999999999999999999999987 5999999999999999999999999874
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.47 E-value=4.5e-14 Score=115.70 Aligned_cols=57 Identities=30% Similarity=0.532 Sum_probs=53.0
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC--CCccHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246 221 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQVMWM 277 (467)
Q Consensus 221 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~KldKAsIL~~AIeYIK~LQ~qvq~L~~ 277 (467)
+..|+..||+||++||+.|..|+++||.+ .|++|++||.+||+||+.|+.+++.|..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999985 6999999999999999999999988864
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=1.2e-13 Score=115.28 Aligned_cols=56 Identities=32% Similarity=0.503 Sum_probs=52.1
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC---CCccHhHHHHHHHHHHHHHHHHHHHHh
Q 012246 221 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMW 276 (467)
Q Consensus 221 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~KldKAsIL~~AIeYIK~LQ~qvq~L~ 276 (467)
+..||..||+||++||++|..|+++||.+ .|++|++||.+||+||++|+.+++.|.
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999976 599999999999999999999988765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.38 E-value=3e-13 Score=110.49 Aligned_cols=57 Identities=30% Similarity=0.426 Sum_probs=50.1
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCC---CCCc-cHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246 221 AEVHNLSERRRRDRINEKMRALQELIPH---CNKT-DKASMLDEAIEYLKSLQLQLQVMWM 277 (467)
Q Consensus 221 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~---~~Kl-dKAsIL~~AIeYIK~LQ~qvq~L~~ 277 (467)
+..||..||+||++||++|.+|+.+||. ..|. +|+.||.+||+||++||+++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999999995 3465 7999999999999999999999874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.32 E-value=2e-12 Score=106.30 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=52.2
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC---CCccHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246 221 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMWM 277 (467)
Q Consensus 221 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~KldKAsIL~~AIeYIK~LQ~qvq~L~~ 277 (467)
+..||..||+||+.||++|..|+++||.+ .|++|+.||.+||+||+.|+.+.+.|..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999965 5899999999999999999999988763
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.11 E-value=5.5e-11 Score=95.26 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=48.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC--CCccHhHHHHHHHHHHHHHHHHHH
Q 012246 221 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 273 (467)
Q Consensus 221 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~KldKAsIL~~AIeYIK~LQ~qvq 273 (467)
+..||..||+|+..||+.|..|+++||.. .|++|+.||..||+||++|++.++
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 44699999999999999999999999975 589999999999999999998653
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.08 E-value=8.9e-11 Score=116.70 Aligned_cols=52 Identities=29% Similarity=0.552 Sum_probs=43.1
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCC-CCCCccHhHHHHHHHHHHHHHHHHH
Q 012246 221 AEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQL 272 (467)
Q Consensus 221 ~~~H~~~ERrRRdrINe~~~~Lr~LVP-~~~KldKAsIL~~AIeYIK~LQ~qv 272 (467)
+..|+++||+||++||+.|.+|++||| ...|+||++||++||+|||.|+...
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 457999999999999999999999999 5569999999999999999998654
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.06 E-value=1.7e-10 Score=90.26 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=47.8
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhCCCC---CCccHhHHHHHHHHHHHHHHHHHH
Q 012246 222 EVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 273 (467)
Q Consensus 222 ~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~KldKAsIL~~AIeYIK~LQ~qvq 273 (467)
..||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||+.|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999975 489999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.00 E-value=2.3e-10 Score=115.27 Aligned_cols=54 Identities=35% Similarity=0.539 Sum_probs=48.9
Q ss_pred chhhhhcchhhHHHHHHHHHHHHHHHhhCC----CCCCccHhHHHHHHHHHHHHHHHH
Q 012246 218 SRAAEVHNLSERRRRDRINEKMRALQELIP----HCNKTDKASMLDEAIEYLKSLQLQ 271 (467)
Q Consensus 218 ~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP----~~~KldKAsIL~~AIeYIK~LQ~q 271 (467)
+.++++|+.+||+||++||+.|.+|+.||| ...|+||++||+.||+|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 445678999999999999999999999999 457999999999999999999853
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.69 E-value=2.1e-08 Score=83.43 Aligned_cols=45 Identities=31% Similarity=0.570 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhCCCCC----CccHhHHHHHHHHHHHHHHHHHHHHh
Q 012246 232 RDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQVMW 276 (467)
Q Consensus 232 RdrINe~~~~Lr~LVP~~~----KldKAsIL~~AIeYIK~LQ~qvq~L~ 276 (467)
|++||++|.+|..|||.+. |.+|++||.+||+||++||++++.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~ 52 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 52 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999864 78999999999999999998777654
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.62 E-value=1.3e-08 Score=81.82 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=41.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhCCCC---CCccHhHHHHHHHHHHHHHHH
Q 012246 225 NLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQL 270 (467)
Q Consensus 225 ~~~ERrRRdrINe~~~~Lr~LVP~~---~KldKAsIL~~AIeYIK~LQ~ 270 (467)
+..||+|+..||+.|..||++||.. .|++|..||..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999975 589999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.13 E-value=4.5e-06 Score=71.22 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCC---CCccHhHHHHHHHHHHHHHHHHHHHHhc
Q 012246 228 ERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMWM 277 (467)
Q Consensus 228 ERrRRdrINe~~~~Lr~LVP~~---~KldKAsIL~~AIeYIK~LQ~qvq~L~~ 277 (467)
||.|=..||+.|..||.+||.. .|+.|..+|..||+||+.|++.++.-..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4667788999999999999965 4899999999999999999999887654
No 19
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=35.74 E-value=9.5 Score=37.86 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=6.0
Q ss_pred HHHHHHHH-HH
Q 012246 259 DEAIEYLK-SL 268 (467)
Q Consensus 259 ~~AIeYIK-~L 268 (467)
+.|.++|+ +|
T Consensus 274 e~A~~fl~~~l 284 (449)
T 3iot_A 274 ELAKEFLENYL 284 (449)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 55666665 44
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=34.20 E-value=53 Score=29.54 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCC----CCccHhHHHHHHHHHHHHH
Q 012246 234 RINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSL 268 (467)
Q Consensus 234 rINe~~~~Lr~LVP~~----~KldKAsIL~~AIeYIK~L 268 (467)
.|+=.|..|+.+||.. .++-|-.||.+|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4778999999999975 4788999999999999876
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.27 E-value=99 Score=20.55 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=16.9
Q ss_pred CccHhHHHHHHHHHHHHHHHH
Q 012246 251 KTDKASMLDEAIEYLKSLQLQ 271 (467)
Q Consensus 251 KldKAsIL~~AIeYIK~LQ~q 271 (467)
|+....+|=+|.+||...+.+
T Consensus 1 ~~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 456788999999999987763
Done!