BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012249
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98
NL + L N ++ +P+ + L L+L N+ LQ +P+ F + L +NL+
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 99 IEVLPSSVSD-LTNLRSLSLGWCRRLKRVPSXXXXXXXXXXXXXXTRIEEVPEGM-EMLE 156
++ LP V D LTNL L L + +++ +PEG+ + L
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSY-----------------------NQLQSLPEGVFDKLT 181
Query: 157 NLSHLYLSSLQLKKFPAGILPRLRSL 182
L L L QLK P G+ RL SL
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 64 LSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSD-LTNLRSLSLGWCRR 122
L+ L+L N+ LQ +P F + LK + L ++ LP V D LTNL L+L
Sbjct: 87 LTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA---- 141
Query: 123 LKRVPSXXXXXXXXXXXXXXTRIEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRS 181
+++ +P+G+ + L NL+ L LS QL+ P G+ +L
Sbjct: 142 -------------------HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 182 LYKLKL 187
L L+L
Sbjct: 183 LKDLRL 188
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 73 ENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSXX-- 130
+ +Q +P ++ + G K+ ++S+ + +LTNL L L +L+ +P+
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDISA---------LKELTNLTYLILT-GNQLQSLPNGVFD 106
Query: 131 XXXXXXXXXXXXTRIEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSF 189
+++ +P+G+ + L NL++L L+ QL+ P G+ +L +L +L LS+
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 190 GN-EALRETV 198
++L E V
Sbjct: 167 NQLQSLPEGV 176
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 26/129 (20%)
Query: 64 LSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSD-LTNLRSLSLGWCRR 122
L L L N+ L +P F + L V++L + + VLPS+V D L +L+ L + C +
Sbjct: 66 LKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-CCNK 123
Query: 123 LKRVPSXXXXXXXXXXXXXXTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSL 182
L E+P G+E L +L+HL L QLK P G RL SL
Sbjct: 124 LT----------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 183 YKLKLSFGN 191
L FGN
Sbjct: 162 THAYL-FGN 169
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 27/171 (15%)
Query: 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRI 78
++ G +L + +E NL + L N ++ +P+ + L L+L N+ LQ +
Sbjct: 67 YLALGGNKLHDISALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSL 124
Query: 79 PECFFVHMHGLKVVNLSSTDIEVLPSSVSD-LTNLRSLSLGWCRRLKRVPSXXXXXXXXX 137
P+ F + L + L ++ LP V D LTNL L L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD------------------- 165
Query: 138 XXXXXTRIEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
+++ +PEG+ + L L L L+ QLK P G+ RL SL + L
Sbjct: 166 ----NNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 64 LSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSD-LTNLRSLSLGWCRR 122
L+ L+L N+ LQ +P F + LK + L ++ LP V D LTNL L L
Sbjct: 87 LTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL----- 140
Query: 123 LKRVPSXXXXXXXXXXXXXXTRIEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRS 181
+++ +P+G+ + L NL+ L L + QL+ P G+ +L
Sbjct: 141 ------------------YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 182 LYKLKLS 188
L +L L+
Sbjct: 183 LKQLSLN 189
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 73 ENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSXX-- 130
+ +Q +P ++ + G K+ ++S+ + +LTNL L L +L+ +P+
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDISA---------LKELTNLTYLILT-GNQLQSLPNGVFD 106
Query: 131 XXXXXXXXXXXXTRIEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
+++ +P+G+ + L NL++LYL QL+ P G+ +L +L +L L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 45 LMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPS 104
L N+++ +P+ + L+ L L N+ LQ +P F + L +NLS+ ++ LP+
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93
Query: 105 SVSD-LTNLRSLSLGWCRRLKRVPSXXXXXXXXXXXXXXTRIEEVPEGM-EMLENLSHLY 162
V D LT L+ L+L +++ +P+G+ + L L L
Sbjct: 94 GVFDKLTQLKELALN-----------------------TNQLQSLPDGVFDKLTQLKDLR 130
Query: 163 LSSLQLKKFPAGILPRLRSL 182
L QLK P G+ RL SL
Sbjct: 131 LYQNQLKSVPDGVFDRLTSL 150
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 145 IEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLS 188
++ +P G+ + L +L+ LYL +L+ P G+ +L SL L LS
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 8/165 (4%)
Query: 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE 100
+++ L N + +PS L L L N+ LQ +P F + L+ + ++ ++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 101 VLPSSVSD-LTNLRSLSLGWCRRLKRVPSXX--XXXXXXXXXXXXTRIEEVPEGM-EMLE 156
LP V D L NL L L +LK +P ++ +P+G+ + L
Sbjct: 99 ALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 157 NLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEA 201
+L L L + QLK+ P G +L L LKL N L+ E A
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLD--NNQLKRVPEGA 200
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 45 LMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPS 104
L N ++ +P+ + + L TL + N+ LQ +P F + L + L ++ LP
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPP 126
Query: 105 SVSD-LTNLRSLSLGWCRRLKRVPSXX--XXXXXXXXXXXXTRIEEVPEG-MEMLENLSH 160
V D LT L LSLG+ L+ +P +++ VPEG + L L
Sbjct: 127 RVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 161 LYLSSLQLKKFPAGILPRLRSLYKLKL 187
L L + QLK+ P G L L L+L
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQL 212
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL NN+ E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL NN+ E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL NN+ E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL NN+ E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL NN+ E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 193
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 46 MRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSS 105
+R NIEE+PS++ E L ++ N+ L+++P F M LK +NL+S ++ +P
Sbjct: 154 LRANIEEMPSHLFDDLENLESIEFGSNK-LRQMPRGIFGKMPKLKQLNLASNQLKSVPDG 212
Query: 106 VSD-LTNLRSLSL 117
+ D LT+L+ + L
Sbjct: 213 IFDRLTSLQKIWL 225
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 26/115 (22%)
Query: 75 LQRIPECFFVHMHGLKVVNLSSTDIEVLPSSV-SDLTNLRSLSLGWCRRLKRVPSXXXXX 133
L IP M L + L + +IE +PS + DL NL S+ G
Sbjct: 135 LTHIPANLLTDMRNLSHLELRA-NIEEMPSHLFDDLENLESIEFG--------------- 178
Query: 134 XXXXXXXXXTRIEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
++ ++P G+ + L L L+S QLK P GI RL SL K+ L
Sbjct: 179 --------SNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWL 225
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 38 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97
E + V +++ +PS + E L ++ L + + F + L +NL
Sbjct: 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDL----QSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 98 DIEVLPSSV-SDLTNLRSLSLGWCRRLKRVPSXXXXXXXXXXXXXXTRIEEVPEGM-EML 155
++ L + V DLT L +L L ++ +P G+ + L
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLA-----------------------NNQLASLPLGVFDHL 106
Query: 156 ENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLS 188
L LYL QLK P+G+ RL L +L+L+
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 38 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97
E + V +++ +PS + E L ++ L + + F + L +NL
Sbjct: 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDL----QSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 98 DIEVLPSSV-SDLTNLRSLSLGWCRRLKRVPSXXXXXXXXXXXXXXTRIEEVPEGM-EML 155
++ L + V DLT L +L L ++ +P G+ + L
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLA-----------------------NNQLASLPLGVFDHL 106
Query: 156 ENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLS 188
L LYL QLK P+G+ RL L +L+L+
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL N++ E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 25/115 (21%)
Query: 75 LQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSD-LTNLRSLSLGWCRRLKRVPSXXXXX 133
LQ +P F + L ++LS I+ LP V D LT L L L
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL---------------- 83
Query: 134 XXXXXXXXXTRIEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
+++ +P G+ + L L L L + QLK P GI RL SL K+ L
Sbjct: 84 -------HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL N + E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL N + E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL N + E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 31 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFF 83
PG LE++SL N + E+P+ + E L TLLLQ N +L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 144 RIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
+I+ +P+ + LE L L ++S QLK P GI RL SL K+ L
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 45 LMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPS 104
L +N I+EI N + + L L L N NL+ +P F G ++++S T I LPS
Sbjct: 161 LNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 105 SVSDLTNLRSLSLGWCRRLKRVPS 128
L NL+ L LK++P+
Sbjct: 220 --YGLENLKKLRARSTYNLKKLPT 241
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 45 LMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPS 104
L +N I+EI N + + L L L N NL+ +P F G ++++S T I LPS
Sbjct: 161 LNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 105 SVSDLTNLRSLSLGWCRRLKRVPS 128
L NL+ L LK++P+
Sbjct: 220 --YGLENLKKLRARSTYNLKKLPT 241
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98
+LE + L RN+I I L+TL L N L IP FV++ LK + L +
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP 147
Query: 99 IEVLPS-SVSDLTNLRSLSLGWCRRLKRV 126
IE +PS + + + +LR L LG +RL +
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYI 176
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 31/152 (20%)
Query: 40 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNEN-LQRIPECFFVHMHGLKVVNLSSTD 98
+V +R N+ E+P +S +T LL +EN +Q I F H+ L+++ LS
Sbjct: 45 FSKVICVRKNLREVPDGIS-----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99
Query: 99 IEVLP-SSVSDLTNLRSLSLGWCRRLKRVPSXXXXXXXXXXXXXXTRIEEVPEGMEM-LE 156
I + + + L NL +L L R+ +P G + L
Sbjct: 100 IRTIEIGAFNGLANLNTLEL-----------------------FDNRLTTIPNGAFVYLS 136
Query: 157 NLSHLYLSSLQLKKFPAGILPRLRSLYKLKLS 188
L L+L + ++ P+ R+ SL +L L
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 144 RIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
RI +P+ + L+ L L ++S QLK P G+ RL SL + L
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 88 GLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP 127
GL+ + L+ + LP+S++ L LR LS+ C L +P
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 38 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97
N ++LM NNI+ I ++ H L L L RN +++I F + L + L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133
Query: 98 DIEVLPSSVSD-LTNLRSLSLGWCRR----------LKRVPSXXXXXXXXXXXXXXTRIE 146
+ V+PS + L+ LR L W R RVPS ++E
Sbjct: 134 WLTVIPSGAFEYLSKLREL---WLRNNPIESIPSYAFNRVPS-----LMRLDLGELKKLE 185
Query: 147 EVPEG-MEMLENLSHLYLSSLQLKKFP 172
+ EG E L NL +L L +K P
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDMP 212
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 28/154 (18%)
Query: 38 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIP-ECFFVHMHGLKVVNLSS 96
E LE + +N++++ S S + + + L + R+ F + L+V+ ++
Sbjct: 396 EQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 97 TDIE--VLPSSVSDLTNLRSLSLGWCRRLKRVPSXXXXXXXXXXXXXXTRIEEV-PEGME 153
+ LP ++L NL L L C+ +E++ P
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQ-----------------------LEQLSPTAFN 491
Query: 154 MLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
L +L L ++S QLK P GI RL SL K+ L
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
Query: 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI- 99
+R+ L N I +P+ C L+ L L N L RI F + L+ ++LS
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQL 92
Query: 100 -EVLPSSVSDLTNLRSLSLGWCRRLKRVPSX-XXXXXXXXXXXXXTRIEEVPEG-MEMLE 156
V P++ L L +L L C + P ++ +P+ L
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 157 NLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
NL+HL+L ++ P L SL +L L
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLL 183
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 143 TRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLS 188
T++E P + L NL LY +S +L P G+ +L L +L L+
Sbjct: 46 TKLE--PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
Query: 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI- 99
+R+ L N I +P+ C L+ L L N L RI F + L+ ++LS
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 100 -EVLPSSVSDLTNLRSLSLGWCRRLKRVPSX-XXXXXXXXXXXXXTRIEEVPEG-MEMLE 156
V P++ L L +L L C + P ++ +P+ L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 157 NLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
NL+HL+L ++ P L SL +L L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 155 LENLSHLYLSSLQLKKFPAGILPRLRSLYKLKL 187
L NL L L + QLK P GI RL SL K+ L
Sbjct: 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 144 RIEEVPEGM-EMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGN 191
++ +P G+ + L L+HL L QLK P G+ L+SL + L F N
Sbjct: 75 QLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYL-FNN 122
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 64 LSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRSLSLGWCRR 122
L TL L R LQ + F + L+ + L +++ LP ++ DL NL L L R
Sbjct: 106 LHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHG-NR 163
Query: 123 LKRVP--SXXXXXXXXXXXXXXTRIEEV-PEGMEMLENLSHLYLSSLQLKKFPAGILPRL 179
+ VP + + V P L L LYL + L PA +L L
Sbjct: 164 IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPL 223
Query: 180 RSLYKLKLS 188
RSL L+L+
Sbjct: 224 RSLQYLRLN 232
>pdb|4IOY|X Chain X, Structure Of The Spt16 Middle Domain Reveals Functional
Features Of The Histone Chaperone Fact
Length = 285
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 64 LSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD--IEVLPSSVSDL 109
L + ++ N + +R+P F+H +G++ + TD I++L S++ +L
Sbjct: 14 LDQIFVRPNPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNL 61
>pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I
pdb|3H37|B Chain B, The Structure Of Cca-Adding Enzyme Apo Form I
Length = 441
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 27 LLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECF 82
LEF ++ W+E +R SL RN I EI H E + LL+ +R+P F
Sbjct: 287 FLEFYDDESWKEVRDRYSLRRNLINEI-----RHVEKSAPALLEXLS--ERVPASF 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,222,350
Number of Sequences: 62578
Number of extensions: 457841
Number of successful extensions: 1274
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1179
Number of HSP's gapped (non-prelim): 104
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)