Query 012249
Match_columns 467
No_of_seqs 198 out of 2663
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 00:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 8.3E-25 1.8E-29 240.2 21.6 377 1-420 490-910 (1153)
2 PLN00113 leucine-rich repeat r 99.9 7.3E-24 1.6E-28 232.1 18.8 193 21-218 146-344 (968)
3 PLN00113 leucine-rich repeat r 99.9 7.9E-24 1.7E-28 231.8 17.7 193 20-219 123-321 (968)
4 KOG4658 Apoptotic ATPase [Sign 99.9 8.4E-23 1.8E-27 213.8 14.0 387 1-461 483-883 (889)
5 PLN03210 Resistant to P. syrin 99.8 3.2E-20 6.8E-25 204.2 20.7 345 30-420 580-947 (1153)
6 KOG4194 Membrane glycoprotein 99.8 1.2E-21 2.5E-26 186.6 3.5 339 39-414 79-427 (873)
7 KOG4194 Membrane glycoprotein 99.8 2.7E-19 5.9E-24 170.6 12.8 362 20-421 36-409 (873)
8 KOG0444 Cytoskeletal regulator 99.8 2.6E-21 5.6E-26 185.6 -4.8 334 20-419 37-378 (1255)
9 KOG0444 Cytoskeletal regulator 99.8 4.5E-21 9.7E-26 184.0 -5.6 337 29-443 23-370 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 5E-20 1.1E-24 168.2 -6.4 194 20-221 73-267 (565)
11 KOG0617 Ras suppressor protein 99.6 3.6E-17 7.9E-22 132.9 -5.2 165 34-204 29-195 (264)
12 KOG0618 Serine/threonine phosp 99.6 4.2E-16 9E-21 156.6 -0.4 358 19-418 49-466 (1081)
13 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.4E-21 130.1 -4.4 153 60-219 31-186 (264)
14 KOG0472 Leucine-rich repeat pr 99.5 1.7E-16 3.8E-21 145.3 -7.2 176 38-220 45-220 (565)
15 PRK15387 E3 ubiquitin-protein 99.5 2.1E-12 4.6E-17 133.4 17.5 170 19-218 205-374 (788)
16 KOG0618 Serine/threonine phosp 99.4 2.1E-15 4.5E-20 151.6 -5.8 390 25-443 8-460 (1081)
17 KOG4658 Apoptotic ATPase [Sign 99.4 1.6E-13 3.5E-18 144.5 6.3 328 21-427 529-873 (889)
18 PRK15387 E3 ubiquitin-protein 99.4 4.5E-12 9.8E-17 131.0 15.1 155 39-220 202-356 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 3.8E-12 8.2E-17 132.2 12.4 153 20-191 183-336 (754)
20 KOG4237 Extracellular matrix p 99.4 7.1E-14 1.5E-18 128.2 -0.4 125 66-191 71-199 (498)
21 KOG4237 Extracellular matrix p 99.3 3.1E-13 6.7E-18 124.0 -1.1 242 18-270 49-357 (498)
22 PRK15370 E3 ubiquitin-protein 99.3 3.8E-11 8.2E-16 124.9 11.9 179 19-221 203-382 (754)
23 cd00116 LRR_RI Leucine-rich re 99.1 3.2E-11 6.9E-16 115.4 4.6 37 310-347 250-288 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 2.6E-11 5.6E-16 116.0 2.9 37 309-347 220-260 (319)
25 KOG0532 Leucine-rich repeat (L 99.0 1.6E-11 3.5E-16 117.9 -2.6 192 19-220 54-248 (722)
26 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.4E-14 93.1 5.7 121 38-163 19-147 (175)
27 KOG4341 F-box protein containi 98.9 3.1E-11 6.6E-16 112.0 -5.2 122 277-419 320-442 (483)
28 PF14580 LRR_9: Leucine-rich r 98.9 2.5E-09 5.3E-14 91.0 6.0 127 85-214 17-148 (175)
29 KOG3207 Beta-tubulin folding c 98.9 5.4E-10 1.2E-14 104.4 1.9 86 35-120 118-207 (505)
30 KOG3207 Beta-tubulin folding c 98.9 4.3E-10 9.4E-15 105.0 1.1 154 60-218 119-283 (505)
31 KOG1259 Nischarin, modulator o 98.8 6.5E-10 1.4E-14 99.0 -0.7 127 39-170 285-413 (490)
32 KOG0532 Leucine-rich repeat (L 98.8 1.5E-10 3.3E-15 111.3 -5.5 190 19-216 79-270 (722)
33 KOG2120 SCF ubiquitin ligase, 98.8 4.8E-10 1E-14 99.7 -2.7 188 133-389 185-375 (419)
34 COG4886 Leucine-rich repeat (L 98.8 9.9E-09 2.1E-13 101.3 6.2 177 33-218 111-289 (394)
35 COG4886 Leucine-rich repeat (L 98.7 1.6E-08 3.4E-13 99.8 6.1 172 42-221 97-270 (394)
36 KOG1259 Nischarin, modulator o 98.7 1.7E-09 3.8E-14 96.3 -0.9 129 87-219 284-412 (490)
37 KOG4341 F-box protein containi 98.6 1.9E-09 4.2E-14 100.2 -3.3 137 278-443 295-434 (483)
38 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.3E-12 66.4 3.1 59 39-98 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.4 4.2E-07 9.1E-12 63.4 3.6 58 134-191 2-60 (61)
40 PLN03150 hypothetical protein; 98.3 1.9E-06 4.1E-11 89.5 8.8 103 112-216 420-525 (623)
41 PLN03150 hypothetical protein; 98.3 2.4E-06 5.1E-11 88.8 9.0 104 88-191 419-526 (623)
42 KOG2120 SCF ubiquitin ligase, 98.2 6.9E-08 1.5E-12 86.2 -4.0 154 62-217 185-349 (419)
43 KOG1909 Ran GTPase-activating 98.2 1.8E-07 4E-12 85.4 -2.2 181 36-218 90-310 (382)
44 KOG3665 ZYG-1-like serine/thre 98.1 1.1E-06 2.4E-11 91.0 3.0 103 39-143 123-230 (699)
45 KOG1859 Leucine-rich repeat pr 98.1 7.8E-08 1.7E-12 95.6 -7.1 126 88-218 165-291 (1096)
46 KOG3665 ZYG-1-like serine/thre 98.0 4.1E-06 9E-11 86.9 4.2 104 63-167 123-231 (699)
47 KOG1909 Ran GTPase-activating 98.0 2.8E-06 6.2E-11 77.8 2.5 87 60-146 28-133 (382)
48 PF12799 LRR_4: Leucine Rich r 97.9 1.9E-05 4.1E-10 50.5 3.7 41 133-173 1-41 (44)
49 KOG0531 Protein phosphatase 1, 97.8 4.5E-06 9.8E-11 82.7 -0.7 175 32-218 89-267 (414)
50 PF12799 LRR_4: Leucine Rich r 97.7 5.6E-05 1.2E-09 48.3 3.9 33 88-120 2-34 (44)
51 KOG1859 Leucine-rich repeat pr 97.7 9.1E-07 2E-11 88.2 -6.9 156 31-192 102-291 (1096)
52 PRK15386 type III secretion pr 97.7 0.0002 4.3E-09 68.9 8.6 71 36-119 50-121 (426)
53 KOG0531 Protein phosphatase 1, 97.6 1.4E-05 3.1E-10 79.2 0.0 134 60-197 70-203 (414)
54 KOG2982 Uncharacterized conser 97.4 4.2E-05 9.1E-10 68.8 0.8 62 156-218 199-261 (418)
55 KOG1644 U2-associated snRNP A' 97.4 0.0005 1.1E-08 58.6 7.1 100 62-165 42-149 (233)
56 KOG2982 Uncharacterized conser 97.4 6.5E-05 1.4E-09 67.6 1.9 66 152-218 93-158 (418)
57 KOG4579 Leucine-rich repeat (L 97.4 2.6E-05 5.6E-10 62.0 -1.3 88 85-173 51-140 (177)
58 KOG1644 U2-associated snRNP A' 97.3 0.00047 1E-08 58.8 5.4 103 87-190 42-150 (233)
59 KOG1947 Leucine rich repeat pr 97.2 9.3E-05 2E-09 75.0 1.0 111 108-218 186-307 (482)
60 PRK15386 type III secretion pr 97.2 0.0012 2.6E-08 63.7 7.9 73 60-144 50-123 (426)
61 PF13306 LRR_5: Leucine rich r 97.2 0.0013 2.7E-08 53.5 7.0 58 35-95 9-66 (129)
62 KOG1947 Leucine rich repeat pr 97.1 0.00035 7.5E-09 70.8 2.9 134 81-214 182-329 (482)
63 KOG4579 Leucine-rich repeat (L 96.9 0.00027 5.9E-09 56.4 0.1 88 61-150 52-140 (177)
64 KOG2123 Uncharacterized conser 96.8 6.1E-05 1.3E-09 67.2 -4.1 79 134-216 20-98 (388)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0038 8.1E-08 50.6 6.2 123 53-183 3-129 (129)
66 KOG2123 Uncharacterized conser 96.7 0.00011 2.4E-09 65.6 -3.8 98 37-139 18-123 (388)
67 COG5238 RNA1 Ran GTPase-activa 96.3 0.0059 1.3E-07 54.7 4.6 87 60-146 28-133 (388)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0015 3.3E-08 58.1 0.9 12 109-120 64-75 (260)
69 COG5238 RNA1 Ran GTPase-activa 95.9 0.023 4.9E-07 51.1 6.4 170 35-219 27-227 (388)
70 KOG2739 Leucine-rich acidic nu 95.1 0.014 3E-07 52.1 2.4 79 109-190 42-126 (260)
71 PF00560 LRR_1: Leucine Rich R 95.1 0.012 2.5E-07 31.2 1.2 21 134-154 1-21 (22)
72 KOG3864 Uncharacterized conser 94.9 0.0032 7E-08 53.8 -2.2 75 329-418 117-191 (221)
73 PF00560 LRR_1: Leucine Rich R 93.8 0.02 4.2E-07 30.3 0.2 18 89-106 2-19 (22)
74 PF13504 LRR_7: Leucine rich r 93.6 0.049 1.1E-06 26.7 1.4 17 403-420 1-17 (17)
75 KOG3864 Uncharacterized conser 93.3 0.024 5.3E-07 48.6 0.0 39 313-352 127-166 (221)
76 smart00367 LRR_CC Leucine-rich 88.8 0.21 4.6E-06 27.5 0.9 18 402-419 1-18 (26)
77 smart00370 LRR Leucine-rich re 87.3 0.5 1.1E-05 25.9 1.9 20 156-175 2-21 (26)
78 smart00369 LRR_TYP Leucine-ric 87.3 0.5 1.1E-05 25.9 1.9 20 156-175 2-21 (26)
79 smart00370 LRR Leucine-rich re 86.6 0.73 1.6E-05 25.2 2.3 20 87-106 2-21 (26)
80 smart00369 LRR_TYP Leucine-ric 86.6 0.73 1.6E-05 25.2 2.3 20 87-106 2-21 (26)
81 KOG0473 Leucine-rich repeat pr 81.9 0.035 7.5E-07 48.8 -6.6 82 60-144 40-122 (326)
82 KOG0473 Leucine-rich repeat pr 80.1 0.04 8.6E-07 48.4 -6.9 86 33-121 37-122 (326)
83 smart00364 LRR_BAC Leucine-ric 60.8 5.7 0.00012 21.9 1.2 16 134-149 3-18 (26)
84 PF13516 LRR_6: Leucine Rich r 56.9 6.1 0.00013 21.0 0.9 14 133-146 2-15 (24)
85 smart00365 LRR_SD22 Leucine-ri 49.6 15 0.00032 20.3 1.7 15 156-170 2-16 (26)
86 KOG4308 LRR-containing protein 49.1 0.29 6.2E-06 49.2 -9.1 180 40-221 89-305 (478)
87 KOG4308 LRR-containing protein 47.1 1.1 2.4E-05 45.1 -5.3 85 84-168 112-216 (478)
88 smart00368 LRR_RI Leucine rich 43.1 21 0.00046 19.8 1.8 14 87-100 2-15 (28)
89 PF05725 FNIP: FNIP Repeat; I 28.3 74 0.0016 19.9 2.7 13 307-319 30-42 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=8.3e-25 Score=240.22 Aligned_cols=377 Identities=19% Similarity=0.273 Sum_probs=231.6
Q ss_pred ChhhHHHHHHHhhhcCC-------ceEEEc--------CC---C----------cc---cCCcCccCCCCccEEEeecCC
Q 012249 1 MHDLIRDMALRITSKSP-------LFMVKA--------GL---R----------LL---EFPGEQEWEENLERVSLMRNN 49 (467)
Q Consensus 1 mhdl~~dl~~~~~~~~~-------~~~~~~--------~~---~----------l~---~~~~~~~~l~~l~~L~l~~~~ 49 (467)
|||++||||+++++++. +.+... +. . .. --+.+|..+++|+.|.+..+.
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999999987652 111100 00 0 00 012246678899999887553
Q ss_pred Cc-------ccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCC
Q 012249 50 IE-------EIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRR 122 (467)
Q Consensus 50 ~~-------~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 122 (467)
.. .+|..+..-.++||.|++.++. ...+|..+ ...+|+.|++.++.+..++..+..+++|++|++++|..
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~ 646 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCC
Confidence 21 3455443223569999999987 77788765 67899999999999999998899999999999999888
Q ss_pred CCcCCCccccCCccEEEccCC-cCccccccccCCCCCcEEeccCCC-CCCcCCccccCCCCCcEEEcccCCCcccccHHH
Q 012249 123 LKRVPSLARLLALQYLDLYDT-RIEEVPEGMEMLENLSHLYLSSLQ-LKKFPAGILPRLRSLYKLKLSFGNEALRETVEE 200 (467)
Q Consensus 123 ~~~~p~l~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 200 (467)
++.+|.+..+++|++|++++| .+..+|..++++++|+.|++++|. +..+|..+ ++++|+.|++++|......+ .
T Consensus 647 l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p--~ 722 (1153)
T PLN03210 647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFP--D 722 (1153)
T ss_pred cCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccc--c
Confidence 999999999999999999999 788999999999999999999985 68888764 79999999999885443322 1
Q ss_pred HHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccchhhhhhhcccc
Q 012249 201 AARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKETIVLLKDVQ 280 (467)
Q Consensus 201 l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 280 (467)
.. .+|+.|++..+.+..++... .+..+..|....... ...+..+... .......++.|+
T Consensus 723 --~~-~nL~~L~L~~n~i~~lP~~~-------~l~~L~~L~l~~~~~-~~l~~~~~~l----------~~~~~~~~~sL~ 781 (1153)
T PLN03210 723 --IS-TNISWLDLDETAIEEFPSNL-------RLENLDELILCEMKS-EKLWERVQPL----------TPLMTMLSPSLT 781 (1153)
T ss_pred --cc-CCcCeeecCCCccccccccc-------cccccccccccccch-hhcccccccc----------chhhhhccccch
Confidence 23 78899999887764433211 112222111100000 0000000000 000011233455
Q ss_pred eeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCch
Q 012249 281 CLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDED 360 (467)
Q Consensus 281 ~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 360 (467)
.|.+.++..+..++. ....+++ |+.|+|++|..++.++... .+++|+.|++++|..+..++.....-
T Consensus 782 ~L~Ls~n~~l~~lP~---------si~~L~~-L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~~~nL 848 (1153)
T PLN03210 782 RLFLSDIPSLVELPS---------SIQNLHK-LEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPDISTNI 848 (1153)
T ss_pred heeCCCCCCccccCh---------hhhCCCC-CCEEECCCCCCcCeeCCCC---CccccCEEECCCCCcccccccccccc
Confidence 555544433322110 1223445 6666666666555543221 45566666666665554432211000
Q ss_pred hhhhhccccc---c-ccccccccccccccccccccccccCCCccccCCcceEEEeCCCCccccC
Q 012249 361 TEKELATNTI---I-NTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLS 420 (467)
Q Consensus 361 ~~~~~~~~~~---~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp 420 (467)
..-.++...+ + +...+++|+.|++.+|.+++.++... ..+++|+.+.+.+|++|+.++
T Consensus 849 ~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 849 SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCccccccc
Confidence 0000000000 0 12267778888888888887776655 457778888888888777654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=7.3e-24 Score=232.11 Aligned_cols=193 Identities=26% Similarity=0.330 Sum_probs=134.4
Q ss_pred EEcCCCcc-cCCcCccCCCCccEEEeecCCCc-ccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 21 VKAGLRLL-EFPGEQEWEENLERVSLMRNNIE-EIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 21 ~~~~~~l~-~~~~~~~~l~~l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
..+++.+. .+|..++.+++|++|++++|.+. .+|..+ .++++|++|++++|.+...+|..+ +++++|++|++++|.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNN 223 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCc
Confidence 34444443 56777788888888888888776 455443 478888888888887665666654 778888888888887
Q ss_pred CC-CchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCc-cccccccCCCCCcEEeccCCCCC-CcCCc
Q 012249 99 IE-VLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIE-EVPEGMEMLENLSHLYLSSLQLK-KFPAG 174 (467)
Q Consensus 99 ~~-~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~ 174 (467)
+. .+|..++++++|++|++++|...+..| .++++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 76 677778888888888888876555666 6777788888888777665 46666777777777777777764 34433
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
+.++++|+.|++++|......+ ..+..+ ++|+.|+++.+..
T Consensus 304 -~~~l~~L~~L~l~~n~~~~~~~-~~~~~l-~~L~~L~L~~n~l 344 (968)
T PLN00113 304 -VIQLQNLEILHLFSNNFTGKIP-VALTSL-PRLQVLQLWSNKF 344 (968)
T ss_pred -HcCCCCCcEEECCCCccCCcCC-hhHhcC-CCCCEEECcCCCC
Confidence 3677777777777665543332 455666 6666666666554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=7.9e-24 Score=231.83 Aligned_cols=193 Identities=23% Similarity=0.363 Sum_probs=159.3
Q ss_pred EEEcCCCcc-cCCcCccCCCCccEEEeecCCCc-ccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 20 MVKAGLRLL-EFPGEQEWEENLERVSLMRNNIE-EIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 20 ~~~~~~~l~-~~~~~~~~l~~l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
+..+++++. .+|. ..+++|++|++++|.+. .+|..+ .++++|+.|++++|.+...+|..+ .++++|++|++++|
T Consensus 123 L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n 198 (968)
T PLN00113 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASN 198 (968)
T ss_pred EECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCC
Confidence 344444443 3343 45789999999999987 555554 589999999999998666777765 89999999999999
Q ss_pred CCC-CchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCc-cccccccCCCCCcEEeccCCCCC-CcCC
Q 012249 98 DIE-VLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIE-EVPEGMEMLENLSHLYLSSLQLK-KFPA 173 (467)
Q Consensus 98 ~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~ 173 (467)
.+. .+|..++++++|++|++++|.....+| .++++++|++|++++|.+. .+|..++++++|+.|++++|.+. .+|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 887 678999999999999999987777788 7999999999999999776 67888999999999999999884 5666
Q ss_pred ccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 174 GILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 174 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
.+ .++++|+.|++++|......+ ..+..+ ++|+.|+++.+...
T Consensus 279 ~l-~~l~~L~~L~Ls~n~l~~~~p-~~~~~l-~~L~~L~l~~n~~~ 321 (968)
T PLN00113 279 SI-FSLQKLISLDLSDNSLSGEIP-ELVIQL-QNLEILHLFSNNFT 321 (968)
T ss_pred hH-hhccCcCEEECcCCeeccCCC-hhHcCC-CCCcEEECCCCccC
Confidence 54 899999999999987655443 567889 99999999888764
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.89 E-value=8.4e-23 Score=213.82 Aligned_cols=387 Identities=27% Similarity=0.350 Sum_probs=232.5
Q ss_pred ChhhHHHHHHHhhh-----cCCceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCC-
Q 012249 1 MHDLIRDMALRITS-----KSPLFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNEN- 74 (467)
Q Consensus 1 mhdl~~dl~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~- 74 (467)
|||+|||+|.|+|+ ++. .++..+.++..+|....+ ..+|++++.++.+..++... .+++|++|-+.++..
T Consensus 483 mHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDW 558 (889)
T ss_pred eeHHHHHHHHHHhccccccccc-eEEECCcCccccccccch-hheeEEEEeccchhhccCCC--CCCccceEEEeecchh
Confidence 89999999999999 565 444444556666664444 58899999999988776654 678999999999963
Q ss_pred CCCCchhHhhcCCCCcEEEccCC-CCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCC-cCcccccc
Q 012249 75 LQRIPECFFVHMHGLKVVNLSST-DIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDT-RIEEVPEG 151 (467)
Q Consensus 75 ~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~-~~~~lp~~ 151 (467)
...++..+|..++.|++||+++| ....+|..++.+.+||||++++ +.+..+| ++++++.|.+|++..+ .+..+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccch
Confidence 56677777899999999999987 5568999999999999999998 5777888 7888888888888877 44455555
Q ss_pred ccCCCCCcEEeccCCCCCCcCCcc--ccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccC
Q 012249 152 MEMLENLSHLYLSSLQLKKFPAGI--LPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTD 229 (467)
Q Consensus 152 ~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~ 229 (467)
...|.+|++|.+.......-...+ +.++++|+.+....... .....+..+ .+|..+..
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---~~~e~l~~~-~~L~~~~~---------------- 697 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---LLLEDLLGM-TRLRSLLQ---------------- 697 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---HhHhhhhhh-HHHHHHhH----------------
Confidence 666778887777654411111100 12333333333322111 000111111 11111100
Q ss_pred CCCChhhhhhhhhcCCCccccccccccceeeeecCccccchhhhhhhcccceeeeeeccccccccccccccccccccc-C
Q 012249 230 GRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKETIVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIG-K 308 (467)
Q Consensus 230 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~-~ 308 (467)
.+. +..........++..+.+|+.|.+..+........+.+.. ... .
T Consensus 698 ---------~l~-~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~----------------------~~~~~ 745 (889)
T KOG4658|consen 698 ---------SLS-IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL----------------------IVLLC 745 (889)
T ss_pred ---------hhh-hcccccceeecccccccCcceEEEEcCCCchhhccccccc----------------------chhhh
Confidence 000 0000000111123333444444444443221111111111 011 2
Q ss_pred ccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhcccccc-ccccccccccc-cccc
Q 012249 309 FSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTII-NTVTLPRLKKL-RFYD 386 (467)
Q Consensus 309 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L-~l~~ 386 (467)
|+. +.++.+.+|...+.+.+. .-.|+|+.|.+..|..+++++...... ..+. ....|.++..+ .+.+
T Consensus 746 f~~-l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~~k~~-------~~l~~~i~~f~~~~~l~~~~~ 814 (889)
T KOG4658|consen 746 FPN-LSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPKLKAL-------LELKELILPFNKLEGLRMLCS 814 (889)
T ss_pred HHH-HHHHHhhccccccccchh---hccCcccEEEEecccccccCCCHHHHh-------hhcccEEecccccccceeeec
Confidence 555 777777777776664332 234567777777777777776554311 1111 12367777777 5777
Q ss_pred cccccccccCCCccccCCcceEEEeCCCCccccCCccCcccCCCCCCCCcceeeeehHHHhhhcccCchhhhhhh
Q 012249 387 LPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLSLSLPLLDHGQPSPPAALKVIKIEKELWESLDWDQANAKEVL 461 (467)
Q Consensus 387 ~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~~~~~~~~~L~~l~i~~~~~~~l~~~~~~~~~~~ 461 (467)
.+.+..+.... ..++.|+++.|..||+++.+|.....-. ..+.......-+.+|.+.++|++.+++..+
T Consensus 815 l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~~~~~i----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 815 LGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLLSTLTI----VGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred CCCCceeEecc--cCccchhheehhcCcccccCccccccce----eccccceeecCCccceeeEEehhhhhhhhc
Confidence 77777776666 5677799999999999999986432221 111111222222667788999998887766
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=3.2e-20 Score=204.24 Aligned_cols=345 Identities=20% Similarity=0.241 Sum_probs=211.0
Q ss_pred CCcCccCC-CCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC-CCCchhhhh
Q 012249 30 FPGEQEWE-ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD-IEVLPSSVS 107 (467)
Q Consensus 30 ~~~~~~~l-~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~~~~ 107 (467)
+|..+..+ ++||.|.+.++.+..+|..+ .+.+|+.|++.++. +..++..+ ..+++|++|+++++. +..+|. +.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~-l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSK-LEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcc-cccccccc-ccCCCCCEEECCCCCCcCcCCc-cc
Confidence 45555444 35788888777777777654 56778888888776 55566554 677888888887764 445653 67
Q ss_pred cCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCC-cCccccccccCCCCCcEEeccCCC-CCCcCCccccCCCCCcE
Q 012249 108 DLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDT-RIEEVPEGMEMLENLSHLYLSSLQ-LKKFPAGILPRLRSLYK 184 (467)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~ 184 (467)
.+++|++|++++|..+..+| .++++++|+.|++++| .++.+|..+ ++++|+.|++++|. +..+|. ..++|+.
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~ 729 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISW 729 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCe
Confidence 77888888888877777777 6778888888888877 677777655 67788888888775 344443 2356777
Q ss_pred EEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCC--CCChhhhhhhhhcCCCccccccccccceeeee
Q 012249 185 LKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDG--RGSKNYCLALSAHGMGGCLVTHLEVDKSVFLY 262 (467)
Q Consensus 185 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 262 (467)
|+++++..... +....+ ++|+.|.+..+.............. ......++.|...+......++.++..+.+|+
T Consensus 730 L~L~~n~i~~l---P~~~~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 730 LDLDETAIEEF---PSNLRL-ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred eecCCCccccc---cccccc-cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 77777643221 111245 6666666654322111100000000 00011222222222212223445566666777
Q ss_pred cCccccchhhhhh-----hcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhh
Q 012249 263 GCKICEIKETIVL-----LKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQ 337 (467)
Q Consensus 263 ~l~l~~~~~~~~~-----~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 337 (467)
.|.+.++.....+ +..|+.|.+.+|..+..+.. .+.+|+.|++.+ +.++.++. .+..++
T Consensus 806 ~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-------------~~~nL~~L~Ls~-n~i~~iP~--si~~l~ 869 (1153)
T PLN03210 806 HLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-------------ISTNISDLNLSR-TGIEEVPW--WIEKFS 869 (1153)
T ss_pred EEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-------------cccccCEeECCC-CCCccChH--HHhcCC
Confidence 7777665421111 34567777777766554221 123488888877 45555432 357789
Q ss_pred ccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCC-----------ccccCCcc
Q 012249 338 NLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNG-----------VLVCNSLQ 406 (467)
Q Consensus 338 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----------~~~~~~L~ 406 (467)
+|+.|++.+|++++.++.... .+++|+.|.+.+|..+..+..... ...+|+..
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~----------------~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~ 933 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNIS----------------KLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTV 933 (1153)
T ss_pred CCCEEECCCCCCcCccCcccc----------------cccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchh
Confidence 999999999999998754332 789999999999999986643220 02355567
Q ss_pred eEEEeCCCCccccC
Q 012249 407 EIEVRRCPKLKRLS 420 (467)
Q Consensus 407 ~L~i~~C~~L~~lp 420 (467)
.+.+.+|.+|..-+
T Consensus 934 ~l~f~nC~~L~~~a 947 (1153)
T PLN03210 934 CINFINCFNLDQEA 947 (1153)
T ss_pred ccccccccCCCchh
Confidence 77888998876543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-21 Score=186.58 Aligned_cols=339 Identities=20% Similarity=0.192 Sum_probs=197.6
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCCCEEEc
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRSLSL 117 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l 117 (467)
..+.|++++|.+..+....|.++++|+.+++..|. ...+|... ....+|+.|+|.+|.|..+. +.+..++.||.||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 56788999888887666666688999999988886 77777643 45566888888888888663 56777888888888
Q ss_pred CCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcc
Q 012249 118 GWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEAL 194 (467)
Q Consensus 118 ~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 194 (467)
+.| .+..+| ++..-.++++|++++|.|+.+-.+ +.++.+|..|.++.|+++.+|..+|.++++|+.|++..|...-
T Consensus 157 SrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 885 566666 566667788888888888877543 7778888888888888888888887788888888888874432
Q ss_pred cccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccchhh--
Q 012249 195 RETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKET-- 272 (467)
Q Consensus 195 ~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-- 272 (467)
. ....|.++ ..|+.|.+..|+.....+ ..+-.+.+.+++.....--....-+|+.++..|+.|+++.+...
T Consensus 236 v-e~ltFqgL-~Sl~nlklqrN~I~kL~D-----G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 236 V-EGLTFQGL-PSLQNLKLQRNDISKLDD-----GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred e-hhhhhcCc-hhhhhhhhhhcCcccccC-----cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 2 22456677 777777776666543321 11112222222111000001112334667777888888776522
Q ss_pred ----hhhhcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCcc
Q 012249 273 ----IVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCN 348 (467)
Q Consensus 273 ----~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 348 (467)
.++...++.|.++.. .++.+. --....+.. |+.|.+++ +.++++ ..+.+..+++|+.|++++.
T Consensus 309 h~d~WsftqkL~~LdLs~N-~i~~l~--------~~sf~~L~~-Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N- 375 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSN-RITRLD--------EGSFRVLSQ-LEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSN- 375 (873)
T ss_pred ecchhhhcccceeEecccc-ccccCC--------hhHHHHHHH-hhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCC-
Confidence 122223333322211 111111 001112333 55555554 344443 3334455555555555541
Q ss_pred chhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCC
Q 012249 349 SIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCP 414 (467)
Q Consensus 349 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 414 (467)
.+.-.+ ++ +..... ++|+|++|.+.+ .+++.++..+. ..++.||+|++.+.+
T Consensus 376 ~ls~~I--ED-------aa~~f~---gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 376 ELSWCI--ED-------AAVAFN---GLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDNA 427 (873)
T ss_pred eEEEEE--ec-------chhhhc---cchhhhheeecC-ceeeecchhhh-ccCcccceecCCCCc
Confidence 221111 10 011122 566666666666 44665555442 235666666666553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.7e-19 Score=170.61 Aligned_cols=362 Identities=20% Similarity=0.179 Sum_probs=248.4
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCC--CCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPH--CEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
....+.+....|..... ..+.++.+...++.+....... .+..++|++++|. +..+....|.++++|+.+++.+|
T Consensus 36 vd~ga~~~~~cpa~c~c--~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N 112 (873)
T KOG4194|consen 36 VDAGAGDLSECPATCPC--NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN 112 (873)
T ss_pred cccCCCccccCCCcCCC--CceeeecCccccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc
Confidence 34444445566665443 4577888888777543322222 3456789999998 66666666799999999999999
Q ss_pred CCCCchhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCc
Q 012249 98 DIEVLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 98 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
.+..+|.......||+.|++..| .+..+. .+..+..|+.||++.|.++.+|.. +..-.++++|++++|+++.+..+
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 99999987777889999999996 455544 688999999999999999988754 66668999999999999998888
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCcccccccc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLE 254 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~ 254 (467)
.|.++.+|.+|.++.|.+... +...|.++ ++|+.|++..|.+.-. +...+.++..++.++.-......--.+.
T Consensus 192 ~F~~lnsL~tlkLsrNrittL-p~r~Fk~L-~~L~~LdLnrN~iriv-----e~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTL-PQRSFKRL-PKLESLDLNRNRIRIV-----EGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred cccccchheeeecccCccccc-CHHHhhhc-chhhhhhccccceeee-----hhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 888999999999999977554 45899999 9999999988876432 1222334444444322222222222344
Q ss_pred ccceeeeecCccccchhhhhh------hcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCcccc
Q 012249 255 VDKSVFLYGCKICEIKETIVL------LKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLF 328 (467)
Q Consensus 255 ~~~~~~L~~l~l~~~~~~~~~------~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 328 (467)
+..+..++.+++..+...... ...++.|.++.. .+..+. .-.. .|+++|+.|+++. +.++.+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih--------~d~W-sftqkL~~LdLs~-N~i~~l- 332 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIH--------IDSW-SFTQKLKELDLSS-NRITRL- 332 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheee--------cchh-hhcccceeEeccc-cccccC-
Confidence 667777788887776533221 123333333211 111110 1111 2455599999998 777776
Q ss_pred ccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCC-ccccCCcce
Q 012249 329 SLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNG-VLVCNSLQE 407 (467)
Q Consensus 329 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~L~~ 407 (467)
+.+.+..|..|++|+++. +.+..+-... + .++.+|++|+++...---.+...+. ...+++|++
T Consensus 333 ~~~sf~~L~~Le~LnLs~-Nsi~~l~e~a------------f---~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSH-NSIDHLAEGA------------F---VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ChhHHHHHHHhhhhcccc-cchHHHHhhH------------H---HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 556678899999999998 6777773222 2 2889999999987542222222221 134899999
Q ss_pred EEEeCCCCccccCC
Q 012249 408 IEVRRCPKLKRLSL 421 (467)
Q Consensus 408 L~i~~C~~L~~lp~ 421 (467)
|.+.+. ++|++|.
T Consensus 397 L~l~gN-qlk~I~k 409 (873)
T KOG4194|consen 397 LRLTGN-QLKSIPK 409 (873)
T ss_pred eeecCc-eeeecch
Confidence 999986 7898874
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=2.6e-21 Score=185.57 Aligned_cols=334 Identities=21% Similarity=0.246 Sum_probs=205.1
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCC-CCCCchhHhhcCCCCcEEEccCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNEN-LQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
+......+..+|...+.+++|++|++.+|++..+..... .++.||.+.+..|.. ...+|.++| +++.|.+||+++|+
T Consensus 37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNq 114 (1255)
T KOG0444|consen 37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS-DLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQ 114 (1255)
T ss_pred EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc-cchhhHHHhhhccccccCCCCchhc-ccccceeeecchhh
Confidence 344456667778777888888888888888776665544 788888888887764 234777775 77888888888888
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccc
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGIL 176 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l 176 (467)
+.+.|..+-.-+++-.|++++| .+..+| -+.++.-|-+||+++|.+..+|..+..+.+|+.|.+++|.+..+--..+
T Consensus 115 L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 8888887777888888888874 677777 3667788888888888888888888888888888888887644333224
Q ss_pred cCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCcccccccccc
Q 012249 177 PRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVD 256 (467)
Q Consensus 177 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~ 256 (467)
..+++|++|++++..-....-...+..+ .+|..++++.|++...++. +.
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp~vPec------------------------------ly 242 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLPIVPEC------------------------------LY 242 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCCcchHH------------------------------Hh
Confidence 5677777787777643333323456667 7777777777766443321 22
Q ss_pred ceeeeecCccccchh-----hhhhhcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccc
Q 012249 257 KSVFLYGCKICEIKE-----TIVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLR 331 (467)
Q Consensus 257 ~~~~L~~l~l~~~~~-----~~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 331 (467)
++.+|+.|+++++.. .......+++|.++... ++.++ .....++. |++|.+.+ ++++.-...+
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP---------~avcKL~k-L~kLy~n~-NkL~FeGiPS 310 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLP---------DAVCKLTK-LTKLYANN-NKLTFEGIPS 310 (1255)
T ss_pred hhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccch---------HHHhhhHH-HHHHHhcc-CcccccCCcc
Confidence 333455555555431 11222344444443221 11110 01223445 66665554 3333211112
Q ss_pred hHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEe
Q 012249 332 LLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVR 411 (467)
Q Consensus 332 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 411 (467)
..+.|.+|+.+...+ +.++-++... ..+++|+.|.+.. ..+..++... +-++.|+.|++.
T Consensus 311 GIGKL~~Levf~aan-N~LElVPEgl----------------cRC~kL~kL~L~~-NrLiTLPeaI--HlL~~l~vLDlr 370 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAAN-NKLELVPEGL----------------CRCVKLQKLKLDH-NRLITLPEAI--HLLPDLKVLDLR 370 (1255)
T ss_pred chhhhhhhHHHHhhc-cccccCchhh----------------hhhHHHHHhcccc-cceeechhhh--hhcCCcceeecc
Confidence 335566666665554 3333332221 2677777777765 4455566655 557777778877
Q ss_pred CCCCcccc
Q 012249 412 RCPKLKRL 419 (467)
Q Consensus 412 ~C~~L~~l 419 (467)
..|+|.--
T Consensus 371 eNpnLVMP 378 (1255)
T KOG0444|consen 371 ENPNLVMP 378 (1255)
T ss_pred CCcCccCC
Confidence 77777543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=4.5e-21 Score=183.98 Aligned_cols=337 Identities=21% Similarity=0.274 Sum_probs=172.3
Q ss_pred cCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCC--Cchhhh
Q 012249 29 EFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE--VLPSSV 106 (467)
Q Consensus 29 ~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~l~~~~ 106 (467)
.+|.....+++++.|.+....+..+|.... .|.+|..|++..|.. ..+...+ ..++.||.+.+..|++. .+|..+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~-~lqkLEHLs~~HN~L-~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELS-RLQKLEHLSMAHNQL-ISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHH-HHhhhhhhhhhhhhh-Hhhhhhh-ccchhhHHHhhhccccccCCCCchh
Confidence 445555555666666666666666655543 566666666666652 2222222 45566666666666555 556666
Q ss_pred hcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCcE
Q 012249 107 SDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYK 184 (467)
Q Consensus 107 ~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 184 (467)
.++..|..|+++.| .++..| .+..-+++..|++++|+|.++|.. +-+++-|-.|+++.|++..+|+.+ +++.+|++
T Consensus 100 F~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RRLSMLQT 177 (1255)
T ss_pred cccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-HHHhhhhh
Confidence 66666666666663 455555 555666666666666666666654 345666666666666666666665 66666666
Q ss_pred EEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecC
Q 012249 185 LKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGC 264 (467)
Q Consensus 185 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l 264 (467)
|.+++|.. .......+..+ +.|++|.+++..-. ...++.++..+.+|.++
T Consensus 178 L~Ls~NPL-~hfQLrQLPsm-tsL~vLhms~TqRT----------------------------l~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 178 LKLSNNPL-NHFQLRQLPSM-TSLSVLHMSNTQRT----------------------------LDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hhcCCChh-hHHHHhcCccc-hhhhhhhcccccch----------------------------hhcCCCchhhhhhhhhc
Confidence 66665522 22233444444 55555555443211 01233345555566777
Q ss_pred ccccchhhhhhhc------ccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhhc
Q 012249 265 KICEIKETIVLLK------DVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQN 338 (467)
Q Consensus 265 ~l~~~~~~~~~~~------~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 338 (467)
+++.+... ..|. .+.+|.+++.. ++.+. ...+..- +|+.|.++. +.++.+|. .+..|++
T Consensus 228 DlS~N~Lp-~vPecly~l~~LrrLNLS~N~-iteL~---------~~~~~W~-~lEtLNlSr-NQLt~LP~--avcKL~k 292 (1255)
T KOG0444|consen 228 DLSENNLP-IVPECLYKLRNLRRLNLSGNK-ITELN---------MTEGEWE-NLETLNLSR-NQLTVLPD--AVCKLTK 292 (1255)
T ss_pred cccccCCC-cchHHHhhhhhhheeccCcCc-eeeee---------ccHHHHh-hhhhhcccc-chhccchH--HHhhhHH
Confidence 77665532 1222 22333222211 01000 0011111 255555554 33333321 2234444
Q ss_pred cceeeeCCcc-chhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCcc
Q 012249 339 LKVLAVISCN-SIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLK 417 (467)
Q Consensus 339 L~~L~l~~c~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~ 417 (467)
|+.|.+.+.. ..+.++.. .+.+.+|+.+...+ ..++-++.+. ..|+.|++|.+. |.+|.
T Consensus 293 L~kLy~n~NkL~FeGiPSG----------------IGKL~~Levf~aan-N~LElVPEgl--cRC~kL~kL~L~-~NrLi 352 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSG----------------IGKLIQLEVFHAAN-NKLELVPEGL--CRCVKLQKLKLD-HNRLI 352 (1255)
T ss_pred HHHHHhccCcccccCCccc----------------hhhhhhhHHHHhhc-cccccCchhh--hhhHHHHHhccc-cccee
Confidence 4444443311 01111110 11334444444333 3455555554 568889999886 77899
Q ss_pred ccCCccCcccCCCCCCCCcceeeeeh
Q 012249 418 RLSLSLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 418 ~lp~~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
.+|+++-.+. .|+++++.
T Consensus 353 TLPeaIHlL~--------~l~vLDlr 370 (1255)
T KOG0444|consen 353 TLPEAIHLLP--------DLKVLDLR 370 (1255)
T ss_pred echhhhhhcC--------Ccceeecc
Confidence 9999875554 67777665
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=5e-20 Score=168.24 Aligned_cols=194 Identities=23% Similarity=0.338 Sum_probs=136.3
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+..+++.+.+.|++++.+..+..++.+.|.+.++|..+. ...+++.++++.|. ...+++++ +++..|..++..+|++
T Consensus 73 l~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~-s~~~l~~l~~s~n~-~~el~~~i-~~~~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 73 LNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIG-SLISLVKLDCSSNE-LKELPDSI-GRLLDLEDLDATNNQI 149 (565)
T ss_pred EEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHh-hhhhhhhhhccccc-eeecCchH-HHHhhhhhhhcccccc
Confidence 455567777778777777777778888887777777765 67778888888886 56666665 6777788888888888
Q ss_pred CCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccC
Q 012249 100 EVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPR 178 (467)
Q Consensus 100 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 178 (467)
..+|.+++.+..|..+++.+| .++..| ...+++.|++||...|-++.+|..++.|.+|..|++..|++..+|. |++
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~g 226 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPG 226 (565)
T ss_pred ccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCc
Confidence 888888888888888888875 444444 5555777777877777777777777777777777777777777774 467
Q ss_pred CCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccch
Q 012249 179 LRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDF 221 (467)
Q Consensus 179 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 221 (467)
|..|.+|++..|.... .+.+...++ .++.+|++..+.+..+
T Consensus 227 cs~L~Elh~g~N~i~~-lpae~~~~L-~~l~vLDLRdNklke~ 267 (565)
T KOG0472|consen 227 CSLLKELHVGENQIEM-LPAEHLKHL-NSLLVLDLRDNKLKEV 267 (565)
T ss_pred cHHHHHHHhcccHHHh-hHHHHhccc-ccceeeeccccccccC
Confidence 7777777666653322 222334455 6666666666655443
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=3.6e-17 Score=132.91 Aligned_cols=165 Identities=24% Similarity=0.361 Sum_probs=138.7
Q ss_pred ccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCC
Q 012249 34 QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLR 113 (467)
Q Consensus 34 ~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~ 113 (467)
...+.++++|.+++|.++.+|+.+. .+.+|+.|++.+|+ +..+|.++ +.+++||.|++.-|.+..+|.+++.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia-~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHH-Hhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence 3345688899999999998888876 89999999999997 88888887 889999999999999989999999999999
Q ss_pred EEEcCCCCCCC-cCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCC
Q 012249 114 SLSLGWCRRLK-RVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 114 ~L~l~~~~~~~-~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
.|++.+|..-+ .+| .+..+..|+.|.++++.+..+|..++++++|+.|.++.|.+-++|+++ +.++.|++|++.+|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkei-g~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEI-GDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHH-HHHHHHHHHhcccce
Confidence 99999864333 466 577888899999999999999999999999999999999999999997 999999999999886
Q ss_pred CcccccHHHHHhh
Q 012249 192 EALRETVEEAARL 204 (467)
Q Consensus 192 ~~~~~~~~~l~~l 204 (467)
..... .+++.+
T Consensus 185 l~vlp--pel~~l 195 (264)
T KOG0617|consen 185 LTVLP--PELANL 195 (264)
T ss_pred eeecC--hhhhhh
Confidence 54332 344444
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=4.2e-16 Score=156.58 Aligned_cols=358 Identities=19% Similarity=0.218 Sum_probs=182.7
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+..+++.+..+|..+..+.+|+.+.++.|.+..+|.... ++.+|+.+++.+|. ...+|.++ ..+++|++|++++|+
T Consensus 49 ~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~-~~~~l~~lnL~~n~-l~~lP~~~-~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 49 SLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCS-NMRNLQYLNLKNNR-LQSLPASI-SELKNLQYLDLSFNH 125 (1081)
T ss_pred EeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhh-hhhcchhheeccch-hhcCchhH-Hhhhcccccccchhc
Confidence 3556667777777777777778888887777777776554 67778888887776 66777765 677788888888887
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCC--------------------CccccCCccEEEccCCcCccccccccCCCCC
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVP--------------------SLARLLALQYLDLYDTRIEEVPEGMEMLENL 158 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--------------------~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L 158 (467)
+..+|..+..+..+..+..++|..+..++ ++..+.+ .|++.+|.+.. ..+.++.+|
T Consensus 126 f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l 201 (1081)
T KOG0618|consen 126 FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANL 201 (1081)
T ss_pred cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccch
Confidence 77777666666666666666552222222 1222222 35555443331 123333333
Q ss_pred cEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCC------
Q 012249 159 SHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRG------ 232 (467)
Q Consensus 159 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~------ 232 (467)
+.+....|.+..+. -.-++++.|+.+.|...... .-. ..++|+.++++.+.+...++|+.....+.
T Consensus 202 ~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~---~~p-~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 202 EVLHCERNQLSELE----ISGPSLTALYADHNPLTTLD---VHP-VPLNLQYLDISHNNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhhhhhhcccceEE----ecCcchheeeeccCcceeec---ccc-ccccceeeecchhhhhcchHHHHhcccceEecccc
Confidence 33333333322111 11222333333333221100 000 11344444554444444444443322221
Q ss_pred -----------ChhhhhhhhhcCCCccccccccccceeeeecCccccchhhhhhhcc-------cceeeeeecccccccc
Q 012249 233 -----------SKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKETIVLLKD-------VQCLQMFEVDEVTSLN 294 (467)
Q Consensus 233 -----------~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-------l~~L~~~~~~~l~~l~ 294 (467)
....+..+. ...-....++....+..+|+.|++..+....-+... +..|.... ..+..+.
T Consensus 274 N~l~~lp~ri~~~~~L~~l~-~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp 351 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLS-AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLP 351 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHH-hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh-ccccccc
Confidence 122222221 111122234555566778888888776532111111 11111110 0111111
Q ss_pred cccc----------------cccccccccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccC
Q 012249 295 DVLP----------------RELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVED 358 (467)
Q Consensus 295 ~~~~----------------~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 358 (467)
.... .+..|+....+++ |+.|.+++ +.++.+ |-..+.+++.|+.|.+++ +.++.++...
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h-LKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSG-NkL~~Lp~tv- 426 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKH-LKVLHLSY-NRLNSF-PASKLRKLEELEELNLSG-NKLTTLPDTV- 426 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccc-eeeeeecc-cccccC-CHHHHhchHHhHHHhccc-chhhhhhHHH-
Confidence 0000 0013555667777 99999888 666654 555668888889999988 5777664211
Q ss_pred chhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCccc
Q 012249 359 EDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKR 418 (467)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 418 (467)
. .+++|++|..++ ..+..++.. ..++.|+.++|+ |.+|+.
T Consensus 427 ------------a---~~~~L~tL~ahs-N~l~~fPe~---~~l~qL~~lDlS-~N~L~~ 466 (1081)
T KOG0618|consen 427 ------------A---NLGRLHTLRAHS-NQLLSFPEL---AQLPQLKVLDLS-CNNLSE 466 (1081)
T ss_pred ------------H---hhhhhHHHhhcC-Cceeechhh---hhcCcceEEecc-cchhhh
Confidence 1 456666665555 334444422 345666666665 555555
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-16 Score=130.14 Aligned_cols=153 Identities=29% Similarity=0.423 Sum_probs=96.6
Q ss_pred CCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEE
Q 012249 60 HCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYL 138 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L 138 (467)
++.+...|.++.|. +..+|+.+ ..+++|++|++.+|+++.+|.+++.++.|+.|+++-| .+..+| ++|.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNK-l~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCc-eeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 45556666666665 55555555 5666666666666666666666666666666666653 455556 66666666666
Q ss_pred EccCCcCc--cccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccC
Q 012249 139 DLYDTRIE--EVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFS 216 (467)
Q Consensus 139 ~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 216 (467)
|++.+++. .+|..+..|+.|+.|+++.|.+.-+|..+ +++++||.|.+..|....- .++++.+ .+|++|.|.++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~l--pkeig~l-t~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSL--PKEIGDL-TRLRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhC--cHHHHHH-HHHHHHhcccc
Confidence 66666555 46666666666666666666666666665 6666666666666644332 2466666 66666666666
Q ss_pred Ccc
Q 012249 217 TLK 219 (467)
Q Consensus 217 ~~~ 219 (467)
.+.
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 553
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=1.7e-16 Score=145.33 Aligned_cols=176 Identities=24% Similarity=0.327 Sum_probs=146.2
Q ss_pred CCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEc
Q 012249 38 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSL 117 (467)
Q Consensus 38 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 117 (467)
..+..+.++.|.++.+...+. ++..+.+++++.|. ...+|+.+ +.+..++.++.++|++..+|..++...+|+.+++
T Consensus 45 v~l~~lils~N~l~~l~~dl~-nL~~l~vl~~~~n~-l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLK-NLACLTVLNVHDNK-LSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccHhhh-cccceeEEEeccch-hhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 456778888888887766655 88999999999998 66778776 7889999999999999999999999999999999
Q ss_pred CCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCccccc
Q 012249 118 GWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRET 197 (467)
Q Consensus 118 ~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 197 (467)
+.|....-.++++.+..|+.++..+|++.++|.+++++.++..+++.+|.++.+|+.. -+++.|++|+.-.|.. +..+
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~-i~m~~L~~ld~~~N~L-~tlP 199 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENH-IAMKRLKHLDCNSNLL-ETLP 199 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHH-HHHHHHHhcccchhhh-hcCC
Confidence 9965444444899999999999999999999999999999999999999999988876 4599999998877643 3333
Q ss_pred HHHHHhhhccCcEEEcccCCccc
Q 012249 198 VEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 198 ~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
..++.+ ..|+.|++..+.+..
T Consensus 200 -~~lg~l-~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 200 -PELGGL-ESLELLYLRRNKIRF 220 (565)
T ss_pred -hhhcch-hhhHHHHhhhccccc
Confidence 588888 888888887776543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=2.1e-12 Score=133.44 Aligned_cols=170 Identities=23% Similarity=0.244 Sum_probs=112.2
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+..++..+..+|..+. ++++.|++..|.++.+|. .+++|+.|++++|. +..+|. ..++|+.|++++|.
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~-LtsLP~----lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCc-cCcccC----cccccceeeccCCc
Confidence 55667777788887654 378888888888887764 35778888888886 556663 24678888888888
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccC
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPR 178 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 178 (467)
+..+|.. ...|+.|++++| .+..+|. .+++|+.|++++|.++.+|... .+|+.|++++|.+..+|..
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---- 340 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---- 340 (788)
T ss_pred hhhhhhc---hhhcCEEECcCC-ccccccc--cccccceeECCCCccccCCCCc---ccccccccccCcccccccc----
Confidence 7776643 255777888876 4566663 2356888888888777776533 3466677777777776642
Q ss_pred CCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 179 LRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 179 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
..+|+.|++++|.+..... +..+|+.|.+++|.+
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L 374 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRL 374 (788)
T ss_pred ccccceEecCCCccCCCCC------CCcccceehhhcccc
Confidence 2467777877775543211 114555566655543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=2.1e-15 Score=151.63 Aligned_cols=390 Identities=22% Similarity=0.229 Sum_probs=181.3
Q ss_pred CCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchh
Q 012249 25 LRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPS 104 (467)
Q Consensus 25 ~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 104 (467)
..+.-||..+-.-..+..+++..|.+-..|-.....+-+|+.|++++|. ....|..+ ..+.+|+.|.++.|.+.++|.
T Consensus 8 ~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~-~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~ 85 (1081)
T KOG0618|consen 8 EQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ-ISSFPIQI-TLLSHLRQLNLSRNYIRSVPS 85 (1081)
T ss_pred ccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccc-cccCCchh-hhHHHHhhcccchhhHhhCch
Confidence 3344444433332234445554444333221111123336666666665 44444433 455566666666666666665
Q ss_pred hhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEecc-------------------
Q 012249 105 SVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLS------------------- 164 (467)
Q Consensus 105 ~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~------------------- 164 (467)
...++.+|+++++.+ +.+...| ++..+++|++|+++.|.+..+|..+..+..+..+..+
T Consensus 86 s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~ 164 (1081)
T KOG0618|consen 86 SCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLR 164 (1081)
T ss_pred hhhhhhcchhheecc-chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhh
Confidence 556666666666655 3455555 5566666666666666555555544444444333333
Q ss_pred CCCC-CCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhh-------hhhccCCCCC---
Q 012249 165 SLQL-KKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNI-------YVKSTDGRGS--- 233 (467)
Q Consensus 165 ~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~-------~~~~~~~~~~--- 233 (467)
.+.+ ..++.++ ..+++ .|++..|.+. . ..+..+ .+|+.+....+....+.. ...+...+..
T Consensus 165 ~n~l~~~~~~~i-~~l~~--~ldLr~N~~~-~---~dls~~-~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~ 236 (1081)
T KOG0618|consen 165 LNVLGGSFLIDI-YNLTH--QLDLRYNEME-V---LDLSNL-ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV 236 (1081)
T ss_pred hhhcccchhcch-hhhhe--eeecccchhh-h---hhhhhc-cchhhhhhhhcccceEEecCcchheeeeccCcceeecc
Confidence 3332 2233222 33333 3555555443 1 122222 333333222222111000 0000000000
Q ss_pred ---hhhhhhhhhcCCCccccccccccceeeeecCccccchhhhh-----hhcccceeeeeeccccccccccccccccccc
Q 012249 234 ---KNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKETIV-----LLKDVQCLQMFEVDEVTSLNDVLPRELGLVN 305 (467)
Q Consensus 234 ---l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~ 305 (467)
-..+..+ .++-......++|+..+.+|+.+.+..+....- ....++.|.+..+.- +.+ -+.
T Consensus 237 ~p~p~nl~~~-dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yi---------p~~ 305 (1081)
T KOG0618|consen 237 HPVPLNLQYL-DISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYI---------PPF 305 (1081)
T ss_pred ccccccceee-ecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhC---------CCc
Confidence 0000000 011111123355667777777777666553211 112333333322211 110 111
Q ss_pred ccCccccccEEEEecCCCCccccccchHHhhh-ccceeeeCCccchhhhhcccCchh---------hhhhcccccccccc
Q 012249 306 IGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQ-NLKVLAVISCNSIEEIVAVEDEDT---------EKELATNTIINTVT 375 (467)
Q Consensus 306 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~---------~~~~~~~~~~~~~~ 375 (467)
...+.. |++|++.. +++..++... +..+. .|..++.+. ..+...+..++... -..++++.++.+..
T Consensus 306 le~~~s-L~tLdL~~-N~L~~lp~~~-l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 306 LEGLKS-LRTLDLQS-NNLPSLPDNF-LAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred ccccce-eeeeeehh-ccccccchHH-HhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 233566 88999987 5666654432 22222 244444443 34444433332211 22334455666678
Q ss_pred ccccccccccccccccccccCCCccccCCcceEEEeCCCCccccCCccCcccCCC--------------CCCCCcceeee
Q 012249 376 LPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLSLSLPLLDHGQ--------------PSPPAALKVIK 441 (467)
Q Consensus 376 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~~~--------------~~~~~~L~~l~ 441 (467)
+++||.|.+.. ..+..++...- ..++.||+|.++|. +|+.||..+......+ ....|.|+.++
T Consensus 382 ~~hLKVLhLsy-NrL~~fpas~~-~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSY-NRLNSFPASKL-RKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecc-cccccCCHHHH-hchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence 99999999987 44666666542 45888888888886 6777776544433221 11445677777
Q ss_pred eh
Q 012249 442 IE 443 (467)
Q Consensus 442 i~ 443 (467)
+.
T Consensus 459 lS 460 (1081)
T KOG0618|consen 459 LS 460 (1081)
T ss_pred cc
Confidence 76
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.42 E-value=1.6e-13 Score=144.48 Aligned_cols=328 Identities=21% Similarity=0.281 Sum_probs=197.4
Q ss_pred EEcCCCcccCCcCccCCCCccEEEeecCC--CcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 21 VKAGLRLLEFPGEQEWEENLERVSLMRNN--IEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 21 ~~~~~~l~~~~~~~~~l~~l~~L~l~~~~--~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
...++....++..... ++++.|-+..|. +..++...|..++.|++||+++|.-...+|.++ +++-+||+|+++++.
T Consensus 529 s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTG 606 (889)
T ss_pred EEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCC
Confidence 3334444555544333 479999999886 667777777789999999999998788899987 899999999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCc---cccccccCCCCCcEEeccCCCCCCcCCc
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIE---EVPEGMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
+..+|.+++++..|.+|++..+.....+| ....+++|++|.+...... ..-..+.++.+|+.+....... .+...
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~ 685 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED 685 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh
Confidence 99999999999999999999987777777 4566999999999876422 1223455666666666544333 11111
Q ss_pred cccCCCCCcE----EEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCcccc
Q 012249 175 ILPRLRSLYK----LKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLV 250 (467)
Q Consensus 175 ~l~~l~~L~~----L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 250 (467)
+ ..++.|.. +.+..+ ........+..+ .+|+.|.+..+....... ...+
T Consensus 686 l-~~~~~L~~~~~~l~~~~~--~~~~~~~~~~~l-~~L~~L~i~~~~~~e~~~--------~~~~--------------- 738 (889)
T KOG4658|consen 686 L-LGMTRLRSLLQSLSIEGC--SKRTLISSLGSL-GNLEELSILDCGISEIVI--------EWEE--------------- 738 (889)
T ss_pred h-hhhHHHHHHhHhhhhccc--ccceeecccccc-cCcceEEEEcCCCchhhc--------cccc---------------
Confidence 1 23333332 222221 112223467778 888998887776532210 0000
Q ss_pred ccccccceeeeecCccccchhhhhhhcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCcccccc
Q 012249 251 THLEVDKSVFLYGCKICEIKETIVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSL 330 (467)
Q Consensus 251 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 330 (467)
....+. ....+.++.+.+|..+..+. ...|+++|+.|.+..|+.+++. .
T Consensus 739 ---------~~~~~~---------~f~~l~~~~~~~~~~~r~l~-----------~~~f~~~L~~l~l~~~~~~e~~--i 787 (889)
T KOG4658|consen 739 ---------SLIVLL---------CFPNLSKVSILNCHMLRDLT-----------WLLFAPHLTSLSLVSCRLLEDI--I 787 (889)
T ss_pred ---------ccchhh---------hHHHHHHHHhhccccccccc-----------hhhccCcccEEEEecccccccC--C
Confidence 000000 01122333333443333221 1234555999999999988874 3
Q ss_pred chHHhhhccceeeeCCccchhhh---hcccCchhhhhhccccccc-cccccccccccccccccccccccCCCccccCCcc
Q 012249 331 RLLPALQNLKVLAVISCNSIEEI---VAVEDEDTEKELATNTIIN-TVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQ 406 (467)
Q Consensus 331 ~~~~~l~~L~~L~l~~c~~l~~l---~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 406 (467)
+....+..++.+.+.. ...... ...++ . .++-+ -..++.|+.+.+..||++. .+|.+.
T Consensus 788 ~~~k~~~~l~~~i~~f-~~~~~l~~~~~l~~---l-----~~i~~~~l~~~~l~~~~ve~~p~l~---------~~P~~~ 849 (889)
T KOG4658|consen 788 PKLKALLELKELILPF-NKLEGLRMLCSLGG---L-----PQLYWLPLSFLKLEELIVEECPKLG---------KLPLLS 849 (889)
T ss_pred CHHHHhhhcccEEecc-cccccceeeecCCC---C-----ceeEecccCccchhheehhcCcccc---------cCcccc
Confidence 3334554555433322 122222 11110 0 00000 0134445555555555543 478889
Q ss_pred eEEEeCC-CCccccCCc--cCccc
Q 012249 407 EIEVRRC-PKLKRLSLS--LPLLD 427 (467)
Q Consensus 407 ~L~i~~C-~~L~~lp~~--~~~l~ 427 (467)
++.+.+| ++++.+|.+ +...+
T Consensus 850 ~~~i~~~~~~~~~~~~~~~~~~v~ 873 (889)
T KOG4658|consen 850 TLTIVGCEEKLKEYPDGEWLEGVY 873 (889)
T ss_pred ccceeccccceeecCCccceeeEE
Confidence 9999997 889999987 44444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=4.5e-12 Score=131.00 Aligned_cols=155 Identities=20% Similarity=0.223 Sum_probs=113.8
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcC
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLG 118 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 118 (467)
+-..|+++.+.++.+|..+. ++|+.|++..|. +..+|. ..++|++|++++|.+..+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~-Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh---cCCCEEEccCCc-CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 45678888888888887653 478999999987 666774 357899999999998888743 4688899998
Q ss_pred CCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccH
Q 012249 119 WCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETV 198 (467)
Q Consensus 119 ~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 198 (467)
+| .+..+|. ...+|+.|++++|.++.+|.. +++|+.|++++|.+..+|... .+|+.|++++|....
T Consensus 271 ~N-~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp----~~L~~L~Ls~N~L~~---- 336 (788)
T PRK15387 271 SN-PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP----SELCKLWAYNNQLTS---- 336 (788)
T ss_pred CC-chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc----ccccccccccCcccc----
Confidence 86 4566663 225688899999988888753 467999999999888877532 356777788775532
Q ss_pred HHHHhhhccCcEEEcccCCccc
Q 012249 199 EEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 199 ~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
+..+..+|+.|++++|.+..
T Consensus 337 --LP~lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 337 --LPTLPSGLQELSVSDNQLAS 356 (788)
T ss_pred --ccccccccceEecCCCccCC
Confidence 11232578888988877643
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=3.8e-12 Score=132.24 Aligned_cols=153 Identities=25% Similarity=0.409 Sum_probs=77.9
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...+.++..+|..+. ++++.|++++|.++.+|..++ ++|+.|++++|. +..+|..+. ..|+.|++++|.+
T Consensus 183 L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~-LtsLP~~l~---~~L~~L~Ls~N~L 253 (754)
T PRK15370 183 LRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQ-LTSIPATLP---DTIQEMELSINRI 253 (754)
T ss_pred EEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCc-cccCChhhh---ccccEEECcCCcc
Confidence 4444445555554332 355666666666665554432 356666666655 444554321 2456666666665
Q ss_pred CCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccC
Q 012249 100 EVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPR 178 (467)
Q Consensus 100 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 178 (467)
..+|..+. .+|++|++++| .+..+| .+. .+|++|++++|.++.+|..+. ++|+.|++++|.+..+|..+
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--- 323 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL--- 323 (754)
T ss_pred CcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc---
Confidence 55554443 35566666553 344444 222 355666666665555554332 34555555555555554432
Q ss_pred CCCCcEEEcccCC
Q 012249 179 LRSLYKLKLSFGN 191 (467)
Q Consensus 179 l~~L~~L~l~~~~ 191 (467)
.++|+.|++++|.
T Consensus 324 ~~sL~~L~Ls~N~ 336 (754)
T PRK15370 324 PPGLKTLEAGENA 336 (754)
T ss_pred cccceeccccCCc
Confidence 1345555555553
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.36 E-value=7.1e-14 Score=128.17 Aligned_cols=125 Identities=26% Similarity=0.384 Sum_probs=74.1
Q ss_pred EEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCc-hhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccC
Q 012249 66 TLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVL-PSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYD 142 (467)
Q Consensus 66 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~ 142 (467)
.+.+..|. +..+|+..|+.+++||.|||++|.|+.+ |+.|..+..|..|-+-+++.++.+| .++.+..|+.|.+.-
T Consensus 71 eirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 71 EIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 34444444 4555555555555555555555555544 4455555555555555544555555 366666666666666
Q ss_pred CcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCC
Q 012249 143 TRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 143 ~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
|++.-++. .+..++++..|.+..|.+..++...+..+..++++++..|.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 66664443 36677777777777777777776556777777777776664
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=3.1e-13 Score=124.02 Aligned_cols=242 Identities=21% Similarity=0.150 Sum_probs=142.4
Q ss_pred ceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccC-
Q 012249 18 LFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSS- 96 (467)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~- 96 (467)
-++...+.++.++|..+-. ....+.+..|.|+.+|+..|+.+++||.|+++.|. +..+.+..|.+++.|-.|.+.+
T Consensus 49 ~~VdCr~~GL~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcC
Confidence 4567777788888875533 56777888888888888888888888888888886 6666666677777766666655
Q ss_pred CCCCCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccc-cccCCCCCcEEecc--------
Q 012249 97 TDIEVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLS-------- 164 (467)
Q Consensus 97 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~-------- 164 (467)
|+|..+|. .++.+..|+.|.+..| .+.-++ .+..+++|..|.+.++.+..++. .+..+..++.+++.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 67776663 3455666666655553 222222 34445555555554444443333 12222222222211
Q ss_pred -----------------------------------------------------CCCC-CCcCCccccCCCCCcEEEcccC
Q 012249 165 -----------------------------------------------------SLQL-KKFPAGILPRLRSLYKLKLSFG 190 (467)
Q Consensus 165 -----------------------------------------------------~~~~-~~~~~~~l~~l~~L~~L~l~~~ 190 (467)
.+.. ...|..-|+.+++|++|++++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 1111 1222223577788888888887
Q ss_pred CCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccch
Q 012249 191 NEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIK 270 (467)
Q Consensus 191 ~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 270 (467)
....... ..|+++ ..+++|.+..|.+..+. ...+.++.+++.|...+.-.....++.+.....|..+.+-.++
T Consensus 285 ~i~~i~~-~aFe~~-a~l~eL~L~~N~l~~v~-----~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 285 KITRIED-GAFEGA-AELQELYLTRNKLEFVS-----SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccchhhh-hhhcch-hhhhhhhcCcchHHHHH-----HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 6655554 577777 77777777777664442 2233444444444333333333446667777778888777665
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=3.8e-11 Score=124.88 Aligned_cols=179 Identities=19% Similarity=0.311 Sum_probs=141.2
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...++++..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|. +..+|..+. ..|++|++++|.
T Consensus 203 ~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~-L~~LP~~l~---s~L~~L~Ls~N~ 273 (754)
T PRK15370 203 TLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP---DTIQEMELSINR-ITELPERLP---SALQSLDLFHNK 273 (754)
T ss_pred EEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh---ccccEEECcCCc-cCcCChhHh---CCCCEEECcCCc
Confidence 45667888899988654 589999999999998887543 579999999998 668887653 579999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCcccc
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILP 177 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 177 (467)
+..+|..+. .+|++|++++| .+..+| .+. .+|+.|++++|.++.+|..+. ++|+.|++++|.+..+|..+
T Consensus 274 L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l-- 344 (754)
T PRK15370 274 ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL-- 344 (754)
T ss_pred cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhh--
Confidence 998887554 58999999997 566677 333 478999999999998886553 68999999999998888754
Q ss_pred CCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccch
Q 012249 178 RLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDF 221 (467)
Q Consensus 178 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 221 (467)
.++|+.|++++|.+... + ..+ . +.|+.|++++|.+...
T Consensus 345 -~~sL~~L~Ls~N~L~~L-P-~~l--p-~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 345 -PPELQVLDVSKNQITVL-P-ETL--P-PTITTLDVSRNALTNL 382 (754)
T ss_pred -cCcccEEECCCCCCCcC-C-hhh--c-CCcCEEECCCCcCCCC
Confidence 36899999999866432 2 122 3 7899999998876544
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=3.2e-11 Score=115.41 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=20.4
Q ss_pred cccccEEEEecCCCCc-cccc-cchHHhhhccceeeeCCc
Q 012249 310 SHDLKVLRFDSCKNLK-NLFS-LRLLPALQNLKVLAVISC 347 (467)
Q Consensus 310 ~~~L~~L~l~~c~~l~-~l~~-~~~~~~l~~L~~L~l~~c 347 (467)
+. |++|++.+|.... .... ...++.+++|+.++++++
T Consensus 250 ~~-L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 250 IS-LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CC-ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 44 8888888764321 1001 123345567788888774
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=2.6e-11 Score=116.04 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=21.9
Q ss_pred ccccccEEEEecCCCCccccccchHHhh----hccceeeeCCc
Q 012249 309 FSHDLKVLRFDSCKNLKNLFSLRLLPAL----QNLKVLAVISC 347 (467)
Q Consensus 309 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l----~~L~~L~l~~c 347 (467)
++. |++|++++|+ +++.........+ +.|+.|++.+|
T Consensus 220 ~~~-L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 220 LKS-LEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred cCC-CCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC
Confidence 456 8888888864 3432222222333 67888888876
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.6e-11 Score=117.89 Aligned_cols=192 Identities=24% Similarity=0.387 Sum_probs=140.7
Q ss_pred eEEEcCCCcccCCcCcc--CCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccC
Q 012249 19 FMVKAGLRLLEFPGEQE--WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSS 96 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~--~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (467)
....++.+++++|.... .+......+++.|++.++|..+. .|..|..+.+..|. +..+|..+ ..+..|.+|+++.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~-~f~~Le~liLy~n~-~r~ip~~i-~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEAC-AFVSLESLILYHNC-IRTIPEAI-CNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHH-HHHHHHHHHHHhcc-ceecchhh-hhhhHHHHhhhcc
Confidence 35666777888876443 34445677888888888877655 67777777777776 66777665 6788888888888
Q ss_pred CCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCcc
Q 012249 97 TDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 97 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 175 (467)
|+++.+|..+..++ |+.|.+++| +++.+| .++.+..|..||.+.|.+..+|..++++.+|+.|.++.|++..+|.+.
T Consensus 131 NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El 208 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL 208 (722)
T ss_pred chhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH
Confidence 88888887777776 778877774 667777 677777788888888888888888888888888888888877777776
Q ss_pred ccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 176 LPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 176 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
..+ .|..|++++|+..... -.|.+| ++|++|-+++|.+..
T Consensus 209 -~~L-pLi~lDfScNkis~iP--v~fr~m-~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 209 -CSL-PLIRLDFSCNKISYLP--VDFRKM-RHLQVLQLENNPLQS 248 (722)
T ss_pred -hCC-ceeeeecccCceeecc--hhhhhh-hhheeeeeccCCCCC
Confidence 433 4777888877554332 367777 888888887776644
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=1.1e-09 Score=93.11 Aligned_cols=121 Identities=23% Similarity=0.308 Sum_probs=44.3
Q ss_pred CCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhh-hcCcCCCEEE
Q 012249 38 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSV-SDLTNLRSLS 116 (467)
Q Consensus 38 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~ 116 (467)
.++++|++.++.++.+.. +...+.+|+.|++++|. +..+.. +..++.|++|++++|.+..+...+ ..+++|+.|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccc-hhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 367888888888886643 22256788888888887 555553 467888888888888888776555 3588888888
Q ss_pred cCCCCCCCcCC---CccccCCccEEEccCCcCccccc----cccCCCCCcEEec
Q 012249 117 LGWCRRLKRVP---SLARLLALQYLDLYDTRIEEVPE----GMEMLENLSHLYL 163 (467)
Q Consensus 117 l~~~~~~~~~p---~l~~l~~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~l 163 (467)
+++| .+..+. .+..+++|+.|++.+|.+..-+. .+..+|+|+.||-
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8875 444443 46667777777777776664432 2455666666654
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.92 E-value=3.1e-11 Score=111.96 Aligned_cols=122 Identities=18% Similarity=0.346 Sum_probs=75.2
Q ss_pred cccceeeeeeccccccccccccccccccccc-CccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhc
Q 012249 277 KDVQCLQMFEVDEVTSLNDVLPRELGLVNIG-KFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVA 355 (467)
Q Consensus 277 ~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 355 (467)
..++.|.+.+|...++.+ +...+ ..+. |+.+++..|...++-.-.....+++.|+.+.++.|+.+++. .
T Consensus 320 ~~L~~l~l~~c~~fsd~~--------ft~l~rn~~~-Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-g 389 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRG--------FTMLGRNCPH-LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-G 389 (483)
T ss_pred CceEEEeccccchhhhhh--------hhhhhcCChh-hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-h
Confidence 356666666666555443 11112 2345 88888888876665322223367888888888888887766 1
Q ss_pred ccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCcccc
Q 012249 356 VEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRL 419 (467)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 419 (467)
+.-.++. ......|+.+++.+||.+.+-..+.. ..++.||.+++.+|.....-
T Consensus 390 i~~l~~~----------~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 390 IRHLSSS----------SCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKE 442 (483)
T ss_pred hhhhhhc----------cccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhh
Confidence 1100000 11677788888888888776544432 45778888888888777653
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=2.5e-09 Score=91.02 Aligned_cols=127 Identities=26% Similarity=0.363 Sum_probs=42.3
Q ss_pred cCCCCcEEEccCCCCCCchhhhh-cCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccc-cCCCCCcEEe
Q 012249 85 HMHGLKVVNLSSTDIEVLPSSVS-DLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGM-EMLENLSHLY 162 (467)
Q Consensus 85 ~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~ 162 (467)
+...++.|++.++.+..+. .++ .+.+|+.|++++| .+..++++..+++|++|++++|.++.+...+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4445566666666666553 233 3566666666664 4555556666677777777777777665444 3567777777
Q ss_pred ccCCCCCCcCC-ccccCCCCCcEEEcccCCCcccccH--HHHHhhhccCcEEEcc
Q 012249 163 LSSLQLKKFPA-GILPRLRSLYKLKLSFGNEALRETV--EEAARLSDRLDYFEGY 214 (467)
Q Consensus 163 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~l~~~L~~L~l~ 214 (467)
+++|++.++.. ..+..+++|+.|++.+|........ ..+..+ ++|+.|+-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l-P~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL-PSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc-ChhheeCCE
Confidence 77777644433 1246677777777777755433322 246666 778877653
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.4e-10 Score=104.39 Aligned_cols=86 Identities=26% Similarity=0.235 Sum_probs=37.5
Q ss_pred cCCCCccEEEeecCCCcccCC-CccCCCCCCCEEEccCCCCCCCCc-hhHhhcCCCCcEEEccCCCCCCchhh--hhcCc
Q 012249 35 EWEENLERVSLMRNNIEEIPS-NMSPHCEILSTLLLQRNENLQRIP-ECFFVHMHGLKVVNLSSTDIEVLPSS--VSDLT 110 (467)
Q Consensus 35 ~~l~~l~~L~l~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~l~~~--~~~l~ 110 (467)
+.+++|+.+.+.+..+...+. .....|++++.|+++.|-+....+ ..+.+.+++|+.|+++.|.+....++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 344555555555555443221 222345555555555553222111 22334555555555555544421111 12344
Q ss_pred CCCEEEcCCC
Q 012249 111 NLRSLSLGWC 120 (467)
Q Consensus 111 ~L~~L~l~~~ 120 (467)
+|+.|.++.|
T Consensus 198 ~lK~L~l~~C 207 (505)
T KOG3207|consen 198 HLKQLVLNSC 207 (505)
T ss_pred hhheEEeccC
Confidence 5555555554
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.3e-10 Score=105.00 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=109.5
Q ss_pred CCCCCCEEEccCCCCCCCCch-hHhhcCCCCcEEEccCCCCC---CchhhhhcCcCCCEEEcCCCCCCCcCC--CccccC
Q 012249 60 HCEILSTLLLQRNENLQRIPE-CFFVHMHGLKVVNLSSTDIE---VLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLL 133 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~ 133 (467)
++++|+.+.+..+. +...+. +....|++++.||+++|=+. .+.+....+++|+.|+++.|....... .-..+.
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 68888989888887 555442 45578999999999998555 444556788999999999875443333 244678
Q ss_pred CccEEEccCCcCc--cccccccCCCCCcEEeccCCC-C--CCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccC
Q 012249 134 ALQYLDLYDTRIE--EVPEGMEMLENLSHLYLSSLQ-L--KKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRL 208 (467)
Q Consensus 134 ~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~-~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L 208 (467)
+|+.|.+++|+++ .+......+++|+.|++.+|. + ...+ ..-++.|++|++++|.+.........+.+ +.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l-~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYKVGTL-PGL 273 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccccccc-cch
Confidence 8888999998887 344445677888888888884 2 2222 24466788888888877666666677777 777
Q ss_pred cEEEcccCCc
Q 012249 209 DYFEGYFSTL 218 (467)
Q Consensus 209 ~~L~l~~~~~ 218 (467)
+.|.++.+..
T Consensus 274 ~~Lnls~tgi 283 (505)
T KOG3207|consen 274 NQLNLSSTGI 283 (505)
T ss_pred hhhhccccCc
Confidence 7777766654
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=6.5e-10 Score=98.96 Aligned_cols=127 Identities=24% Similarity=0.346 Sum_probs=57.5
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcC
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLG 118 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 118 (467)
.|+.+++++|.|.++..++. -.|.+|.|+++.|. +..+.. ...+++|..||+++|.+..+..+=.++-+.+.|+++
T Consensus 285 ~LtelDLS~N~I~~iDESvK-L~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVK-LAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhhhhhhhh-hccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34444555555444444332 34455555555544 222222 234445555555555444443333344444555555
Q ss_pred CCCCCCcCCCccccCCccEEEccCCcCcccc--ccccCCCCCcEEeccCCCCCC
Q 012249 119 WCRRLKRVPSLARLLALQYLDLYDTRIEEVP--EGMEMLENLSHLYLSSLQLKK 170 (467)
Q Consensus 119 ~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~ 170 (467)
+| .+..+.+++++.+|..||+++|+|..+. ..|++++.|+++.+.+|.+..
T Consensus 361 ~N-~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QN-KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hh-hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 42 3444444455555555555555444332 234445555544444444433
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=1.5e-10 Score=111.33 Aligned_cols=190 Identities=24% Similarity=0.353 Sum_probs=144.9
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
+...+.+++.++|..+..+..|..+.++.|.+..+|..+. ++..|..++++.|+ +..+|..+ ..+ -|++|-+++|+
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~-~L~~lt~l~ls~Nq-lS~lp~~l-C~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAIC-NLEALTFLDLSSNQ-LSHLPDGL-CDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhh-hhhHHHHhhhccch-hhcCChhh-hcC-cceeEEEecCc
Confidence 3455667788888887777788888888888888887766 78888888998887 77778766 344 48889999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCcccc
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILP 177 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 177 (467)
+..+|..++....|..|+.+.| .+..+| .++.+.+|+.|++..|++..+|..++. =.|..||++.|++..+|..+ .
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~f-r 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDF-R 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchhh-h
Confidence 8888888888888888988886 456666 688888899999888888888888874 46778898888888888886 8
Q ss_pred CCCCCcEEEcccCCCccc-ccHHHHHhhhccCcEEEcccC
Q 012249 178 RLRSLYKLKLSFGNEALR-ETVEEAARLSDRLDYFEGYFS 216 (467)
Q Consensus 178 ~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~~L~~L~l~~~ 216 (467)
+|+.|++|-+.+|..... ..+..-+.. .-.+.|++.-+
T Consensus 232 ~m~~Lq~l~LenNPLqSPPAqIC~kGkV-HIFKyL~~qA~ 270 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPAQICEKGKV-HIFKYLSTQAC 270 (722)
T ss_pred hhhhheeeeeccCCCCCChHHHHhccce-eeeeeecchhc
Confidence 899999999988855433 222233333 44455565544
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.8e-10 Score=99.71 Aligned_cols=188 Identities=20% Similarity=0.204 Sum_probs=120.0
Q ss_pred CCccEEEccCCcCc--cccccccCCCCCcEEeccCCCCCC-cCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCc
Q 012249 133 LALQYLDLYDTRIE--EVPEGMEMLENLSHLYLSSLQLKK-FPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLD 209 (467)
Q Consensus 133 ~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~ 209 (467)
..|+++|++...++ .+...+..|.+|+.|.+.++++++ +...+ ..-.+|+.|+++.+...+......+-.-|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 34888999888776 455567888889999998888743 44444 777889999998887766665554444448888
Q ss_pred EEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccchhhhhhhcccceeeeeeccc
Q 012249 210 YFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKETIVLLKDVQCLQMFEVDE 289 (467)
Q Consensus 210 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~L~~~~~~~ 289 (467)
.|+++++........+... .-...|..|+++++.-... .+.+.+|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~---------------------------hise~l~~LNlsG~rrnl~-~sh~~tL------- 308 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVA---------------------------HISETLTQLNLSGYRRNLQ-KSHLSTL------- 308 (419)
T ss_pred hcCchHhhccchhhhHHHh---------------------------hhchhhhhhhhhhhHhhhh-hhHHHHH-------
Confidence 8888888653321110000 0001344455554431100 0122222
Q ss_pred ccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhcccc
Q 012249 290 VTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNT 369 (467)
Q Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~ 369 (467)
....|+ |.+||+++|..+++ .....+-.++.|+.|.++.|+.+.--....
T Consensus 309 ----------------~~rcp~-l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~------------ 358 (419)
T KOG2120|consen 309 ----------------VRRCPN-LVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLE------------ 358 (419)
T ss_pred ----------------HHhCCc-eeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeee------------
Confidence 123466 99999999998887 344566788999999999998775432222
Q ss_pred cccccccccccccccccccc
Q 012249 370 IINTVTLPRLKKLRFYDLPE 389 (467)
Q Consensus 370 ~~~~~~~~~L~~L~l~~~~~ 389 (467)
....|+|.+|++.+|-.
T Consensus 359 ---l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 359 ---LNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ---eccCcceEEEEeccccC
Confidence 22678888888888754
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=9.9e-09 Score=101.26 Aligned_cols=177 Identities=31% Similarity=0.373 Sum_probs=125.7
Q ss_pred CccCCCCccEEEeecCCCcccCCCccCCCC-CCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcC
Q 012249 33 EQEWEENLERVSLMRNNIEEIPSNMSPHCE-ILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTN 111 (467)
Q Consensus 33 ~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 111 (467)
.+...+.++.+.+.++.+.+++.... ..+ +|+.|++..|. +..+|..+ +.++.|+.|++++|++..+|...+..+.
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~-i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNK-IESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred hhhcccceeEEecCCcccccCccccc-cchhhcccccccccc-hhhhhhhh-hccccccccccCCchhhhhhhhhhhhhh
Confidence 33444667888888888887776543 443 78888888887 56664333 6788888888888888888776668888
Q ss_pred CCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccC
Q 012249 112 LRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFG 190 (467)
Q Consensus 112 L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 190 (467)
|+.|++++| .+..+| .+.....|+++.++++.....+..+.++.++..+.+..+++..++..+ +.+.+++.|+++.|
T Consensus 188 L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-~~l~~l~~L~~s~n 265 (394)
T COG4886 188 LNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI-GNLSNLETLDLSNN 265 (394)
T ss_pred hhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchh-ccccccceeccccc
Confidence 888888885 567777 345666688888888766666667777777777777777776655554 77777888888877
Q ss_pred CCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 191 NEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 191 ~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
...... .++.+ .+++.|+++.+..
T Consensus 266 ~i~~i~---~~~~~-~~l~~L~~s~n~~ 289 (394)
T COG4886 266 QISSIS---SLGSL-TNLRELDLSGNSL 289 (394)
T ss_pred cccccc---ccccc-CccCEEeccCccc
Confidence 544332 26777 7788888776654
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1.6e-08 Score=99.83 Aligned_cols=172 Identities=27% Similarity=0.391 Sum_probs=108.2
Q ss_pred EEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCC-CCcEEEccCCCCCCchhhhhcCcCCCEEEcCCC
Q 012249 42 RVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMH-GLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWC 120 (467)
Q Consensus 42 ~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 120 (467)
.+....+.+......+. ..+.+..+++.++. +..++... ...+ +|+.|++++|.+..+|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~~~~-~~~~l~~L~l~~n~-i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELL-ELTNLTSLDLDNNN-ITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhh-cccceeEEecCCcc-cccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 35555555422222222 45667777777776 56666543 3443 777777777777777666777777777777775
Q ss_pred CCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHH
Q 012249 121 RRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVE 199 (467)
Q Consensus 121 ~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 199 (467)
.+..+| ..+....|+.|+++++.+..+|..+..+..|+.+.+++|.+...+..+ +++.++..+.+..+..... ..
T Consensus 174 -~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~-~~~~~l~~l~l~~n~~~~~--~~ 249 (394)
T COG4886 174 -DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSL-SNLKNLSGLELSNNKLEDL--PE 249 (394)
T ss_pred -hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhh-hhcccccccccCCceeeec--cc
Confidence 466666 344777777777777777777766666666777777777544444443 6666677766665533221 24
Q ss_pred HHHhhhccCcEEEcccCCccch
Q 012249 200 EAARLSDRLDYFEGYFSTLKDF 221 (467)
Q Consensus 200 ~l~~l~~~L~~L~l~~~~~~~~ 221 (467)
.++.+ ..++.|+++.+.....
T Consensus 250 ~~~~l-~~l~~L~~s~n~i~~i 270 (394)
T COG4886 250 SIGNL-SNLETLDLSNNQISSI 270 (394)
T ss_pred hhccc-cccceecccccccccc
Confidence 56666 6677777777665443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.7e-09 Score=96.30 Aligned_cols=129 Identities=28% Similarity=0.273 Sum_probs=81.4
Q ss_pred CCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCC
Q 012249 87 HGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSL 166 (467)
Q Consensus 87 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 166 (467)
+.|..+|+++|.++.+..++.-.+.+|.|+++.| .+..+.++..+++|..||+++|.++.+-..-.++-+++.|.+.+|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 3566677777777766666666777777777764 444444566666777777777666655444445566666666666
Q ss_pred CCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 167 QLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 167 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
.+.++.. ++++=+|..|++.+|....-..+..++++ +.|+.+.+.+|.+.
T Consensus 363 ~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 363 KIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNPLA 412 (490)
T ss_pred hHhhhhh--hHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCCcc
Confidence 6655443 35666666667766655555555566666 66777666666553
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.62 E-value=1.9e-09 Score=100.21 Aligned_cols=137 Identities=19% Similarity=0.200 Sum_probs=87.5
Q ss_pred ccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhccc
Q 012249 278 DVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVE 357 (467)
Q Consensus 278 ~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 357 (467)
.++.|...+|..+++... |.-...-++ |+.|.+..|...++...-....+.+.|+.+.+..|..+.+..-..
T Consensus 295 ~lq~l~~s~~t~~~d~~l-------~aLg~~~~~-L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVL-------WALGQHCHN-LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred HhhhhcccCCCCCchHHH-------HHHhcCCCc-eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 455666666655443220 111122344 999999999887776433344677888888888887666541111
Q ss_pred CchhhhhhccccccccccccccccccccccccccccccCC---CccccCCcceEEEeCCCCccccCCccCcccCCCCCCC
Q 012249 358 DEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYN---GVLVCNSLQEIEVRRCPKLKRLSLSLPLLDHGQPSPP 434 (467)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~~~~~~~ 434 (467)
+ ....|.|+.|.++.|..+++-.... +......|+.+++++||.+++-- +.++ ..+
T Consensus 367 -------l-------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~--Le~l-----~~c 425 (483)
T KOG4341|consen 367 -------L-------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT--LEHL-----SIC 425 (483)
T ss_pred -------h-------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH--HHHH-----hhC
Confidence 1 2279999999999999888762211 22457789999999999887631 2222 346
Q ss_pred Ccceeeeeh
Q 012249 435 AALKVIKIE 443 (467)
Q Consensus 435 ~~L~~l~i~ 443 (467)
++|+.|++.
T Consensus 426 ~~Leri~l~ 434 (483)
T KOG4341|consen 426 RNLERIELI 434 (483)
T ss_pred cccceeeee
Confidence 688887655
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.48 E-value=1.1e-07 Score=66.37 Aligned_cols=59 Identities=34% Similarity=0.499 Sum_probs=39.3
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
+|++|++++|.++.++...+.++++|+.|++++|. +..+++..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 56667777776666666666666777777777665 555665566666667766666664
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=4.2e-07 Score=63.36 Aligned_cols=58 Identities=34% Similarity=0.486 Sum_probs=39.7
Q ss_pred CccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCC
Q 012249 134 ALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 134 ~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
+|++|++++|+++.+|. .+.++++|++|++++|.+..++...|.++++|+.|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56667777776666664 35667777777777777777766666777777777777663
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=1.9e-06 Score=89.48 Aligned_cols=103 Identities=20% Similarity=0.191 Sum_probs=51.2
Q ss_pred CCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCc-cccccccCCCCCcEEeccCCCCC-CcCCccccCCCCCcEEEcc
Q 012249 112 LRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIE-EVPEGMEMLENLSHLYLSSLQLK-KFPAGILPRLRSLYKLKLS 188 (467)
Q Consensus 112 L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~ 188 (467)
++.|++++|...+.+| .++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|..+ +++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECc
Confidence 4455555544444444 4555555555555555554 45555555555555555555553 333333 555555555555
Q ss_pred cCCCcccccHHHHHhhhccCcEEEcccC
Q 012249 189 FGNEALRETVEEAARLSDRLDYFEGYFS 216 (467)
Q Consensus 189 ~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 216 (467)
+|.+.+..+ ..+.....++..+++.+|
T Consensus 499 ~N~l~g~iP-~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVP-AALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCC-hHHhhccccCceEEecCC
Confidence 554443333 223322133444454444
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=2.4e-06 Score=88.77 Aligned_cols=104 Identities=24% Similarity=0.363 Sum_probs=84.4
Q ss_pred CCcEEEccCCCCC-CchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCc-cccccccCCCCCcEEecc
Q 012249 88 GLKVVNLSSTDIE-VLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIE-EVPEGMEMLENLSHLYLS 164 (467)
Q Consensus 88 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~ 164 (467)
.++.|+|+++.+. .+|..+..+++|+.|++++|...+.+| .++.+++|+.|++++|.++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778899999887 778888999999999999987666788 6889999999999999887 678889999999999999
Q ss_pred CCCCC-CcCCccccCCCCCcEEEcccCC
Q 012249 165 SLQLK-KFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 165 ~~~~~-~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
+|.+. .+|..+.....++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99874 6776652223566778887774
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.9e-08 Score=86.23 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=103.7
Q ss_pred CCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCC-CchhhhhcCcCCCEEEcCCCCCCCcCC---CccccCCccE
Q 012249 62 EILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE-VLPSSVSDLTNLRSLSLGWCRRLKRVP---SLARLLALQY 137 (467)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~p---~l~~l~~L~~ 137 (467)
..|+.++++...+....-..+.+.|.+|+.|.+.++.+. .+...+.+-.+|+.|+++.|..++... -+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357777777765322222345677888888888888776 555667777888888888887777665 3778888888
Q ss_pred EEccCCcCc-c-ccccccC-CCCCcEEeccCCC--C--CCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcE
Q 012249 138 LDLYDTRIE-E-VPEGMEM-LENLSHLYLSSLQ--L--KKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDY 210 (467)
Q Consensus 138 L~l~~~~~~-~-lp~~~~~-l~~L~~L~l~~~~--~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~ 210 (467)
|++++|.+. . +...+.. -++|..|+++|+. + ..+..- -.++++|.+|+++.+-.....-+..+-++ +.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHhc-chhee
Confidence 888888444 1 1111222 2577778888774 2 223222 26788888888888766666556677788 88888
Q ss_pred EEcccCC
Q 012249 211 FEGYFST 217 (467)
Q Consensus 211 L~l~~~~ 217 (467)
|+++.|.
T Consensus 343 lSlsRCY 349 (419)
T KOG2120|consen 343 LSLSRCY 349 (419)
T ss_pred eehhhhc
Confidence 8887664
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=1.8e-07 Score=85.39 Aligned_cols=181 Identities=17% Similarity=0.118 Sum_probs=98.2
Q ss_pred CCCCccEEEeecCCCcc--cC--CCccCCCCCCCEEEccCCCCCCCCchhH-------------hhcCCCCcEEEccCCC
Q 012249 36 WEENLERVSLMRNNIEE--IP--SNMSPHCEILSTLLLQRNENLQRIPECF-------------FVHMHGLKVVNLSSTD 98 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~~--l~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~ 98 (467)
.+++|+.++++.|-+.. ++ ....+.+..|+.|.+.+|.+ +...... ...-+.||++...+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 44567777777665541 00 11223466666666766653 2211111 1234567777777765
Q ss_pred CC-----CchhhhhcCcCCCEEEcCCCCCCCcCC-----CccccCCccEEEccCCcCc-----cccccccCCCCCcEEec
Q 012249 99 IE-----VLPSSVSDLTNLRSLSLGWCRRLKRVP-----SLARLLALQYLDLYDTRIE-----EVPEGMEMLENLSHLYL 163 (467)
Q Consensus 99 ~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~p-----~l~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l 163 (467)
+. .+...+..++.|+.+.+..|..-..-. ++..+++|+.||+.+|.++ .+...+..+++|+.+++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 55 233445556677777776653222111 3566777777777777655 22334566677777777
Q ss_pred cCCCCCCc-----CCccccCCCCCcEEEcccCCCccccc---HHHHHhhhccCcEEEcccCCc
Q 012249 164 SSLQLKKF-----PAGILPRLRSLYKLKLSFGNEALRET---VEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 164 ~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~~ 218 (467)
++|.++.- ...+-...++|++|.+.+|....... ...++.. +.|+.|.++.|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek-~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK-PDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc-hhhHHhcCCcccc
Confidence 77765321 11222345677777777775433221 1133444 6777777777765
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.15 E-value=1.1e-06 Score=91.02 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=50.3
Q ss_pred CccEEEeecCCCc--ccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEE
Q 012249 39 NLERVSLMRNNIE--EIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLS 116 (467)
Q Consensus 39 ~l~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 116 (467)
+|++|++++...- ..+..+...+|+|+.|.+.+-.+...--..+..++++|+.||+++++++.+ .+++++++|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 4555555553221 222233334566666666554432222222344556666666666665555 4555666666665
Q ss_pred cCCCCCCCcCC---CccccCCccEEEccCC
Q 012249 117 LGWCRRLKRVP---SLARLLALQYLDLYDT 143 (467)
Q Consensus 117 l~~~~~~~~~p---~l~~l~~L~~L~l~~~ 143 (467)
+.+- ...... .+.++++|+.||++..
T Consensus 202 mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 202 MRNL-EFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccCC-CCCchhhHHHHhcccCCCeeecccc
Confidence 5542 222222 3555556666666554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=7.8e-08 Score=95.58 Aligned_cols=126 Identities=27% Similarity=0.283 Sum_probs=77.6
Q ss_pred CCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCC
Q 012249 88 GLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSL 166 (467)
Q Consensus 88 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 166 (467)
.|.+.+.++|.+..+..++.-+++|+.|+++.|. +.....+..+++|++||++.|.++.+|.- ...+. |+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 3555555555555556666667777777777753 33333666677777777777777666643 23333 777777777
Q ss_pred CCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 167 QLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 167 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
.++.+-. +.++++|+.|+++.|-.........+..+ ..|+.|.+.+|.+
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 6655443 25677777777777655555555556666 6666666666654
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=4.1e-06 Score=86.89 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=47.6
Q ss_pred CCCEEEccCCCC-CCCCchhHhhcCCCCcEEEccCCCCC--CchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEE
Q 012249 63 ILSTLLLQRNEN-LQRIPECFFVHMHGLKVVNLSSTDIE--VLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLD 139 (467)
Q Consensus 63 ~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~ 139 (467)
+|+.|+++|... ....|..+..-+|.|+.|.+.+-.+. .+..-..++++|+.||+++ ++++.+.++.++++|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHHh
Confidence 455555555432 22233333334555555555554332 2222234455555555555 3444444555555555555
Q ss_pred ccCCcCcccc--ccccCCCCCcEEeccCCC
Q 012249 140 LYDTRIEEVP--EGMEMLENLSHLYLSSLQ 167 (467)
Q Consensus 140 l~~~~~~~lp--~~~~~l~~L~~L~l~~~~ 167 (467)
+.+-.+..-. ..+.+|++|++||++...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 5443333211 234455555555555443
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.01 E-value=2.8e-06 Score=77.80 Aligned_cols=87 Identities=20% Similarity=0.105 Sum_probs=50.5
Q ss_pred CCCCCCEEEccCCCCCCC---CchhHhhcCCCCcEEEccCCCCC----Cchhh-------hhcCcCCCEEEcCCCCCCCc
Q 012249 60 HCEILSTLLLQRNENLQR---IPECFFVHMHGLKVVNLSSTDIE----VLPSS-------VSDLTNLRSLSLGWCRRLKR 125 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~----~l~~~-------~~~l~~L~~L~l~~~~~~~~ 125 (467)
.+..+..+++++|.+... .-...+.+.+.|+..++++--.. .+|.. +..+++|++++++.|-.-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456777888888864221 11223456677887777764211 34433 33466788888877643333
Q ss_pred CC-C----ccccCCccEEEccCCcCc
Q 012249 126 VP-S----LARLLALQYLDLYDTRIE 146 (467)
Q Consensus 126 ~p-~----l~~l~~L~~L~l~~~~~~ 146 (467)
.+ . +.++..|++|.+.+|++.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC
Confidence 22 1 555666777777777655
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.9e-05 Score=50.50 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=29.0
Q ss_pred CCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCC
Q 012249 133 LALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPA 173 (467)
Q Consensus 133 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 173 (467)
++|++|++++|.++.+|..+++|++|+.|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35777777777777777667888888888888887766543
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=4.5e-06 Score=82.69 Aligned_cols=175 Identities=26% Similarity=0.329 Sum_probs=116.7
Q ss_pred cCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcC
Q 012249 32 GEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTN 111 (467)
Q Consensus 32 ~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 111 (467)
.....+++++.+++..|.+..+...+ ..+++|+.|++++|. +..+.. +..++.|+.|++.+|.+..+.. +..++.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~ 163 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKS 163 (414)
T ss_pred cccccccceeeeeccccchhhcccch-hhhhcchheeccccc-cccccc--hhhccchhhheeccCcchhccC-Cccchh
Confidence 34566789999999999998776532 368999999999998 555543 3677889999999999887753 556899
Q ss_pred CCEEEcCCCCCCCcCCC--ccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCC--CCcEEEc
Q 012249 112 LRSLSLGWCRRLKRVPS--LARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLR--SLYKLKL 187 (467)
Q Consensus 112 L~~L~l~~~~~~~~~p~--l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l 187 (467)
|+.+++++| .+..+.. +..+.+++.+.+.++.+..+. .+..+..+..+++..+.+..+.. +..+. +|+.+++
T Consensus 164 L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 164 LKLLDLSYN-RIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYL 239 (414)
T ss_pred hhcccCCcc-hhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhc
Confidence 999999996 4555554 588888999999888776542 33344444444666665543332 12222 2677777
Q ss_pred ccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 188 SFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 188 ~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
..+...... ..+..+ .++..+++..+..
T Consensus 240 ~~n~i~~~~--~~~~~~-~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 240 SGNRISRSP--EGLENL-KNLPVLDLSSNRI 267 (414)
T ss_pred ccCcccccc--cccccc-ccccccchhhccc
Confidence 766443321 234445 5566666655443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=5.6e-05 Score=48.32 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=18.7
Q ss_pred CCcEEEccCCCCCCchhhhhcCcCCCEEEcCCC
Q 012249 88 GLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWC 120 (467)
Q Consensus 88 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 120 (467)
+|++|++++|++..+|..++++++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 456666666666666555566666666666654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=9.1e-07 Score=88.22 Aligned_cols=156 Identities=24% Similarity=0.239 Sum_probs=110.4
Q ss_pred CcCccCCCCccEEEeecCCCcccCCC----------ccC---------------------CCCCCCEEEccCCCCCCCCc
Q 012249 31 PGEQEWEENLERVSLMRNNIEEIPSN----------MSP---------------------HCEILSTLLLQRNENLQRIP 79 (467)
Q Consensus 31 ~~~~~~l~~l~~L~l~~~~~~~l~~~----------~~~---------------------~l~~L~~L~l~~~~~~~~~~ 79 (467)
|-.+..++.||+|.+.++++.....- |.. .--.|.+.+++.|. ...+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HHhHH
Confidence 44566778999999998876531110 000 01123334444443 22222
Q ss_pred hhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccccccCCCC
Q 012249 80 ECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEGMEMLEN 157 (467)
Q Consensus 80 ~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 157 (467)
.+ ..-++.|+.|+|++|++.... .+..+++|++||+++| .+..+| +...+. |..|++++|-++++ .++.++.+
T Consensus 181 ~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 181 ES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKS 255 (1096)
T ss_pred HH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhh-hhHHhhhh
Confidence 23 356789999999999998776 6889999999999995 688888 455555 99999999988887 47899999
Q ss_pred CcEEeccCCCCCCcCC-ccccCCCCCcEEEcccCCC
Q 012249 158 LSHLYLSSLQLKKFPA-GILPRLRSLYKLKLSFGNE 192 (467)
Q Consensus 158 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 192 (467)
|+.||+++|-+.+... ..++.+..|.+|.+.+|..
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999999998744333 2257788999999999854
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.0002 Score=68.92 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=49.2
Q ss_pred CCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC-CCCCchhhhhcCcCCCE
Q 012249 36 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST-DIEVLPSSVSDLTNLRS 114 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~ 114 (467)
.++++++|+++++.+..+|. -.++|+.|.+.+|.....+|..+ .++|++|++++| .+..+|.. |+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cce
Confidence 35688888888888887772 23468888888876666666533 257888888887 66666643 555
Q ss_pred EEcCC
Q 012249 115 LSLGW 119 (467)
Q Consensus 115 L~l~~ 119 (467)
|++..
T Consensus 117 L~L~~ 121 (426)
T PRK15386 117 LEIKG 121 (426)
T ss_pred EEeCC
Confidence 65554
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=1.4e-05 Score=79.18 Aligned_cols=134 Identities=26% Similarity=0.345 Sum_probs=92.0
Q ss_pred CCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEE
Q 012249 60 HCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLD 139 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~ 139 (467)
.+..++.+.+..+. +...-.. +..+++|..|++.+|.+..+...+..+++|++|++++| .++.+.++..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~-i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL-IAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhh-hhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhhe
Confidence 34556666666665 3332222 36778888888888888877655677888888888885 677777777777788888
Q ss_pred ccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCccccc
Q 012249 140 LYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRET 197 (467)
Q Consensus 140 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 197 (467)
+.+|.+..+. .+..+..|+.+++++|.+..+.......+.+++.+.+.+|.......
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc
Confidence 8888777663 55567888888888888766665102567777777777775544433
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=4.2e-05 Score=68.81 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=41.4
Q ss_pred CCCcEEeccCCCCCCcCCc-cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 156 ENLSHLYLSSLQLKKFPAG-ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
+++..+.+..|.+++...+ -+...+.+..|+++.+....-..+.++.++ +.|..|++..+.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f-~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF-PQLVDLRVSENPL 261 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC-chhheeeccCCcc
Confidence 4555555666665433221 124566677788887777677777888888 9999888877665
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.0005 Score=58.64 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=53.4
Q ss_pred CCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhc-CcCCCEEEcCCCCCCCcCC---CccccCCccE
Q 012249 62 EILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSD-LTNLRSLSLGWCRRLKRVP---SLARLLALQY 137 (467)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~p---~l~~l~~L~~ 137 (467)
...-.++++.|. +..++. |..++.|.+|.+.+|.+..+...+.. +++|..|.+.+| .+..+. .+..++.|++
T Consensus 42 d~~d~iDLtdNd-l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccc-hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 344455666655 333332 34556666666666666655444433 455666666664 233332 4555666666
Q ss_pred EEccCCcCccccc----cccCCCCCcEEeccC
Q 012249 138 LDLYDTRIEEVPE----GMEMLENLSHLYLSS 165 (467)
Q Consensus 138 L~l~~~~~~~lp~----~~~~l~~L~~L~l~~ 165 (467)
|.+-+|.++.-.. .+..+++|+.||+..
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666665554332 255666666666554
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=6.5e-05 Score=67.64 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=30.0
Q ss_pred ccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 152 MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 152 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
+.+|+.|+.|+++.|.+.......-....+|++|-+.+........-..+..+ +.++.|.++.|++
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l-P~vtelHmS~N~~ 158 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL-PKVTELHMSDNSL 158 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc-hhhhhhhhccchh
Confidence 34455555555554443211110001334555555555544433333345555 5566666665544
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=2.6e-05 Score=62.03 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=41.9
Q ss_pred cCCCCcEEEccCCCCCCchhhhh-cCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEe
Q 012249 85 HMHGLKVVNLSSTDIEVLPSSVS-DLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLY 162 (467)
Q Consensus 85 ~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 162 (467)
...+|...++++|.+..+|..+. .++.+..++++.| .+.++| .+..++.|+.|+++.|.+...|+.+..+.++..|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 33344444555555554444432 2334444444442 344444 34444444444444455555555555555555555
Q ss_pred ccCCCCCCcCC
Q 012249 163 LSSLQLKKFPA 173 (467)
Q Consensus 163 l~~~~~~~~~~ 173 (467)
..++....+|.
T Consensus 130 s~~na~~eid~ 140 (177)
T KOG4579|consen 130 SPENARAEIDV 140 (177)
T ss_pred CCCCccccCcH
Confidence 55555444443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00047 Score=58.77 Aligned_cols=103 Identities=23% Similarity=0.254 Sum_probs=57.6
Q ss_pred CCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCCCcc-ccCCccEEEccCCcCccccc--cccCCCCCcEEec
Q 012249 87 HGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLA-RLLALQYLDLYDTRIEEVPE--GMEMLENLSHLYL 163 (467)
Q Consensus 87 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~-~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l 163 (467)
.....+|+++|.+..++ .+..+++|.+|.+.+|......|.+. .+++|..|.+.+|++..+-+ .+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34556666666665543 24556666666666654333334444 33456666666666664432 3556666666666
Q ss_pred cCCCCCCcC---CccccCCCCCcEEEcccC
Q 012249 164 SSLQLKKFP---AGILPRLRSLYKLKLSFG 190 (467)
Q Consensus 164 ~~~~~~~~~---~~~l~~l~~L~~L~l~~~ 190 (467)
-+|.+..-. ..++..+++|++|++...
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 666553322 233456666666666643
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.25 E-value=9.3e-05 Score=75.02 Aligned_cols=111 Identities=21% Similarity=0.142 Sum_probs=66.7
Q ss_pred cCcCCCEEEcCCCCCCCcCC---CccccCCccEEEccCC--cCcccc----ccccCCCCCcEEeccCCC-CCCcCC-ccc
Q 012249 108 DLTNLRSLSLGWCRRLKRVP---SLARLLALQYLDLYDT--RIEEVP----EGMEMLENLSHLYLSSLQ-LKKFPA-GIL 176 (467)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~p---~l~~l~~L~~L~l~~~--~~~~lp----~~~~~l~~L~~L~l~~~~-~~~~~~-~~l 176 (467)
.+++|+.+.+.+|..+.... ....+++|+.|+++++ .....+ .....+++|+.++++++. +++..- .+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36777777777776666532 4566777777777763 222111 123455777777777776 433322 222
Q ss_pred cCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 177 PRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 177 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
..+++|+.|.+..+...+...+..++.-|+.|+.|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 347778888766665445555556666557788888876654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.21 E-value=0.0012 Score=63.70 Aligned_cols=73 Identities=15% Similarity=0.390 Sum_probs=48.3
Q ss_pred CCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC-CCCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEE
Q 012249 60 HCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST-DIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYL 138 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L 138 (467)
.+.+++.|++++|. +..+|. -..+|+.|.+++| .+..+|..+ ..+|++|++++|..+..+| ..|+.|
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceE
Confidence 46788888888885 666662 2235888888875 445666544 3578888888886666666 235666
Q ss_pred EccCCc
Q 012249 139 DLYDTR 144 (467)
Q Consensus 139 ~l~~~~ 144 (467)
++.++.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665543
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.19 E-value=0.0013 Score=53.48 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=20.1
Q ss_pred cCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEcc
Q 012249 35 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLS 95 (467)
Q Consensus 35 ~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 95 (467)
..+++++.+.+.. .+..++...|.++.+++.+.+..+ +..++...|..++.++.+.+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 3344444444432 334444444444444444444432 333344344444444444443
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.06 E-value=0.00035 Score=70.83 Aligned_cols=134 Identities=24% Similarity=0.201 Sum_probs=86.8
Q ss_pred hHhhcCCCCcEEEccCC-CCCC--chhhhhcCcCCCEEEcCCC-CCCCcCC-----CccccCCccEEEccCCc-Ccccc-
Q 012249 81 CFFVHMHGLKVVNLSST-DIEV--LPSSVSDLTNLRSLSLGWC-RRLKRVP-----SLARLLALQYLDLYDTR-IEEVP- 149 (467)
Q Consensus 81 ~~~~~l~~L~~L~l~~~-~~~~--l~~~~~~l~~L~~L~l~~~-~~~~~~p-----~l~~l~~L~~L~l~~~~-~~~lp- 149 (467)
.+...++.|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ ....+++|+.|+++++. ++..-
T Consensus 182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 33455788888888887 3443 4455678899999999873 3333322 24456888999999885 65321
Q ss_pred ccc-cCCCCCcEEeccCCC-CCCcCC-ccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcc
Q 012249 150 EGM-EMLENLSHLYLSSLQ-LKKFPA-GILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGY 214 (467)
Q Consensus 150 ~~~-~~l~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~ 214 (467)
..+ ..+++|++|.+..|. +++..- .+..++++|++|+++++.......+..+...|++++.+.+.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 222 348899999977776 432221 22467888999999988776555445555446777776553
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.86 E-value=0.00027 Score=56.39 Aligned_cols=88 Identities=25% Similarity=0.413 Sum_probs=53.7
Q ss_pred CCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEE
Q 012249 61 CEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLD 139 (467)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~ 139 (467)
-..|...++++|. .+.+|..+...++.+..|++.+|.+..+|..+..++.|+.|+++.| .+...| .+..+.+|-.|+
T Consensus 52 ~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 3445556666665 5556655545566666677777776666666666777777777664 344444 455566666666
Q ss_pred ccCCcCccccc
Q 012249 140 LYDTRIEEVPE 150 (467)
Q Consensus 140 l~~~~~~~lp~ 150 (467)
..++....+|-
T Consensus 130 s~~na~~eid~ 140 (177)
T KOG4579|consen 130 SPENARAEIDV 140 (177)
T ss_pred CCCCccccCcH
Confidence 66665444443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=6.1e-05 Score=67.15 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=41.1
Q ss_pred CccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEc
Q 012249 134 ALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEG 213 (467)
Q Consensus 134 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l 213 (467)
+.+.|+++||+++.+ ..+.+|+.|++|.++.|.++.+.. +.+|++|++|++..|.+.....+.-+.++ ++|+.|-+
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhhHhh
Confidence 334455555555544 234455666666666666555554 34566666666665544444334444445 55555544
Q ss_pred ccC
Q 012249 214 YFS 216 (467)
Q Consensus 214 ~~~ 216 (467)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 433
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0038 Score=50.65 Aligned_cols=123 Identities=20% Similarity=0.336 Sum_probs=69.6
Q ss_pred cCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCCCEEEcCCCCCCCcCC--Cc
Q 012249 53 IPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRSLSLGWCRRLKRVP--SL 129 (467)
Q Consensus 53 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p--~l 129 (467)
++...|.++.+|+.+.+... +..++...|..+..|+.+.+..+ +..++ ..+..+..++.+.+.. .+..++ .+
T Consensus 3 i~~~~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 45667778899999998753 66788888899999999999885 66665 4556777899999975 445455 57
Q ss_pred cccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCc
Q 012249 130 ARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLY 183 (467)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 183 (467)
..+.+|+.+++..+ +..++.. +.++ +|+.+.+.. .+..++...|.++++|+
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 77999999999764 6666554 6676 899888775 56677777777777663
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.00011 Score=65.59 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=70.4
Q ss_pred CCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch--hhhhcCcCCCE
Q 012249 37 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP--SSVSDLTNLRS 114 (467)
Q Consensus 37 l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~ 114 (467)
+.+++.|+..++.++++. +...++.|++|.++-|. +..+.+ +.+|+.|+.|+|..|.|..+. ..+.++++||.
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 346777888888887653 34478888888888887 555544 578888888888888888663 45678888888
Q ss_pred EEcCCCCCCCcCC------CccccCCccEEE
Q 012249 115 LSLGWCRRLKRVP------SLARLLALQYLD 139 (467)
Q Consensus 115 L~l~~~~~~~~~p------~l~~l~~L~~L~ 139 (467)
|.+..|+..+..+ .+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877666655 145556666554
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.29 E-value=0.0059 Score=54.68 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=52.6
Q ss_pred CCCCCCEEEccCCCCCCCCch---hHhhcCCCCcEEEccCCCCC----Cc-------hhhhhcCcCCCEEEcCCCCCCCc
Q 012249 60 HCEILSTLLLQRNENLQRIPE---CFFVHMHGLKVVNLSSTDIE----VL-------PSSVSDLTNLRSLSLGWCRRLKR 125 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~----~l-------~~~~~~l~~L~~L~l~~~~~~~~ 125 (467)
.+..+..+++++|.+...-.. ..+.+-.+|++.+++.-... .+ .+.+-+|++|+..+++.|..-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356777888888874332221 12245567777777764221 22 33445678888888888765555
Q ss_pred CC-C----ccccCCccEEEccCCcCc
Q 012249 126 VP-S----LARLLALQYLDLYDTRIE 146 (467)
Q Consensus 126 ~p-~----l~~l~~L~~L~l~~~~~~ 146 (467)
.| . +.+-..|.+|.+.+|++.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 44 1 555666777777777655
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0015 Score=58.06 Aligned_cols=12 Identities=33% Similarity=0.371 Sum_probs=5.4
Q ss_pred CcCCCEEEcCCC
Q 012249 109 LTNLRSLSLGWC 120 (467)
Q Consensus 109 l~~L~~L~l~~~ 120 (467)
+++|++|.++.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 344444444443
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.89 E-value=0.023 Score=51.06 Aligned_cols=170 Identities=16% Similarity=0.127 Sum_probs=104.0
Q ss_pred cCCCCccEEEeecCCCcc-----cCCCccCCCCCCCEEEccCCCCCC----CCchh------HhhcCCCCcEEEccCCCC
Q 012249 35 EWEENLERVSLMRNNIEE-----IPSNMSPHCEILSTLLLQRNENLQ----RIPEC------FFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 35 ~~l~~l~~L~l~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~----~~~~~------~~~~l~~L~~L~l~~~~~ 99 (467)
.-+..+..+++++|.+.+ +...+ .+-.+|+..+++..- .+ .++.. ..-+|++|+..+++.|.+
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~i-a~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVI-ANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHH-hhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 346788999999998862 22222 255778888877652 22 23322 235899999999999977
Q ss_pred C-C----chhhhhcCcCCCEEEcCCCCCCCcCC--Ccc-ccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCc
Q 012249 100 E-V----LPSSVSDLTNLRSLSLGWCRRLKRVP--SLA-RLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKF 171 (467)
Q Consensus 100 ~-~----l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~-~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 171 (467)
. . +-+.+++-+.|.+|.+.+| .++.+. .++ .+.+|-+. ....+-+.|+...+..|++...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~n-----------KKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYN-----------KKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHH-----------hhhccCCCceEEEeccchhccC
Confidence 6 2 3345678899999999986 455554 233 12222111 1233445677777777776555
Q ss_pred CCcc----ccCCCCCcEEEcccCCCcccc----cHHHHHhhhccCcEEEcccCCcc
Q 012249 172 PAGI----LPRLRSLYKLKLSFGNEALRE----TVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 172 ~~~~----l~~l~~L~~L~l~~~~~~~~~----~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
+... +..-.+|+++.+..|.....- ....+... ++|++|++..|.+.
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft 227 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFT 227 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-Ccceeeeccccchh
Confidence 4432 233367888888877543221 11133344 88899998877653
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.13 E-value=0.014 Score=52.09 Aligned_cols=79 Identities=28% Similarity=0.296 Sum_probs=38.2
Q ss_pred CcCCCEEEcCCCCCCCcCCCccccCCccEEEccCC--cCc-cccccccCCCCCcEEeccCCCCCC---cCCccccCCCCC
Q 012249 109 LTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDT--RIE-EVPEGMEMLENLSHLYLSSLQLKK---FPAGILPRLRSL 182 (467)
Q Consensus 109 l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~--~~~-~lp~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L 182 (467)
+..|+.+++.++ .++.+..+-.+++|+.|.++.| ++. .++--..++++|+++++++|+++. +.. +..+.+|
T Consensus 42 ~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENL 118 (260)
T ss_pred ccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcch
Confidence 444555554442 3333334445556666666666 333 222223344666666666665532 221 2445555
Q ss_pred cEEEcccC
Q 012249 183 YKLKLSFG 190 (467)
Q Consensus 183 ~~L~l~~~ 190 (467)
..|++.+|
T Consensus 119 ~~Ldl~n~ 126 (260)
T KOG2739|consen 119 KSLDLFNC 126 (260)
T ss_pred hhhhcccC
Confidence 55555555
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.11 E-value=0.012 Score=31.19 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=12.5
Q ss_pred CccEEEccCCcCccccccccC
Q 012249 134 ALQYLDLYDTRIEEVPEGMEM 154 (467)
Q Consensus 134 ~L~~L~l~~~~~~~lp~~~~~ 154 (467)
+|++|++++|.++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.0032 Score=53.84 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=39.4
Q ss_pred ccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceE
Q 012249 329 SLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEI 408 (467)
Q Consensus 329 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 408 (467)
.+..+..++.++.|.+.+|..+.+.--.. + ....|+|+.|+|++|+.+++-.... ...+++|+.|
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~------------l--~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L 181 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLER------------L--GGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRL 181 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHH------------h--cccccchheeeccCCCeechhHHHH-HHHhhhhHHH
Confidence 34445555666666666666666551111 0 1145666666666666666543321 1346666666
Q ss_pred EEeCCCCccc
Q 012249 409 EVRRCPKLKR 418 (467)
Q Consensus 409 ~i~~C~~L~~ 418 (467)
.+.+.|....
T Consensus 182 ~l~~l~~v~~ 191 (221)
T KOG3864|consen 182 HLYDLPYVAN 191 (221)
T ss_pred HhcCchhhhc
Confidence 6665554443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.84 E-value=0.02 Score=30.33 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=9.5
Q ss_pred CcEEEccCCCCCCchhhh
Q 012249 89 LKVVNLSSTDIEVLPSSV 106 (467)
Q Consensus 89 L~~L~l~~~~~~~l~~~~ 106 (467)
|++|++++|.+..+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.60 E-value=0.049 Score=26.70 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=10.1
Q ss_pred CCcceEEEeCCCCccccC
Q 012249 403 NSLQEIEVRRCPKLKRLS 420 (467)
Q Consensus 403 ~~L~~L~i~~C~~L~~lp 420 (467)
++|++|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468888888886 77765
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=0.024 Score=48.63 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=16.6
Q ss_pred ccEEEEecCCCCccccccchH-HhhhccceeeeCCccchhh
Q 012249 313 LKVLRFDSCKNLKNLFSLRLL-PALQNLKVLAVISCNSIEE 352 (467)
Q Consensus 313 L~~L~l~~c~~l~~l~~~~~~-~~l~~L~~L~l~~c~~l~~ 352 (467)
++.|.+.+|..+.++ .++-+ +-.++|+.|+|++|+.|++
T Consensus 127 i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 127 IKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred hhhheeccccchhhH-HHHHhcccccchheeeccCCCeech
Confidence 444444555444443 11111 2234455555555554444
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.78 E-value=0.21 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.720 Sum_probs=14.7
Q ss_pred cCCcceEEEeCCCCcccc
Q 012249 402 CNSLQEIEVRRCPKLKRL 419 (467)
Q Consensus 402 ~~~L~~L~i~~C~~L~~l 419 (467)
+++|++|.|++|+++++-
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 578899999999888764
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.34 E-value=0.5 Score=25.90 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=11.7
Q ss_pred CCCcEEeccCCCCCCcCCcc
Q 012249 156 ENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~ 175 (467)
++|+.|++++|.+..+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666666665544
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.34 E-value=0.5 Score=25.90 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=11.7
Q ss_pred CCCcEEeccCCCCCCcCCcc
Q 012249 156 ENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~ 175 (467)
++|+.|++++|.+..+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666666665544
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.59 E-value=0.73 Score=25.24 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=12.3
Q ss_pred CCCcEEEccCCCCCCchhhh
Q 012249 87 HGLKVVNLSSTDIEVLPSSV 106 (467)
Q Consensus 87 ~~L~~L~l~~~~~~~l~~~~ 106 (467)
++|++|++.+|++..+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666665443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.59 E-value=0.73 Score=25.24 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=12.3
Q ss_pred CCCcEEEccCCCCCCchhhh
Q 012249 87 HGLKVVNLSSTDIEVLPSSV 106 (467)
Q Consensus 87 ~~L~~L~l~~~~~~~l~~~~ 106 (467)
++|++|++.+|++..+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666665443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.94 E-value=0.035 Score=48.75 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=42.1
Q ss_pred CCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEE
Q 012249 60 HCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYL 138 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L 138 (467)
.+...+.|++++|+.. .+... |+-+..|..|+++.+.+..+|..+++...++.+++..| ..+..| +.++.++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 3445555555555422 12211 23444455555555555555555555555555555542 455555 55566666666
Q ss_pred EccCCc
Q 012249 139 DLYDTR 144 (467)
Q Consensus 139 ~l~~~~ 144 (467)
+..++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 555553
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.13 E-value=0.04 Score=48.41 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=57.0
Q ss_pred CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCC
Q 012249 33 EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNL 112 (467)
Q Consensus 33 ~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L 112 (467)
.+...+..+.|+++.|++-.+.... +-+..+..|+++.+. +..+|.++ +....++.+++..|..+..|.+.++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq-~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQ-IKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhh-HhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCc
Confidence 3445566777777776655443332 235556667777776 66677664 66777777777777777777777777777
Q ss_pred CEEEcCCCC
Q 012249 113 RSLSLGWCR 121 (467)
Q Consensus 113 ~~L~l~~~~ 121 (467)
++++..++.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 777777754
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.84 E-value=5.7 Score=21.88 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=8.3
Q ss_pred CccEEEccCCcCcccc
Q 012249 134 ALQYLDLYDTRIEEVP 149 (467)
Q Consensus 134 ~L~~L~l~~~~~~~lp 149 (467)
+|+.|++++|.++.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3455555555555554
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.88 E-value=6.1 Score=20.96 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=5.9
Q ss_pred CCccEEEccCCcCc
Q 012249 133 LALQYLDLYDTRIE 146 (467)
Q Consensus 133 ~~L~~L~l~~~~~~ 146 (467)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=49.62 E-value=15 Score=20.26 Aligned_cols=15 Identities=47% Similarity=0.525 Sum_probs=8.4
Q ss_pred CCCcEEeccCCCCCC
Q 012249 156 ENLSHLYLSSLQLKK 170 (467)
Q Consensus 156 ~~L~~L~l~~~~~~~ 170 (467)
.+|+.|+++.|+++.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.06 E-value=0.29 Score=49.17 Aligned_cols=180 Identities=21% Similarity=0.171 Sum_probs=108.2
Q ss_pred ccEEEeecCCCcccCC----CccCCCCCCCEEEccCCCCCCCCchhH---hhc-CCCCcEEEccCCCCC-----Cchhhh
Q 012249 40 LERVSLMRNNIEEIPS----NMSPHCEILSTLLLQRNENLQRIPECF---FVH-MHGLKVVNLSSTDIE-----VLPSSV 106 (467)
Q Consensus 40 l~~L~l~~~~~~~l~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~-l~~L~~L~l~~~~~~-----~l~~~~ 106 (467)
+..+.+.+|.+..-.. ......+.|..|++++|.+...--..+ +.. -+.+++|++..|.+. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777652111 122356778888888887432111111 112 245677788777665 455666
Q ss_pred hcCcCCCEEEcCCCCCCCc----CC-Ccc----ccCCccEEEccCCcCcc-----ccccccCCCC-CcEEeccCCCCCCc
Q 012249 107 SDLTNLRSLSLGWCRRLKR----VP-SLA----RLLALQYLDLYDTRIEE-----VPEGMEMLEN-LSHLYLSSLQLKKF 171 (467)
Q Consensus 107 ~~l~~L~~L~l~~~~~~~~----~p-~l~----~l~~L~~L~l~~~~~~~-----lp~~~~~l~~-L~~L~l~~~~~~~~ 171 (467)
....+++.++++.|..... ++ .+. ...++++|++.+|.++. +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 7788888888888754321 11 233 46778899998887662 2223445555 66688888876433
Q ss_pred -----CCccccCC-CCCcEEEcccCCCcccccH---HHHHhhhccCcEEEcccCCccch
Q 012249 172 -----PAGILPRL-RSLYKLKLSFGNEALRETV---EEAARLSDRLDYFEGYFSTLKDF 221 (467)
Q Consensus 172 -----~~~~l~~l-~~L~~L~l~~~~~~~~~~~---~~l~~l~~~L~~L~l~~~~~~~~ 221 (467)
.+. +..+ ..++++++..|.+...... ..+... .+++.+.++.+...+.
T Consensus 249 g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~-~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPC-LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSC-RQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHH-hcccchhhhhhhhhcCCccccchHHHHHHHhhh-HHHHHhhcccCccccH
Confidence 111 2344 5678888888866443321 123334 7888888888876543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=47.10 E-value=1.1 Score=45.05 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=37.5
Q ss_pred hcCCCCcEEEccCCCCCC-----chhhhhcC-cCCCEEEcCCCCCCCcCC-----CccccCCccEEEccCCcCc-----c
Q 012249 84 VHMHGLKVVNLSSTDIEV-----LPSSVSDL-TNLRSLSLGWCRRLKRVP-----SLARLLALQYLDLYDTRIE-----E 147 (467)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~-----l~~~~~~l-~~L~~L~l~~~~~~~~~p-----~l~~l~~L~~L~l~~~~~~-----~ 147 (467)
...+.|..|++++|++.. +-..+... ..+++|++..|....... .+.+...++.++++.|.+. .
T Consensus 112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~ 191 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV 191 (478)
T ss_pred cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence 345556666666665541 11111111 334555555543222111 2444555566666655432 1
Q ss_pred cccccc----CCCCCcEEeccCCCC
Q 012249 148 VPEGME----MLENLSHLYLSSLQL 168 (467)
Q Consensus 148 lp~~~~----~l~~L~~L~l~~~~~ 168 (467)
++..+. ...++++|.+..|.+
T Consensus 192 l~~~l~~~~~~~~~le~L~L~~~~~ 216 (478)
T KOG4308|consen 192 LSQALESAASPLSSLETLKLSRCGV 216 (478)
T ss_pred HhhhhhhhhcccccHHHHhhhhcCc
Confidence 111222 345566666665554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.06 E-value=21 Score=19.83 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=9.0
Q ss_pred CCCcEEEccCCCCC
Q 012249 87 HGLKVVNLSSTDIE 100 (467)
Q Consensus 87 ~~L~~L~l~~~~~~ 100 (467)
+.|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777776654
No 89
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=28.26 E-value=74 Score=19.87 Aligned_cols=13 Identities=38% Similarity=0.715 Sum_probs=6.5
Q ss_pred cCccccccEEEEe
Q 012249 307 GKFSHDLKVLRFD 319 (467)
Q Consensus 307 ~~~~~~L~~L~l~ 319 (467)
+.+|.+|++|.+.
T Consensus 30 ~~lP~sl~~L~fg 42 (44)
T PF05725_consen 30 GSLPNSLKSLSFG 42 (44)
T ss_pred CccCCCceEEEee
Confidence 3345455555544
Done!