Query 012249
Match_columns 467
No_of_seqs 198 out of 2663
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 05:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-25 6.2E-30 231.6 21.3 173 17-192 13-193 (606)
2 4ecn_A Leucine-rich repeat pro 99.9 1.2E-25 4.1E-30 238.1 17.4 363 25-451 435-843 (876)
3 3t6q_A CD180 antigen; protein- 99.9 3.9E-24 1.3E-28 221.6 24.4 174 17-194 14-193 (606)
4 2z63_A TOLL-like receptor 4, v 99.9 1.3E-24 4.4E-29 223.6 19.7 171 17-191 9-188 (570)
5 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-24 6.5E-29 224.0 20.7 173 19-193 36-217 (606)
6 4fmz_A Internalin; leucine ric 99.9 1.2E-23 4E-28 202.6 24.1 172 35-219 41-212 (347)
7 4eco_A Uncharacterized protein 99.9 9.1E-25 3.1E-29 226.9 17.1 196 19-219 210-446 (636)
8 3rgz_A Protein brassinosteroid 99.9 1.4E-24 4.7E-29 230.6 18.3 358 36-443 176-546 (768)
9 3t6q_A CD180 antigen; protein- 99.9 5.3E-24 1.8E-28 220.6 21.9 194 20-218 86-337 (606)
10 3rgz_A Protein brassinosteroid 99.9 4.7E-25 1.6E-29 234.2 14.1 356 38-422 294-723 (768)
11 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-24 5.6E-29 220.3 16.6 376 18-443 3-476 (520)
12 1o6v_A Internalin A; bacterial 99.9 2.7E-23 9.3E-28 208.2 24.7 179 24-218 55-233 (466)
13 3v47_A TOLL-like receptor 5B a 99.9 1.4E-23 4.9E-28 209.7 22.5 354 19-443 14-403 (455)
14 2z63_A TOLL-like receptor 4, v 99.9 1.8E-23 6.1E-28 215.0 21.8 149 19-168 32-189 (570)
15 4fmz_A Internalin; leucine ric 99.9 3.2E-23 1.1E-27 199.6 21.9 185 20-218 49-233 (347)
16 4eco_A Uncharacterized protein 99.9 4E-24 1.4E-28 222.1 16.7 316 78-443 198-574 (636)
17 4ecn_A Leucine-rich repeat pro 99.9 7.5E-24 2.6E-28 224.4 17.6 316 78-443 440-814 (876)
18 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-23 6.6E-28 213.8 19.7 196 20-220 10-210 (549)
19 1ziw_A TOLL-like receptor 3; i 99.9 9.8E-23 3.3E-27 214.0 25.1 192 19-216 8-205 (680)
20 1ziw_A TOLL-like receptor 3; i 99.9 8.5E-23 2.9E-27 214.4 24.3 171 19-190 29-205 (680)
21 2id5_A Lingo-1, leucine rich r 99.9 2.6E-23 8.8E-28 209.1 18.6 195 19-218 15-212 (477)
22 3o6n_A APL1; leucine-rich repe 99.9 4.9E-23 1.7E-27 201.6 19.7 300 37-443 44-347 (390)
23 3j0a_A TOLL-like receptor 5; m 99.9 6.7E-23 2.3E-27 219.9 21.8 151 18-171 7-163 (844)
24 2z81_A CD282 antigen, TOLL-lik 99.9 6E-23 2E-27 210.1 19.8 374 19-443 30-505 (549)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-22 5.5E-27 207.4 22.1 379 18-443 34-505 (562)
26 1o6v_A Internalin A; bacterial 99.9 5.5E-22 1.9E-26 198.7 24.0 318 19-422 72-393 (466)
27 3o6n_A APL1; leucine-rich repe 99.9 1.8E-22 6.3E-27 197.5 19.6 299 19-414 49-350 (390)
28 3oja_B Anopheles plasmodium-re 99.9 3.3E-22 1.1E-26 206.4 20.0 103 307-443 251-353 (597)
29 3bz5_A Internalin-J, INLJ; leu 99.9 5.5E-22 1.9E-26 197.5 19.0 167 33-219 37-204 (457)
30 2id5_A Lingo-1, leucine rich r 99.9 3.6E-22 1.2E-26 200.7 17.1 198 19-219 36-237 (477)
31 2z7x_B TOLL-like receptor 1, v 99.9 9.7E-22 3.3E-26 199.8 20.2 143 41-192 3-150 (520)
32 3bz5_A Internalin-J, INLJ; leu 99.9 8.6E-22 2.9E-26 196.1 19.0 308 19-419 46-354 (457)
33 3oja_B Anopheles plasmodium-re 99.9 1.1E-21 3.7E-26 202.5 19.3 174 36-221 49-226 (597)
34 3j0a_A TOLL-like receptor 5; m 99.9 7.6E-21 2.6E-25 203.9 21.7 371 27-421 61-521 (844)
35 3v47_A TOLL-like receptor 5B a 99.9 2E-20 6.9E-25 186.8 22.8 346 41-443 13-379 (455)
36 4fcg_A Uncharacterized protein 99.9 2.6E-21 9E-26 184.3 14.5 176 37-218 80-265 (328)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.9E-21 3.4E-25 194.1 18.3 147 37-192 30-181 (562)
38 2ft3_A Biglycan; proteoglycan, 99.8 4.6E-20 1.6E-24 176.3 19.5 306 25-414 14-331 (332)
39 2z80_A TOLL-like receptor 2, v 99.8 3.4E-20 1.1E-24 178.8 17.3 196 19-220 35-236 (353)
40 1jl5_A Outer protein YOPM; leu 99.8 1.9E-19 6.3E-24 179.1 22.6 178 18-220 74-251 (454)
41 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-19 4.5E-24 188.4 22.4 154 20-177 36-194 (635)
42 1jl5_A Outer protein YOPM; leu 99.8 4.3E-19 1.5E-23 176.5 24.4 156 40-219 73-228 (454)
43 1xku_A Decorin; proteoglycan, 99.8 1.9E-19 6.4E-24 171.9 19.6 190 20-220 36-230 (330)
44 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-19 5.8E-24 187.6 20.9 130 19-149 56-189 (635)
45 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-20 1.1E-24 175.7 13.4 172 39-216 51-231 (313)
46 4fcg_A Uncharacterized protein 99.8 1.9E-19 6.5E-24 171.5 18.7 194 18-218 84-289 (328)
47 1ozn_A Reticulon 4 receptor; N 99.8 7.2E-19 2.5E-23 164.2 21.5 195 19-218 15-213 (285)
48 2ft3_A Biglycan; proteoglycan, 99.8 2E-19 6.8E-24 171.9 16.5 190 19-220 37-231 (332)
49 3zyj_A Leucine-rich repeat-con 99.8 6.5E-19 2.2E-23 175.0 20.8 191 20-218 48-243 (440)
50 1xku_A Decorin; proteoglycan, 99.8 5.5E-19 1.9E-23 168.7 19.0 123 39-168 32-157 (330)
51 3zyi_A Leucine-rich repeat-con 99.8 7.1E-19 2.4E-23 175.3 20.6 191 20-218 59-254 (452)
52 1ogq_A PGIP-2, polygalacturona 99.8 9.2E-20 3.2E-24 172.6 11.4 193 20-218 55-256 (313)
53 2o6q_A Variable lymphocyte rec 99.8 2E-18 7E-23 159.8 19.8 194 19-218 20-217 (270)
54 2z66_A Variable lymphocyte rec 99.8 3E-19 1E-23 168.6 14.0 192 20-219 12-212 (306)
55 3zyj_A Leucine-rich repeat-con 99.8 5.9E-19 2E-23 175.3 15.8 198 19-220 68-269 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 7.8E-19 2.7E-23 175.1 16.4 198 19-220 79-280 (452)
57 1ozn_A Reticulon 4 receptor; N 99.8 5.3E-18 1.8E-22 158.3 19.9 198 19-219 36-238 (285)
58 2z66_A Variable lymphocyte rec 99.8 1.5E-18 5.1E-23 163.8 15.0 172 41-218 10-187 (306)
59 2z80_A TOLL-like receptor 2, v 99.8 2.4E-19 8.2E-24 172.8 9.4 175 19-194 56-236 (353)
60 3g06_A SSPH2 (leucine-rich rep 99.8 4.2E-17 1.4E-21 167.3 22.6 150 19-192 44-193 (622)
61 3ogk_B Coronatine-insensitive 99.8 1.5E-18 5.2E-23 179.1 10.5 302 84-443 217-546 (592)
62 3o53_A Protein LRIM1, AGAP0063 99.8 2.9E-19 9.8E-24 169.5 4.6 170 40-219 12-182 (317)
63 1p9a_G Platelet glycoprotein I 99.7 2.7E-17 9.4E-22 153.6 17.5 191 19-218 14-207 (290)
64 1z7x_W Ribonuclease inhibitor; 99.7 1.2E-19 4.2E-24 181.4 0.6 335 34-418 24-412 (461)
65 2xwt_C Thyrotropin receptor; s 99.7 1.4E-17 4.6E-22 151.3 13.5 192 24-221 20-220 (239)
66 2o6q_A Variable lymphocyte rec 99.7 9.9E-17 3.4E-21 148.4 19.5 174 19-194 41-219 (270)
67 2z62_A TOLL-like receptor 4, v 99.7 1.9E-17 6.6E-22 153.7 14.5 194 20-219 12-213 (276)
68 3g06_A SSPH2 (leucine-rich rep 99.7 4.8E-16 1.6E-20 159.5 26.1 155 39-220 41-195 (622)
69 3m19_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 145.2 20.1 173 19-195 18-194 (251)
70 3rfs_A Internalin B, repeat mo 99.7 3.9E-17 1.3E-21 151.3 15.2 177 34-218 37-217 (272)
71 1h6u_A Internalin H; cell adhe 99.7 1.3E-16 4.3E-21 150.6 18.1 168 37-218 40-207 (308)
72 2z62_A TOLL-like receptor 4, v 99.7 6.7E-17 2.3E-21 150.0 15.3 197 19-219 32-237 (276)
73 1p9a_G Platelet glycoprotein I 99.7 1.3E-16 4.3E-21 149.1 16.5 179 34-220 6-186 (290)
74 1z7x_W Ribonuclease inhibitor; 99.7 6.4E-19 2.2E-23 176.2 -0.2 349 38-443 3-406 (461)
75 2xwt_C Thyrotropin receptor; s 99.7 5.4E-17 1.8E-21 147.3 12.5 191 19-216 35-236 (239)
76 3ogk_B Coronatine-insensitive 99.7 1.5E-18 5.2E-23 179.1 2.4 366 36-443 110-521 (592)
77 1h6u_A Internalin H; cell adhe 99.7 1.9E-16 6.6E-21 149.3 16.4 184 20-218 46-229 (308)
78 3o53_A Protein LRIM1, AGAP0063 99.7 2.9E-18 9.8E-23 162.6 3.0 171 35-218 31-203 (317)
79 4ay9_X Follicle-stimulating ho 99.7 3.2E-16 1.1E-20 150.6 16.3 196 19-219 13-215 (350)
80 3rfs_A Internalin B, repeat mo 99.7 8.7E-16 3E-20 142.1 18.4 170 20-194 46-219 (272)
81 3m19_A Variable lymphocyte rec 99.7 7.1E-16 2.4E-20 141.0 16.9 174 39-219 15-192 (251)
82 3oja_A Leucine-rich immune mol 99.7 3.9E-16 1.3E-20 156.7 13.9 148 61-218 33-181 (487)
83 2p1m_B Transport inhibitor res 99.7 1.3E-17 4.5E-22 172.1 2.5 126 37-164 104-243 (594)
84 1h6t_A Internalin B; cell adhe 99.7 1.6E-15 5.5E-20 141.7 15.3 171 35-219 43-213 (291)
85 1wwl_A Monocyte differentiatio 99.6 1E-15 3.5E-20 144.7 12.2 178 36-220 93-288 (312)
86 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.7E-19 136.1 17.4 164 19-193 50-213 (291)
87 2ast_B S-phase kinase-associat 99.6 5.1E-16 1.8E-20 148.3 7.9 172 39-217 48-233 (336)
88 2xot_A Amphoterin-induced prot 99.6 3.1E-15 1.1E-19 144.3 13.3 171 41-218 21-201 (361)
89 3oja_A Leucine-rich immune mol 99.6 2.5E-15 8.6E-20 150.7 13.1 185 20-219 39-227 (487)
90 2o6s_A Variable lymphocyte rec 99.6 6.1E-15 2.1E-19 130.7 13.9 127 63-191 29-159 (208)
91 4ezg_A Putative uncharacterize 99.6 4.2E-15 1.4E-19 130.5 12.1 148 36-191 42-192 (197)
92 3e6j_A Variable lymphocyte rec 99.6 1.8E-14 6.2E-19 129.6 16.5 151 40-195 21-174 (229)
93 1wwl_A Monocyte differentiatio 99.6 5.8E-15 2E-19 139.5 13.7 191 19-219 99-309 (312)
94 4ay9_X Follicle-stimulating ho 99.6 5E-15 1.7E-19 142.2 13.5 104 41-148 12-119 (350)
95 2v70_A SLIT-2, SLIT homolog 2 99.6 1.3E-14 4.5E-19 129.6 15.1 156 41-201 14-174 (220)
96 4glp_A Monocyte differentiatio 99.6 6E-15 2.1E-19 139.2 13.0 153 39-192 92-263 (310)
97 2ca6_A RAN GTPase-activating p 99.6 1.7E-16 5.9E-21 154.7 2.3 196 23-219 17-257 (386)
98 2ast_B S-phase kinase-associat 99.6 9.9E-16 3.4E-20 146.3 7.5 176 38-217 70-258 (336)
99 3e6j_A Variable lymphocyte rec 99.6 2.8E-14 9.4E-19 128.4 16.2 146 20-169 24-172 (229)
100 2v9t_B SLIT homolog 2 protein 99.6 2.1E-14 7.1E-19 128.3 15.0 151 41-196 14-168 (220)
101 2v9t_B SLIT homolog 2 protein 99.6 2.4E-14 8.4E-19 127.9 15.4 147 19-168 15-164 (220)
102 1m9s_A Internalin B; cell inva 99.6 9.3E-15 3.2E-19 149.7 14.3 173 34-220 39-211 (605)
103 2p1m_B Transport inhibitor res 99.6 4.2E-16 1.4E-20 160.8 3.8 129 84-215 102-244 (594)
104 1xeu_A Internalin C; cellular 99.6 1.8E-14 6.3E-19 132.4 13.3 165 39-218 20-184 (263)
105 4ezg_A Putative uncharacterize 99.6 2.8E-14 9.7E-19 125.2 13.4 147 19-170 48-195 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 4.4E-14 1.5E-18 126.2 14.9 148 19-169 15-166 (220)
107 2o6s_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 121.5 17.0 165 20-195 12-180 (208)
108 2xot_A Amphoterin-induced prot 99.5 5.4E-14 1.9E-18 135.6 15.1 174 19-195 22-204 (361)
109 1m9s_A Internalin B; cell inva 99.5 7.6E-14 2.6E-18 143.0 16.2 164 20-194 48-211 (605)
110 1xeu_A Internalin C; cellular 99.5 7.9E-15 2.7E-19 134.8 7.9 158 25-194 29-186 (263)
111 3goz_A Leucine-rich repeat-con 99.5 3.3E-15 1.1E-19 144.3 4.8 182 36-219 20-238 (362)
112 4glp_A Monocyte differentiatio 99.5 3.6E-14 1.2E-18 133.9 11.7 193 18-219 94-307 (310)
113 3cvr_A Invasion plasmid antige 99.5 2E-13 6.9E-18 138.4 17.9 175 19-220 63-244 (571)
114 2ca6_A RAN GTPase-activating p 99.5 7.5E-15 2.6E-19 143.1 5.5 158 60-218 30-228 (386)
115 3goz_A Leucine-rich repeat-con 99.5 6.1E-14 2.1E-18 135.3 9.0 173 43-218 3-208 (362)
116 3cvr_A Invasion plasmid antige 99.5 1.2E-12 4E-17 132.7 17.1 163 19-204 84-253 (571)
117 2ell_A Acidic leucine-rich nuc 99.4 4.2E-13 1.5E-17 114.4 10.8 131 38-173 24-164 (168)
118 2ell_A Acidic leucine-rich nuc 99.4 3.6E-13 1.2E-17 114.9 10.2 131 60-192 22-159 (168)
119 4b8c_D Glucose-repressible alc 99.4 2.5E-13 8.7E-18 142.5 9.9 157 37-196 172-332 (727)
120 2je0_A Acidic leucine-rich nuc 99.4 2.7E-13 9.1E-18 113.2 7.9 106 39-149 18-129 (149)
121 2wfh_A SLIT homolog 2 protein 99.4 3.9E-12 1.3E-16 110.9 14.1 126 65-195 13-141 (193)
122 1w8a_A SLIT protein; signaling 99.4 4.8E-12 1.7E-16 110.3 13.3 108 88-195 30-141 (192)
123 1dce_A Protein (RAB geranylger 99.4 1.4E-13 4.7E-18 140.2 2.8 178 35-218 346-545 (567)
124 1w8a_A SLIT protein; signaling 99.4 7.2E-12 2.4E-16 109.2 12.9 125 41-169 11-139 (192)
125 4b8c_D Glucose-repressible alc 99.3 3.3E-13 1.1E-17 141.6 4.9 117 54-173 216-333 (727)
126 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.6E-17 107.5 8.9 126 61-188 16-148 (149)
127 1a9n_A U2A', U2A'; complex (nu 99.3 3.4E-12 1.2E-16 109.6 9.1 127 60-190 17-150 (176)
128 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-11 4.1E-16 106.2 10.6 134 83-219 15-153 (176)
129 2o6r_A Variable lymphocyte rec 99.3 5.1E-11 1.7E-15 102.3 13.8 108 87-195 28-139 (177)
130 2wfh_A SLIT homolog 2 protein 99.3 5E-11 1.7E-15 103.8 13.9 122 41-168 13-138 (193)
131 2o6r_A Variable lymphocyte rec 99.3 8.4E-11 2.9E-15 100.9 13.8 126 40-170 9-138 (177)
132 1dce_A Protein (RAB geranylger 99.2 2.6E-11 9E-16 123.4 11.9 186 22-213 356-567 (567)
133 3sb4_A Hypothetical leucine ri 99.1 1.4E-10 4.6E-15 110.2 10.2 179 37-221 48-312 (329)
134 1ds9_A Outer arm dynein; leuci 99.1 8.7E-13 3E-17 115.7 -4.7 131 77-212 39-180 (198)
135 1ds9_A Outer arm dynein; leuci 99.1 5.7E-13 2E-17 116.9 -6.3 143 39-186 24-180 (198)
136 2r9u_A Variable lymphocyte rec 99.1 7E-10 2.4E-14 94.8 11.3 102 90-193 15-118 (174)
137 3g39_A Variable lymphocyte rec 99.1 7.2E-10 2.5E-14 94.3 11.2 105 89-195 11-117 (170)
138 2r9u_A Variable lymphocyte rec 99.1 9.2E-10 3.1E-14 94.0 11.2 105 41-150 15-122 (174)
139 3sb4_A Hypothetical leucine ri 99.1 6.7E-10 2.3E-14 105.4 11.1 170 37-213 100-328 (329)
140 3g39_A Variable lymphocyte rec 99.0 1.7E-09 6E-14 91.9 11.1 102 40-146 11-115 (170)
141 2ifg_A High affinity nerve gro 98.8 1.7E-08 5.7E-13 96.5 10.8 112 91-204 12-127 (347)
142 4fdw_A Leucine rich hypothetic 98.8 4.2E-08 1.4E-12 95.3 13.7 171 33-214 131-308 (401)
143 4fdw_A Leucine rich hypothetic 98.7 5.9E-08 2E-12 94.3 12.2 177 27-215 146-332 (401)
144 3un9_A NLR family member X1; l 98.7 1.1E-09 3.9E-14 105.3 -0.3 36 133-168 155-195 (372)
145 2ifg_A High affinity nerve gro 98.7 3.5E-08 1.2E-12 94.2 10.1 98 21-120 14-113 (347)
146 3un9_A NLR family member X1; l 98.7 4.7E-09 1.6E-13 101.0 3.9 165 38-204 72-262 (372)
147 4fs7_A Uncharacterized protein 98.6 7.3E-07 2.5E-11 86.6 13.9 147 34-189 67-217 (394)
148 3e4g_A ATP synthase subunit S, 98.5 5.8E-08 2E-12 81.7 3.1 93 312-419 62-155 (176)
149 2ra8_A Uncharacterized protein 98.2 6.2E-07 2.1E-11 85.5 4.5 14 155-168 251-264 (362)
150 3e4g_A ATP synthase subunit S, 98.1 1.6E-05 5.6E-10 66.7 9.1 83 63-146 62-153 (176)
151 2ra8_A Uncharacterized protein 98.0 6.2E-06 2.1E-10 78.6 5.8 176 33-216 134-340 (362)
152 1io0_A Tropomodulin; LRR prote 98.0 6.8E-06 2.3E-10 70.5 5.1 84 84-168 33-135 (185)
153 1io0_A Tropomodulin; LRR prote 97.9 1.1E-05 3.8E-10 69.2 4.8 109 58-168 32-163 (185)
154 4gt6_A Cell surface protein; l 97.7 0.0012 4.1E-08 63.7 16.3 151 33-189 58-214 (394)
155 3rw6_A Nuclear RNA export fact 97.5 0.00014 4.8E-09 65.7 6.3 62 84-146 167-233 (267)
156 4fs7_A Uncharacterized protein 97.4 0.0012 4.2E-08 63.7 12.7 169 33-214 203-374 (394)
157 3rw6_A Nuclear RNA export fact 97.3 0.0004 1.4E-08 62.7 7.5 78 60-139 168-257 (267)
158 4h09_A Hypothetical leucine ri 97.2 0.003 1E-07 60.5 12.4 145 60-213 192-340 (379)
159 4h09_A Hypothetical leucine ri 97.1 0.0027 9.3E-08 60.8 11.4 148 36-190 192-343 (379)
160 4gt6_A Cell surface protein; l 97.0 0.0022 7.6E-08 61.8 9.5 142 39-190 243-388 (394)
161 3rfe_A Platelet glycoprotein I 95.5 0.036 1.2E-06 43.9 7.0 58 136-195 11-70 (130)
162 3rfe_A Platelet glycoprotein I 95.5 0.022 7.6E-07 45.1 5.7 55 42-100 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.0 0.097 3.3E-06 44.6 6.3 16 105-120 65-80 (197)
164 1pgv_A TMD-1, tropomodulin TMD 93.4 0.14 4.8E-06 43.5 6.2 113 105-218 36-169 (197)
165 2lz0_A Uncharacterized protein 70.8 4.5 0.00015 29.9 4.0 39 33-72 15-53 (100)
166 2lz0_A Uncharacterized protein 54.6 20 0.00068 26.3 4.9 50 47-98 5-54 (100)
167 2a5y_B CED-4; apoptosis; HET: 31.6 9.8 0.00034 37.9 -0.0 17 1-17 456-472 (549)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.8e-25 Score=231.63 Aligned_cols=173 Identities=22% Similarity=0.241 Sum_probs=138.2
Q ss_pred CceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccC
Q 012249 17 PLFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSS 96 (467)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (467)
...+...+.++..+|..+. +++++|++++|.+..++...+.++++|+.|++++|. +..+++..|.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCC
Confidence 3456777888999998665 689999999999998888777799999999999997 5666555568999999999999
Q ss_pred CCCCCc-hhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCc--cccccccCCCCCcEEeccCCCCCCcC
Q 012249 97 TDIEVL-PSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIE--EVPEGMEMLENLSHLYLSSLQLKKFP 172 (467)
Q Consensus 97 ~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~ 172 (467)
|.+..+ |..++++++|++|++++|......+ .++++++|++|++++|.++ .+|..++++++|++|++++|.+..++
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 999876 7888999999999999975444343 6899999999999999887 47888999999999999999887766
Q ss_pred CccccCCCCCc----EEEcccCCC
Q 012249 173 AGILPRLRSLY----KLKLSFGNE 192 (467)
Q Consensus 173 ~~~l~~l~~L~----~L~l~~~~~ 192 (467)
...++.+++|+ .|+++.|..
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCC
T ss_pred hhhhhhhhccccccceeeccCCCc
Confidence 54334443333 555555543
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.2e-25 Score=238.14 Aligned_cols=363 Identities=13% Similarity=0.132 Sum_probs=251.6
Q ss_pred CCcccCCcCccCCCCccEEEeecCCCcc------------------cCCCc-cCCCCCCCEEEccCCCCCCCCchhHhhc
Q 012249 25 LRLLEFPGEQEWEENLERVSLMRNNIEE------------------IPSNM-SPHCEILSTLLLQRNENLQRIPECFFVH 85 (467)
Q Consensus 25 ~~l~~~~~~~~~l~~l~~L~l~~~~~~~------------------l~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (467)
+++..+|..+..+++|+.|++++|.+.. +|..+ +.++++|+.|++++|.+...+|..+ .+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hC
Confidence 4455589999999999999999999987 77765 3379999999999998888888664 89
Q ss_pred CCCCcEEEccCCC-CCC--chhhhhcCc-------CCCEEEcCCCCCCCcCCC---ccccCCccEEEccCCcCccccccc
Q 012249 86 MHGLKVVNLSSTD-IEV--LPSSVSDLT-------NLRSLSLGWCRRLKRVPS---LARLLALQYLDLYDTRIEEVPEGM 152 (467)
Q Consensus 86 l~~L~~L~l~~~~-~~~--l~~~~~~l~-------~L~~L~l~~~~~~~~~p~---l~~l~~L~~L~l~~~~~~~lp~~~ 152 (467)
+++|++|++++|. +.. +|..++.+. +|++|++++|. +..+|. ++++++|++|++++|.++.+| .+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~ 591 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AF 591 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hh
Confidence 9999999999998 874 888777766 99999999975 447775 889999999999999999998 89
Q ss_pred cCCCCCcEEeccCCCCCCcCCccccCCCC-CcEEEcccCCCcccccHHHHHhh-hccCcEEEcccCCccchhhhhhccCC
Q 012249 153 EMLENLSHLYLSSLQLKKFPAGILPRLRS-LYKLKLSFGNEALRETVEEAARL-SDRLDYFEGYFSTLKDFNIYVKSTDG 230 (467)
Q Consensus 153 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l-~~~L~~L~l~~~~~~~~~~~~~~~~~ 230 (467)
+.+++|+.|++++|.+..+|..+ .++++ |+.|++++|.... .+ ..+..+ .++|+.|+++.|.+......+.
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l-~~l~~~L~~L~Ls~N~L~~-lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~---- 664 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDF-CAFTDQVEGLGFSHNKLKY-IP-NIFNAKSVYVMGSVDFSYNKIGSEGRNIS---- 664 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTS-CEECTTCCEEECCSSCCCS-CC-SCCCTTCSSCEEEEECCSSCTTTTSSSCS----
T ss_pred cCCCcceEEECcCCccccchHHH-hhccccCCEEECcCCCCCc-Cc-hhhhccccCCCCEEECcCCcCCCccccch----
Confidence 99999999999999999888875 88888 9999999997652 22 233444 0349999999887643210000
Q ss_pred CCChhhhhhhhhcCCCccccccccccceeeeecCccccchhhh------hhhcccceeeeeecccccccccccccccccc
Q 012249 231 RGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKETI------VLLKDVQCLQMFEVDEVTSLNDVLPRELGLV 304 (467)
Q Consensus 231 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~------~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~ 304 (467)
..+ + .....+|+.|+++++.... ...+.++.|.+.++. ++.+..... .....
T Consensus 665 -~~l---------~----------~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~-~~~~~ 722 (876)
T 4ecn_A 665 -CSM---------D----------DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSL-KPKDG 722 (876)
T ss_dssp -SCT---------T----------TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSS-SCTTS
T ss_pred -hhh---------c----------cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHh-ccccc
Confidence 000 0 0122356666666655221 123456777666552 222211000 00000
Q ss_pred cccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccc
Q 012249 305 NIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRF 384 (467)
Q Consensus 305 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 384 (467)
....++. |+.|+|++| .++.++.......+++|+.|++++| .+..++... ..+++|+.|++
T Consensus 723 ~l~nl~~-L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l----------------~~L~~L~~L~L 783 (876)
T 4ecn_A 723 NYKNTYL-LTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQP----------------LNSSQLKAFGI 783 (876)
T ss_dssp CCTTGGG-CCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG----------------GGCTTCCEEEC
T ss_pred cccccCC-ccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhh----------------hcCCCCCEEEC
Confidence 0112336 999999997 4455532211137899999999985 555542221 27899999999
Q ss_pred cccc------cccccccCCCccccCCcceEEEeCCCCccccCCccCcccCCCCCCCCcceeeeehHHHhhhcc
Q 012249 385 YDLP------EFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLSLSLPLLDHGQPSPPAALKVIKIEKELWESLD 451 (467)
Q Consensus 385 ~~~~------~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~~~~~~~~~L~~l~i~~~~~~~l~ 451 (467)
.+++ -...++... ..+++|++|.+.+|. ++.+|..+ +++|+.|++...-+..++
T Consensus 784 s~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~-L~~Ip~~l----------~~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSND-IRKVDEKL----------TPQLYILDIADNPNISID 843 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSCC----------CSSSCEEECCSCTTCEEE
T ss_pred CCCCCcccccccccChHHH--hcCCCCCEEECCCCC-CCccCHhh----------cCCCCEEECCCCCCCccC
Confidence 7743 233444444 568999999999985 58888764 248888888843343433
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.9e-24 Score=221.59 Aligned_cols=174 Identities=19% Similarity=0.127 Sum_probs=134.8
Q ss_pred CceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccC
Q 012249 17 PLFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSS 96 (467)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (467)
...+...+.++..+|..+.. ++++|++++|.++.++...+.++++|++|++++|. +..+++..|.++++|++|++++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCC
Confidence 34566677788888876654 78999999999988766667789999999999987 4555444568899999999999
Q ss_pred CCCCCc-hhhhhcCcCCCEEEcCCCCCCCcC-C-CccccCCccEEEccCCcCcccc-ccccCCCCCcEEeccCCCCCCcC
Q 012249 97 TDIEVL-PSSVSDLTNLRSLSLGWCRRLKRV-P-SLARLLALQYLDLYDTRIEEVP-EGMEMLENLSHLYLSSLQLKKFP 172 (467)
Q Consensus 97 ~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~-p-~l~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~ 172 (467)
|.+..+ |..++.+++|++|++++|. +..+ + .++.+++|++|++++|.++.++ ..+..+++|++|++++|.+..++
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 988855 6778889999999999874 4444 4 6888899999999999888653 23445889999999998888776
Q ss_pred CccccCCCCCc--EEEcccCCCcc
Q 012249 173 AGILPRLRSLY--KLKLSFGNEAL 194 (467)
Q Consensus 173 ~~~l~~l~~L~--~L~l~~~~~~~ 194 (467)
...++.+++|+ .|++++|....
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCE
T ss_pred hhhhhhhcccceeEEecCCCccCc
Confidence 65567888888 77887775543
No 4
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=223.55 Aligned_cols=171 Identities=23% Similarity=0.268 Sum_probs=134.5
Q ss_pred CceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccC
Q 012249 17 PLFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSS 96 (467)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (467)
.......+.++.++|..+. +++++|++++|.++.++...+.++++|+.|++++|. +..++...|.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcC
Confidence 3456666777888887553 478999999999988777667789999999999997 6667666678899999999999
Q ss_pred CCCCCch-hhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcc--ccccccCCCCCcEEeccCCCCCCc
Q 012249 97 TDIEVLP-SSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEE--VPEGMEMLENLSHLYLSSLQLKKF 171 (467)
Q Consensus 97 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~ 171 (467)
|.+..++ ..+..+++|++|++++| .+..++ .++++++|++|++++|.++. +|..++++++|++|++++|.+..+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CcCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 9988664 67888999999999986 455555 58899999999999998875 688889999999999999888776
Q ss_pred CCccccCCCCC----cEEEcccCC
Q 012249 172 PAGILPRLRSL----YKLKLSFGN 191 (467)
Q Consensus 172 ~~~~l~~l~~L----~~L~l~~~~ 191 (467)
+...++.+++| ..+++++|.
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCC
T ss_pred cHHHccchhccchhhhhcccCCCC
Confidence 65444555555 556665553
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.9e-24 Score=223.95 Aligned_cols=173 Identities=18% Similarity=0.164 Sum_probs=141.9
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..++. .+..+++|++|++++|.+..++...+.++++|++|++++|. +..+++..|+++++|++|++++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence 45667777877776 78899999999999999998877777799999999999998 55554445689999999999999
Q ss_pred CCCCch-hhhhcCcCCCEEEcCCCCCCC-cCC-CccccCCccEEEccCCcCcccc-ccccCCCCCc----EEeccCCCCC
Q 012249 98 DIEVLP-SSVSDLTNLRSLSLGWCRRLK-RVP-SLARLLALQYLDLYDTRIEEVP-EGMEMLENLS----HLYLSSLQLK 169 (467)
Q Consensus 98 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~-~~p-~l~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~----~L~l~~~~~~ 169 (467)
.+..++ ..++++++|++|++++|.... .+| .++++++|++|++++|.++.++ ..++.+.+|+ .+++++|.+.
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc
Confidence 998775 678999999999999986544 467 7999999999999999988764 4466666554 8999999998
Q ss_pred CcCCccccCCCCCcEEEcccCCCc
Q 012249 170 KFPAGILPRLRSLYKLKLSFGNEA 193 (467)
Q Consensus 170 ~~~~~~l~~l~~L~~L~l~~~~~~ 193 (467)
.++...+.. .+|+.|++++|...
T Consensus 195 ~~~~~~~~~-~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 195 FIQDQAFQG-IKLHELTLRGNFNS 217 (606)
T ss_dssp EECTTTTTT-CEEEEEEEESCCSC
T ss_pred eeCcccccC-ceeeeeeccCCccc
Confidence 888877444 48889988887554
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.2e-23 Score=202.58 Aligned_cols=172 Identities=21% Similarity=0.298 Sum_probs=128.2
Q ss_pred cCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCE
Q 012249 35 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRS 114 (467)
Q Consensus 35 ~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 114 (467)
..++++++++++++.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+..++ .+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccchh--hhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 456688888888888877754 3468888888888886 555655 578888888888888888775 4788888888
Q ss_pred EEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcc
Q 012249 115 LSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEAL 194 (467)
Q Consensus 115 L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 194 (467)
|++++| .+...+.+..+++|++|++++|.....+..+..+++|++|++++|.+..++. +..+++|+.|++++|....
T Consensus 115 L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 115 LYLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp EECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred EECcCC-cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 888886 4555666778888888888888443333457888888888888888777666 4788888888888876544
Q ss_pred cccHHHHHhhhccCcEEEcccCCcc
Q 012249 195 RETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 195 ~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
.. .+..+ ++|+.++++.+...
T Consensus 192 ~~---~~~~l-~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 192 IS---PLASL-TSLHYFTAYVNQIT 212 (347)
T ss_dssp CG---GGGGC-TTCCEEECCSSCCC
T ss_pred cc---cccCC-CccceeecccCCCC
Confidence 32 26777 88888888777653
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=9.1e-25 Score=226.92 Aligned_cols=196 Identities=10% Similarity=0.158 Sum_probs=164.7
Q ss_pred eEEEcCCCccc------------------CCcCcc--CCCCccEEEeecCCCc-ccCCCccCCCCCCCEEEccCCC-CCC
Q 012249 19 FMVKAGLRLLE------------------FPGEQE--WEENLERVSLMRNNIE-EIPSNMSPHCEILSTLLLQRNE-NLQ 76 (467)
Q Consensus 19 ~~~~~~~~l~~------------------~~~~~~--~l~~l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~-~~~ 76 (467)
.+..+++.+.. +|..+. .+++|++|++++|.+. .+|..+ .++++|+.|++++|. +.+
T Consensus 210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISG 288 (636)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCH
T ss_pred EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCcc
Confidence 45666777888 999999 9999999999999876 566554 489999999999997 554
Q ss_pred -CCchhHhhcC------CCCcEEEccCCCCCCchh--hhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCcc
Q 012249 77 -RIPECFFVHM------HGLKVVNLSSTDIEVLPS--SVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEE 147 (467)
Q Consensus 77 -~~~~~~~~~l------~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~ 147 (467)
.+|..+ +.+ ++|++|++++|.+..+|. .++.+++|++|++++|...+.+|.++.+++|++|++++|.++.
T Consensus 289 ~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~ 367 (636)
T 4eco_A 289 EQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367 (636)
T ss_dssp HHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEE
T ss_pred ccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcccc
Confidence 577765 454 999999999999999998 8999999999999998655488889999999999999999999
Q ss_pred ccccccCCCC-CcEEeccCCCCCCcCCccccCCC--CCcEEEcccCCCcccccHHHHH-------hhhccCcEEEcccCC
Q 012249 148 VPEGMEMLEN-LSHLYLSSLQLKKFPAGILPRLR--SLYKLKLSFGNEALRETVEEAA-------RLSDRLDYFEGYFST 217 (467)
Q Consensus 148 lp~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~l~-------~l~~~L~~L~l~~~~ 217 (467)
+|..++.+++ |++|++++|.+..+|..+ ..+. +|+.|++++|......+ ..++ .+ .+|+.|+++.+.
T Consensus 368 lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~-~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~-~~L~~L~Ls~N~ 444 (636)
T 4eco_A 368 IPANFCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKG-INVSSINLSNNQ 444 (636)
T ss_dssp CCTTSEEECTTCCEEECCSSCCSSCCSCC-CTTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCC-CCEEEEECCSSC
T ss_pred ccHhhhhhcccCcEEEccCCcCcccchhh-hhcccCccCEEECcCCcCCCcch-hhhcccccccccC-CCCCEEECcCCc
Confidence 9999999999 999999999999998865 5544 89999999997655332 2344 55 689999998887
Q ss_pred cc
Q 012249 218 LK 219 (467)
Q Consensus 218 ~~ 219 (467)
+.
T Consensus 445 l~ 446 (636)
T 4eco_A 445 IS 446 (636)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.4e-24 Score=230.60 Aligned_cols=358 Identities=15% Similarity=0.111 Sum_probs=204.7
Q ss_pred CCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCC-CchhhhhcCcCCCE
Q 012249 36 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE-VLPSSVSDLTNLRS 114 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~ 114 (467)
.+++|++|++++|.+..... ...+++|+.|++++|.+...+|. ++.+++|++|++++|.+. .+|..++.+++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred cCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 33444444444444332211 13677777888887775544554 578888888888888877 56777888888888
Q ss_pred EEcCCCCCCCcCCCccccCCccEEEccCCcCc-cccccccCC-CCCcEEeccCCCCC-CcCCccccCCCCCcEEEcccCC
Q 012249 115 LSLGWCRRLKRVPSLARLLALQYLDLYDTRIE-EVPEGMEML-ENLSHLYLSSLQLK-KFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 115 L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~-~lp~~~~~l-~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
|++++|...+..|.. .+++|++|++++|.++ .+|..+... ++|++|++++|.+. .+|.. ++++++|++|++++|.
T Consensus 252 L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSE
T ss_pred EECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCc
Confidence 888887655555544 7788888888888777 677777664 88999999988875 44444 4888999999998887
Q ss_pred CcccccHHHHHhhhccCcEEEcccCCccc-hhhhhhccCCCCChhhhhhhhhcCCCccccccccccc--eeeeecCcccc
Q 012249 192 EALRETVEEAARLSDRLDYFEGYFSTLKD-FNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDK--SVFLYGCKICE 268 (467)
Q Consensus 192 ~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~--~~~L~~l~l~~ 268 (467)
..+..+...+..+ ++|+.|+++.+.... .+..+.... ..++.+...+..-....+..+.. ..+|+.+.+.+
T Consensus 330 l~~~ip~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~-----~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 330 FSGELPMDTLLKM-RGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp EEEECCHHHHTTC-TTCCEEECCSSEEEECCCTTHHHHT-----TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ccCcCCHHHHhcC-CCCCEEeCcCCccCccccHHHHhhh-----cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 7656665668888 889999988876542 111111100 01111111110000011222222 44566666666
Q ss_pred chhhhhhh------cccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhhcccee
Q 012249 269 IKETIVLL------KDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVL 342 (467)
Q Consensus 269 ~~~~~~~~------~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 342 (467)
+......| ..++.|.+.++.--..+ ......++. |++|++++|.....+ + ..+..+++|+.|
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---------p~~l~~l~~-L~~L~L~~n~l~~~~-p-~~~~~l~~L~~L 471 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTI---------PSSLGSLSK-LRDLKLWLNMLEGEI-P-QELMYVKTLETL 471 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCC---------CGGGGGCTT-CCEEECCSSCCCSCC-C-GGGGGCTTCCEE
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcc---------cHHHhcCCC-CCEEECCCCcccCcC-C-HHHcCCCCceEE
Confidence 55332222 34455555444211110 011233455 777777765433222 2 234566677777
Q ss_pred eeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCccccCCc
Q 012249 343 AVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLSLS 422 (467)
Q Consensus 343 ~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~ 422 (467)
++++|.-...++.. ...+++|+.|++.++.-...++... ..+++|++|++.+|.--..+|..
T Consensus 472 ~L~~N~l~~~~p~~----------------l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 472 ILDFNDLTGEIPSG----------------LSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp ECCSSCCCSCCCGG----------------GGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG
T ss_pred EecCCcccCcCCHH----------------HhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHH
Confidence 77765322222111 1156666666666665444444443 34666666666666444456655
Q ss_pred cCcccCCCCCCCCcceeeeeh
Q 012249 423 LPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 423 ~~~l~~~~~~~~~~L~~l~i~ 443 (467)
+..++ +|+.+++.
T Consensus 534 l~~l~--------~L~~L~Ls 546 (768)
T 3rgz_A 534 LGDCR--------SLIWLDLN 546 (768)
T ss_dssp GGGCT--------TCCEEECC
T ss_pred HcCCC--------CCCEEECC
Confidence 55544 56666555
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=5.3e-24 Score=220.59 Aligned_cols=194 Identities=19% Similarity=0.164 Sum_probs=129.4
Q ss_pred EEEcCCCcccC-CcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCc-hhHhhcCCCCcEEEccCC
Q 012249 20 MVKAGLRLLEF-PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIP-ECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 20 ~~~~~~~l~~~-~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 97 (467)
+..+++.+..+ |..+..+++|++|++++|.+..++...+.++++|+.|++++|.+ ..++ +.+ ..+++|++|++++|
T Consensus 86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPKG-FPTEKLKVLDFQNN 163 (606)
T ss_dssp EECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC-CCCCCCTT-CCCTTCCEEECCSS
T ss_pred eeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc-cccCcccc-cCCcccCEEEcccC
Confidence 45556666555 56788899999999999998877555566889999999999874 4432 222 35889999999999
Q ss_pred CCCCc-hhhhhcCcCCC--EEEcCCCCCCCcCCCccccC-----------------------------------------
Q 012249 98 DIEVL-PSSVSDLTNLR--SLSLGWCRRLKRVPSLARLL----------------------------------------- 133 (467)
Q Consensus 98 ~~~~l-~~~~~~l~~L~--~L~l~~~~~~~~~p~l~~l~----------------------------------------- 133 (467)
.+..+ +..++.+++|+ .|++++|......|......
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred cccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 88855 56678888888 78888765433332111100
Q ss_pred -----------CccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHH
Q 012249 134 -----------ALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEA 201 (467)
Q Consensus 134 -----------~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 201 (467)
+|+.|++++|.++.++.. ++++++|++|++++|.+..+|..+ +++++|++|++++|......+ ..+
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~~-~~~ 321 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQ-ISA 321 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC-CSCTTCCEEECTTCCCSBGGG-GCG
T ss_pred ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh-cccccCCEEECccCCcCcCch-hhh
Confidence 456666666666655543 666777777777777776666654 667777777777665443322 345
Q ss_pred HhhhccCcEEEcccCCc
Q 012249 202 ARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 202 ~~l~~~L~~L~l~~~~~ 218 (467)
+.+ ++|+.|+++.+..
T Consensus 322 ~~l-~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 322 SNF-PSLTHLSIKGNTK 337 (606)
T ss_dssp GGC-TTCSEEECCSCSS
T ss_pred hcc-CcCCEEECCCCCc
Confidence 666 6677777666543
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=4.7e-25 Score=234.23 Aligned_cols=356 Identities=17% Similarity=0.105 Sum_probs=177.3
Q ss_pred CCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCC-CchhhhhcCc-CCCEE
Q 012249 38 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE-VLPSSVSDLT-NLRSL 115 (467)
Q Consensus 38 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~-~L~~L 115 (467)
++|++|++++|.+.......+.++++|+.|++++|.+.+.+|...+..+++|++|++++|.+. .+|..+..++ +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 455555555555442222223345555555555554333445443455555555555555544 4444444443 45555
Q ss_pred EcCCCCCCCcCC-Cccc--cCCccEEEccCCcCc-cccccccCCCCCcEEeccCCCCC-CcCCccccCCCCCcEEEcccC
Q 012249 116 SLGWCRRLKRVP-SLAR--LLALQYLDLYDTRIE-EVPEGMEMLENLSHLYLSSLQLK-KFPAGILPRLRSLYKLKLSFG 190 (467)
Q Consensus 116 ~l~~~~~~~~~p-~l~~--l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 190 (467)
++++|...+..| .+.. +++|++|++++|.++ .+|..++++++|++|++++|.+. .+|.. ++++++|+.|++++|
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCC
Confidence 555443332333 2222 445555555555554 45555666666666666666654 33333 356666666666666
Q ss_pred CCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccch
Q 012249 191 NEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIK 270 (467)
Q Consensus 191 ~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 270 (467)
...+..+ ..+..+ ++|+.|+++.|...... +..+..++.++.+...+..-...++.++..+.+|+.|++.++.
T Consensus 453 ~l~~~~p-~~~~~l-~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 453 MLEGEIP-QELMYV-KTLETLILDFNDLTGEI-----PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCCSCCC-GGGGGC-TTCCEEECCSSCCCSCC-----CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccCcCC-HHHcCC-CCceEEEecCCcccCcC-----CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 5443332 345555 66666666665543210 1111112222222222211112334455566666666666655
Q ss_pred hhhhhh------cccceeeeeeccccccccccc-cc--------------------------------------------
Q 012249 271 ETIVLL------KDVQCLQMFEVDEVTSLNDVL-PR-------------------------------------------- 299 (467)
Q Consensus 271 ~~~~~~------~~l~~L~~~~~~~l~~l~~~~-~~-------------------------------------------- 299 (467)
.....| +.++.|.+.++.-...++... ..
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 332222 234444444432211111000 00
Q ss_pred ---------------ccc-cccccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhh
Q 012249 300 ---------------ELG-LVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEK 363 (467)
Q Consensus 300 ---------------~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 363 (467)
... ......++. |+.|+++++. ++...| ..+..++.|+.|+++++.-...++..
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~-L~~LdLs~N~-l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~------- 675 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGS-MMFLDMSYNM-LSGYIP-KEIGSMPYLFILNLGHNDISGSIPDE------- 675 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBC-CCEEECCSSC-CBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGG-------
T ss_pred ccccccccccccceecccCchhhhcccc-ccEEECcCCc-ccccCC-HHHhccccCCEEeCcCCccCCCCChH-------
Confidence 000 001223445 8888888754 333223 24577888888888875332233222
Q ss_pred hhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCccccCCc
Q 012249 364 ELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLSLS 422 (467)
Q Consensus 364 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~ 422 (467)
...+++|+.|+++++.-...++... ..+++|++|++++++--..+|.+
T Consensus 676 ---------l~~L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 676 ---------VGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ---------GGGCTTCCEEECCSSCCEECCCGGG--GGCCCCSEEECCSSEEEEECCSS
T ss_pred ---------HhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECcCCcccccCCCc
Confidence 1277888888888877555666555 46788888888887544457764
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=220.27 Aligned_cols=376 Identities=16% Similarity=0.153 Sum_probs=241.0
Q ss_pred ceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 18 LFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
..+..+++++..+|..+. +++++|++++|.+..++...+.++++|++|++++|. +..+++..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC
Confidence 356777888999998766 799999999999998876666789999999999998 55665555689999999999999
Q ss_pred CCCCchhhhhcCcCCCEEEcCCCCCCC-cCC-CccccCCccEEEccCCcCccccccccCCCCC--cEEeccCCCC--CC-
Q 012249 98 DIEVLPSSVSDLTNLRSLSLGWCRRLK-RVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENL--SHLYLSSLQL--KK- 170 (467)
Q Consensus 98 ~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~- 170 (467)
.+..+|.. .+++|++|++++|.... ..| .++.+++|++|++++|.++. ..+..+++| ++|++++|.+ ..
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccc
Confidence 99988876 89999999999986544 356 79999999999999998875 356677777 9999888876 21
Q ss_pred cCCc-------------------------cccCCCCCcEEEcccCC------------------------------Cccc
Q 012249 171 FPAG-------------------------ILPRLRSLYKLKLSFGN------------------------------EALR 195 (467)
Q Consensus 171 ~~~~-------------------------~l~~l~~L~~L~l~~~~------------------------------~~~~ 195 (467)
.|.. .+.++++|+.+++++|. ....
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 1211 12335566666665542 1110
Q ss_pred ccHHHH---HhhhccCcEEEcccCCcc-chhhhhhccCCCCChhhhhhhh-----------------------hcCCCcc
Q 012249 196 ETVEEA---ARLSDRLDYFEGYFSTLK-DFNIYVKSTDGRGSKNYCLALS-----------------------AHGMGGC 248 (467)
Q Consensus 196 ~~~~~l---~~l~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~l~~l~~l~-----------------------~~~~~~~ 248 (467)
. +..+ ... ++|+.|+++.+.+. ..+...... ....++.++.+. .+.....
T Consensus 236 ~-~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~-~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 236 S-FIRILQLVWH-TTVWYFSISNVKLQGQLDFRDFDY-SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp H-HHHHHHHHHT-SSCSEEEEEEEEEESCCCCCCCCC-CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred H-HHHHHHHhhh-CcccEEEeecccccCccccchhhc-ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 0 0111 112 36777777666543 111111000 001111111110 0000000
Q ss_pred cccccc-ccceeeeecCccccchhhhhhh------cccceeeeeecccccccccccccccccccccCccccccEEEEecC
Q 012249 249 LVTHLE-VDKSVFLYGCKICEIKETIVLL------KDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSC 321 (467)
Q Consensus 249 ~~~~~~-~~~~~~L~~l~l~~~~~~~~~~------~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 321 (467)
...... ...+.+|+.++++++......+ +.++.|.+.++.- +.+..+ ......++. |++|+++++
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~------~~~~~~l~~-L~~L~Ls~N 384 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKI------AEMTTQMKS-LQQLDISQN 384 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC-CBHHHH------HHHHTTCTT-CCEEECCSS
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc-Cccccc------hHHHhhCCC-CCEEECCCC
Confidence 000001 1466788888888876443333 2455555554421 111100 011345677 999999986
Q ss_pred CCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccc-cccccccccccccccccccCCCcc
Q 012249 322 KNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTL-PRLKKLRFYDLPEFKSFCSYNGVL 400 (467)
Q Consensus 322 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~ 400 (467)
.....+ +...+..+++|+.|++++|. +...... .+ ++|+.|++.++ .++.++... .
T Consensus 385 ~l~~~l-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~------------------~l~~~L~~L~Ls~N-~l~~ip~~~--~ 441 (520)
T 2z7x_B 385 SVSYDE-KKGDCSWTKSLLSLNMSSNI-LTDTIFR------------------CLPPRIKVLDLHSN-KIKSIPKQV--V 441 (520)
T ss_dssp CCBCCG-GGCSCCCCTTCCEEECCSSC-CCGGGGG------------------SCCTTCCEEECCSS-CCCCCCGGG--G
T ss_pred cCCccc-ccchhccCccCCEEECcCCC-CCcchhh------------------hhcccCCEEECCCC-cccccchhh--h
Confidence 543324 33345677899999999864 3322111 23 79999999997 466776655 4
Q ss_pred ccCCcceEEEeCCCCccccCCc-cCcccCCCCCCCCcceeeeeh
Q 012249 401 VCNSLQEIEVRRCPKLKRLSLS-LPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 401 ~~~~L~~L~i~~C~~L~~lp~~-~~~l~~~~~~~~~~L~~l~i~ 443 (467)
.+++|++|++.+| +++.+|.. +..+. +|+.+++.
T Consensus 442 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~--------~L~~L~l~ 476 (520)
T 2z7x_B 442 KLEALQELNVASN-QLKSVPDGIFDRLT--------SLQKIWLH 476 (520)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTTTTTCT--------TCCEEECC
T ss_pred cCCCCCEEECCCC-cCCccCHHHhccCC--------cccEEECc
Confidence 7999999999998 78889876 54444 89999887
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.7e-23 Score=208.17 Aligned_cols=179 Identities=21% Similarity=0.302 Sum_probs=88.6
Q ss_pred CCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch
Q 012249 24 GLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP 103 (467)
Q Consensus 24 ~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 103 (467)
+..+..+|. +..+++|++|++++|.+..++. +.++++|+.|++++|. +..++. +..+++|++|++++|.+..++
T Consensus 55 ~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 55 RLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp SSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCCh
Confidence 334444442 4445555555555555554443 2355555555555554 333333 345555555555555555544
Q ss_pred hhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCc
Q 012249 104 SSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLY 183 (467)
Q Consensus 104 ~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 183 (467)
. +..+++|++|++++| .+..++.++.+++|++|++++ .+..++ .+.++++|++|++++|.+..++. +.++++|+
T Consensus 129 ~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 202 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDISV--LAKLTNLE 202 (466)
T ss_dssp G-GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred H-HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCChh--hccCCCCC
Confidence 3 555555555555554 233334445555555555532 222222 25555555556655555554433 34555566
Q ss_pred EEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 184 KLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 184 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
.|++++|......+ ++.+ ++|+.|+++.+..
T Consensus 203 ~L~l~~n~l~~~~~---~~~l-~~L~~L~l~~n~l 233 (466)
T 1o6v_A 203 SLIATNNQISDITP---LGIL-TNLDELSLNGNQL 233 (466)
T ss_dssp EEECCSSCCCCCGG---GGGC-TTCCEEECCSSCC
T ss_pred EEEecCCccccccc---cccc-CCCCEEECCCCCc
Confidence 66655554433221 4444 5555555555544
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.4e-23 Score=209.65 Aligned_cols=354 Identities=16% Similarity=0.118 Sum_probs=236.9
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...+.++..+|. + .+++++|++++|.+..++...+.++++|+.|++++|.....++...|..+++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45666778888887 3 36899999999999987666677999999999999986557776667999999999999999
Q ss_pred CCCc-hhhhhcCcCCCEEEcCCCCCCCcCC-C--ccccCCccEEEccCCcCccc-ccc-ccCCCCCcEEeccCCCCCCcC
Q 012249 99 IEVL-PSSVSDLTNLRSLSLGWCRRLKRVP-S--LARLLALQYLDLYDTRIEEV-PEG-MEMLENLSHLYLSSLQLKKFP 172 (467)
Q Consensus 99 ~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p-~--l~~l~~L~~L~l~~~~~~~l-p~~-~~~l~~L~~L~l~~~~~~~~~ 172 (467)
+..+ |..++++++|++|++++|...+..+ . +..+++|++|++++|.++.+ |.. +.++++|++|++++|.+..++
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 9965 7789999999999999985444344 3 88999999999999999876 544 889999999999999987665
Q ss_pred CccccCC--CCCcEEEcccCCCcccccH-------HHHHhhhccCcEEEcccCCccchh-hhhhccCCCCChhhhhhhhh
Q 012249 173 AGILPRL--RSLYKLKLSFGNEALRETV-------EEAARLSDRLDYFEGYFSTLKDFN-IYVKSTDGRGSKNYCLALSA 242 (467)
Q Consensus 173 ~~~l~~l--~~L~~L~l~~~~~~~~~~~-------~~l~~l~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~l~~l~~ 242 (467)
...+..+ .+|+.|+++++........ ..+..+ ++|+.|+++++.+.... ..........
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~---------- 239 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGT---------- 239 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTC----------
T ss_pred hhhhhccccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhcccccc----------
Confidence 5444544 6788888887755432211 012344 67888888888764321 1111000000
Q ss_pred cCCCccccccccccceeeeecCccccch------------------hhhhhhcccceeeeeecccccccccccccccccc
Q 012249 243 HGMGGCLVTHLEVDKSVFLYGCKICEIK------------------ETIVLLKDVQCLQMFEVDEVTSLNDVLPRELGLV 304 (467)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~------------------~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~ 304 (467)
+|+.+.+..+. +.......++.|.+.++.--... ..
T Consensus 240 -----------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---------~~ 293 (455)
T 3v47_A 240 -----------------KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL---------KS 293 (455)
T ss_dssp -----------------CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC---------TT
T ss_pred -----------------ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc---------hh
Confidence 11222211110 01111235566655554321110 11
Q ss_pred cccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccc
Q 012249 305 NIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRF 384 (467)
Q Consensus 305 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 384 (467)
....++. |++|+++++. ++.+ +...+..+++|+.|++++| .+.++.... ...+++|++|++
T Consensus 294 ~~~~l~~-L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~---------------~~~l~~L~~L~L 354 (455)
T 3v47_A 294 VFSHFTD-LEQLTLAQNE-INKI-DDNAFWGLTHLLKLNLSQN-FLGSIDSRM---------------FENLDKLEVLDL 354 (455)
T ss_dssp TTTTCTT-CCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCEECGGG---------------GTTCTTCCEEEC
T ss_pred hcccCCC-CCEEECCCCc-cccc-ChhHhcCcccCCEEECCCC-ccCCcChhH---------------hcCcccCCEEEC
Confidence 1234566 9999998864 4443 2234567888999999886 444442111 126888999999
Q ss_pred ccccccccc-ccCCCccccCCcceEEEeCCCCccccCCc-cCcccCCCCCCCCcceeeeeh
Q 012249 385 YDLPEFKSF-CSYNGVLVCNSLQEIEVRRCPKLKRLSLS-LPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 385 ~~~~~l~~~-~~~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~~l~~~~~~~~~~L~~l~i~ 443 (467)
.++. ++.+ +... ..+++|++|++.++ +++++|.+ +..+ ++|+.+++.
T Consensus 355 s~N~-l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l--------~~L~~L~l~ 403 (455)
T 3v47_A 355 SYNH-IRALGDQSF--LGLPNLKELALDTN-QLKSVPDGIFDRL--------TSLQKIWLH 403 (455)
T ss_dssp CSSC-CCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTC--------TTCCEEECC
T ss_pred CCCc-ccccChhhc--cccccccEEECCCC-ccccCCHhHhccC--------CcccEEEcc
Confidence 8875 4444 3333 45888999999887 67777654 3344 388888877
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=215.02 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=112.3
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..++. .+..+++|++|++++|.+..++...+.++++|++|++++|. +..+++..|..+++|++|++++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccc
Confidence 35556667766654 67888899999999998888877777789999999999997 66666556688999999999999
Q ss_pred CCCCchh-hhhcCcCCCEEEcCCCCCCC-cCC-CccccCCccEEEccCCcCcccc-ccccCCCCC----cEEeccCCCC
Q 012249 98 DIEVLPS-SVSDLTNLRSLSLGWCRRLK-RVP-SLARLLALQYLDLYDTRIEEVP-EGMEMLENL----SHLYLSSLQL 168 (467)
Q Consensus 98 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~p-~l~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L----~~L~l~~~~~ 168 (467)
.+..++. .++++++|++|++++|.... .+| .++++++|++|++++|.++.++ ..++.+++| ..+++++|.+
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 8887764 57888999999999875443 356 6888889999999888777553 345555555 5555555544
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.2e-23 Score=199.56 Aligned_cols=185 Identities=23% Similarity=0.357 Sum_probs=141.2
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...+..+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+
T Consensus 49 L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~l~~n~i 122 (347)
T 4fmz_A 49 LVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNEDNI 122 (347)
T ss_dssp EECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECTTSCC
T ss_pred EEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCc-ccCchH--HcCCCcCCEEECcCCcc
Confidence 4555666666654 6778888888888888877665 4578888888888886 555553 57888888888888888
Q ss_pred CCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCC
Q 012249 100 EVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRL 179 (467)
Q Consensus 100 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 179 (467)
..++. +..+++|++|++++|......+.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+
T Consensus 123 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l 198 (347)
T 4fmz_A 123 SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASL 198 (347)
T ss_dssp CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGC
T ss_pred cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCC
Confidence 87765 778888888888888777776678888888888888888777654 7788888888888888877766 4788
Q ss_pred CCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 180 RSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
++|+.|++++|....... +..+ ++|+.|+++++..
T Consensus 199 ~~L~~L~l~~n~l~~~~~---~~~~-~~L~~L~l~~n~l 233 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP---VANM-TRLNSLKIGNNKI 233 (347)
T ss_dssp TTCCEEECCSSCCCCCGG---GGGC-TTCCEEECCSSCC
T ss_pred CccceeecccCCCCCCch---hhcC-CcCCEEEccCCcc
Confidence 888888888876544332 6677 8888888877755
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4e-24 Score=222.12 Aligned_cols=316 Identities=14% Similarity=0.159 Sum_probs=201.0
Q ss_pred CchhHhhcCCCCcEEEccCCCCCC------------------chhhhh--cCcCCCEEEcCCCCCCCcCC-CccccCCcc
Q 012249 78 IPECFFVHMHGLKVVNLSSTDIEV------------------LPSSVS--DLTNLRSLSLGWCRRLKRVP-SLARLLALQ 136 (467)
Q Consensus 78 ~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~ 136 (467)
+|.. ++++++|++|++++|.+.. +|..++ ++++|++|++++|...+.+| .++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 5554 4889999999999999887 898888 99999999999988788888 799999999
Q ss_pred EEEccCCc-Ccc--ccccccCC------CCCcEEeccCCCCCCcCC--ccccCCCCCcEEEcccCCCcccccHHHHHhhh
Q 012249 137 YLDLYDTR-IEE--VPEGMEML------ENLSHLYLSSLQLKKFPA--GILPRLRSLYKLKLSFGNEALRETVEEAARLS 205 (467)
Q Consensus 137 ~L~l~~~~-~~~--lp~~~~~l------~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 205 (467)
+|++++|. ++. +|..++.+ ++|++|++++|.+..+|. .+ +++++|+.|++++|...+..+ .++.+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip--~~~~l- 352 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP--AFGSE- 352 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECC--CCEEE-
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchh--hhCCC-
Confidence 99999997 884 88877776 899999999999988887 54 899999999999987764554 67788
Q ss_pred ccCcEEEcccCCccchhhhhhccCCCCChhh-hhhhhhcCCCcccccccccccee--eeecCccccchhhhhhhc-----
Q 012249 206 DRLDYFEGYFSTLKDFNIYVKSTDGRGSKNY-CLALSAHGMGGCLVTHLEVDKSV--FLYGCKICEIKETIVLLK----- 277 (467)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~----- 277 (467)
++|+.|+++.+.+...+.. +..+.. ++.+...+..- ..++..+.... +|+.++++++......|.
T Consensus 353 ~~L~~L~L~~N~l~~lp~~------l~~l~~~L~~L~Ls~N~l-~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPAN------FCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EEESEEECCSSEEEECCTT------SEEECTTCCEEECCSSCC-SSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCCEEECCCCccccccHh------hhhhcccCcEEEccCCcC-cccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 8999999988876533221 222222 22222111111 12233333322 677777776664433332
Q ss_pred --------ccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchH-------Hhhhcccee
Q 012249 278 --------DVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLL-------PALQNLKVL 342 (467)
Q Consensus 278 --------~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-------~~l~~L~~L 342 (467)
.++.|.+.++.- +.+. . .....++. |++|+++++. ++.++. ..+ +++++|+.|
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l-~~lp---~-----~~~~~l~~-L~~L~Ls~N~-l~~i~~-~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQI-SKFP---K-----ELFSTGSP-LSSINLMGNM-LTEIPK-NSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCC-CSCC---T-----HHHHTTCC-CSEEECCSSC-CSBCCS-SSSEETTEECTTGGGCCEE
T ss_pred ccccccCCCCCEEECcCCcc-CcCC---H-----HHHccCCC-CCEEECCCCC-CCCcCH-HHhccccccccccCCccEE
Confidence 233333333211 1100 0 00112455 7777777643 334322 111 223367777
Q ss_pred eeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCC------CCc
Q 012249 343 AVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRC------PKL 416 (467)
Q Consensus 343 ~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C------~~L 416 (467)
++++| .+..++.... ...+++|+.|++.++. ++.++... ..+++|++|.++++ .-.
T Consensus 494 ~Ls~N-~l~~lp~~~~--------------~~~l~~L~~L~Ls~N~-l~~ip~~~--~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 494 DLRFN-KLTKLSDDFR--------------ATTLPYLVGIDLSYNS-FSKFPTQP--LNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp ECCSS-CCCBCCGGGS--------------TTTCTTCCEEECCSSC-CSSCCCGG--GGCSSCCEEECCSCBCTTCCBCC
T ss_pred ECcCC-cCCccChhhh--------------hccCCCcCEEECCCCC-CCCcChhh--hcCCCCCEEECCCCcccccCccc
Confidence 77764 3443321110 0167888888888764 44455544 45788888888543 234
Q ss_pred cccCCccCcccCCCCCCCCcceeeeeh
Q 012249 417 KRLSLSLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 417 ~~lp~~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
..+|.++..++ +|+.+++.
T Consensus 556 ~~~p~~l~~l~--------~L~~L~Ls 574 (636)
T 4eco_A 556 REWPEGITLCP--------SLTQLQIG 574 (636)
T ss_dssp CCCCTTGGGCS--------SCCEEECC
T ss_pred ccChHHHhcCC--------CCCEEECC
Confidence 45777665555 88888887
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.5e-24 Score=224.44 Aligned_cols=316 Identities=13% Similarity=0.120 Sum_probs=181.3
Q ss_pred CchhHhhcCCCCcEEEccCCCCCC------------------chhhhh--cCcCCCEEEcCCCCCCCcCC-CccccCCcc
Q 012249 78 IPECFFVHMHGLKVVNLSSTDIEV------------------LPSSVS--DLTNLRSLSLGWCRRLKRVP-SLARLLALQ 136 (467)
Q Consensus 78 ~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~ 136 (467)
+|.. ++++++|++|++++|.+.. +|..++ ++++|++|++++|...+.+| .++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 4544 3677777777777777776 777766 77777777777776666777 577777777
Q ss_pred EEEccCCc-Ccc--ccccccCCC-------CCcEEeccCCCCCCcCC--ccccCCCCCcEEEcccCCCcccccHHHHHhh
Q 012249 137 YLDLYDTR-IEE--VPEGMEMLE-------NLSHLYLSSLQLKKFPA--GILPRLRSLYKLKLSFGNEALRETVEEAARL 204 (467)
Q Consensus 137 ~L~l~~~~-~~~--lp~~~~~l~-------~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 204 (467)
+|++++|. ++. +|..+++++ +|++|++++|.+..+|. .+ +++++|+.|++++|... ..+ .++.+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp--~~~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVR-HLE--AFGTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCC-BCC--CCCTT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCcc-cch--hhcCC
Confidence 77777775 664 666555444 77777777777777776 44 77777777777777654 332 56667
Q ss_pred hccCcEEEcccCCccchhhhhhccCCCCChhh-hhhhhhcCCCcccccccccccee--eeecCccccchhhhhhh-----
Q 012249 205 SDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNY-CLALSAHGMGGCLVTHLEVDKSV--FLYGCKICEIKETIVLL----- 276 (467)
Q Consensus 205 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~----- 276 (467)
++|+.|+++.|.+...+. .+..+.. ++.|...+..- ..++..+.... +|+.|+++++.....++
T Consensus 595 -~~L~~L~Ls~N~l~~lp~------~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 595 -VKLTDLKLDYNQIEEIPE------DFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -SEESEEECCSSCCSCCCT------TSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -CcceEEECcCCccccchH------HHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 777777777776543221 1222222 22221111110 12222233322 37777777665433222
Q ss_pred ------cccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccch------HHhhhccceeee
Q 012249 277 ------KDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRL------LPALQNLKVLAV 344 (467)
Q Consensus 277 ------~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~------~~~l~~L~~L~l 344 (467)
..++.|.+.++.- +.+. . .....++. |+.|+++++ .++.++.... ++++++|+.|++
T Consensus 667 l~~~~~~~L~~L~Ls~N~L-~~lp---~-----~~~~~l~~-L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEI-QKFP---T-----ELFATGSP-ISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TTTCCCCCEEEEECCSSCC-CSCC---H-----HHHHTTCC-CSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred hccccCCCcCEEEccCCcC-CccC---H-----HHHccCCC-CCEEECCCC-cCCccChHHhccccccccccCCccEEEC
Confidence 1344444443321 1110 0 00112455 777777775 3334322110 224457777777
Q ss_pred CCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCC------Cccc
Q 012249 345 ISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCP------KLKR 418 (467)
Q Consensus 345 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~------~L~~ 418 (467)
++| .+..++.... ...+++|+.|++.++. +..++... ..+++|+.|.+.+++ -...
T Consensus 736 s~N-~L~~lp~~l~--------------~~~l~~L~~L~Ls~N~-L~~lp~~l--~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 736 RFN-KLTSLSDDFR--------------ATTLPYLSNMDVSYNC-FSSFPTQP--LNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CSS-CCCCCCGGGS--------------TTTCTTCCEEECCSSC-CSSCCCGG--GGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred CCC-CCccchHHhh--------------hccCCCcCEEEeCCCC-CCccchhh--hcCCCCCEEECCCCCCccccccccc
Confidence 775 4444321110 0167888888888864 44455444 468888888887633 2345
Q ss_pred cCCccCcccCCCCCCCCcceeeeeh
Q 012249 419 LSLSLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 419 lp~~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
+|..+..+. +|+.|++.
T Consensus 798 ip~~l~~L~--------~L~~L~Ls 814 (876)
T 4ecn_A 798 WPTGITTCP--------SLIQLQIG 814 (876)
T ss_dssp CCTTGGGCS--------SCCEEECC
T ss_pred ChHHHhcCC--------CCCEEECC
Confidence 677665555 88888887
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.9e-23 Score=213.80 Aligned_cols=196 Identities=21% Similarity=0.249 Sum_probs=160.1
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
....++++.++|..+. +++++|++++|.++.++...+.++++|++|++++|. +..+++..|..+++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCcc
Confidence 4556778899998664 699999999999998776667799999999999998 5666655678999999999999999
Q ss_pred CCchh-hhhcCcCCCEEEcCCCCCCC-cCC-CccccCCccEEEccCCc-Ccccc-ccccCCCCCcEEeccCCCCCCcCCc
Q 012249 100 EVLPS-SVSDLTNLRSLSLGWCRRLK-RVP-SLARLLALQYLDLYDTR-IEEVP-EGMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 100 ~~l~~-~~~~l~~L~~L~l~~~~~~~-~~p-~l~~l~~L~~L~l~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
..++. .++.+++|++|++++|.... ..| .++++++|++|++++|. +..+| ..++++++|++|++++|.+......
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 97765 48999999999999985433 344 68999999999999996 77776 4699999999999999999765444
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
.++++++|++|+++.+..... +...+..+ ++|+.|+++.+....
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l-~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFL-LEIFADIL-SSVRYLELRDTNLAR 210 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTH-HHHHHHST-TTBSEEEEESCBCTT
T ss_pred hhhccccCceEecccCccccc-chhhHhhc-ccccEEEccCCcccc
Confidence 458999999999998865332 22234567 999999999887644
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=9.8e-23 Score=213.98 Aligned_cols=192 Identities=21% Similarity=0.206 Sum_probs=152.2
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
++..++.++..+|..+. +++++|++++|.+..++...+.++++|+.|++++|. +..+++..|+++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCc
Confidence 46667788889998664 689999999999998888777789999999999998 555555567899999999999999
Q ss_pred CCCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccc-cccccCCCCCcEEeccCCCCCCcCCc
Q 012249 99 IEVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEV-PEGMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 99 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
+..+|. .++.+++|++|++++|. +..++ .++++++|++|++++|.++.. |..++++++|++|++++|.+..++..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 998876 58999999999999975 45554 689999999999999988865 45688999999999999998877764
Q ss_pred cc--cCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccC
Q 012249 175 IL--PRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFS 216 (467)
Q Consensus 175 ~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 216 (467)
.+ ..+++|+.|++++|......+ ..+..+ .+|+.+.+..+
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l-~~L~~L~l~~~ 205 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSP-GCFHAI-GRLFGLFLNNV 205 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCT-TGGGGS-SEECEEECTTC
T ss_pred HhhccccccccEEECCCCcccccCh-hhhhhh-hhhhhhhcccc
Confidence 32 356899999999886544322 344444 55555544443
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=8.5e-23 Score=214.44 Aligned_cols=171 Identities=23% Similarity=0.264 Sum_probs=138.4
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..++. .+..+++|++|++++|.+..++...+.++++|+.|++++|. +..+|...|+.+++|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCC
Confidence 45666777888876 58889999999999999998777777789999999999997 67788766789999999999999
Q ss_pred CCCCch-hhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccccc-c--cCCCCCcEEeccCCCCCCcC
Q 012249 98 DIEVLP-SSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEG-M--EMLENLSHLYLSSLQLKKFP 172 (467)
Q Consensus 98 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~-~--~~l~~L~~L~l~~~~~~~~~ 172 (467)
.+..++ ..++++++|++|++++|......| .++++++|++|++++|.++.++.. + ..+++|++|++++|.+..++
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 999775 678999999999999986555555 688999999999999988877643 3 35689999999999887776
Q ss_pred CccccCCCCCcEEEcccC
Q 012249 173 AGILPRLRSLYKLKLSFG 190 (467)
Q Consensus 173 ~~~l~~l~~L~~L~l~~~ 190 (467)
...++.+.+|+.|++..+
T Consensus 188 ~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 188 PGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp TTGGGGSSEECEEECTTC
T ss_pred hhhhhhhhhhhhhhcccc
Confidence 655565555555544443
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=209.10 Aligned_cols=195 Identities=20% Similarity=0.249 Sum_probs=158.1
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...+.++..+|..+. ++++.|++++|.+..++...+.++++|+.|++++|. +..+++..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc
Confidence 45666778888887654 589999999999998877677789999999999997 555544556899999999999999
Q ss_pred CCCchh-hhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccc-ccccCCCCCcEEeccCCCCCCcCCcc
Q 012249 99 IEVLPS-SVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVP-EGMEMLENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 99 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~ 175 (467)
+..+|. .+..+++|++|++++|......+ .+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++...
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 998875 46789999999999976555555 6889999999999999888664 46889999999999999998888776
Q ss_pred ccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 176 LPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 176 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
+.++++|+.|++++|....... ..+..+ ++|+.|+++.+..
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~-~~~~~l-~~L~~L~l~~~~~ 212 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRD-YSFKRL-YRLKVLEISHWPY 212 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECT-TCSCSC-TTCCEEEEECCTT
T ss_pred hcccCCCcEEeCCCCcCcEeCh-hhcccC-cccceeeCCCCcc
Confidence 7899999999999886654432 457777 8899999877653
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.9e-23 Score=201.55 Aligned_cols=300 Identities=16% Similarity=0.207 Sum_probs=185.1
Q ss_pred CCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCCCEE
Q 012249 37 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRSL 115 (467)
Q Consensus 37 l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L 115 (467)
+++++.+++.++.+..+|..++..+++|+.|++++|. +..++...|..+++|++|++++|.+..++ ..++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4567777777777766666655566777777777776 44555444566777777777777766553 445667777777
Q ss_pred EcCCCCCCCcCC-C-ccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCC
Q 012249 116 SLGWCRRLKRVP-S-LARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNE 192 (467)
Q Consensus 116 ~l~~~~~~~~~p-~-l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 192 (467)
++++| .+..+| . +..+++|++|++++|.++.++. .+..+++|++|++++|.+..++ ++.+++|+.|++++|..
T Consensus 123 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 77775 344555 2 4667777777777776665543 3666777777777777666554 25566677777766644
Q ss_pred cccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccchhh
Q 012249 193 ALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKET 272 (467)
Q Consensus 193 ~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 272 (467)
... ... ..|+.|+++.+....... ....+|+.+.+.++...
T Consensus 199 ~~~------~~~-~~L~~L~l~~n~l~~~~~--------------------------------~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 199 STL------AIP-IAVEELDASHNSINVVRG--------------------------------PVNVELTILKLQHNNLT 239 (390)
T ss_dssp SEE------ECC-SSCSEEECCSSCCCEEEC--------------------------------CCCSSCCEEECCSSCCC
T ss_pred ccc------CCC-CcceEEECCCCeeeeccc--------------------------------cccccccEEECCCCCCc
Confidence 322 122 566666666655422110 00012333333333211
Q ss_pred hhhhcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhh
Q 012249 273 IVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEE 352 (467)
Q Consensus 273 ~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 352 (467)
. ......++. |++|+++++. ++... ...+..+++|+.|+++++ .+..
T Consensus 240 -------------------~----------~~~l~~l~~-L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~ 286 (390)
T 3o6n_A 240 -------------------D----------TAWLLNYPG-LVEVDLSYNE-LEKIM-YHPFVKMQRLERLYISNN-RLVA 286 (390)
T ss_dssp -------------------C----------CGGGGGCTT-CSEEECCSSC-CCEEE-SGGGTTCSSCCEEECCSS-CCCE
T ss_pred -------------------c----------cHHHcCCCC-ccEEECCCCc-CCCcC-hhHccccccCCEEECCCC-cCcc
Confidence 1 111234567 9999999864 44432 234577889999999985 5555
Q ss_pred hhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCccccCCccCcccCCCCC
Q 012249 353 IVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLSLSLPLLDHGQPS 432 (467)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~~~~~ 432 (467)
+..... .+|+|+.|++.++ .+..++... ..+++|++|.+.+|+ ++.+|. .
T Consensus 287 ~~~~~~----------------~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~N~-i~~~~~----------~ 336 (390)
T 3o6n_A 287 LNLYGQ----------------PIPTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHNS-IVTLKL----------S 336 (390)
T ss_dssp EECSSS----------------CCTTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSSC-CCCCCC----------C
T ss_pred cCcccC----------------CCCCCCEEECCCC-cceecCccc--cccCcCCEEECCCCc-cceeCc----------h
Confidence 432221 6899999999987 455665544 468899999999884 666652 2
Q ss_pred CCCcceeeeeh
Q 012249 433 PPAALKVIKIE 443 (467)
Q Consensus 433 ~~~~L~~l~i~ 443 (467)
.+++|+.+++.
T Consensus 337 ~~~~L~~L~l~ 347 (390)
T 3o6n_A 337 THHTLKNLTLS 347 (390)
T ss_dssp TTCCCSEEECC
T ss_pred hhccCCEEEcC
Confidence 34588888887
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=6.7e-23 Score=219.88 Aligned_cols=151 Identities=25% Similarity=0.267 Sum_probs=127.4
Q ss_pred ceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 18 LFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
......+.++..+|. ..+++++|++++|.++.+....+.++++|+.|++++|.....+++..|.++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 466777888999997 45689999999999998776677799999999999997677776666799999999999999
Q ss_pred CCCCc-hhhhhcCcCCCEEEcCCCCCCCcCC-C--ccccCCccEEEccCCcCcccc--ccccCCCCCcEEeccCCCCCCc
Q 012249 98 DIEVL-PSSVSDLTNLRSLSLGWCRRLKRVP-S--LARLLALQYLDLYDTRIEEVP--EGMEMLENLSHLYLSSLQLKKF 171 (467)
Q Consensus 98 ~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p-~--l~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~ 171 (467)
.+..+ |..++.+++|++|++++|......| . ++++++|++|++++|.++.++ ..++++++|++|++++|.+..+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 99965 7889999999999999986555455 3 889999999999999888653 4689999999999999887543
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=6e-23 Score=210.14 Aligned_cols=374 Identities=18% Similarity=0.175 Sum_probs=238.7
Q ss_pred eEEEcCCCcccCC-cCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFP-GEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~-~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..++ ..+..+++|++|++++|.+..++...+.++++|++|++++|. +..++...++.+++|++|++++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC
Confidence 4566677777764 578899999999999999998887767799999999999998 66777776799999999999999
Q ss_pred CCCC--chhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcc-ccccccCCCCCcEEeccCCCCCCcC
Q 012249 98 DIEV--LPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEE-VPEGMEMLENLSHLYLSSLQLKKFP 172 (467)
Q Consensus 98 ~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~ 172 (467)
.+.. .|..++.+++|++|++++|...+.+| .+..+++|++|++++|.++. .|..++.+++|++|+++.+.+..++
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence 9984 46778999999999999987677776 68999999999999998875 5666776666666666665555444
Q ss_pred CccccCCCCCcEEEcccCCCccc--------------------------ccHHHH----HhhhccCcEEEcccCCccchh
Q 012249 173 AGILPRLRSLYKLKLSFGNEALR--------------------------ETVEEA----ARLSDRLDYFEGYFSTLKDFN 222 (467)
Q Consensus 173 ~~~l~~l~~L~~L~l~~~~~~~~--------------------------~~~~~l----~~l~~~L~~L~l~~~~~~~~~ 222 (467)
..+++.+++|+.|++++|...+. .....+ ..+ ..|+.++++.+......
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~-~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI-LELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC-TTCCEEEEESCEEECCS
T ss_pred hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh-ccccccccccccccccc
Confidence 44334455555555555433221 001111 122 33444444333221100
Q ss_pred hh---------------------------------------hhc-------cCCCCCh-----hhhhhhhhcCCCcccc-
Q 012249 223 IY---------------------------------------VKS-------TDGRGSK-----NYCLALSAHGMGGCLV- 250 (467)
Q Consensus 223 ~~---------------------------------------~~~-------~~~~~~l-----~~l~~l~~~~~~~~~~- 250 (467)
.. ... ...+..+ ..+..+..+.......
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence 00 000 0000000 1122222222221111
Q ss_pred --c---cccccceeeeecCccccchhh--------hhhhcccceeeeeecccccccccccccccccccccCccccccEEE
Q 012249 251 --T---HLEVDKSVFLYGCKICEIKET--------IVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLR 317 (467)
Q Consensus 251 --~---~~~~~~~~~L~~l~l~~~~~~--------~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 317 (467)
. ...+..+++|+.|+++++... ......++.|.+.++ .++.+. . ....++. |++|+
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp---~------~~~~~~~-L~~L~ 416 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMP---D------SCQWPEK-MRFLN 416 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCC---S------CCCCCTT-CCEEE
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCC---h------hhccccc-ccEEE
Confidence 1 112456678888888887632 122345667766665 222211 0 1223456 99999
Q ss_pred EecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCC
Q 012249 318 FDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYN 397 (467)
Q Consensus 318 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 397 (467)
++++. ++.++.. ..++|+.|++++| .+..++ ..+++|++|++.++ .++.++..
T Consensus 417 Ls~N~-l~~l~~~----~~~~L~~L~Ls~N-~l~~~~-------------------~~l~~L~~L~Ls~N-~l~~ip~~- 469 (549)
T 2z81_A 417 LSSTG-IRVVKTC----IPQTLEVLDVSNN-NLDSFS-------------------LFLPRLQELYISRN-KLKTLPDA- 469 (549)
T ss_dssp CTTSC-CSCCCTT----SCTTCSEEECCSS-CCSCCC-------------------CCCTTCCEEECCSS-CCSSCCCG-
T ss_pred CCCCC-cccccch----hcCCceEEECCCC-Chhhhc-------------------ccCChhcEEECCCC-ccCcCCCc-
Confidence 99865 4443221 1258899999986 454431 17899999999997 46666653
Q ss_pred CccccCCcceEEEeCCCCccccCC-ccCcccCCCCCCCCcceeeeeh
Q 012249 398 GVLVCNSLQEIEVRRCPKLKRLSL-SLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 398 ~~~~~~~L~~L~i~~C~~L~~lp~-~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
..+++|++|++++| +++.+|. .+..++ +|+.+++.
T Consensus 470 --~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~--------~L~~L~l~ 505 (549)
T 2z81_A 470 --SLFPVLLVMKISRN-QLKSVPDGIFDRLT--------SLQKIWLH 505 (549)
T ss_dssp --GGCTTCCEEECCSS-CCCCCCTTGGGGCT--------TCCEEECC
T ss_pred --ccCccCCEEecCCC-ccCCcCHHHHhcCc--------ccCEEEec
Confidence 35899999999998 6777654 465555 88998886
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.6e-22 Score=207.42 Aligned_cols=379 Identities=17% Similarity=0.158 Sum_probs=238.4
Q ss_pred ceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 18 LFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
..+..+++++..+|..+. +++++|++++|.+..++...+.++++|+.|++++|. +..+++..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC
Confidence 456777888999998664 689999999999998887667789999999999997 56665555689999999999999
Q ss_pred CCCCchhhhhcCcCCCEEEcCCCCCCC-cCC-CccccCCccEEEccCCcCccccccccCCCCC--cEEeccCCCC--CCc
Q 012249 98 DIEVLPSSVSDLTNLRSLSLGWCRRLK-RVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENL--SHLYLSSLQL--KKF 171 (467)
Q Consensus 98 ~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~ 171 (467)
.+..+|.. .+++|++|++++|.... ..| .++++++|++|++++|.++.. .+..+++| ++|++++|.+ ...
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccccccccc
Confidence 99988876 89999999999975433 234 689999999999999987752 35555555 9999988876 332
Q ss_pred CCcc--------------------------ccCCCCCcEEEcccCCCccc---ccHHHHHhh------------------
Q 012249 172 PAGI--------------------------LPRLRSLYKLKLSFGNEALR---ETVEEAARL------------------ 204 (467)
Q Consensus 172 ~~~~--------------------------l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l------------------ 204 (467)
.... +.++++|+.++++.|..... ..+..+..+
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 2211 22455667777666521000 000111111
Q ss_pred --------hccCcEEEcccCCcc-chhhhhhc--cCCCC------------Ch--hhhhh------hhhcCCCccccccc
Q 012249 205 --------SDRLDYFEGYFSTLK-DFNIYVKS--TDGRG------------SK--NYCLA------LSAHGMGGCLVTHL 253 (467)
Q Consensus 205 --------~~~L~~L~l~~~~~~-~~~~~~~~--~~~~~------------~l--~~l~~------l~~~~~~~~~~~~~ 253 (467)
..+|+.|+++.+.+. ..+..... ...+. .+ ..... +..+..........
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 036777777666543 11111100 00000 00 00000 11011101100111
Q ss_pred cc-cceeeeecCccccchhhhhhh------cccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCcc
Q 012249 254 EV-DKSVFLYGCKICEIKETIVLL------KDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKN 326 (467)
Q Consensus 254 ~~-~~~~~L~~l~l~~~~~~~~~~------~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 326 (467)
.+ ..+.+|+.+++.++......+ +.++.|.+.++. ++.+... ......++. |++|+++++.....
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~------~~~~~~l~~-L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKV------ALMTKNMSS-LETLDVSLNSLNSH 418 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHH------HHTTTTCTT-CCEEECTTSCCBSC
T ss_pred cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccc------hhhhcCCCC-CCEEECCCCcCCCc
Confidence 11 456678888888876443333 345555555432 2211100 011345677 99999998654332
Q ss_pred ccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccc-cccccccccccccccccccCCCccccCCc
Q 012249 327 LFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTL-PRLKKLRFYDLPEFKSFCSYNGVLVCNSL 405 (467)
Q Consensus 327 l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 405 (467)
+ +...+..+++|+.|++++|. +...... .+ ++|+.|++.++ .++.++... ..+++|
T Consensus 419 ~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~------------------~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L 475 (562)
T 3a79_B 419 A-YDRTCAWAESILVLNLSSNM-LTGSVFR------------------CLPPKVKVLDLHNN-RIMSIPKDV--THLQAL 475 (562)
T ss_dssp C-SSCCCCCCTTCCEEECCSSC-CCGGGGS------------------SCCTTCSEEECCSS-CCCCCCTTT--TSSCCC
T ss_pred c-ChhhhcCcccCCEEECCCCC-CCcchhh------------------hhcCcCCEEECCCC-cCcccChhh--cCCCCC
Confidence 3 33445678899999999864 4322111 33 69999999997 677777766 478999
Q ss_pred ceEEEeCCCCccccCCc-cCcccCCCCCCCCcceeeeeh
Q 012249 406 QEIEVRRCPKLKRLSLS-LPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 406 ~~L~i~~C~~L~~lp~~-~~~l~~~~~~~~~~L~~l~i~ 443 (467)
++|++.++ +++++|.+ +..+. +|+.+++.
T Consensus 476 ~~L~L~~N-~l~~l~~~~~~~l~--------~L~~L~l~ 505 (562)
T 3a79_B 476 QELNVASN-QLKSVPDGVFDRLT--------SLQYIWLH 505 (562)
T ss_dssp SEEECCSS-CCCCCCTTSTTTCT--------TCCCEECC
T ss_pred CEEECCCC-CCCCCCHHHHhcCC--------CCCEEEec
Confidence 99999998 68899876 54444 89998887
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=5.5e-22 Score=198.65 Aligned_cols=318 Identities=17% Similarity=0.203 Sum_probs=234.9
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+..+++.+..++. +..+++|++|++++|.+..++. +.++++|+.|++++|. +..++. +..+++|++|++++|.
T Consensus 72 ~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 72 QINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ-ITDIDP--LKNLTNLNRLELSSNT 145 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEEEEEEE
T ss_pred EEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCC-CCCChH--HcCCCCCCEEECCCCc
Confidence 35666778888887 8899999999999999987766 5589999999999997 666665 5899999999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccC
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPR 178 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 178 (467)
+..++. +..+++|++|++++ .....+.+..+++|++|++++|.++.++ .+..+++|++|++++|.+..++. ++.
T Consensus 146 l~~~~~-~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~ 219 (466)
T 1o6v_A 146 ISDISA-LSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGI 219 (466)
T ss_dssp ECCCGG-GTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred cCCChh-hccCCcccEeecCC--cccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccc
Confidence 888764 89999999999974 3455556889999999999999988875 58899999999999999987766 478
Q ss_pred CCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccce
Q 012249 179 LRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKS 258 (467)
Q Consensus 179 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 258 (467)
+++|+.|++++|..... ..+..+ ++|+.|+++.+....... +..+
T Consensus 220 l~~L~~L~l~~n~l~~~---~~l~~l-~~L~~L~l~~n~l~~~~~-------------------------------~~~l 264 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI---GTLASL-TNLTDLDLANNQISNLAP-------------------------------LSGL 264 (466)
T ss_dssp CTTCCEEECCSSCCCCC---GGGGGC-TTCSEEECCSSCCCCCGG-------------------------------GTTC
T ss_pred cCCCCEEECCCCCcccc---hhhhcC-CCCCEEECCCCccccchh-------------------------------hhcC
Confidence 99999999999866543 357788 999999999887643321 1122
Q ss_pred eeeecCccccchhh----hhhhcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHH
Q 012249 259 VFLYGCKICEIKET----IVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLP 334 (467)
Q Consensus 259 ~~L~~l~l~~~~~~----~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 334 (467)
.+|+.|.+.++... ......++.|.+.++.- +. ......++. |++|++++|. +++..+ +.
T Consensus 265 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l-~~----------~~~~~~l~~-L~~L~L~~n~-l~~~~~---~~ 328 (466)
T 1o6v_A 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQL-ED----------ISPISNLKN-LTYLTLYFNN-ISDISP---VS 328 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC-SC----------CGGGGGCTT-CSEEECCSSC-CSCCGG---GG
T ss_pred CCCCEEECCCCccCccccccCCCccCeEEcCCCcc-cC----------chhhcCCCC-CCEEECcCCc-CCCchh---hc
Confidence 23444444444311 12234566666655431 11 222445677 9999999974 455434 46
Q ss_pred hhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCC
Q 012249 335 ALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCP 414 (467)
Q Consensus 335 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 414 (467)
.+++|+.|++++| .+.++... ..+++|+.|++.++.- ..+.. . ..+++|++|.+.+|
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~~l-----------------~~l~~L~~L~l~~n~l-~~~~~-~--~~l~~L~~L~l~~n- 385 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVSSL-----------------ANLTNINWLSAGHNQI-SDLTP-L--ANLTRITQLGLNDQ- 385 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGGG-----------------TTCTTCCEEECCSSCC-CBCGG-G--TTCTTCCEEECCCE-
T ss_pred cCccCCEeECCCC-ccCCchhh-----------------ccCCCCCEEeCCCCcc-Cccch-h--hcCCCCCEEeccCC-
Confidence 7889999999986 55544221 2789999999998864 33333 2 46899999999988
Q ss_pred CccccCCc
Q 012249 415 KLKRLSLS 422 (467)
Q Consensus 415 ~L~~lp~~ 422 (467)
.++.+|..
T Consensus 386 ~~~~~p~~ 393 (466)
T 1o6v_A 386 AWTNAPVN 393 (466)
T ss_dssp EEECCCBC
T ss_pred cccCCchh
Confidence 45555543
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-22 Score=197.46 Aligned_cols=299 Identities=16% Similarity=0.163 Sum_probs=211.7
Q ss_pred eEEEcCCCcccCCcC-ccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPGE-QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~-~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+...+..+..+|.. +..+++|++|+++++.+..++...+..+++|+.|++++|. +..+++..++.+++|++|++++|
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC
Confidence 455666777788875 4778999999999999998887777799999999999998 66676666789999999999999
Q ss_pred CCCCchhhh-hcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCcc
Q 012249 98 DIEVLPSSV-SDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 98 ~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 175 (467)
.+..+|..+ ..+++|++|++++|......| .+..+++|++|++++|.++.++ +..+++|+++++++|.+..+
T Consensus 128 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~---- 201 (390)
T 3o6n_A 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL---- 201 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE----
T ss_pred ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc----
Confidence 999988764 889999999999975444444 5899999999999999988774 67789999999999987654
Q ss_pred ccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccc
Q 012249 176 LPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEV 255 (467)
Q Consensus 176 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 255 (467)
....+|+.|++++|....... ... ++|+.|+++.+.+.... ++
T Consensus 202 -~~~~~L~~L~l~~n~l~~~~~----~~~-~~L~~L~l~~n~l~~~~-------------------------------~l 244 (390)
T 3o6n_A 202 -AIPIAVEELDASHNSINVVRG----PVN-VELTILKLQHNNLTDTA-------------------------------WL 244 (390)
T ss_dssp -ECCSSCSEEECCSSCCCEEEC----CCC-SSCCEEECCSSCCCCCG-------------------------------GG
T ss_pred -CCCCcceEEECCCCeeeeccc----ccc-ccccEEECCCCCCcccH-------------------------------HH
Confidence 344679999999886644322 224 78999999888653210 12
Q ss_pred cceeeeecCccccchhhhhhhcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHh
Q 012249 256 DKSVFLYGCKICEIKETIVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPA 335 (467)
Q Consensus 256 ~~~~~L~~l~l~~~~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 335 (467)
..+++|+.|+++++......+.. ...++. |++|+++++ .++.++. ....
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~---------------------------~~~l~~-L~~L~L~~n-~l~~~~~--~~~~ 293 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHP---------------------------FVKMQR-LERLYISNN-RLVALNL--YGQP 293 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGG---------------------------GTTCSS-CCEEECCSS-CCCEEEC--SSSC
T ss_pred cCCCCccEEECCCCcCCCcChhH---------------------------cccccc-CCEEECCCC-cCcccCc--ccCC
Confidence 33345566666655422111111 122455 777777774 3444422 1245
Q ss_pred hhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCC
Q 012249 336 LQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCP 414 (467)
Q Consensus 336 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 414 (467)
+++|+.|++++| .+..++... ..+++|+.|++.+++ ++.++. ..+++|++|.+.+++
T Consensus 294 l~~L~~L~L~~n-~l~~~~~~~----------------~~l~~L~~L~L~~N~-i~~~~~----~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 294 IPTLKVLDLSHN-HLLHVERNQ----------------PQFDRLENLYLDHNS-IVTLKL----STHHTLKNLTLSHND 350 (390)
T ss_dssp CTTCCEEECCSS-CCCCCGGGH----------------HHHTTCSEEECCSSC-CCCCCC----CTTCCCSEEECCSSC
T ss_pred CCCCCEEECCCC-cceecCccc----------------cccCcCCEEECCCCc-cceeCc----hhhccCCEEEcCCCC
Confidence 677777777775 444442211 167778888887765 444432 347778888877763
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.3e-22 Score=206.44 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=70.9
Q ss_pred cCccccccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccc
Q 012249 307 GKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYD 386 (467)
Q Consensus 307 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 386 (467)
..++. |+.|+++++. ++...+ ..+..+++|+.|++++| .+..++.... .+|+|+.|++.+
T Consensus 251 ~~l~~-L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~~----------------~l~~L~~L~Ls~ 310 (597)
T 3oja_B 251 LNYPG-LVEVDLSYNE-LEKIMY-HPFVKMQRLERLYISNN-RLVALNLYGQ----------------PIPTLKVLDLSH 310 (597)
T ss_dssp GGCTT-CSEEECCSSC-CCEEES-GGGTTCSSCCEEECTTS-CCCEEECSSS----------------CCTTCCEEECCS
T ss_pred ccCCC-CCEEECCCCc-cCCCCH-HHhcCccCCCEEECCCC-CCCCCCcccc----------------cCCCCcEEECCC
Confidence 34567 9999999854 444422 34577889999999885 5555432221 688999999998
Q ss_pred cccccccccCCCccccCCcceEEEeCCCCccccCCccCcccCCCCCCCCcceeeeeh
Q 012249 387 LPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLSLSLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 387 ~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
+. +..++... ..+++|+.|.+.+|+ ++.+|. ..+++|+.|++.
T Consensus 311 N~-l~~i~~~~--~~l~~L~~L~L~~N~-l~~~~~----------~~~~~L~~L~l~ 353 (597)
T 3oja_B 311 NH-LLHVERNQ--PQFDRLENLYLDHNS-IVTLKL----------STHHTLKNLTLS 353 (597)
T ss_dssp SC-CCCCGGGH--HHHTTCSEEECCSSC-CCCCCC----------CTTCCCSEEECC
T ss_pred CC-CCccCccc--ccCCCCCEEECCCCC-CCCcCh----------hhcCCCCEEEee
Confidence 75 45555444 468899999999884 666652 235588888887
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=5.5e-22 Score=197.50 Aligned_cols=167 Identities=16% Similarity=0.200 Sum_probs=111.9
Q ss_pred CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCC
Q 012249 33 EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNL 112 (467)
Q Consensus 33 ~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L 112 (467)
.+..+++|++|+++++.+..+| . +..+++|+.|++++|. +..++ ++.+++|++|++++|.+..++ ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 3455667777777777777665 3 3367777777777776 44454 467777777777777777664 6777777
Q ss_pred CEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCC-CCCcCCccccCCCCCcEEEcccCC
Q 012249 113 RSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQ-LKKFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 113 ~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
++|++++| .+..+| ++.+++|++|++++|.++.++ ++.+++|++|++++|. +..++ ++.+++|+.|++++|.
T Consensus 109 ~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 109 TYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CEEECCSS-CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence 77777775 344444 667777777777777777663 6677777777777774 44442 3667777777777775
Q ss_pred CcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 192 EALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 192 ~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
.... + ++.+ ++|+.|+++.+.+.
T Consensus 182 l~~l-~---l~~l-~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 182 ITEL-D---VSQN-KLLNRLNCDTNNIT 204 (457)
T ss_dssp CCCC-C---CTTC-TTCCEEECCSSCCS
T ss_pred ccee-c---cccC-CCCCEEECcCCcCC
Confidence 5442 1 5566 77777777766653
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.6e-22 Score=200.71 Aligned_cols=198 Identities=22% Similarity=0.199 Sum_probs=166.4
Q ss_pred eEEEcCCCcccCC-cCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFP-GEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~-~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+...++++..++ ..+..+++|++|++++|.+..+....+.++++|+.|++++|. +..+|...|.++++|++|++++|
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCC
Confidence 4566777787775 578899999999999999998866667799999999999998 77888777789999999999999
Q ss_pred CCCCc-hhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCc
Q 012249 98 DIEVL-PSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 98 ~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
.+..+ +..+..+++|++|++++|......+ .+..+++|++|++++|.++.+|. .+.++++|+.|++++|.+..++..
T Consensus 115 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 99955 5678999999999999975444445 79999999999999999998875 488999999999999999888877
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
.+.++++|+.|+++++....... ...... .+|+.|+++.+.+.
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~-~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMT-PNCLYG-LNLTSLSITHCNLT 237 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEEC-TTTTTT-CCCSEEEEESSCCC
T ss_pred hcccCcccceeeCCCCccccccC-cccccC-ccccEEECcCCccc
Confidence 77999999999999986655544 233344 58999999888664
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=9.7e-22 Score=199.80 Aligned_cols=143 Identities=20% Similarity=0.258 Sum_probs=123.6
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCc-hhhhhcCcCCCEEEcCC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVL-PSSVSDLTNLRSLSLGW 119 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 119 (467)
++++++++.++.+|..+. ++|+.|++++|. +..+++..|..+++|++|++++|.+..+ |..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 689999999999987654 899999999998 6666665679999999999999999976 77899999999999999
Q ss_pred CCCCCcCCCccccCCccEEEccCCcCcc--ccccccCCCCCcEEeccCCCCCCcCCccccCCCCC--cEEEcccCCC
Q 012249 120 CRRLKRVPSLARLLALQYLDLYDTRIEE--VPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSL--YKLKLSFGNE 192 (467)
Q Consensus 120 ~~~~~~~p~l~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 192 (467)
| .++.+|.. .+++|++|++++|.++. +|..++++++|++|++++|.+.... +..+++| +.|++++|..
T Consensus 79 N-~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 N-KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS---VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp S-CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG---GGGGTTSCEEEEEEEECTT
T ss_pred C-ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh---ccccccceeeEEEeecccc
Confidence 7 56678844 89999999999999886 5688999999999999999986622 4677778 9999998865
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=8.6e-22 Score=196.09 Aligned_cols=308 Identities=14% Similarity=0.108 Sum_probs=212.0
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+..+++.+..+| .+..+++|++|++++|.++.++ +..+++|+.|++++|. +..++ ++.+++|++|++++|.
T Consensus 46 ~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 46 SLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp EEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSSC
T ss_pred EEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCCc
Confidence 4566677888887 6889999999999999999875 4589999999999998 55555 5899999999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCC-cCccccccccCCCCCcEEeccCCCCCCcCCcccc
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDT-RIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILP 177 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 177 (467)
+..++ ++.+++|++|++++|. ++.++ ++.+++|++|++++| .+..+ .++.+++|++|++++|.+..+| ++
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~ 188 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VS 188 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CT
T ss_pred CCeec--CCCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cc
Confidence 99886 8999999999999974 55454 788999999999999 56566 4788999999999999998887 48
Q ss_pred CCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccc
Q 012249 178 RLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDK 257 (467)
Q Consensus 178 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 257 (467)
.+++|+.|++++|..... .++.+ ++|+.|+++.+.+...+ +..
T Consensus 189 ~l~~L~~L~l~~N~l~~~----~l~~l-~~L~~L~Ls~N~l~~ip--------------------------------~~~ 231 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKL----DLNQN-IQLTFLDCSSNKLTEID--------------------------------VTP 231 (457)
T ss_dssp TCTTCCEEECCSSCCSCC----CCTTC-TTCSEEECCSSCCSCCC--------------------------------CTT
T ss_pred cCCCCCEEECcCCcCCee----ccccC-CCCCEEECcCCcccccC--------------------------------ccc
Confidence 999999999999976554 37778 99999999988764321 122
Q ss_pred eeeeecCccccchhhhhhhcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchHHhhh
Q 012249 258 SVFLYGCKICEIKETIVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQ 337 (467)
Q Consensus 258 ~~~L~~l~l~~~~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 337 (467)
+.+|+.++++++......+..+..|....+ .... |+.|++++|.....++ ...++
T Consensus 232 l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l--------------------~~n~-L~~L~l~~n~~~~~~~----~~~l~ 286 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHC--------------------IQTD-LLEIDLTHNTQLIYFQ----AEGCR 286 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCCEEEC--------------------TTCC-CSCCCCTTCTTCCEEE----CTTCT
T ss_pred cCCCCEEEeeCCcCCCcCHHHCCCCCEEec--------------------cCCC-CCEEECCCCccCCccc----ccccc
Confidence 234555555555432221222222211110 0123 6777777766555442 24567
Q ss_pred ccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCcc
Q 012249 338 NLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLK 417 (467)
Q Consensus 338 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~ 417 (467)
+|+.|++++|..+..++.... .+..-. ....++|+.|++.++. ++.++ . ..+++|+.|++.++ +++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~-----~L~~L~---l~~~~~L~~L~L~~N~-l~~l~--l--~~l~~L~~L~l~~N-~l~ 352 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAA-----GITELD---LSQNPKLVYLYLNNTE-LTELD--V--SHNTKLKSLSCVNA-HIQ 352 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTC-----CCSCCC---CTTCTTCCEEECTTCC-CSCCC--C--TTCTTCSEEECCSS-CCC
T ss_pred cCCEEECCCCcccceeccCCC-----cceEec---hhhcccCCEEECCCCc-ccccc--c--ccCCcCcEEECCCC-CCC
Confidence 788888888776655532110 000001 1245566666665532 33332 1 34777888877764 344
Q ss_pred cc
Q 012249 418 RL 419 (467)
Q Consensus 418 ~l 419 (467)
++
T Consensus 353 ~l 354 (457)
T 3bz5_A 353 DF 354 (457)
T ss_dssp BC
T ss_pred Cc
Confidence 43
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-21 Score=202.52 Aligned_cols=174 Identities=17% Similarity=0.252 Sum_probs=143.7
Q ss_pred CCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCCCE
Q 012249 36 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRS 114 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~ 114 (467)
.+++++.++++++.+..+|..++..+++|+.|++++|. +..+++..|..+++|++|++++|.+..++ ..++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 45788999999999999998888789999999999998 66666555689999999999999999775 45689999999
Q ss_pred EEcCCCCCCCcCC-C-ccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCC
Q 012249 115 LSLGWCRRLKRVP-S-LARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 115 L~l~~~~~~~~~p-~-l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
|++++| .+..+| . ++.+++|++|++++|.++.++. .++.+++|++|++++|.+..++ ++.+++|+.|++++|.
T Consensus 128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 999997 566666 3 6899999999999999887654 5899999999999999998876 3678899999999885
Q ss_pred CcccccHHHHHhhhccCcEEEcccCCccch
Q 012249 192 EALRETVEEAARLSDRLDYFEGYFSTLKDF 221 (467)
Q Consensus 192 ~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 221 (467)
.... ... ..|+.|+++.+.+...
T Consensus 204 l~~l------~~~-~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 204 LSTL------AIP-IAVEELDASHNSINVV 226 (597)
T ss_dssp CSEE------ECC-TTCSEEECCSSCCCEE
T ss_pred cccc------cCC-chhheeeccCCccccc
Confidence 5432 233 6788889888876443
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=7.6e-21 Score=203.91 Aligned_cols=371 Identities=15% Similarity=0.092 Sum_probs=220.2
Q ss_pred cccC-CcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCch-hHhhcCCCCcEEEccCCCCCCc--
Q 012249 27 LLEF-PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPE-CFFVHMHGLKVVNLSSTDIEVL-- 102 (467)
Q Consensus 27 l~~~-~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-- 102 (467)
...+ |..+..+++|++|++++|.+..+....+.++++|+.|++++|.+...++. ..++++++|++|++++|.+..+
T Consensus 61 ~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence 3445 66788889999999999988877666666899999999999985554443 3457889999999999988754
Q ss_pred hhhhhcCcCCCEEEcCCCCCCCcCC-Ccccc--CC------------------------------ccEEEccCCcCc-cc
Q 012249 103 PSSVSDLTNLRSLSLGWCRRLKRVP-SLARL--LA------------------------------LQYLDLYDTRIE-EV 148 (467)
Q Consensus 103 ~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l--~~------------------------------L~~L~l~~~~~~-~l 148 (467)
+..++++++|++|++++|......+ .+..+ ++ |++|++++|.++ ..
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 220 (844)
T 3j0a_A 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220 (844)
T ss_dssp CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred chhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhH
Confidence 3568889999999998875433333 23322 22 666666666433 11
Q ss_pred cccc------------------------------------cC--CCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccC
Q 012249 149 PEGM------------------------------------EM--LENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFG 190 (467)
Q Consensus 149 p~~~------------------------------------~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 190 (467)
+..+ .. .++|+.|++++|.+..++...+..+++|+.|++++|
T Consensus 221 ~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp TSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC
T ss_pred HHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC
Confidence 1111 11 256788888888777766665678888888888888
Q ss_pred CCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccch
Q 012249 191 NEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIK 270 (467)
Q Consensus 191 ~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 270 (467)
......+ ..+..+ ++|+.|+++.|.+.... ...+..+..++.+...+..-....+..+..+.+|+.|+++++.
T Consensus 301 ~i~~~~~-~~~~~l-~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 301 KINKIAD-EAFYGL-DNLQVLNLSYNLLGELY-----SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCCEECT-TTTTTC-SSCCEEEEESCCCSCCC-----SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred cCCCCCh-HHhcCC-CCCCEEECCCCCCCccC-----HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 6654433 467778 88888888887664321 1223333334333222221111223345667788888887766
Q ss_pred hh-hhhhcccceeeeeecccccccccccc-c-----cc-c------cccccCccccccEEEEecCCCCccccccchHHhh
Q 012249 271 ET-IVLLKDVQCLQMFEVDEVTSLNDVLP-R-----EL-G------LVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPAL 336 (467)
Q Consensus 271 ~~-~~~~~~l~~L~~~~~~~l~~l~~~~~-~-----~~-~------~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l 336 (467)
.. ....+.++.|.+.++.- +.+..... + .. . ......++. |+.|+++++. ++...+...+..+
T Consensus 374 l~~i~~~~~L~~L~l~~N~l-~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~-L~~L~Ls~N~-l~~~~~~~~~~~~ 450 (844)
T 3j0a_A 374 LTTIHFIPSIPDIFLSGNKL-VTLPKINLTANLIHLSENRLENLDILYFLLRVPH-LQILILNQNR-FSSCSGDQTPSEN 450 (844)
T ss_dssp SCCCSSCCSCSEEEEESCCC-CCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTT-CCEEEEESCC-CCCCCSSSSSCSC
T ss_pred CCcccCCCCcchhccCCCCc-ccccccccccceeecccCccccCchhhhhhcCCc-cceeeCCCCc-ccccccccccccC
Confidence 32 12234566666654432 11111000 0 00 0 001225677 9999999854 4433332233457
Q ss_pred hccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCc
Q 012249 337 QNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKL 416 (467)
Q Consensus 337 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L 416 (467)
++|+.|+++++ .+........ ....+ ..+++|+.|+++++ .++.++.... ..+++|++|++.++ ++
T Consensus 451 ~~L~~L~Ls~N-~l~~~~~~~~-------~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l 516 (844)
T 3j0a_A 451 PSLEQLFLGEN-MLQLAWETEL-------CWDVF---EGLSHLQVLYLNHN-YLNSLPPGVF-SHLTALRGLSLNSN-RL 516 (844)
T ss_dssp TTCCBCEEESC-CCSSSCCSCC-------CSSCS---SCBCCEECCCCCHH-HHTTCCTTSS-SSCCSCSEEEEESC-CC
T ss_pred CccccccCCCC-cccccccccc-------chhhh---cCcccccEEECCCC-cccccChhHc-cchhhhheeECCCC-CC
Confidence 78888888874 3432211110 00111 26677777777776 3444443321 34677778887776 56
Q ss_pred cccCC
Q 012249 417 KRLSL 421 (467)
Q Consensus 417 ~~lp~ 421 (467)
+.+|.
T Consensus 517 ~~l~~ 521 (844)
T 3j0a_A 517 TVLSH 521 (844)
T ss_dssp SSCCC
T ss_pred CccCh
Confidence 66654
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2e-20 Score=186.79 Aligned_cols=346 Identities=17% Similarity=0.170 Sum_probs=234.7
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCC-Cc-hhhhhcCcCCCEEEcC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE-VL-PSSVSDLTNLRSLSLG 118 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~ 118 (467)
+.++..++.++.+|. + .++|+.|++++|. +..+++..+.++++|++|++++|.+. .+ +..+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~-l---~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L---PAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC-C---CTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccCCC-C---CCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 457777778888876 2 3789999999998 55554445689999999999999886 45 5678999999999999
Q ss_pred CCCCCCcCC-CccccCCccEEEccCCcCcc-cccc--ccCCCCCcEEeccCCCCCCc-CCccccCCCCCcEEEcccCCCc
Q 012249 119 WCRRLKRVP-SLARLLALQYLDLYDTRIEE-VPEG--MEMLENLSHLYLSSLQLKKF-PAGILPRLRSLYKLKLSFGNEA 193 (467)
Q Consensus 119 ~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 193 (467)
+|......| .++++++|++|++++|.++. +|.. +..+++|++|++++|.+..+ |..+++++++|++|++++|...
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 986555556 79999999999999999885 4444 88999999999999999877 4444689999999999999665
Q ss_pred ccccHHHHHhh-hccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccchhh
Q 012249 194 LRETVEEAARL-SDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKET 272 (467)
Q Consensus 194 ~~~~~~~l~~l-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 272 (467)
.... ..+..+ ..+|+.|+++.+.......... ... ....+....+|+.++++++...
T Consensus 168 ~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~------~~~---------------~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 168 SICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWL------GWE---------------KCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCT------THH---------------HHCCTTTTCEEEEEECTTSCCC
T ss_pred ccCh-hhhhccccccccccccccCcccccchhhc------ccc---------------ccccccccceeeeEecCCCccc
Confidence 4432 334433 1578888888776543211000 000 0011234457889999888643
Q ss_pred hhhh---------cccceeeeeecccccccccc---cccccccccccCccccccEEEEecCCCCccccccchHHhhhccc
Q 012249 273 IVLL---------KDVQCLQMFEVDEVTSLNDV---LPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLLPALQNLK 340 (467)
Q Consensus 273 ~~~~---------~~l~~L~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~ 340 (467)
...+ ..++.|.+.++......... .............+. |++|+++++.. +.. ....+..+++|+
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l-~~~-~~~~~~~l~~L~ 302 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG-VKTCDLSKSKI-FAL-LKSVFSHFTDLE 302 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC-CCEEECCSSCC-CEE-CTTTTTTCTTCC
T ss_pred ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC-ceEEEecCccc-ccc-chhhcccCCCCC
Confidence 3222 45666666555332211100 000000111112345 99999999654 443 223467899999
Q ss_pred eeeeCCccchhhhhcccCchhhhhhccccccccccccccccccccccccccccccCCCccccCCcceEEEeCCCCcccc-
Q 012249 341 VLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRL- 419 (467)
Q Consensus 341 ~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l- 419 (467)
.|++++| .+..+.... + ..+++|++|++.++. ++.+.... ...+++|++|++.+| +++.+
T Consensus 303 ~L~Ls~n-~l~~~~~~~------------~---~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~ 363 (455)
T 3v47_A 303 QLTLAQN-EINKIDDNA------------F---WGLTHLLKLNLSQNF-LGSIDSRM-FENLDKLEVLDLSYN-HIRALG 363 (455)
T ss_dssp EEECTTS-CCCEECTTT------------T---TTCTTCCEEECCSSC-CCEECGGG-GTTCTTCCEEECCSS-CCCEEC
T ss_pred EEECCCC-cccccChhH------------h---cCcccCCEEECCCCc-cCCcChhH-hcCcccCCEEECCCC-cccccC
Confidence 9999986 454442211 1 278999999999975 44443221 145899999999999 56665
Q ss_pred CCccCcccCCCCCCCCcceeeeeh
Q 012249 420 SLSLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 420 p~~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
|..+..+. +|+.+++.
T Consensus 364 ~~~~~~l~--------~L~~L~L~ 379 (455)
T 3v47_A 364 DQSFLGLP--------NLKELALD 379 (455)
T ss_dssp TTTTTTCT--------TCCEEECC
T ss_pred hhhccccc--------cccEEECC
Confidence 66665554 88888887
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.6e-21 Score=184.34 Aligned_cols=176 Identities=23% Similarity=0.295 Sum_probs=155.3
Q ss_pred CCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEE
Q 012249 37 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLS 116 (467)
Q Consensus 37 l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 116 (467)
.++++.|+++++.+..+|..+. ++++|+.|++++|. +..+|..+ +.+++|++|++++|.+..+|..++.+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~-l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAG-LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSC-CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhh-hCCCCCEEECCCCC-ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 3689999999999999998876 69999999999998 44788765 899999999999999999999999999999999
Q ss_pred cCCCCCCCcCC-Cccc---------cCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEE
Q 012249 117 LGWCRRLKRVP-SLAR---------LLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLK 186 (467)
Q Consensus 117 l~~~~~~~~~p-~l~~---------l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 186 (467)
+++|...+.+| .++. +++|++|++++|.++.+|..++++++|++|++++|.+..+|..+ +++++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l-~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG-GGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh-ccCCCCCEEE
Confidence 99988888888 4544 99999999999999999999999999999999999999888875 8999999999
Q ss_pred cccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 187 LSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 187 l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
+++|...+..+ ..++.+ ++|+.|++++|..
T Consensus 236 Ls~n~~~~~~p-~~~~~l-~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 236 LRGCTALRNYP-PIFGGR-APLKRLILKDCSN 265 (328)
T ss_dssp CTTCTTCCBCC-CCTTCC-CCCCEEECTTCTT
T ss_pred CcCCcchhhhH-HHhcCC-CCCCEEECCCCCc
Confidence 99987766554 467888 9999999988764
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=9.9e-21 Score=194.14 Aligned_cols=147 Identities=20% Similarity=0.255 Sum_probs=122.9
Q ss_pred CCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCc-hhhhhcCcCCCEE
Q 012249 37 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVL-PSSVSDLTNLRSL 115 (467)
Q Consensus 37 l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L 115 (467)
+...++++++++.++.+|..+. ++++.|++++|. +..++...|.++++|++|++++|.+..+ |..+..+++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC---TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3455899999999999987653 899999999998 6667765679999999999999999976 6778999999999
Q ss_pred EcCCCCCCCcCCCccccCCccEEEccCCcCcccc--ccccCCCCCcEEeccCCCCCCcCCccccCCCCC--cEEEcccCC
Q 012249 116 SLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVP--EGMEMLENLSHLYLSSLQLKKFPAGILPRLRSL--YKLKLSFGN 191 (467)
Q Consensus 116 ~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 191 (467)
++++| .+..+|.. .+++|++|++++|.++.++ ..++++++|++|++++|.+.... +..+++| +.|++++|.
T Consensus 106 ~Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHN-RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECTTS-CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred ECCCC-cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccc
Confidence 99997 46678844 8999999999999999765 68999999999999999986533 2455555 999999886
Q ss_pred C
Q 012249 192 E 192 (467)
Q Consensus 192 ~ 192 (467)
.
T Consensus 181 l 181 (562)
T 3a79_B 181 Y 181 (562)
T ss_dssp C
T ss_pred c
Confidence 5
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=4.6e-20 Score=176.28 Aligned_cols=306 Identities=17% Similarity=0.195 Sum_probs=190.2
Q ss_pred CCcccCCcCccCC------CCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 25 LRLLEFPGEQEWE------ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 25 ~~l~~~~~~~~~l------~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
..+.++|..+... .+++.++++++.++.+|..+ .++++.|++++|. +..++...+.++++|++|++++|.
T Consensus 14 ~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~ 89 (332)
T 2ft3_A 14 PDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK 89 (332)
T ss_dssp -----------CCCCSSCEEETTEEECCSSCCSSCCSCC---CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCC---CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc
Confidence 3445666544322 36899999999999888765 3789999999998 666665556899999999999999
Q ss_pred CCCc-hhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCC--cCC
Q 012249 99 IEVL-PSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKK--FPA 173 (467)
Q Consensus 99 ~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~--~~~ 173 (467)
+..+ |..+..+++|++|++++| .+..+| .+. ++|++|++++|.++.+|.. +.++++|++|++++|.+.. +..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 90 ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred cCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 9966 778899999999999996 566777 444 7899999999999988764 8899999999999998853 444
Q ss_pred ccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccc
Q 012249 174 GILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHL 253 (467)
Q Consensus 174 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 253 (467)
..+..+ +|+.|++++|....... .-. ++|+.|+++.+.+.... +.
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~----~~~-~~L~~L~l~~n~i~~~~-----------------------------~~ 211 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPK----DLP-ETLNELHLDHNKIQAIE-----------------------------LE 211 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCS----SSC-SSCSCCBCCSSCCCCCC-----------------------------TT
T ss_pred ccccCC-ccCEEECcCCCCCccCc----ccc-CCCCEEECCCCcCCccC-----------------------------HH
Confidence 444666 89999999886544221 112 67888888877653211 01
Q ss_pred cccceeeeecCccccchhhhhhhcccceeeeeecccccccccccccccccccccCccccccEEEEecCCCCccccccchH
Q 012249 254 EVDKSVFLYGCKICEIKETIVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKVLRFDSCKNLKNLFSLRLL 333 (467)
Q Consensus 254 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 333 (467)
.+..+.+|+.|++.++......+.. ...++. |++|+++++ .++.++. .+
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~---------------------------~~~l~~-L~~L~L~~N-~l~~lp~--~l 260 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGS---------------------------LSFLPT-LRELHLDNN-KLSRVPA--GL 260 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTG---------------------------GGGCTT-CCEEECCSS-CCCBCCT--TG
T ss_pred HhcCCCCCCEEECCCCcCCcCChhH---------------------------hhCCCC-CCEEECCCC-cCeecCh--hh
Confidence 1333445666666655322111111 123466 888888885 3445432 25
Q ss_pred HhhhccceeeeCCccchhhhhcccCchhhhhhcccccccccccccccccccccccccc-ccccCCCccccCCcceEEEeC
Q 012249 334 PALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFK-SFCSYNGVLVCNSLQEIEVRR 412 (467)
Q Consensus 334 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~i~~ 412 (467)
..+++|+.|+++++ .+..+....... ......+++|+.|.+.+++-.. .+.... ...+++|+.|.+.+
T Consensus 261 ~~l~~L~~L~l~~N-~l~~~~~~~~~~---------~~~~~~~~~l~~L~l~~N~~~~~~~~~~~-~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 261 PDLKLLQVVYLHTN-NITKVGVNDFCP---------VGFGVKRAYYNGISLFNNPVPYWEVQPAT-FRCVTDRLAIQFGN 329 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTTSSSC---------SSCCSSSCCBSEEECCSSSSCGGGSCGGG-GTTBCCSTTEEC--
T ss_pred hcCccCCEEECCCC-CCCccChhHccc---------cccccccccccceEeecCcccccccCccc-ccccchhhhhhccc
Confidence 67788888888874 455442221100 0000125667777777665321 111111 13456666666665
Q ss_pred CC
Q 012249 413 CP 414 (467)
Q Consensus 413 C~ 414 (467)
+.
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 53
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=178.81 Aligned_cols=196 Identities=20% Similarity=0.216 Sum_probs=162.3
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
+...+++++..+|..+. +++++|++++|.++.++...+.++++|+.|++++|. +..++...|.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc
Confidence 45667788899998665 489999999999998888667799999999999997 566665556899999999999999
Q ss_pred CCCchhh-hhcCcCCCEEEcCCCCCCCcCC---CccccCCccEEEccCC-cCcccc-ccccCCCCCcEEeccCCCCCCcC
Q 012249 99 IEVLPSS-VSDLTNLRSLSLGWCRRLKRVP---SLARLLALQYLDLYDT-RIEEVP-EGMEMLENLSHLYLSSLQLKKFP 172 (467)
Q Consensus 99 ~~~l~~~-~~~l~~L~~L~l~~~~~~~~~p---~l~~l~~L~~L~l~~~-~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~ 172 (467)
+..++.. +..+++|++|++++| .+..+| .+..+++|++|++++| .++.++ ..++++++|++|++++|.+..++
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 9988765 789999999999997 455665 3889999999999999 677774 56899999999999999998775
Q ss_pred CccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 173 AGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 173 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
...++++++|++|++++|.... .+...+..+ ++|+.|+++++.+..
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~-~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHIL-LLEIFVDVT-SSVECLELRDTDLDT 236 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTT-HHHHHHHHT-TTEEEEEEESCBCTT
T ss_pred HHHHhccccCCeecCCCCcccc-chhhhhhhc-ccccEEECCCCcccc
Confidence 5556899999999999987633 332345667 999999999887643
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=1.9e-19 Score=179.09 Aligned_cols=178 Identities=23% Similarity=0.287 Sum_probs=140.1
Q ss_pred ceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 18 LFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
..+..++.++..+|.. .+++++|++++|.++.+|. .+++|+.|++++|. +..++. -.++|++|++++|
T Consensus 74 ~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~-l~~l~~----~~~~L~~L~L~~n 141 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL---PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNN 141 (454)
T ss_dssp SEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSS
T ss_pred CEEEecCCccccCCCC---cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCc-cCcccC----CCCCCCEEECcCC
Confidence 3567777888888763 4689999999999988774 34789999999987 444543 1268999999999
Q ss_pred CCCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCcccc
Q 012249 98 DIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILP 177 (467)
Q Consensus 98 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 177 (467)
.+..+| .++.+++|++|++++| .+..+|.. ..+|++|++++|.++.+| .++++++|++|++++|.+..+|..
T Consensus 142 ~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--- 213 (454)
T 1jl5_A 142 QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--- 213 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---
T ss_pred CCCCCc-ccCCCCCCCEEECCCC-cCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---
Confidence 999888 5899999999999997 45566632 248999999999988887 688999999999999998877753
Q ss_pred CCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 178 RLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 178 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
..+|+.|++++|.... .+ .++.+ ++|+.|+++.+.+..
T Consensus 214 -~~~L~~L~l~~n~l~~-lp--~~~~l-~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 214 -PLSLESIVAGNNILEE-LP--ELQNL-PFLTTIYADNNLLKT 251 (454)
T ss_dssp -CTTCCEEECCSSCCSS-CC--CCTTC-TTCCEEECCSSCCSS
T ss_pred -cCcccEEECcCCcCCc-cc--ccCCC-CCCCEEECCCCcCCc
Confidence 2589999999886653 22 37788 899999998887654
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.3e-19 Score=188.44 Aligned_cols=154 Identities=23% Similarity=0.254 Sum_probs=132.2
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
....+.++.++|..+. +++++|++++|.++.++...|.++++|++|++++|. +..+++..|.++++|++|++++|.+
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcC
Confidence 3455678899998663 489999999999999998888899999999999997 7788887789999999999999999
Q ss_pred CCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcc--ccccccCCCCCcEEeccCCCCCCcCCc
Q 012249 100 EVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEE--VPEGMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 100 ~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
..+|. .+.++++|++|++++| .+..+| .++++++|++|++++|.++. +|..++.+++|++|++++|.+..++..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 98874 5789999999999997 566666 58999999999999998874 567789999999999999998777654
Q ss_pred ccc
Q 012249 175 ILP 177 (467)
Q Consensus 175 ~l~ 177 (467)
.+.
T Consensus 192 ~l~ 194 (635)
T 4g8a_A 192 DLR 194 (635)
T ss_dssp GGH
T ss_pred ccc
Confidence 333
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=4.3e-19 Score=176.47 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=106.6
Q ss_pred ccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCC
Q 012249 40 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGW 119 (467)
Q Consensus 40 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 119 (467)
+++++++++.++.+|.. .++|+.|++++|. ...+|. ..++|++|++++|.+..++.. .++|++|++++
T Consensus 73 l~~L~l~~~~l~~lp~~----~~~L~~L~l~~n~-l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL----PPHLESLVASCNS-LTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN 140 (454)
T ss_dssp CSEEECTTSCCSCCCSC----CTTCSEEECCSSC-CSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred CCEEEecCCccccCCCC----cCCCCEEEccCCc-CCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcC
Confidence 37788887777776652 3678888888776 444653 346788888888877765532 25788888887
Q ss_pred CCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHH
Q 012249 120 CRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVE 199 (467)
Q Consensus 120 ~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 199 (467)
| .+..+|+++.+++|++|++++|.++.+|..+ .+|++|++++|.+..+|. ++++++|+.|++++|.......
T Consensus 141 n-~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~-- 212 (454)
T 1jl5_A 141 N-QLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD-- 212 (454)
T ss_dssp S-CCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCC--
T ss_pred C-CCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCC--
Confidence 6 4455677777888888888888777776543 477888888887777763 4778888888888775543211
Q ss_pred HHHhhhccCcEEEcccCCcc
Q 012249 200 EAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 200 ~l~~l~~~L~~L~l~~~~~~ 219 (467)
.. .+|+.|+++.+...
T Consensus 213 ---~~-~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 213 ---LP-LSLESIVAGNNILE 228 (454)
T ss_dssp ---CC-TTCCEEECCSSCCS
T ss_pred ---Cc-CcccEEECcCCcCC
Confidence 12 57777888777654
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.9e-19 Score=171.90 Aligned_cols=190 Identities=19% Similarity=0.261 Sum_probs=152.3
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...+..+..+|..+. ++++.|++++|.++.++...+.++++|+.|++++|. +..+++..+..+++|++|++++|.+
T Consensus 36 l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 36 VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp EECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcC
Confidence 4556667788887554 589999999999998887667789999999999998 5555444458999999999999999
Q ss_pred CCchhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCc---cccccccCCCCCcEEeccCCCCCCcCCc
Q 012249 100 EVLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIE---EVPEGMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 100 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
..+|..+. ++|++|++++|. +..++ .+..+++|++|++++|.++ ..+..+.++++|++|++++|.+..+|..
T Consensus 113 ~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 113 KELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189 (330)
T ss_dssp SBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred CccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc
Confidence 98876554 789999999974 55555 5889999999999999876 3455688899999999999999888876
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
+ .++|++|++++|...... ...+..+ ++|+.|+++++.+..
T Consensus 190 ~---~~~L~~L~l~~n~l~~~~-~~~~~~l-~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 190 L---PPSLTELHLDGNKITKVD-AASLKGL-NNLAKLGLSFNSISA 230 (330)
T ss_dssp C---CTTCSEEECTTSCCCEEC-TGGGTTC-TTCCEEECCSSCCCE
T ss_pred c---cccCCEEECCCCcCCccC-HHHhcCC-CCCCEEECCCCcCce
Confidence 5 278999999998765443 3567888 999999998887643
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.7e-19 Score=187.56 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=113.5
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..+|+ .|..+++|++|++++|.++.++...|.++++|++|++++|. +..+|...|.++++|++|++++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTS
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCC
Confidence 56777888998885 68999999999999999999988888899999999999998 77888888899999999999999
Q ss_pred CCCCchh-hhhcCcCCCEEEcCCCCCCC-cCC-CccccCCccEEEccCCcCcccc
Q 012249 98 DIEVLPS-SVSDLTNLRSLSLGWCRRLK-RVP-SLARLLALQYLDLYDTRIEEVP 149 (467)
Q Consensus 98 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~p-~l~~l~~L~~L~l~~~~~~~lp 149 (467)
.+..++. .++++++|++|++++|.... ..| .++.+++|++|++++|.++.++
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 9998875 57899999999999975433 345 5889999999999999887553
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.2e-20 Score=175.74 Aligned_cols=172 Identities=18% Similarity=0.250 Sum_probs=92.3
Q ss_pred CccEEEeecCCCc---ccCCCccCCCCCCCEEEccC-CCCCCCCchhHhhcCCCCcEEEccCCCCC-CchhhhhcCcCCC
Q 012249 39 NLERVSLMRNNIE---EIPSNMSPHCEILSTLLLQR-NENLQRIPECFFVHMHGLKVVNLSSTDIE-VLPSSVSDLTNLR 113 (467)
Q Consensus 39 ~l~~L~l~~~~~~---~l~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~ 113 (467)
+++.|+++++.+. .+|..+ .++++|+.|++++ |.+...+|..+ .++++|++|++++|.+. .+|..+..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 5666666666655 244333 3566666666663 44444455443 56666666666666665 5555566666666
Q ss_pred EEEcCCCCCCCcCC-CccccCCccEEEccCCcCc-cccccccCCC-CCcEEeccCCCCC-CcCCccccCCCCCcEEEccc
Q 012249 114 SLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIE-EVPEGMEMLE-NLSHLYLSSLQLK-KFPAGILPRLRSLYKLKLSF 189 (467)
Q Consensus 114 ~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~-~lp~~~~~l~-~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~ 189 (467)
+|++++|......| .+..+++|++|++++|.++ .+|..++.++ +|++|++++|.+. .+|..+ +.++ |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcC
Confidence 66666654333445 4556666666666666555 5555555555 5666666666554 333332 4444 56666555
Q ss_pred CCCcccccHHHHHhhhccCcEEEcccC
Q 012249 190 GNEALRETVEEAARLSDRLDYFEGYFS 216 (467)
Q Consensus 190 ~~~~~~~~~~~l~~l~~~L~~L~l~~~ 216 (467)
|...... ...+..+ ++|+.|+++.+
T Consensus 207 N~l~~~~-~~~~~~l-~~L~~L~L~~N 231 (313)
T 1ogq_A 207 NMLEGDA-SVLFGSD-KNTQKIHLAKN 231 (313)
T ss_dssp SEEEECC-GGGCCTT-SCCSEEECCSS
T ss_pred CcccCcC-CHHHhcC-CCCCEEECCCC
Confidence 5333221 1334444 55555555443
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.9e-19 Score=171.47 Aligned_cols=194 Identities=22% Similarity=0.348 Sum_probs=168.1
Q ss_pred ceEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 18 LFMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
..+...++.+..+|..+..+++|++|++++|.+..+|..+. .+++|+.|++++|. +..+|..+ ..+++|++|++++|
T Consensus 84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~-l~~lp~~l-~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ-QFAGLETLTLARNP-LRALPASI-ASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGG-GGTTCSEEEEESCC-CCCCCGGG-GGCTTCCEEEEEEE
T ss_pred eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHh-ccCCCCEEECCCCc-cccCcHHH-hcCcCCCEEECCCC
Confidence 35677888999999999999999999999999998887654 89999999999998 55888764 89999999999997
Q ss_pred CCC-Cchhhhhc---------CcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCC
Q 012249 98 DIE-VLPSSVSD---------LTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSL 166 (467)
Q Consensus 98 ~~~-~l~~~~~~---------l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 166 (467)
... .+|..+.. +++|++|++++| .+..+| .++.+++|++|++++|.++.+|..++.+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 544 77776654 999999999997 566888 799999999999999999999999999999999999998
Q ss_pred CC-CCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 167 QL-KKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 167 ~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
.+ ..+|.. ++++++|+.|++++|...+..+ ..+..+ ++|+.|++++|..
T Consensus 240 ~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p-~~~~~l-~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 240 TALRNYPPI-FGGRAPLKRLILKDCSNLLTLP-LDIHRL-TQLEKLDLRGCVN 289 (328)
T ss_dssp TTCCBCCCC-TTCCCCCCEEECTTCTTCCBCC-TTGGGC-TTCCEEECTTCTT
T ss_pred cchhhhHHH-hcCCCCCCEEECCCCCchhhcc-hhhhcC-CCCCEEeCCCCCc
Confidence 86 556655 4899999999999987766655 468899 9999999998765
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=7.2e-19 Score=164.21 Aligned_cols=195 Identities=27% Similarity=0.355 Sum_probs=144.0
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...+.++..+|..+ .+++++|+++++.+..++...+..+++|+.|++++|. +..++...+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence 4556667777777654 3578888888888887776666688888888888886 455544445788888888888886
Q ss_pred -CCCc-hhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCc
Q 012249 99 -IEVL-PSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 99 -~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
+..+ +..+..+++|++|++++|......| .+..+++|++|++++|.++.++.. ++.+++|++|++++|.+..++..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 7766 5677788888888888865443334 577888888888888888877654 77888888888888888877776
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
.+.++++|+.|++++|....... ..++.+ ++|+.|+++++.+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l-~~L~~L~l~~n~l 213 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHP-HAFRDL-GRLMTLYLFANNL 213 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECT-TTTTTC-TTCCEEECCSSCC
T ss_pred HhcCccccCEEECCCCcccccCH-hHccCc-ccccEeeCCCCcC
Confidence 56788888888888876544322 456677 7777777776654
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2e-19 Score=171.88 Aligned_cols=190 Identities=21% Similarity=0.311 Sum_probs=155.4
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...+..+..+|..+. ++++.|++++|.+..++...+.++++|+.|++++|. +..+++..+..+++|++|++++|.
T Consensus 37 ~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 37 VVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC
T ss_pred EEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc
Confidence 35566778888888664 689999999999998877667799999999999998 556654556899999999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcc---ccccccCCCCCcEEeccCCCCCCcCC
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEE---VPEGMEMLENLSHLYLSSLQLKKFPA 173 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~---lp~~~~~l~~L~~L~l~~~~~~~~~~ 173 (467)
+..+|..+. ++|++|++++|. +..+| .+..+++|++|++++|.++. .|..+..+ +|++|++++|.+..+|.
T Consensus 114 l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 114 LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence 998887655 899999999974 55665 48999999999999998863 35557777 99999999999999887
Q ss_pred ccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 174 GILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 174 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
.+. ++|++|++++|...... ...+..+ ++|+.|+++++.+..
T Consensus 190 ~~~---~~L~~L~l~~n~i~~~~-~~~l~~l-~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 190 DLP---ETLNELHLDHNKIQAIE-LEDLLRY-SKLYRLGLGHNQIRM 231 (332)
T ss_dssp SSC---SSCSCCBCCSSCCCCCC-TTSSTTC-TTCSCCBCCSSCCCC
T ss_pred ccc---CCCCEEECCCCcCCccC-HHHhcCC-CCCCEEECCCCcCCc
Confidence 652 78999999998665443 2467788 999999998887643
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=6.5e-19 Score=174.98 Aligned_cols=191 Identities=26% Similarity=0.304 Sum_probs=140.8
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...+.++..+|..+. ++++.|++++|.+..++...+.++++|+.|++++|. +..++...|.++++|++|++++|.+
T Consensus 48 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 48 VICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcC
Confidence 4455666777777554 478888888888887776666688888888888887 5566655667888888888888888
Q ss_pred CCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCC-cCccccc-cccCCCCCcEEeccCCCCCCcCCc
Q 012249 100 EVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDT-RIEEVPE-GMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 100 ~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
..++. .+..+++|++|++++|. +..++ .+..+++|++|+++++ .+..++. .+.++++|++|++++|.+..+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-
Confidence 87764 56778888888888864 44554 5778888888888875 6666665 47788888888888888877775
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
+..+++|+.|++++|....... ..+..+ ++|+.|+++.+.+
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l-~~L~~L~L~~n~l 243 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRP-GSFQGL-MHLQKLWMIQSQI 243 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECT-TTTTTC-TTCCEEECTTCCC
T ss_pred -cCCCcccCEEECCCCccCccCh-hhhccC-ccCCEEECCCCce
Confidence 4778888888888876544332 567777 7888888877654
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=5.5e-19 Score=168.66 Aligned_cols=123 Identities=24% Similarity=0.326 Sum_probs=55.2
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCc-hhhhhcCcCCCEEEc
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVL-PSSVSDLTNLRSLSL 117 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l 117 (467)
+++.++++++.++.+|..+ .++++.|++++|. +..++...+.++++|++|++++|.+..+ |..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3455555554444444332 2345555555554 3333333334555555555555554433 444444555555555
Q ss_pred CCCCCCCcCC-CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCC
Q 012249 118 GWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQL 168 (467)
Q Consensus 118 ~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 168 (467)
++| .++.+| .+. ++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 108 s~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 108 SKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp CSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred CCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence 543 233333 221 344444444444443332 244444444444444444
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=7.1e-19 Score=175.32 Aligned_cols=191 Identities=28% Similarity=0.312 Sum_probs=137.4
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...+.++..+|..+. +++++|++++|.+..++...+.++++|+.|++++|. +..++...|.++++|++|++++|.+
T Consensus 59 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcC
Confidence 4455566777776554 477888888888877766666678888888888886 5555555567788888888888888
Q ss_pred CCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCC-cCccccc-cccCCCCCcEEeccCCCCCCcCCc
Q 012249 100 EVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDT-RIEEVPE-GMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 100 ~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
..++. .+..+++|++|++++|. +..+| .+.++++|++|++++| .+..++. .+.++++|++|++++|.+..+|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN- 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-
T ss_pred CccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-
Confidence 76654 36678888888888864 44554 5778888888888875 6666665 37778888888888888877765
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
+..+++|+.|++++|......+ ..+..+ ++|+.|+++++.+
T Consensus 214 -~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l-~~L~~L~L~~n~l 254 (452)
T 3zyi_A 214 -LTPLVGLEELEMSGNHFPEIRP-GSFHGL-SSLKKLWVMNSQV 254 (452)
T ss_dssp -CTTCTTCCEEECTTSCCSEECG-GGGTTC-TTCCEEECTTSCC
T ss_pred -ccccccccEEECcCCcCcccCc-ccccCc-cCCCEEEeCCCcC
Confidence 4677888888888876654433 567777 7888888777654
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=9.2e-20 Score=172.55 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=157.5
Q ss_pred EEEcCCCcc---cCCcCccCCCCccEEEeec-CCCc-ccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEc
Q 012249 20 MVKAGLRLL---EFPGEQEWEENLERVSLMR-NNIE-EIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNL 94 (467)
Q Consensus 20 ~~~~~~~l~---~~~~~~~~l~~l~~L~l~~-~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 94 (467)
+...+..+. .+|..+..+++|++|++++ |.+. .+|.. +.++++|++|++++|.+...+|.. +..+++|++|++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L 132 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDF 132 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEEC
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeC
Confidence 344456665 5888999999999999995 8877 56555 458999999999999855567765 489999999999
Q ss_pred cCCCCC-CchhhhhcCcCCCEEEcCCCCCCCcCC-CccccC-CccEEEccCCcCc-cccccccCCCCCcEEeccCCCCCC
Q 012249 95 SSTDIE-VLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLL-ALQYLDLYDTRIE-EVPEGMEMLENLSHLYLSSLQLKK 170 (467)
Q Consensus 95 ~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~-~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~ 170 (467)
++|.+. .+|..+..+++|++|++++|...+.+| .++.+. +|++|++++|.++ .+|..+..++ |++|++++|.+..
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 999998 788999999999999999986555788 789998 9999999999888 6788888887 9999999999876
Q ss_pred cCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 171 FPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 171 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
.+...+.++++|+.|++++|......+ .+..+ ++|+.|+++.|.+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l-~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLS-KNLNGLDLRNNRI 256 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGG--GCCCC-TTCCEEECCSSCC
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecC--ccccc-CCCCEEECcCCcc
Confidence 666556999999999999986643332 25556 6777777766643
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2e-18 Score=159.76 Aligned_cols=194 Identities=25% Similarity=0.381 Sum_probs=167.0
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...+.++..+|..+. +++++|++++|.+..++...+.++++|+.|++++|. +..++..+|..+++|++|++++|.
T Consensus 20 ~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc
Confidence 46677888899998664 589999999999998888777799999999999998 667888878899999999999999
Q ss_pred CCCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCc
Q 012249 99 IEVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 99 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
+..++. .+..+++|++|++++|. +..++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..++..
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 998764 56889999999999975 55554 588999999999999999988865 78999999999999999999887
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
.+.++++|+.|++++|..... +...+..+ ++|+.|++++|..
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l-~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRV-PEGAFDSL-EKLKMLQLQENPW 217 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCC-CTTTTTTC-TTCCEEECCSSCB
T ss_pred HhccCCCcCEEECCCCcCCcC-CHHHhccc-cCCCEEEecCCCe
Confidence 778999999999999966543 33457788 9999999988875
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3e-19 Score=168.60 Aligned_cols=192 Identities=20% Similarity=0.221 Sum_probs=155.3
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCC---chhHhhcCCCCcEEEccC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRI---PECFFVHMHGLKVVNLSS 96 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~ 96 (467)
+...+.++..+|..+. +++++|++++|.++.++...+.++++|+.|++++|. +..+ +..+ ..+++|++|++++
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLSF 87 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECCS
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCccccc-ccccccCEEECCC
Confidence 5556777888887554 589999999999999988877789999999999997 4433 4443 5789999999999
Q ss_pred CCCCCchhhhhcCcCCCEEEcCCCCCCCcCC---CccccCCccEEEccCCcCccc-cccccCCCCCcEEeccCCCCCC--
Q 012249 97 TDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP---SLARLLALQYLDLYDTRIEEV-PEGMEMLENLSHLYLSSLQLKK-- 170 (467)
Q Consensus 97 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p---~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~-- 170 (467)
|.+..+|..+..+++|++|++++|. +...+ .+..+++|++|++++|.+... +..+..+++|++|++++|.+.+
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 9999888888999999999999974 44443 588899999999999988854 4558889999999999998864
Q ss_pred cCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 171 FPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 171 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
+|.. +..+++|+.|++++|....... ..++.+ ++|+.|+++++.+.
T Consensus 167 ~~~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l-~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 167 LPDI-FTELRNLTFLDLSQCQLEQLSP-TAFNSL-SSLQVLNMSHNNFF 212 (306)
T ss_dssp ECSC-CTTCTTCCEEECTTSCCCEECT-TTTTTC-TTCCEEECTTSCCS
T ss_pred chhH-HhhCcCCCEEECCCCCcCCcCH-HHhcCC-CCCCEEECCCCccC
Confidence 5555 4899999999999986655432 567788 89999999888653
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=5.9e-19 Score=175.29 Aligned_cols=198 Identities=27% Similarity=0.300 Sum_probs=172.8
Q ss_pred eEEEcCCCcccCC-cCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFP-GEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~-~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+...++.+..++ ..+..+++|++|++++|.+..++...+.++++|+.|++++|. +..++...|..+++|++|++++|
T Consensus 68 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp EEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC
T ss_pred EEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCC
Confidence 4566677777776 578899999999999999998887778899999999999997 67788777789999999999999
Q ss_pred CCCCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCc
Q 012249 98 DIEVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 98 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
.+..++. .+..+++|++|++++|..+..++ .+..+++|++|++++|.++.+| .+..+++|+.|++++|.+..++..
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTT
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChh
Confidence 9997764 67899999999999988888877 5899999999999999999998 588999999999999999888776
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
.+.++++|+.|++++|....... ..+..+ ++|+.|++++|.+..
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l-~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIER-NAFDNL-QSLVEINLAHNNLTL 269 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECT-TSSTTC-TTCCEEECTTSCCCC
T ss_pred hhccCccCCEEECCCCceeEECh-hhhcCC-CCCCEEECCCCCCCc
Confidence 67999999999999997655443 568888 999999999987643
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=7.8e-19 Score=175.05 Aligned_cols=198 Identities=25% Similarity=0.285 Sum_probs=172.8
Q ss_pred eEEEcCCCcccC-CcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEF-PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~-~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+...++.+..+ +..+..+++|++|++++|.+..++...+.++++|+.|++++|. +..++...|..+++|++|++++|
T Consensus 79 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC
T ss_pred EEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC
Confidence 456667777777 4578899999999999999998887777799999999999998 67788777789999999999999
Q ss_pred CCCCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCc
Q 012249 98 DIEVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 98 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
.+..++. .+.++++|++|++++|..++.++ .+..+++|++|++++|.++.+| .+..+++|+.|++++|.+..++..
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGG
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcc
Confidence 9997764 67899999999999988888887 5899999999999999999887 588999999999999999888777
Q ss_pred cccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 175 ILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
.+.++++|+.|++++|....... ..+..+ ++|+.|++++|.+..
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l-~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIER-NAFDGL-ASLVELNLAHNNLSS 280 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECT-TTTTTC-TTCCEEECCSSCCSC
T ss_pred cccCccCCCEEEeCCCcCceECH-HHhcCC-CCCCEEECCCCcCCc
Confidence 67999999999999997755443 568888 999999999987643
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=5.3e-18 Score=158.29 Aligned_cols=198 Identities=24% Similarity=0.243 Sum_probs=168.2
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..++. .+..+++|++|++++|.++.+....+..+++|+.|++++|..+..++...+..+++|++|++++|
T Consensus 36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 45666777777775 57889999999999999998866667789999999999997566775556789999999999999
Q ss_pred CCCCc-hhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCC
Q 012249 98 DIEVL-PSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPA 173 (467)
Q Consensus 98 ~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~ 173 (467)
.+..+ +..+..+++|++|++++|. +..++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..++.
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 116 GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 99966 5678899999999999974 55555 488999999999999999988864 8899999999999999988755
Q ss_pred ccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 174 GILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 174 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
..+.++++|+.|++++|.... .....+..+ ++|+.|++++|.+.
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l-~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSA-LPTEALAPL-RALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSC-CCHHHHTTC-TTCCEEECCSSCEE
T ss_pred hHccCcccccEeeCCCCcCCc-CCHHHcccC-cccCEEeccCCCcc
Confidence 556899999999999997654 444678899 99999999988763
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.5e-18 Score=163.79 Aligned_cols=172 Identities=22% Similarity=0.250 Sum_probs=139.6
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCc---hhhhhcCcCCCEEEc
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVL---PSSVSDLTNLRSLSL 117 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l 117 (467)
+.++.+++.++.+|..+ .++++.|++++|. +..+|..+|.++++|++|++++|.+..+ +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 56788888888888764 3689999999998 6688887788999999999999998854 677788999999999
Q ss_pred CCCCCCCcCC-CccccCCccEEEccCCcCccccc--cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcc
Q 012249 118 GWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPE--GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEAL 194 (467)
Q Consensus 118 ~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 194 (467)
++| .+..+| .+..+++|++|++++|.++.++. .+..+++|++|++++|.+...+...+.++++|++|++++|....
T Consensus 86 s~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 997 455666 68889999999999998887764 68899999999999999876666656889999999999886544
Q ss_pred cccHHHHHhhhccCcEEEcccCCc
Q 012249 195 RETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 195 ~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
......+..+ ++|+.|+++.+.+
T Consensus 165 ~~~~~~~~~l-~~L~~L~Ls~n~l 187 (306)
T 2z66_A 165 NFLPDIFTEL-RNLTFLDLSQCQL 187 (306)
T ss_dssp GEECSCCTTC-TTCCEEECTTSCC
T ss_pred ccchhHHhhC-cCCCEEECCCCCc
Confidence 2222456677 8888888877754
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=172.83 Aligned_cols=175 Identities=21% Similarity=0.239 Sum_probs=153.4
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..++. .+..+++|++|++++|.++.++...+.++++|+.|++++|. +..++...++.+++|++|++++|
T Consensus 56 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC
T ss_pred EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC
Confidence 45667788888877 78899999999999999998877667799999999999998 67788877799999999999999
Q ss_pred CCCCchh--hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccc-cccccCCCCCcEEeccCCCCCCcC
Q 012249 98 DIEVLPS--SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEV-PEGMEMLENLSHLYLSSLQLKKFP 172 (467)
Q Consensus 98 ~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~ 172 (467)
.+..+|. .+..+++|++|++++|..++.++ .+..+++|++|++++|.++.+ |..++.+++|++|++++|.+..++
T Consensus 135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 9998876 67899999999999986666665 689999999999999998866 677999999999999999998888
Q ss_pred CccccCCCCCcEEEcccCCCcc
Q 012249 173 AGILPRLRSLYKLKLSFGNEAL 194 (467)
Q Consensus 173 ~~~l~~l~~L~~L~l~~~~~~~ 194 (467)
..++..+++|+.|++++|....
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTT
T ss_pred hhhhhhcccccEEECCCCcccc
Confidence 7766779999999999986544
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=4.2e-17 Score=167.35 Aligned_cols=150 Identities=22% Similarity=0.244 Sum_probs=79.1
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+..+++++..+|..+. ++|++|++++|.++.+|. .+++|+.|++++|. +..+|. .+++|++|++++|.
T Consensus 44 ~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNP 112 (622)
T ss_dssp EEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSCC
T ss_pred EEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCCc
Confidence 34445555555555443 455666666665555544 34556666666655 344443 44556666666665
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccC
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPR 178 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 178 (467)
+..+|. .+.+|++|++++| .+..+|. .+++|++|++++|.++.+|.. +.+|+.|++++|.+..+| ..
T Consensus 113 l~~l~~---~l~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~----~~ 179 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP----ML 179 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC----CC
T ss_pred CCCCCC---CCCCcCEEECCCC-CCCcCCC--CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc----cc
Confidence 555544 4455566666554 3444442 125555666665555555432 345555555555555554 23
Q ss_pred CCCCcEEEcccCCC
Q 012249 179 LRSLYKLKLSFGNE 192 (467)
Q Consensus 179 l~~L~~L~l~~~~~ 192 (467)
+++|+.|++++|..
T Consensus 180 ~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 180 PSGLQELSVSDNQL 193 (622)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCcEEECCCCCC
Confidence 45555555555543
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.5e-18 Score=179.07 Aligned_cols=302 Identities=16% Similarity=0.034 Sum_probs=150.3
Q ss_pred hcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCC---CcCC-CccccCCccEEEccCCcCccccccccCCCCCc
Q 012249 84 VHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRL---KRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLS 159 (467)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~---~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~ 159 (467)
..+++|++|++++|.+..++..+..+++|++|+++.+... ...+ .+..+++|+.|+++++....+|..+..+++|+
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 3444555555555444444444444555555555432111 1111 34555566666665554445555566666666
Q ss_pred EEeccCCCCCCcCC-ccccCCCCCcEEEcccCCCcccccHHHH-HhhhccCcEEEccc----------CCccchhhhhhc
Q 012249 160 HLYLSSLQLKKFPA-GILPRLRSLYKLKLSFGNEALRETVEEA-ARLSDRLDYFEGYF----------STLKDFNIYVKS 227 (467)
Q Consensus 160 ~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~~L~~L~l~~----------~~~~~~~~~~~~ 227 (467)
+|++++|.+..... .++.++++|+.|++..+ . ....+..+ ..+ ++|+.|+++. +......
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~-~~~~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~~~~~----- 368 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNV-I-GDRGLEVLAQYC-KQLKRLRIERGADEQGMEDEEGLVSQR----- 368 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-G-HHHHHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCCCCHH-----
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-c-CHHHHHHHHHhC-CCCCEEEeecCccccccccccCccCHH-----
Confidence 66666666432111 22356666666666622 1 22222333 333 6666666662 1111000
Q ss_pred cCCCCChhhhhhhhhcCCCccccccccccceeeeecCccccchhh-------hhhhcccceeeeeecc---ccccccccc
Q 012249 228 TDGRGSKNYCLALSAHGMGGCLVTHLEVDKSVFLYGCKICEIKET-------IVLLKDVQCLQMFEVD---EVTSLNDVL 297 (467)
Q Consensus 228 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------~~~~~~l~~L~~~~~~---~l~~l~~~~ 297 (467)
.+.. ....+++|+.|.+..+... ....+.++.|.+.++. .++...
T Consensus 369 --------~~~~--------------l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p--- 423 (592)
T 3ogk_B 369 --------GLIA--------------LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP--- 423 (592)
T ss_dssp --------HHHH--------------HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC---
T ss_pred --------HHHH--------------HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch---
Confidence 0000 0122345555555322211 1124467888887543 333210
Q ss_pred cccccccc-ccCccccccEEEEecCCC-CccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhcccccccccc
Q 012249 298 PRELGLVN-IGKFSHDLKVLRFDSCKN-LKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVT 375 (467)
Q Consensus 298 ~~~~~~~~-~~~~~~~L~~L~l~~c~~-l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 375 (467)
. +..+.. ...++. |++|+++.|.+ +++.........+++|+.|++++|. +.+..... . ...
T Consensus 424 ~-~~~~~~~~~~~~~-L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~-----------~---~~~ 486 (592)
T 3ogk_B 424 L-DNGVRSLLIGCKK-LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME-----------F---SRG 486 (592)
T ss_dssp C-HHHHHHHHHHCTT-CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH-----------H---HTC
T ss_pred H-HHHHHHHHHhCCC-CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHH-----------H---Hhc
Confidence 0 000100 223566 99999988764 3432222233457889999999874 43311000 0 126
Q ss_pred ccccccccccccccccccccCCCccccCCcceEEEeCCCCccccCCccCcccCCCCCCCCcceeeeeh
Q 012249 376 LPRLKKLRFYDLPEFKSFCSYNGVLVCNSLQEIEVRRCPKLKRLSLSLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 376 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
+++|++|++.+|+ ++..........+++|++|.+.+|+ ++.. +++.+. ..+|.+....+.
T Consensus 487 ~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~--~~~~l~----~~~p~l~~~~~~ 546 (592)
T 3ogk_B 487 CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT--GQDLMQ----MARPYWNIELIP 546 (592)
T ss_dssp CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT--CTTGGG----GCCTTEEEEEEC
T ss_pred CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH--HHHHHH----HhCCCcEEEEec
Confidence 8999999999998 5432221112468999999999997 5543 343333 224455554444
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2.9e-19 Score=169.54 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=124.1
Q ss_pred ccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCC
Q 012249 40 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGW 119 (467)
Q Consensus 40 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 119 (467)
+...+++.+.+.+.+..++..+++|+.|++++|. +..++...+..+++|++|++++|.+...+. +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 4444555555555545555567789999999987 555665556888999999999988876554 78888999999988
Q ss_pred CCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHH
Q 012249 120 CRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVE 199 (467)
Q Consensus 120 ~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 199 (467)
|. +..+ ...++|++|++++|.++.++.. .+++|++|++++|.+..++...++.+++|+.|++++|....... .
T Consensus 90 n~-l~~l---~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~ 162 (317)
T 3o53_A 90 NY-VQEL---LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-A 162 (317)
T ss_dssp SE-EEEE---EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-G
T ss_pred Cc-cccc---cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH-H
Confidence 63 3333 3447888999998888877543 36788999999998888776556788889999998886655433 3
Q ss_pred HH-HhhhccCcEEEcccCCcc
Q 012249 200 EA-ARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 200 ~l-~~l~~~L~~L~l~~~~~~ 219 (467)
.+ ..+ ++|+.|+++++.+.
T Consensus 163 ~~~~~l-~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 163 ELAASS-DTLEHLNLQYNFIY 182 (317)
T ss_dssp GGGGGT-TTCCEEECTTSCCC
T ss_pred HHhhcc-CcCCEEECCCCcCc
Confidence 33 467 88888888887653
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.7e-17 Score=153.63 Aligned_cols=191 Identities=22% Similarity=0.213 Sum_probs=152.1
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...++++..+|..+. ++++.|++++|.+..++...+..+++|+.|++++|. +..++.. ..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 14 EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD--GTLPVLGTLDLSHNQ 88 (290)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC--SCCTTCCEEECCSSC
T ss_pred EEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC--CCCCcCCEEECCCCc
Confidence 35566777888887664 588899999998887766666688999999999987 5555543 678889999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCcc
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~ 175 (467)
+..+|..+..+++|++|++++| .++.+| .+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..+|..+
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH
Confidence 8888888888899999999986 455554 588889999999999988887765 678899999999999998888877
Q ss_pred ccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 176 LPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 176 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
+.++++|+.|++++|...... ..+... ..|+.+.+.+|..
T Consensus 168 ~~~l~~L~~L~L~~N~l~~ip--~~~~~~-~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 168 LNGLENLDTLLLQENSLYTIP--KGFFGS-HLLPFAFLHGNPW 207 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCC--TTTTTT-CCCSEEECCSCCB
T ss_pred hcCcCCCCEEECCCCcCCccC--hhhccc-ccCCeEEeCCCCc
Confidence 788899999999988665332 345566 7888888887765
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.2e-19 Score=181.39 Aligned_cols=335 Identities=19% Similarity=0.116 Sum_probs=189.2
Q ss_pred ccCCCCccEEEeecCCCcc-----cCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCC----CCcEEEccCCCCC----
Q 012249 34 QEWEENLERVSLMRNNIEE-----IPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMH----GLKVVNLSSTDIE---- 100 (467)
Q Consensus 34 ~~~l~~l~~L~l~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~---- 100 (467)
+..++++++|++++|.++. ++.. +..+++|+.|++++|.+....+..++..++ +|++|++++|.+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 4556778888888887762 2332 336788888888887633222334444455 6888888888776
Q ss_pred -CchhhhhcCcCCCEEEcCCCCCCCcC-C-Cc-----cccCCccEEEccCCcCcc-----ccccccCCCCCcEEeccCCC
Q 012249 101 -VLPSSVSDLTNLRSLSLGWCRRLKRV-P-SL-----ARLLALQYLDLYDTRIEE-----VPEGMEMLENLSHLYLSSLQ 167 (467)
Q Consensus 101 -~l~~~~~~l~~L~~L~l~~~~~~~~~-p-~l-----~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~ 167 (467)
.++..+..+++|++|++++|. ++.. + .+ ....+|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 346677778888888888764 3322 1 12 224568888888887763 34456677888888888877
Q ss_pred CCCcCCccc-----cCCCCCcEEEcccCCCcccc---cHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhh
Q 012249 168 LKKFPAGIL-----PRLRSLYKLKLSFGNEALRE---TVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLA 239 (467)
Q Consensus 168 ~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 239 (467)
+.......+ ...++|++|++++|...... -...+..+ ++|+.|+++.+.+.+... ..
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~--------------~~ 246 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGM--------------AE 246 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHH--------------HH
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHH--------------HH
Confidence 643222111 13557888888877554321 12345566 788888887776533210 00
Q ss_pred hhhcCCCccccccccccceeeeecCccccchhhhh----h------hcccceeeeeeccccccccccccccccccc-c-c
Q 012249 240 LSAHGMGGCLVTHLEVDKSVFLYGCKICEIKETIV----L------LKDVQCLQMFEVDEVTSLNDVLPRELGLVN-I-G 307 (467)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~----~------~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~-~-~ 307 (467)
+. ........+|+.|+++++..... + .+.++.|.+.++. ++..... .+.. . .
T Consensus 247 l~----------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~-----~l~~~l~~ 310 (461)
T 1z7x_W 247 LC----------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGAR-----LLCETLLE 310 (461)
T ss_dssp HH----------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHH-----HHHHHHTS
T ss_pred HH----------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHH-----HHHHHhcc
Confidence 00 00011233555666655542211 1 2345566555442 1110000 0000 0 1
Q ss_pred CccccccEEEEecCCCCccccc---cchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccccccccccccc
Q 012249 308 KFSHDLKVLRFDSCKNLKNLFS---LRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRF 384 (467)
Q Consensus 308 ~~~~~L~~L~l~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 384 (467)
..+. |++|++++|. ++.... ...+..+++|+.|++++| .+.+.....- .. .+. ...++|++|++
T Consensus 311 ~~~~-L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l-------~~-~l~--~~~~~L~~L~L 377 (461)
T 1z7x_W 311 PGCQ-LESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL-------CQ-GLG--QPGSVLRVLWL 377 (461)
T ss_dssp TTCC-CCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHH-------HH-HHT--STTCCCCEEEC
T ss_pred CCcc-ceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHH-------HH-HHc--CCCCceEEEEC
Confidence 1245 9999999986 333211 123456799999999987 4554311110 00 000 02679999999
Q ss_pred ccccccc-----ccccCCCccccCCcceEEEeCCCCccc
Q 012249 385 YDLPEFK-----SFCSYNGVLVCNSLQEIEVRRCPKLKR 418 (467)
Q Consensus 385 ~~~~~l~-----~~~~~~~~~~~~~L~~L~i~~C~~L~~ 418 (467)
.+|. ++ .++... ..+++|++|++.+|+ +++
T Consensus 378 ~~n~-i~~~~~~~l~~~l--~~~~~L~~L~l~~N~-i~~ 412 (461)
T 1z7x_W 378 ADCD-VSDSSCSSLAATL--LANHSLRELDLSNNC-LGD 412 (461)
T ss_dssp TTSC-CCHHHHHHHHHHH--HHCCCCCEEECCSSS-CCH
T ss_pred CCCC-CChhhHHHHHHHH--HhCCCccEEECCCCC-CCH
Confidence 9985 44 333332 358999999999984 543
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.4e-17 Score=151.28 Aligned_cols=192 Identities=13% Similarity=0.206 Sum_probs=154.6
Q ss_pred CCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccC-CCCCCc
Q 012249 24 GLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSS-TDIEVL 102 (467)
Q Consensus 24 ~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l 102 (467)
+.++.++|. +. +++++|++++|.++.++...+.++++|+.|++++|..+..++...|..+++|++|++++ |.+..+
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 444788887 43 38999999999999888877778999999999999656777776678999999999998 899877
Q ss_pred h-hhhhcCcCCCEEEcCCCCCCCcCCCccccCCcc---EEEccCC-cCcccccc-ccCCCCCc-EEeccCCCCCCcCCcc
Q 012249 103 P-SSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQ---YLDLYDT-RIEEVPEG-MEMLENLS-HLYLSSLQLKKFPAGI 175 (467)
Q Consensus 103 ~-~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~---~L~l~~~-~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~ 175 (467)
+ ..+..+++|++|++++| .+..+|.+..+.+|+ +|++++| .++.+|.. +..+++|+ .|++++|.+..+|..+
T Consensus 97 ~~~~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp CTTSEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred CHHHhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 6 46788999999999997 456677777777777 9999999 99988765 88999999 9999999999888877
Q ss_pred ccCCCCCcEEEcccCC-CcccccHHHHHhhhccCcEEEcccCCccch
Q 012249 176 LPRLRSLYKLKLSFGN-EALRETVEEAARLSDRLDYFEGYFSTLKDF 221 (467)
Q Consensus 176 l~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 221 (467)
+.. ++|+.|++++|. ... .+...+..+.++|+.|+++.+.+...
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred cCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCccccC
Confidence 555 899999999985 443 32233443326899999998877554
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=9.9e-17 Score=148.37 Aligned_cols=174 Identities=28% Similarity=0.435 Sum_probs=152.7
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+...++.+..++. .+..+++|++|++++|.++.++..++..+++|+.|++++|. +..++...|..+++|++|++++|
T Consensus 41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS
T ss_pred EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC
Confidence 45666777888876 68899999999999999999998888889999999999998 67777777889999999999999
Q ss_pred CCCCch-hhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCC
Q 012249 98 DIEVLP-SSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPA 173 (467)
Q Consensus 98 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~ 173 (467)
.+..++ ..+..+++|++|++++| .+..+| .+..+++|++|++++|.++.++.. +..+++|++|++++|.+..++.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 999775 45689999999999997 466666 488999999999999999988764 8899999999999999999998
Q ss_pred ccccCCCCCcEEEcccCCCcc
Q 012249 174 GILPRLRSLYKLKLSFGNEAL 194 (467)
Q Consensus 174 ~~l~~l~~L~~L~l~~~~~~~ 194 (467)
..+..+++|+.|++++|....
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHhccccCCCEEEecCCCeeC
Confidence 877899999999999986543
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.9e-17 Score=153.69 Aligned_cols=194 Identities=23% Similarity=0.212 Sum_probs=153.9
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
....+.++..+|..+. +++++|++++|.++.++...+.++++|+.|++++|. +..++...+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCcc
Confidence 4455666778887654 489999999999998887667789999999999997 6667666678999999999999999
Q ss_pred CCch-hhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcc--ccccccCCCCCcEEeccCCCCCCcCCcc
Q 012249 100 EVLP-SSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEE--VPEGMEMLENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 100 ~~l~-~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 175 (467)
..++ ..+..+++|++|++++|......+ .++.+++|++|++++|.++. +|..++++++|++|++++|.+..++...
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 9665 678899999999999975443333 68899999999999998886 6788999999999999999998887655
Q ss_pred ccCCCCCc----EEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 176 LPRLRSLY----KLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 176 l~~l~~L~----~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
+..+++|+ .|++++|....... ..... .+|+.|+++++.+.
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~--~~~~~-~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQP--GAFKE-IRLKELALDTNQLK 213 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECT--TSSCS-CCEEEEECCSSCCS
T ss_pred hhhhhhccccceeeecCCCcccccCc--cccCC-CcccEEECCCCcee
Confidence 55555555 88898886654332 22334 57899999888764
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=4.8e-16 Score=159.47 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=131.0
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcC
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLG 118 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 118 (467)
+++.++++++.++.+|..+. ++|+.|++++|. +..+|. .+++|++|++++|.+..+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 68999999999999988653 799999999998 667775 67899999999999999886 78999999999
Q ss_pred CCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccH
Q 012249 119 WCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETV 198 (467)
Q Consensus 119 ~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 198 (467)
+| .+..+|. .+.+|++|++++|.++.+|.. +++|++|++++|.+..+|. .+.+|+.|++++|......
T Consensus 110 ~N-~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 110 SN-PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp SC-CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred CC-cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc--
Confidence 97 5666776 678899999999999998865 4899999999999988875 3578999999998665432
Q ss_pred HHHHhhhccCcEEEcccCCccc
Q 012249 199 EEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 199 ~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
..+ ++|+.|+++.|.+..
T Consensus 178 ---~~~-~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 178 ---MLP-SGLQELSVSDNQLAS 195 (622)
T ss_dssp ---CCC-TTCCEEECCSSCCSC
T ss_pred ---ccC-CCCcEEECCCCCCCC
Confidence 345 899999999887644
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=1.6e-16 Score=145.23 Aligned_cols=173 Identities=26% Similarity=0.351 Sum_probs=138.6
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...+..+..+|..+. ++++.|++++|.+..++...+.++++|+.|++++|. +..++...|..+++|++|++++|.
T Consensus 18 ~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc
Confidence 46667778888887665 488899999998887777667788999999999987 555666666888999999999998
Q ss_pred CCCch-hhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCc
Q 012249 99 IEVLP-SSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAG 174 (467)
Q Consensus 99 ~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~ 174 (467)
+..++ ..+..+++|++|++++| .+..+| .+..+.+|++|++++|.++.+|. .++.+++|++|++++|.+..++..
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 88765 45678899999999986 455555 36888899999999998888876 478888999999999988888876
Q ss_pred cccCCCCCcEEEcccCCCccc
Q 012249 175 ILPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 175 ~l~~l~~L~~L~l~~~~~~~~ 195 (467)
.+.++++|+.|++++|.....
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 668888899999988866443
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=3.9e-17 Score=151.30 Aligned_cols=177 Identities=25% Similarity=0.361 Sum_probs=147.4
Q ss_pred ccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchh-hhhcCcCC
Q 012249 34 QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPS-SVSDLTNL 112 (467)
Q Consensus 34 ~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L 112 (467)
...+++++.+++.++.+..++. +..+++|+.|++++|. +..++ .+..+++|++|++++|.+..++. .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNK-LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCC-CCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 3456789999999999887754 3479999999999998 45554 35899999999999999997764 46889999
Q ss_pred CEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEccc
Q 012249 113 RSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSF 189 (467)
Q Consensus 113 ~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 189 (467)
++|++++|. +..++ .++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+..++...++.+++|+.|++++
T Consensus 112 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 999999975 55555 488999999999999999988765 68999999999999999988887778999999999999
Q ss_pred CCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 190 GNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 190 ~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
|....... ..++.+ ++|+.|++++|..
T Consensus 191 N~l~~~~~-~~~~~l-~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 191 NQLKSVPD-GVFDRL-TSLQYIWLHDNPW 217 (272)
T ss_dssp SCCSCCCT-TTTTTC-TTCCEEECCSSCB
T ss_pred CcCCccCH-HHHhCC-cCCCEEEccCCCc
Confidence 97665433 457888 9999999988865
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.3e-16 Score=150.57 Aligned_cols=168 Identities=20% Similarity=0.231 Sum_probs=75.0
Q ss_pred CCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEE
Q 012249 37 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLS 116 (467)
Q Consensus 37 l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 116 (467)
++++++|+++++.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 3344455554444444431 1244445555554444 333333 344445555555554444443 344444555555
Q ss_pred cCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccc
Q 012249 117 LGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRE 196 (467)
Q Consensus 117 l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 196 (467)
+++| .+..++.+..+++|++|++++|.++.++. ++.+++|++|++++|.+..++. +..+++|+.|++++|......
T Consensus 114 l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 114 LTST-QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp CTTS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCC-CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 5443 23333344444445555554444444432 4444445555554444444443 244444555554444332221
Q ss_pred cHHHHHhhhccCcEEEcccCCc
Q 012249 197 TVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 197 ~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
.+..+ ++|+.|++++|.+
T Consensus 190 ---~l~~l-~~L~~L~L~~N~l 207 (308)
T 1h6u_A 190 ---PLASL-PNLIEVHLKNNQI 207 (308)
T ss_dssp ---GGGGC-TTCCEEECTTSCC
T ss_pred ---hhcCC-CCCCEEEccCCcc
Confidence 13444 4444444444444
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=6.7e-17 Score=150.03 Aligned_cols=197 Identities=19% Similarity=0.175 Sum_probs=162.4
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..++. .+..+++|++|++++|.+..++...+.++++|+.|++++|. +..++...+.++++|++|++++|
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC
Confidence 45666777877776 78889999999999999998887777789999999999998 56666556789999999999999
Q ss_pred CCCCchh-hhhcCcCCCEEEcCCCCCCC-cCC-CccccCCccEEEccCCcCccccc-cccCCCCCc----EEeccCCCCC
Q 012249 98 DIEVLPS-SVSDLTNLRSLSLGWCRRLK-RVP-SLARLLALQYLDLYDTRIEEVPE-GMEMLENLS----HLYLSSLQLK 169 (467)
Q Consensus 98 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~p-~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~----~L~l~~~~~~ 169 (467)
.+..++. .+..+++|++|++++|.... .+| .+..+++|++|++++|.++.++. .+..+.+|+ .|++++|.+.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 9997754 68899999999999975443 256 79999999999999999997754 466666666 8999999999
Q ss_pred CcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 170 KFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 170 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
.++...+ ...+|+.|++++|..... +...+..+ ++|+.|++++|.+.
T Consensus 191 ~~~~~~~-~~~~L~~L~L~~n~l~~~-~~~~~~~l-~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 191 FIQPGAF-KEIRLKELALDTNQLKSV-PDGIFDRL-TSLQKIWLHTNPWD 237 (276)
T ss_dssp EECTTSS-CSCCEEEEECCSSCCSCC-CTTTTTTC-CSCCEEECCSSCBC
T ss_pred ccCcccc-CCCcccEEECCCCceeec-CHhHhccc-ccccEEEccCCccc
Confidence 9888763 455899999999976543 33456788 99999999988763
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.3e-16 Score=149.12 Aligned_cols=179 Identities=24% Similarity=0.278 Sum_probs=154.9
Q ss_pred ccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCC
Q 012249 34 QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLR 113 (467)
Q Consensus 34 ~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~ 113 (467)
+..+++++.++++++.++.+|..+. ++++.|++++|. +..++...|..+++|++|++++|.+..++.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 4567789999999999999987753 789999999998 5666666678999999999999999987654 7899999
Q ss_pred EEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCC
Q 012249 114 SLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 114 ~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
+|++++| .+..+| .+..+++|++|++++|.++.+|. .+..+++|++|++++|.+..++..++..+++|+.|++++|.
T Consensus 81 ~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999996 567788 68899999999999999998874 58999999999999999999999888899999999999997
Q ss_pred CcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 192 EALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 192 ~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
..... ...+..+ ++|+.|+++.|.+..
T Consensus 160 l~~l~-~~~~~~l-~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 160 LTELP-AGLLNGL-ENLDTLLLQENSLYT 186 (290)
T ss_dssp CSCCC-TTTTTTC-TTCCEEECCSSCCCC
T ss_pred CCccC-HHHhcCc-CCCCEEECCCCcCCc
Confidence 65433 2457788 999999999988754
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=6.4e-19 Score=176.15 Aligned_cols=349 Identities=16% Similarity=0.107 Sum_probs=213.5
Q ss_pred CCccEEEeecCCCcccC-CCccCCCCCCCEEEccCCCCCC----CCchhHhhcCCCCcEEEccCCCCCC-chhhh-hcCc
Q 012249 38 ENLERVSLMRNNIEEIP-SNMSPHCEILSTLLLQRNENLQ----RIPECFFVHMHGLKVVNLSSTDIEV-LPSSV-SDLT 110 (467)
Q Consensus 38 ~~l~~L~l~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~-~~l~ 110 (467)
+++++|+++++.+...+ ..++..+++|+.|++++|.+.. .++ ..+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 47899999999987432 2234578999999999998322 223 345788999999999998873 23333 3355
Q ss_pred ----CCCEEEcCCCCCCC----cCC-CccccCCccEEEccCCcCccc-cc----c-ccCCCCCcEEeccCCCCCCcC---
Q 012249 111 ----NLRSLSLGWCRRLK----RVP-SLARLLALQYLDLYDTRIEEV-PE----G-MEMLENLSHLYLSSLQLKKFP--- 172 (467)
Q Consensus 111 ----~L~~L~l~~~~~~~----~~p-~l~~l~~L~~L~l~~~~~~~l-p~----~-~~~l~~L~~L~l~~~~~~~~~--- 172 (467)
+|++|++++|.... .++ .+..+++|++|++++|.++.. +. . ....++|++|++++|.+....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999985332 234 588899999999999987732 22 2 234678999999999886533
Q ss_pred -CccccCCCCCcEEEcccCCCcccccHHHHHh-----hhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCC
Q 012249 173 -AGILPRLRSLYKLKLSFGNEALRETVEEAAR-----LSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMG 246 (467)
Q Consensus 173 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-----l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~ 246 (467)
...+..+++|++|++++|.... ..+..+.. . ++|+.|+++++......
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~-~~L~~L~L~~n~l~~~~------------------------ 215 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINE-AGVRVLCQGLKDSP-CQLEALKLESCGVTSDN------------------------ 215 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHHHSC-CCCCEEECTTSCCBTTH------------------------
T ss_pred HHHHHhhCCCCCEEECcCCCcch-HHHHHHHHHHhcCC-CCceEEEccCCCCcHHH------------------------
Confidence 1224678999999999986533 22334433 3 59999999988764321
Q ss_pred ccccccccccceeeeecCccccchhhhh-----------hhcccceeeeeecccccccccccccccccccccCccccccE
Q 012249 247 GCLVTHLEVDKSVFLYGCKICEIKETIV-----------LLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGKFSHDLKV 315 (467)
Q Consensus 247 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----------~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 315 (467)
...++..+..+++|+.++++++..... ....++.|.+.+| .++..... .+ ......++. |++
T Consensus 216 -~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~l---~~~l~~~~~-L~~ 288 (461)
T 1z7x_W 216 -CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCG-DL---CRVLRAKES-LKE 288 (461)
T ss_dssp -HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHH-HH---HHHHHHCTT-CCE
T ss_pred -HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHH-HH---HHHHhhCCC-cce
Confidence 000111133445677777777652211 1356777777766 23321100 00 001222466 999
Q ss_pred EEEecCCCCccccccchHHh----hhccceeeeCCccchhhhhcccCchhhhhhcccccccccccccccccccccccccc
Q 012249 316 LRFDSCKNLKNLFSLRLLPA----LQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFK 391 (467)
Q Consensus 316 L~l~~c~~l~~l~~~~~~~~----l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 391 (467)
|+++++. +++......... .++|+.|++++|. +........ ......+++|++|++.++. +.
T Consensus 289 L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l-----------~~~l~~~~~L~~L~Ls~n~-i~ 354 (461)
T 1z7x_W 289 LSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF-----------SSVLAQNRFLLELQISNNR-LE 354 (461)
T ss_dssp EECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH-----------HHHHHHCSSCCEEECCSSB-CH
T ss_pred EECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH-----------HHHHhhCCCccEEEccCCc-cc
Confidence 9999863 443222111122 2589999999874 332210000 0011267999999999874 44
Q ss_pred ccccCCCc----cccCCcceEEEeCCCCcc-----ccCCccCcccCCCCCCCCcceeeeeh
Q 012249 392 SFCSYNGV----LVCNSLQEIEVRRCPKLK-----RLSLSLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 392 ~~~~~~~~----~~~~~L~~L~i~~C~~L~-----~lp~~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
+....... ...++|++|.+.+| +++ .+|..+...+ +|+++++.
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~--------~L~~L~l~ 406 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANH--------SLRELDLS 406 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCC--------CCCEEECC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCC--------CccEEECC
Confidence 33211100 12679999999999 565 4665554443 66666655
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=5.4e-17 Score=147.32 Aligned_cols=191 Identities=14% Similarity=0.146 Sum_probs=156.6
Q ss_pred eEEEcCCCcccCCc-CccCCCCccEEEeecCC-CcccCCCccCCCCCCCEEEccC-CCCCCCCchhHhhcCCCCcEEEcc
Q 012249 19 FMVKAGLRLLEFPG-EQEWEENLERVSLMRNN-IEEIPSNMSPHCEILSTLLLQR-NENLQRIPECFFVHMHGLKVVNLS 95 (467)
Q Consensus 19 ~~~~~~~~l~~~~~-~~~~l~~l~~L~l~~~~-~~~l~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~ 95 (467)
.+...++.+..+|. .+..+++|++|++++|. ++.++...+.++++|+.|++++ |. +..++...|..+++|++|+++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCC
Confidence 45666778888877 67889999999999996 8888877777899999999998 76 667776667889999999999
Q ss_pred CCCCCCchhhhhcCcCCC---EEEcCCCCCCCcCC--CccccCCcc-EEEccCCcCccccccccCCCCCcEEeccCCC-C
Q 012249 96 STDIEVLPSSVSDLTNLR---SLSLGWCRRLKRVP--SLARLLALQ-YLDLYDTRIEEVPEGMEMLENLSHLYLSSLQ-L 168 (467)
Q Consensus 96 ~~~~~~l~~~~~~l~~L~---~L~l~~~~~~~~~p--~l~~l~~L~-~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~-~ 168 (467)
+|.+..+|. +..+++|+ +|++++|..++.+| .+..+++|+ +|++++|.++.+|......++|+.|++++|+ +
T Consensus 114 ~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 114 NTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL 192 (239)
T ss_dssp EECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTC
T ss_pred CCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCc
Confidence 999998886 78888888 99999975677666 488999999 9999999999888765555899999999995 8
Q ss_pred CCcCCccccCC-CCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccC
Q 012249 169 KKFPAGILPRL-RSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFS 216 (467)
Q Consensus 169 ~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 216 (467)
..++...+.++ ++|+.|++++|....... . .+ ++|+.|.+.++
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~---~~-~~L~~L~l~~~ 236 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K---GL-EHLKELIARNT 236 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCCCCCC-T---TC-TTCSEEECTTC
T ss_pred ccCCHHHhhccccCCcEEECCCCccccCCh-h---Hh-ccCceeeccCc
Confidence 88888777888 999999999986654332 1 56 78888887654
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.5e-18 Score=179.05 Aligned_cols=366 Identities=15% Similarity=0.096 Sum_probs=186.7
Q ss_pred CCCCccEEEeecCCCccc-CCCccCCCCC-CCEEEccCCCCCCC-CchhHhhcCCCCcEEEccCCCCCC-----chhhhh
Q 012249 36 WEENLERVSLMRNNIEEI-PSNMSPHCEI-LSTLLLQRNENLQR-IPECFFVHMHGLKVVNLSSTDIEV-----LPSSVS 107 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~~l-~~~~~~~l~~-L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~~~ 107 (467)
.+++|++|+++++.++.. ...+...+++ |+.|++.+|..... -...+...+++|++|++++|.+.. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 355666666666654421 1111111333 66666666642111 011223466777777777775431 333445
Q ss_pred cCcCCCEEEcCCCCCC----CcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCC----CCcCCccccC
Q 012249 108 DLTNLRSLSLGWCRRL----KRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQL----KKFPAGILPR 178 (467)
Q Consensus 108 ~l~~L~~L~l~~~~~~----~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~----~~~~~~~l~~ 178 (467)
.+++|++|++++|... ..++ .+.++++|++|++++|.+..+|..+..+++|++|+++.+.. ...+.. +..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhc
Confidence 6677777777765332 1122 24566777777777777666766677777777777764321 112222 356
Q ss_pred CCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccchhhhhhccCCCCChhhhhhhhhcCCCccccccccccce
Q 012249 179 LRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKDFNIYVKSTDGRGSKNYCLALSAHGMGGCLVTHLEVDKS 258 (467)
Q Consensus 179 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 258 (467)
+++|+.|++..+..... ...+..+ ++|+.|+++++...... ..........+ +.|.................+
T Consensus 269 ~~~L~~L~l~~~~~~~l--~~~~~~~-~~L~~L~Ls~~~l~~~~-~~~~~~~~~~L---~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEM--PILFPFA-AQIRKLDLLYALLETED-HCTLIQKCPNL---EVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp CTTCCEEEETTCCTTTG--GGGGGGG-GGCCEEEETTCCCCHHH-HHHHHTTCTTC---CEEEEEGGGHHHHHHHHHHHC
T ss_pred cccccccCccccchhHH--HHHHhhc-CCCcEEecCCCcCCHHH-HHHHHHhCcCC---CEEeccCccCHHHHHHHHHhC
Confidence 66777776665421111 1234455 78888888877643211 11101111111 111111000001111112344
Q ss_pred eeeecCcccc----------c-hhh-------hhhhcccceeeeeecccccccccccccccccccccC-ccccccEEEEe
Q 012249 259 VFLYGCKICE----------I-KET-------IVLLKDVQCLQMFEVDEVTSLNDVLPRELGLVNIGK-FSHDLKVLRFD 319 (467)
Q Consensus 259 ~~L~~l~l~~----------~-~~~-------~~~~~~l~~L~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~L~l~ 319 (467)
++|+.|++.. + ... ....+.++.|.+ .|..++... ...... +++ |++|++.
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~--------~~~l~~~~~~-L~~L~l~ 411 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNES--------LESIGTYLKN-LCDFRLV 411 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHH--------HHHHHHHCCS-CCEEEEE
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHH--------HHHHHhhCCC-CcEEEEe
Confidence 5667777662 2 110 112346667766 444433211 111222 566 9999998
Q ss_pred c---CCCCccccc----cchHHhhhccceeeeCCccc-hhhhhcccCchhhhhhcccccccccccccccccccccccccc
Q 012249 320 S---CKNLKNLFS----LRLLPALQNLKVLAVISCNS-IEEIVAVEDEDTEKELATNTIINTVTLPRLKKLRFYDLPEFK 391 (467)
Q Consensus 320 ~---c~~l~~l~~----~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 391 (467)
+ |+.+++.+. ...+.++++|+.|+++.|.+ +.+..... + ...+++|+.|++.+|. ++
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~------------~--~~~~~~L~~L~L~~n~-l~ 476 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY------------I--GQYSPNVRWMLLGYVG-ES 476 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH------------H--HHSCTTCCEEEECSCC-SS
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH------------H--HHhCccceEeeccCCC-CC
Confidence 4 556665311 11256788999999987764 22211000 0 1158999999999876 43
Q ss_pred ccccCCCccccCCcceEEEeCCCCccc--cCCccCcccCCCCCCCCcceeeeeh
Q 012249 392 SFCSYNGVLVCNSLQEIEVRRCPKLKR--LSLSLPLLDHGQPSPPAALKVIKIE 443 (467)
Q Consensus 392 ~~~~~~~~~~~~~L~~L~i~~C~~L~~--lp~~~~~l~~~~~~~~~~L~~l~i~ 443 (467)
..........+++|++|++.+|+ +++ ++..... +++|+.+.+.
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~--------l~~L~~L~ls 521 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK--------LPSLRYLWVQ 521 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH--------CSSCCEEEEE
T ss_pred HHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh--------cCccCeeECc
Confidence 32111111457999999999998 654 3332323 3488888877
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.9e-16 Score=149.28 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=150.4
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...+..+..++ .+..+++|++|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+
T Consensus 46 L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 46 LSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVSA--IAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCEEECTTSCC
T ss_pred EEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCchh--hcCCCCCCEEECCCCCC
Confidence 455566777776 57788899999999998887766 4588999999999997 555653 57899999999999998
Q ss_pred CCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCC
Q 012249 100 EVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRL 179 (467)
Q Consensus 100 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 179 (467)
..++. +..+++|++|++++| .+..++.+..+++|++|++++|.++.++. +..+++|++|++++|.+.+++. +..+
T Consensus 120 ~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l 194 (308)
T 1h6u_A 120 TDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASL 194 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred CCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCC
Confidence 88765 888999999999986 56666668889999999999998888776 8889999999999999888776 4788
Q ss_pred CCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 180 RSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
++|+.|++++|...... .+..+ ++|+.|+++++.+
T Consensus 195 ~~L~~L~L~~N~l~~~~---~l~~l-~~L~~L~l~~N~i 229 (308)
T 1h6u_A 195 PNLIEVHLKNNQISDVS---PLANT-SNLFIVTLTNQTI 229 (308)
T ss_dssp TTCCEEECTTSCCCBCG---GGTTC-TTCCEEEEEEEEE
T ss_pred CCCCEEEccCCccCccc---cccCC-CCCCEEEccCCee
Confidence 99999999998765543 36778 8899999887765
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=2.9e-18 Score=162.65 Aligned_cols=171 Identities=14% Similarity=0.115 Sum_probs=132.9
Q ss_pred cCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCE
Q 012249 35 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRS 114 (467)
Q Consensus 35 ~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 114 (467)
..+++|++|++++|.++.++...+..+++|+.|++++|.+ ...++ +..+++|++|++++|.+..++ ..++|++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD--LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-Ccchh--hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 3456899999999999887766666899999999999984 44443 588999999999999887665 3489999
Q ss_pred EEcCCCCCCCcCCCccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCc-cccCCCCCcEEEcccCCC
Q 012249 115 LSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAG-ILPRLRSLYKLKLSFGNE 192 (467)
Q Consensus 115 L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 192 (467)
|++++|. +...+ ...+++|++|++++|.++.++. .++.+++|++|++++|.+..++.. +...+++|++|++++|..
T Consensus 104 L~l~~n~-l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 104 LHAANNN-ISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp EECCSSC-CSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECCCCc-cCCcC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 9999974 44444 1236789999999999987755 588899999999999998776543 335789999999999876
Q ss_pred cccccHHHHHhhhccCcEEEcccCCc
Q 012249 193 ALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 193 ~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
..... ...+ ++|+.|++++|.+
T Consensus 182 ~~~~~---~~~l-~~L~~L~Ls~N~l 203 (317)
T 3o53_A 182 YDVKG---QVVF-AKLKTLDLSSNKL 203 (317)
T ss_dssp CEEEC---CCCC-TTCCEEECCSSCC
T ss_pred ccccc---cccc-ccCCEEECCCCcC
Confidence 54422 2346 8888888887765
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=3.2e-16 Score=150.63 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=158.6
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcE-EEccCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKV-VNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~~ 97 (467)
.+...+.++.++|..+ .+++++|++++|.++.++...|.++++|+.|++++|.....++...|.++++++. +.+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 4567778899999876 3589999999999999999888899999999999998667788877889988775 566678
Q ss_pred CCCCc-hhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCC-cCcccccc-ccCC-CCCcEEeccCCCCCCc
Q 012249 98 DIEVL-PSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDT-RIEEVPEG-MEML-ENLSHLYLSSLQLKKF 171 (467)
Q Consensus 98 ~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~-~~~~lp~~-~~~l-~~L~~L~l~~~~~~~~ 171 (467)
.+..+ |..+..+++|++|++++| .+..+| ......++..+++.++ .+..++.. +..+ ..++.|++++|.++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 89877 466789999999999996 566666 4556677889999776 78888754 5555 4689999999999999
Q ss_pred CCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 172 PAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 172 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
+..+ ....+|+++.+..+...+..+...++.+ ++|+.|+++.+.+.
T Consensus 170 ~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l-~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 170 HNSA-FNGTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIH 215 (350)
T ss_dssp CTTS-STTEEEEEEECTTCTTCCCCCTTTTTTE-ECCSEEECTTSCCC
T ss_pred Chhh-ccccchhHHhhccCCcccCCCHHHhccC-cccchhhcCCCCcC
Confidence 9887 4667899999987555555554567889 99999999888653
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=8.7e-16 Score=142.14 Aligned_cols=170 Identities=28% Similarity=0.406 Sum_probs=144.3
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...++.+..++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|. +..++...+..+++|++|++++|.+
T Consensus 46 L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 46 IIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp EECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcC
Confidence 455566666655 4788999999999999998764 34589999999999998 6677777678999999999999999
Q ss_pred CCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCcc
Q 012249 100 EVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 100 ~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~ 175 (467)
..++. .+..+++|++|++++| .+..++ .+..+++|++|++++|.++.++.. ++.+++|++|++++|.+..++...
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence 97764 4689999999999997 455655 478999999999999999988765 689999999999999999888877
Q ss_pred ccCCCCCcEEEcccCCCcc
Q 012249 176 LPRLRSLYKLKLSFGNEAL 194 (467)
Q Consensus 176 l~~l~~L~~L~l~~~~~~~ 194 (467)
++++++|+.|++++|....
T Consensus 201 ~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTTCTTCCEEECCSSCBCC
T ss_pred HhCCcCCCEEEccCCCccc
Confidence 7999999999999986543
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=7.1e-16 Score=140.96 Aligned_cols=174 Identities=25% Similarity=0.363 Sum_probs=148.8
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCCCEEEc
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRSLSL 117 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l 117 (467)
..++++++++.++.+|..+. ++++.|++++|. +..++...+.++++|++|++++|.+..++ ..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC---CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 56789999999999988753 689999999998 55666555689999999999999999765 45789999999999
Q ss_pred CCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcc
Q 012249 118 GWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEAL 194 (467)
Q Consensus 118 ~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 194 (467)
++|. +..++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..++...++++++|+.|++++|....
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9975 55555 578999999999999999988875 6899999999999999999998767899999999999997764
Q ss_pred cccHHHHHhhhccCcEEEcccCCcc
Q 012249 195 RETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 195 ~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
... ..+..+ ++|+.|++++|.+.
T Consensus 170 ~~~-~~~~~l-~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 VPH-GAFDRL-GKLQTITLFGNQFD 192 (251)
T ss_dssp CCT-TTTTTC-TTCCEEECCSCCBC
T ss_pred cCH-HHHhCC-CCCCEEEeeCCcee
Confidence 433 567888 99999999998763
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=3.9e-16 Score=156.65 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=89.8
Q ss_pred CCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEc
Q 012249 61 CEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDL 140 (467)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l 140 (467)
+++|+.|++++|. +..+++..|..+++|++|++++|.+...++ +..+++|++|++++| .+..+| ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~---~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL---VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE---ECTTCCEEEC
T ss_pred CCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC---CCCCcCEEEC
Confidence 3467777777766 344444444667777777777776664443 666677777777765 233332 2366777777
Q ss_pred cCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHH-hhhccCcEEEcccCCc
Q 012249 141 YDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAA-RLSDRLDYFEGYFSTL 218 (467)
Q Consensus 141 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~~~ 218 (467)
++|.++.++.. .+++|+.|++++|.+..++...++++++|+.|++++|......+ ..+. .+ ++|+.|++++|.+
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l-~~L~~L~Ls~N~l 181 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASS-DTLEHLNLQYNFI 181 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGT-TTCCEEECTTSCC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhC-CcccEEecCCCcc
Confidence 77766655432 35667777777777766654444667777777777765544332 3333 56 6777777766654
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.3e-17 Score=172.07 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=60.5
Q ss_pred CCCccEEEeecCCCccc-CCCccCCCCCCCEEEccCCCCCCC-CchhHhhcCCCCcEEEccCCCCCC-----chhhhhcC
Q 012249 37 EENLERVSLMRNNIEEI-PSNMSPHCEILSTLLLQRNENLQR-IPECFFVHMHGLKVVNLSSTDIEV-----LPSSVSDL 109 (467)
Q Consensus 37 l~~l~~L~l~~~~~~~l-~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~l 109 (467)
+++|++|+++++.++.. ...+...+++|+.|++.+|..... ....++..+++|++|++++|.+.. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45566666666554421 111111355666666666532222 112233456666666666665331 22222345
Q ss_pred cCCCEEEcCCCCCCCcCC-----C-ccccCCccEEEccCC-cCccccccccCCCCCcEEecc
Q 012249 110 TNLRSLSLGWCRRLKRVP-----S-LARLLALQYLDLYDT-RIEEVPEGMEMLENLSHLYLS 164 (467)
Q Consensus 110 ~~L~~L~l~~~~~~~~~p-----~-l~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~ 164 (467)
++|++|++++|. ..+. . ...+++|++|++++| .+..+|..+.++++|++|+++
T Consensus 184 ~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 184 TSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 566666666553 1111 1 234466666666665 444454445555555555543
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=1.6e-15 Score=141.72 Aligned_cols=171 Identities=23% Similarity=0.282 Sum_probs=147.7
Q ss_pred cCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCE
Q 012249 35 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRS 114 (467)
Q Consensus 35 ~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 114 (467)
..+++++.|+++++.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+..++. +..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 457789999999999988864 3479999999999998 556665 5899999999999999998765 899999999
Q ss_pred EEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcc
Q 012249 115 LSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEAL 194 (467)
Q Consensus 115 L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 194 (467)
|++++| .+..++.+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.+++. +..+++|+.|++++|....
T Consensus 117 L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 117 LSLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EECCCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999997 566677899999999999999999988 578999999999999999988876 5899999999999996655
Q ss_pred cccHHHHHhhhccCcEEEcccCCcc
Q 012249 195 RETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 195 ~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
. ..+..+ ++|+.|+++++...
T Consensus 193 l---~~l~~l-~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 L---RALAGL-KNLDVLELFSQECL 213 (291)
T ss_dssp C---GGGTTC-TTCSEEEEEEEEEE
T ss_pred C---hhhccC-CCCCEEECcCCccc
Confidence 3 347888 99999999888653
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=1e-15 Score=144.68 Aligned_cols=178 Identities=19% Similarity=0.161 Sum_probs=107.5
Q ss_pred CCCCccEEEeecCCCc-ccCCCcc-CCCCCCCEEEccCCCCCCCCchhHhhcC-----CCCcEEEccCCCCCCch-hhhh
Q 012249 36 WEENLERVSLMRNNIE-EIPSNMS-PHCEILSTLLLQRNENLQRIPECFFVHM-----HGLKVVNLSSTDIEVLP-SSVS 107 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~-~l~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~l~-~~~~ 107 (467)
.+++|++|++++|.+. ..|..++ ..+++|+.|++++|. +...|.. +..+ ++|++|++++|.+..++ ..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 4567777777777776 4555442 467777777777776 3333433 3444 67777777777777554 5667
Q ss_pred cCcCCCEEEcCCCCCCCcC--C-C--ccccCCccEEEccCCcCccccc---c-ccCCCCCcEEeccCCCCCCcC-Ccccc
Q 012249 108 DLTNLRSLSLGWCRRLKRV--P-S--LARLLALQYLDLYDTRIEEVPE---G-MEMLENLSHLYLSSLQLKKFP-AGILP 177 (467)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~--p-~--l~~l~~L~~L~l~~~~~~~lp~---~-~~~l~~L~~L~l~~~~~~~~~-~~~l~ 177 (467)
.+++|++|++++|...+.. + . +..+++|++|++++|.++.++. . +..+++|++|++++|.+...+ ...+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 7777777777776544331 2 2 2667777777777777664332 2 346677777777777765543 22235
Q ss_pred CCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 178 RLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 178 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
.+++|+.|++++|....... .+ . ++|+.|++++|.+..
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~--~~--~-~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPK--GL--P-AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCS--SC--C-SEEEEEECCSSCCCS
T ss_pred hcCCCCEEECCCCccChhhh--hc--c-CCceEEECCCCCCCC
Confidence 56777777777765542211 11 1 466777777766544
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.1e-14 Score=136.09 Aligned_cols=164 Identities=24% Similarity=0.357 Sum_probs=142.3
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...++.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.
T Consensus 50 ~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 50 QIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHNG 123 (291)
T ss_dssp EEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECTTSC
T ss_pred EEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh--hccCCCCCEEECCCCc
Confidence 35556777777754 7889999999999999998776 4589999999999998 556654 5899999999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccC
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPR 178 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 178 (467)
+..++ .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..
T Consensus 124 i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~ 198 (291)
T 1h6t_A 124 ISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAG 198 (291)
T ss_dssp CCCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTT
T ss_pred CCCCh-hhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hcc
Confidence 99874 6889999999999997 56666789999999999999999998876 9999999999999999998875 589
Q ss_pred CCCCcEEEcccCCCc
Q 012249 179 LRSLYKLKLSFGNEA 193 (467)
Q Consensus 179 l~~L~~L~l~~~~~~ 193 (467)
+++|+.|++++|...
T Consensus 199 l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 199 LKNLDVLELFSQECL 213 (291)
T ss_dssp CTTCSEEEEEEEEEE
T ss_pred CCCCCEEECcCCccc
Confidence 999999999998543
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=5.1e-16 Score=148.33 Aligned_cols=172 Identities=18% Similarity=0.134 Sum_probs=122.5
Q ss_pred CccEEEeecCCCcccCCCccCCC--CCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCC--chhhhhcCcCCCE
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHC--EILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEV--LPSSVSDLTNLRS 114 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~ 114 (467)
.++.++++++.+.. ..+..+ ++++.+++.++.+....+ .+ ..+++|++|++++|.+.. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~-~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLA-EH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCC-SC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccch-hh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 46788888776651 122244 788888888887433333 33 478888899988888762 6777788888999
Q ss_pred EEcCCCCCCCcCC-CccccCCccEEEccCC-cCc--cccccccCCCCCcEEeccCC-CCCC--cCCccccCCC-CCcEEE
Q 012249 115 LSLGWCRRLKRVP-SLARLLALQYLDLYDT-RIE--EVPEGMEMLENLSHLYLSSL-QLKK--FPAGILPRLR-SLYKLK 186 (467)
Q Consensus 115 L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~-~~~~--~~~~~l~~l~-~L~~L~ 186 (467)
|++++|......+ .++++++|++|++++| .++ .++..+.++++|++|++++| .+.. ++.. +..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEE
Confidence 9988875433444 5777888999999888 677 36666788889999999888 7754 3443 37788 899999
Q ss_pred cccCC--CcccccHHHHHhhhccCcEEEcccCC
Q 012249 187 LSFGN--EALRETVEEAARLSDRLDYFEGYFST 217 (467)
Q Consensus 187 l~~~~--~~~~~~~~~l~~l~~~L~~L~l~~~~ 217 (467)
+++|. .....-...+..+ ++|+.|+++.+.
T Consensus 202 l~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~ 233 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSV 233 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHC-TTCSEEECTTCT
T ss_pred eCCCcccCCHHHHHHHHhhC-CCCCEEeCCCCC
Confidence 98874 2222222355677 899999998775
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=3.1e-15 Score=144.30 Aligned_cols=171 Identities=23% Similarity=0.330 Sum_probs=97.7
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhh-cCCCCcEEEccCCCCCCch-hhhhcCcCCCEEEcC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFV-HMHGLKVVNLSSTDIEVLP-SSVSDLTNLRSLSLG 118 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~ 118 (467)
+.++.+++.++.+|..+. +.++.|++++|. +..++...+. .+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 355555566665555432 345666666665 4444444444 5666666666666666544 345566666666666
Q ss_pred CCCCCCcCC--CccccCCccEEEccCCcCccc-cccccCCCCCcEEeccCCCCCCcCCccc---cCCCCCcEEEcccCCC
Q 012249 119 WCRRLKRVP--SLARLLALQYLDLYDTRIEEV-PEGMEMLENLSHLYLSSLQLKKFPAGIL---PRLRSLYKLKLSFGNE 192 (467)
Q Consensus 119 ~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~ 192 (467)
+|. +..++ .+..+.+|++|++++|.++.+ |..+..+++|++|++++|.+..+|..++ ..+++|+.|++++|.+
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 653 33333 356666666666666666655 3346666666666666666666666554 3466666666666644
Q ss_pred cccccHHHHHhhhcc--CcEEEcccCCc
Q 012249 193 ALRETVEEAARLSDR--LDYFEGYFSTL 218 (467)
Q Consensus 193 ~~~~~~~~l~~l~~~--L~~L~l~~~~~ 218 (467)
.. .+...+..+ +. ++.|++.+|.+
T Consensus 176 ~~-l~~~~~~~l-~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KK-LPLTDLQKL-PAWVKNGLYLHNNPL 201 (361)
T ss_dssp CC-CCHHHHHHS-CHHHHTTEECCSSCE
T ss_pred Cc-cCHHHhhhc-cHhhcceEEecCCCc
Confidence 32 333455555 44 35666666654
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.5e-15 Score=150.70 Aligned_cols=185 Identities=18% Similarity=0.106 Sum_probs=111.9
Q ss_pred EEEcCCCcccCC-cCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 20 MVKAGLRLLEFP-GEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 20 ~~~~~~~l~~~~-~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
+..+++.+..++ ..+..+++|++|++++|.+...++ +..+++|+.|++++|. +..++ ..++|++|++++|.
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-----~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL-----VGPSIETLHAANNN 110 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE-----ECTTCCEEECCSSC
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC-----CCCCcCEEECcCCc
Confidence 444455555554 345556666666666666554333 3356666666666664 33332 22566666666666
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcc-cccccc-CCCCCcEEeccCCCCCCcCCcc
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEE-VPEGME-MLENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~-lp~~~~-~l~~L~~L~l~~~~~~~~~~~~ 175 (467)
+..++. ..+++|++|++++|......| .++.+++|++|++++|.++. .|..+. .+++|++|++++|.+..++..
T Consensus 111 l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~- 187 (487)
T 3oja_A 111 ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ- 187 (487)
T ss_dssp CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-
T ss_pred CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-
Confidence 665543 345677777777764444334 56777777777777777765 344444 677777777777777666553
Q ss_pred ccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 176 LPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 176 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
..+++|+.|++++|......+ .+..+ ++|+.|++++|.+.
T Consensus 188 -~~l~~L~~L~Ls~N~l~~~~~--~~~~l-~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 188 -VVFAKLKTLDLSSNKLAFMGP--EFQSA-AGVTWISLRNNKLV 227 (487)
T ss_dssp -CCCTTCCEEECCSSCCCEECG--GGGGG-TTCSEEECTTSCCC
T ss_pred -ccCCCCCEEECCCCCCCCCCH--hHcCC-CCccEEEecCCcCc
Confidence 357777777777776554332 36667 77777777777654
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=6.1e-15 Score=130.69 Aligned_cols=127 Identities=29% Similarity=0.462 Sum_probs=60.0
Q ss_pred CCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhh-hhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEE
Q 012249 63 ILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSS-VSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLD 139 (467)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~ 139 (467)
+++.|++++|. +..++...+..+++|++|++++|.+..++.. +..+++|++|++++|. +..++ .+..+++|++|+
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence 44444444444 3333333334444455555554444444322 2444555555555432 22333 244455555555
Q ss_pred ccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCC
Q 012249 140 LYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 140 l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
+++|.++.++.. +..+++|++|++++|.+..++...+.++++|+.|++++|.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 555555544433 4455555555555555555554444555555555555553
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=4.2e-15 Score=130.50 Aligned_cols=148 Identities=14% Similarity=0.205 Sum_probs=84.6
Q ss_pred CCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCC-chhhhhcCcCCCE
Q 012249 36 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEV-LPSSVSDLTNLRS 114 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~ 114 (467)
.++++++++++++.+..++ .+ ..+++|+.|++++|. +..++. +..+++|++|++++|.+.. .+..+..+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIH-ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCC-CSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCC-CCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3456666666666666555 22 356666666666664 333331 3566666666666666653 4455566666666
Q ss_pred EEcCCCCCCCcCC-CccccCCccEEEccCCc-CccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCC
Q 012249 115 LSLGWCRRLKRVP-SLARLLALQYLDLYDTR-IEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGN 191 (467)
Q Consensus 115 L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 191 (467)
|++++|......+ .+..+++|++|++++|. ++.+| .+..+++|++|++++|.+.+++ . +.++++|+.|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~-l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-G-IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-T-GGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-H-hccCCCCCEEEeeCcc
Confidence 6666653333333 45566666666666664 55554 4566666666666666665554 2 3556666666666553
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=1.8e-14 Score=129.60 Aligned_cols=151 Identities=28% Similarity=0.383 Sum_probs=123.9
Q ss_pred ccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchh-hhhcCcCCCEEEcC
Q 012249 40 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPS-SVSDLTNLRSLSLG 118 (467)
Q Consensus 40 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~ 118 (467)
-+.++.+++.+..+|..+ .++|+.|++++|. +..++...|..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456778788888888764 3788999999987 555544556888999999999999887764 45788999999999
Q ss_pred CCCCCCcCC--CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCccc
Q 012249 119 WCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 119 ~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (467)
+| .+..++ .+..+.+|++|++++|.++.+|..+..+++|++|++++|.+..++...+..+++|+.|++.+|.....
T Consensus 97 ~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CC-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 87 455555 47889999999999999999998899999999999999999988887678999999999999866543
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=5.8e-15 Score=139.46 Aligned_cols=191 Identities=18% Similarity=0.149 Sum_probs=154.3
Q ss_pred eEEEcCCCcc-cCCcCc--cCCCCccEEEeecCCCcccCCCccCCC-----CCCCEEEccCCCCCCCCchhHhhcCCCCc
Q 012249 19 FMVKAGLRLL-EFPGEQ--EWEENLERVSLMRNNIEEIPSNMSPHC-----EILSTLLLQRNENLQRIPECFFVHMHGLK 90 (467)
Q Consensus 19 ~~~~~~~~l~-~~~~~~--~~l~~l~~L~l~~~~~~~l~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 90 (467)
.+..+++++. .+|..+ ..+++|++|++++|.+...|.. +..+ ++|+.|++++|. +..++...++.+++|+
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALS 176 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCC
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCC
Confidence 4666677776 577766 8899999999999999877543 3344 899999999998 5666655568999999
Q ss_pred EEEccCCCCCC---chhhh--hcCcCCCEEEcCCCCCCCcCC----C-ccccCCccEEEccCCcCcccc--ccccCCCCC
Q 012249 91 VVNLSSTDIEV---LPSSV--SDLTNLRSLSLGWCRRLKRVP----S-LARLLALQYLDLYDTRIEEVP--EGMEMLENL 158 (467)
Q Consensus 91 ~L~l~~~~~~~---l~~~~--~~l~~L~~L~l~~~~~~~~~p----~-l~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L 158 (467)
+|++++|.+.. ++..+ ..+++|++|++++|. +..++ . +..+++|++|++++|.++..+ ..+..+++|
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 99999999763 35555 889999999999974 55333 2 457899999999999998755 346678999
Q ss_pred cEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 159 SHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 159 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
++|++++|.++.+|..+ . ++|+.|++++|..... + .+..+ ++|+.|++++|.+.
T Consensus 256 ~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~-p--~~~~l-~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 256 NSLNLSFTGLKQVPKGL-P--AKLSVLDLSYNRLDRN-P--SPDEL-PQVGNLSLKGNPFL 309 (312)
T ss_dssp CEEECTTSCCSSCCSSC-C--SEEEEEECCSSCCCSC-C--CTTTS-CEEEEEECTTCTTT
T ss_pred CEEECCCCccChhhhhc-c--CCceEEECCCCCCCCC-h--hHhhC-CCCCEEeccCCCCC
Confidence 99999999999999876 3 8999999999977655 2 27888 99999999988764
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=5e-15 Score=142.25 Aligned_cols=104 Identities=22% Similarity=0.314 Sum_probs=45.7
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCC-Cchh-hhhcCcCCCEEEcC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE-VLPS-SVSDLTNLRSLSLG 118 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~-~~~~l~~L~~L~l~ 118 (467)
+.++-+++.++++|..+ .++++.|++++|. +..+|...|.++++|++|++++|.+. .++. .+.++++++.+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34444555555555443 2345555555554 44455444455555555555555543 2322 23344444433222
Q ss_pred CCCCCCcCC--CccccCCccEEEccCCcCccc
Q 012249 119 WCRRLKRVP--SLARLLALQYLDLYDTRIEEV 148 (467)
Q Consensus 119 ~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~l 148 (467)
++..+..++ .+..+++|++|++++|.++.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred cCCcccccCchhhhhccccccccccccccccC
Confidence 222333332 234444444444444444433
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=129.60 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=123.4
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCC-chhHhhcCCCCcEEEccCCCCCCchh-hhhcCcCCCEEEcC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRI-PECFFVHMHGLKVVNLSSTDIEVLPS-SVSDLTNLRSLSLG 118 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~ 118 (467)
+.++++++.++.+|..+ .+.++.|++++|. +..+ +...|..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888888888754 3467889999987 4444 44556889999999999999887654 68889999999999
Q ss_pred CCCCCCcCC--CccccCCccEEEccCCcCccc-cccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCccc
Q 012249 119 WCRRLKRVP--SLARLLALQYLDLYDTRIEEV-PEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 119 ~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (467)
+|. +..++ .+..+++|++|++++|.++.+ |..+..+++|++|++++|.+..++...+..+++|+.|++++|.....
T Consensus 90 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 974 45444 488899999999999988877 55688999999999999999888665568899999999999876555
Q ss_pred ccHHHH
Q 012249 196 ETVEEA 201 (467)
Q Consensus 196 ~~~~~l 201 (467)
..+..+
T Consensus 169 c~l~~l 174 (220)
T 2v70_A 169 CYLAWL 174 (220)
T ss_dssp GGGHHH
T ss_pred CchHHH
Confidence 443333
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=6e-15 Score=139.24 Aligned_cols=153 Identities=24% Similarity=0.193 Sum_probs=64.8
Q ss_pred CccEEEeecCCCcc-cCCCcc-CCCCCCCEEEccCCCCCCCCc---hhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCC
Q 012249 39 NLERVSLMRNNIEE-IPSNMS-PHCEILSTLLLQRNENLQRIP---ECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNL 112 (467)
Q Consensus 39 ~l~~L~l~~~~~~~-l~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L 112 (467)
+|++|++++|.+.. .+..++ ..+++|+.|++++|.+....+ ...+..+++|++|++++|.+..++ ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35555555554442 222211 344555555555554322211 111124455555555555554332 334445555
Q ss_pred CEEEcCCCCCCCc--CC---CccccCCccEEEccCCcCcccccc----ccCCCCCcEEeccCCCCCCc-CCccccCC---
Q 012249 113 RSLSLGWCRRLKR--VP---SLARLLALQYLDLYDTRIEEVPEG----MEMLENLSHLYLSSLQLKKF-PAGILPRL--- 179 (467)
Q Consensus 113 ~~L~l~~~~~~~~--~p---~l~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~~~~~~-~~~~l~~l--- 179 (467)
++|++++|...+. ++ .++.+++|++|++++|.++.++.. ++.+++|++|++++|.+... |..+ ..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCc
Confidence 5555555432221 11 123444555555555544433321 23445555555555554433 3222 222
Q ss_pred CCCcEEEcccCCC
Q 012249 180 RSLYKLKLSFGNE 192 (467)
Q Consensus 180 ~~L~~L~l~~~~~ 192 (467)
++|++|++++|..
T Consensus 251 ~~L~~L~Ls~N~l 263 (310)
T 4glp_A 251 SALNSLNLSFAGL 263 (310)
T ss_dssp TTCCCEECCSSCC
T ss_pred CcCCEEECCCCCC
Confidence 3555555554433
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1.7e-16 Score=154.70 Aligned_cols=196 Identities=15% Similarity=0.031 Sum_probs=138.8
Q ss_pred cCCCcccCCcCccCCCCccEEEeecCCCcccCC----CccCCCCCCCEEEccCCCC---CCCCchhH------hhcCCCC
Q 012249 23 AGLRLLEFPGEQEWEENLERVSLMRNNIEEIPS----NMSPHCEILSTLLLQRNEN---LQRIPECF------FVHMHGL 89 (467)
Q Consensus 23 ~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~----~~~~~l~~L~~L~l~~~~~---~~~~~~~~------~~~l~~L 89 (467)
....+..++..+..+++|++|++++|.+..... ..+..+++|+.|++++|.. ...+|..+ +..+++|
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 344556667777778899999999998773211 1234789999999998742 12344433 3688999
Q ss_pred cEEEccCCCCCC-----chhhhhcCcCCCEEEcCCCCCCCcCC-----Ccccc---------CCccEEEccCCcCc--cc
Q 012249 90 KVVNLSSTDIEV-----LPSSVSDLTNLRSLSLGWCRRLKRVP-----SLARL---------LALQYLDLYDTRIE--EV 148 (467)
Q Consensus 90 ~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~p-----~l~~l---------~~L~~L~l~~~~~~--~l 148 (467)
++|++++|.+.. ++..+..+++|++|++++|......+ .+..+ ++|++|++++|.++ .+
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 999999998885 67788899999999999975322212 24444 89999999999886 44
Q ss_pred c---ccccCCCCCcEEeccCCCCCC-----cCCccccCCCCCcEEEcccCCCccc---ccHHHHHhhhccCcEEEcccCC
Q 012249 149 P---EGMEMLENLSHLYLSSLQLKK-----FPAGILPRLRSLYKLKLSFGNEALR---ETVEEAARLSDRLDYFEGYFST 217 (467)
Q Consensus 149 p---~~~~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~~L~~L~l~~~~ 217 (467)
+ ..+..+++|++|++++|.+.. +....+.++++|+.|++++|..... .-...+..+ ++|+.|++++|.
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-~~L~~L~L~~n~ 255 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-TTCCEEECTTCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC-CCcCEEECCCCC
Confidence 4 457788899999999998862 2221247889999999998865321 112356677 888999888876
Q ss_pred cc
Q 012249 218 LK 219 (467)
Q Consensus 218 ~~ 219 (467)
+.
T Consensus 256 i~ 257 (386)
T 2ca6_A 256 LS 257 (386)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=9.9e-16 Score=146.33 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=108.4
Q ss_pred CCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCC-CchhHhhcCCCCcEEEccCCCCC-CchhhhhcCcCCCEE
Q 012249 38 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQR-IPECFFVHMHGLKVVNLSSTDIE-VLPSSVSDLTNLRSL 115 (467)
Q Consensus 38 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L 115 (467)
++++.++++++.+...+...+ .+++|+.|++++|.+... ++ ..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 567777777776665544444 567777777777763222 33 33466777777777777666 455666667777777
Q ss_pred EcCCCCCCCc--CC-CccccCCccEEEccCC-cCcc--ccccccCCC-CCcEEeccCCC--C--CCcCCccccCCCCCcE
Q 012249 116 SLGWCRRLKR--VP-SLARLLALQYLDLYDT-RIEE--VPEGMEMLE-NLSHLYLSSLQ--L--KKFPAGILPRLRSLYK 184 (467)
Q Consensus 116 ~l~~~~~~~~--~p-~l~~l~~L~~L~l~~~-~~~~--lp~~~~~l~-~L~~L~l~~~~--~--~~~~~~~l~~l~~L~~ 184 (467)
++++|..++. ++ .+..+++|++|++++| .++. ++..+..++ +|++|++++|. + ..++.. +.++++|+.
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCE
Confidence 7777644443 33 3666777777777777 6663 455566677 77777777763 3 223333 356677777
Q ss_pred EEcccCCCcccccHHHHHhhhccCcEEEcccCC
Q 012249 185 LKLSFGNEALRETVEEAARLSDRLDYFEGYFST 217 (467)
Q Consensus 185 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 217 (467)
|++++|.......+..++.+ ++|+.|++++|.
T Consensus 227 L~l~~~~~l~~~~~~~l~~l-~~L~~L~l~~~~ 258 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCY 258 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGC-TTCCEEECTTCT
T ss_pred EeCCCCCcCCHHHHHHHhCC-CCCCEeeCCCCC
Confidence 77777653333333456666 777777776664
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=2.8e-14 Score=128.39 Aligned_cols=146 Identities=25% Similarity=0.380 Sum_probs=128.2
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...+.++..+|..+. +++++|++++|.+..++...+..+++|+.|++++|. +..++...|..+++|++|++++|.+
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC
Confidence 5556778889998664 699999999999998877777799999999999998 6788877789999999999999999
Q ss_pred CCchhh-hhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCC
Q 012249 100 EVLPSS-VSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLK 169 (467)
Q Consensus 100 ~~l~~~-~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 169 (467)
..++.. +..+++|++|++++| .+..+| .+..+.+|++|++++|.++.+|. .+..+++|+.|++++|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 988654 678999999999997 566888 79999999999999999998885 4889999999999999864
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=2.1e-14 Score=128.32 Aligned_cols=151 Identities=26% Similarity=0.389 Sum_probs=111.3
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCc-hhhhhcCcCCCEEEcCC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVL-PSSVSDLTNLRSLSLGW 119 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 119 (467)
+.++.+++.++.+|..+. ++++.|++++|. +..++...|..+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 456666667777766532 567777777776 5556655567777788888888877755 56677788888888887
Q ss_pred CCCCCcCC--CccccCCccEEEccCCcCcccc-ccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccc
Q 012249 120 CRRLKRVP--SLARLLALQYLDLYDTRIEEVP-EGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRE 196 (467)
Q Consensus 120 ~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 196 (467)
| .+..+| .+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++...+..+++|+.|++++|......
T Consensus 90 N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 90 N-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred C-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 5 455555 3677888888888888888764 45788888999999988888888776688889999999988654443
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=2.4e-14 Score=127.86 Aligned_cols=147 Identities=22% Similarity=0.318 Sum_probs=105.6
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...+.++..+|..+. ++++.|++++|.+..++...+..+++|+.|++++|. +..+++..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc
Confidence 34555667777776554 577888888888877776666677888888888887 445544445778888888888888
Q ss_pred CCCchhh-hhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCC
Q 012249 99 IEVLPSS-VSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQL 168 (467)
Q Consensus 99 ~~~l~~~-~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 168 (467)
+..+|.. +..+++|++|++++|......| .+..+++|++|++++|.++.++.. +..+++|+.|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8877654 4678888888888864333334 577788888888888887777654 77788888888887765
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=9.3e-15 Score=149.70 Aligned_cols=173 Identities=24% Similarity=0.290 Sum_probs=146.5
Q ss_pred ccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCC
Q 012249 34 QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLR 113 (467)
Q Consensus 34 ~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~ 113 (467)
...+++|+.|+++++.+..++. +..+++|+.|++++|. +..+++ +..+++|++|++++|.+..++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 3457789999999999988764 3479999999999998 555665 589999999999999998876 688999999
Q ss_pred EEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCc
Q 012249 114 SLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEA 193 (467)
Q Consensus 114 ~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 193 (467)
+|++++| .+..++.+..+++|+.|++++|.++.+ ..++.+++|+.|++++|.+..++. +..+++|+.|++++|.+.
T Consensus 113 ~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 113 SLSLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EEECTTS-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEEecCC-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 9999997 566677899999999999999999888 578899999999999999988776 589999999999999665
Q ss_pred ccccHHHHHhhhccCcEEEcccCCccc
Q 012249 194 LRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 194 ~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
.. ..+..+ ++|+.|+++.|.+..
T Consensus 189 ~l---~~l~~l-~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 189 DL---RALAGL-KNLDVLELFSQECLN 211 (605)
T ss_dssp BC---GGGTTC-TTCSEEECCSEEEEC
T ss_pred CC---hHHccC-CCCCEEEccCCcCcC
Confidence 53 457888 999999998886643
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=4.2e-16 Score=160.81 Aligned_cols=129 Identities=17% Similarity=0.190 Sum_probs=59.2
Q ss_pred hcCCCCcEEEccCCCCC-Cchhhhh-cCcCCCEEEcCCCCCCCc--CCC-ccccCCccEEEccCCcCcc-----cccccc
Q 012249 84 VHMHGLKVVNLSSTDIE-VLPSSVS-DLTNLRSLSLGWCRRLKR--VPS-LARLLALQYLDLYDTRIEE-----VPEGME 153 (467)
Q Consensus 84 ~~l~~L~~L~l~~~~~~-~l~~~~~-~l~~L~~L~l~~~~~~~~--~p~-l~~l~~L~~L~l~~~~~~~-----lp~~~~ 153 (467)
..+++|++|++++|.+. ..+..+. .+++|++|++.+|..++. ++. ..++++|++|++++|.++. ++....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 44555666666555544 2222332 455566666655543333 222 2345556666665554332 222223
Q ss_pred CCCCCcEEeccCCCCCCcCC----ccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEccc
Q 012249 154 MLENLSHLYLSSLQLKKFPA----GILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYF 215 (467)
Q Consensus 154 ~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 215 (467)
.+++|+.|++++|. ..+.. .+..++++|+.|++++|..... ....+..+ ++|+.|.+..
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~-~~L~~L~l~~ 244 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRA-PQLEELGTGG 244 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHC-TTCSEEECSB
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcC-CcceEccccc
Confidence 45566666665554 11111 1113455666666655522222 11334444 5666665543
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.8e-14 Score=132.38 Aligned_cols=165 Identities=21% Similarity=0.248 Sum_probs=87.6
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcC
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLG 118 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 118 (467)
++..+++..+.+++++. +..+++|+.|++++|. +..++ . +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~-i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN-IQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTSC-CCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccccc--hhhcCcCcEEECcCCC-cccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 34444445555554431 2245556666666554 34444 1 3555666666666665555544 5556666666666
Q ss_pred CCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccH
Q 012249 119 WCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETV 198 (467)
Q Consensus 119 ~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 198 (467)
+| .++.+|.+.. .+|++|++++|.++.++ .+..+++|++|++++|.+.+++. ++.+++|+.|++++|.....
T Consensus 94 ~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i~~~--- 165 (263)
T 1xeu_A 94 RN-RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT--- 165 (263)
T ss_dssp SS-CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG--GGGCTTCCEEECTTSCCCBC---
T ss_pred CC-ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH--HccCCCCCEEECCCCcCcch---
Confidence 54 3444443333 55666666666555553 35556666666666666555542 35566666666666544333
Q ss_pred HHHHhhhccCcEEEcccCCc
Q 012249 199 EEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 199 ~~l~~l~~~L~~L~l~~~~~ 218 (467)
..+..+ ++|+.|+++++..
T Consensus 166 ~~l~~l-~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 GGLTRL-KKVNWIDLTGQKC 184 (263)
T ss_dssp TTSTTC-CCCCEEEEEEEEE
T ss_pred HHhccC-CCCCEEeCCCCcc
Confidence 334555 5666666655543
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=2.8e-14 Score=125.19 Aligned_cols=147 Identities=14% Similarity=0.245 Sum_probs=124.0
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...++.+..+| .+..+++|++|++++|.+..++ . +..+++|+.|++++|.+....+.. +..+++|++|++++|.
T Consensus 48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 48 YITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-P-ISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSA 123 (197)
T ss_dssp EEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-G-GTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSB
T ss_pred EEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-h-hhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCc
Confidence 4566778888888 6889999999999999887664 3 448999999999999854434444 4899999999999999
Q ss_pred CCC-chhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCC
Q 012249 99 IEV-LPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKK 170 (467)
Q Consensus 99 ~~~-l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 170 (467)
+.. .+..+..+++|++|++++|..++.+|.+..+++|++|++++|.++.++ .+..+++|++|++++|++.+
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 984 678899999999999999866888888999999999999999999887 78999999999999998753
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=4.4e-14 Score=126.17 Aligned_cols=148 Identities=22% Similarity=0.279 Sum_probs=125.6
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCccc-CCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEI-PSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+..+++.+..+|..+. +.+++|++++|.++.+ +...+..+++|+.|++++|. +..++...|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC
Confidence 45667788889998664 3678999999999977 44556789999999999998 66777666799999999999999
Q ss_pred CCCCch-hhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccc-cccccCCCCCcEEeccCCCCC
Q 012249 98 DIEVLP-SSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEV-PEGMEMLENLSHLYLSSLQLK 169 (467)
Q Consensus 98 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~ 169 (467)
.+..++ ..+..+++|++|++++|......| .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999775 457899999999999975544445 689999999999999999987 667999999999999999863
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.6e-13 Score=121.45 Aligned_cols=165 Identities=22% Similarity=0.361 Sum_probs=132.7
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...+..+..+|..+ .+++++|++++|.++.++...+..+++|+.|++++|. +..++...|..+++|++|++++|.+
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcC
Confidence 445566777888655 3589999999999998888777789999999999997 6677777778999999999999999
Q ss_pred CCchhh-hhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCcc
Q 012249 100 EVLPSS-VSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGI 175 (467)
Q Consensus 100 ~~l~~~-~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~ 175 (467)
..++.. +..+++|++|++++| .+..++ .+..+++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 977654 688999999999997 455555 478999999999999999888765 788999999999998653
Q ss_pred ccCCCCCcEEEcccCCCccc
Q 012249 176 LPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 176 l~~l~~L~~L~l~~~~~~~~ 195 (467)
+.+++|+.|+++.+...+.
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTT
T ss_pred -cCCCCHHHHHHHHHhCCce
Confidence 4566677777766644433
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=5.4e-14 Score=135.59 Aligned_cols=174 Identities=26% Similarity=0.279 Sum_probs=146.6
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccC-CCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSP-HCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSST 97 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (467)
.+...+.++..+|..+. +.++.|++++|.++.++...+. .+++|+.|++++|. +..++...|..+++|++|++++|
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC
Confidence 46677788999998654 3689999999999998888776 89999999999998 67777666799999999999999
Q ss_pred CCCCchh-hhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccc----cCCCCCcEEeccCCCCCCc
Q 012249 98 DIEVLPS-SVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGM----EMLENLSHLYLSSLQLKKF 171 (467)
Q Consensus 98 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~ 171 (467)
.+..++. .+..+++|++|++++|......| .+..+++|++|++++|.++.+|..+ ..+++|++|++++|.+..+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9997764 57899999999999975444445 6999999999999999999998764 6799999999999999999
Q ss_pred CCccccCCCC--CcEEEcccCCCccc
Q 012249 172 PAGILPRLRS--LYKLKLSFGNEALR 195 (467)
Q Consensus 172 ~~~~l~~l~~--L~~L~l~~~~~~~~ 195 (467)
+...+..++. ++.|++.+|...-.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CHHHhhhccHhhcceEEecCCCccCC
Confidence 8766677776 48899999866544
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=7.6e-14 Score=142.96 Aligned_cols=164 Identities=23% Similarity=0.343 Sum_probs=141.1
Q ss_pred EEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC
Q 012249 20 MVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI 99 (467)
Q Consensus 20 ~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 99 (467)
+...++.+..++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+
T Consensus 48 L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 48 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLSS--LKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp CBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCTT--STTCTTCCEEECTTSCC
T ss_pred EECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCChh--hccCCCCCEEEecCCCC
Confidence 345566677776 58889999999999999998776 4589999999999998 555653 58999999999999999
Q ss_pred CCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCC
Q 012249 100 EVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRL 179 (467)
Q Consensus 100 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 179 (467)
..++ .+..+++|+.|++++| .+..++.+..+++|+.|++++|.+..++. +..+++|+.|++++|.+..++. +..+
T Consensus 122 ~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l 196 (605)
T 1m9s_A 122 SDIN-GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGL 196 (605)
T ss_dssp CCCG-GGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred CCCc-cccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH--HccC
Confidence 9875 5899999999999997 56666789999999999999999998866 9999999999999999988864 5899
Q ss_pred CCCcEEEcccCCCcc
Q 012249 180 RSLYKLKLSFGNEAL 194 (467)
Q Consensus 180 ~~L~~L~l~~~~~~~ 194 (467)
++|+.|++++|.+..
T Consensus 197 ~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 197 KNLDVLELFSQECLN 211 (605)
T ss_dssp TTCSEEECCSEEEEC
T ss_pred CCCCEEEccCCcCcC
Confidence 999999999985543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=7.9e-15 Score=134.84 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=134.2
Q ss_pred CCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchh
Q 012249 25 LRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPS 104 (467)
Q Consensus 25 ~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 104 (467)
+.+..++ .+..+++|++|++++|.+..++ . +..+++|+.|++++|. +..++. +..+++|++|++++|.+..++.
T Consensus 29 ~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~~l~~ 102 (263)
T 1xeu_A 29 QSVTDLV-SQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLKNLNG 102 (263)
T ss_dssp SCTTSEE-CHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCSCCTT
T ss_pred CCccccc-chhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccCCcCc
Confidence 3444555 4677889999999999999887 3 3489999999999998 666766 6899999999999999998875
Q ss_pred hhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcE
Q 012249 105 SVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYK 184 (467)
Q Consensus 105 ~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 184 (467)
... ++|++|++++| .++.++.+..+++|++|++++|.++.++ .++.+++|++|++++|.+..++ . +..+++|+.
T Consensus 103 ~~~--~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~ 176 (263)
T 1xeu_A 103 IPS--ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTG-G-LTRLKKVNW 176 (263)
T ss_dssp CCC--SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCT-T-STTCCCCCE
T ss_pred ccc--CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchH-H-hccCCCCCE
Confidence 333 99999999997 6677788999999999999999999886 7899999999999999998873 3 589999999
Q ss_pred EEcccCCCcc
Q 012249 185 LKLSFGNEAL 194 (467)
Q Consensus 185 L~l~~~~~~~ 194 (467)
|++++|....
T Consensus 177 L~l~~N~~~~ 186 (263)
T 1xeu_A 177 IDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEC
T ss_pred EeCCCCcccC
Confidence 9999985533
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=3.3e-15 Score=144.29 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=117.5
Q ss_pred CCCCccEEEeecCCCcccCC----CccCCCC-CCCEEEccCCCCCCCCchhHhhcC-----CCCcEEEccCCCCCCc-hh
Q 012249 36 WEENLERVSLMRNNIEEIPS----NMSPHCE-ILSTLLLQRNENLQRIPECFFVHM-----HGLKVVNLSSTDIEVL-PS 104 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~~l~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~l-~~ 104 (467)
..++|++|++++|.++..+. ..+..++ +|+.|++++|.+ .......+..+ ++|++|++++|.+... +.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 34458888888888876654 3444677 888888888873 33332223343 8888888888887733 33
Q ss_pred h----hhcC-cCCCEEEcCCCCCCCcCC--C----ccc-cCCccEEEccCCcCc-----cccccccCCC-CCcEEeccCC
Q 012249 105 S----VSDL-TNLRSLSLGWCRRLKRVP--S----LAR-LLALQYLDLYDTRIE-----EVPEGMEMLE-NLSHLYLSSL 166 (467)
Q Consensus 105 ~----~~~l-~~L~~L~l~~~~~~~~~p--~----l~~-l~~L~~L~l~~~~~~-----~lp~~~~~l~-~L~~L~l~~~ 166 (467)
. +..+ ++|++|++++|. ++..+ . +.. ..+|++|++++|.++ .++..+..++ +|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 2 3444 788888888874 44444 2 233 358888888888777 4444556665 8888888888
Q ss_pred CCCCcCCc----cccCC-CCCcEEEcccCCCccccc---HHHHHhhhccCcEEEcccCCcc
Q 012249 167 QLKKFPAG----ILPRL-RSLYKLKLSFGNEALRET---VEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 167 ~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
.+...... .+..+ ++|++|++++|....... ...+...+++|+.|++++|.+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 87655432 12444 588888888886543211 1234443257888888777653
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=3.6e-14 Score=133.92 Aligned_cols=193 Identities=16% Similarity=0.081 Sum_probs=150.9
Q ss_pred ceEEEcCCCcc-cCCcCc--cCCCCccEEEeecCCCcccCC----CccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCc
Q 012249 18 LFMVKAGLRLL-EFPGEQ--EWEENLERVSLMRNNIEEIPS----NMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLK 90 (467)
Q Consensus 18 ~~~~~~~~~l~-~~~~~~--~~l~~l~~L~l~~~~~~~l~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 90 (467)
..+...++.+. ..|..+ ..+++|++|++++|.+..... ..+..+++|+.|++++|. +..++...++.+++|+
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALT 172 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCC
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCC
Confidence 34566666665 455555 789999999999999874222 122368999999999998 5666655668999999
Q ss_pred EEEccCCCCCC---chh--hhhcCcCCCEEEcCCCCCCCcCCC-----ccccCCccEEEccCCcCccc-cccccCC---C
Q 012249 91 VVNLSSTDIEV---LPS--SVSDLTNLRSLSLGWCRRLKRVPS-----LARLLALQYLDLYDTRIEEV-PEGMEML---E 156 (467)
Q Consensus 91 ~L~l~~~~~~~---l~~--~~~~l~~L~~L~l~~~~~~~~~p~-----l~~l~~L~~L~l~~~~~~~l-p~~~~~l---~ 156 (467)
+|++++|.+.. ++. .++.+++|++|++++| .++.++. +..+++|++|++++|.++.. |..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 99999998763 332 2368999999999997 4555442 46889999999999999976 7777666 6
Q ss_pred CCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCcc
Q 012249 157 NLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 157 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
+|++|++++|.+..+|..+ . ++|++|++++|...... .+..+ ++|+.|++++|.+.
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~---~~~~l-~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAP---QPDEL-PEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCC---CTTSC-CCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCc---hhhhC-CCccEEECcCCCCC
Confidence 9999999999999998876 2 79999999999776532 25778 99999999988764
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=2e-13 Score=138.35 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=143.4
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+...++++..+|..+. ++|++|++++|.++.+| . .+++|+.|++++|. +..+|. + .. +|++|++++|.
T Consensus 63 ~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~-l~~ip~-l-~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E---LPASLEYLDACDNR-LSTLPE-L-PA--SLKHLDVDNNQ 131 (571)
T ss_dssp EEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSC-CSCCCC-C-CT--TCCEEECCSSC
T ss_pred EEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c---ccCCCCEEEccCCC-CCCcch-h-hc--CCCEEECCCCc
Confidence 46677888888988663 78999999999999888 2 57899999999998 555776 3 44 99999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccC
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPR 178 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 178 (467)
+..+|. .+++|++|++++| .++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|.+..+|. + ..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~-~~ 200 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V-PV 200 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C-C-
T ss_pred CCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H-HH
Confidence 998887 7899999999997 4566776 67899999999999999988 65 899999999999998888 4 43
Q ss_pred CCCC-------cEEEcccCCCcccccHHHHHhhhccCcEEEcccCCccc
Q 012249 179 LRSL-------YKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTLKD 220 (467)
Q Consensus 179 l~~L-------~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 220 (467)
+| +.|++++|.+... + ..+..+ ++|+.|++++|.+..
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~l-p-~~l~~l-~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHI-P-ENILSL-DPTCTIILEDNPLSS 244 (571)
T ss_dssp ---------CCEEEECCSSCCCCC-C-GGGGGS-CTTEEEECCSSSCCH
T ss_pred --hhhcccccceEEecCCCcceec-C-HHHhcC-CCCCEEEeeCCcCCC
Confidence 66 9999999977543 2 356678 999999999998754
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=7.5e-15 Score=143.08 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=91.8
Q ss_pred CCCCCCEEEccCCCCCCCCchh---HhhcCCCCcEEEccCCCCC----Cchhhh-------hcCcCCCEEEcCCCCCCC-
Q 012249 60 HCEILSTLLLQRNENLQRIPEC---FFVHMHGLKVVNLSSTDIE----VLPSSV-------SDLTNLRSLSLGWCRRLK- 124 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~----~l~~~~-------~~l~~L~~L~l~~~~~~~- 124 (467)
.+++|+.|++++|.+....+.. .+..+++|++|++++|.+. .+|..+ ..+++|++|++++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 5777888888887632222211 2356778888888877554 234433 567788888887764333
Q ss_pred ---cCC-CccccCCccEEEccCCcCcc-----ccccccCC---------CCCcEEeccCCCCC--CcCC--ccccCCCCC
Q 012249 125 ---RVP-SLARLLALQYLDLYDTRIEE-----VPEGMEML---------ENLSHLYLSSLQLK--KFPA--GILPRLRSL 182 (467)
Q Consensus 125 ---~~p-~l~~l~~L~~L~l~~~~~~~-----lp~~~~~l---------~~L~~L~l~~~~~~--~~~~--~~l~~l~~L 182 (467)
.+| .+..+++|++|++++|.++. ++..+..+ ++|++|++++|.+. .++. ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 133 46677777777777776652 22233333 67777777777764 2331 113466677
Q ss_pred cEEEcccCCCcccc---cHH-HHHhhhccCcEEEcccCCc
Q 012249 183 YKLKLSFGNEALRE---TVE-EAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 183 ~~L~l~~~~~~~~~---~~~-~l~~l~~~L~~L~l~~~~~ 218 (467)
++|++++|...... ... .+..+ ++|+.|+++.|.+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTF 228 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCC
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCC
Confidence 77777766443211 111 33445 6666666666654
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=6.1e-14 Score=135.33 Aligned_cols=173 Identities=17% Similarity=0.139 Sum_probs=106.4
Q ss_pred EEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCch----hHhhcCC-CCcEEEccCCCCCCc-hhhhhcC-----cC
Q 012249 43 VSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPE----CFFVHMH-GLKVVNLSSTDIEVL-PSSVSDL-----TN 111 (467)
Q Consensus 43 L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-~~~~~~l-----~~ 111 (467)
+.++.+.++..........++|+.|++++|. +...+. ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4566666664433444345568888888887 555543 4456777 788888888887743 4445443 88
Q ss_pred CCEEEcCCCCCCCcCC--C----cccc-CCccEEEccCCcCccccc-----cccC-CCCCcEEeccCCCCCCcC-----C
Q 012249 112 LRSLSLGWCRRLKRVP--S----LARL-LALQYLDLYDTRIEEVPE-----GMEM-LENLSHLYLSSLQLKKFP-----A 173 (467)
Q Consensus 112 L~~L~l~~~~~~~~~p--~----l~~l-~~L~~L~l~~~~~~~lp~-----~~~~-l~~L~~L~l~~~~~~~~~-----~ 173 (467)
|++|++++|. ++..+ . +..+ ++|++|++++|.++..+. .+.. .++|++|++++|.+.... .
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8888888874 44333 2 3334 778888888887775443 1333 357888888888775322 2
Q ss_pred ccccCCC-CCcEEEcccCCCcccccH---HHHHhhhccCcEEEcccCCc
Q 012249 174 GILPRLR-SLYKLKLSFGNEALRETV---EEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 174 ~~l~~l~-~L~~L~l~~~~~~~~~~~---~~l~~l~~~L~~L~l~~~~~ 218 (467)
. +..++ +|++|++++|........ ..+...+++|+.|+++.|.+
T Consensus 161 ~-l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 161 I-LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp H-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred H-HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 2 23444 788888887755433221 12333313777777777754
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=1.2e-12 Score=132.73 Aligned_cols=163 Identities=21% Similarity=0.290 Sum_probs=135.1
Q ss_pred eEEEcCCCcccCCcCccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 19 FMVKAGLRLLEFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
.+..+++.+..+| ..+++|+.|++++|.++.+|. +. . +|+.|++++|. +..+|. .+++|++|++++|.
T Consensus 84 ~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~-~--~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 84 VLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LP-A--SLKHLDVDNNQ-LTMLPE----LPALLEYINADNNQ 151 (571)
T ss_dssp EEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CC-T--TCCEEECCSSC-CSCCCC----CCTTCCEEECCSSC
T ss_pred EEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hh-c--CCCEEECCCCc-CCCCCC----cCccccEEeCCCCc
Confidence 4566778888888 457899999999999998887 43 3 99999999998 555776 68999999999999
Q ss_pred CCCchhhhhcCcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCC-------cEEeccCCCCCCc
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENL-------SHLYLSSLQLKKF 171 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L-------~~L~l~~~~~~~~ 171 (467)
+..+|. .+++|++|++++| .++.+|.+. .+|++|++++|.++.+|. +.. +| +.|++++|.+..+
T Consensus 152 l~~lp~---~l~~L~~L~Ls~N-~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l 222 (571)
T 3cvr_A 152 LTMLPE---LPTSLEVLSVRNN-QLTFLPELP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHI 222 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCCCC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCC
T ss_pred cCcCCC---cCCCcCEEECCCC-CCCCcchhh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceec
Confidence 998886 6789999999997 466677644 899999999999999988 654 77 9999999999999
Q ss_pred CCccccCCCCCcEEEcccCCCcccccHHHHHhh
Q 012249 172 PAGILPRLRSLYKLKLSFGNEALRETVEEAARL 204 (467)
Q Consensus 172 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 204 (467)
|..+ .++++|+.|++++|...+.. ...+..+
T Consensus 223 p~~l-~~l~~L~~L~L~~N~l~~~~-p~~l~~l 253 (571)
T 3cvr_A 223 PENI-LSLDPTCTIILEDNPLSSRI-RESLSQQ 253 (571)
T ss_dssp CGGG-GGSCTTEEEECCSSSCCHHH-HHHHHHH
T ss_pred CHHH-hcCCCCCEEEeeCCcCCCcC-HHHHHHh
Confidence 9987 56999999999999776543 3566665
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=4.2e-13 Score=114.39 Aligned_cols=131 Identities=22% Similarity=0.246 Sum_probs=84.6
Q ss_pred CCccEEEeecCCCc--ccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCC-chhhhhcCcCCCE
Q 012249 38 ENLERVSLMRNNIE--EIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEV-LPSSVSDLTNLRS 114 (467)
Q Consensus 38 ~~l~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~ 114 (467)
+++++|++++|.+. .++.. +..+++|+.|++++|. +..+ ..+..+++|++|++++|.+.. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 46777777777776 56554 3367777777777776 3344 224667777777777777775 5555566777777
Q ss_pred EEcCCCCCCCcCC---CccccCCccEEEccCCcCccccc----cccCCCCCcEEeccCCCCCCcCC
Q 012249 115 LSLGWCRRLKRVP---SLARLLALQYLDLYDTRIEEVPE----GMEMLENLSHLYLSSLQLKKFPA 173 (467)
Q Consensus 115 L~l~~~~~~~~~p---~l~~l~~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~~~ 173 (467)
|++++| .+..+| .+..+++|++|++++|.++.+|. .+..+++|++|++++|.+.++|.
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 777775 344432 46666677777777776666654 46666777777776666655554
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.6e-13 Score=114.86 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=97.0
Q ss_pred CCCCCCEEEccCCCCC-CCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccE
Q 012249 60 HCEILSTLLLQRNENL-QRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQY 137 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~ 137 (467)
..++|+.|++++|.+. ..+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.....+| .+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3577888888888743 256654 47788888888888888776 667788888888888875444466 4556888888
Q ss_pred EEccCCcCcccc--ccccCCCCCcEEeccCCCCCCcCC---ccccCCCCCcEEEcccCCC
Q 012249 138 LDLYDTRIEEVP--EGMEMLENLSHLYLSSLQLKKFPA---GILPRLRSLYKLKLSFGNE 192 (467)
Q Consensus 138 L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~ 192 (467)
|++++|.++.+| ..+..+++|++|++++|.+..++. ..+..+++|+.|+++.|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 888888888765 567788888888888888777766 3457777888887777644
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=2.5e-13 Score=142.48 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=100.4
Q ss_pred CCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCC---CCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCC
Q 012249 37 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNEN---LQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLR 113 (467)
Q Consensus 37 l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~ 113 (467)
.++++.+++..+.+...+.... ....|+.+.+..... ...++...+..++.|++|+|++|.+..+|..+..+++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 3568889998888776655544 444455544443221 112445556899999999999999999998899999999
Q ss_pred EEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCC
Q 012249 114 SLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNE 192 (467)
Q Consensus 114 ~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 192 (467)
+|++++| .+..+| .++.+.+|++|++++|.++.+|..++++++|++|++++|.+..+|..+ +++++|+.|++++|.+
T Consensus 251 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~-~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF-GNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSST-TSCTTCCCEECTTSCC
T ss_pred EEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhh-hcCCCccEEeCCCCcc
Confidence 9999997 556888 799999999999999999999999999999999999999999999885 9999999999999977
Q ss_pred cccc
Q 012249 193 ALRE 196 (467)
Q Consensus 193 ~~~~ 196 (467)
.+..
T Consensus 329 ~~~~ 332 (727)
T 4b8c_D 329 EKQF 332 (727)
T ss_dssp CSHH
T ss_pred CCCC
Confidence 6543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=2.7e-13 Score=113.16 Aligned_cols=106 Identities=21% Similarity=0.283 Sum_probs=52.3
Q ss_pred CccEEEeecCCCc--ccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCC-chhhhhcCcCCCEE
Q 012249 39 NLERVSLMRNNIE--EIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEV-LPSSVSDLTNLRSL 115 (467)
Q Consensus 39 ~l~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L 115 (467)
+++.|++++|.+. .++.. +..+++|+.|++++|. +..+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 5566666666555 44432 2355566666666554 3333 223455555555555555554 44444445555555
Q ss_pred EcCCCCCCCcCC---CccccCCccEEEccCCcCcccc
Q 012249 116 SLGWCRRLKRVP---SLARLLALQYLDLYDTRIEEVP 149 (467)
Q Consensus 116 ~l~~~~~~~~~p---~l~~l~~L~~L~l~~~~~~~lp 149 (467)
++++|. +...+ .+..+++|++|++++|.++.+|
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 555542 22221 3444444444444444444433
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=3.9e-12 Score=110.92 Aligned_cols=126 Identities=18% Similarity=0.286 Sum_probs=85.9
Q ss_pred CEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccC
Q 012249 65 STLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYD 142 (467)
Q Consensus 65 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~ 142 (467)
+.++++++. +..+|..+ .+.|++|++++|.+..+|..+..+++|++|++++|. +..++ .+..+++|++|++++
T Consensus 13 ~~l~~~~~~-l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSC-CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 345555554 44555432 245666677766666666666667777777777653 33333 467777777777777
Q ss_pred CcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCccc
Q 012249 143 TRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 143 ~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (467)
|.++.++. .+..+++|++|++++|.+..++...+..+++|+.|++++|.....
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 77776654 477888888888888888888877667888888888888765443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=4.8e-12 Score=110.31 Aligned_cols=108 Identities=21% Similarity=0.204 Sum_probs=54.9
Q ss_pred CCcEEEccCCCCCCchh--hhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccccc-ccCCCCCcEEec
Q 012249 88 GLKVVNLSSTDIEVLPS--SVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYL 163 (467)
Q Consensus 88 ~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l 163 (467)
.+++|++++|.+..++. .+..+++|++|++++|......| .+..+.+|++|++++|.++.++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 34444444444443332 13444444444444432222223 344555555555555555544432 556666666666
Q ss_pred cCCCCCCcCCccccCCCCCcEEEcccCCCccc
Q 012249 164 SSLQLKKFPAGILPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 164 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (467)
++|.+..++...+..+++|+.|++++|.....
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 66666555444446666677777766655443
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.4e-13 Score=140.18 Aligned_cols=178 Identities=23% Similarity=0.244 Sum_probs=92.4
Q ss_pred cCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCC-------------CCCCCchhHhhcCCCCcEEE-ccCCCCC
Q 012249 35 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNE-------------NLQRIPECFFVHMHGLKVVN-LSSTDIE 100 (467)
Q Consensus 35 ~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~~ 100 (467)
...++++.|++++|.++.+|..+. +|++|+.|++.+|. .....| ..++.+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCcchhhcccc
Confidence 446678888888888888877665 77888888775542 122222 2234444444444 2322222
Q ss_pred Cchh------hhhc--CcCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcC
Q 012249 101 VLPS------SVSD--LTNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFP 172 (467)
Q Consensus 101 ~l~~------~~~~--l~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~ 172 (467)
.++. .+.. ...|++|++++| .++.+|.++.+++|+.|++++|.++.+|..++++++|+.|++++|.++.+|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc
Confidence 1111 0111 123555555554 344445555555555555555555555555555555555555555555555
Q ss_pred CccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccCCc
Q 012249 173 AGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 173 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 218 (467)
. ++++++|+.|++++|..........++.+ ++|+.|++++|.+
T Consensus 503 -~-l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l-~~L~~L~L~~N~l 545 (567)
T 1dce_A 503 -G-VANLPRLQELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSL 545 (567)
T ss_dssp -G-GTTCSSCCEEECCSSCCCSSSTTGGGGGC-TTCCEEECTTSGG
T ss_pred -c-cCCCCCCcEEECCCCCCCCCCCcHHHhcC-CCCCEEEecCCcC
Confidence 2 25555555555555544333212345555 5555555555544
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=7.2e-12 Score=109.23 Aligned_cols=125 Identities=27% Similarity=0.408 Sum_probs=102.2
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCch-hHhhcCCCCcEEEccCCCCCCc-hhhhhcCcCCCEEEcC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPE-CFFVHMHGLKVVNLSSTDIEVL-PSSVSDLTNLRSLSLG 118 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~ 118 (467)
+.++++++.++++|..+. .+++.|++++|. +..++. .+|..+++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 678888888888887654 389999999997 555554 3568999999999999999866 6788899999999999
Q ss_pred CCCCCCcCC-CccccCCccEEEccCCcCccc-cccccCCCCCcEEeccCCCCC
Q 012249 119 WCRRLKRVP-SLARLLALQYLDLYDTRIEEV-PEGMEMLENLSHLYLSSLQLK 169 (467)
Q Consensus 119 ~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~ 169 (467)
+|......+ .+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 975444444 588999999999999998866 567889999999999999864
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=3.3e-13 Score=141.64 Aligned_cols=117 Identities=25% Similarity=0.368 Sum_probs=99.2
Q ss_pred CCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-Ccccc
Q 012249 54 PSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARL 132 (467)
Q Consensus 54 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l 132 (467)
+...+..+++|+.|++++|. +..+|..++ .+++|++|+|++|.+..+|..++.+++|++|++++|. +..+| .++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSC-CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCC-CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 34445688999999999998 568887774 8999999999999999999999999999999999975 56788 79999
Q ss_pred CCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCC
Q 012249 133 LALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPA 173 (467)
Q Consensus 133 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 173 (467)
.+|++|++++|.++.+|..++++++|++|++++|.+...+.
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 99999999999999999999999999999999999875443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=2.2e-12 Score=107.52 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=83.5
Q ss_pred CCCCCEEEccCCCCC-CCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEE
Q 012249 61 CEILSTLLLQRNENL-QRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYL 138 (467)
Q Consensus 61 l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L 138 (467)
.++++.|++++|.+. ..+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.....+| .+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466777888877743 255553 36777778888777777766 556777777777777764433355 45557777777
Q ss_pred EccCCcCcccc--ccccCCCCCcEEeccCCCCCCcCC---ccccCCCCCcEEEcc
Q 012249 139 DLYDTRIEEVP--EGMEMLENLSHLYLSSLQLKKFPA---GILPRLRSLYKLKLS 188 (467)
Q Consensus 139 ~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 188 (467)
++++|.++.+| ..++.+++|++|++++|.+..++. ..++.+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777654 556777777777777777666655 334566666666554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=3.4e-12 Score=109.60 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=73.4
Q ss_pred CCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-C-ccccCCccE
Q 012249 60 HCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-S-LARLLALQY 137 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~-l~~l~~L~~ 137 (467)
++++|+.|++++|. +..++. +....++|++|++++|.+..+ ..+..+++|++|++++| .+..+| . +..+++|++
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 45566666666665 334432 222233666666666666655 34566666666666665 334444 3 356666666
Q ss_pred EEccCCcCccccc--cccCCCCCcEEeccCCCCCCcCCc---cccCCCCCcEEEcccC
Q 012249 138 LDLYDTRIEEVPE--GMEMLENLSHLYLSSLQLKKFPAG---ILPRLRSLYKLKLSFG 190 (467)
Q Consensus 138 L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~ 190 (467)
|++++|.++.+|. .+..+++|++|++++|.+..+|.. ++..+++|+.|+++.+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6666666666665 566666666677666666555553 2356666666666555
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=1.2e-11 Score=106.19 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=111.3
Q ss_pred hhcCCCCcEEEccCCCCCCchhhhhcC-cCCCEEEcCCCCCCCcCCCccccCCccEEEccCCcCccccccc-cCCCCCcE
Q 012249 83 FVHMHGLKVVNLSSTDIEVLPSSVSDL-TNLRSLSLGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPEGM-EMLENLSH 160 (467)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~l~~~~~~l-~~L~~L~l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~ 160 (467)
+.++.+|++|++++|.+..++. +..+ ++|++|++++| .+..++.+..+++|++|++++|.++.+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3578899999999999998865 5554 59999999997 4555678999999999999999999998665 89999999
Q ss_pred EeccCCCCCCcCC-ccccCCCCCcEEEcccCCCccccc--HHHHHhhhccCcEEEcccCCcc
Q 012249 161 LYLSSLQLKKFPA-GILPRLRSLYKLKLSFGNEALRET--VEEAARLSDRLDYFEGYFSTLK 219 (467)
Q Consensus 161 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~~L~~L~l~~~~~~ 219 (467)
|++++|.+..+|. ..+..+++|+.|++++|....... ...+..+ ++|+.|+++.+...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l-~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV-PQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC-TTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC-CccceeCCCcCCHH
Confidence 9999999988886 234899999999999997654332 1258888 99999999887653
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=5.1e-11 Score=102.32 Aligned_cols=108 Identities=31% Similarity=0.465 Sum_probs=63.7
Q ss_pred CCCcEEEccCCCCCCchh-hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEe
Q 012249 87 HGLKVVNLSSTDIEVLPS-SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLY 162 (467)
Q Consensus 87 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~ 162 (467)
++|++|++++|.+..++. .+..+++|++|++++| .+..++ .+..+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 344455555544444332 2344555555555554 233333 245566666666666666666543 56677777777
Q ss_pred ccCCCCCCcCCccccCCCCCcEEEcccCCCccc
Q 012249 163 LSSLQLKKFPAGILPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 163 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (467)
+++|.+..++..++..+++|+.|++++|.....
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777777777776666777888888887765443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=5e-11 Score=103.84 Aligned_cols=122 Identities=29% Similarity=0.474 Sum_probs=97.4
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCCCEEEcCC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRSLSLGW 119 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~ 119 (467)
+.++++++.++.+|..+. ++++.|++++|. +..+|. .|..+++|++|++++|.+..++ ..+..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~-i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQ-FTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSC-CCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCc-CchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 567788888888876643 578888988887 567774 4588889999999999888765 4678889999999998
Q ss_pred CCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCC
Q 012249 120 CRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQL 168 (467)
Q Consensus 120 ~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 168 (467)
|. +..++ .+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 64 45444 588889999999999988888764 77889999999988875
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=8.4e-11 Score=100.94 Aligned_cols=126 Identities=25% Similarity=0.418 Sum_probs=92.4
Q ss_pred ccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhh-hhcCcCCCEEEcC
Q 012249 40 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSS-VSDLTNLRSLSLG 118 (467)
Q Consensus 40 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~ 118 (467)
.+.++++++.+..+|..+ .++|+.|++++|. +..++...+..+++|++|++++|.+..++.. +..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356777777777776543 3678888888877 5566666667788888888888888766543 5778888888888
Q ss_pred CCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCC
Q 012249 119 WCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKK 170 (467)
Q Consensus 119 ~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~ 170 (467)
+| .++.+| .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..
T Consensus 85 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 EN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 86 344554 367888888888888888877765 4778888888888887643
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.6e-11 Score=123.35 Aligned_cols=186 Identities=20% Similarity=0.192 Sum_probs=136.9
Q ss_pred EcCCCcccCCcCccCCCCccEEEeecCC-------------CcccCCCccCCCCCCCEEE-ccCCCCCCCCchhH-----
Q 012249 22 KAGLRLLEFPGEQEWEENLERVSLMRNN-------------IEEIPSNMSPHCEILSTLL-LQRNENLQRIPECF----- 82 (467)
Q Consensus 22 ~~~~~l~~~~~~~~~l~~l~~L~l~~~~-------------~~~l~~~~~~~l~~L~~L~-l~~~~~~~~~~~~~----- 82 (467)
.+++++..+|..++.+++|+.|++.++. ........+.++++|+.|+ +..+. ...++...
T Consensus 356 Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~~l~l~~n~ 434 (567)
T 1dce_A 356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLRSKFLLENS 434 (567)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHH
T ss_pred CChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhhhhhhhccc
Confidence 3455667788888888899998875542 2222222334677888887 44443 22222100
Q ss_pred hh--cCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCCCCCc
Q 012249 83 FV--HMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEMLENLS 159 (467)
Q Consensus 83 ~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~ 159 (467)
+. ....|++|++++|.+..+|. ++.+++|++|++++| .+..+| .++.+++|++|++++|.++.+| .++.+++|+
T Consensus 435 i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~ 511 (567)
T 1dce_A 435 VLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQ 511 (567)
T ss_dssp HHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred ccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCc
Confidence 01 12368999999999999887 899999999999997 566888 7999999999999999999998 899999999
Q ss_pred EEeccCCCCCCc--CCccccCCCCCcEEEcccCCCccccc--HHHHHhhhccCcEEEc
Q 012249 160 HLYLSSLQLKKF--PAGILPRLRSLYKLKLSFGNEALRET--VEEAARLSDRLDYFEG 213 (467)
Q Consensus 160 ~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~~L~~L~l 213 (467)
+|++++|.+..+ |..+ +++++|+.|++++|.+....+ ...+..+ ++|+.|++
T Consensus 512 ~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l-p~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEML-PSVSSILT 567 (567)
T ss_dssp EEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHC-TTCSEEEC
T ss_pred EEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHC-cccCccCC
Confidence 999999999888 5554 899999999999996654422 2345557 88888753
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1.4e-10 Score=110.23 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=122.3
Q ss_pred CCCccEEEeecCCCc--------------------ccCCCccCC--------CCCCCEEEccCCCCCCCCchhHhhcCCC
Q 012249 37 EENLERVSLMRNNIE--------------------EIPSNMSPH--------CEILSTLLLQRNENLQRIPECFFVHMHG 88 (467)
Q Consensus 37 l~~l~~L~l~~~~~~--------------------~l~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 88 (467)
+++|+.|++++|.+. .++...|.+ |++|+.+.+.. . +..++...|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcc
Confidence 557777777777666 456666667 78888888877 3 66777777788888
Q ss_pred CcEEEccCCCCCCch-hhhhcCcCCCEEEcCCC-----------------CCCC---------cCC--------------
Q 012249 89 LKVVNLSSTDIEVLP-SSVSDLTNLRSLSLGWC-----------------RRLK---------RVP-------------- 127 (467)
Q Consensus 89 L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~-----------------~~~~---------~~p-------------- 127 (467)
|+.+++.++.+..++ ..+..+.++.++..... ..+. .++
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 888888888766543 34445555555544331 0000 000
Q ss_pred --------------Cc-cccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCc-EEEcccC
Q 012249 128 --------------SL-ARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLY-KLKLSFG 190 (467)
Q Consensus 128 --------------~l-~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~ 190 (467)
.+ ..+.+|+.+++.+|+++.+|.. +.+|.+|+.+++..+ +..++...|.++.+|+ .+.+..+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~ 284 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS 284 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc
Confidence 00 0267899999998888888765 788889999999886 8888888888999998 8888762
Q ss_pred CCcccccHHHHHhhhccCcEEEcccCCccch
Q 012249 191 NEALRETVEEAARLSDRLDYFEGYFSTLKDF 221 (467)
Q Consensus 191 ~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 221 (467)
. .......|..+ ++|+.+.+..+.....
T Consensus 285 -l-~~I~~~aF~~c-~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 285 -V-TAIEFGAFMGC-DNLRYVLATGDKITTL 312 (329)
T ss_dssp -C-CEECTTTTTTC-TTEEEEEECSSCCCEE
T ss_pred -c-eEEchhhhhCC-ccCCEEEeCCCccCcc
Confidence 3 23333577777 8899988877665443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=8.7e-13 Score=115.72 Aligned_cols=131 Identities=27% Similarity=0.326 Sum_probs=86.6
Q ss_pred CCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCccccccccCC
Q 012249 77 RIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEGMEML 155 (467)
Q Consensus 77 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~~~~l 155 (467)
.+|.. +..+++|++|++++|.+..+| .+..+++|++|++++| .+..+| .+..+++|++|++++|.++.+| .+..+
T Consensus 39 ~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 39 KMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 34443 467777777777777777666 6677777777777775 344566 3555677777777777777766 56777
Q ss_pred CCCcEEeccCCCCCCcCC-ccccCCCCCcEEEcccCCCccc---------ccHHHHHhhhccCcEEE
Q 012249 156 ENLSHLYLSSLQLKKFPA-GILPRLRSLYKLKLSFGNEALR---------ETVEEAARLSDRLDYFE 212 (467)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~---------~~~~~l~~l~~~L~~L~ 212 (467)
++|++|++++|.+..++. ..+..+++|+.|++++|..... .....+..+ ++|+.|+
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l-~~L~~Ld 180 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL-PNLKKLD 180 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC-SSCSEEC
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC-CCcEEEC
Confidence 777777777777766554 2246777788888877744222 111246677 8888775
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=5.7e-13 Score=116.89 Aligned_cols=143 Identities=21% Similarity=0.318 Sum_probs=112.2
Q ss_pred CccEEEeecC--CCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCCCEEE
Q 012249 39 NLERVSLMRN--NIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNLRSLS 116 (467)
Q Consensus 39 ~l~~L~l~~~--~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 116 (467)
.++...+.+. .++.++.. +..+++|+.|++++|. +..+| . +..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~-l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNN-IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEE-ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCC-Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 4555666544 44555544 3478999999999997 55577 3 5789999999999999998888888889999999
Q ss_pred cCCCCCCCcCCCccccCCccEEEccCCcCccccc--cccCCCCCcEEeccCCCCCCcCC----------ccccCCCCCcE
Q 012249 117 LGWCRRLKRVPSLARLLALQYLDLYDTRIEEVPE--GMEMLENLSHLYLSSLQLKKFPA----------GILPRLRSLYK 184 (467)
Q Consensus 117 l~~~~~~~~~p~l~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~----------~~l~~l~~L~~ 184 (467)
+++| .+..+|.+..+++|++|++++|.++.++. .+..+++|++|++++|.+...+. .++..+++|+.
T Consensus 100 L~~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 100 ISYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CcCC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 9997 55666778889999999999999987765 68899999999999998744321 23578899998
Q ss_pred EE
Q 012249 185 LK 186 (467)
Q Consensus 185 L~ 186 (467)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 87
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=7e-10 Score=94.80 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=66.2
Q ss_pred cEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCC
Q 012249 90 KVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQ 167 (467)
Q Consensus 90 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 167 (467)
+.++++++.+..+|..+. .+|++|++++|......| .+..+++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 556666666666655442 566666666653322223 466667777777777777776654 4677777777777777
Q ss_pred CCCcCCccccCCCCCcEEEcccCCCc
Q 012249 168 LKKFPAGILPRLRSLYKLKLSFGNEA 193 (467)
Q Consensus 168 ~~~~~~~~l~~l~~L~~L~l~~~~~~ 193 (467)
+..++...+.++++|+.|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777765577777777777777554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=7.2e-10 Score=94.34 Aligned_cols=105 Identities=28% Similarity=0.339 Sum_probs=73.8
Q ss_pred CcEEEccCCCCCCchhhhhcCcCCCEEEcCCCCCCCcCC-CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCC
Q 012249 89 LKVVNLSSTDIEVLPSSVSDLTNLRSLSLGWCRRLKRVP-SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSL 166 (467)
Q Consensus 89 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 166 (467)
.++++++++.+..+|..+ ..+|++|++++|......| .+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456677777776666544 3667777777753333334 477777777777777777777665 578888888888888
Q ss_pred CCCCcCCccccCCCCCcEEEcccCCCccc
Q 012249 167 QLKKFPAGILPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 167 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (467)
.+..++...+.++++|+.|++++|.....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88888776667888888888888865433
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=9.2e-10 Score=94.05 Aligned_cols=105 Identities=21% Similarity=0.359 Sum_probs=75.1
Q ss_pred cEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhh-hhcCcCCCEEEcCC
Q 012249 41 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSS-VSDLTNLRSLSLGW 119 (467)
Q Consensus 41 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~ 119 (467)
+.++++++.+..+|..+. ++|+.|++++|. +..+++..|..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 567777777777776542 677888888887 5555545557788888888888888877654 46788888888887
Q ss_pred CCCCCcCC--CccccCCccEEEccCCcCccccc
Q 012249 120 CRRLKRVP--SLARLLALQYLDLYDTRIEEVPE 150 (467)
Q Consensus 120 ~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~ 150 (467)
| .+..+| .+..+++|++|++++|.+...+.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6 455555 37778888888888887665443
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=6.7e-10 Score=105.42 Aligned_cols=170 Identities=16% Similarity=0.155 Sum_probs=126.9
Q ss_pred CCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCC-------C---------
Q 012249 37 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDI-------E--------- 100 (467)
Q Consensus 37 l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------~--------- 100 (467)
+++|+.+.+.. .+..++...|.+|++|+.+++..+. +..++...|..+..+..+....... .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999988 8888988889899999999999987 5566766677777777666554110 0
Q ss_pred -----------Cchhh---------------------------h-hcCcCCCEEEcCCCCCCCcCC--CccccCCccEEE
Q 012249 101 -----------VLPSS---------------------------V-SDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLD 139 (467)
Q Consensus 101 -----------~l~~~---------------------------~-~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~ 139 (467)
.++.. + ..+++|+.+++++| .+..+| .+..+.+|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEE
Confidence 01110 0 13788999999985 477777 688899999999
Q ss_pred ccCCcCcccccc-ccCCCCCc-EEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEc
Q 012249 140 LYDTRIEEVPEG-MEMLENLS-HLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEG 213 (467)
Q Consensus 140 l~~~~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l 213 (467)
+.++ ++.++.. +.++.+|+ .+++.. .+..++...|.+|++|+.+++..+....... ..|.++ ++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~-~aF~~~-~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD-ELFGNG-VPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT-TTTCTT-CCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch-hhhcCC-cchhhhcc
Confidence 9886 7777654 78899998 999987 7888888888899999999987765544332 567777 88887753
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1.7e-09 Score=91.95 Aligned_cols=102 Identities=23% Similarity=0.370 Sum_probs=70.1
Q ss_pred ccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhh-hhcCcCCCEEEcC
Q 012249 40 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSS-VSDLTNLRSLSLG 118 (467)
Q Consensus 40 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~ 118 (467)
.+.++++++.++.+|..+ .++++.|++++|. +..+++..|..+++|++|++++|.+..++.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456777777777777654 2667777777776 5555444457777777777777777766544 4677777777777
Q ss_pred CCCCCCcCC--CccccCCccEEEccCCcCc
Q 012249 119 WCRRLKRVP--SLARLLALQYLDLYDTRIE 146 (467)
Q Consensus 119 ~~~~~~~~p--~l~~l~~L~~L~l~~~~~~ 146 (467)
+| .+..+| .+..+++|++|++++|.++
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 75 444444 3777778888888777665
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=1.7e-08 Score=96.46 Aligned_cols=112 Identities=20% Similarity=0.168 Sum_probs=73.1
Q ss_pred EEEccCC-CCCCchhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCC
Q 012249 91 VVNLSST-DIEVLPSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSL 166 (467)
Q Consensus 91 ~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~ 166 (467)
.++++++ ++..+|. +..+.+|++|+++++..+..++ .+..+.+|++|++++|.++.++. .+.++++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3456665 6666666 6666777777776523444444 46677777777777777776654 4677888888888888
Q ss_pred CCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhh
Q 012249 167 QLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARL 204 (467)
Q Consensus 167 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 204 (467)
.+..+|..++..+. |+.|++.+|.+...-.+..+...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~ 127 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRW 127 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHH
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHH
Confidence 88777776655555 88888887766544443444433
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=4.2e-08 Score=95.31 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=122.5
Q ss_pred CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCC
Q 012249 33 EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNL 112 (467)
Q Consensus 33 ~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L 112 (467)
+|..+ +|+.+.+..+ +..+....|.++ +|+.+.+... +..++...|.+|++|+.+++..+.+..++.....+.+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 44454 6888887655 777777777664 6888888763 66677777888889999999888888887666667888
Q ss_pred CEEEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEccc
Q 012249 113 RSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSF 189 (467)
Q Consensus 113 ~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 189 (467)
+.+.+.. .+..++ ++..+.+|+.+++..+ ++.++.. +.+ .+|+.+.+ .+.+..++...|.+|++|+.+.+..
T Consensus 206 ~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 206 EEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES
T ss_pred CEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC
Confidence 8888875 366666 6888888888888763 5666554 444 67888888 3557777777778888888888876
Q ss_pred CCCc----ccccHHHHHhhhccCcEEEcc
Q 012249 190 GNEA----LRETVEEAARLSDRLDYFEGY 214 (467)
Q Consensus 190 ~~~~----~~~~~~~l~~l~~~L~~L~l~ 214 (467)
+... .......+..+ .+|+.+.+.
T Consensus 281 ~~~~~~~~~~I~~~aF~~c-~~L~~l~l~ 308 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGC-PKLARFEIP 308 (401)
T ss_dssp SCCCCCTTCEECTTTTTTC-TTCCEECCC
T ss_pred ccccCCcccEECHHHhhCC-ccCCeEEeC
Confidence 6332 11222456666 788877775
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=5.9e-08 Score=94.30 Aligned_cols=177 Identities=10% Similarity=0.113 Sum_probs=117.2
Q ss_pred cccCCc-CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-h
Q 012249 27 LLEFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-S 104 (467)
Q Consensus 27 l~~~~~-~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~ 104 (467)
+..++. +|..+ +|+.+.+.. .+..+....|.+|++|+.+++..+. +..++...|. +..|+.+.+..+ +..++ .
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~ 220 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQ 220 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTT
T ss_pred ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhh
Confidence 445544 34443 688888874 6777777788888888888888776 6677777665 578888888743 55553 4
Q ss_pred hhhcCcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCC-----CcCCccc
Q 012249 105 SVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLK-----KFPAGIL 176 (467)
Q Consensus 105 ~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~-----~~~~~~l 176 (467)
.+..+.+|+.+.+..+ +..++ ++.. .+|+.+.+. +.++.++. .+.+|++|+.+.+.++... .++...|
T Consensus 221 aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred HhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 5667888888888763 55555 4544 667777773 34555644 4677777877777766543 5666667
Q ss_pred cCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEccc
Q 012249 177 PRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYF 215 (467)
Q Consensus 177 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 215 (467)
.+|++|+.+.+..+ . .......+..+ .+|+.+.+..
T Consensus 297 ~~c~~L~~l~l~~~-i-~~I~~~aF~~c-~~L~~l~lp~ 332 (401)
T 4fdw_A 297 EGCPKLARFEIPES-I-RILGQGLLGGN-RKVTQLTIPA 332 (401)
T ss_dssp TTCTTCCEECCCTT-C-CEECTTTTTTC-CSCCEEEECT
T ss_pred hCCccCCeEEeCCc-e-EEEhhhhhcCC-CCccEEEECc
Confidence 77777777777642 2 22222456666 7777777743
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.73 E-value=1.1e-09 Score=105.34 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=16.2
Q ss_pred CCccEEEccCCcCcc-----ccccccCCCCCcEEeccCCCC
Q 012249 133 LALQYLDLYDTRIEE-----VPEGMEMLENLSHLYLSSLQL 168 (467)
Q Consensus 133 ~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~ 168 (467)
++|++|++++|.++. ++..+..+++|++|++++|.+
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence 445555555554431 222334444455555555544
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=3.5e-08 Score=94.23 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=62.6
Q ss_pred EEcCC-CcccCCcCccCCCCccEEEeec-CCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 21 VKAGL-RLLEFPGEQEWEENLERVSLMR-NNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 21 ~~~~~-~l~~~~~~~~~l~~l~~L~l~~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
...+. ++..+|. +..+++|+.|++++ |.+..++...+.++++|+.|++++|. +..+++..|.++++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 5666776 66666777777774 67766666555567777777777775 455555555677777777777777
Q ss_pred CCCchhhhhcCcCCCEEEcCCC
Q 012249 99 IEVLPSSVSDLTNLRSLSLGWC 120 (467)
Q Consensus 99 ~~~l~~~~~~l~~L~~L~l~~~ 120 (467)
+..+|..+.....|++|++.+|
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSS
T ss_pred cceeCHHHcccCCceEEEeeCC
Confidence 7666554443333666666665
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=4.7e-09 Score=101.01 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=115.3
Q ss_pred CCccEEEeecCCCcc-----cCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCC-----chhhh-
Q 012249 38 ENLERVSLMRNNIEE-----IPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEV-----LPSSV- 106 (467)
Q Consensus 38 ~~l~~L~l~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~~- 106 (467)
++++.+++++|.++. +...+...+++|+.|++++|.+...-...+...+++|++|++++|.+.. +...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 578999999999873 2222222447999999999984332223344556789999999999873 22333
Q ss_pred hcCcCCCEEEcCCCCCCCcCC------CccccCCccEEEccCCcCcc-----ccccccCCCCCcEEeccCCCCCCcCCc-
Q 012249 107 SDLTNLRSLSLGWCRRLKRVP------SLARLLALQYLDLYDTRIEE-----VPEGMEMLENLSHLYLSSLQLKKFPAG- 174 (467)
Q Consensus 107 ~~l~~L~~L~l~~~~~~~~~p------~l~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~- 174 (467)
...++|++|++++|. ++..+ .+...++|++|++++|.++. ++..+...++|++|++++|.++.....
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 247889999999984 44322 35778899999999998873 355677888999999999988643321
Q ss_pred ---cccCCCCCcEEEcccCCCcccccHHHHHhh
Q 012249 175 ---ILPRLRSLYKLKLSFGNEALRETVEEAARL 204 (467)
Q Consensus 175 ---~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 204 (467)
.+...++|++|++++|.+.. .....+..+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~-~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS-EGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH-HHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCH-HHHHHHHHH
Confidence 12466889999999886533 333455544
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.55 E-value=7.3e-07 Score=86.60 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=62.6
Q ss_pred ccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCc-hhhhhcCcCC
Q 012249 34 QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVL-PSSVSDLTNL 112 (467)
Q Consensus 34 ~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L 112 (467)
|..+++|+.+.+. +.++.+....|.+|.+|+.+++..+ +..++...|..+..|+.+.+..+ +..+ ...+..+..+
T Consensus 67 F~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 3444555555553 2344444445555555555555433 33444444455555554443322 1111 1122222222
Q ss_pred CEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEccc
Q 012249 113 RSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSF 189 (467)
Q Consensus 113 ~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 189 (467)
...... ....++ ++..+.+|+.+.+.++ +..++. .+.++.+|+.+.+..+ +..+....+.++..|+.+.+..
T Consensus 143 ~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 143 EITIPE---GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EEECCT---TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCc---cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 111111 111222 3555555666655433 233332 2445555555555433 4444444445555555554443
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=5.8e-08 Score=81.70 Aligned_cols=93 Identities=9% Similarity=0.114 Sum_probs=68.0
Q ss_pred cccEEEEecCCCCccccccchHHhhhccceeeeCCccchhhhhcccCchhhhhhccccccccc-cccccccccccccccc
Q 012249 312 DLKVLRFDSCKNLKNLFSLRLLPALQNLKVLAVISCNSIEEIVAVEDEDTEKELATNTIINTV-TLPRLKKLRFYDLPEF 390 (467)
Q Consensus 312 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l 390 (467)
.|++|++++|. +++. .+..+..+++|+.|++++|..+++.-- ..+.... ..++|++|+|++|+++
T Consensus 62 ~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL------------~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCL------------ERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHH------------HHHHTCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHH------------HHHHhcccccCCCCEEEcCCCCcC
Confidence 39999999987 6663 455567899999999999988776511 1111000 1358999999999998
Q ss_pred cccccCCCccccCCcceEEEeCCCCcccc
Q 012249 391 KSFCSYNGVLVCNSLQEIEVRRCPKLKRL 419 (467)
Q Consensus 391 ~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 419 (467)
++-....- ..+++|++|.+++|+++++.
T Consensus 128 TD~Gl~~L-~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 128 TDKGIIAL-HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CHHHHHHG-GGCTTCCEEEEESCTTCCCH
T ss_pred CHHHHHHH-hcCCCCCEEECCCCCCCCch
Confidence 88554432 35899999999999999874
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=6.2e-07 Score=85.55 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=7.2
Q ss_pred CCCCcEEeccCCCC
Q 012249 155 LENLSHLYLSSLQL 168 (467)
Q Consensus 155 l~~L~~L~l~~~~~ 168 (467)
+++|++|++.+|.+
T Consensus 251 ~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 251 FPNLKWLGIVDAEE 264 (362)
T ss_dssp CTTCCEEEEESCTT
T ss_pred CCCcCEEeCCCCCC
Confidence 45555555555444
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.6e-05 Score=66.73 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=48.8
Q ss_pred CCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC-CC-CchhhhhcC----cCCCEEEcCCCCCCCcCC--CccccCC
Q 012249 63 ILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD-IE-VLPSSVSDL----TNLRSLSLGWCRRLKRVP--SLARLLA 134 (467)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-~l~~~~~~l----~~L~~L~l~~~~~~~~~p--~l~~l~~ 134 (467)
+|+.|++++|. +....-..+.++++|++|++++|. +. .-...+..+ ++|++|++++|..+++.. .+.++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46666666665 333322223566667777776663 44 112233432 467777777777666654 4667777
Q ss_pred ccEEEccCC-cCc
Q 012249 135 LQYLDLYDT-RIE 146 (467)
Q Consensus 135 L~~L~l~~~-~~~ 146 (467)
|++|++++| .++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 777777777 555
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=6.2e-06 Score=78.61 Aligned_cols=176 Identities=19% Similarity=0.179 Sum_probs=113.0
Q ss_pred CccCCCCccEEEeecCCCcc-----c----CCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCC-Cc
Q 012249 33 EQEWEENLERVSLMRNNIEE-----I----PSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE-VL 102 (467)
Q Consensus 33 ~~~~l~~l~~L~l~~~~~~~-----l----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l 102 (467)
....+++|+.|.+.....+. + ...+...+|+|+.|.+.++.. ..++. + .+++|++|++..+.+. ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~--~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K--PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C--BCTTCSEEEEECSBCCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c--cCCCCcEEEEecCCCChHH
Confidence 35567899999986543221 1 112334689999999998842 23443 2 4889999999998876 22
Q ss_pred hhhhh--cCcCCCEEEcCCCC-------CCCcCC---CccccCCccEEEccCCcCcc-cccc---ccCCCCCcEEeccCC
Q 012249 103 PSSVS--DLTNLRSLSLGWCR-------RLKRVP---SLARLLALQYLDLYDTRIEE-VPEG---MEMLENLSHLYLSSL 166 (467)
Q Consensus 103 ~~~~~--~l~~L~~L~l~~~~-------~~~~~p---~l~~l~~L~~L~l~~~~~~~-lp~~---~~~l~~L~~L~l~~~ 166 (467)
...+. .+++|++|++..+. .+..+. ....+++|++|++.+|.+.. .+.. ...+++|++|+++.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 23343 79999999985321 111121 12457899999999997762 2222 236899999999999
Q ss_pred CCCC-----cCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEcccC
Q 012249 167 QLKK-----FPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEGYFS 216 (467)
Q Consensus 167 ~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 216 (467)
.+.+ ++..+ .++++|+.|+++.|.. +...+..++.. - ...++++.+
T Consensus 290 ~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i-~d~~~~~l~~a-l-g~~~~~~~~ 340 (362)
T 2ra8_A 290 VLTDEGARLLLDHV-DKIKHLKFINMKYNYL-SDEMKKELQKS-L-PMKIDVSDS 340 (362)
T ss_dssp CCBHHHHHHHHTTH-HHHTTCSEEECCSBBC-CHHHHHHHHHH-C-CSEEECCSB
T ss_pred CCChHHHHHHHhhc-ccCCcceEEECCCCcC-CHHHHHHHHHH-c-CCEEEecCC
Confidence 8854 33332 5679999999998843 33334445442 1 244566544
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=6.8e-06 Score=70.53 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=38.1
Q ss_pred hcCCCCcEEEccCC-CCC-----CchhhhhcCcCCCEEEcCCCCCCCcCC------CccccCCccEEEccCCcCcc----
Q 012249 84 VHMHGLKVVNLSST-DIE-----VLPSSVSDLTNLRSLSLGWCRRLKRVP------SLARLLALQYLDLYDTRIEE---- 147 (467)
Q Consensus 84 ~~l~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~p------~l~~l~~L~~L~l~~~~~~~---- 147 (467)
...+.|++|++++| .+. .+...+...++|++|++++|. ++... .+...++|++|++++|.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 34455555555555 444 223334444555555555542 22211 12333445555555554441
Q ss_pred -ccccccCCCCCcEEec--cCCCC
Q 012249 148 -VPEGMEMLENLSHLYL--SSLQL 168 (467)
Q Consensus 148 -lp~~~~~l~~L~~L~l--~~~~~ 168 (467)
+...+...++|++|++ ++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCC
Confidence 3334444555555555 44544
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.86 E-value=1.1e-05 Score=69.18 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=72.3
Q ss_pred cCCCCCCCEEEccCC-CCCCCCc----hhHhhcCCCCcEEEccCCCCC-----CchhhhhcCcCCCEEEcCCCCCCCcC-
Q 012249 58 SPHCEILSTLLLQRN-ENLQRIP----ECFFVHMHGLKVVNLSSTDIE-----VLPSSVSDLTNLRSLSLGWCRRLKRV- 126 (467)
Q Consensus 58 ~~~l~~L~~L~l~~~-~~~~~~~----~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~- 126 (467)
....+.|+.|++++| . ++.-. ...+...+.|++|++++|.+. .+...+...+.|++|++++|. ++..
T Consensus 32 l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 346788888888888 5 33211 122356788899999998887 345566777889999999874 4432
Q ss_pred ----C-CccccCCccEEEc--cCCcCcc-----ccccccCCCCCcEEeccCCCC
Q 012249 127 ----P-SLARLLALQYLDL--YDTRIEE-----VPEGMEMLENLSHLYLSSLQL 168 (467)
Q Consensus 127 ----p-~l~~l~~L~~L~l--~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~ 168 (467)
. .+...+.|++|++ ++|.+.. +...+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 4667788999999 7787772 333444555666666665544
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.0012 Score=63.72 Aligned_cols=151 Identities=14% Similarity=0.177 Sum_probs=101.2
Q ss_pred CccCCC-CccEEEeecCCCcccCCCccCCCCCCCEEEccCCC--CCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhc
Q 012249 33 EQEWEE-NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNE--NLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSD 108 (467)
Q Consensus 33 ~~~~l~-~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~ 108 (467)
+|..++ .|+.+.+.. .++.+....|.+|.+|+.+.+..+. .+..++...|..+..|+.+.+..+ +..+. ..+..
T Consensus 58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455554 589999864 5788888889899999999987652 255677777888999988777654 44443 45678
Q ss_pred CcCCCEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEE
Q 012249 109 LTNLRSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLK 186 (467)
Q Consensus 109 l~~L~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 186 (467)
+.+|+.+.+.. .+..++ .+..+..|+.+.+..+ ++.+.........|+.+.+... ...+....+..+.++....
T Consensus 136 c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred hcccccccccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhccccceec
Confidence 89999999875 345555 5778888888888654 4455444333456777776543 2333333355666666655
Q ss_pred ccc
Q 012249 187 LSF 189 (467)
Q Consensus 187 l~~ 189 (467)
...
T Consensus 212 ~~~ 214 (394)
T 4gt6_A 212 SDS 214 (394)
T ss_dssp ECC
T ss_pred ccc
Confidence 443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=0.00014 Score=65.74 Aligned_cols=62 Identities=27% Similarity=0.252 Sum_probs=29.2
Q ss_pred hcCCCCcEEEccCCCCCCc---hhhhhcCcCCCEEEcCCCCCCCcCCCccccC--CccEEEccCCcCc
Q 012249 84 VHMHGLKVVNLSSTDIEVL---PSSVSDLTNLRSLSLGWCRRLKRVPSLARLL--ALQYLDLYDTRIE 146 (467)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~p~l~~l~--~L~~L~l~~~~~~ 146 (467)
.++++|+.|+|++|.+..+ +..+..+++|++|++++| .+..+..+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCc
Confidence 3455566666666555533 233445555555555554 233322222222 4555555555443
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.43 E-value=0.0012 Score=63.66 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=91.3
Q ss_pred CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCchhhhhcCcCC
Q 012249 33 EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLPSSVSDLTNL 112 (467)
Q Consensus 33 ~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L 112 (467)
.+..+..|+.+.+..+. ..+....+ .+..|+.+.+... ...+....|..+..|+.+.+..+....-...+..+..+
T Consensus 203 ~F~~~~~L~~i~~~~~~-~~i~~~~~-~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 203 CFAECILLENMEFPNSL-YYLGDFAL-SKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGL 278 (394)
T ss_dssp TTTTCTTCCBCCCCTTC-CEECTTTT-TTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTC
T ss_pred hhccccccceeecCCCc-eEeehhhc-ccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeecccccccccc
Confidence 34455666666554432 22223333 4566777766543 33444555667777777777665333223345556666
Q ss_pred CEEEcCCCCCCCcCC--CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEccc
Q 012249 113 RSLSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSF 189 (467)
Q Consensus 113 ~~L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 189 (467)
+.+..... .++ .+..+.+|+.+.+..+ ++.++. .+.++.+|+.+++.. .+..+....|.+|++|+.+.+..
T Consensus 279 ~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 279 KKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp CEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCT
T ss_pred ceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECc
Confidence 66655432 122 4556666666666443 444443 355666777666643 35556665566677777766654
Q ss_pred CCCcccccHHHHHhhhccCcEEEcc
Q 012249 190 GNEALRETVEEAARLSDRLDYFEGY 214 (467)
Q Consensus 190 ~~~~~~~~~~~l~~l~~~L~~L~l~ 214 (467)
+ . .......+... .+|+.+.+.
T Consensus 353 ~-l-~~I~~~aF~~C-~~L~~i~lp 374 (394)
T 4fs7_A 353 S-L-RKIGANAFQGC-INLKKVELP 374 (394)
T ss_dssp T-C-CEECTTTBTTC-TTCCEEEEE
T ss_pred c-c-cEehHHHhhCC-CCCCEEEEC
Confidence 3 1 22222345555 666666663
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=0.0004 Score=62.74 Aligned_cols=78 Identities=23% Similarity=0.262 Sum_probs=57.9
Q ss_pred CCCCCCEEEccCCCCCCCCch--hHhhcCCCCcEEEccCCCCCCchhhhhcCc--CCCEEEcCCCCCCCcCC--------
Q 012249 60 HCEILSTLLLQRNENLQRIPE--CFFVHMHGLKVVNLSSTDIEVLPSSVSDLT--NLRSLSLGWCRRLKRVP-------- 127 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~--~L~~L~l~~~~~~~~~p-------- 127 (467)
++++|+.|++++|. +..++. ..+..+++|++|+|++|.+..+. .+..+. +|++|++++|.....+|
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 58899999999998 444332 34579999999999999999762 344444 99999999987555454
Q ss_pred CccccCCccEEE
Q 012249 128 SLARLLALQYLD 139 (467)
Q Consensus 128 ~l~~l~~L~~L~ 139 (467)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 145666666665
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.20 E-value=0.003 Score=60.49 Aligned_cols=145 Identities=13% Similarity=0.169 Sum_probs=84.3
Q ss_pred CCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCc-hhhhhcCcCCCEEEcCCCCCCCcCC--CccccCCcc
Q 012249 60 HCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVL-PSSVSDLTNLRSLSLGWCRRLKRVP--SLARLLALQ 136 (467)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~p--~l~~l~~L~ 136 (467)
.+..+..+.+... ...+....+..+..|+.+.+..+ +..+ ...+..+..|+.+.+..+ +..++ .+..+.+|+
T Consensus 192 ~~~~~~~~~~~~~--~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 192 AAKTGTEFTIPST--VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK 266 (379)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred ccccccccccccc--eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhc
Confidence 3444444444433 22233334456667777766543 3322 234566777777777653 44444 466677777
Q ss_pred EEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCcccccHHHHHhhhccCcEEEc
Q 012249 137 YLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALRETVEEAARLSDRLDYFEG 213 (467)
Q Consensus 137 ~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l 213 (467)
.+.+.. .++.++. .+.++.+|+.+.+..+.+..++...|.+|.+|+.+.+..+ ........+.+. ++|+.+.+
T Consensus 267 ~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C-~~L~~i~i 340 (379)
T 4h09_A 267 TLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNC-KALSTISY 340 (379)
T ss_dssp EEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC-TTCCCCCC
T ss_pred cccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCC-CCCCEEEE
Confidence 777644 3555544 3667777777777776677777766777777777777543 222222455565 77776665
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.14 E-value=0.0027 Score=60.78 Aligned_cols=148 Identities=13% Similarity=0.158 Sum_probs=106.8
Q ss_pred CCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCCCE
Q 012249 36 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRS 114 (467)
Q Consensus 36 ~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~ 114 (467)
....+..+.+... ...+....+..+.+++.+.+..+ +..++...|..+..|+.+.+..+ +..+. ..+..+..|+.
T Consensus 192 ~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 192 AAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp TTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccc-eeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 3445555555433 23344445557888888888665 55566666788889999988765 55443 45677888999
Q ss_pred EEcCCCCCCCcCC--CccccCCccEEEccCCcCcccccc-ccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccC
Q 012249 115 LSLGWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPEG-MEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFG 190 (467)
Q Consensus 115 L~l~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 190 (467)
+.+.. .+..++ .+..+.+|+.+.+.++.++.++.. +.+|.+|+.+.+.. .+..+....|.+|++|+.+.+..+
T Consensus 268 i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 268 LNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc
Confidence 98875 366666 588889999999988888877654 78899999999864 477777777889999998887643
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.01 E-value=0.0022 Score=61.79 Aligned_cols=142 Identities=16% Similarity=0.283 Sum_probs=93.1
Q ss_pred CccEEEeecCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCCCch-hhhhcCcCCCEEEc
Q 012249 39 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIEVLP-SSVSDLTNLRSLSL 117 (467)
Q Consensus 39 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l 117 (467)
.+..+.+. +.+..+....|.+|.+|+.+.+... ...++...|.++..|+.+.+. +.+..++ ..+..|.+|+.+.+
T Consensus 243 ~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 243 EDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEcC-CcceEcccceeeecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 34444443 3445566667778889998888665 345666777888999998886 3455554 45677889999998
Q ss_pred CCCCCCCcCC--CccccCCccEEEccCCcCccccc-cccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccC
Q 012249 118 GWCRRLKRVP--SLARLLALQYLDLYDTRIEEVPE-GMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFG 190 (467)
Q Consensus 118 ~~~~~~~~~p--~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 190 (467)
.. .++.++ ++..+.+|+.+.+..+ ++.+.. .+.+|.+|+.+++.++... . ..+..+.+|+.+.+..+
T Consensus 319 p~--~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 319 PE--GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CT--TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCCCC--------
T ss_pred CC--cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCCC
Confidence 76 366666 6888899999988543 666654 4788999999988876421 1 11356777777776543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.51 E-value=0.036 Score=43.92 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=46.7
Q ss_pred cEEEccCCcCc--cccccccCCCCCcEEeccCCCCCCcCCccccCCCCCcEEEcccCCCccc
Q 012249 136 QYLDLYDTRIE--EVPEGMEMLENLSHLYLSSLQLKKFPAGILPRLRSLYKLKLSFGNEALR 195 (467)
Q Consensus 136 ~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 195 (467)
..++.++.+++ .+|..+. ++|++|++++|.+..++..+|..+++|+.|++.+|...-.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 46777888887 7886543 4689999999999999998888899999999998865443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.47 E-value=0.022 Score=45.14 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=30.3
Q ss_pred EEEeecCCCc--ccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCCCC
Q 012249 42 RVSLMRNNIE--EIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTDIE 100 (467)
Q Consensus 42 ~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 100 (467)
.++-+++.++ .+|..+ -++++.|++++|. +..++...|..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 4444455554 555432 2346666666665 55555555566666666666666443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.00 E-value=0.097 Score=44.56 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=7.4
Q ss_pred hhhcCcCCCEEEcCCC
Q 012249 105 SVSDLTNLRSLSLGWC 120 (467)
Q Consensus 105 ~~~~l~~L~~L~l~~~ 120 (467)
.+..-..|+.|++++|
T Consensus 65 aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 65 AACNSKHIEKFSLANT 80 (197)
T ss_dssp HHTTCSCCCEEECTTS
T ss_pred HHhhCCCcCEEEccCC
Confidence 3344444555555443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.37 E-value=0.14 Score=43.53 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=74.8
Q ss_pred hhhcCcCCCEEEcCCCCCCCcCC------CccccCCccEEEccCCcCc-----cccccccCCCCCcEEeccCCCCCCcCC
Q 012249 105 SVSDLTNLRSLSLGWCRRLKRVP------SLARLLALQYLDLYDTRIE-----EVPEGMEMLENLSHLYLSSLQLKKFPA 173 (467)
Q Consensus 105 ~~~~l~~L~~L~l~~~~~~~~~p------~l~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~ 173 (467)
.+.+-+.|+.|+++++..++... .+..=..|+.|++++|.+. .+...+..-+.|++|+++.|.+..--.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 33556778888887753444322 3555678999999999888 334456667899999999999853221
Q ss_pred ----ccccCCCCCcEEEcccCCC--ccccc----HHHHHhhhccCcEEEcccCCc
Q 012249 174 ----GILPRLRSLYKLKLSFGNE--ALRET----VEEAARLSDRLDYFEGYFSTL 218 (467)
Q Consensus 174 ----~~l~~l~~L~~L~l~~~~~--~~~~~----~~~l~~l~~~L~~L~l~~~~~ 218 (467)
..+..-+.|++|+++++.. .+... ...+..- +.|+.|+++.+..
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCCc
Confidence 1235667799999986532 22221 2345556 7899999876643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.78 E-value=4.5 Score=29.87 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=19.7
Q ss_pred CccCCCCccEEEeecCCCcccCCCccCCCCCCCEEEccCC
Q 012249 33 EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRN 72 (467)
Q Consensus 33 ~~~~l~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~ 72 (467)
+|.++.+|+.+.+.. .++.+....|.+|.+|+.+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 444555555555543 234444455555555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.55 E-value=20 Score=26.28 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=42.4
Q ss_pred cCCCcccCCCccCCCCCCCEEEccCCCCCCCCchhHhhcCCCCcEEEccCCC
Q 012249 47 RNNIEEIPSNMSPHCEILSTLLLQRNENLQRIPECFFVHMHGLKVVNLSSTD 98 (467)
Q Consensus 47 ~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (467)
+..++.+....|.+|.+|+.+.+-.. +..+....|.+|.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence 44567788888999999999999886 677888889999999999998753
No 167
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=31.64 E-value=9.8 Score=37.88 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=15.4
Q ss_pred ChhhHHHHHHHhhhcCC
Q 012249 1 MHDLIRDMALRITSKSP 17 (467)
Q Consensus 1 mhdl~~dl~~~~~~~~~ 17 (467)
|||+|||+|+.++++++
T Consensus 456 mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCHHHHHHHHTTSCTHH
T ss_pred eChHHHHHHHHHHHHHH
Confidence 89999999999988765
Done!