BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012255
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 107/509 (21%), Positives = 209/509 (41%), Gaps = 79/509 (15%)
Query: 6 DHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGN 65
D ++ +++ I DR+SASL C+R++++D+E R + + + L+ RF N
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLS---RRFPN 74
Query: 66 LTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTF---------ITDVGLC 116
L +++ + ++ G + P++T+++ N ++D+ L
Sbjct: 75 LRSLKLKGKPRAAMFNLIPENWGGYV----TPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130
Query: 117 YLASCL--NLSTLKLKFTTRITGCGILSVVVGCKNL-TVLHLIRCLNVNSVEWLEYLGK- 172
LA +L TLKL + T G+LS+V C+ + T+L + +WL L +
Sbjct: 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190
Query: 173 ---LERLE--------------DLLIKNCRA-----IGEGDLIKLGPCWRKLKRLQ---- 206
LE L + + +NCR+ +G+ ++++L ++ L+
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250
Query: 207 ----FEVDVNYRYMKVYD-----RLAVDRWQRQRVP-----CENMVELSLKNCIISPGRG 252
++ + +YM + RL + +P + +L L ++
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET-ED 309
Query: 253 LACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312
++ KC NLE + +G R ++ +AQ +L+ LR+ + +
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEV--LAQYCKQLK--RLRIERGADEQGMEDEEGLV 365
Query: 313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQK-CPVRELSLDYVYSFN 371
+ L ALA C+ LE + + SD I++ +L+ I T ++ C R + LD
Sbjct: 366 SQRGLIALAQGCQELEYMAVYVSD-----ITNESLESIGTYLKNLCDFRLVLLDREERIT 420
Query: 372 DVGMEALCSAHYLEILELARCQ------EISDEGLQLACQFPHLSILRLRKCLGVTDDGL 425
D+ ++ + + +L R ++D GL Q+ L +G +D+GL
Sbjct: 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480
Query: 426 KPLV-GSHKLDLLAVEDCPQVSERGVQGA 453
G L L + C SER + A
Sbjct: 481 MEFSRGCPNLQKLEMRGCC-FSERAIAAA 508
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 26/223 (11%)
Query: 217 KVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRD 276
K + RLA D Q + + + L N +I L +L +C L+ + L+ G+R
Sbjct: 37 KRWYRLASDESLWQTLDEFRVQHMDLSNSVIEVST-LHGILSQCSKLQNLSLE---GLRL 92
Query: 277 SD-IINMAQTSSKLRSISLRV---PSDFSLPILMSNPLRLTDESLKALADNCRMLESVRI 332
SD I+N +S L ++L S+F+L L+S+ RL + +L D V +
Sbjct: 93 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 152
Query: 333 SFSDGEFPSISSFTLDG---------ILTLIQKCP-VRELSL-DYVYSFNDVGMEALCSA 381
+ +I+ L G + TL+++CP + L L D V ND E
Sbjct: 153 AHVS---ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QL 208
Query: 382 HYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDG 424
+YL+ L L+RC +I E L + P L L++ G+ DG
Sbjct: 209 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV---FGIVPDG 248
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 3 TLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVG--CGLDPVNEALTSLC 60
+ P+ ++ + I+ DRNS SL CK +YE++ R + +G + P ++
Sbjct: 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSP-----ATVI 62
Query: 61 NRFGNLTKVEISYAGWMSRLGKQLDDQGLLI------LSNSCPYLTDLTLNYCTFITDVG 114
RF + VE+ + D G + +S+S +L ++ L D
Sbjct: 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL 122
Query: 115 LCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSV--EWLEYL 170
S N L L + G+ ++ C+NL L L R +V+ V WL +
Sbjct: 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL-RESDVDDVSGHWLSHF 179
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 339 FPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAH-YLEILELARCQEISD 397
FP + S L G V + YVY + +EA+ S++ +LE + L R ++D
Sbjct: 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPW----IEAMSSSYTWLEEIRLKR-MVVTD 119
Query: 398 EGLQL-ACQFPHLSILRLRKCLGVTDDGLKPLVGS 431
+ L+L A F + +L L C G + DGL + +
Sbjct: 120 DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 239 ELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSD-IINMAQTSSKLRSISLRV- 296
+ L N +I L +L +C L+ + L+ G+R SD I+N +S L ++L
Sbjct: 97 HMDLSNSVIEVST-LHGILSQCSKLQNLSLE---GLRLSDPIVNTLAKNSNLVRLNLSGC 152
Query: 297 --PSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDG----- 349
S+F+L L+S+ RL + +L D V ++ +I+ L G
Sbjct: 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS---ETITQLNLSGYRKNL 209
Query: 350 ----ILTLIQKCP-VRELSL-DYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLA 403
+ TL+++CP + L L D V ND E +YL+ L L+RC +I E L
Sbjct: 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLEL 268
Query: 404 CQFPHLSILRLRKCLGVTDDG 424
+ P L L++ G+ DG
Sbjct: 269 GEIPTLKTLQV---FGIVPDG 286
>pdb|3MCX|A Chain A, Crystal Structure Of Susd Superfamily Protein (bt_2365)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.49 A
Resolution
Length = 477
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 341 SISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGL 400
S +FTLD IL +K V E + Y Y N + +E S H LE L+ + Q+I L
Sbjct: 397 STETFTLDRILKERRKELVGEGEVFYDYLRNGLAIERKGSWH-LETLKASNAQKIEATDL 455
Query: 401 QLACQFPHLSI 411
++A P I
Sbjct: 456 RIALPIPQSEI 466
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 373 VGMEALCSAHYLEILELARCQEISDEGLQLACQFPHL--SILRLR--KCLGVTDDGLKPL 428
+G + + Y+E + L +C I D L+ Q +L S+L + C VTD G+ L
Sbjct: 76 IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135
Query: 429 VGSHKLDLLAVEDCPQVSER 448
L L + D P V E+
Sbjct: 136 HHFRNLKYLFLSDLPGVKEK 155
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 373 VGMEALCSAHYLEILELARCQEISDEGLQLACQFPHL--SILRLR--KCLGVTDDGLKPL 428
+G + + Y+E + L +C I D L+ Q +L S+L + C VTD G+ L
Sbjct: 76 IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135
Query: 429 VGSHKLDLLAVEDCPQVSER 448
L L + D P V E+
Sbjct: 136 HHFRNLKYLFLSDLPGVKEK 155
>pdb|3FS2|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Bruciella Melitensis At 1.85a Resolution
pdb|3FS2|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Bruciella Melitensis At 1.85a Resolution
Length = 298
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 6 DHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFG 64
DH +E+ GR+K+ D+ L K ++ N L G GL+ E + L +G
Sbjct: 55 DH-AFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,052,570
Number of Sequences: 62578
Number of extensions: 510953
Number of successful extensions: 1363
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 25
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)