Query 012255
Match_columns 467
No_of_seqs 206 out of 2851
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 00:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2E-39 4.3E-44 286.6 12.7 372 3-464 74-458 (483)
2 KOG4341 F-box protein containi 100.0 3.2E-31 6.8E-36 234.8 10.9 305 51-442 151-462 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 6.2E-25 1.3E-29 186.7 11.1 147 2-158 99-270 (419)
4 KOG1947 Leucine rich repeat pr 99.7 1.6E-16 3.5E-21 157.5 15.6 208 231-456 239-451 (482)
5 KOG2120 SCF ubiquitin ligase, 99.7 3.4E-17 7.3E-22 139.9 6.7 203 234-461 184-390 (419)
6 PLN00113 leucine-rich repeat r 99.7 5.2E-16 1.1E-20 166.4 13.3 341 58-443 87-439 (968)
7 PLN00113 leucine-rich repeat r 99.6 1.1E-15 2.4E-20 163.9 12.8 344 59-443 113-486 (968)
8 cd00116 LRR_RI Leucine-rich re 99.6 7.1E-14 1.5E-18 130.7 22.1 82 359-443 223-318 (319)
9 cd00116 LRR_RI Leucine-rich re 99.6 5.2E-14 1.1E-18 131.6 19.7 198 234-458 80-303 (319)
10 KOG4194 Membrane glycoprotein 99.6 3.1E-16 6.7E-21 145.7 3.1 59 378-439 388-446 (873)
11 KOG1947 Leucine rich repeat pr 99.6 3.4E-14 7.4E-19 140.9 14.2 257 146-458 159-427 (482)
12 KOG4194 Membrane glycoprotein 99.5 2.7E-15 5.9E-20 139.5 1.0 249 148-443 173-427 (873)
13 PLN03210 Resistant to P. syrin 99.4 2.2E-12 4.8E-17 139.1 11.5 160 259-450 776-948 (1153)
14 KOG1909 Ran GTPase-activating 99.3 2.2E-11 4.7E-16 107.2 13.1 201 231-457 88-324 (382)
15 PLN03210 Resistant to P. syrin 99.3 1.9E-11 4E-16 132.0 12.3 291 97-447 611-908 (1153)
16 KOG1909 Ran GTPase-activating 99.0 2.7E-09 5.8E-14 94.2 10.8 186 255-466 86-303 (382)
17 KOG3207 Beta-tubulin folding c 98.9 4.5E-10 9.8E-15 101.8 1.5 185 233-443 144-337 (505)
18 PF12937 F-box-like: F-box-lik 98.9 9.6E-10 2.1E-14 69.7 2.4 37 1-38 1-37 (47)
19 KOG3207 Beta-tubulin folding c 98.8 1.6E-09 3.4E-14 98.4 2.2 188 232-443 118-312 (505)
20 KOG3665 ZYG-1-like serine/thre 98.6 1.6E-07 3.5E-12 94.6 10.1 60 262-334 123-182 (699)
21 KOG0444 Cytoskeletal regulator 98.6 4.1E-10 8.8E-15 106.6 -8.2 180 233-445 195-375 (1255)
22 KOG0444 Cytoskeletal regulator 98.6 1.6E-09 3.4E-14 102.7 -4.4 84 94-183 29-112 (1255)
23 KOG3864 Uncharacterized conser 98.5 1.3E-07 2.8E-12 77.5 4.0 90 359-449 103-193 (221)
24 KOG3665 ZYG-1-like serine/thre 98.4 5.1E-07 1.1E-11 91.1 8.0 85 233-334 120-204 (699)
25 KOG4237 Extracellular matrix p 98.4 1.3E-07 2.9E-12 85.0 1.3 81 98-182 68-148 (498)
26 smart00256 FBOX A Receptor for 98.3 3.9E-07 8.5E-12 55.9 3.0 35 4-39 1-35 (41)
27 PF00646 F-box: F-box domain; 98.3 8.2E-08 1.8E-12 61.3 -0.4 36 2-38 4-39 (48)
28 COG5238 RNA1 Ran GTPase-activa 98.3 2.2E-05 4.7E-10 67.6 13.3 194 231-447 88-317 (388)
29 KOG0618 Serine/threonine phosp 98.3 2.1E-07 4.5E-12 92.6 0.4 39 378-417 448-486 (1081)
30 KOG2982 Uncharacterized conser 98.2 1.4E-06 3E-11 75.8 4.7 157 124-334 47-208 (418)
31 KOG0618 Serine/threonine phosp 98.2 5E-07 1.1E-11 89.9 1.1 267 97-425 241-517 (1081)
32 PRK15387 E3 ubiquitin-protein 98.1 2.5E-06 5.4E-11 86.7 4.3 262 97-453 201-465 (788)
33 KOG3864 Uncharacterized conser 98.1 2.3E-06 5.1E-11 70.2 2.9 64 359-422 127-191 (221)
34 KOG2982 Uncharacterized conser 98.0 3.3E-06 7.2E-11 73.4 3.5 38 380-418 222-260 (418)
35 PF14580 LRR_9: Leucine-rich r 98.0 1.5E-06 3.2E-11 71.9 1.3 38 233-270 111-149 (175)
36 KOG4237 Extracellular matrix p 98.0 1.7E-06 3.7E-11 78.1 1.3 106 65-183 68-173 (498)
37 PRK15387 E3 ubiquitin-protein 98.0 1.2E-05 2.6E-10 81.8 7.3 21 380-401 443-463 (788)
38 PF14580 LRR_9: Leucine-rich r 98.0 3.4E-06 7.3E-11 69.8 2.3 57 359-418 66-124 (175)
39 COG5238 RNA1 Ran GTPase-activa 97.8 0.00056 1.2E-08 59.2 12.5 169 257-442 88-282 (388)
40 PF13855 LRR_8: Leucine rich r 97.6 3E-05 6.5E-10 52.2 1.6 60 382-443 1-60 (61)
41 KOG4658 Apoptotic ATPase [Sign 97.5 0.00011 2.5E-09 76.5 5.4 62 120-184 543-605 (889)
42 smart00367 LRR_CC Leucine-rich 97.5 0.00015 3.2E-09 39.0 2.9 25 431-455 1-25 (26)
43 KOG4658 Apoptotic ATPase [Sign 97.4 7.1E-05 1.5E-09 78.0 2.6 38 146-184 543-581 (889)
44 smart00367 LRR_CC Leucine-rich 97.1 0.00039 8.5E-09 37.3 1.9 22 382-403 2-23 (26)
45 PRK15370 E3 ubiquitin-protein 96.9 0.004 8.8E-08 64.1 9.3 53 122-184 199-251 (754)
46 PF13855 LRR_8: Leucine rich r 96.9 0.00026 5.6E-09 47.6 0.0 59 97-158 1-59 (61)
47 KOG1859 Leucine-rich repeat pr 96.6 0.00024 5.1E-09 69.8 -2.3 173 232-443 106-290 (1096)
48 PRK15370 E3 ubiquitin-protein 96.6 0.021 4.6E-07 58.9 11.3 179 64-298 199-378 (754)
49 KOG0617 Ras suppressor protein 96.5 7.4E-05 1.6E-09 59.8 -5.4 80 97-184 33-112 (264)
50 KOG4308 LRR-containing protein 96.4 0.0018 3.9E-08 63.0 2.6 196 237-459 89-316 (478)
51 KOG4308 LRR-containing protein 96.4 0.0057 1.2E-07 59.6 5.7 84 99-185 89-183 (478)
52 KOG1259 Nischarin, modulator o 96.3 0.0011 2.4E-08 58.2 0.4 151 260-443 283-438 (490)
53 KOG0472 Leucine-rich repeat pr 96.3 0.00026 5.7E-09 64.6 -3.6 39 403-443 501-539 (565)
54 KOG2739 Leucine-rich acidic nu 96.3 0.0014 3E-08 56.6 0.9 91 233-335 63-153 (260)
55 KOG1859 Leucine-rich repeat pr 96.2 0.0027 5.9E-08 62.7 2.5 75 359-443 189-265 (1096)
56 KOG2123 Uncharacterized conser 96.0 0.0026 5.5E-08 55.5 1.0 103 63-180 18-123 (388)
57 KOG2739 Leucine-rich acidic nu 95.9 0.0026 5.6E-08 55.0 0.5 87 95-185 41-127 (260)
58 PF12799 LRR_4: Leucine Rich r 95.9 0.013 2.7E-07 36.1 3.4 38 382-422 1-38 (44)
59 KOG2123 Uncharacterized conser 95.5 0.0048 1E-07 53.8 0.6 114 325-456 19-138 (388)
60 PF12799 LRR_4: Leucine Rich r 95.4 0.033 7.2E-07 34.2 4.0 37 407-447 1-38 (44)
61 PRK15386 type III secretion pr 95.3 0.023 4.9E-07 53.6 4.5 163 233-451 50-219 (426)
62 PF13516 LRR_6: Leucine Rich r 95.3 0.014 3.1E-07 30.5 1.8 24 431-455 1-24 (24)
63 PLN03150 hypothetical protein; 95.2 0.031 6.6E-07 57.1 5.5 37 379-416 463-499 (623)
64 PLN03215 ascorbic acid mannose 95.1 0.015 3.3E-07 54.0 2.8 36 2-37 5-40 (373)
65 KOG1259 Nischarin, modulator o 95.1 0.016 3.6E-07 51.1 2.7 59 94-158 304-362 (490)
66 PLN03150 hypothetical protein; 94.7 0.059 1.3E-06 55.1 5.9 82 359-443 420-501 (623)
67 KOG0472 Leucine-rich repeat pr 94.6 0.0013 2.9E-08 60.1 -5.3 127 121-272 182-308 (565)
68 KOG0281 Beta-TrCP (transducin 94.4 0.024 5.2E-07 50.7 2.0 39 1-40 75-117 (499)
69 KOG2997 F-box protein FBX9 [Ge 94.2 0.021 4.6E-07 50.6 1.2 39 1-39 107-149 (366)
70 PRK15386 type III secretion pr 93.9 0.16 3.5E-06 48.0 6.5 32 235-271 156-187 (426)
71 KOG4579 Leucine-rich repeat (L 93.0 0.088 1.9E-06 41.1 2.7 34 381-416 76-109 (177)
72 PF13516 LRR_6: Leucine Rich r 92.5 0.1 2.2E-06 27.1 1.8 21 382-403 2-22 (24)
73 KOG1644 U2-associated snRNP A' 91.7 0.12 2.6E-06 43.3 2.1 62 119-183 61-122 (233)
74 smart00368 LRR_RI Leucine rich 91.5 0.29 6.3E-06 26.6 2.9 26 432-458 2-27 (28)
75 PF13013 F-box-like_2: F-box-l 91.5 0.2 4.3E-06 37.6 2.9 29 1-30 22-50 (109)
76 KOG1644 U2-associated snRNP A' 90.1 0.24 5.1E-06 41.5 2.4 82 359-443 66-151 (233)
77 KOG0617 Ras suppressor protein 89.5 0.012 2.6E-07 47.5 -5.3 55 121-181 32-86 (264)
78 COG4886 Leucine-rich repeat (L 88.9 0.49 1.1E-05 45.6 4.2 36 404-442 252-287 (394)
79 COG4886 Leucine-rich repeat (L 88.1 0.51 1.1E-05 45.5 3.7 79 97-184 116-196 (394)
80 PF13306 LRR_5: Leucine rich r 87.7 0.14 3E-06 40.3 -0.4 8 408-415 104-111 (129)
81 PF13306 LRR_5: Leucine rich r 80.8 0.43 9.4E-06 37.4 -0.4 59 378-441 54-112 (129)
82 KOG0274 Cdc4 and related F-box 79.2 0.76 1.6E-05 45.8 0.6 37 1-38 108-144 (537)
83 KOG0531 Protein phosphatase 1, 78.6 1.1 2.3E-05 43.5 1.5 82 94-184 115-196 (414)
84 KOG3735 Tropomodulin and leiom 75.0 6 0.00013 36.1 5.0 31 349-379 189-220 (353)
85 PF13504 LRR_7: Leucine rich r 74.9 2.8 6.2E-05 19.6 1.6 10 408-417 2-11 (17)
86 PF07723 LRR_2: Leucine Rich R 71.4 3.2 7E-05 22.0 1.5 25 237-261 2-26 (26)
87 KOG4579 Leucine-rich repeat (L 65.8 4.5 9.8E-05 32.0 1.9 88 57-158 46-133 (177)
88 KOG3926 F-box proteins [Amino 65.3 5.7 0.00012 34.9 2.6 38 1-38 202-239 (332)
89 KOG0531 Protein phosphatase 1, 63.9 3.3 7.1E-05 40.2 1.1 105 323-444 93-198 (414)
90 KOG3763 mRNA export factor TAP 57.7 18 0.00038 35.7 4.7 91 231-332 214-308 (585)
91 KOG3735 Tropomodulin and leiom 52.1 31 0.00067 31.7 5.0 98 251-366 188-292 (353)
92 KOG3763 mRNA export factor TAP 49.4 36 0.00078 33.7 5.3 71 89-161 210-283 (585)
93 PF03382 DUF285: Mycoplasma pr 43.9 28 0.0006 26.9 3.1 17 140-157 53-69 (120)
94 PF03382 DUF285: Mycoplasma pr 38.2 30 0.00065 26.6 2.6 9 255-263 80-88 (120)
95 PF00560 LRR_1: Leucine Rich R 34.2 27 0.00059 17.4 1.2 12 409-421 2-13 (22)
96 PF07735 FBA_2: F-box associat 33.1 1.3E+02 0.0027 20.3 4.8 54 235-294 11-69 (70)
97 smart00369 LRR_TYP Leucine-ric 22.6 98 0.0021 15.8 2.1 9 408-416 3-11 (26)
98 smart00370 LRR Leucine-rich re 22.6 98 0.0021 15.8 2.1 9 408-416 3-11 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=2e-39 Score=286.60 Aligned_cols=372 Identities=25% Similarity=0.406 Sum_probs=227.2
Q ss_pred CCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccceEEeccC------CCCchhHHHHHHhhCCCccEEEeecccc
Q 012255 3 TLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCG------LDPVNEALTSLCNRFGNLTKVEISYAGW 76 (467)
Q Consensus 3 ~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 76 (467)
.||+|++..||++|+ .+.+++++.+|+.|+..+.....|-.++-. ..++++.+...+. ..|+.|.+++.
T Consensus 74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcg--g~lk~LSlrG~-- 148 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCG--GFLKELSLRGC-- 148 (483)
T ss_pred cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhc--ccccccccccc--
Confidence 699999999999994 999999999999999886555444444311 1112222111111 23444444422
Q ss_pred cccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHh-cCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEec
Q 012255 77 MSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLA-SCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHL 155 (467)
Q Consensus 77 ~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 155 (467)
..+.+..+..+..+||++++|.+.+|.+++|..+..++ .|++|++|++..|..+|+..+..+..+|
T Consensus 149 -----r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC-------- 215 (483)
T KOG4341|consen 149 -----RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC-------- 215 (483)
T ss_pred -----ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh--------
Confidence 22444444444445555555555555555554444444 4455555555544444444444444444
Q ss_pred cCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCC
Q 012255 156 IRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCE 235 (467)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (467)
++|+++.+++|+.+...++..+.. ++.
T Consensus 216 ------------------~kL~~lNlSwc~qi~~~gv~~~~r-----------------------------------G~~ 242 (483)
T KOG4341|consen 216 ------------------RKLKYLNLSWCPQISGNGVQALQR-----------------------------------GCK 242 (483)
T ss_pred ------------------hhHHHhhhccCchhhcCcchHHhc-----------------------------------cch
Confidence 455555555554444444443332 333
Q ss_pred CcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHH
Q 012255 236 NMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDE 315 (467)
Q Consensus 236 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 315 (467)
+++.+...||.....+.+..+...++.+.++++..|..+++.++..+..+|..|+.+..++|. .+++.
T Consensus 243 ~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t------------~~~d~ 310 (483)
T KOG4341|consen 243 ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT------------DITDE 310 (483)
T ss_pred hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC------------CCchH
Confidence 344444445555555555555556666666666666666666666666666666666666654 56666
Q ss_pred HHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHH-hCCCCCEEeecCCC
Q 012255 316 SLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALC-SAHYLEILELARCQ 393 (467)
Q Consensus 316 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~c~ 393 (467)
.+.++..++++|+.|.+..| ..+++.++..+..+|+ |+.+++.+|..+.+..+..++ +|+.|+.|.+++|.
T Consensus 311 ~l~aLg~~~~~L~~l~l~~c-------~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 311 VLWALGQHCHNLQVLELSGC-------QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred HHHHHhcCCCceEEEecccc-------chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 66666666667777766663 5566666666666666 777777666666666666666 57777777777777
Q ss_pred CcCHHHHHHhcC----CCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHHhhcccccccc
Q 012255 394 EISDEGLQLACQ----FPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQDLS 464 (467)
Q Consensus 394 ~it~~~~~~l~~----~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~~l~ 464 (467)
.+||+++..+.. ...|+.+++.+|+.+++..+.++..|++|+.+++.+|..++++++..+..+++.+....
T Consensus 384 ~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 384 LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 777777666652 45677777777777777777777777777777777777777777777777777665543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.97 E-value=3.2e-31 Score=234.80 Aligned_cols=305 Identities=27% Similarity=0.443 Sum_probs=255.8
Q ss_pred CchhHHHHHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHh-cCCCCceeec
Q 012255 51 PVNEALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLA-SCLNLSTLKL 129 (467)
Q Consensus 51 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l 129 (467)
.....+..+...+|++++|.+.+. ..+++..+..+.+.|+.|++|++..|..+++..+..++ .|++|++|++
T Consensus 151 v~~sslrt~~~~CpnIehL~l~gc-------~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNl 223 (483)
T KOG4341|consen 151 VGDSSLRTFASNCPNIEHLALYGC-------KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNL 223 (483)
T ss_pred CCcchhhHHhhhCCchhhhhhhcc-------eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhh
Confidence 346678889999999999988755 46999999999999999999999999999999999888 8999999999
Q ss_pred cCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccccccccccc
Q 012255 130 KFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEV 209 (467)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 209 (467)
++|+.++..++..+.++|++++.+...+|.......+...-
T Consensus 224 Swc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~--------------------------------------- 264 (483)
T KOG4341|consen 224 SWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA--------------------------------------- 264 (483)
T ss_pred ccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh---------------------------------------
Confidence 99999999999988888888887777777544433222221
Q ss_pred ccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCC
Q 012255 210 DVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKL 289 (467)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 289 (467)
..++-+..+++..|..+++..+..+...|..|+.|..++|.++++..+.++.+++++|
T Consensus 265 ----------------------~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 265 ----------------------AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred ----------------------ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 2334444555556666777777777777888888888888888888888888889999
Q ss_pred CeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccc
Q 012255 290 RSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVY 368 (467)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~ 368 (467)
+.+.+.+|. .+++.++..++.+|+.|+.+++..| .-.++..+..++.+|+ |+.+++++|.
T Consensus 323 ~~l~l~~c~------------~fsd~~ft~l~rn~~~Le~l~~e~~-------~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 323 QVLELSGCQ------------QFSDRGFTMLGRNCPHLERLDLEEC-------GLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred EEEeccccc------------hhhhhhhhhhhcCChhhhhhccccc-------ceehhhhHhhhccCCchhccCChhhhh
Confidence 999999877 7888889999989999999999884 5566667888888999 9999999999
Q ss_pred cccHHHHHHHHh----CCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhc-CCCCCeeccCCC
Q 012255 369 SFNDVGMEALCS----AHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVG-SHKLDLLAVEDC 442 (467)
Q Consensus 369 ~~~~~~~~~l~~----~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c 442 (467)
.++|++++.+.. ...|+.+++++|+.++|..++.+..|++|+.+++.+|..++.+++..+.. +|+++...+-.-
T Consensus 384 ~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 384 LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence 999999888873 57899999999999999999999999999999999999999999999997 999887766443
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.2e-25 Score=186.65 Aligned_cols=147 Identities=23% Similarity=0.345 Sum_probs=84.7
Q ss_pred CCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccceEEeccCCCCch-hHHHHHHhhC-----------------
Q 012255 2 DTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVN-EALTSLCNRF----------------- 63 (467)
Q Consensus 2 ~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~----------------- 63 (467)
+.|||||+..||+-|+ .+++.+++.|||||+++.+..+.|...+....+.. ..+.++.++-
T Consensus 99 ~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prla 177 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLA 177 (419)
T ss_pred ccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhh
Confidence 6899999999999998 99999999999999999988888888776544332 2333333321
Q ss_pred -------CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCC
Q 012255 64 -------GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRIT 136 (467)
Q Consensus 64 -------~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 136 (467)
.+|++++++. ..++...+..+...|..|+.|++.+. .+.|.....++...+|+.|+++.|.+++
T Consensus 178 e~~~~frsRlq~lDLS~--------s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 178 EHFSPFRSRLQHLDLSN--------SVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhhhhhhhhhHHhhcch--------hheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccc
Confidence 1233334331 12344444444444444444444443 3444333444444444444444444444
Q ss_pred hhhHHHHHhcCCCCcEEeccCC
Q 012255 137 GCGILSVVVGCKNLTVLHLIRC 158 (467)
Q Consensus 137 ~~~l~~~~~~~~~L~~L~l~~~ 158 (467)
..++..++++|+.|.+|++++|
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHh
Confidence 4444444444444444444444
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=157.51 Aligned_cols=208 Identities=27% Similarity=0.443 Sum_probs=156.4
Q ss_pred ccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCC
Q 012255 231 RVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPL 310 (467)
Q Consensus 231 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 310 (467)
...+++|+.|+++.+..+++.++..+...|++|++|.+.+|..+++.++..+...|++|++|++..|.
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~------------ 306 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH------------ 306 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc------------
Confidence 34678999999998887888999988888999999998888878999999999999999999999987
Q ss_pred CCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhC--CCcEeeccccccccHHHHHHHHhCCCCC-EE
Q 012255 311 RLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKC--PVRELSLDYVYSFNDVGMEALCSAHYLE-IL 387 (467)
Q Consensus 311 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L 387 (467)
.+++.++..+...||+|+.|.+..+.+ |..+++.++..+.... .+..+.+.+|..+++..+.... ..... .+
T Consensus 307 ~~~d~~l~~~~~~c~~l~~l~~~~~~~----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~ 381 (482)
T KOG1947|consen 307 GLTDSGLEALLKNCPNLRELKLLSLNG----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLEL 381 (482)
T ss_pred cchHHHHHHHHHhCcchhhhhhhhcCC----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHH
Confidence 678888888888899988888766322 2345555554444443 1555555555555555554444 22222 45
Q ss_pred eecCCCCcCHHHHHHhc-CCCCCCEEeecCCCCCCccchHhhhc-CCCCCeeccCCCCCCCHHHHHHHHhh
Q 012255 388 ELARCQEISDEGLQLAC-QFPHLSILRLRKCLGVTDDGLKPLVG-SHKLDLLAVEDCPQVSERGVQGAARS 456 (467)
Q Consensus 388 ~l~~c~~it~~~~~~l~-~~~~L~~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c~~~~~~~~~~l~~~ 456 (467)
.+.+|..++ ..+.... .+..++.|.+..|..+|+.++..... +.+++.+.+.+|+.++...+..+...
T Consensus 382 ~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 382 SLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred HhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 566777776 5555444 34448999999999999999999988 89999999999999999888766654
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.4e-17 Score=139.90 Aligned_cols=203 Identities=21% Similarity=0.322 Sum_probs=172.0
Q ss_pred CCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCC
Q 012255 234 CENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLT 313 (467)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 313 (467)
-..|+++++++.. ++...+..+++.|..|+.|.+++.. ++|.....++ .-.+|+.|+++.|. .++
T Consensus 184 rsRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iA-kN~~L~~lnlsm~s------------G~t 248 (419)
T KOG2120|consen 184 RSRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIA-KNSNLVRLNLSMCS------------GFT 248 (419)
T ss_pred hhhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHh-ccccceeecccccc------------ccc
Confidence 3579999999875 7778888999999999999999875 7666666665 45899999999977 899
Q ss_pred HHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC--CcEeeccccc-cccHHHHHHHH-hCCCCCEEee
Q 012255 314 DESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP--VRELSLDYVY-SFNDVGMEALC-SAHYLEILEL 389 (467)
Q Consensus 314 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~-~~~~~~~~~l~-~~~~L~~L~l 389 (467)
..++..+...|..|.+|++++| ...++. +..+..+.. |+.|+++|+. ++.+..+..+. .||+|.+|++
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc-------~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWC-------FLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHh-------hccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 9999999999999999999995 333443 555555544 9999999974 45666777777 6999999999
Q ss_pred cCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHHhhccccc
Q 012255 390 ARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQ 461 (467)
Q Consensus 390 ~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~ 461 (467)
+.|..+++..++.+.+++.|++|.++.|..|..+.+-++...|.|..|++.+| +++.+++-+-+.|+.++
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 99999999999999999999999999999999888888888999999999999 68888888888777754
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=5.2e-16 Score=166.38 Aligned_cols=341 Identities=18% Similarity=0.079 Sum_probs=156.9
Q ss_pred HHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCCh
Q 012255 58 SLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITG 137 (467)
Q Consensus 58 ~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 137 (467)
.....+++|+.|+++..... ..+. ..+...+++|++|+++++ +++... ..+.+++|++|+++++. ++.
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~----~~ip----~~~~~~l~~L~~L~Ls~n-~l~~~~--p~~~l~~L~~L~Ls~n~-~~~ 154 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLS----GPIP----DDIFTTSSSLRYLNLSNN-NFTGSI--PRGSIPNLETLDLSNNM-LSG 154 (968)
T ss_pred hHHhCCCCCCEEECCCCccC----CcCC----hHHhccCCCCCEEECcCC-cccccc--CccccCCCCEEECcCCc-ccc
Confidence 34567788888888754321 1122 223345677777777766 332210 11245677777777652 221
Q ss_pred hhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccccccccccccccccccc
Q 012255 138 CGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMK 217 (467)
Q Consensus 138 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 217 (467)
.++..+..+++|++|++.++ .+... ....+.++++|++|++.++.-... +......+++|+.|.+....-..
T Consensus 155 -~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~--- 226 (968)
T PLN00113 155 -EIPNDIGSFSSLKVLDLGGN-VLVGK-IPNSLTNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYLGYNNLSG--- 226 (968)
T ss_pred -cCChHHhcCCCCCEEECccC-ccccc-CChhhhhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEECcCCccCC---
Confidence 12233446777777777766 32221 334556667777777766532111 11112334556666554332100
Q ss_pred chhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccC
Q 012255 218 VYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVP 297 (467)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (467)
.++.....+++|++|+++++. ... .+...+..+++|++|.++++. +.......+ ..+++|++|+++.|
T Consensus 227 --------~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n 294 (968)
T PLN00113 227 --------EIPYEIGGLTSLNHLDLVYNN-LTG-PIPSSLGNLKNLQYLFLYQNK-LSGPIPPSI-FSLQKLISLDLSDN 294 (968)
T ss_pred --------cCChhHhcCCCCCEEECcCce-ecc-ccChhHhCCCCCCEEECcCCe-eeccCchhH-hhccCcCEEECcCC
Confidence 011112344556666665543 111 122223455555665555543 221111111 23455555555544
Q ss_pred CCCCccc-----------cccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeecc
Q 012255 298 SDFSLPI-----------LMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLD 365 (467)
Q Consensus 298 ~~~~~~~-----------~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~ 365 (467)
....... +.-..+.++......+. .+++|+.|++.+| .++...-.. ....+ |+.|+++
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n--------~l~~~~p~~-l~~~~~L~~L~Ls 364 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSN--------KFSGEIPKN-LGKHNNLTVLDLS 364 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCC--------CCcCcCChH-HhCCCCCcEEECC
Confidence 2100000 00000011111111111 3455555555441 222111111 11223 5556655
Q ss_pred ccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 366 YVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
++. ++......+..+++|+.|+++++ .++......+.++++|+.|++++|. ++......+..+++|+.|++++|.
T Consensus 365 ~n~-l~~~~p~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 365 TNN-LTGEIPEGLCSSGNLFKLILFSN-SLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCe-eEeeCChhHhCcCCCCEEECcCC-EecccCCHHHhCCCCCCEEECcCCE-eeeECChhHhcCCCCCEEECcCCc
Confidence 542 22222223334556666666653 3333333455567788888888753 665555556667888888888775
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=1.1e-15 Score=163.89 Aligned_cols=344 Identities=15% Similarity=0.150 Sum_probs=148.3
Q ss_pred HHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChh
Q 012255 59 LCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGC 138 (467)
Q Consensus 59 ~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~ 138 (467)
+...+++|++|+++..+... .+.. ...++|++|+++++ .++......++.+++|++|+++++. ++.
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~----~~p~-------~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~-l~~- 178 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTG----SIPR-------GSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNV-LVG- 178 (968)
T ss_pred HhccCCCCCEEECcCCcccc----ccCc-------cccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCc-ccc-
Confidence 34577889999998654311 0111 13466666666655 3333333345556666666666542 211
Q ss_pred hHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccccccccccccccccccc-
Q 012255 139 GILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMK- 217 (467)
Q Consensus 139 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 217 (467)
.++..+..+++|++|++.++ .+... ....++.+++|+.|++.++. +... +......+++|+.|.+..+.-....+
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASN-QLVGQ-IPRELGQMKSLKWIYLGYNN-LSGE-IPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred cCChhhhhCcCCCeeeccCC-CCcCc-CChHHcCcCCccEEECcCCc-cCCc-CChhHhcCCCCCEEECcCceeccccCh
Confidence 11222335556666666555 22211 23344455555555554432 1110 00011223344444433221000000
Q ss_pred ch------------hhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHh
Q 012255 218 VY------------DRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQT 285 (467)
Q Consensus 218 ~~------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 285 (467)
.+ .......++.....+++|++|+++++. ... .+...+..+++|+.|+++++. +..... .....
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~~L~~L~l~~n~-~~~~~~-~~~~~ 330 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-LSG-EIPELVIQLQNLEILHLFSNN-FTGKIP-VALTS 330 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-ecc-CCChhHcCCCCCcEEECCCCc-cCCcCC-hhHhc
Confidence 00 000000111112345667777776654 221 122334566777777777654 322211 22235
Q ss_pred CCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCC--CCc--------------cccccHHH
Q 012255 286 SSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGE--FPS--------------ISSFTLDG 349 (467)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~--------------~~~~~~~~ 349 (467)
+++|+.|++.+|. +....-..+. .+++|+.|+++++.-. .+. .+.+...
T Consensus 331 l~~L~~L~L~~n~-------------l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~- 395 (968)
T PLN00113 331 LPRLQVLQLWSNK-------------FSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE- 395 (968)
T ss_pred CCCCCEEECcCCC-------------CcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc-
Confidence 6777777777654 2211111222 5677777777663100 000 0111110
Q ss_pred HHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhh
Q 012255 350 ILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPL 428 (467)
Q Consensus 350 ~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l 428 (467)
+......++ |+.|+++++. ++......+.++++|+.|+++++ .++......+..+++|+.|++++|. ++..... .
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~p~-~ 471 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQMLSLARNK-FFGGLPD-S 471 (968)
T ss_pred CCHHHhCCCCCCEEECcCCE-eeeECChhHhcCCCCCEEECcCC-cccCccChhhccCCCCcEEECcCce-eeeecCc-c
Confidence 001112233 5555555542 22222223334555555555553 3333222223345666666666643 3321111 1
Q ss_pred hcCCCCCeeccCCCC
Q 012255 429 VGSHKLDLLAVEDCP 443 (467)
Q Consensus 429 ~~~~~L~~L~l~~c~ 443 (467)
...++|+.|++++|.
T Consensus 472 ~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 472 FGSKRLENLDLSRNQ 486 (968)
T ss_pred cccccceEEECcCCc
Confidence 124567777777775
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=7.1e-14 Score=130.65 Aligned_cols=82 Identities=28% Similarity=0.317 Sum_probs=42.6
Q ss_pred CcEeeccccccccHHHHHHHHh-----CCCCCEEeecCCCCcCHHHHHHh----cCCCCCCEEeecCCCCCCccchHhhh
Q 012255 359 VRELSLDYVYSFNDVGMEALCS-----AHYLEILELARCQEISDEGLQLA----CQFPHLSILRLRKCLGVTDDGLKPLV 429 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~c~~it~~~~~~l----~~~~~L~~L~l~~c~~it~~~~~~l~ 429 (467)
|+.|+++++ .+++.++..+.. .+.|++|++++| .+++.+...+ ..+++|+.+++++ +.+++.+...++
T Consensus 223 L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~ 299 (319)
T cd00116 223 LEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLA 299 (319)
T ss_pred CCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHH
Confidence 555555553 344444444331 256666666664 4544333322 2456666666666 346666555554
Q ss_pred c----C-CCCCeeccCCCC
Q 012255 430 G----S-HKLDLLAVEDCP 443 (467)
Q Consensus 430 ~----~-~~L~~L~l~~c~ 443 (467)
. . +.|+++++.+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 300 ESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhhcCCchhhcccCCCC
Confidence 3 2 466666665543
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=5.2e-14 Score=131.58 Aligned_cols=198 Identities=24% Similarity=0.262 Sum_probs=120.2
Q ss_pred CCCcceeeccccCccC--chhHHHHHhcCCCCcEEEcccCcccchhHHHHH---HHhC-CCCCeeeeccCCCCCcccccc
Q 012255 234 CENMVELSLKNCIISP--GRGLACVLGKCRNLEKIHLDMCVGVRDSDIINM---AQTS-SKLRSISLRVPSDFSLPILMS 307 (467)
Q Consensus 234 ~~~L~~L~l~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~~ 307 (467)
+++|+.|+++++.... ...+..+... ++|++|+++++. +.+.+...+ ...+ ++|+.|++.+|.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~--------- 148 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR--------- 148 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc---------
Confidence 4455566655544221 1122222223 446666666654 443333322 2233 666777777653
Q ss_pred CCCCCCHHHHH---HHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHH---hCC-CcEeeccccccccHHHHHHHH-
Q 012255 308 NPLRLTDESLK---ALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQ---KCP-VRELSLDYVYSFNDVGMEALC- 379 (467)
Q Consensus 308 ~~~~~~~~~l~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~---~~~-L~~L~l~~~~~~~~~~~~~l~- 379 (467)
++..+.. .....+++|+.|++.+ +.+++.++..+.. ..+ |+.|++++| .+++.+...+.
T Consensus 149 ----l~~~~~~~~~~~~~~~~~L~~L~l~~--------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~ 215 (319)
T cd00116 149 ----LEGASCEALAKALRANRDLKELNLAN--------NGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAE 215 (319)
T ss_pred ----CCchHHHHHHHHHHhCCCcCEEECcC--------CCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHH
Confidence 3322222 2223456677777766 4555554444432 223 777777775 45555444333
Q ss_pred ---hCCCCCEEeecCCCCcCHHHHHHhcC-----CCCCCEEeecCCCCCCccchHhhhc----CCCCCeeccCCCCCCCH
Q 012255 380 ---SAHYLEILELARCQEISDEGLQLACQ-----FPHLSILRLRKCLGVTDDGLKPLVG----SHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 380 ---~~~~L~~L~l~~c~~it~~~~~~l~~-----~~~L~~L~l~~c~~it~~~~~~l~~----~~~L~~L~l~~c~~~~~ 447 (467)
.+++|+.|++++| .+++.++..+.. .+.|+.|++.+| .+++.+...+.. +++|+.++++++. +++
T Consensus 216 ~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~ 292 (319)
T cd00116 216 TLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGE 292 (319)
T ss_pred HhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcH
Confidence 5789999999996 688877776652 379999999997 588766665553 7799999999996 999
Q ss_pred HHHHHHHhhcc
Q 012255 448 RGVQGAARSVS 458 (467)
Q Consensus 448 ~~~~~l~~~~~ 458 (467)
++...+++..+
T Consensus 293 ~~~~~~~~~~~ 303 (319)
T cd00116 293 EGAQLLAESLL 303 (319)
T ss_pred HHHHHHHHHHh
Confidence 98888877554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=3.1e-16 Score=145.70 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=28.2
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeecc
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAV 439 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l 439 (467)
+..+++|++|.+.+ +.+....-.++.+++.|++|++.+ +-|-.....++..+ .|++|.+
T Consensus 388 f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccc-hhhhhhh
Confidence 33455555555555 344444444555555555555555 23444333334333 4444433
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.56 E-value=3.4e-14 Score=140.91 Aligned_cols=257 Identities=30% Similarity=0.470 Sum_probs=178.5
Q ss_pred cCCCCcEEeccCCcccCchHHH-HHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhh
Q 012255 146 GCKNLTVLHLIRCLNVNSVEWL-EYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAV 224 (467)
Q Consensus 146 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (467)
.+..++.+....+......... .....++.|+.+.+.+|..+++.++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~----------------------------- 209 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDAL----------------------------- 209 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHH-----------------------------
Confidence 3444455555444333222222 2333457777777777766666544433
Q ss_pred hhhhhcccCCCCcceeeccc-cCccCc--hhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCC
Q 012255 225 DRWQRQRVPCENMVELSLKN-CIISPG--RGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFS 301 (467)
Q Consensus 225 ~~~~~~~~~~~~L~~L~l~~-~~~~~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (467)
...+++|+.|++++ +..... .....+...|++|+.|.++++..+++.++..+...|++|++|.+.+|.
T Consensus 210 ------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~--- 280 (482)
T KOG1947|consen 210 ------ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS--- 280 (482)
T ss_pred ------HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC---
Confidence 23566777777765 222222 223345677889999999988778888888888889999999988876
Q ss_pred ccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeecccc---ccccHHHHHH
Q 012255 302 LPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYV---YSFNDVGMEA 377 (467)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~---~~~~~~~~~~ 377 (467)
.+++.++..++..||+|++|++++| ..+++.++..+...|+ ++.|.+..+ ..+++..+..
T Consensus 281 ---------~lt~~gl~~i~~~~~~L~~L~l~~c-------~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 281 ---------NLTDEGLVSIAERCPSLRELDLSGC-------HGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred ---------ccchhHHHHHHHhcCcccEEeeecC-------ccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 5899999999999999999999984 6778888888888888 777655543 4566666666
Q ss_pred HHhCC--CCCEEeecCCCCcCHHHHHHhcCCCCCC-EEeecCCCCCCccchHhhhc-CCCCCeeccCCCCCCCHHHHHHH
Q 012255 378 LCSAH--YLEILELARCQEISDEGLQLACQFPHLS-ILRLRKCLGVTDDGLKPLVG-SHKLDLLAVEDCPQVSERGVQGA 453 (467)
Q Consensus 378 l~~~~--~L~~L~l~~c~~it~~~~~~l~~~~~L~-~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c~~~~~~~~~~l 453 (467)
+.... .++.+.+.+|..+++..+.... ..... .+.+.+|+.++ ..+..... +..++.|.+..|..+++..+...
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHH
Confidence 55432 6777777777777777776665 33333 57777888887 66666555 55589999999999999999998
Q ss_pred Hhhcc
Q 012255 454 ARSVS 458 (467)
Q Consensus 454 ~~~~~ 458 (467)
...+.
T Consensus 423 ~~~~~ 427 (482)
T KOG1947|consen 423 ADSCS 427 (482)
T ss_pred hhhhh
Confidence 76543
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.51 E-value=2.7e-15 Score=139.53 Aligned_cols=249 Identities=15% Similarity=0.098 Sum_probs=140.7
Q ss_pred CCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhh
Q 012255 148 KNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRW 227 (467)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 227 (467)
.++++|+|.++ .+++. -...+..+.+|..|.+++. .++..... .+..+++|+.|.+....- .-.
T Consensus 173 ~ni~~L~La~N-~It~l-~~~~F~~lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN~i------------riv 236 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITTL-ETGHFDSLNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRNRI------------RIV 236 (873)
T ss_pred CCceEEeeccc-ccccc-ccccccccchheeeecccC-cccccCHH-Hhhhcchhhhhhccccce------------eee
Confidence 35666666655 44443 2233444445555555543 33332222 224456666666554320 000
Q ss_pred hhc-ccCCCCcceeeccccC--ccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccc
Q 012255 228 QRQ-RVPCENMVELSLKNCI--ISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPI 304 (467)
Q Consensus 228 ~~~-~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 304 (467)
... +...++|+.|.+.... ..++.. +-.|.++++|+++... +....-. ...+++.|+.|+++...
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N~-l~~vn~g-~lfgLt~L~~L~lS~Na------ 304 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETNR-LQAVNEG-WLFGLTSLEQLDLSYNA------ 304 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcc----eeeecccceeecccch-hhhhhcc-cccccchhhhhccchhh------
Confidence 000 4456667766665443 112211 2246677777777543 2211111 12356778887776532
Q ss_pred cccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHHHHHHhCCCC
Q 012255 305 LMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYL 384 (467)
Q Consensus 305 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 384 (467)
+......... .|++|+.|++++ +.++.-.-..+.....|+.|.++++ .++...-..+..+++|
T Consensus 305 -------I~rih~d~Ws-ftqkL~~LdLs~--------N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL 367 (873)
T KOG4194|consen 305 -------IQRIHIDSWS-FTQKLKELDLSS--------NRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSL 367 (873)
T ss_pred -------hheeecchhh-hcccceeEeccc--------cccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhh
Confidence 2221111111 478999999987 4444322222222233888888885 4444333344467889
Q ss_pred CEEeecCCC---CcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 385 EILELARCQ---EISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 385 ~~L~l~~c~---~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
++|++.+.. .+.| +-.++.+++.|+.|++.+ +++....-+++..+++|+.|++.+++
T Consensus 368 ~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhcCcCCeEEEEEec-chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 999987621 2344 456677899999999999 67988888899999999999999986
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.37 E-value=2.2e-12 Score=139.12 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=102.0
Q ss_pred cCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCC
Q 012255 259 KCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGE 338 (467)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 338 (467)
.+++|+.|.++++..+.. +.....++++|+.|++.+|..+.. +... . .+++|+.|++++|
T Consensus 776 ~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~---------LP~~-----~-~L~sL~~L~Ls~c--- 835 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET---------LPTG-----I-NLESLESLDLSGC--- 835 (1153)
T ss_pred ccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe---------eCCC-----C-CccccCEEECCCC---
Confidence 457899999988764322 112234789999999999874321 1110 1 4689999999986
Q ss_pred CCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCC
Q 012255 339 FPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKC 417 (467)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 417 (467)
..+.. +..... ++.|+++++ .++. ....+..+++|+.|++++|..++.... .+..+++|+.+++++|
T Consensus 836 ----~~L~~-----~p~~~~nL~~L~Ls~n-~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 836 ----SRLRT-----FPDISTNISDLNLSRT-GIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDC 903 (1153)
T ss_pred ----Ccccc-----ccccccccCEeECCCC-CCcc-ChHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCC
Confidence 22211 111123 888998885 3432 123455789999999999988776332 3457889999999999
Q ss_pred CCCCccchHhh------------hcCCCCCeeccCCCCCCCHHHH
Q 012255 418 LGVTDDGLKPL------------VGSHKLDLLAVEDCPQVSERGV 450 (467)
Q Consensus 418 ~~it~~~~~~l------------~~~~~L~~L~l~~c~~~~~~~~ 450 (467)
.+++...+... ..+|....+.+.+|.+++..+.
T Consensus 904 ~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 904 GALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred cccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh
Confidence 88765432211 0144456667888888876664
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=2.2e-11 Score=107.18 Aligned_cols=201 Identities=25% Similarity=0.377 Sum_probs=147.4
Q ss_pred ccCCCCcceeeccccCcc--CchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHH------------hCCCCCeeeecc
Q 012255 231 RVPCENMVELSLKNCIIS--PGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQ------------TSSKLRSISLRV 296 (467)
Q Consensus 231 ~~~~~~L~~L~l~~~~~~--~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------~~~~L~~L~l~~ 296 (467)
...+|+|+.|+|++.-.- ....+..++++|..|++|.+.+|. +...+-..+.+ .-++||++...+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 457889999999975421 235577788999999999999986 65544433322 236888888876
Q ss_pred CCCCCccccccCCCCCCHHH---HHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHH---HHhCC-CcEeecccccc
Q 012255 297 PSDFSLPILMSNPLRLTDES---LKALADNCRMLESVRISFSDGEFPSISSFTLDGILTL---IQKCP-VRELSLDYVYS 369 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l---~~~~~-L~~L~l~~~~~ 369 (467)
.+ +.+.+ +....+.+|.|+.+++.. +++..+++..+ ++.|+ |+.|++.++ .
T Consensus 167 Nr-------------len~ga~~~A~~~~~~~~leevr~~q--------N~I~~eG~~al~eal~~~~~LevLdl~DN-t 224 (382)
T KOG1909|consen 167 NR-------------LENGGATALAEAFQSHPTLEEVRLSQ--------NGIRPEGVTALAEALEHCPHLEVLDLRDN-T 224 (382)
T ss_pred cc-------------cccccHHHHHHHHHhccccceEEEec--------ccccCchhHHHHHHHHhCCcceeeecccc-h
Confidence 43 44433 444455679999999987 67766666444 45688 999999995 5
Q ss_pred ccHHHHHHHH----hCCCCCEEeecCCCCcCHHHHHHh----c-CCCCCCEEeecCCCCCCccchHhhhc----CCCCCe
Q 012255 370 FNDVGMEALC----SAHYLEILELARCQEISDEGLQLA----C-QFPHLSILRLRKCLGVTDDGLKPLVG----SHKLDL 436 (467)
Q Consensus 370 ~~~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~~l----~-~~~~L~~L~l~~c~~it~~~~~~l~~----~~~L~~ 436 (467)
++.++-..++ .+++|+.|+++.|. +.+.+..++ . ..|+|+.|.+.+| .||.++...+.. .|.|+.
T Consensus 225 ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 225 FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEK 302 (382)
T ss_pred hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHH
Confidence 6666655555 57899999999985 444444433 3 4799999999995 599887766664 799999
Q ss_pred eccCCCCCC--CHHHHHHHHhhc
Q 012255 437 LAVEDCPQV--SERGVQGAARSV 457 (467)
Q Consensus 437 L~l~~c~~~--~~~~~~~l~~~~ 457 (467)
|++++|. + .++++..++...
T Consensus 303 LnLngN~-l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 303 LNLNGNR-LGEKDEGIDEIASKF 324 (382)
T ss_pred hcCCccc-ccccchhHHHHHHhc
Confidence 9999997 7 778888888766
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.28 E-value=1.9e-11 Score=132.03 Aligned_cols=291 Identities=18% Similarity=0.183 Sum_probs=154.4
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
.+|++|++.++ .+.. ....+..+++|+.|+++++..+.... . ...+++|+.|++.+|..+.. +...+..+++|
T Consensus 611 ~~L~~L~L~~s-~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L 683 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVE--LPSSIQYLNKL 683 (1153)
T ss_pred cCCcEEECcCc-cccc-cccccccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCccc--cchhhhccCCC
Confidence 34555555544 2221 11122355666666666554333221 1 23456677777766644432 34455666667
Q ss_pred cccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHH
Q 012255 177 EDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACV 256 (467)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l 256 (467)
+.|++.+|..+...... ..+++|+.|.+..+.... .++ ...++|+.|++++.. +. .++..
T Consensus 684 ~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~-----------~~p---~~~~nL~~L~L~~n~-i~--~lP~~ 743 (1153)
T PLN03210 684 EDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLK-----------SFP---DISTNISWLDLDETA-IE--EFPSN 743 (1153)
T ss_pred CEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCcc-----------ccc---cccCCcCeeecCCCc-cc--ccccc
Confidence 77776666544432110 124455555554332111 111 123466666666543 11 11111
Q ss_pred HhcCCCCcEEEcccCcc--cch--hHHH-HHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEE
Q 012255 257 LGKCRNLEKIHLDMCVG--VRD--SDII-NMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVR 331 (467)
Q Consensus 257 ~~~~~~L~~L~l~~~~~--~~~--~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~ 331 (467)
..+++|++|.+.++.. +.. ..+. .....+++|+.|++++|+.+. .+.. -..++++|+.|+
T Consensus 744 -~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~---------~lP~-----si~~L~~L~~L~ 808 (1153)
T PLN03210 744 -LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV---------ELPS-----SIQNLHKLEHLE 808 (1153)
T ss_pred -ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc---------ccCh-----hhhCCCCCCEEE
Confidence 1356666666655321 000 0000 011234678888888765221 1111 123678899999
Q ss_pred ecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHH-hCCCCCEEeecCCCCcCHHHHHHhcCCCCC
Q 012255 332 ISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALC-SAHYLEILELARCQEISDEGLQLACQFPHL 409 (467)
Q Consensus 332 l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~c~~it~~~~~~l~~~~~L 409 (467)
+.+| ..+... .... ..+ |+.|++++|..+.. +. ..++|+.|++++ ..++.. ...+..+++|
T Consensus 809 Ls~C-------~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~-n~i~~i-P~si~~l~~L 871 (1153)
T PLN03210 809 IENC-------INLETL--PTGI-NLESLESLDLSGCSRLRT-----FPDISTNISDLNLSR-TGIEEV-PWWIEKFSNL 871 (1153)
T ss_pred CCCC-------CCcCee--CCCC-CccccCEEECCCCCcccc-----ccccccccCEeECCC-CCCccC-hHHHhcCCCC
Confidence 9885 222210 0000 234 88999998866532 12 246788999987 455542 2346689999
Q ss_pred CEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCH
Q 012255 410 SILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 410 ~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~ 447 (467)
+.|++.+|++++.... .+..+++|+.+++++|..++.
T Consensus 872 ~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CEEECCCCCCcCccCc-ccccccCCCeeecCCCccccc
Confidence 9999999998886333 233488999999999988764
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=2.7e-09 Score=94.23 Aligned_cols=186 Identities=20% Similarity=0.291 Sum_probs=138.1
Q ss_pred HHHhcCCCCcEEEcccCcccch---hHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHH----------
Q 012255 255 CVLGKCRNLEKIHLDMCVGVRD---SDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALA---------- 321 (467)
Q Consensus 255 ~l~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~---------- 321 (467)
..+..||+|+.|++++.. +.. ..+..+...+..|++|.+.+|. +...+-..++
T Consensus 86 ~aL~~~~~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~G-------------lg~~ag~~l~~al~~l~~~k 151 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNCG-------------LGPEAGGRLGRALFELAVNK 151 (382)
T ss_pred HHHhcCCceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcCC-------------CChhHHHHHHHHHHHHHHHh
Confidence 344678899999999875 433 4566677889999999999986 3333322221
Q ss_pred --hcCCCCCeEEecccCCCCCccccccHH---HHHHHHHhCC-CcEeeccccccccHHHHHH----HHhCCCCCEEeecC
Q 012255 322 --DNCRMLESVRISFSDGEFPSISSFTLD---GILTLIQKCP-VRELSLDYVYSFNDVGMEA----LCSAHYLEILELAR 391 (467)
Q Consensus 322 --~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~ 391 (467)
..-|+|+.+..+. +.+.+. .+...++.+| |+.+.+..+ .|...++.. +..||+|+.|++..
T Consensus 152 k~~~~~~Lrv~i~~r--------Nrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 152 KAASKPKLRVFICGR--------NRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred ccCCCcceEEEEeec--------cccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc
Confidence 1358999999887 565554 4455567788 999999985 555555433 33699999999988
Q ss_pred CCCcCHHHHHHhc----CCCCCCEEeecCCCCCCccchHhhhc-----CCCCCeeccCCCCCCCHHHHHHHHhhcccccc
Q 012255 392 CQEISDEGLQLAC----QFPHLSILRLRKCLGVTDDGLKPLVG-----SHKLDLLAVEDCPQVSERGVQGAARSVSFRQD 462 (467)
Q Consensus 392 c~~it~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~~l~~-----~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~~ 462 (467)
+.++..+-.+++ .+++|+.|.+.+|. +.+.|..++.. .|+|+.|.+.+|. ++.++...++..+--.|+
T Consensus 223 -Ntft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 223 -NTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPD 299 (382)
T ss_pred -chhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchh
Confidence 567776655554 58899999999996 88888777764 8999999999997 999999888887766666
Q ss_pred cccc
Q 012255 463 LSWM 466 (467)
Q Consensus 463 l~~~ 466 (467)
|..+
T Consensus 300 L~kL 303 (382)
T KOG1909|consen 300 LEKL 303 (382)
T ss_pred hHHh
Confidence 6543
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.5e-10 Score=101.80 Aligned_cols=185 Identities=17% Similarity=0.096 Sum_probs=94.6
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
.|++++.|++++.-......+..++..+|+|+.|+++... +....-......+++|+.|.+++|. +
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CG-------------l 209 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCG-------------L 209 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCC-------------C
Confidence 4555555555554333344455556666666666666443 1100000011134667777777663 5
Q ss_pred CHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHh--CCCcEeeccccccccHHHHHHHHhCCCCCEEeec
Q 012255 313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQK--CPVRELSLDYVYSFNDVGMEALCSAHYLEILELA 390 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 390 (467)
++..+..+...+|+|+.|.+.. +. +........- +.|+.|+|+++..++.........+|.|+.|+++
T Consensus 210 s~k~V~~~~~~fPsl~~L~L~~--------N~--~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 210 SWKDVQWILLTFPSLEVLYLEA--------NE--IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred CHHHHHHHHHhCCcHHHhhhhc--------cc--ccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 6666666666677777777755 11 1111111111 2267777777666555555555567777777776
Q ss_pred CCCCcCHHHHHHh------cCCCCCCEEeecCCCCCCc-cchHhhhcCCCCCeeccCCCC
Q 012255 391 RCQEISDEGLQLA------CQFPHLSILRLRKCLGVTD-DGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 391 ~c~~it~~~~~~l------~~~~~L~~L~l~~c~~it~-~~~~~l~~~~~L~~L~l~~c~ 443 (467)
.| .+++...... ..++.|+.|++.. ++|.+ ..+.++...++|+.|.+...+
T Consensus 280 ~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 280 ST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccc
Confidence 64 3333222211 2466777777776 33432 233334335566665554443
No 18
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.88 E-value=9.6e-10 Score=69.74 Aligned_cols=37 Identities=30% Similarity=0.626 Sum_probs=32.5
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhh
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNE 38 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~ 38 (467)
|.+||+||+.+||+||+ ..|+.+++.|||+|+++...
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCC
Confidence 68999999999999996 99999999999999998644
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.6e-09 Score=98.36 Aligned_cols=188 Identities=13% Similarity=0.083 Sum_probs=137.9
Q ss_pred cCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCC
Q 012255 232 VPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLR 311 (467)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 311 (467)
....+|+.+.++++. +...+.......||+++.|++++.-.-.+..+..++..+|+|+.|+++......
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~---------- 186 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN---------- 186 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC----------
Confidence 355688888888876 555444456788999999999987655678888899999999999999865211
Q ss_pred CCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeec
Q 012255 312 LTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELA 390 (467)
Q Consensus 312 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 390 (467)
..+.. .....++|+.|.+.. ++++...+..+...+| ++.|.+.++..+..... ...-++.|+.|+|+
T Consensus 187 ~~~s~---~~~~l~~lK~L~l~~--------CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 187 FISSN---TTLLLSHLKQLVLNS--------CGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLS 254 (505)
T ss_pred Ccccc---chhhhhhhheEEecc--------CCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhcccc
Confidence 11111 111567999999999 4788889999999999 99999998743211111 11136789999999
Q ss_pred CCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhh------hcCCCCCeeccCCCC
Q 012255 391 RCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPL------VGSHKLDLLAVEDCP 443 (467)
Q Consensus 391 ~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l------~~~~~L~~L~l~~c~ 443 (467)
+...++-.-......+|.|+.|.++.|. +++...-.. ..+|+|+.|++..++
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred CCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 9776666556667789999999999964 665443333 238999999999886
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.62 E-value=1.6e-07 Score=94.60 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 012255 262 NLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISF 334 (467)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 334 (467)
+|++|++++...+.......+...+|.|++|.+.+- .+.++.+..+..++|+|..|++++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-------------~~~~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-------------QFDNDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-------------eecchhHHHHhhccCccceeecCC
Confidence 355555555443444444444444555555555441 233333444444555555555554
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.61 E-value=4.1e-10 Score=106.61 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=87.5
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
.++.|+.|.+++.. .+-..++..+..+.+|..++++... +.. +......+++|+.|++++.. +
T Consensus 195 smtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~-Lp~--vPecly~l~~LrrLNLS~N~-------------i 257 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN-LPI--VPECLYKLRNLRRLNLSGNK-------------I 257 (1255)
T ss_pred cchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccC-CCc--chHHHhhhhhhheeccCcCc-------------e
Confidence 44555556666543 2222233333445566666666543 221 11222356777777777632 3
Q ss_pred CHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHH-HHHHhCCCCCEEeecC
Q 012255 313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGM-EALCSAHYLEILELAR 391 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~ 391 (467)
+.-.+.. ....+|++|+++. +.++.-. ..+.+...|+.|.+.++ .++-+++ ..+.++-+|+.+...+
T Consensus 258 teL~~~~--~~W~~lEtLNlSr--------NQLt~LP-~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 258 TELNMTE--GEWENLETLNLSR--------NQLTVLP-DAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred eeeeccH--HHHhhhhhhcccc--------chhccch-HHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhc
Confidence 2211110 0234667777765 2222100 01111111555555442 3333332 3344455566665554
Q ss_pred CCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCC
Q 012255 392 CQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQV 445 (467)
Q Consensus 392 c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~ 445 (467)
+.+ ....+-+++|+.|+.|.+....-||-.-..++ ++.|+.|++.++|++
T Consensus 326 -N~L-ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl--L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 326 -NKL-ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL--LPDLKVLDLRENPNL 375 (1255)
T ss_pred -ccc-ccCchhhhhhHHHHHhcccccceeechhhhhh--cCCcceeeccCCcCc
Confidence 221 11223455788899998887555663222222 788999999988765
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.61 E-value=1.6e-09 Score=102.71 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=53.8
Q ss_pred hhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccc
Q 012255 94 NSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKL 173 (467)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 173 (467)
+.+..++.|.+... ++.. ....++.+.+|++|.+..+ .+. .+..-+..+|.|+.+.+..+ .+.+.+++..+..+
T Consensus 29 ~qMt~~~WLkLnrt-~L~~-vPeEL~~lqkLEHLs~~HN-~L~--~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRT-KLEQ-VPEELSRLQKLEHLSMAHN-QLI--SVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRL 102 (1255)
T ss_pred HHhhheeEEEechh-hhhh-ChHHHHHHhhhhhhhhhhh-hhH--hhhhhhccchhhHHHhhhcc-ccccCCCCchhccc
Confidence 34567788888554 3322 2345667888888888864 222 12233457788888888776 55555566667777
Q ss_pred cccccccccc
Q 012255 174 ERLEDLLIKN 183 (467)
Q Consensus 174 ~~L~~L~l~~ 183 (467)
..|..|+++.
T Consensus 103 ~dLt~lDLSh 112 (1255)
T KOG0444|consen 103 KDLTILDLSH 112 (1255)
T ss_pred ccceeeecch
Confidence 7777777765
No 23
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.3e-07 Score=77.46 Aligned_cols=90 Identities=28% Similarity=0.328 Sum_probs=77.7
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcC-CCCCCEEeecCCCCCCccchHhhhcCCCCCee
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQ-FPHLSILRLRKCLGVTDDGLKPLVGSHKLDLL 437 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L 437 (467)
++.++-++ ..|..+++..+..+++++.|.+.+|..+.|.++..+.+ .++|+.|+|++|+.||+.|+..+.++++|+.|
T Consensus 103 IeaVDAsd-s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCC-chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 55555555 36677888888899999999999999999999999985 78999999999999999999999999999999
Q ss_pred ccCCCCCCCHHH
Q 012255 438 AVEDCPQVSERG 449 (467)
Q Consensus 438 ~l~~c~~~~~~~ 449 (467)
.+.+-+.|...+
T Consensus 182 ~l~~l~~v~~~e 193 (221)
T KOG3864|consen 182 HLYDLPYVANLE 193 (221)
T ss_pred HhcCchhhhchH
Confidence 999988777543
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=5.1e-07 Score=91.11 Aligned_cols=85 Identities=9% Similarity=0.138 Sum_probs=66.5
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
.-.+|++|+++|-......+...+-.-+|.|++|.+.+.. +..+++..+...+|+|+.|+++++. +
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~Tn-------------I 185 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTN-------------I 185 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCC-------------c
Confidence 3469999999997766667777776789999999999876 5566688889999999999999864 5
Q ss_pred CHHHHHHHHhcCCCCCeEEecc
Q 012255 313 TDESLKALADNCRMLESVRISF 334 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~ 334 (467)
++- ..+. .+++|+.|.+.+
T Consensus 186 ~nl--~GIS-~LknLq~L~mrn 204 (699)
T KOG3665|consen 186 SNL--SGIS-RLKNLQVLSMRN 204 (699)
T ss_pred cCc--HHHh-ccccHHHHhccC
Confidence 443 2233 577888888866
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.35 E-value=1.3e-07 Score=85.04 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=47.2
Q ss_pred CCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccccccc
Q 012255 98 YLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLE 177 (467)
Q Consensus 98 ~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 177 (467)
.-.+|.+... .++...-.++..+++|++|+|+.+ .++..+ +..++++++|.+|-+.+..+|++. ....++.+.+|+
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKN-NISFIA-PDAFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceeccccc-chhhcC-hHhhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHH
Confidence 4455666544 455555555566677777777764 454444 344556677777777664466554 445556666666
Q ss_pred ccccc
Q 012255 178 DLLIK 182 (467)
Q Consensus 178 ~L~l~ 182 (467)
.|.+.
T Consensus 144 rLllN 148 (498)
T KOG4237|consen 144 RLLLN 148 (498)
T ss_pred HHhcC
Confidence 66554
No 26
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.35 E-value=3.9e-07 Score=55.92 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=31.8
Q ss_pred CchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhc
Q 012255 4 LPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQ 39 (467)
Q Consensus 4 LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~ 39 (467)
||+|++.+||.+|+ ..|+.+++.|||+|+.+....
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999997 899999999999999986543
No 27
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.33 E-value=8.2e-08 Score=61.28 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=30.3
Q ss_pred CCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhh
Q 012255 2 DTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNE 38 (467)
Q Consensus 2 ~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~ 38 (467)
.+||+|++.+||++|+ ..++.+++.|||+|+++...
T Consensus 4 ~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 4 SDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence 5799999999999997 99999999999999998544
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=2.2e-05 Score=67.63 Aligned_cols=194 Identities=18% Similarity=0.136 Sum_probs=103.0
Q ss_pred ccCCCCcceeeccccCc--cCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHH------------HhCCCCCeeeecc
Q 012255 231 RVPCENMVELSLKNCII--SPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMA------------QTSSKLRSISLRV 296 (467)
Q Consensus 231 ~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~------------~~~~~L~~L~l~~ 296 (467)
...||+|+..++++.-+ .....+..++++-..|++|.+++|. +...+-..+. ..-|.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45788888888876532 1224455666777888888888774 3322211111 1236677776555
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHH----HhCC-CcEeecccccccc
Q 012255 297 PSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLI----QKCP-VRELSLDYVYSFN 371 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~----~~~~-L~~L~l~~~~~~~ 371 (467)
.+.. +.+..-.....+.-.+|+++++.. +++..+++..++ ..|. |+.|++..+ .++
T Consensus 167 NRle----------ngs~~~~a~~l~sh~~lk~vki~q--------NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft 227 (388)
T COG5238 167 NRLE----------NGSKELSAALLESHENLKEVKIQQ--------NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFT 227 (388)
T ss_pred chhc----------cCcHHHHHHHHHhhcCceeEEeee--------cCcCcchhHHHHHHHHHHhCcceeeecccc-chh
Confidence 3311 122222333333345788888876 566666554442 1233 777777763 455
Q ss_pred HHHHHHHH----hCCCCCEEeecCCCCcCHHHHH----Hhc--CCCCCCEEeecCCCCCCc-----cchHhhhc--CCCC
Q 012255 372 DVGMEALC----SAHYLEILELARCQEISDEGLQ----LAC--QFPHLSILRLRKCLGVTD-----DGLKPLVG--SHKL 434 (467)
Q Consensus 372 ~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~----~l~--~~~~L~~L~l~~c~~it~-----~~~~~l~~--~~~L 434 (467)
..+-..+. ..+.|+.|.+..|.- +..+.. .+. ..|+|..|...+. .+.. ..+..+.+ .|-|
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDCll-s~~G~~~v~~~f~e~~~p~l~~L~~~Yn-e~~~~~i~~~~l~~~e~~~~p~L 305 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLL-SNEGVKSVLRRFNEKFVPNLMPLPGDYN-ERRGGIILDISLNEFEQDAVPLL 305 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhh-ccccHHHHHHHhhhhcCCCccccccchh-hhcCceeeeechhhhhhcccHHH
Confidence 55554444 345667777777642 222222 222 3566776666652 2222 22333333 6666
Q ss_pred CeeccCCCCCCCH
Q 012255 435 DLLAVEDCPQVSE 447 (467)
Q Consensus 435 ~~L~l~~c~~~~~ 447 (467)
..|.+.++. ++.
T Consensus 306 ~~le~ngNr-~~E 317 (388)
T COG5238 306 VDLERNGNR-IKE 317 (388)
T ss_pred HHHHHccCc-chh
Confidence 666666664 443
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.26 E-value=2.1e-07 Score=92.58 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKC 417 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 417 (467)
+.+++.|+.++++. +.++...+......|+|+.|++++.
T Consensus 448 ~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCC
Confidence 33455566666653 4555544444333455666666653
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.4e-06 Score=75.75 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=83.2
Q ss_pred CceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCch-HHHHHhcccccccccccccCCCCChhhHHhhccCcccc
Q 012255 124 LSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSV-EWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKL 202 (467)
Q Consensus 124 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 202 (467)
++.|.+.++.--+...+..+...+..++++++.++ .++++ ++...+.++|.|+.|+++..+ +.. .+..+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~-L~s-~I~~lp------ 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS-LSS-DIKSLP------ 117 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc-CCC-ccccCc------
Confidence 33444444432233344455556666777777666 44443 344445566667766665321 111 111110
Q ss_pred cccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCc----ccchhH
Q 012255 203 KRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCV----GVRDSD 278 (467)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~----~~~~~~ 278 (467)
....+|+.|.+.|.. .+.......+..+|.++.|+++... .+.++.
T Consensus 118 -----------------------------~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c 167 (418)
T KOG2982|consen 118 -----------------------------LPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC 167 (418)
T ss_pred -----------------------------ccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccchhhhhcccccc
Confidence 123466666666544 4455555566667777777766542 112222
Q ss_pred HHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 012255 279 IINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISF 334 (467)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 334 (467)
... .-+.++++++.+|+ ...+.....+.+.+|++..+-+..
T Consensus 168 ~e~---~s~~v~tlh~~~c~------------~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 168 IED---WSTEVLTLHQLPCL------------EQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred ccc---cchhhhhhhcCCcH------------HHHHHHHHhHHhhcccchheeeec
Confidence 211 23567777777765 445555666666778888777765
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.18 E-value=5e-07 Score=89.95 Aligned_cols=267 Identities=17% Similarity=0.170 Sum_probs=145.3
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
.+|++++++.. +++... ..+..|.+|+.++...+ .++ .+..-.....+|+.|.+..++ +.- +....+...+|
T Consensus 241 ~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N-~l~--~lp~ri~~~~~L~~l~~~~ne-l~y--ip~~le~~~sL 312 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLP-EWIGACANLEALNANHN-RLV--ALPLRISRITSLVSLSAAYNE-LEY--IPPFLEGLKSL 312 (1081)
T ss_pred ccceeeecchh-hhhcch-HHHHhcccceEecccch-hHH--hhHHHHhhhhhHHHHHhhhhh-hhh--CCCccccccee
Confidence 46777888765 444433 44557888888888764 342 222323345566666666552 211 22233345566
Q ss_pred cccccccCCCCChh----------hHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccC
Q 012255 177 EDLLIKNCRAIGEG----------DLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCI 246 (467)
Q Consensus 177 ~~L~l~~~~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 246 (467)
++|++... ++.+. .+..+...+.++..+. .+ .....+.|+.|.+.+..
T Consensus 313 ~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-------------------~~--~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 313 RTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-------------------SY--EENNHAALQELYLANNH 370 (1081)
T ss_pred eeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc-------------------cc--cchhhHHHHHHHHhcCc
Confidence 77766532 11111 0111111111111110 00 03345678888888765
Q ss_pred ccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCC
Q 012255 247 ISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRM 326 (467)
Q Consensus 247 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 326 (467)
.++.-++. +.++++|+.|++++.. ++.... ...+.++.|++|.+++.. ++... ..++ .|+.
T Consensus 371 -Ltd~c~p~-l~~~~hLKVLhLsyNr-L~~fpa-s~~~kle~LeeL~LSGNk-------------L~~Lp-~tva-~~~~ 431 (1081)
T KOG0618|consen 371 -LTDSCFPV-LVNFKHLKVLHLSYNR-LNSFPA-SKLRKLEELEELNLSGNK-------------LTTLP-DTVA-NLGR 431 (1081)
T ss_pred -ccccchhh-hccccceeeeeecccc-cccCCH-HHHhchHHhHHHhcccch-------------hhhhh-HHHH-hhhh
Confidence 55555544 5788999999999874 332222 223467889999999853 44433 3334 6788
Q ss_pred CCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCC
Q 012255 327 LESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQF 406 (467)
Q Consensus 327 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~ 406 (467)
|++|.... +.+.... .+.+...|+.++++.+ .++...+....--|+|+.|+++|... ..-..+.+..+
T Consensus 432 L~tL~ahs--------N~l~~fP--e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~-l~~d~~~l~~l 499 (1081)
T KOG0618|consen 432 LHTLRAHS--------NQLLSFP--ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR-LVFDHKTLKVL 499 (1081)
T ss_pred hHHHhhcC--------Cceeech--hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc-cccchhhhHHh
Confidence 88888865 3333322 4444344999999874 44444433322238999999998542 22223445555
Q ss_pred CCCCEEeecCCCCCCccch
Q 012255 407 PHLSILRLRKCLGVTDDGL 425 (467)
Q Consensus 407 ~~L~~L~l~~c~~it~~~~ 425 (467)
..+...++.. ++.++...
T Consensus 500 ~~l~~~~i~~-~~~~d~~~ 517 (1081)
T KOG0618|consen 500 KSLSQMDITL-NNTPDGNV 517 (1081)
T ss_pred hhhhheeccc-CCCCcccc
Confidence 5665555555 23444433
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.10 E-value=2.5e-06 Score=86.74 Aligned_cols=262 Identities=17% Similarity=0.056 Sum_probs=130.4
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
.+-..|+++.+ .++... ..+ .++|+.|.+.++ .++. ++ ...++|++|++.++ .++.. .. ..++|
T Consensus 201 ~~~~~LdLs~~-~LtsLP-~~l--~~~L~~L~L~~N-~Lt~--LP---~lp~~Lk~LdLs~N-~LtsL--P~---lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLP-DCL--PAHITTLVIPDN-NLTS--LP---ALPPELRTLEVSGN-QLTSL--PV---LPPGL 264 (788)
T ss_pred CCCcEEEcCCC-CCCcCC-cch--hcCCCEEEccCC-cCCC--CC---CCCCCCcEEEecCC-ccCcc--cC---ccccc
Confidence 45667777766 444311 112 147888888864 4443 22 23578888888876 44432 11 13577
Q ss_pred cccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHH
Q 012255 177 EDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACV 256 (467)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l 256 (467)
+.|++..+. +. .+.....+|+.|.+....-- .++ ...++|+.|+++++. +.. +..
T Consensus 265 ~~L~Ls~N~-L~-----~Lp~lp~~L~~L~Ls~N~Lt------------~LP---~~p~~L~~LdLS~N~-L~~--Lp~- 319 (788)
T PRK15387 265 LELSIFSNP-LT-----HLPALPSGLCKLWIFGNQLT------------SLP---VLPPGLQELSVSDNQ-LAS--LPA- 319 (788)
T ss_pred ceeeccCCc-hh-----hhhhchhhcCEEECcCCccc------------ccc---ccccccceeECCCCc-ccc--CCC-
Confidence 777776542 22 12122244555554432100 111 123578888887654 221 111
Q ss_pred HhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccC
Q 012255 257 LGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSD 336 (467)
Q Consensus 257 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 336 (467)
..++|+.|.+.++. ++. +....++|+.|+++++. ++. +....++|+.|++.+
T Consensus 320 --lp~~L~~L~Ls~N~-L~~-----LP~lp~~Lq~LdLS~N~-------------Ls~-----LP~lp~~L~~L~Ls~-- 371 (788)
T PRK15387 320 --LPSELCKLWAYNNQ-LTS-----LPTLPSGLQELSVSDNQ-------------LAS-----LPTLPSELYKLWAYN-- 371 (788)
T ss_pred --CcccccccccccCc-ccc-----ccccccccceEecCCCc-------------cCC-----CCCCCcccceehhhc--
Confidence 12356667666653 321 11112467777777643 221 011124566666654
Q ss_pred CCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHH-hCCCCCEEeecCCCCcCHHHHHHhcC-CCCCCEEe
Q 012255 337 GEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALC-SAHYLEILELARCQEISDEGLQLACQ-FPHLSILR 413 (467)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~c~~it~~~~~~l~~-~~~L~~L~ 413 (467)
+.++. + ....+ |+.|+++++. ++. +. ..++|+.|+++++ .++. +.. ..+|+.|+
T Consensus 372 ------N~L~~--L---P~l~~~L~~LdLs~N~-Lt~-----LP~l~s~L~~LdLS~N-~Lss-----IP~l~~~L~~L~ 428 (788)
T PRK15387 372 ------NRLTS--L---PALPSGLKELIVSGNR-LTS-----LPVLPSELKELMVSGN-RLTS-----LPMLPSGLLSLS 428 (788)
T ss_pred ------ccccc--C---cccccccceEEecCCc-ccC-----CCCcccCCCEEEccCC-cCCC-----CCcchhhhhhhh
Confidence 22221 1 11112 7777776642 221 11 1356777777774 3332 111 23566777
Q ss_pred ecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHH
Q 012255 414 LRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGA 453 (467)
Q Consensus 414 l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l 453 (467)
+++ +.++. .-..+..+++|+.|++++++ ++....+.+
T Consensus 429 Ls~-NqLt~-LP~sl~~L~~L~~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 429 VYR-NQLTR-LPESLIHLSSETTVNLEGNP-LSERTLQAL 465 (788)
T ss_pred hcc-Ccccc-cChHHhhccCCCeEECCCCC-CCchHHHHH
Confidence 776 44653 22334456777777777776 676665555
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2.3e-06 Score=70.23 Aligned_cols=64 Identities=31% Similarity=0.410 Sum_probs=42.7
Q ss_pred CcEeeccccccccHHHHHHHHh-CCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCc
Q 012255 359 VRELSLDYVYSFNDVGMEALCS-AHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTD 422 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~ 422 (467)
++.|.+.+|..+.|.++..+.+ .++|+.|+|++|+.||+.++..+.++++|+.|.+.+-+.+.+
T Consensus 127 i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 127 IKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred hhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 5555555566666666666664 577777777777777777777777777777777776554444
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=3.3e-06 Score=73.45 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=22.6
Q ss_pred hCCCCCEEeecCCCCcCHH-HHHHhcCCCCCCEEeecCCC
Q 012255 380 SAHYLEILELARCQEISDE-GLQLACQFPHLSILRLRKCL 418 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~-~~~~l~~~~~L~~L~l~~c~ 418 (467)
.+|++-.|+++. ..+.+. .+.++.++++|..|.+++.+
T Consensus 222 ~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence 455666666655 344332 34556677777777777744
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.05 E-value=1.5e-06 Score=71.88 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=17.2
Q ss_pred CCCCcceeeccccCccCchh-HHHHHhcCCCCcEEEccc
Q 012255 233 PCENMVELSLKNCIISPGRG-LACVLGKCRNLEKIHLDM 270 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~ 270 (467)
.+++|+.|++.+.+...... -..++..+|+|+.|+-..
T Consensus 111 ~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 45667777776655333322 234456777777776554
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.03 E-value=1.7e-06 Score=78.12 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=68.2
Q ss_pred CccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHH
Q 012255 65 NLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVV 144 (467)
Q Consensus 65 ~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~ 144 (467)
.-..+.|...+. ..+.+.++ +..++|+.|+++.. +++.++-.++..+++|-+|.+.+..++++.. ...+
T Consensus 68 ~tveirLdqN~I-----~~iP~~aF----~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-k~~F 136 (498)
T KOG4237|consen 68 ETVEIRLDQNQI-----SSIPPGAF----KTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLP-KGAF 136 (498)
T ss_pred cceEEEeccCCc-----ccCChhhc----cchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhh-hhHh
Confidence 445555554332 23444333 56688899999886 7777777777777888888888766777654 3445
Q ss_pred hcCCCCcEEeccCCcccCchHHHHHhccccccccccccc
Q 012255 145 VGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKN 183 (467)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 183 (467)
.++..|+.|.+.-+ .+... ....+..+++|..|.++.
T Consensus 137 ~gL~slqrLllNan-~i~Ci-r~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 137 GGLSSLQRLLLNAN-HINCI-RQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hhHHHHHHHhcChh-hhcch-hHHHHHHhhhcchhcccc
Confidence 56777777777654 33333 456667777777776654
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.01 E-value=1.2e-05 Score=81.84 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=10.5
Q ss_pred hCCCCCEEeecCCCCcCHHHHH
Q 012255 380 SAHYLEILELARCQEISDEGLQ 401 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~ 401 (467)
++++|+.|++++ +.++...+.
T Consensus 443 ~L~~L~~LdLs~-N~Ls~~~~~ 463 (788)
T PRK15387 443 HLSSETTVNLEG-NPLSERTLQ 463 (788)
T ss_pred hccCCCeEECCC-CCCCchHHH
Confidence 455555555555 344444433
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.99 E-value=3.4e-06 Score=69.78 Aligned_cols=57 Identities=26% Similarity=0.368 Sum_probs=16.4
Q ss_pred CcEeeccccccccHHHHHHHH-hCCCCCEEeecCCCCcCH-HHHHHhcCCCCCCEEeecCCC
Q 012255 359 VRELSLDYVYSFNDVGMEALC-SAHYLEILELARCQEISD-EGLQLACQFPHLSILRLRKCL 418 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~c~~it~-~~~~~l~~~~~L~~L~l~~c~ 418 (467)
|++|.++++ .+++.+ ..+. .+|+|++|.+++ +.+.+ ..+..+..+|+|+.|++.+++
T Consensus 66 L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 66 LKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp --EEE--SS----S-C-HHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hhhcccCCC-CCCccc-cchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 556655553 222211 1121 355566666655 33322 113344455566666665543
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.80 E-value=0.00056 Score=59.19 Aligned_cols=169 Identities=21% Similarity=0.269 Sum_probs=88.9
Q ss_pred HhcCCCCcEEEcccCcc--cchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHH-----hcCCCCCe
Q 012255 257 LGKCRNLEKIHLDMCVG--VRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALA-----DNCRMLES 329 (467)
Q Consensus 257 ~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-----~~~~~L~~ 329 (467)
+-.||+|+.+++++... -....+..+..+-+.|.+|.+++|..=+..+ .--..++..++ ..-|.|++
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG------~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG------GRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch------hHHHHHHHHHHHHhhhccCCCceE
Confidence 35677777777776541 1123344455566777777777765211111 11111222222 12467777
Q ss_pred EEecccCCCCCcccccc---HHHHHHHHHhCC-CcEeeccccccccHHHHHHHH-----hCCCCCEEeecCCCCcCHHHH
Q 012255 330 VRISFSDGEFPSISSFT---LDGILTLIQKCP-VRELSLDYVYSFNDVGMEALC-----SAHYLEILELARCQEISDEGL 400 (467)
Q Consensus 330 L~l~~~~~~~~~~~~~~---~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~c~~it~~~~ 400 (467)
..++. +++. .+-.....+... |+.+.+..+ .|..+++..+. -+++|+.|++.. +.+|..+-
T Consensus 162 vicgr--------NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS 231 (388)
T COG5238 162 VICGR--------NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGS 231 (388)
T ss_pred EEecc--------chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhH
Confidence 76655 3332 222333334343 777776663 45555443332 367777777766 45555554
Q ss_pred HHhc----CCCCCCEEeecCCCCCCccchHhhhc------CCCCCeeccCCC
Q 012255 401 QLAC----QFPHLSILRLRKCLGVTDDGLKPLVG------SHKLDLLAVEDC 442 (467)
Q Consensus 401 ~~l~----~~~~L~~L~l~~c~~it~~~~~~l~~------~~~L~~L~l~~c 442 (467)
.+++ .++.|+.|.+.+|- ++..|...+.. .|+|..|....+
T Consensus 232 ~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchh
Confidence 4433 46667777777775 55555444432 566666666555
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.59 E-value=3e-05 Score=52.21 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=49.9
Q ss_pred CCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 382 HYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 382 ~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
|+|+.|++++| .++......+.++++|+.|++++ +.++......+..+++|+.|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57899999985 77766666777899999999997 56888777778889999999999985
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.52 E-value=0.00011 Score=76.50 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=33.5
Q ss_pred cCCCCceeeccCCCC-CChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccC
Q 012255 120 SCLNLSTLKLKFTTR-ITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNC 184 (467)
Q Consensus 120 ~~~~L~~L~l~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 184 (467)
.+++|++|-+.+... +.. ....++..+|.|+.|+++++.... .++..++.+-+|+.|+++.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred CCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC
Confidence 455666666665321 111 112335566777777777654333 25566666666666666543
No 42
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.46 E-value=0.00015 Score=39.03 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=18.9
Q ss_pred CCCCCeeccCCCCCCCHHHHHHHHh
Q 012255 431 SHKLDLLAVEDCPQVSERGVQGAAR 455 (467)
Q Consensus 431 ~~~L~~L~l~~c~~~~~~~~~~l~~ 455 (467)
|++|+.|++++|++||+.++..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5677778888887788877777764
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.43 E-value=7.1e-05 Score=78.00 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=21.8
Q ss_pred cCCCCcEEeccCCcc-cCchHHHHHhcccccccccccccC
Q 012255 146 GCKNLTVLHLIRCLN-VNSVEWLEYLGKLERLEDLLIKNC 184 (467)
Q Consensus 146 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 184 (467)
.+++|++|-+.++.. +... ....+...|.|..|+++++
T Consensus 543 ~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGN 581 (889)
T ss_pred CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCC
Confidence 556777777766532 1111 2233555677777777764
No 44
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.07 E-value=0.00039 Score=37.32 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=11.4
Q ss_pred CCCCEEeecCCCCcCHHHHHHh
Q 012255 382 HYLEILELARCQEISDEGLQLA 403 (467)
Q Consensus 382 ~~L~~L~l~~c~~it~~~~~~l 403 (467)
++|++|++++|..+||.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555555555555444
No 45
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.94 E-value=0.004 Score=64.11 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=24.0
Q ss_pred CCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccC
Q 012255 122 LNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNC 184 (467)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 184 (467)
++|+.|+++++ .++.. +.. ..++|+.|++.++ .+.. +...+ .++|+.|+++++
T Consensus 199 ~~L~~L~Ls~N-~LtsL--P~~--l~~nL~~L~Ls~N-~Lts--LP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 199 EQITTLILDNN-ELKSL--PEN--LQGNIKTLYANSN-QLTS--IPATL--PDTIQEMELSIN 251 (754)
T ss_pred cCCcEEEecCC-CCCcC--Chh--hccCCCEEECCCC-cccc--CChhh--hccccEEECcCC
Confidence 35666666654 33321 111 1246666666655 3332 11111 135666666554
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.87 E-value=0.00026 Score=47.62 Aligned_cols=59 Identities=25% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCC
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRC 158 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 158 (467)
|+|++|+++++ +++......+..+++|++|+++++ .++... ...+..+++|++|++.++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEE-TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccC-HHHHcCCCCCCEEeCcCC
Confidence 45556666555 444433334445556666666643 333221 123345556666655554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.60 E-value=0.00024 Score=69.77 Aligned_cols=173 Identities=25% Similarity=0.353 Sum_probs=99.1
Q ss_pred cCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHh----------CCCCCeeeeccCCCCC
Q 012255 232 VPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQT----------SSKLRSISLRVPSDFS 301 (467)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------~~~L~~L~l~~~~~~~ 301 (467)
..+..|+.|.+++|+--+..++..+-+ .|++|--.+.- ..+..++.. |..|.+.+++...
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~Sl----~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~--- 175 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHNSL----DALRHVFASCGGDISNSPVWNKLATASFSYNR--- 175 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhccH----HHHHHHHHHhccccccchhhhhHhhhhcchhh---
Confidence 356789999999988555566655533 35554433221 222222221 1233333333211
Q ss_pred ccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHh
Q 012255 302 LPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCS 380 (467)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~ 380 (467)
-..-|.+++ -.|.|+.|+++. +.+++.. ....|+ |++|+|+.+. +..-.-.....
T Consensus 176 --------L~~mD~SLq----ll~ale~LnLsh--------Nk~~~v~---~Lr~l~~LkhLDlsyN~-L~~vp~l~~~g 231 (1096)
T KOG1859|consen 176 --------LVLMDESLQ----LLPALESLNLSH--------NKFTKVD---NLRRLPKLKHLDLSYNC-LRHVPQLSMVG 231 (1096)
T ss_pred --------HHhHHHHHH----HHHHhhhhccch--------hhhhhhH---HHHhcccccccccccch-hccccccchhh
Confidence 011222222 357899999987 6666654 334466 9999998752 21111111113
Q ss_pred CCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccc-hHhhhcCCCCCeeccCCCC
Q 012255 381 AHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDG-LKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 381 ~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~-~~~l~~~~~L~~L~l~~c~ 443 (467)
|+ |+.|++.+ +.++. +..+.++.+|+.|++++ +-+.+.. +..+..+..|+.|++.|+|
T Consensus 232 c~-L~~L~lrn-N~l~t--L~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 232 CK-LQLLNLRN-NALTT--LRGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hh-heeeeecc-cHHHh--hhhHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 44 99999988 44443 55666889999999998 4455422 4444446789999999987
No 48
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.57 E-value=0.021 Score=58.95 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=95.9
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
++++.|+++.... ..+.. ..+++|++|+++++ +++.... .+ .++|+.|+++++ .++.. +..
T Consensus 199 ~~L~~L~Ls~N~L-----tsLP~-------~l~~nL~~L~Ls~N-~LtsLP~-~l--~~~L~~L~Ls~N-~L~~L--P~~ 259 (754)
T PRK15370 199 EQITTLILDNNEL-----KSLPE-------NLQGNIKTLYANSN-QLTSIPA-TL--PDTIQEMELSIN-RITEL--PER 259 (754)
T ss_pred cCCcEEEecCCCC-----CcCCh-------hhccCCCEEECCCC-ccccCCh-hh--hccccEEECcCC-ccCcC--Chh
Confidence 4788999875533 11221 12368999999887 4543211 11 247899999886 34432 111
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCc-ccccccccccccccccccchhhh
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCW-RKLKRLQFEVDVNYRYMKVYDRL 222 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 222 (467)
. ..+|+.|+++++ .+.. +...+ .++|+.|+++++ .++. +.... ++|+.|.+.... +.
T Consensus 260 l--~s~L~~L~Ls~N-~L~~--LP~~l--~~sL~~L~Ls~N-~Lt~-----LP~~lp~sL~~L~Ls~N~-Lt-------- 317 (754)
T PRK15370 260 L--PSALQSLDLFHN-KISC--LPENL--PEELRYLSVYDN-SIRT-----LPAHLPSGITHLNVQSNS-LT-------- 317 (754)
T ss_pred H--hCCCCEEECcCC-ccCc--ccccc--CCCCcEEECCCC-cccc-----CcccchhhHHHHHhcCCc-cc--------
Confidence 1 247899999876 4442 22222 247888888775 3332 11111 245555554321 00
Q ss_pred hhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCC
Q 012255 223 AVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPS 298 (467)
Q Consensus 223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (467)
.++ ....++|+.|.++++. ++. +... -+++|+.|+++++. +.... .. -.++|++|++.+|.
T Consensus 318 ---~LP--~~l~~sL~~L~Ls~N~-Lt~--LP~~--l~~sL~~L~Ls~N~-L~~LP-~~---lp~~L~~LdLs~N~ 378 (754)
T PRK15370 318 ---ALP--ETLPPGLKTLEAGENA-LTS--LPAS--LPPELQVLDVSKNQ-ITVLP-ET---LPPTITTLDVSRNA 378 (754)
T ss_pred ---cCC--ccccccceeccccCCc-ccc--CChh--hcCcccEEECCCCC-CCcCC-hh---hcCCcCEEECCCCc
Confidence 111 1123578888887765 222 1111 13678888888764 43211 11 13678888888765
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.48 E-value=7.4e-05 Score=59.83 Aligned_cols=80 Identities=24% Similarity=0.199 Sum_probs=48.2
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
.+++.|.+++. +++.. ...++.+.+|+.|+++++ ++.+ ++.-.+++++|+.|++.-+ .+.. ....++.+|-|
T Consensus 33 s~ITrLtLSHN-Kl~~v-ppnia~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmn-rl~~--lprgfgs~p~l 104 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVV-PPNIAELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMN-RLNI--LPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhcccC-ceeec-CCcHHHhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchh-hhhc--CccccCCCchh
Confidence 44556666654 33321 123456778888888764 4443 3344557888888888754 2221 44567778888
Q ss_pred cccccccC
Q 012255 177 EDLLIKNC 184 (467)
Q Consensus 177 ~~L~l~~~ 184 (467)
+.|++...
T Consensus 105 evldltyn 112 (264)
T KOG0617|consen 105 EVLDLTYN 112 (264)
T ss_pred hhhhcccc
Confidence 88888653
No 50
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.45 E-value=0.0018 Score=63.01 Aligned_cols=196 Identities=23% Similarity=0.313 Sum_probs=118.0
Q ss_pred cceeeccccCccCchh---HHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCC----CCCeeeeccCCCCCccccccCC
Q 012255 237 MVELSLKNCIISPGRG---LACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSS----KLRSISLRVPSDFSLPILMSNP 309 (467)
Q Consensus 237 L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~ 309 (467)
+.++.+.++. ..+.+ +...+...++|+.|+++++. +.+.+...+...++ .|++|.+..|.
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c~----------- 155 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSCS----------- 155 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhccc-----------
Confidence 5666666654 33333 33344556778888888775 66666666655443 35666666664
Q ss_pred CCCCHHHHHHHHh---cCCCCCeEEecccCCCCCccccccHHHHHHHH---Hh-----CCCcEeeccccccccHHHHHHH
Q 012255 310 LRLTDESLKALAD---NCRMLESVRISFSDGEFPSISSFTLDGILTLI---QK-----CPVRELSLDYVYSFNDVGMEAL 378 (467)
Q Consensus 310 ~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~---~~-----~~L~~L~l~~~~~~~~~~~~~l 378 (467)
+++.+...++. ..+.++.+++.. +.+...+...+. +. +.+++|.+..|. ++......+
T Consensus 156 --l~~~g~~~l~~~L~~~~~l~~l~l~~--------n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l 224 (478)
T KOG4308|consen 156 --LTSEGAAPLAAVLEKNEHLTELDLSL--------NGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALL 224 (478)
T ss_pred --ccccchHHHHHHHhcccchhHHHHHh--------cccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHH
Confidence 44444333332 256777777766 344333333222 21 227888888863 344333333
Q ss_pred H----hCCC-CCEEeecCCCCcCHHHHHHhc----CC-CCCCEEeecCCCCCCccchHhhhc----CCCCCeeccCCCCC
Q 012255 379 C----SAHY-LEILELARCQEISDEGLQLAC----QF-PHLSILRLRKCLGVTDDGLKPLVG----SHKLDLLAVEDCPQ 444 (467)
Q Consensus 379 ~----~~~~-L~~L~l~~c~~it~~~~~~l~----~~-~~L~~L~l~~c~~it~~~~~~l~~----~~~L~~L~l~~c~~ 444 (467)
. ..++ +..|++.. +.+.|.+++.+. .. +.+++++++.| .+++.+...+.+ ++.++.+.+.+.+
T Consensus 225 ~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~- 301 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNP- 301 (478)
T ss_pred HHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCc-
Confidence 3 3344 66677775 577777766554 23 46788888885 488877777765 7788888888876
Q ss_pred CCHHHHHHHHhhccc
Q 012255 445 VSERGVQGAARSVSF 459 (467)
Q Consensus 445 ~~~~~~~~l~~~~~~ 459 (467)
+++.+.+.+.+.++.
T Consensus 302 l~~~~~~~~~~~l~~ 316 (478)
T KOG4308|consen 302 LTDYGVELLLEALER 316 (478)
T ss_pred cccHHHHHHHHHhhh
Confidence 788888877776554
No 51
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.40 E-value=0.0057 Score=59.56 Aligned_cols=84 Identities=26% Similarity=0.273 Sum_probs=47.4
Q ss_pred CCEEeecCCCCCChHhHHHHh----cCCCCceeeccCCCCCChhhHHHHHhcCC----CCcEEeccCCcccCc---hHHH
Q 012255 99 LTDLTLNYCTFITDVGLCYLA----SCLNLSTLKLKFTTRITGCGILSVVVGCK----NLTVLHLIRCLNVNS---VEWL 167 (467)
Q Consensus 99 L~~L~l~~~~~~~~~~l~~l~----~~~~L~~L~l~~~~~~~~~~l~~~~~~~~----~L~~L~l~~~~~~~~---~~~~ 167 (467)
+..|.+.+| .+.+.+...+. ..+.|+.|+++++ .+.+.+...+...++ .|+.|.+..| .++. ..+.
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 566666666 55555555544 4577777777775 444556555554443 3455555555 3322 2244
Q ss_pred HHhcccccccccccccCC
Q 012255 168 EYLGKLERLEDLLIKNCR 185 (467)
Q Consensus 168 ~~~~~~~~L~~L~l~~~~ 185 (467)
..+...+.++.+++..+.
T Consensus 166 ~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHhcccchhHHHHHhcc
Confidence 555556677777766553
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.33 E-value=0.0011 Score=58.25 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=86.3
Q ss_pred CCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCC
Q 012255 260 CRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEF 339 (467)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 339 (467)
...|+++++++.. ++ .+..-..-.|+++.|+++..+ +...+ .++ .+++|..|++++
T Consensus 283 Wq~LtelDLS~N~-I~--~iDESvKL~Pkir~L~lS~N~-------------i~~v~--nLa-~L~~L~~LDLS~----- 338 (490)
T KOG1259|consen 283 WQELTELDLSGNL-IT--QIDESVKLAPKLRRLILSQNR-------------IRTVQ--NLA-ELPQLQLLDLSG----- 338 (490)
T ss_pred Hhhhhhccccccc-hh--hhhhhhhhccceeEEeccccc-------------eeeeh--hhh-hcccceEeeccc-----
Confidence 4568888888764 32 222333446889999888643 33221 233 567899999987
Q ss_pred CccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCC
Q 012255 340 PSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCL 418 (467)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 418 (467)
+.++.- .-+-.... +++|.++++. -+.+..+.++=+|..|++.+..--.-+.+..+.++|.|+++.+.+.+
T Consensus 339 ---N~Ls~~--~Gwh~KLGNIKtL~La~N~---iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 339 ---NLLAEC--VGWHLKLGNIKTLKLAQNK---IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ---chhHhh--hhhHhhhcCEeeeehhhhh---HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 444331 11111123 8888887752 22344444566788888887432233446667788999999888854
Q ss_pred CCCcc---chHhhhc-CCCCCeeccCCCC
Q 012255 419 GVTDD---GLKPLVG-SHKLDLLAVEDCP 443 (467)
Q Consensus 419 ~it~~---~~~~l~~-~~~L~~L~l~~c~ 443 (467)
+... --..++. ..+-.++.+.+-+
T Consensus 411 -l~~~vdYRTKVLa~FGERaSE~~LD~~~ 438 (490)
T KOG1259|consen 411 -LAGSVDYRTKVLARFGERASEISLDNEP 438 (490)
T ss_pred -ccccchHHHHHHHHHhhhhhheecCCCC
Confidence 4321 1222332 2344556666554
No 53
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.32 E-value=0.00026 Score=64.55 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=20.4
Q ss_pred hcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 403 ACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 403 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+.++.+|..|++.+ +.+.. ...-+.+|.+|+.|++.|+|
T Consensus 501 l~nm~nL~tLDL~n-Ndlq~-IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQN-NDLQQ-IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhhcceeccCC-Cchhh-CChhhccccceeEEEecCCc
Confidence 33556666666666 32322 11123336667777776665
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0014 Score=56.63 Aligned_cols=91 Identities=18% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
.+|+|+.|.++........++..++..+|+|+++++++.. +.+..-..-.+.+.+|..|.+..|+ .+++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~----------~~~l 131 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS----------VTNL 131 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC----------cccc
Confidence 5678899998876434445666677788999999999875 5432222233467889999999988 3344
Q ss_pred CHHHHHHHHhcCCCCCeEEeccc
Q 012255 313 TDESLKALADNCRMLESVRISFS 335 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~~ 335 (467)
++ .-..++..+|+|++|+-..+
T Consensus 132 ~d-yre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 132 DD-YREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cc-HHHHHHHHhhhhcccccccc
Confidence 43 33445557889999987665
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.25 E-value=0.0027 Score=62.67 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=42.9
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhc--CCCCCCEEeecCCCCCCccchHhhhcCCCCCe
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLAC--QFPHLSILRLRKCLGVTDDGLKPLVGSHKLDL 436 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~--~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~ 436 (467)
+++|+++++ .+++ +..+..+++|++|+|+. +.++. +..+. +|. |..|.+++ +.++. +..+.++.+|+.
T Consensus 189 le~LnLshN-k~~~--v~~Lr~l~~LkhLDlsy-N~L~~--vp~l~~~gc~-L~~L~lrn-N~l~t--L~gie~LksL~~ 258 (1096)
T KOG1859|consen 189 LESLNLSHN-KFTK--VDNLRRLPKLKHLDLSY-NCLRH--VPQLSMVGCK-LQLLNLRN-NALTT--LRGIENLKSLYG 258 (1096)
T ss_pred hhhhccchh-hhhh--hHHHHhccccccccccc-chhcc--ccccchhhhh-heeeeecc-cHHHh--hhhHHhhhhhhc
Confidence 777777775 2232 22444677788888876 22221 11111 333 77777777 43442 444444668888
Q ss_pred eccCCCC
Q 012255 437 LAVEDCP 443 (467)
Q Consensus 437 L~l~~c~ 443 (467)
|+++++-
T Consensus 259 LDlsyNl 265 (1096)
T KOG1859|consen 259 LDLSYNL 265 (1096)
T ss_pred cchhHhh
Confidence 8887764
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0026 Score=55.45 Aligned_cols=103 Identities=25% Similarity=0.259 Sum_probs=53.3
Q ss_pred CCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHH
Q 012255 63 FGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILS 142 (467)
Q Consensus 63 ~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~ 142 (467)
+.++++|+.-+++ ++|.. +.+.+|.|+.|.|+-. +++. +..+..|.+|++|.|..+ .+.+..=..
T Consensus 18 l~~vkKLNcwg~~--------L~DIs---ic~kMp~lEVLsLSvN-kIss--L~pl~rCtrLkElYLRkN-~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--------LDDIS---ICEKMPLLEVLSLSVN-KISS--LAPLQRCTRLKELYLRKN-CIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCC--------ccHHH---HHHhcccceeEEeecc-cccc--chhHHHHHHHHHHHHHhc-ccccHHHHH
Confidence 4456666655332 45532 2345677777777554 4443 555566777777777654 333322223
Q ss_pred HHhcCCCCcEEeccCCcccCchH---HHHHhcccccccccc
Q 012255 143 VVVGCKNLTVLHLIRCLNVNSVE---WLEYLGKLERLEDLL 180 (467)
Q Consensus 143 ~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~ 180 (467)
.++++|+|+.|+|..++.....+ -...+..+|+|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 34567777777776544332211 112233456666553
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.89 E-value=0.0026 Score=55.00 Aligned_cols=87 Identities=25% Similarity=0.268 Sum_probs=56.4
Q ss_pred hCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccc
Q 012255 95 SCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLE 174 (467)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 174 (467)
.+..|+.|++.++. ++. +..+..+++|+.|.++.+..-...++..++..+|+|++|+++++ .+....-...+..++
T Consensus 41 ~~~~le~ls~~n~g-ltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccc-eee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhc
Confidence 34555566555542 111 23334567889998887644445566777778899999999887 555444455556667
Q ss_pred cccccccccCC
Q 012255 175 RLEDLLIKNCR 185 (467)
Q Consensus 175 ~L~~L~l~~~~ 185 (467)
+|..|++.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 78888887774
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.85 E-value=0.013 Score=36.13 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=19.5
Q ss_pred CCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCc
Q 012255 382 HYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTD 422 (467)
Q Consensus 382 ~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~ 422 (467)
++|+.|++++ ..+++... .+.++++|+.|+++++ .|++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~-~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPP-ELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETS-SS-SSHGG-HGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccC-CCCcccCc-hHhCCCCCCEEEecCC-CCCC
Confidence 3566666666 35554221 2556666666666664 3553
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.0048 Score=53.81 Aligned_cols=114 Identities=21% Similarity=0.195 Sum_probs=71.7
Q ss_pred CCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCH-HHHHH
Q 012255 325 RMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISD-EGLQL 402 (467)
Q Consensus 325 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~-~~~~~ 402 (467)
.+.+.|++.+ .+++|..+ .+..| |+.|.|+-+ .| ..+..+..|++|++|.|.. +.|.+ ..+.+
T Consensus 19 ~~vkKLNcwg--------~~L~DIsi---c~kMp~lEVLsLSvN-kI--ssL~pl~rCtrLkElYLRk-N~I~sldEL~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWG--------CGLDDISI---CEKMPLLEVLSLSVN-KI--SSLAPLQRCTRLKELYLRK-NCIESLDELEY 83 (388)
T ss_pred HHhhhhcccC--------CCccHHHH---HHhcccceeEEeecc-cc--ccchhHHHHHHHHHHHHHh-cccccHHHHHH
Confidence 4667777776 46666543 34456 888888764 22 2344555688888888866 34433 33677
Q ss_pred hcCCCCCCEEeecCCCCCCccchH----hhhcCCCCCeeccCCCCCCCHHHHHHHHhh
Q 012255 403 ACQFPHLSILRLRKCLGVTDDGLK----PLVGSHKLDLLAVEDCPQVSERGVQGAARS 456 (467)
Q Consensus 403 l~~~~~L~~L~l~~c~~it~~~~~----~l~~~~~L~~L~l~~c~~~~~~~~~~l~~~ 456 (467)
+.++|+|+.|-|...+.....|-. .+.-+|+|++|+ +..||.+.++...+.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEALRD 138 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHHHhc
Confidence 778888888888876655443321 122278888874 345888777776653
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.40 E-value=0.033 Score=34.23 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=26.8
Q ss_pred CCCCEEeecCCCCCCccchHh-hhcCCCCCeeccCCCCCCCH
Q 012255 407 PHLSILRLRKCLGVTDDGLKP-LVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 407 ~~L~~L~l~~c~~it~~~~~~-l~~~~~L~~L~l~~c~~~~~ 447 (467)
++|+.|++++ ++|++ +.. +.++++|+.|++++|+ +++
T Consensus 1 ~~L~~L~l~~-N~i~~--l~~~l~~l~~L~~L~l~~N~-i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN-NQITD--LPPELSNLPNLETLNLSNNP-ISD 38 (44)
T ss_dssp TT-SEEEETS-SS-SS--HGGHGTTCTTSSEEEETSSC-CSB
T ss_pred CcceEEEccC-CCCcc--cCchHhCCCCCCEEEecCCC-CCC
Confidence 5789999998 45886 334 7779999999999996 653
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.30 E-value=0.023 Score=53.60 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=82.2
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
.++++++|++++|. +.. ++ .-.++|++|.+.+|..+.... ..+ .++|++|.+.+|. .+
T Consensus 50 ~~~~l~~L~Is~c~-L~s--LP---~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs------------~L 107 (426)
T PRK15386 50 EARASGRLYIKDCD-IES--LP---VLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCP------------EI 107 (426)
T ss_pred HhcCCCEEEeCCCC-Ccc--cC---CCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCcc------------cc
Confidence 45788888888773 322 11 123458888888876542211 111 2578888888775 22
Q ss_pred CHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC--CcEeeccccccccHHHHHHHH-h-CCCCCEEe
Q 012255 313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP--VRELSLDYVYSFNDVGMEALC-S-AHYLEILE 388 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~l~-~-~~~L~~L~ 388 (467)
. . -.+.|+.|++.. ..... + ...| |+.|.+.+...... ..+. . .++|+.|.
T Consensus 108 ~-----s---LP~sLe~L~L~~--------n~~~~-----L-~~LPssLk~L~I~~~n~~~~---~~lp~~LPsSLk~L~ 162 (426)
T PRK15386 108 S-----G---LPESVRSLEIKG--------SATDS-----I-KNVPNGLTSLSINSYNPENQ---ARIDNLISPSLKTLS 162 (426)
T ss_pred c-----c---cccccceEEeCC--------CCCcc-----c-ccCcchHhheeccccccccc---cccccccCCcccEEE
Confidence 2 1 224677777754 11111 1 1123 67776643221100 0011 1 25788888
Q ss_pred ecCCCCcCHHHHHHhc-CC-CCCCEEeecCCCCCCcc-chHhhhcCCCCCeeccCCCCCCCHHHHH
Q 012255 389 LARCQEISDEGLQLAC-QF-PHLSILRLRKCLGVTDD-GLKPLVGSHKLDLLAVEDCPQVSERGVQ 451 (467)
Q Consensus 389 l~~c~~it~~~~~~l~-~~-~~L~~L~l~~c~~it~~-~~~~l~~~~~L~~L~l~~c~~~~~~~~~ 451 (467)
+++|..+. +. .+ .+|+.|.++.+...+-. ....+ -+++ .|.+.+|..++.+.+.
T Consensus 163 Is~c~~i~------LP~~LP~SLk~L~ls~n~~~sLeI~~~sL--P~nl-~L~f~n~lkL~~~~f~ 219 (426)
T PRK15386 163 LTGCSNII------LPEKLPESLQSITLHIEQKTTWNISFEGF--PDGL-DIDLQNSVLLSPDVFK 219 (426)
T ss_pred ecCCCccc------CcccccccCcEEEecccccccccCccccc--cccc-EechhhhcccCHHHhh
Confidence 88776432 11 12 36788887663211100 11111 2455 6777777666655443
No 62
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.26 E-value=0.014 Score=30.45 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=15.4
Q ss_pred CCCCCeeccCCCCCCCHHHHHHHHh
Q 012255 431 SHKLDLLAVEDCPQVSERGVQGAAR 455 (467)
Q Consensus 431 ~~~L~~L~l~~c~~~~~~~~~~l~~ 455 (467)
+++|+.|++++|. |+++++.++++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhCC
Confidence 4677777787776 77777777653
No 63
>PLN03150 hypothetical protein; Provisional
Probab=95.20 E-value=0.031 Score=57.10 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=16.4
Q ss_pred HhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecC
Q 012255 379 CSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRK 416 (467)
Q Consensus 379 ~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~ 416 (467)
..+++|+.|+++++ .++......+.++++|+.|++++
T Consensus 463 ~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 463 GSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred hCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcC
Confidence 34445555555442 33322233344445555555554
No 64
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.13 E-value=0.015 Score=53.96 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.6
Q ss_pred CCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhh
Q 012255 2 DTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDN 37 (467)
Q Consensus 2 ~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~ 37 (467)
.+||+|+|..|.++|+..-|+.+++.|||.||....
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 479999999999999877899999999999998744
No 65
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.09 E-value=0.016 Score=51.13 Aligned_cols=59 Identities=22% Similarity=0.178 Sum_probs=31.5
Q ss_pred hhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCC
Q 012255 94 NSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRC 158 (467)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 158 (467)
+-.|.++.|++++. .+.. +..+..+++|+.|+++++ .++. +...-..+.+++.|.+.++
T Consensus 304 KL~Pkir~L~lS~N-~i~~--v~nLa~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 304 KLAPKLRRLILSQN-RIRT--VQNLAELPQLQLLDLSGN-LLAE--CVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhccceeEEecccc-ceee--ehhhhhcccceEeecccc-hhHh--hhhhHhhhcCEeeeehhhh
Confidence 44577777777665 3333 333556677777777764 2221 1122224556666666554
No 66
>PLN03150 hypothetical protein; Provisional
Probab=94.68 E-value=0.059 Score=55.07 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=59.0
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
++.|+++++ .+.......+..+++|+.|+++++ .++...-..+.++++|+.|+++++ .++......+.++++|+.|+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEE
Confidence 677777775 333333345667888999999884 455444445678889999999984 57776667777788999999
Q ss_pred cCCCC
Q 012255 439 VEDCP 443 (467)
Q Consensus 439 l~~c~ 443 (467)
+++|.
T Consensus 497 Ls~N~ 501 (623)
T PLN03150 497 LNGNS 501 (623)
T ss_pred CcCCc
Confidence 98885
No 67
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.62 E-value=0.0013 Score=60.13 Aligned_cols=127 Identities=17% Similarity=0.086 Sum_probs=62.3
Q ss_pred CCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcc
Q 012255 121 CLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWR 200 (467)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 200 (467)
++.|++|+...+ .++ .++.-...+.+|..|.+..+ ++.. .-.++.|..|++|++... .+.- --.+.....+
T Consensus 182 m~~L~~ld~~~N-~L~--tlP~~lg~l~~L~~LyL~~N-ki~~---lPef~gcs~L~Elh~g~N-~i~~-lpae~~~~L~ 252 (565)
T KOG0472|consen 182 MKRLKHLDCNSN-LLE--TLPPELGGLESLELLYLRRN-KIRF---LPEFPGCSLLKELHVGEN-QIEM-LPAEHLKHLN 252 (565)
T ss_pred HHHHHhcccchh-hhh--cCChhhcchhhhHHHHhhhc-cccc---CCCCCccHHHHHHHhccc-HHHh-hHHHHhcccc
Confidence 566777766542 111 12233335556666666655 3332 125566677777766432 1110 0112223334
Q ss_pred cccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCc
Q 012255 201 KLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCV 272 (467)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 272 (467)
++..|.+-...-. ..|.......+|+.|++++.+ + .+++.-++++ +|+.|.+.|.+
T Consensus 253 ~l~vLDLRdNklk------------e~Pde~clLrsL~rLDlSNN~-i--s~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 253 SLLVLDLRDNKLK------------EVPDEICLLRSLERLDLSNND-I--SSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cceeeeccccccc------------cCchHHHHhhhhhhhcccCCc-c--ccCCcccccc-eeeehhhcCCc
Confidence 4444444222111 111112345678888888755 2 2344445666 78888888776
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.41 E-value=0.024 Score=50.71 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=33.8
Q ss_pred CCCCc----hHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhcc
Q 012255 1 MDTLP----DHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQR 40 (467)
Q Consensus 1 i~~LP----~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~ 40 (467)
|..|| +++...||+||. ..+++++-+|||+|+.+...+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~dg~ 117 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSDGM 117 (499)
T ss_pred HHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhccch
Confidence 45789 999999999995 9999999999999999855443
No 69
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.17 E-value=0.021 Score=50.60 Aligned_cols=39 Identities=23% Similarity=0.521 Sum_probs=31.6
Q ss_pred CCCCchHHHHHHHccCC----CcchhhHHHHhhhHHHhhhhhc
Q 012255 1 MDTLPDHLVWEILGRIK----KTVDRNSASLACKRFYEVDNEQ 39 (467)
Q Consensus 1 i~~LP~ell~~If~~L~----~~~~~~~~~~vck~w~~~~~~~ 39 (467)
|..||||||..||..+- |.+++-.++.|||.|+...+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence 46899999999999543 3577889999999999875543
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.89 E-value=0.16 Score=48.02 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=17.5
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccC
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMC 271 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 271 (467)
++|+.|.+.+|.... +.. .-..+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~---LP~--~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII---LPE--KLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc---Ccc--cccccCcEEEeccc
Confidence 577777777765331 110 11246777777643
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.02 E-value=0.088 Score=41.12 Aligned_cols=34 Identities=35% Similarity=0.337 Sum_probs=17.4
Q ss_pred CCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecC
Q 012255 381 AHYLEILELARCQEISDEGLQLACQFPHLSILRLRK 416 (467)
Q Consensus 381 ~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~ 416 (467)
+|.++.|++.+ +.+.|...+ ++.+|.|+.|+++.
T Consensus 76 f~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 76 FPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRF 109 (177)
T ss_pred cchhhhhhcch-hhhhhchHH-HhhhHHhhhccccc
Confidence 44555555554 344444433 44555555555555
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.53 E-value=0.1 Score=27.15 Aligned_cols=21 Identities=38% Similarity=0.533 Sum_probs=8.8
Q ss_pred CCCCEEeecCCCCcCHHHHHHh
Q 012255 382 HYLEILELARCQEISDEGLQLA 403 (467)
Q Consensus 382 ~~L~~L~l~~c~~it~~~~~~l 403 (467)
++|+.|+|++| .+++.++.++
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 34555555543 2455444443
No 73
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.74 E-value=0.12 Score=43.26 Aligned_cols=62 Identities=26% Similarity=0.194 Sum_probs=36.6
Q ss_pred hcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccccccccccccc
Q 012255 119 ASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKN 183 (467)
Q Consensus 119 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 183 (467)
..++.|..|.+..+ .++..+ +.+...+|+|+.|.+.++ .+...+-+.-+..||+|++|.+-+
T Consensus 61 p~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred CCccccceEEecCC-cceeec-cchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecC
Confidence 35566777777654 454433 234445677777777776 444433444555677777776654
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.50 E-value=0.29 Score=26.59 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=18.5
Q ss_pred CCCCeeccCCCCCCCHHHHHHHHhhcc
Q 012255 432 HKLDLLAVEDCPQVSERGVQGAARSVS 458 (467)
Q Consensus 432 ~~L~~L~l~~c~~~~~~~~~~l~~~~~ 458 (467)
++|+.|+++++. ++++++..+++.++
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHHhc
Confidence 467777777775 77777777776553
No 75
>PF13013 F-box-like_2: F-box-like domain
Probab=91.47 E-value=0.2 Score=37.64 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhh
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACK 30 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck 30 (467)
+.+||+||+..||++.. ..+...+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 46899999999999996 778877777777
No 76
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.08 E-value=0.24 Score=41.54 Aligned_cols=82 Identities=20% Similarity=0.158 Sum_probs=54.0
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHH-HHHhcCCCCCCEEeecCCCCCCccchH---hhhcCCCC
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEG-LQLACQFPHLSILRLRKCLGVTDDGLK---PLVGSHKL 434 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~-~~~l~~~~~L~~L~l~~c~~it~~~~~---~l~~~~~L 434 (467)
|.+|.++.+ .|+...-..-.-+|+|..|.+.+ +++..-+ +.-++.||.|+.|.+-+.+ ++...-. .+...|+|
T Consensus 66 L~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 66 LHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred cceEEecCC-cceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcc
Confidence 999999885 45543322222478999999988 4443322 5556689999999999844 6544322 22338999
Q ss_pred CeeccCCCC
Q 012255 435 DLLAVEDCP 443 (467)
Q Consensus 435 ~~L~l~~c~ 443 (467)
+.|++.+-.
T Consensus 143 ~~LDF~kVt 151 (233)
T KOG1644|consen 143 RTLDFQKVT 151 (233)
T ss_pred eEeehhhhh
Confidence 999885543
No 77
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=89.45 E-value=0.012 Score=47.53 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=27.0
Q ss_pred CCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccccccccccc
Q 012255 121 CLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLI 181 (467)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 181 (467)
+.+...|.++.+ +++. ++.-...+.+|+.|++.++ .+.+ +...++.+++|+.|.+
T Consensus 32 ~s~ITrLtLSHN-Kl~~--vppnia~l~nlevln~~nn-qie~--lp~~issl~klr~lnv 86 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTV--VPPNIAELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNV 86 (264)
T ss_pred hhhhhhhhcccC-ceee--cCCcHHHhhhhhhhhcccc-hhhh--cChhhhhchhhhheec
Confidence 345555555543 3322 1111224566777776655 3322 4445555666666654
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.93 E-value=0.49 Score=45.57 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=18.1
Q ss_pred cCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCC
Q 012255 404 CQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDC 442 (467)
Q Consensus 404 ~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 442 (467)
..+++++.|++++ +.+++... +....+++.|++++.
T Consensus 252 ~~l~~l~~L~~s~-n~i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 252 GNLSNLETLDLSN-NQISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccceecccc-cccccccc--ccccCccCEEeccCc
Confidence 3455566666665 33444322 333555666655554
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.06 E-value=0.51 Score=45.46 Aligned_cols=79 Identities=28% Similarity=0.265 Sum_probs=44.3
Q ss_pred CCCCEEeecCCCCCChHhHHHHh-cC-CCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLA-SC-LNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLE 174 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~-~~-~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 174 (467)
+.++.|++.+. .+++ +.... .. ++|+.|++++. .+.. ++.-...+++|+.|++..+ .+.+ +.......+
T Consensus 116 ~~l~~L~l~~n-~i~~--i~~~~~~~~~nL~~L~l~~N-~i~~--l~~~~~~l~~L~~L~l~~N-~l~~--l~~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNN-NITD--IPPLIGLLKSNLKELDLSDN-KIES--LPSPLRNLPNLKNLDLSFN-DLSD--LPKLLSNLS 186 (394)
T ss_pred cceeEEecCCc-cccc--Cccccccchhhccccccccc-chhh--hhhhhhccccccccccCCc-hhhh--hhhhhhhhh
Confidence 56777777554 4444 22222 33 27888888764 3332 1122447788888888777 4433 222222566
Q ss_pred cccccccccC
Q 012255 175 RLEDLLIKNC 184 (467)
Q Consensus 175 ~L~~L~l~~~ 184 (467)
.|+.|++++.
T Consensus 187 ~L~~L~ls~N 196 (394)
T COG4886 187 NLNNLDLSGN 196 (394)
T ss_pred hhhheeccCC
Confidence 7777777654
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.73 E-value=0.14 Score=40.25 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=2.4
Q ss_pred CCCEEeec
Q 012255 408 HLSILRLR 415 (467)
Q Consensus 408 ~L~~L~l~ 415 (467)
+|+.+.+.
T Consensus 104 ~l~~i~~~ 111 (129)
T PF13306_consen 104 NLKEINIP 111 (129)
T ss_dssp T--EEE-T
T ss_pred CceEEEEC
Confidence 45554444
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.84 E-value=0.43 Score=37.36 Aligned_cols=59 Identities=12% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVED 441 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~ 441 (467)
+..+++|+.+.+.+ .+...+-..+..+++|+.+.+.. +++..+...+.++ +|+.+.+.+
T Consensus 54 F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 54 FSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred eecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 34577788888864 33322234555788999999876 3666566666666 788887764
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=79.17 E-value=0.76 Score=45.79 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=32.9
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhh
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNE 38 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~ 38 (467)
|..||.|+...||.||+ .++...+++||+.|+.+...
T Consensus 108 i~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred hhcccchhcccccccCC-HHHhhhhhhhcchhhhhhhc
Confidence 45799999999999996 89999999999999998533
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=78.56 E-value=1.1 Score=43.53 Aligned_cols=82 Identities=28% Similarity=0.222 Sum_probs=44.7
Q ss_pred hhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccc
Q 012255 94 NSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKL 173 (467)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 173 (467)
..+++|++|++++. .+++ +..+..++.|+.|++.++ .++... -+..+++|+.+++.++ .+....... ...+
T Consensus 115 ~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N-~i~~~~---~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~ 185 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGN-LISDIS---GLESLKSLKLLDLSYN-RIVDIENDE-LSEL 185 (414)
T ss_pred hhhhcchheecccc-cccc--ccchhhccchhhheeccC-cchhcc---CCccchhhhcccCCcc-hhhhhhhhh-hhhc
Confidence 45677777777765 5555 444555566777777765 232211 1113666777777766 333221111 3555
Q ss_pred ccccccccccC
Q 012255 174 ERLEDLLIKNC 184 (467)
Q Consensus 174 ~~L~~L~l~~~ 184 (467)
.+|+.+.+.+.
T Consensus 186 ~~l~~l~l~~n 196 (414)
T KOG0531|consen 186 ISLEELDLGGN 196 (414)
T ss_pred cchHHHhccCC
Confidence 66666666543
No 84
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=75.02 E-value=6 Score=36.09 Aligned_cols=31 Identities=6% Similarity=0.145 Sum_probs=14.7
Q ss_pred HHHHHHHhCC-CcEeeccccccccHHHHHHHH
Q 012255 349 GILTLIQKCP-VRELSLDYVYSFNDVGMEALC 379 (467)
Q Consensus 349 ~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~ 379 (467)
.+..+-+.-+ ++..+|.+...|+...+..+.
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~ 220 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFS 220 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHH
Confidence 3344434344 555555555555544444433
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=74.89 E-value=2.8 Score=19.56 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=4.0
Q ss_pred CCCEEeecCC
Q 012255 408 HLSILRLRKC 417 (467)
Q Consensus 408 ~L~~L~l~~c 417 (467)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444443
No 86
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=71.44 E-value=3.2 Score=22.01 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=11.3
Q ss_pred cceeeccccCccCchhHHHHHhcCC
Q 012255 237 MVELSLKNCIISPGRGLACVLGKCR 261 (467)
Q Consensus 237 L~~L~l~~~~~~~~~~l~~l~~~~~ 261 (467)
|+.|++....+..+..+..++++||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4445554444333334555555444
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=65.83 E-value=4.5 Score=31.97 Aligned_cols=88 Identities=25% Similarity=0.246 Sum_probs=48.6
Q ss_pred HHHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCC
Q 012255 57 TSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRIT 136 (467)
Q Consensus 57 ~~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 136 (467)
...+.+..+|+.++++..++ ..+.. .+...+|.++.|++.+. .+++...+ ++.++.|+.|+++.+.-..
T Consensus 46 vy~l~~~~el~~i~ls~N~f-----k~fp~----kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGF-----KKFPK----KFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred HHHHhCCceEEEEecccchh-----hhCCH----HHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCcccc
Confidence 34445555677777775544 22322 33345677788888765 56664444 6677788888887653222
Q ss_pred hhhHHHHHhcCCCCcEEeccCC
Q 012255 137 GCGILSVVVGCKNLTVLHLIRC 158 (467)
Q Consensus 137 ~~~l~~~~~~~~~L~~L~l~~~ 158 (467)
.. .....+.+|-.|+..+.
T Consensus 115 ~p---~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 115 EP---RVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ch---HHHHHHHhHHHhcCCCC
Confidence 21 22223555555555443
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=65.33 E-value=5.7 Score=34.87 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhh
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNE 38 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~ 38 (467)
+.+||.|++..|+..++|.+|+..++.|-...+.+...
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 46899999999999999999999999987666655433
No 89
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=63.91 E-value=3.3 Score=40.18 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=65.2
Q ss_pred cCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHH
Q 012255 323 NCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQ 401 (467)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~ 401 (467)
.+.+|+.|.+.+ +.+.. +..+...++ |+.|+++++ .|++ +..+..++.|+.|+++++ .+++ +.
T Consensus 93 ~~~~l~~l~l~~--------n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N-~i~~--~~ 156 (414)
T KOG0531|consen 93 KLKSLEALDLYD--------NKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGN-LISD--IS 156 (414)
T ss_pred cccceeeeeccc--------cchhh--cccchhhhhcchheecccc-cccc--ccchhhccchhhheeccC-cchh--cc
Confidence 467888888866 22221 222133455 999999985 3333 333445667999999884 4443 33
Q ss_pred HhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCC
Q 012255 402 LACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQ 444 (467)
Q Consensus 402 ~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~ 444 (467)
.+..+++|+.+++.++. +++..-..+..+.+++.+++.++..
T Consensus 157 ~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCch
Confidence 33347788899999854 5543221034578999999998863
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.74 E-value=18 Score=35.68 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=60.8
Q ss_pred ccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcc-c-chhHHHHHHHhCCCCCeeeeccCCCCCccccccC
Q 012255 231 RVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVG-V-RDSDIINMAQTSSKLRSISLRVPSDFSLPILMSN 308 (467)
Q Consensus 231 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 308 (467)
....|.+..+++++..-..-+.+..+....|+|+.|.|++... + ....+..+ +...|++|-+.+.+.
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPl--------- 282 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPL--------- 282 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcc---------
Confidence 4466788888888876555577777888899999999998621 1 12222222 346788898888663
Q ss_pred CCCCC--HHHHHHHHhcCCCCCeEEe
Q 012255 309 PLRLT--DESLKALADNCRMLESVRI 332 (467)
Q Consensus 309 ~~~~~--~~~l~~l~~~~~~L~~L~l 332 (467)
|+... ...+.++.+.+|+|..|+=
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeecC
Confidence 22332 2345667778899988853
No 91
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=52.13 E-value=31 Score=31.72 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=63.8
Q ss_pred hhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhC---CCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCC
Q 012255 251 RGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTS---SKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRML 327 (467)
Q Consensus 251 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 327 (467)
..+..+-..-++++.+++.....+....+..+..++ +..+.+.+.+.+ ....-..++..+.+-++.|
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr----------~~d~vA~a~a~ml~~n~sl 257 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTR----------SSDPVAFAIAEMLKENKSL 257 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhccc----------CCchhHHHHHHHHhhcchh
Confidence 344555556678888888877777766666655443 567777776633 1222333455555668999
Q ss_pred CeEEecccCCCCCccccccHHHHHHHHHhCC----CcEeeccc
Q 012255 328 ESVRISFSDGEFPSISSFTLDGILTLIQKCP----VRELSLDY 366 (467)
Q Consensus 328 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~----L~~L~l~~ 366 (467)
++|++.+ +.+++.++.++..... |..+.+.+
T Consensus 258 ~slnves--------nFItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 258 TSLNVES--------NFITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred hheeccc--------cccccHHHHHHHHHHhccchhhHhhhhh
Confidence 9999988 8889988888865433 55554444
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.40 E-value=36 Score=33.67 Aligned_cols=71 Identities=18% Similarity=0.103 Sum_probs=42.8
Q ss_pred HHHHHhhCCCCCEEeecCCCCCChHhHHHHh-cCCCCceeeccCCCCC--ChhhHHHHHhcCCCCcEEeccCCccc
Q 012255 89 LLILSNSCPYLTDLTLNYCTFITDVGLCYLA-SCLNLSTLKLKFTTRI--TGCGILSVVVGCKNLTVLHLIRCLNV 161 (467)
Q Consensus 89 l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~ 161 (467)
+..+..+.|.+..+++++..-..-.++..++ ..|+|+.|+|+++... +...+.. -....|++|.+.+++..
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLC 283 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccc
Confidence 4566667788888888776433334456666 6788888888875211 1122221 13446788888876543
No 93
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=43.90 E-value=28 Score=26.86 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=8.9
Q ss_pred HHHHHhcCCCCcEEeccC
Q 012255 140 ILSVVVGCKNLTVLHLIR 157 (467)
Q Consensus 140 l~~~~~~~~~L~~L~l~~ 157 (467)
+...+.+|+.|.. ++..
T Consensus 53 m~~mF~~~~~l~~-dls~ 69 (120)
T PF03382_consen 53 MSGMFAGCSSLNQ-DLSN 69 (120)
T ss_pred HHHHHhhhhhcCC-Cccc
Confidence 3445555666655 5543
No 94
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=38.19 E-value=30 Score=26.65 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=3.6
Q ss_pred HHHhcCCCC
Q 012255 255 CVLGKCRNL 263 (467)
Q Consensus 255 ~l~~~~~~L 263 (467)
..+..|..|
T Consensus 80 ~mF~~~~~l 88 (120)
T PF03382_consen 80 NMFSGCSSL 88 (120)
T ss_pred HHHhhhHHc
Confidence 333444444
No 95
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=34.22 E-value=27 Score=17.36 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=6.4
Q ss_pred CCEEeecCCCCCC
Q 012255 409 LSILRLRKCLGVT 421 (467)
Q Consensus 409 L~~L~l~~c~~it 421 (467)
|+.|++++| +++
T Consensus 2 L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGN-NLT 13 (22)
T ss_dssp ESEEEETSS-EES
T ss_pred ccEEECCCC-cCE
Confidence 555666654 344
No 96
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=33.07 E-value=1.3e+02 Score=20.27 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHh-----CCCCCeeee
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQT-----SSKLRSISL 294 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l 294 (467)
.+++.+.+.+...++...+.. -+-+.+.+..+. ++..++..+... .|+|+.+.+
T Consensus 11 ~~~~~l~i~~~~~it~~~Ll~-----~nc~~i~l~~~~-~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 11 RNLEKLSISSSNWITLDDLLN-----MNCKKIELWNSK-FTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCCEEEEccCCcccHHHHHh-----cCCCEEEEECCC-CCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 456666665433333222221 134445554433 556666555443 255555543
No 97
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=22.60 E-value=98 Score=15.84 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=4.3
Q ss_pred CCCEEeecC
Q 012255 408 HLSILRLRK 416 (467)
Q Consensus 408 ~L~~L~l~~ 416 (467)
+|+.|++.+
T Consensus 3 ~L~~L~L~~ 11 (26)
T smart00369 3 NLRELDLSN 11 (26)
T ss_pred CCCEEECCC
Confidence 444444444
No 98
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=22.60 E-value=98 Score=15.84 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=4.3
Q ss_pred CCCEEeecC
Q 012255 408 HLSILRLRK 416 (467)
Q Consensus 408 ~L~~L~l~~ 416 (467)
+|+.|++.+
T Consensus 3 ~L~~L~L~~ 11 (26)
T smart00370 3 NLRELDLSN 11 (26)
T ss_pred CCCEEECCC
Confidence 444444444
Done!