Query 012255
Match_columns 467
No_of_seqs 206 out of 2851
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 05:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 2.6E-39 8.8E-44 327.5 34.4 446 1-461 6-534 (594)
2 3ogk_B Coronatine-insensitive 100.0 4.9E-38 1.7E-42 317.9 34.6 432 2-463 14-518 (592)
3 2p1m_B Transport inhibitor res 100.0 2.6E-28 9E-33 246.8 31.1 185 233-442 336-541 (594)
4 3ogk_B Coronatine-insensitive 100.0 4.1E-28 1.4E-32 245.2 27.6 367 54-461 102-541 (592)
5 2ast_B S-phase kinase-associat 100.0 4.1E-27 1.4E-31 220.6 25.2 281 1-403 9-291 (336)
6 1z7x_W Ribonuclease inhibitor; 99.9 8.5E-25 2.9E-29 214.0 26.4 362 53-459 17-424 (461)
7 1z7x_W Ribonuclease inhibitor; 99.9 1.4E-23 4.9E-28 205.3 34.1 363 55-463 47-460 (461)
8 2ast_B S-phase kinase-associat 99.8 2.4E-19 8.1E-24 167.7 23.7 279 82-429 10-292 (336)
9 4fmz_A Internalin; leucine ric 99.8 2.6E-19 8.9E-24 168.2 22.5 305 61-446 41-346 (347)
10 4fmz_A Internalin; leucine ric 99.8 1.2E-18 4.2E-23 163.6 18.4 297 95-464 42-339 (347)
11 2ca6_A RAN GTPase-activating p 99.8 3.4E-17 1.2E-21 155.9 21.9 201 232-459 91-331 (386)
12 1o6v_A Internalin A; bacterial 99.7 6.6E-17 2.2E-21 157.9 20.5 300 60-443 64-364 (466)
13 1o6v_A Internalin A; bacterial 99.7 1E-16 3.6E-21 156.5 20.8 301 62-447 44-345 (466)
14 3v47_A TOLL-like receptor 5B a 99.7 3.2E-18 1.1E-22 166.9 9.1 335 64-443 30-406 (455)
15 2ca6_A RAN GTPase-activating p 99.7 3.9E-16 1.3E-20 148.6 20.4 99 84-184 16-132 (386)
16 3t6q_A CD180 antigen; protein- 99.7 1.5E-18 5.3E-23 175.5 2.9 61 380-443 474-534 (606)
17 2id5_A Lingo-1, leucine rich r 99.7 2.8E-18 9.6E-23 168.4 4.2 303 64-447 32-335 (477)
18 3t6q_A CD180 antigen; protein- 99.7 2.2E-18 7.4E-23 174.4 3.2 304 98-446 255-561 (606)
19 2z7x_B TOLL-like receptor 1, v 99.7 1.7E-16 5.8E-21 157.4 13.9 160 258-447 321-483 (520)
20 3v47_A TOLL-like receptor 5B a 99.7 1.8E-17 6.1E-22 161.7 6.4 321 96-447 29-385 (455)
21 3rgz_A Protein brassinosteroid 99.7 6.6E-18 2.3E-22 175.1 1.9 87 356-446 416-503 (768)
22 3vq2_A TLR4, TOLL-like recepto 99.7 7.5E-18 2.6E-22 170.5 1.6 82 359-444 475-557 (606)
23 3o6n_A APL1; leucine-rich repe 99.7 8.8E-17 3E-21 153.4 8.3 322 62-459 43-365 (390)
24 3rgz_A Protein brassinosteroid 99.7 9.7E-18 3.3E-22 173.8 1.7 349 61-443 148-525 (768)
25 2z81_A CD282 antigen, TOLL-lik 99.7 8.9E-16 3E-20 153.4 15.6 132 64-209 26-157 (549)
26 3vq2_A TLR4, TOLL-like recepto 99.7 7.6E-18 2.6E-22 170.5 0.3 84 359-446 450-534 (606)
27 2z63_A TOLL-like receptor 4, v 99.7 4.3E-18 1.5E-22 171.0 -1.5 110 323-443 419-529 (570)
28 2id5_A Lingo-1, leucine rich r 99.7 3.1E-17 1E-21 161.0 3.9 279 96-446 31-309 (477)
29 2z81_A CD282 antigen, TOLL-lik 99.6 3.7E-16 1.3E-20 156.1 9.2 183 96-298 25-207 (549)
30 2z63_A TOLL-like receptor 4, v 99.6 1.3E-17 4.3E-22 167.6 -1.7 112 60-184 48-159 (570)
31 3goz_A Leucine-rich repeat-con 99.6 7.7E-15 2.6E-19 138.3 14.8 267 127-454 3-305 (362)
32 1ziw_A TOLL-like receptor 3; i 99.6 2.6E-16 8.8E-21 161.4 4.1 342 63-443 221-595 (680)
33 4eco_A Uncharacterized protein 99.6 3.5E-16 1.2E-20 158.4 5.1 347 59-443 201-598 (636)
34 3e4g_A ATP synthase subunit S, 99.6 9E-16 3.1E-20 125.5 6.0 102 359-461 63-170 (176)
35 3goz_A Leucine-rich repeat-con 99.6 6.2E-14 2.1E-18 132.0 19.1 173 235-429 109-305 (362)
36 3bz5_A Internalin-J, INLJ; leu 99.6 7.3E-15 2.5E-19 142.4 12.9 297 61-447 39-353 (457)
37 3oja_B Anopheles plasmodium-re 99.6 1.4E-15 4.7E-20 153.1 7.9 318 63-456 50-368 (597)
38 4ecn_A Leucine-rich repeat pro 99.6 2.4E-15 8.2E-20 155.4 9.7 351 59-443 443-838 (876)
39 4ecn_A Leucine-rich repeat pro 99.6 2E-15 6.7E-20 156.1 8.9 334 62-446 489-873 (876)
40 1ziw_A TOLL-like receptor 3; i 99.6 6.1E-16 2.1E-20 158.6 3.9 294 60-392 45-363 (680)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.2E-15 1.1E-19 149.6 8.7 160 258-447 350-512 (562)
42 3o6n_A APL1; leucine-rich repe 99.6 3.1E-15 1.1E-19 142.6 7.8 298 58-430 63-361 (390)
43 2z7x_B TOLL-like receptor 1, v 99.6 6.9E-15 2.4E-19 145.8 9.6 210 64-298 21-258 (520)
44 4eco_A Uncharacterized protein 99.6 1.8E-15 6.2E-20 153.2 5.4 332 62-445 247-632 (636)
45 3bz5_A Internalin-J, INLJ; leu 99.5 1.7E-14 5.9E-19 139.8 9.9 275 95-447 40-332 (457)
46 3oja_B Anopheles plasmodium-re 99.5 1.6E-14 5.6E-19 145.3 7.7 292 58-424 69-361 (597)
47 2z80_A TOLL-like receptor 2, v 99.5 4.4E-14 1.5E-18 132.7 9.7 83 97-184 52-134 (353)
48 2z80_A TOLL-like receptor 2, v 99.5 9.9E-14 3.4E-18 130.3 11.1 182 64-298 52-233 (353)
49 3j0a_A TOLL-like receptor 5; m 99.5 1.2E-15 4E-20 159.9 -2.5 82 359-443 292-373 (844)
50 3j0a_A TOLL-like receptor 5; m 99.5 3.6E-15 1.2E-19 156.2 0.8 126 287-443 266-392 (844)
51 3e4g_A ATP synthase subunit S, 99.4 9.8E-14 3.4E-18 113.4 5.9 102 325-435 61-170 (176)
52 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 2.8E-13 9.6E-18 135.5 8.7 126 64-210 52-179 (562)
53 3zyj_A Leucine-rich repeat-con 99.4 1.6E-13 5.6E-18 132.8 6.4 62 380-443 229-290 (440)
54 4g8a_A TOLL-like receptor 4; l 99.4 2.5E-14 8.7E-19 145.4 0.6 88 356-446 492-581 (635)
55 1xku_A Decorin; proteoglycan, 99.4 9.4E-14 3.2E-18 129.2 4.4 81 359-443 218-304 (330)
56 3zyi_A Leucine-rich repeat-con 99.4 2E-13 7E-18 132.6 6.9 65 378-444 238-302 (452)
57 3un9_A NLR family member X1; l 99.4 6.6E-12 2.2E-16 117.9 16.1 188 234-448 71-285 (372)
58 2z66_A Variable lymphocyte rec 99.4 2.1E-14 7.1E-19 132.1 -1.0 62 380-443 197-259 (306)
59 3o53_A Protein LRIM1, AGAP0063 99.4 8.1E-13 2.8E-17 122.0 8.9 154 89-297 26-179 (317)
60 2ft3_A Biglycan; proteoglycan, 99.4 5.7E-14 2E-18 130.7 0.0 64 378-443 260-331 (332)
61 4g8a_A TOLL-like receptor 4; l 99.4 5.1E-14 1.8E-18 143.1 -0.5 186 233-446 369-555 (635)
62 3un9_A NLR family member X1; l 99.3 1.7E-11 5.8E-16 115.1 16.0 170 260-455 71-261 (372)
63 1xku_A Decorin; proteoglycan, 99.3 8.8E-13 3E-17 122.6 7.1 269 97-442 52-329 (330)
64 1ozn_A Reticulon 4 receptor; N 99.3 1.7E-13 5.6E-18 124.7 1.4 83 97-183 32-114 (285)
65 1ogq_A PGIP-2, polygalacturona 99.3 2E-14 6.9E-19 132.4 -5.0 63 380-445 242-304 (313)
66 4fcg_A Uncharacterized protein 99.3 2.1E-13 7.2E-18 126.4 1.3 80 97-184 81-160 (328)
67 2ft3_A Biglycan; proteoglycan, 99.3 6.6E-13 2.3E-17 123.5 4.6 37 381-418 293-331 (332)
68 1ozn_A Reticulon 4 receptor; N 99.3 5.6E-13 1.9E-17 121.1 2.5 63 380-444 175-237 (285)
69 3oja_A Leucine-rich immune mol 99.3 4.5E-12 1.5E-16 123.9 7.0 148 95-297 32-179 (487)
70 3zyj_A Leucine-rich repeat-con 99.3 5.5E-12 1.9E-16 122.1 7.4 83 97-184 64-146 (440)
71 3zyi_A Leucine-rich repeat-con 99.3 2.2E-12 7.4E-17 125.3 4.5 83 97-184 75-157 (452)
72 3g06_A SSPH2 (leucine-rich rep 99.3 1.1E-10 3.8E-15 116.7 16.6 264 65-454 41-305 (622)
73 2z66_A Variable lymphocyte rec 99.2 1.4E-13 4.9E-18 126.5 -4.4 158 97-298 28-186 (306)
74 3o53_A Protein LRIM1, AGAP0063 99.2 2.6E-12 8.9E-17 118.6 2.0 252 51-418 21-273 (317)
75 1ogq_A PGIP-2, polygalacturona 99.2 6.8E-13 2.3E-17 122.2 -3.3 83 359-446 199-281 (313)
76 1wwl_A Monocyte differentiatio 99.2 2.7E-12 9.3E-17 118.1 0.6 59 380-446 251-309 (312)
77 1wwl_A Monocyte differentiatio 99.2 6.8E-13 2.3E-17 122.2 -4.0 38 382-423 274-311 (312)
78 4glp_A Monocyte differentiatio 99.2 1.2E-11 4.1E-16 113.7 3.7 58 382-447 251-308 (310)
79 1h6u_A Internalin H; cell adhe 99.1 3E-10 1E-14 104.1 11.0 55 97-158 41-95 (308)
80 4ezg_A Putative uncharacterize 99.1 1.9E-10 6.3E-15 98.1 8.5 81 359-446 114-194 (197)
81 1jl5_A Outer protein YOPM; leu 99.1 2.8E-10 9.6E-15 110.1 10.4 73 359-443 319-407 (454)
82 4fcg_A Uncharacterized protein 99.1 6.6E-11 2.3E-15 109.5 5.1 223 173-442 80-311 (328)
83 1h6u_A Internalin H; cell adhe 99.1 4.5E-10 1.6E-14 102.9 10.5 192 146-422 39-231 (308)
84 3g06_A SSPH2 (leucine-rich rep 99.1 1.8E-09 6E-14 108.0 15.6 171 64-297 61-231 (622)
85 2ra8_A Uncharacterized protein 99.1 1.2E-09 4E-14 101.8 12.5 155 253-455 164-329 (362)
86 3sb4_A Hypothetical leucine ri 99.1 2.6E-11 8.9E-16 112.5 1.3 115 311-439 212-328 (329)
87 3oja_A Leucine-rich immune mol 99.0 2.2E-11 7.4E-16 119.1 0.5 179 54-298 24-202 (487)
88 1jl5_A Outer protein YOPM; leu 99.0 2E-09 6.9E-14 104.1 12.6 151 235-443 215-368 (454)
89 3rfs_A Internalin B, repeat mo 99.0 2.1E-10 7.2E-15 103.2 4.7 177 234-444 40-217 (272)
90 4glp_A Monocyte differentiatio 99.0 2.8E-10 9.6E-15 104.5 5.4 233 97-423 64-309 (310)
91 1io0_A Tropomodulin; LRR prote 99.0 5.9E-09 2E-13 87.6 12.1 122 316-449 27-167 (185)
92 2z62_A TOLL-like receptor 4, v 99.0 2.5E-10 8.6E-15 103.0 3.6 35 408-443 201-235 (276)
93 2o6q_A Variable lymphocyte rec 99.0 9.5E-11 3.2E-15 105.4 0.7 179 235-443 37-216 (270)
94 4ezg_A Putative uncharacterize 98.9 3.1E-09 1E-13 90.5 8.3 82 95-183 64-145 (197)
95 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.1E-09 3.8E-14 70.7 4.2 42 1-43 9-50 (53)
96 2z62_A TOLL-like receptor 4, v 98.9 4.2E-10 1.4E-14 101.5 2.6 82 97-183 28-109 (276)
97 1h6t_A Internalin B; cell adhe 98.9 4E-09 1.4E-13 95.7 8.9 165 235-443 46-211 (291)
98 2xwt_C Thyrotropin receptor; s 98.9 1.2E-10 4.1E-15 102.7 -2.1 59 382-444 179-238 (239)
99 1m9s_A Internalin B; cell inva 98.8 5.7E-09 2E-13 104.2 9.1 76 359-443 133-208 (605)
100 1h6t_A Internalin B; cell adhe 98.8 2.4E-08 8.3E-13 90.5 12.3 80 94-184 65-144 (291)
101 3rfs_A Internalin B, repeat mo 98.8 3.4E-09 1.2E-13 95.3 6.1 179 61-298 38-216 (272)
102 1io0_A Tropomodulin; LRR prote 98.8 3E-08 1E-12 83.2 11.1 115 347-464 25-154 (185)
103 2o6q_A Variable lymphocyte rec 98.8 4.2E-09 1.5E-13 94.5 5.9 83 97-184 37-119 (270)
104 1m9s_A Internalin B; cell inva 98.8 1E-08 3.5E-13 102.3 8.4 57 233-297 151-207 (605)
105 2ra8_A Uncharacterized protein 98.8 2.8E-08 9.7E-13 92.4 10.4 224 53-334 94-339 (362)
106 1p9a_G Platelet glycoprotein I 98.8 1.8E-09 6.2E-14 97.9 2.0 185 235-453 31-216 (290)
107 3m19_A Variable lymphocyte rec 98.8 3.2E-09 1.1E-13 94.2 3.6 156 235-443 35-190 (251)
108 2xwt_C Thyrotropin receptor; s 98.7 3.3E-10 1.1E-14 99.8 -3.8 182 235-446 31-218 (239)
109 3sb4_A Hypothetical leucine ri 98.7 1.1E-08 3.6E-13 94.8 5.3 105 324-442 201-307 (329)
110 2je0_A Acidic leucine-rich nuc 98.6 2.3E-08 8E-13 80.7 4.6 59 380-440 86-148 (149)
111 2je0_A Acidic leucine-rich nuc 98.6 4E-08 1.4E-12 79.4 4.9 83 233-334 15-97 (149)
112 1p9a_G Platelet glycoprotein I 98.6 1.7E-08 5.9E-13 91.4 2.4 178 232-446 7-185 (290)
113 2ell_A Acidic leucine-rich nuc 98.6 2E-08 6.8E-13 83.0 2.5 61 381-443 94-158 (168)
114 3m19_A Variable lymphocyte rec 98.5 4.1E-08 1.4E-12 87.0 3.5 33 98-131 36-68 (251)
115 1xeu_A Internalin C; cellular 98.5 7.7E-08 2.6E-12 85.8 4.8 148 233-423 39-187 (263)
116 2ell_A Acidic leucine-rich nuc 98.5 2.7E-08 9.3E-13 82.2 1.2 134 232-418 21-158 (168)
117 1xeu_A Internalin C; cellular 98.5 2E-07 6.9E-12 83.0 6.9 56 96-158 40-95 (263)
118 1pgv_A TMD-1, tropomodulin TMD 98.4 1.1E-06 3.7E-11 73.2 9.8 121 314-443 30-168 (197)
119 4fs7_A Uncharacterized protein 98.4 5E-08 1.7E-12 92.6 1.7 80 356-441 295-375 (394)
120 2v70_A SLIT-2, SLIT homolog 2 98.3 8.7E-08 3E-12 82.9 1.4 62 380-443 103-164 (220)
121 4fdw_A Leucine rich hypothetic 98.3 6.4E-08 2.2E-12 91.7 0.0 79 356-440 298-378 (401)
122 2v9t_B SLIT homolog 2 protein 98.3 1.2E-07 4.1E-12 82.0 1.2 61 381-443 103-163 (220)
123 2o6s_A Variable lymphocyte rec 98.3 1.7E-07 5.9E-12 80.3 2.2 37 380-417 122-158 (208)
124 4ay9_X Follicle-stimulating ho 98.2 5.9E-08 2E-12 90.6 -3.5 13 379-391 243-255 (350)
125 2xot_A Amphoterin-induced prot 98.2 1.2E-07 4.2E-12 88.8 -1.4 161 234-447 38-204 (361)
126 1pgv_A TMD-1, tropomodulin TMD 98.2 3E-05 1E-09 64.5 12.6 98 359-458 43-154 (197)
127 3e6j_A Variable lymphocyte rec 98.2 5.4E-07 1.8E-11 78.5 2.0 38 405-443 133-170 (229)
128 1a9n_A U2A', U2A'; complex (nu 98.2 5.6E-07 1.9E-11 74.8 2.1 63 379-443 85-151 (176)
129 4gt6_A Cell surface protein; l 98.1 5.2E-07 1.8E-11 85.6 1.3 61 378-442 307-367 (394)
130 4ay9_X Follicle-stimulating ho 98.1 1.7E-07 5.8E-12 87.4 -2.0 226 64-334 30-255 (350)
131 1dce_A Protein (RAB geranylger 98.1 1.5E-07 5.1E-12 93.3 -2.5 204 232-463 346-565 (567)
132 4fs7_A Uncharacterized protein 98.1 3.6E-07 1.2E-11 86.7 0.0 77 357-441 275-352 (394)
133 3e6j_A Variable lymphocyte rec 98.1 2.6E-06 8.9E-11 74.1 5.3 59 97-158 40-98 (229)
134 2o6s_A Variable lymphocyte rec 98.1 2.2E-06 7.4E-11 73.4 4.2 59 97-158 28-86 (208)
135 4fdw_A Leucine rich hypothetic 98.0 4.5E-07 1.5E-11 85.8 -1.1 58 380-442 298-355 (401)
136 1ds9_A Outer arm dynein; leuci 98.0 1.4E-06 4.9E-11 73.9 1.6 14 258-271 137-150 (198)
137 3cvr_A Invasion plasmid antige 98.0 1.5E-05 5.1E-10 78.7 8.5 166 235-454 80-251 (571)
138 1ds9_A Outer arm dynein; leuci 98.0 2.4E-06 8.3E-11 72.4 2.3 39 256-298 43-81 (198)
139 1dce_A Protein (RAB geranylger 98.0 4.3E-07 1.5E-11 90.0 -2.9 122 287-439 441-567 (567)
140 1a9n_A U2A', U2A'; complex (nu 97.9 4.4E-06 1.5E-10 69.3 3.6 124 324-463 18-145 (176)
141 3l2o_B F-box only protein 4; s 97.9 1.8E-06 6.2E-11 75.3 0.4 41 1-42 5-45 (312)
142 2wfh_A SLIT homolog 2 protein 97.9 7.6E-06 2.6E-10 69.0 4.1 85 359-446 56-140 (193)
143 1w8a_A SLIT protein; signaling 97.9 3E-06 1E-10 71.4 1.3 84 359-445 56-139 (192)
144 3cvr_A Invasion plasmid antige 97.9 3E-05 1E-09 76.5 8.5 12 260-271 159-170 (571)
145 2xot_A Amphoterin-induced prot 97.8 2.8E-06 9.7E-11 79.4 0.6 67 378-447 108-177 (361)
146 2v70_A SLIT-2, SLIT homolog 2 97.8 6.8E-06 2.3E-10 70.9 2.5 87 356-446 55-142 (220)
147 2v9t_B SLIT homolog 2 protein 97.8 7.6E-06 2.6E-10 70.6 2.1 84 359-446 58-141 (220)
148 2e31_A FBS1, F-box only protei 97.8 5.8E-06 2E-10 73.1 1.3 37 1-38 51-88 (297)
149 4gt6_A Cell surface protein; l 97.7 1.3E-05 4.3E-10 76.0 3.0 308 65-441 65-387 (394)
150 2o6r_A Variable lymphocyte rec 97.7 1.5E-05 5.3E-10 66.0 2.5 84 359-445 54-137 (177)
151 4h09_A Hypothetical leucine ri 97.6 1.4E-05 4.7E-10 75.3 1.3 50 379-432 307-356 (379)
152 2o6r_A Variable lymphocyte rec 97.4 6.3E-05 2.1E-09 62.2 3.3 108 64-185 28-135 (177)
153 3g39_A Variable lymphocyte rec 97.4 8E-05 2.7E-09 61.1 3.2 64 378-443 50-113 (170)
154 2r9u_A Variable lymphocyte rec 97.2 0.00015 5.2E-09 59.7 3.3 64 378-443 53-116 (174)
155 2wfh_A SLIT homolog 2 protein 97.2 0.00032 1.1E-08 58.9 4.6 83 359-446 33-115 (193)
156 3v7d_B Cell division control p 97.1 8.1E-05 2.8E-09 71.9 0.6 36 2-38 16-51 (464)
157 4b8c_D Glucose-repressible alc 97.0 0.00047 1.6E-08 70.6 4.9 64 378-446 266-329 (727)
158 4h09_A Hypothetical leucine ri 97.0 0.00014 4.7E-09 68.4 0.8 296 62-440 44-341 (379)
159 1p22_A F-BOX/WD-repeat protein 97.0 0.00019 6.3E-09 68.8 1.3 40 2-42 12-55 (435)
160 1w8a_A SLIT protein; signaling 97.0 0.00036 1.2E-08 58.5 2.9 66 378-446 50-115 (192)
161 2ovr_B FBW7, F-BOX/WD repeat p 96.9 0.00026 8.8E-09 68.0 2.2 37 1-38 19-55 (445)
162 3g39_A Variable lymphocyte rec 96.7 0.00053 1.8E-08 56.2 2.0 83 97-184 30-112 (170)
163 4b8c_D Glucose-repressible alc 96.7 0.00041 1.4E-08 70.9 1.4 82 95-184 222-303 (727)
164 2r9u_A Variable lymphocyte rec 96.7 0.00059 2E-08 56.1 2.0 83 97-184 33-115 (174)
165 3rw6_A Nuclear RNA export fact 96.5 0.006 2E-07 53.6 7.7 79 380-462 168-255 (267)
166 2ifg_A High affinity nerve gro 96.1 0.0025 8.6E-08 58.9 3.0 63 378-443 52-114 (347)
167 3rw6_A Nuclear RNA export fact 95.9 0.01 3.4E-07 52.1 5.5 90 232-333 167-259 (267)
168 2ifg_A High affinity nerve gro 95.3 0.013 4.5E-07 53.9 4.3 67 378-446 27-93 (347)
169 2lz0_A Uncharacterized protein 78.1 0.65 2.2E-05 33.6 0.9 36 379-416 17-52 (100)
170 3rfe_A Platelet glycoprotein I 72.4 3.3 0.00011 31.4 3.7 33 383-416 32-64 (130)
171 3rfe_A Platelet glycoprotein I 49.0 15 0.00053 27.6 3.6 33 98-131 32-64 (130)
172 2lz0_A Uncharacterized protein 43.5 5.5 0.00019 28.6 0.3 47 394-442 7-53 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.6e-39 Score=327.51 Aligned_cols=446 Identities=20% Similarity=0.251 Sum_probs=303.1
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccceEEeccCCCCchhHHHHHHhhCCCccEEEeeccccccc-
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGWMSR- 79 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~- 79 (467)
+++||+||+.+||+||++.+++.+++.|||+|+.+....+..+.+....... ...+..+|++|++|++++......
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC---HHHHHhhCCCceEEeccCCCchhhc
Confidence 4789999999999999768999999999999999977676776665432221 236778999999999986432111
Q ss_pred -----CCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHh-cCCCCceeeccCCCCCChhhHHHHHhcCCCCcEE
Q 012255 80 -----LGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLA-SCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVL 153 (467)
Q Consensus 80 -----~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 153 (467)
.+......++..+...+++|++|+++++ .+++..+..+. .+++|++|++.+|..+++.++..+...|++|++|
T Consensus 83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 161 (594)
T 2p1m_B 83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKEL 161 (594)
T ss_dssp TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEE
T ss_pred ccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEE
Confidence 1112334567777788999999999998 68888888887 7999999999998788887888888899999999
Q ss_pred eccCCcccCchH---HHHHhcccccccccccccCC-CCChhhHHhhccCcccccccccccccccc-------------cc
Q 012255 154 HLIRCLNVNSVE---WLEYLGKLERLEDLLIKNCR-AIGEGDLIKLGPCWRKLKRLQFEVDVNYR-------------YM 216 (467)
Q Consensus 154 ~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------~~ 216 (467)
++.+|. +++.. +......+++|++|++..+. .++...+..+...+++|+.|.+..+.... ..
T Consensus 162 ~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 162 DLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp ECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred eCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 999884 43221 22223356788888887775 45556666666667777777776431100 00
Q ss_pred c------------------------------chhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEE
Q 012255 217 K------------------------------VYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKI 266 (467)
Q Consensus 217 ~------------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L 266 (467)
+ .........++.....+++|++|+++++. +++..+..++..+++|++|
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L 319 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRL 319 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEE
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEE
Confidence 0 00000000111111246788888888877 6666677777788888888
Q ss_pred EcccCcccchhHHHHHHHhCCCCCeeeeccC--------CCCCcccc-------------ccCCCCCCHHHHHHHHhcCC
Q 012255 267 HLDMCVGVRDSDIINMAQTSSKLRSISLRVP--------SDFSLPIL-------------MSNPLRLTDESLKALADNCR 325 (467)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~-------------~~~~~~~~~~~l~~l~~~~~ 325 (467)
.+.++ +++.++..+...+++|++|++.+| ..+.+.++ ...+..+++.++..+...+|
T Consensus 320 ~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~ 397 (594)
T 2p1m_B 320 WVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397 (594)
T ss_dssp EEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT
T ss_pred eCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC
Confidence 88876 556666667767888888887432 22221111 11234566666666665677
Q ss_pred CCCeEEecccCCCCCcccccc----HHHHHHHHHhCC-CcEeeccccccccHHHHHHHHh-CCCCCEEeecCCCCcCHHH
Q 012255 326 MLESVRISFSDGEFPSISSFT----LDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCS-AHYLEILELARCQEISDEG 399 (467)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~----~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~c~~it~~~ 399 (467)
+|+.|++..++.. .+..++ +.++..+...++ |+.|++++ .+++.++..+.. +++|+.|++++| .+++.+
T Consensus 398 ~L~~L~L~~~~~~--~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~ 472 (594)
T 2p1m_B 398 NMTRFRLCIIEPK--APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLG 472 (594)
T ss_dssp TCCEEEEEESSTT--CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHH
T ss_pred CcceeEeecccCC--CcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHH
Confidence 7777777611000 024555 567777777777 77777765 677777777775 788888888875 477877
Q ss_pred HHHh-cCCCCCCEEeecCCCCCCccchHhhhc-CCCCCeeccCCCCCCCHHHHHHHHhhccccc
Q 012255 400 LQLA-CQFPHLSILRLRKCLGVTDDGLKPLVG-SHKLDLLAVEDCPQVSERGVQGAARSVSFRQ 461 (467)
Q Consensus 400 ~~~l-~~~~~L~~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~ 461 (467)
+..+ .++++|+.|++++|. +++.++..+.. +++|+.|++++|+ ++++++..+++.++.++
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLN 534 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHHHHCTTEE
T ss_pred HHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHHHhCCCCE
Confidence 7776 368888888888876 57777776665 8888888888887 58888888887777653
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=4.9e-38 Score=317.95 Aligned_cols=432 Identities=20% Similarity=0.253 Sum_probs=281.2
Q ss_pred CCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccceEEeccCCCCchhHHHHHHhhCCCccEEEeecccc-----
Q 012255 2 DTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGW----- 76 (467)
Q Consensus 2 ~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----- 76 (467)
.+||+|++.+||+||++.+++.+++.|||+|+.+..+.+..+.+.... ......+..++++|++|++++...
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 90 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCY---TATPDRLSRRFPNLRSLKLKGKPRAAMFN 90 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGG---GSCHHHHHHHCTTCSEEEEECSCGGGGGT
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecc---ccChHHHHHhCCCCeEEEecCCcchhhcc
Confidence 379999999999999449999999999999999987777777665332 122457788999999999975321
Q ss_pred -cccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhc-CCC-CceeeccCCCCCChhhHHHHHhcCCCCcEE
Q 012255 77 -MSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLAS-CLN-LSTLKLKFTTRITGCGILSVVVGCKNLTVL 153 (467)
Q Consensus 77 -~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~-~~~-L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 153 (467)
.+.........++..+...+++|++|+++++ .+++..+..++. +++ |++|++++|..++..++..+...|++|++|
T Consensus 91 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 169 (592)
T 3ogk_B 91 LIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169 (592)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred cccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence 1112234556677888888999999999988 788887777774 555 999999988777777888888889999999
Q ss_pred eccCCcccCchH---HHHHhcccccccccccccCCC--CChhhHHhhccCcccccccccccccccccccc----------
Q 012255 154 HLIRCLNVNSVE---WLEYLGKLERLEDLLIKNCRA--IGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKV---------- 218 (467)
Q Consensus 154 ~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 218 (467)
++.++ .+.+.+ +......+++|++|++..+.- +....+..+...+++|+.|.+...........
T Consensus 170 ~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L 248 (592)
T 3ogk_B 170 LMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248 (592)
T ss_dssp ECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEE
T ss_pred ECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhh
Confidence 99988 332221 334455677788887765422 23455555666667777776654321000000
Q ss_pred ----------------------------hhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEccc
Q 012255 219 ----------------------------YDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDM 270 (467)
Q Consensus 219 ----------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 270 (467)
........++.....+++|++|+++++. +++..+..++..+++|++|.+.+
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred cccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC
Confidence 0000011122224467789999998887 66666766678888888888873
Q ss_pred CcccchhHHHHHHHhCCCCCeeeecc----------CCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCC
Q 012255 271 CVGVRDSDIINMAQTSSKLRSISLRV----------PSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFP 340 (467)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 340 (467)
.+.+.++..+...+++|++|++.+ |. .+++.++..+...||+|++|.+..
T Consensus 328 --~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~------------~~~~~~~~~l~~~~~~L~~L~l~~------ 387 (592)
T 3ogk_B 328 --VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG------------LVSQRGLIALAQGCQELEYMAVYV------ 387 (592)
T ss_dssp --GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC------------CCCHHHHHHHHHHCTTCSEEEEEE------
T ss_pred --ccCHHHHHHHHHhCCCCCEEEeecCccccccccccC------------ccCHHHHHHHHhhCccCeEEEeec------
Confidence 366777777777888888888884 54 566666666665666666666633
Q ss_pred ccccccHHHHHHHHHhCC-CcEeeccc---cccccH----HHHHHHH-hCCCCCEEeecCCC-CcCHHHHHHhc-CCCCC
Q 012255 341 SISSFTLDGILTLIQKCP-VRELSLDY---VYSFND----VGMEALC-SAHYLEILELARCQ-EISDEGLQLAC-QFPHL 409 (467)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~-L~~L~l~~---~~~~~~----~~~~~l~-~~~~L~~L~l~~c~-~it~~~~~~l~-~~~~L 409 (467)
+.+++.++..+...++ |++|++.+ +..+++ .++..+. .+++|+.|+++.|. .+++.++..+. .+++|
T Consensus 388 --~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 388 --SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp --SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred --CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 5666666666666566 66666652 334443 2343333 46666666665543 25555555554 35666
Q ss_pred CEEeecCCCCCCccchHhhhc-CCCCCeeccCCCCCCCHHHHHHHHhhccccccc
Q 012255 410 SILRLRKCLGVTDDGLKPLVG-SHKLDLLAVEDCPQVSERGVQGAARSVSFRQDL 463 (467)
Q Consensus 410 ~~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~~l 463 (467)
+.|++++|. +++.++..+.. +++|+.|++++|+ +++.++..++..++.++.|
T Consensus 466 ~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 466 RWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp CEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred eEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 666666543 55555555443 6666666666665 5666666665555555544
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=2.6e-28 Score=246.79 Aligned_cols=185 Identities=22% Similarity=0.337 Sum_probs=144.7
Q ss_pred CCCCcceeecc--------ccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeec-----cCCC
Q 012255 233 PCENMVELSLK--------NCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLR-----VPSD 299 (467)
Q Consensus 233 ~~~~L~~L~l~--------~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~ 299 (467)
.+++|+.|++. ++..+++.++..+...+++|++|.+. +..+++..+..+...+++|++|++. +|.
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~- 413 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPD- 413 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC-
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcc-
Confidence 46677777773 33445666666666667777777543 3447777777777678888888888 443
Q ss_pred CCccccccCCCCCC----HHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHH
Q 012255 300 FSLPILMSNPLRLT----DESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVG 374 (467)
Q Consensus 300 ~~~~~~~~~~~~~~----~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~ 374 (467)
.++ +.++..+...|++|+.|++++ .+++.++..+...++ |+.|++++|. +++.+
T Consensus 414 -----------~l~~~~~~~~~~~l~~~~~~L~~L~L~~---------~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~ 472 (594)
T 2p1m_B 414 -----------YLTLEPLDIGFGAIVEHCKDLRRLSLSG---------LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLG 472 (594)
T ss_dssp -----------TTTCCCTHHHHHHHHHHCTTCCEEECCS---------SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHH
T ss_pred -----------cccCCchhhHHHHHHhhCCCccEEeecC---------cccHHHHHHHHHhchhccEeeccCCC-CcHHH
Confidence 666 788888888999999999954 788999999988888 9999999974 78888
Q ss_pred HHHHH-hCCCCCEEeecCCCCcCHHHHHHhc-CCCCCCEEeecCCCCCCccchHhhhc-CCCCCeeccCCC
Q 012255 375 MEALC-SAHYLEILELARCQEISDEGLQLAC-QFPHLSILRLRKCLGVTDDGLKPLVG-SHKLDLLAVEDC 442 (467)
Q Consensus 375 ~~~l~-~~~~L~~L~l~~c~~it~~~~~~l~-~~~~L~~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c 442 (467)
+..+. .+++|+.|++++|.. ++.++..+. ++++|+.|++++|+ ++..++..+.. +|+|+...+...
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHHHhCCCCEEEEecCC
Confidence 88885 699999999999864 888887665 69999999999997 69999999865 898877666544
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.1e-28 Score=245.23 Aligned_cols=367 Identities=19% Similarity=0.278 Sum_probs=258.3
Q ss_pred hHHHHHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCC-CCEEeecCCCCCChHhHHHHh-cCCCCceeeccC
Q 012255 54 EALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPY-LTDLTLNYCTFITDVGLCYLA-SCLNLSTLKLKF 131 (467)
Q Consensus 54 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~ 131 (467)
..+..+...+++|++|+++.. .+++..+..+...++. |++|++++|..+++.++..+. .+++|++|++++
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~--------~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRM--------IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESC--------BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred HHHHHHHhhCCCCCeEEeecc--------EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence 345566677888888888743 3666666666555555 777777776555555555554 677777777776
Q ss_pred CCCCChhh---HHHHHhcCCCCcEEeccCCccc--CchHHHHHhcccccccccccccCCCC-------------------
Q 012255 132 TTRITGCG---ILSVVVGCKNLTVLHLIRCLNV--NSVEWLEYLGKLERLEDLLIKNCRAI------------------- 187 (467)
Q Consensus 132 ~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~------------------- 187 (467)
+ .+++.+ +..+...+++|++|++.++... ....+...+..+++|++|++.+|...
T Consensus 174 ~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 174 S-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp C-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred c-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 5 222222 4444555666666666554211 12234444445556666655543210
Q ss_pred ----------------------------ChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcce
Q 012255 188 ----------------------------GEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVE 239 (467)
Q Consensus 188 ----------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 239 (467)
....+..+...+++|++|.+..+. . . + ..+......+++|+.
T Consensus 253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l--~---~----~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-L--E---T----EDHCTLIQKCPNLEV 322 (592)
T ss_dssp CCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-C--C---H----HHHHHHHTTCTTCCE
T ss_pred cccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-C--C---H----HHHHHHHHhCcCCCE
Confidence 011122233344555555554332 0 0 0 011111357899999
Q ss_pred eeccccCccCchhHHHHHhcCCCCcEEEccc----------CcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCC
Q 012255 240 LSLKNCIISPGRGLACVLGKCRNLEKIHLDM----------CVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNP 309 (467)
Q Consensus 240 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 309 (467)
|++.+ .+.+.++..+...|++|++|++++ |..+++.++..+..++++|++|.+. |.
T Consensus 323 L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~----------- 388 (592)
T 3ogk_B 323 LETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VS----------- 388 (592)
T ss_dssp EEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ES-----------
T ss_pred EeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cC-----------
Confidence 99984 466778888888999999999995 7778888888888899999999994 33
Q ss_pred CCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccH----HHHHHHHHhCC-CcEeeccccc-cccHHHHHHHHh-CC
Q 012255 310 LRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTL----DGILTLIQKCP-VRELSLDYVY-SFNDVGMEALCS-AH 382 (467)
Q Consensus 310 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~l~~~~~-L~~L~l~~~~-~~~~~~~~~l~~-~~ 382 (467)
.+++.++..+...+++|+.|++.+|+. ++.+++ .++..+...++ |+.|+++.|. .+++.++..+.. ++
T Consensus 389 -~l~~~~~~~l~~~~~~L~~L~l~~~~~----~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 389 -DITNESLESIGTYLKNLCDFRLVLLDR----EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp -CCCHHHHHHHHHHCCSCCEEEEEECSC----CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred -CccHHHHHHHHhhCCCCcEEEEeecCC----CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 789999999998899999999985431 245554 57888888999 9999998765 478988888885 99
Q ss_pred CCCEEeecCCCCcCHHHHHHh-cCCCCCCEEeecCCCCCCccchHhhhc-CCCCCeeccCCCCCCCHHHHHHHHhhcccc
Q 012255 383 YLEILELARCQEISDEGLQLA-CQFPHLSILRLRKCLGVTDDGLKPLVG-SHKLDLLAVEDCPQVSERGVQGAARSVSFR 460 (467)
Q Consensus 383 ~L~~L~l~~c~~it~~~~~~l-~~~~~L~~L~l~~c~~it~~~~~~l~~-~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~ 460 (467)
+|+.|++++| .+++.++..+ .++++|+.|++++|. +++.++..+.. +++|+.|++++|. +++.++..+++.++.+
T Consensus 464 ~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 464 NVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp TCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred cceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 9999999986 6898887766 489999999999987 99988888776 9999999999998 9999999999988775
Q ss_pred c
Q 012255 461 Q 461 (467)
Q Consensus 461 ~ 461 (467)
+
T Consensus 541 ~ 541 (592)
T 3ogk_B 541 N 541 (592)
T ss_dssp E
T ss_pred E
Confidence 4
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=4.1e-27 Score=220.59 Aligned_cols=281 Identities=20% Similarity=0.260 Sum_probs=159.1
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccceEEeccCCCCchhHHHHHHhhCCCccEEEeecccccccC
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSLRVGCGLDPVNEALTSLCNRFGNLTKVEISYAGWMSRL 80 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 80 (467)
+++||+|++.+||+||+ ..|+.+++.|||+|+++..... .+++++++..
T Consensus 9 ~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~------------------------~~~~l~l~~~------ 57 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDES------------------------LWQTLDLTGK------ 57 (336)
T ss_dssp SSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCST------------------------TSSEEECTTC------
T ss_pred hhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCch------------------------hheeeccccc------
Confidence 57899999999999997 8999999999999998843221 2556666532
Q ss_pred CCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcc
Q 012255 81 GKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLN 160 (467)
Q Consensus 81 ~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 160 (467)
.+.+..+..+. .++++.|+++++ .++.... .+..+++|++|+++++ .++..++...+..+++|++|++.++ .
T Consensus 58 --~~~~~~~~~~~--~~~l~~L~l~~n-~l~~~~~-~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~ 129 (336)
T 2ast_B 58 --NLHPDVTGRLL--SQGVIAFRCPRS-FMDQPLA-EHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-R 129 (336)
T ss_dssp --BCCHHHHHHHH--HTTCSEEECTTC-EECSCCC-SCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-B
T ss_pred --cCCHHHHHhhh--hccceEEEcCCc-cccccch-hhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-c
Confidence 24444343332 267788877665 3332111 1224566666666654 3444445555556666666666555 2
Q ss_pred cCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCccee
Q 012255 161 VNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVEL 240 (467)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 240 (467)
+++. ....+ ..+++|++|
T Consensus 130 l~~~-~~~~l-------------------------------------------------------------~~~~~L~~L 147 (336)
T 2ast_B 130 LSDP-IVNTL-------------------------------------------------------------AKNSNLVRL 147 (336)
T ss_dssp CCHH-HHHHH-------------------------------------------------------------TTCTTCSEE
T ss_pred cCHH-HHHHH-------------------------------------------------------------hcCCCCCEE
Confidence 3221 11111 134566666
Q ss_pred eccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCC-CCCeeeeccCCCCCccccccCCCCCCHHHHHH
Q 012255 241 SLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSS-KLRSISLRVPSDFSLPILMSNPLRLTDESLKA 319 (467)
Q Consensus 241 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 319 (467)
+++++..+++..+..++..+++|++|++++|..+++.++......++ +|++|++++|. ..+++..+..
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~-----------~~~~~~~l~~ 216 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-----------KNLQKSDLST 216 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG-----------GGSCHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc-----------ccCCHHHHHH
Confidence 66665445555566666777777777777774466665666566677 77777777652 0255556665
Q ss_pred HHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHH
Q 012255 320 LADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDE 398 (467)
Q Consensus 320 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~ 398 (467)
....+|+|+.|++++| ..+++..+..+.. ++ |++|++++|..+++.++..+.++++|+.|++++| +++.
T Consensus 217 ~~~~~~~L~~L~l~~~-------~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~ 286 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDS-------VMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDG 286 (336)
T ss_dssp HHHHCTTCSEEECTTC-------TTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTT
T ss_pred HHhhCCCCCEEeCCCC-------CcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHH
Confidence 5556777777777662 1133333332221 23 4444444444444444333444444444444443 4444
Q ss_pred HHHHh
Q 012255 399 GLQLA 403 (467)
Q Consensus 399 ~~~~l 403 (467)
++..+
T Consensus 287 ~~~~l 291 (336)
T 2ast_B 287 TLQLL 291 (336)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 44433
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=8.5e-25 Score=214.03 Aligned_cols=362 Identities=19% Similarity=0.223 Sum_probs=261.8
Q ss_pred hhHHHHHHhhCCCccEEEeecccccccCCCCCCHHHH---HHHHhhCCCCCEEeecCCCCCChHhHHHHh-cCC----CC
Q 012255 53 NEALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGL---LILSNSCPYLTDLTLNYCTFITDVGLCYLA-SCL----NL 124 (467)
Q Consensus 53 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~----~L 124 (467)
...+..+...+++|++|+++.++ +++... ......+++|++|+++++ .+++.++..+. .++ +|
T Consensus 17 ~~~~~~~~~~~~~L~~L~L~~~~--------l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L 87 (461)
T 1z7x_W 17 DARWAELLPLLQQCQVVRLDDCG--------LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKI 87 (461)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSC--------CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCC
T ss_pred chhHHHHHhhcCCccEEEccCCC--------CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCce
Confidence 34466778899999999998543 665543 333456899999999987 68887776665 455 79
Q ss_pred ceeeccCCCCCChhh---HHHHHhcCCCCcEEeccCCcccCchHHHH---Hh-cccccccccccccCCCCChhhHHh---
Q 012255 125 STLKLKFTTRITGCG---ILSVVVGCKNLTVLHLIRCLNVNSVEWLE---YL-GKLERLEDLLIKNCRAIGEGDLIK--- 194 (467)
Q Consensus 125 ~~L~l~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~-~~~~~L~~L~l~~~~~~~~~~~~~--- 194 (467)
++|+++++ .+++.+ +...+..+++|++|+++++ .+++..... .+ ...++|++|++.+| .+++.+...
T Consensus 88 ~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~ 164 (461)
T 1z7x_W 88 QKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLAS 164 (461)
T ss_dssp CEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHH
T ss_pred eEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHH
Confidence 99999987 566543 4555678899999999998 465432222 21 22468999999887 566655433
Q ss_pred hccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchh---HHHHHhcCCCCcEEEcccC
Q 012255 195 LGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRG---LACVLGKCRNLEKIHLDMC 271 (467)
Q Consensus 195 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~ 271 (467)
....+++|+.|.+.... .. ......+... .....++|++|+++++. +++.+ +...+..+++|++|+++++
T Consensus 165 ~l~~~~~L~~L~L~~n~---i~-~~~~~~l~~~--l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNND---IN-EAGVRVLCQG--LKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHCTTCCEEECCSSB---CH-HHHHHHHHHH--HHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHhhCCCCCEEECcCCC---cc-hHHHHHHHHH--HhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 34456888988887543 11 0011111110 02245699999999986 55543 4555678999999999998
Q ss_pred cccchhHHHHHHH----hCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHH---hcCCCCCeEEecccCCCCCcccc
Q 012255 272 VGVRDSDIINMAQ----TSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALA---DNCRMLESVRISFSDGEFPSISS 344 (467)
Q Consensus 272 ~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~ 344 (467)
. +++.++..+.. .+++|++|++++| .+++.+...+. ..+++|++|++++ +.
T Consensus 238 ~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-------------~l~~~~~~~l~~~l~~~~~L~~L~Ls~--------n~ 295 (461)
T 1z7x_W 238 K-LGDVGMAELCPGLLHPSSRLRTLWIWEC-------------GITAKGCGDLCRVLRAKESLKELSLAG--------NE 295 (461)
T ss_dssp B-CHHHHHHHHHHHHTSTTCCCCEEECTTS-------------CCCHHHHHHHHHHHHHCTTCCEEECTT--------CC
T ss_pred c-CChHHHHHHHHHHhcCCCCceEEECcCC-------------CCCHHHHHHHHHHHhhCCCcceEECCC--------CC
Confidence 5 77777655543 4789999999987 47887654444 3589999999998 67
Q ss_pred ccHHHHHHHHHh----CC-CcEeeccccccccHHHHHH----HHhCCCCCEEeecCCCCcCHHHHHHhcC-----CCCCC
Q 012255 345 FTLDGILTLIQK----CP-VRELSLDYVYSFNDVGMEA----LCSAHYLEILELARCQEISDEGLQLACQ-----FPHLS 410 (467)
Q Consensus 345 ~~~~~~~~l~~~----~~-L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~c~~it~~~~~~l~~-----~~~L~ 410 (467)
+++.+...+... .+ |+.|++++|. +++.+... +..+++|+.|+++++ .+++.+...+.. .++|+
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCC
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceE
Confidence 888877777654 23 9999999974 66655433 346899999999996 788888776653 78999
Q ss_pred EEeecCCCCCCccchHhhh----cCCCCCeeccCCCCCCCHHHHHHHHhhccc
Q 012255 411 ILRLRKCLGVTDDGLKPLV----GSHKLDLLAVEDCPQVSERGVQGAARSVSF 459 (467)
Q Consensus 411 ~L~l~~c~~it~~~~~~l~----~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~ 459 (467)
.|++++| .+++.++..+. .+++|+.|++++|+ +++.++..+.+.++.
T Consensus 374 ~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 374 VLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQ 424 (461)
T ss_dssp EEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS
T ss_pred EEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc
Confidence 9999996 59987666655 38999999999996 999999999987654
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.4e-23 Score=205.31 Aligned_cols=363 Identities=21% Similarity=0.239 Sum_probs=265.5
Q ss_pred HHHHHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCC----CCCEEeecCCCCCChHhHH----HHhcCCCCce
Q 012255 55 ALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCP----YLTDLTLNYCTFITDVGLC----YLASCLNLST 126 (467)
Q Consensus 55 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~----~L~~L~l~~~~~~~~~~l~----~l~~~~~L~~ 126 (467)
.+...+..+++|++|++++. .+++.....+...++ +|++|++++| .+++.+.. .+..+++|++
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n--------~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~ 117 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSN--------ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQE 117 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTC--------CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCE
T ss_pred HHHHHHHhCCCcCEEeCCCC--------cCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeE
Confidence 56677788899999999843 477777777777777 7999999998 68876533 3457899999
Q ss_pred eeccCCCCCChhhHHHHHhc----CCCCcEEeccCCcccCch---HHHHHhcccccccccccccCCCCChhhHHhhccC-
Q 012255 127 LKLKFTTRITGCGILSVVVG----CKNLTVLHLIRCLNVNSV---EWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPC- 198 (467)
Q Consensus 127 L~l~~~~~~~~~~l~~~~~~----~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~- 198 (467)
|+++++ .+++.+...+... .++|++|++.++ .++.. .+...+..+++|++|+++++. +++.+...+..+
T Consensus 118 L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l 194 (461)
T 1z7x_W 118 LHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGL 194 (461)
T ss_dssp EECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHH
T ss_pred EECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHH
Confidence 999987 5776666655543 457999999998 56543 245667778999999999874 777666665543
Q ss_pred ---cccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHH----hcCCCCcEEEcccC
Q 012255 199 ---WRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVL----GKCRNLEKIHLDMC 271 (467)
Q Consensus 199 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~----~~~~~L~~L~l~~~ 271 (467)
.++|+.|.+....- . ......++.....+++|++|+++++. +.+.++..+. ..+++|++|+++++
T Consensus 195 ~~~~~~L~~L~L~~n~l---~----~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 195 KDSPCQLEALKLESCGV---T----SDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHSCCCCCEEECTTSCC---B----TTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred hcCCCCceEEEccCCCC---c----HHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 34899998876531 1 01111122123467899999999985 5555554433 35889999999998
Q ss_pred cccchhHHHH---HHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhc----CCCCCeEEecccCCCCCcccc
Q 012255 272 VGVRDSDIIN---MAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADN----CRMLESVRISFSDGEFPSISS 344 (467)
Q Consensus 272 ~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~~~ 344 (467)
. +++.+... ....+++|++|+++++ .+++.+...+... .++|++|++++ +.
T Consensus 267 ~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-------------~i~~~~~~~l~~~l~~~~~~L~~L~L~~--------n~ 324 (461)
T 1z7x_W 267 G-ITAKGCGDLCRVLRAKESLKELSLAGN-------------ELGDEGARLLCETLLEPGCQLESLWVKS--------CS 324 (461)
T ss_dssp C-CCHHHHHHHHHHHHHCTTCCEEECTTC-------------CCHHHHHHHHHHHHTSTTCCCCEEECTT--------SC
T ss_pred C-CCHHHHHHHHHHHhhCCCcceEECCCC-------------CCchHHHHHHHHHhccCCccceeeEcCC--------CC
Confidence 5 77766443 3446899999999986 4777777666644 36999999998 46
Q ss_pred ccHHHHH---HHHHhCC-CcEeeccccccccHHHHHHHHh-----CCCCCEEeecCCCCcCHHHHHH----hcCCCCCCE
Q 012255 345 FTLDGIL---TLIQKCP-VRELSLDYVYSFNDVGMEALCS-----AHYLEILELARCQEISDEGLQL----ACQFPHLSI 411 (467)
Q Consensus 345 ~~~~~~~---~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~c~~it~~~~~~----l~~~~~L~~ 411 (467)
+++.+.. .....++ |+.|+++++ .+++.+...+.. .++|+.|++++| .+++.++.. +.++++|+.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccE
Confidence 6666543 4445567 999999997 688887776663 679999999996 788865554 446899999
Q ss_pred EeecCCCCCCccchHhhhc-----CCCCCeeccCCCCCCC---HHHHHHHHhhccccccc
Q 012255 412 LRLRKCLGVTDDGLKPLVG-----SHKLDLLAVEDCPQVS---ERGVQGAARSVSFRQDL 463 (467)
Q Consensus 412 L~l~~c~~it~~~~~~l~~-----~~~L~~L~l~~c~~~~---~~~~~~l~~~~~~~~~l 463 (467)
|++++| .+++.++..+.. ..+|+.|.+.++. .. .+.++.+.+..++++.+
T Consensus 403 L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~-~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 403 LDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY-WSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp EECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC-CCHHHHHHHHHHHHHCTTSEEE
T ss_pred EECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc-cCHHHHHHHHHHhccCCCcEee
Confidence 999995 599998888875 3469999888875 44 45677777777777654
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.4e-19 Score=167.70 Aligned_cols=279 Identities=19% Similarity=0.218 Sum_probs=150.7
Q ss_pred CCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHh-cCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcc
Q 012255 82 KQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLA-SCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLN 160 (467)
Q Consensus 82 ~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 160 (467)
..+.++.+..|....+ .-++..+..+ -..+..+. .-..++.++++++ .+....+..+. .++++.|++.++ .
T Consensus 10 ~~LP~eil~~If~~L~---~~d~~~~~~v-c~~W~~~~~~~~~~~~l~l~~~-~~~~~~~~~~~--~~~l~~L~l~~n-~ 81 (336)
T 2ast_B 10 DSLPDELLLGIFSCLC---LPELLKVSGV-CKRWYRLASDESLWQTLDLTGK-NLHPDVTGRLL--SQGVIAFRCPRS-F 81 (336)
T ss_dssp SSSCHHHHHHHHTTSC---HHHHHHTTSS-CHHHHHHHTCSTTSSEEECTTC-BCCHHHHHHHH--HTTCSEEECTTC-E
T ss_pred hhCCHHHHHHHHHhCC---HHHHHHHHHH-HHHHHHHhcCchhheeeccccc-cCCHHHHHhhh--hccceEEEcCCc-c
Confidence 4577777776654433 2233233222 12233333 2234777887764 34433322221 157777777765 3
Q ss_pred cCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCccee
Q 012255 161 VNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVEL 240 (467)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 240 (467)
+... ...+..+++|++|+++++. ++...+... ...+++|++|
T Consensus 82 l~~~--~~~~~~~~~L~~L~L~~~~-l~~~~~~~~-----------------------------------~~~~~~L~~L 123 (336)
T 2ast_B 82 MDQP--LAEHFSPFRVQHMDLSNSV-IEVSTLHGI-----------------------------------LSQCSKLQNL 123 (336)
T ss_dssp ECSC--CCSCCCCBCCCEEECTTCE-ECHHHHHHH-----------------------------------HTTBCCCSEE
T ss_pred cccc--chhhccCCCCCEEEccCCC-cCHHHHHHH-----------------------------------HhhCCCCCEE
Confidence 3221 0113345566666665542 332212111 2345667777
Q ss_pred eccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHH
Q 012255 241 SLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKAL 320 (467)
Q Consensus 241 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 320 (467)
+++++. +.+..... +..+++|++|++++|..+++..+..+...+++|++|++++|. .+++.++...
T Consensus 124 ~L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------------~l~~~~~~~~ 189 (336)
T 2ast_B 124 SLEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF------------DFTEKHVQVA 189 (336)
T ss_dssp ECTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT------------TCCHHHHHHH
T ss_pred eCcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC------------CcChHHHHHH
Confidence 776664 33333333 355666777777666445555555555566677777766653 4565555555
Q ss_pred HhcCC-CCCeEEecccCCCCCccc-cccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCH
Q 012255 321 ADNCR-MLESVRISFSDGEFPSIS-SFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISD 397 (467)
Q Consensus 321 ~~~~~-~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~ 397 (467)
...+| +|++|++++| . .+++..+......++ |+.|++++|..+++..+..+.++++|+.|++++|..+++
T Consensus 190 ~~~l~~~L~~L~l~~~-------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 190 VAHVSETITQLNLSGY-------RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHSCTTCCEEECCSC-------GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred HHhcccCCCEEEeCCC-------cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 55666 6777777662 2 455555555555566 666666666545555555555566666666666655666
Q ss_pred HHHHHhcCCCCCCEEeecCCCCCCccchHhhh
Q 012255 398 EGLQLACQFPHLSILRLRKCLGVTDDGLKPLV 429 (467)
Q Consensus 398 ~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~ 429 (467)
.++..+.++++|+.|++++| +++.++..+.
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~ 292 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI--VPDGTLQLLK 292 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS--SCTTCHHHHH
T ss_pred HHHHHHhcCCCCCEEeccCc--cCHHHHHHHH
Confidence 55555556666666666665 5655555554
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=2.6e-19 Score=168.17 Aligned_cols=305 Identities=18% Similarity=0.164 Sum_probs=212.0
Q ss_pred hhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhH
Q 012255 61 NRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGI 140 (467)
Q Consensus 61 ~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l 140 (467)
..+++|++|+++..+. ..+. .+ ..+++|++|+++++ .+++... +..+++|++|+++++ .++...
T Consensus 41 ~~l~~L~~L~l~~~~i-----~~~~-----~~-~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~- 104 (347)
T 4fmz_A 41 EELESITKLVVAGEKV-----ASIQ-----GI-EYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTN-KITDIS- 104 (347)
T ss_dssp HHHTTCSEEECCSSCC-----CCCT-----TG-GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG-
T ss_pred hhcccccEEEEeCCcc-----ccch-----hh-hhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCC-cccCch-
Confidence 4678899999986543 1122 12 56899999999988 5665333 678899999999987 454422
Q ss_pred HHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchh
Q 012255 141 LSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYD 220 (467)
Q Consensus 141 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 220 (467)
.+..+++|++|++.++ .+..... +..+++|+.|++.++........ ...+++|+.|.+....-.....
T Consensus 105 --~~~~l~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--- 172 (347)
T 4fmz_A 105 --ALQNLTNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP--- 172 (347)
T ss_dssp --GGTTCTTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG---
T ss_pred --HHcCCCcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh---
Confidence 2558899999999988 4544322 77889999999988865554322 4566788888776543111110
Q ss_pred hhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCC
Q 012255 221 RLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDF 300 (467)
Q Consensus 221 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (467)
...+++|+.|+++++....... +..+++|+.|.++++. +..... ...+++|++|++++|.
T Consensus 173 ----------~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~-- 232 (347)
T 4fmz_A 173 ----------IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNK-- 232 (347)
T ss_dssp ----------GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC--
T ss_pred ----------hccCCCCCEEEccCCccccccc----ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCc--
Confidence 2467899999999876332222 5778999999999875 433222 4578999999999875
Q ss_pred CccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHH
Q 012255 301 SLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALC 379 (467)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~ 379 (467)
++.... ...+++|++|+++++ .+++. .....++ |+.|+++++ .+++. ..+.
T Consensus 233 -----------l~~~~~---~~~l~~L~~L~l~~n--------~l~~~---~~~~~l~~L~~L~l~~n-~l~~~--~~~~ 284 (347)
T 4fmz_A 233 -----------ITDLSP---LANLSQLTWLEIGTN--------QISDI---NAVKDLTKLKMLNVGSN-QISDI--SVLN 284 (347)
T ss_dssp -----------CCCCGG---GTTCTTCCEEECCSS--------CCCCC---GGGTTCTTCCEEECCSS-CCCCC--GGGG
T ss_pred -----------cCCCcc---hhcCCCCCEEECCCC--------ccCCC---hhHhcCCCcCEEEccCC-ccCCC--hhhc
Confidence 222111 337899999999883 44332 1133456 999999997 44432 3455
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
.+++|+.|++++| .+++.....+.++++|+.|++++|. +++... +..+++|+.|++++|+ ++
T Consensus 285 ~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~N~-i~ 346 (347)
T 4fmz_A 285 NLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFANQV-IK 346 (347)
T ss_dssp GCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSSCC----
T ss_pred CCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccC--hhhhhccceeehhhhc-cc
Confidence 7899999999996 6777777888899999999999965 776433 6669999999999997 44
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.2e-18 Score=163.57 Aligned_cols=297 Identities=16% Similarity=0.160 Sum_probs=213.0
Q ss_pred hCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccc
Q 012255 95 SCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLE 174 (467)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 174 (467)
.+++|++|+++++ .+.+ +..+..+++|++|+++++ .+++.. . +..+++|++|++.++ .+... ..+..++
T Consensus 42 ~l~~L~~L~l~~~-~i~~--~~~~~~~~~L~~L~l~~n-~i~~~~--~-~~~l~~L~~L~L~~n-~i~~~---~~~~~l~ 110 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVAS--IQGIEYLTNLEYLNLNGN-QITDIS--P-LSNLVKLTNLYIGTN-KITDI---SALQNLT 110 (347)
T ss_dssp HHTTCSEEECCSS-CCCC--CTTGGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCC---GGGTTCT
T ss_pred hcccccEEEEeCC-cccc--chhhhhcCCccEEEccCC-ccccch--h-hhcCCcCCEEEccCC-cccCc---hHHcCCC
Confidence 5699999999987 5554 344778999999999987 555433 2 568999999999998 56543 3578899
Q ss_pred cccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHH
Q 012255 175 RLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLA 254 (467)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 254 (467)
+|++|+++++. +..... ...+++|+.|.+.........+. ...+++|+.|+++++.......
T Consensus 111 ~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~------------~~~l~~L~~L~l~~~~~~~~~~-- 172 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSP------------LSNMTGLNYLTVTESKVKDVTP-- 172 (347)
T ss_dssp TCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGG------------GTTCTTCCEEECCSSCCCCCGG--
T ss_pred cCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccc------------hhhCCCCcEEEecCCCcCCchh--
Confidence 99999998873 333221 45678888888875532221111 3577899999999886333222
Q ss_pred HHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 012255 255 CVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISF 334 (467)
Q Consensus 255 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 334 (467)
+..+++|++|+++++. +..... ...+++|+.|++.++. +++... ...+++|++|++++
T Consensus 173 --~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-------------l~~~~~---~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQ-------------ITDITP---VANMTRLNSLKIGN 230 (347)
T ss_dssp --GGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSC-------------CCCCGG---GGGCTTCCEEECCS
T ss_pred --hccCCCCCEEEccCCc-cccccc---ccCCCccceeecccCC-------------CCCCch---hhcCCcCCEEEccC
Confidence 5789999999999886 433222 4578999999999865 222111 33789999999998
Q ss_pred cCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEe
Q 012255 335 SDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILR 413 (467)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 413 (467)
| .+++... ...++ |+.|+++++. +++. ..+..+++|+.|++++| .+++. ..+..+++|+.|+
T Consensus 231 n--------~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 231 N--------KITDLSP---LANLSQLTWLEIGTNQ-ISDI--NAVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLF 293 (347)
T ss_dssp S--------CCCCCGG---GTTCTTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEE
T ss_pred C--------ccCCCcc---hhcCCCCCEEECCCCc-cCCC--hhHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEE
Confidence 4 4433222 44566 9999999973 4432 34557999999999996 55553 4567899999999
Q ss_pred ecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHHhhcccccccc
Q 012255 414 LRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSFRQDLS 464 (467)
Q Consensus 414 l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~~~l~ 464 (467)
+++| .+++.....+..+++|+.|++++|+ ++...- ...++.++.|.
T Consensus 294 L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~ 339 (347)
T 4fmz_A 294 LNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSAD 339 (347)
T ss_dssp CCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEES
T ss_pred CcCC-cCCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhccceee
Confidence 9996 4898888888889999999999997 554321 44555555554
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=3.4e-17 Score=155.95 Aligned_cols=201 Identities=24% Similarity=0.274 Sum_probs=128.1
Q ss_pred cCCCCcceeeccccCccCch---hHHHHHhcCCCCcEEEcccCcccchhHHHHHH---HhC---------CCCCeeeecc
Q 012255 232 VPCENMVELSLKNCIISPGR---GLACVLGKCRNLEKIHLDMCVGVRDSDIINMA---QTS---------SKLRSISLRV 296 (467)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~---------~~L~~L~l~~ 296 (467)
..+++|++|+++++. +... .+...+..+++|++|+++++. ++..+...+. ..+ ++|++|++++
T Consensus 91 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred hhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 355677777777665 3332 233445677888888888775 5544433332 223 7888888887
Q ss_pred CCCCCccccccCCCCCCHHHHHHH---HhcCCCCCeEEecccCCCCCccccccHHHHHHHHH----hCC-CcEeeccccc
Q 012255 297 PSDFSLPILMSNPLRLTDESLKAL---ADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQ----KCP-VRELSLDYVY 368 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~----~~~-L~~L~l~~~~ 368 (467)
|. +++.++..+ ...+++|++|++++ +.+++.++..+.. .++ |+.|+++++
T Consensus 169 n~-------------l~~~~~~~l~~~l~~~~~L~~L~L~~--------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n- 226 (386)
T 2ca6_A 169 NR-------------LENGSMKEWAKTFQSHRLLHTVKMVQ--------NGIRPEGIEHLLLEGLAYCQELKVLDLQDN- 226 (386)
T ss_dssp SC-------------CTGGGHHHHHHHHHHCTTCCEEECCS--------SCCCHHHHHHHHHTTGGGCTTCCEEECCSS-
T ss_pred CC-------------CCcHHHHHHHHHHHhCCCcCEEECcC--------CCCCHhHHHHHHHHHhhcCCCccEEECcCC-
Confidence 53 554444432 23677888888877 5677776555444 455 888888876
Q ss_pred cccHHHHHHH----HhCCCCCEEeecCCCCcCHHHHHHhc------CCCCCCEEeecCCCCCCccchHhhh----c-CCC
Q 012255 369 SFNDVGMEAL----CSAHYLEILELARCQEISDEGLQLAC------QFPHLSILRLRKCLGVTDDGLKPLV----G-SHK 433 (467)
Q Consensus 369 ~~~~~~~~~l----~~~~~L~~L~l~~c~~it~~~~~~l~------~~~~L~~L~l~~c~~it~~~~~~l~----~-~~~ 433 (467)
.+++.+...+ ..+++|+.|++++| .+++.+...++ ++++|+.|++++| .+++.++..+. . +++
T Consensus 227 ~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 227 TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCC
Confidence 4665444333 35788888888885 57776554433 2788888888885 48875444443 2 688
Q ss_pred CCeeccCCCCCCCHHH--HHHHHhhccc
Q 012255 434 LDLLAVEDCPQVSERG--VQGAARSVSF 459 (467)
Q Consensus 434 L~~L~l~~c~~~~~~~--~~~l~~~~~~ 459 (467)
|+.|++++|+ ++... +..+.+.++.
T Consensus 305 L~~L~l~~N~-l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 305 LLFLELNGNR-FSEEDDVVDEIREVFST 331 (386)
T ss_dssp CCEEECTTSB-SCTTSHHHHHHHHHHHH
T ss_pred ceEEEccCCc-CCcchhHHHHHHHHhhh
Confidence 8888888886 66544 5666555444
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=6.6e-17 Score=157.93 Aligned_cols=300 Identities=19% Similarity=0.208 Sum_probs=139.6
Q ss_pred HhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhh
Q 012255 60 CNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCG 139 (467)
Q Consensus 60 ~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 139 (467)
...+++|++|+++.... ..+.. ...+++|++|+++++ .+++... +..+++|++|+++++ .++...
T Consensus 64 ~~~l~~L~~L~Ls~n~l-----~~~~~------~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~ 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQL-----TDITP------LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN-QITDID 128 (466)
T ss_dssp GGGCTTCCEEECCSSCC-----CCCGG------GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred hhhhcCCCEEECCCCcc-----CCchh------hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCC-CCCCCh
Confidence 35567777777765432 11111 245677777777766 4444222 556777777777765 333322
Q ss_pred HHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccch
Q 012255 140 ILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVY 219 (467)
Q Consensus 140 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 219 (467)
. +..+++|++|++.++ .+.... .+..+++|+.|.+.+. +... .. ...+++|+.|.+....-...
T Consensus 129 --~-~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~~--~~~~--~~-~~~l~~L~~L~l~~n~l~~~---- 192 (466)
T 1o6v_A 129 --P-LKNLTNLNRLELSSN-TISDIS---ALSGLTSLQQLSFGNQ--VTDL--KP-LANLTTLERLDISSNKVSDI---- 192 (466)
T ss_dssp --G-GTTCTTCSEEEEEEE-EECCCG---GGTTCTTCSEEEEEES--CCCC--GG-GTTCTTCCEEECCSSCCCCC----
T ss_pred --H-HcCCCCCCEEECCCC-ccCCCh---hhccCCcccEeecCCc--ccCc--hh-hccCCCCCEEECcCCcCCCC----
Confidence 1 446777777777766 343321 3555666666665431 1111 01 23445555555543320000
Q ss_pred hhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCC
Q 012255 220 DRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSD 299 (467)
Q Consensus 220 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 299 (467)
.. ...+++|++|+++++....... +..+++|++|+++++. +.... ....+++|++|++++|.
T Consensus 193 -----~~----l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~- 254 (466)
T 1o6v_A 193 -----SV----LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LKDIG---TLASLTNLTDLDLANNQ- 254 (466)
T ss_dssp -----GG----GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSC-
T ss_pred -----hh----hccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cccch---hhhcCCCCCEEECCCCc-
Confidence 00 2244566666666554211111 3445566666665553 22211 12345566666665543
Q ss_pred CCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHH
Q 012255 300 FSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEAL 378 (467)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l 378 (467)
++... . ...+++|+.|+++++ .+++... ...++ |+.|+++++. +++. ..+
T Consensus 255 ------------l~~~~--~-~~~l~~L~~L~l~~n--------~l~~~~~---~~~l~~L~~L~L~~n~-l~~~--~~~ 305 (466)
T 1o6v_A 255 ------------ISNLA--P-LSGLTKLTELKLGAN--------QISNISP---LAGLTALTNLELNENQ-LEDI--SPI 305 (466)
T ss_dssp ------------CCCCG--G-GTTCTTCSEEECCSS--------CCCCCGG---GTTCTTCSEEECCSSC-CSCC--GGG
T ss_pred ------------cccch--h-hhcCCCCCEEECCCC--------ccCcccc---ccCCCccCeEEcCCCc-ccCc--hhh
Confidence 11100 0 124555555555552 2221110 22233 5555555542 2211 113
Q ss_pred HhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 379 CSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 379 ~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
..+++|+.|++++| .+++.. .+..+++|+.|++++| .+++. ..+..+++|+.|++++|.
T Consensus 306 ~~l~~L~~L~L~~n-~l~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 306 SNLKNLTYLTLYFN-NISDIS--PVSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GGCTTCSEEECCSS-CCSCCG--GGGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECcCC-cCCCch--hhccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCCc
Confidence 34555555555554 233221 1334555555555553 24432 334445555555555554
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1e-16 Score=156.50 Aligned_cols=301 Identities=19% Similarity=0.198 Sum_probs=209.1
Q ss_pred hCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHH
Q 012255 62 RFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGIL 141 (467)
Q Consensus 62 ~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~ 141 (467)
.++++++|++...+. ..+. .+ ..+++|++|+++++ .+++... +..+++|++|+++++ .++...
T Consensus 44 ~l~~l~~L~l~~~~i-----~~l~-----~~-~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~-- 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI-----KSID-----GV-EYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNN-QIADIT-- 106 (466)
T ss_dssp HHHTCCEEECCSSCC-----CCCT-----TG-GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG--
T ss_pred HhccccEEecCCCCC-----ccCc-----ch-hhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCC-ccccCh--
Confidence 456899999975543 1222 12 56899999999998 5665432 778999999999987 444322
Q ss_pred HHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhh
Q 012255 142 SVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDR 221 (467)
Q Consensus 142 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 221 (467)
. +..+++|++|++.++ .+.... .+..+++|++|+++++. +.... -...+++|+.|.+... ....
T Consensus 107 ~-~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~~--~~~~----- 170 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNN-QITDID---PLKNLTNLNRLELSSNT-ISDIS---ALSGLTSLQQLSFGNQ--VTDL----- 170 (466)
T ss_dssp G-GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCSEEEEEEEE-ECCCG---GGTTCTTCSEEEEEES--CCCC-----
T ss_pred h-hcCCCCCCEEECCCC-CCCCCh---HHcCCCCCCEEECCCCc-cCCCh---hhccCCcccEeecCCc--ccCc-----
Confidence 2 568999999999998 555432 27889999999998873 33321 1456778888877421 1100
Q ss_pred hhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCC
Q 012255 222 LAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFS 301 (467)
Q Consensus 222 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (467)
.. ...+++|+.|+++++. +... . .+..+++|++|+++++. +..... ...+++|++|+++++.
T Consensus 171 ---~~----~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~--- 232 (466)
T 1o6v_A 171 ---KP----LANLTTLERLDISSNK-VSDI--S-VLAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQ--- 232 (466)
T ss_dssp ---GG----GTTCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC---
T ss_pred ---hh----hccCCCCCEEECcCCc-CCCC--h-hhccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCC---
Confidence 00 3577899999999886 3332 1 25789999999999886 433221 3468999999999875
Q ss_pred ccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHh
Q 012255 302 LPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCS 380 (467)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~ 380 (467)
+++. ..+ ..+++|+.|++++| .+++... ...++ |+.|+++++. ++... .+..
T Consensus 233 ----------l~~~--~~l-~~l~~L~~L~l~~n--------~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~--~~~~ 285 (466)
T 1o6v_A 233 ----------LKDI--GTL-ASLTNLTDLDLANN--------QISNLAP---LSGLTKLTELKLGANQ-ISNIS--PLAG 285 (466)
T ss_dssp ----------CCCC--GGG-GGCTTCSEEECCSS--------CCCCCGG---GTTCTTCSEEECCSSC-CCCCG--GGTT
T ss_pred ----------cccc--hhh-hcCCCCCEEECCCC--------ccccchh---hhcCCCCCEEECCCCc-cCccc--cccC
Confidence 2221 122 36899999999984 3332211 34566 9999999974 33322 2567
Q ss_pred CCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCH
Q 012255 381 AHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 381 ~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~ 447 (467)
+++|+.|++++| .+++. ..+..+++|+.|++++|. +++... +..+++|+.|++++|. ++.
T Consensus 286 l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~-l~~ 345 (466)
T 1o6v_A 286 LTALTNLELNEN-QLEDI--SPISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNK-VSD 345 (466)
T ss_dssp CTTCSEEECCSS-CCSCC--GGGGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSSC-CCC
T ss_pred CCccCeEEcCCC-cccCc--hhhcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCCc-cCC
Confidence 999999999996 44442 236789999999999964 776443 5569999999999996 554
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=3.2e-18 Score=166.93 Aligned_cols=335 Identities=15% Similarity=0.116 Sum_probs=173.3
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
++|++|++++..... +... .+ ..+++|++|+++++.-........+..+++|++|+++++ .++... ...
T Consensus 30 ~~l~~L~Ls~n~i~~-----~~~~---~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-----LNET---SF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLE-TGA 98 (455)
T ss_dssp TTCCEEECCSSCCCE-----ECTT---TT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEEC-TTT
T ss_pred CccCEEEecCCccCc-----CChh---Hh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccC-hhh
Confidence 467777776543211 1111 11 356777777776662211222233456677777777765 333221 122
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHH--hcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhh
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEY--LGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDR 221 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 221 (467)
+..+++|++|++.++ .+... .... +..+++|++|+++++ .++......++..+++|+.|.+....-.... +
T Consensus 99 ~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~ 171 (455)
T 3v47_A 99 FNGLANLEVLTLTQC-NLDGA-VLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSIC----E 171 (455)
T ss_dssp TTTCTTCCEEECTTS-CCBTH-HHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCC----T
T ss_pred ccCcccCCEEeCCCC-CCCcc-ccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccC----h
Confidence 345677777777766 44332 2222 556677777777665 2322221222344566666665443211000 0
Q ss_pred hhhhhhh---------------------------hcccCCCCcceeeccccCccCchhHHHHHh--cCCCCcEEEcccCc
Q 012255 222 LAVDRWQ---------------------------RQRVPCENMVELSLKNCIISPGRGLACVLG--KCRNLEKIHLDMCV 272 (467)
Q Consensus 222 ~~~~~~~---------------------------~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~ 272 (467)
.....+. ......++|+.|+++++. +.......+.. ..++|+.|.++++.
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeecccc
Confidence 0000000 001123456666665543 22222222111 12455566555442
Q ss_pred ccch---------hHHHHH-HHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCcc
Q 012255 273 GVRD---------SDIINM-AQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSI 342 (467)
Q Consensus 273 ~~~~---------~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 342 (467)
.... .....+ ....++|++|+++++. ++...-.. ...+++|+.|++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~-~~~l~~L~~L~Ls~-------- 308 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-------------IFALLKSV-FSHFTDLEQLTLAQ-------- 308 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-------------CCEECTTT-TTTCTTCCEEECTT--------
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCcc-------------ccccchhh-cccCCCCCEEECCC--------
Confidence 1100 000000 0012567777777653 22111111 22578899999987
Q ss_pred ccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCC
Q 012255 343 SSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVT 421 (467)
Q Consensus 343 ~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it 421 (467)
+.+++..... +..++ |+.|+++++ .++......+..+++|+.|+++++ .+++.....+.++++|+.|+++++ .++
T Consensus 309 n~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 309 NEINKIDDNA-FWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp SCCCEECTTT-TTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred CcccccChhH-hcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccc
Confidence 3333321111 22345 999999986 444433344557899999999985 666655566778899999999994 588
Q ss_pred ccchHhhhcCCCCCeeccCCCC
Q 012255 422 DDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 422 ~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
......+..+++|+.|++++++
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCHhHhccCCcccEEEccCCC
Confidence 7666556668999999999887
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=3.9e-16 Score=148.64 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=61.7
Q ss_pred CCHHHHHHH---HhhCCCCCEEeecCCCCCChHhHHHHh----cCCCCceeeccCC--CCCCh---hhH---HHHHhcCC
Q 012255 84 LDDQGLLIL---SNSCPYLTDLTLNYCTFITDVGLCYLA----SCLNLSTLKLKFT--TRITG---CGI---LSVVVGCK 148 (467)
Q Consensus 84 i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~l~~l~----~~~~L~~L~l~~~--~~~~~---~~l---~~~~~~~~ 148 (467)
+++..+..+ ...+++|++|+++++ .+++.+...++ .+++|++|+++++ ..++. .++ ...+..++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 444444333 245788999999887 77777665543 6788889988875 22221 122 22235678
Q ss_pred CCcEEeccCCcccCch---HHHHHhcccccccccccccC
Q 012255 149 NLTVLHLIRCLNVNSV---EWLEYLGKLERLEDLLIKNC 184 (467)
Q Consensus 149 ~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~ 184 (467)
+|++|+++++ .++.. .+...+..+++|++|+++++
T Consensus 95 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 95 KLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred cccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 8888888877 44432 24455666677777777665
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=1.5e-18 Score=175.55 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=31.5
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
.+++|+.|++++| .++......+.++++|+.|+++++ .++......+..+++| .|++++|.
T Consensus 474 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 474 TLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp GCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred cCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCc
Confidence 4555555555553 333333334445555666666553 3555555555555555 56665553
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=2.8e-18 Score=168.36 Aligned_cols=303 Identities=17% Similarity=0.149 Sum_probs=186.3
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
++++.|+++..... .+... .+ ..+++|++|+++++ .++......+..+++|++|+++++ .++... ...
T Consensus 32 ~~l~~L~L~~n~l~-----~~~~~---~~-~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIK-----TLNQD---EF-ASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIP-LGV 99 (477)
T ss_dssp TTCSEEECCSSCCC-----EECTT---TT-TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCC-TTS
T ss_pred CCCcEEECCCCccc-----eECHh---Hc-cCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccC-ccc
Confidence 46788888754321 11111 11 45788888888776 566544455667788888888765 343222 122
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhh
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLA 223 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 223 (467)
+..+++|++|++.++ .+... ....+..+++|++|++.++ .+....
T Consensus 100 ~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~-------------------------------- 144 (477)
T 2id5_A 100 FTGLSNLTKLDISEN-KIVIL-LDYMFQDLYNLKSLEVGDN-DLVYIS-------------------------------- 144 (477)
T ss_dssp STTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEEECCT-TCCEEC--------------------------------
T ss_pred ccCCCCCCEEECCCC-ccccC-ChhHccccccCCEEECCCC-ccceeC--------------------------------
Confidence 346778888888776 34332 2234566777777777654 121100
Q ss_pred hhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCcc
Q 012255 224 VDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLP 303 (467)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 303 (467)
+..+..+++|+.|+++++. +.... ...+..+++|+.|.++++. +..... .....+++|++|++++|.....
T Consensus 145 ----~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~~~~~~~- 215 (477)
T 2id5_A 145 ----HRAFSGLNSLEQLTLEKCN-LTSIP-TEALSHLHGLIVLRLRHLN-INAIRD-YSFKRLYRLKVLEISHWPYLDT- 215 (477)
T ss_dssp ----TTSSTTCTTCCEEEEESCC-CSSCC-HHHHTTCTTCCEEEEESCC-CCEECT-TCSCSCTTCCEEEEECCTTCCE-
T ss_pred ----hhhccCCCCCCEEECCCCc-CcccC-hhHhcccCCCcEEeCCCCc-CcEeCh-hhcccCcccceeeCCCCccccc-
Confidence 0003466788888888775 33322 2334778888988888764 322111 1123578888998888653221
Q ss_pred ccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCC
Q 012255 304 ILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAH 382 (467)
Q Consensus 304 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~ 382 (467)
+... .. ..++|++|++++ +.++..... .+..++ |+.|+++++. ++......+..++
T Consensus 216 --------~~~~----~~-~~~~L~~L~l~~--------n~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 272 (477)
T 2id5_A 216 --------MTPN----CL-YGLNLTSLSITH--------CNLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEGSMLHELL 272 (477)
T ss_dssp --------ECTT----TT-TTCCCSEEEEES--------SCCCSCCHH-HHTTCTTCCEEECCSSC-CCEECTTSCTTCT
T ss_pred --------cCcc----cc-cCccccEEECcC--------CcccccCHH-HhcCccccCeeECCCCc-CCccChhhccccc
Confidence 1110 01 234888998887 344432222 234455 8999988863 4443333455789
Q ss_pred CCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCH
Q 012255 383 YLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 383 ~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~ 447 (467)
+|+.|+++++ .++......+.++++|+.|+++++ .++......+..+++|+.|++++++...+
T Consensus 273 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 273 RLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999984 666655566778999999999995 58876666666789999999999874433
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=2.2e-18 Score=174.44 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=203.3
Q ss_pred CCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccccccc
Q 012255 98 YLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLE 177 (467)
Q Consensus 98 ~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 177 (467)
+|+.|+++++ .++......+..+++|++|+++++ .++. ++..+..+++|++|++.++ .+... ....+..+++|+
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~--lp~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~ 328 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSAN-KFENL-CQISASNFPSLT 328 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS-CCSC--CCSSCCSCTTCCEEECTTC-CCSBG-GGGCGGGCTTCS
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC-ccCC--CChhhcccccCCEEECccC-CcCcC-chhhhhccCcCC
Confidence 6888888887 566554445667899999999986 4442 2223457889999999987 45443 334567788999
Q ss_pred ccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHH
Q 012255 178 DLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVL 257 (467)
Q Consensus 178 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~ 257 (467)
.|++.++....... ......+++|+.|.+....-.... ..+.....+++|+.|+++++. +... ....+
T Consensus 329 ~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~ 396 (606)
T 3t6q_A 329 HLSIKGNTKRLELG-TGCLENLENLRELDLSHDDIETSD---------CCNLQLRNLSHLQSLNLSYNE-PLSL-KTEAF 396 (606)
T ss_dssp EEECCSCSSCCBCC-SSTTTTCTTCCEEECCSSCCCEEE---------ESTTTTTTCTTCCEEECCSCS-CEEE-CTTTT
T ss_pred EEECCCCCcccccc-hhhhhccCcCCEEECCCCcccccc---------CcchhcccCCCCCEEECCCCc-CCcC-CHHHh
Confidence 99998763221111 122345678888877654311100 001114578899999999875 2222 12234
Q ss_pred hcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCC
Q 012255 258 GKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDG 337 (467)
Q Consensus 258 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 337 (467)
..+++|++|+++++. +...........+++|++|++++|. ++......+ ..+++|++|++++
T Consensus 397 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~-~~l~~L~~L~L~~--- 458 (606)
T 3t6q_A 397 KECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSL-------------LDISSEQLF-DGLPALQHLNLQG--- 458 (606)
T ss_dssp TTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCC-------------CBTTCTTTT-TTCTTCCEEECTT---
T ss_pred cCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCc-------------cCCcCHHHH-hCCCCCCEEECCC---
Confidence 678999999999875 4322222223578999999999875 222111112 2689999999998
Q ss_pred CCCccccccHHHHH--HHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEee
Q 012255 338 EFPSISSFTLDGIL--TLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRL 414 (467)
Q Consensus 338 ~~~~~~~~~~~~~~--~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l 414 (467)
+.+++..+. .....++ |+.|+++++ .++......+..+++|+.|+++++ .++......+.+++.| .|++
T Consensus 459 -----n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 459 -----NHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp -----CBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEEC
T ss_pred -----CCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEEC
Confidence 444432111 1234466 999999997 444443445567899999999995 7888777888899999 9999
Q ss_pred cCCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 415 RKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 415 ~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
+++ .++......+..+++|+.|++++|+...
T Consensus 531 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 531 ASN-HISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSS-CCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred cCC-cccccCHhhcccCCCCCEEeCCCCCccc
Confidence 995 5887666667778999999999998544
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=157.45 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=91.8
Q ss_pred hcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCH-HHHHHHHhcCCCCCeEEecccC
Q 012255 258 GKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTD-ESLKALADNCRMLESVRISFSD 336 (467)
Q Consensus 258 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~ 336 (467)
..+++|++|+++++. +....... ...+++|++|+++++. ++. ..+......+++|++|+++++
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-------------l~~l~~~~~~~~~l~~L~~L~Ls~N- 384 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFEN-CGHLTELETLILQMNQ-------------LKELSKIAEMTTQMKSLQQLDISQN- 384 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTT-CCCCSSCCEEECCSSC-------------CCBHHHHHHHHTTCTTCCEEECCSS-
T ss_pred hhCCcccEEEeECCc-cChhhhhh-hccCCCCCEEEccCCc-------------cCccccchHHHhhCCCCCEEECCCC-
Confidence 345666666666654 33311111 1355667777776653 443 122333346778888888773
Q ss_pred CCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhC-CCCCEEeecCCCCcCHHHHHHhcCCCCCCEEee
Q 012255 337 GEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSA-HYLEILELARCQEISDEGLQLACQFPHLSILRL 414 (467)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l 414 (467)
.+++..-.......+ |+.|+++++. ++..... .+ ++|+.|++++| .++.. ...+.++++|+.|++
T Consensus 385 -------~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~l~~~L~~L~Ls~N-~l~~i-p~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 385 -------SVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFR---CLPPRIKVLDLHSN-KIKSI-PKQVVKLEALQELNV 451 (520)
T ss_dssp -------CCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGG---SCCTTCCEEECCSS-CCCCC-CGGGGGCTTCCEEEC
T ss_pred -------cCCcccccchhccCccCCEEECcCCC-CCcchhh---hhcccCCEEECCCC-ccccc-chhhhcCCCCCEEEC
Confidence 333210000112234 8888888763 3332221 22 68888888885 45522 223447889999999
Q ss_pred cCCCCCCccchHhhhcCCCCCeeccCCCCCCCH
Q 012255 415 RKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 415 ~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~ 447 (467)
++| .++......+..+++|+.|++++++-..+
T Consensus 452 ~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 452 ASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCC-cCCccCHHHhccCCcccEEECcCCCCccc
Confidence 985 57754444466688999999999984433
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.68 E-value=1.8e-17 Score=161.65 Aligned_cols=321 Identities=14% Similarity=0.083 Sum_probs=190.3
Q ss_pred CCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccccc
Q 012255 96 CPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLER 175 (467)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 175 (467)
.++|++|+++++ .+++.....+..+++|++|+++++....... ...+..+++|++|++.++ .+... ....+..+++
T Consensus 29 ~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~ 104 (455)
T 3v47_A 29 PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYN-QFLQL-ETGAFNGLAN 104 (455)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTC-TTCEE-CTTTTTTCTT
T ss_pred CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceEC-cccccccccCCEEeCCCC-ccCcc-ChhhccCccc
Confidence 378999999988 6776555567789999999999873221211 223457899999999998 45433 3456788999
Q ss_pred ccccccccCCCCChhhH-HhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCc--hh
Q 012255 176 LEDLLIKNCRAIGEGDL-IKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPG--RG 252 (467)
Q Consensus 176 L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~ 252 (467)
|++|++.++ .++.... ...+..+++|+.|.+....-.... .... ...+++|+.|+++++..... ..
T Consensus 105 L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 105 LEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ---PASF-------FLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp CCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC---CCGG-------GGGCTTCCEEECTTCCBSCCCTTT
T ss_pred CCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccC---cccc-------cCCCCcccEEeCCCCcccccChhh
Confidence 999999987 3443222 233566788998888754311110 0000 34678999999988752211 11
Q ss_pred HHHH------------------------------HhcCCCCcEEEcccCcccchhHHHHHHHh--CCCCCeeeeccCCCC
Q 012255 253 LACV------------------------------LGKCRNLEKIHLDMCVGVRDSDIINMAQT--SSKLRSISLRVPSDF 300 (467)
Q Consensus 253 l~~l------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~ 300 (467)
+..+ +..+++|++|+++++. +.......+... .++|+.|.+.++...
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeecccccc
Confidence 1111 0122345555555443 333333333322 144555555544211
Q ss_pred CccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHH
Q 012255 301 SLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALC 379 (467)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~ 379 (467)
........-.......+. ...+++|+.|++++ +.+++.. ......++ |+.|+++++ .+++.....+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~--------n~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 320 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFK--GLEASGVKTCDLSK--------SKIFALL-KSVFSHFTDLEQLTLAQN-EINKIDDNAFW 320 (455)
T ss_dssp SCCTTCCSSCCCCTTTTG--GGTTSCCCEEECCS--------SCCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTTT
T ss_pred ccccchhhhccCcccccc--cccccCceEEEecC--------ccccccc-hhhcccCCCCCEEECCCC-cccccChhHhc
Confidence 100000000000000000 00235777777776 2333221 11123455 999999886 34443334455
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCH
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~ 447 (467)
.+++|+.|++++| .++......+.++++|+.|++++| .++......+..+++|+.|++++|. ++.
T Consensus 321 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 385 (455)
T 3v47_A 321 GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKS 385 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSC
T ss_pred CcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc-ccc
Confidence 7899999999985 566655566778999999999995 5888777777789999999999985 553
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=6.6e-18 Score=175.05 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=60.6
Q ss_pred hCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCC
Q 012255 356 KCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKL 434 (467)
Q Consensus 356 ~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L 434 (467)
.++ |+.|+++++ .++......+..+++|+.|++++| .++......+..+++|+.|++++| .++......+..+++|
T Consensus 416 ~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 416 NCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTC
T ss_pred cCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCC
Confidence 355 888888775 333333334556788888888875 444444455667888999999885 4776666667778899
Q ss_pred CeeccCCCCCCC
Q 012255 435 DLLAVEDCPQVS 446 (467)
Q Consensus 435 ~~L~l~~c~~~~ 446 (467)
+.|++++|. ++
T Consensus 493 ~~L~L~~N~-l~ 503 (768)
T 3rgz_A 493 NWISLSNNR-LT 503 (768)
T ss_dssp CEEECCSSC-CC
T ss_pred CEEEccCCc-cC
Confidence 999999986 44
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=7.5e-18 Score=170.51 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=35.9
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCC-CCCee
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSH-KLDLL 437 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~-~L~~L 437 (467)
|+.|+++++ .++......+.++++|+.|++++| .+++.....+.++++|+.|++++|. ++..... +..++ +|+.|
T Consensus 475 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~-~~~l~~~L~~l 550 (606)
T 3vq2_A 475 LTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI-LQHFPKSLAFF 550 (606)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC-GGGSCTTCCEE
T ss_pred CCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHh-HhhhcccCcEE
Confidence 555555544 222222222334555555555553 3333333344455555555555532 4422211 33333 35555
Q ss_pred ccCCCCC
Q 012255 438 AVEDCPQ 444 (467)
Q Consensus 438 ~l~~c~~ 444 (467)
++++++.
T Consensus 551 ~l~~N~~ 557 (606)
T 3vq2_A 551 NLTNNSV 557 (606)
T ss_dssp ECCSCCC
T ss_pred EccCCCc
Confidence 5555553
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=8.8e-17 Score=153.38 Aligned_cols=322 Identities=16% Similarity=0.094 Sum_probs=205.3
Q ss_pred hCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHH
Q 012255 62 RFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGIL 141 (467)
Q Consensus 62 ~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~ 141 (467)
.+++++.++++.... ..+.... ...+++|++|+++++ .+++.....+..+++|++|+++++ .++... .
T Consensus 43 ~l~~l~~l~l~~~~l-----~~l~~~~----~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-----RKLPAAL----LDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLP-P 110 (390)
T ss_dssp GGCCCSEEEEESCEE-----SEECTHH----HHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCC-T
T ss_pred ccCCceEEEecCCch-----hhCChhH----hcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCCcCC-H
Confidence 357899999886543 2243332 256899999999887 566654456678899999999986 344322 2
Q ss_pred HHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhh
Q 012255 142 SVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDR 221 (467)
Q Consensus 142 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 221 (467)
..+..+++|++|++.++ .+... ....+..+++|++|+++++ .+.... ...+..+++|+.|.+....-...
T Consensus 111 ~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~------ 180 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNRLTHV------ 180 (390)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCBCC-TTTTSSCTTCCEEECCSSCCSBC------
T ss_pred HHhcCCCCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCC-ccCccC-hhhccCCCCCCEEECCCCcCCcc------
Confidence 23457889999999987 45432 2233567889999999876 233211 12234567777777754421100
Q ss_pred hhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCC
Q 012255 222 LAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFS 301 (467)
Q Consensus 222 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (467)
+ ...+++|+.|+++++. ... +...++|++|+++++. +..... ...++|++|+++++.
T Consensus 181 ------~--~~~l~~L~~L~l~~n~-l~~------~~~~~~L~~L~l~~n~-l~~~~~----~~~~~L~~L~l~~n~--- 237 (390)
T 3o6n_A 181 ------D--LSLIPSLFHANVSYNL-LST------LAIPIAVEELDASHNS-INVVRG----PVNVELTILKLQHNN--- 237 (390)
T ss_dssp ------C--GGGCTTCSEEECCSSC-CSE------EECCSSCSEEECCSSC-CCEEEC----CCCSSCCEEECCSSC---
T ss_pred ------c--cccccccceeeccccc-ccc------cCCCCcceEEECCCCe-eeeccc----cccccccEEECCCCC---
Confidence 0 2356788888887764 222 1345678888888765 332211 234789999998865
Q ss_pred ccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHh
Q 012255 302 LPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCS 380 (467)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~ 380 (467)
+++. .. ...+++|++|++++ +.+++..... +...+ |+.|+++++. ++... ..+..
T Consensus 238 ----------l~~~--~~-l~~l~~L~~L~Ls~--------n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~~ 293 (390)
T 3o6n_A 238 ----------LTDT--AW-LLNYPGLVEVDLSY--------NELEKIMYHP-FVKMQRLERLYISNNR-LVALN-LYGQP 293 (390)
T ss_dssp ----------CCCC--GG-GGGCTTCSEEECCS--------SCCCEEESGG-GTTCSSCCEEECCSSC-CCEEE-CSSSC
T ss_pred ----------Cccc--HH-HcCCCCccEEECCC--------CcCCCcChhH-ccccccCCEEECCCCc-CcccC-cccCC
Confidence 3322 12 23688999999988 3443321111 23345 9999999863 33211 01125
Q ss_pred CCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHHhhccc
Q 012255 381 AHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARSVSF 459 (467)
Q Consensus 381 ~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~ 459 (467)
+++|+.|++++| .++... ..+..+++|+.|+++++. ++... +..+++|+.|++++++ ++.+....+.+....
T Consensus 294 l~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~L~~N~-i~~~~---~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 294 IPTLKVLDLSHN-HLLHVE-RNQPQFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTLSHND-WDCNSLRALFRNVAR 365 (390)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGHHHHTTCSEEECCSSC-CCCCC---CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCT
T ss_pred CCCCCEEECCCC-cceecC-ccccccCcCCEEECCCCc-cceeC---chhhccCCEEEcCCCC-ccchhHHHHHHHHHh
Confidence 799999999996 454321 234567899999999954 77653 4458899999999997 888888877765543
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.66 E-value=9.7e-18 Score=173.79 Aligned_cols=349 Identities=18% Similarity=0.146 Sum_probs=181.1
Q ss_pred hhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhH
Q 012255 61 NRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGI 140 (467)
Q Consensus 61 ~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l 140 (467)
..+++|++|+++..... ........ ....+++|++|+++++ .++.. ..+..+++|++|+++++.-....
T Consensus 148 ~~l~~L~~L~Ls~n~l~-----~~~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~--~~~~~l~~L~~L~Ls~n~l~~~~-- 216 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSIS-----GANVVGWV-LSDGCGELKHLAISGN-KISGD--VDVSRCVNLEFLDVSSNNFSTGI-- 216 (768)
T ss_dssp CCCTTCSEEECCSSCCE-----EETHHHHH-HTTCCTTCCEEECCSS-EEESC--CBCTTCTTCCEEECCSSCCCSCC--
T ss_pred ccCCCCCEEECCCCccC-----CcCChhhh-hhccCCCCCEEECCCC-ccccc--CCcccCCcCCEEECcCCcCCCCC--
Confidence 45678888888754321 11121111 1356778888888776 33321 11246777777777775322211
Q ss_pred HHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccccccccccccccccc-ccch
Q 012255 141 LSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRY-MKVY 219 (467)
Q Consensus 141 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~ 219 (467)
.. +..+++|++|++.++ .+... ....+..+++|++|+++++.-...... ..+++|+.|.+....-... +...
T Consensus 217 ~~-l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 217 PF-LGDCSALQHLDISGN-KLSGD-FSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp CB-CTTCCSCCEEECCSS-CCCSC-HHHHTTTCSSCCEEECCSSCCEESCCC----CCCTTCCEEECCSSEEEESCCCCS
T ss_pred cc-cccCCCCCEEECcCC-cCCCc-ccHHHhcCCCCCEEECCCCcccCccCc----cccCCCCEEECcCCccCCccCHHH
Confidence 11 446777777777776 44432 455667777777777766532111000 0334455544433210000 0000
Q ss_pred -------------hhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhC
Q 012255 220 -------------DRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTS 286 (467)
Q Consensus 220 -------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 286 (467)
+.......+..+..+++|+.|+++++.. .+..-...+..+++|++|+++++. +.......+....
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLS 367 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE-EEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHT
T ss_pred HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc-cCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhh
Confidence 0000001111134556667776666542 211111223566677777776654 2211111111111
Q ss_pred CCCCeeeeccCCCCCcccccc--------------CCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHH
Q 012255 287 SKLRSISLRVPSDFSLPILMS--------------NPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILT 352 (467)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~--------------~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 352 (467)
++|++|+++++.... ..+.. ....+++..-..+ ..+++|+.|++++ +.+++....
T Consensus 368 ~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~--------N~l~~~~p~- 436 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSG-PILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSF--------NYLSGTIPS- 436 (768)
T ss_dssp TTCSEEECCSSEEEE-ECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCS--------SEEESCCCG-
T ss_pred cCCcEEEccCCCcCC-CcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcC--------CcccCcccH-
Confidence 245555554432100 00000 0001111100111 2567888888876 333321111
Q ss_pred HHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcC
Q 012255 353 LIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGS 431 (467)
Q Consensus 353 l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~ 431 (467)
....++ |+.|+++++. ++......+..+++|+.|++++| .++......+.++++|+.|++++| .+++.....+..+
T Consensus 437 ~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l 513 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRL 513 (768)
T ss_dssp GGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGC
T ss_pred HHhcCCCCCEEECCCCc-ccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcC
Confidence 123455 9999999874 44333344567899999999995 555444456778999999999995 4887777777789
Q ss_pred CCCCeeccCCCC
Q 012255 432 HKLDLLAVEDCP 443 (467)
Q Consensus 432 ~~L~~L~l~~c~ 443 (467)
++|+.|++++|.
T Consensus 514 ~~L~~L~L~~N~ 525 (768)
T 3rgz_A 514 ENLAILKLSNNS 525 (768)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEECCCCc
Confidence 999999999996
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=8.9e-16 Score=153.38 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=69.9
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
++|++|++++..... +... .+ ..+++|++|+++++ .++......+..+++|++|+++++ .++... ...
T Consensus 26 ~~L~~L~Ls~n~l~~-----~~~~---~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITY-----IGHG---DL-RACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLS-SSW 93 (549)
T ss_dssp TTCCEEECCSSCCCE-----ECSS---TT-SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCSCC-HHH
T ss_pred CCccEEECcCCccCc-----cChh---hh-hcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-ccCccC-HHH
Confidence 567777776543211 1111 11 45677777777766 455443344556777777777765 343322 233
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccccccccccc
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEV 209 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 209 (467)
+..+++|++|+++++ .+........+..+++|++|++.++..++.... ..+..+++|+.|.+..
T Consensus 94 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 94 FGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKA 157 (549)
T ss_dssp HTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEE
T ss_pred hccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccC
Confidence 456777777777766 333221223455667777777766543332211 1223455666666543
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=7.6e-18 Score=170.46 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=54.6
Q ss_pred CcEeeccccccccHH-HHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCee
Q 012255 359 VRELSLDYVYSFNDV-GMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLL 437 (467)
Q Consensus 359 L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L 437 (467)
|+.|+++++. +++. ....+..+++|+.|++++| .++......+.++++|+.|++++| .++......+..+++|+.|
T Consensus 450 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 450 LNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEE
T ss_pred CCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEE
Confidence 7777776653 2221 1222345677888888775 555544455667788888888885 4777666666667888888
Q ss_pred ccCCCCCCC
Q 012255 438 AVEDCPQVS 446 (467)
Q Consensus 438 ~l~~c~~~~ 446 (467)
++++|. ++
T Consensus 527 ~l~~N~-l~ 534 (606)
T 3vq2_A 527 DCSFNR-IE 534 (606)
T ss_dssp ECTTSC-CC
T ss_pred ECCCCc-Cc
Confidence 888885 54
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=4.3e-18 Score=170.98 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=69.6
Q ss_pred cCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHH
Q 012255 323 NCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQ 401 (467)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~ 401 (467)
.+++|++|++++| .++... ......++ |+.|+++++..........+..+++|+.|++++| .+++....
T Consensus 419 ~l~~L~~L~l~~n--------~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~ 488 (570)
T 2z63_A 419 SLRNLIYLDISHT--------HTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 488 (570)
T ss_dssp TCTTCCEEECTTS--------CCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred cCCCCCEEeCcCC--------cccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChh
Confidence 4566777777663 222111 11123345 8888888764211111223446788888888885 56655455
Q ss_pred HhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 402 LACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 402 ~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
.+.++++|+.|++++| .++......+..+++|+.|++++++
T Consensus 489 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 489 AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 6667888899998885 4777666666668888999888876
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=3.1e-17 Score=160.95 Aligned_cols=279 Identities=17% Similarity=0.066 Sum_probs=188.0
Q ss_pred CCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccccc
Q 012255 96 CPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLER 175 (467)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 175 (467)
.++++.|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++ .+... ....+..+++
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSN-RLKLI-PLGVFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCSC-CTTSSTTCTT
T ss_pred CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCC-cCCcc-CcccccCCCC
Confidence 368899999887 676655556678899999999986 444322 233457889999999887 44432 2234566788
Q ss_pred ccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHH
Q 012255 176 LEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLAC 255 (467)
Q Consensus 176 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 255 (467)
|++|+++++. +.... +..+..+++|++|+++++. +..... .
T Consensus 106 L~~L~Ls~n~-i~~~~------------------------------------~~~~~~l~~L~~L~l~~n~-l~~~~~-~ 146 (477)
T 2id5_A 106 LTKLDISENK-IVILL------------------------------------DYMFQDLYNLKSLEVGDND-LVYISH-R 146 (477)
T ss_dssp CCEEECTTSC-CCEEC------------------------------------TTTTTTCTTCCEEEECCTT-CCEECT-T
T ss_pred CCEEECCCCc-cccCC------------------------------------hhHccccccCCEEECCCCc-cceeCh-h
Confidence 8888887652 22100 0003467899999998765 222211 1
Q ss_pred HHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEeccc
Q 012255 256 VLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFS 335 (467)
Q Consensus 256 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 335 (467)
.+..+++|++|+++++. ++..... ....+++|+.|++.++. +....... ...+++|+.|++++|
T Consensus 147 ~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~l~~n~-------------i~~~~~~~-~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCN-LTSIPTE-ALSHLHGLIVLRLRHLN-------------INAIRDYS-FKRLYRLKVLEISHW 210 (477)
T ss_dssp SSTTCTTCCEEEEESCC-CSSCCHH-HHTTCTTCCEEEEESCC-------------CCEECTTC-SCSCTTCCEEEEECC
T ss_pred hccCCCCCCEEECCCCc-CcccChh-HhcccCCCcEEeCCCCc-------------CcEeChhh-cccCcccceeeCCCC
Confidence 24678999999999885 5443322 33578999999999865 22111111 125789999999884
Q ss_pred CCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeec
Q 012255 336 DGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLR 415 (467)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~ 415 (467)
... ..+.. .......|+.|+++++ .++......+..+++|+.|+++++ .++......+.++++|+.|+++
T Consensus 211 ~~~----~~~~~----~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 211 PYL----DTMTP----NCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp TTC----CEECT----TTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECC
T ss_pred ccc----cccCc----ccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECC
Confidence 110 01111 1111223999999996 455544556678999999999985 5666555567789999999999
Q ss_pred CCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 416 KCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 416 ~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
++ .++......+..+++|+.|++++|. ++
T Consensus 281 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~ 309 (477)
T 2id5_A 281 GG-QLAVVEPYAFRGLNYLRVLNVSGNQ-LT 309 (477)
T ss_dssp SS-CCSEECTTTBTTCTTCCEEECCSSC-CS
T ss_pred CC-ccceECHHHhcCcccCCEEECCCCc-Cc
Confidence 95 5888777778789999999999995 55
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=3.7e-16 Score=156.10 Aligned_cols=183 Identities=21% Similarity=0.216 Sum_probs=115.0
Q ss_pred CCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccccc
Q 012255 96 CPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLER 175 (467)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 175 (467)
.++|++|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|+++++ .+... ....++.+++
T Consensus 25 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSS-RINTIE-GDAFYSLGSLEHLDLSDN-HLSSL-SSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCSC-CHHHHTTCTT
T ss_pred CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCC-CcCccC-hhhccccccCCEEECCCC-ccCcc-CHHHhccCCC
Confidence 378999999998 576654456678999999999987 454322 233458899999999998 55543 4456788999
Q ss_pred ccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHH
Q 012255 176 LEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLAC 255 (467)
Q Consensus 176 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 255 (467)
|++|+++++ .++..........+++|+.|.+......... ++. .+..+++|++|+++++. +.... ..
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~-------~~~~l~~L~~L~L~~n~-l~~~~-~~ 166 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEI---RRI-------DFAGLTSLNELEIKALS-LRNYQ-SQ 166 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE---CTT-------TTTTCCEEEEEEEEETT-CCEEC-TT
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCcccccc---CHh-------hhhcccccCeeeccCCc-ccccC-hh
Confidence 999999887 3433222234566788888888654311111 000 13456788888887665 22211 12
Q ss_pred HHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCC
Q 012255 256 VLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPS 298 (467)
Q Consensus 256 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (467)
.+..+++|++|.++++. ... ....+...+++|++|+++++.
T Consensus 167 ~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSE-SAF-LLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp TTTTCSEEEEEEEECSB-STT-HHHHHHHSTTTBSEEEEESCB
T ss_pred hhhccccCceEecccCc-ccc-cchhhHhhcccccEEEccCCc
Confidence 23556677777776554 221 112223346677777776654
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=1.3e-17 Score=167.59 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=72.6
Q ss_pred HhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhh
Q 012255 60 CNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCG 139 (467)
Q Consensus 60 ~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 139 (467)
...+++|++|+++.... ..+.+. . ...+++|++|+++++ .++......+..+++|++|+++++ .++...
T Consensus 48 ~~~l~~L~~L~Ls~n~i-----~~i~~~---~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~ 116 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEI-----QTIEDG---A-YQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLE 116 (570)
T ss_dssp TTTCSSCCEEECTTCCC-----CEECTT---T-TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTS-CCCCST
T ss_pred hhCCCCceEEECCCCcC-----CccCcc---c-ccCchhCCEEeCcCC-cCCccCHhhhcCcccccccccccc-ccccCC
Confidence 46677888888875432 112111 1 146788888888877 465544455667888888888875 333221
Q ss_pred HHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccC
Q 012255 140 ILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNC 184 (467)
Q Consensus 140 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 184 (467)
-. .+..+++|++|++.++ .+....+...+..+++|++|++.++
T Consensus 117 ~~-~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 117 NF-PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TC-SCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred Cc-cccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCC
Confidence 10 1347889999999887 4443224456788899999998876
No 31
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=7.7e-15 Score=138.27 Aligned_cols=267 Identities=15% Similarity=0.119 Sum_probs=175.3
Q ss_pred eeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCch---HHHHHhcccc-cccccccccCCCCChhhHHhhccCcccc
Q 012255 127 LKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSV---EWLEYLGKLE-RLEDLLIKNCRAIGEGDLIKLGPCWRKL 202 (467)
Q Consensus 127 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L 202 (467)
++++.+ .++. .++.+....++|++|+++++ .++.. .+...+..++ +|++|+++++ .+++.+...+...
T Consensus 3 ~~ls~n-~~~~-~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~---- 74 (362)
T 3goz_A 3 YKLTLH-PGSN-PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQI---- 74 (362)
T ss_dssp EECCCC-TTCC-HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHH----
T ss_pred cccccc-cchH-HHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHH----
Confidence 345543 3432 34566666677999999998 45443 2346677788 8999999886 4544333222110
Q ss_pred cccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchh---HHHHHhcC-CCCcEEEcccCcccchhH
Q 012255 203 KRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRG---LACVLGKC-RNLEKIHLDMCVGVRDSD 278 (467)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---l~~l~~~~-~~L~~L~l~~~~~~~~~~ 278 (467)
+ ...+++|++|+++++. +++.. +...+..+ ++|++|+++++. +++.+
T Consensus 75 ------------------------l---~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 75 ------------------------L---AAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp ------------------------H---HTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred ------------------------H---hccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 0 1123799999999987 44433 33344555 899999999986 66655
Q ss_pred HHHHHH---h-CCCCCeeeeccCCCCCccccccCCCCCCHHHHHHH---HhcCC-CCCeEEecccCCCCCccccccHHHH
Q 012255 279 IINMAQ---T-SSKLRSISLRVPSDFSLPILMSNPLRLTDESLKAL---ADNCR-MLESVRISFSDGEFPSISSFTLDGI 350 (467)
Q Consensus 279 ~~~~~~---~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~ 350 (467)
...+.. . +++|++|++++|. +++.+...+ ....+ +|++|++++ +.+++.+.
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~-------------l~~~~~~~l~~~l~~~~~~L~~L~Ls~--------n~l~~~~~ 184 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGND-------------LGIKSSDELIQILAAIPANVNSLNLRG--------NNLASKNC 184 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSC-------------GGGSCHHHHHHHHHTSCTTCCEEECTT--------SCGGGSCH
T ss_pred HHHHHHHHHhCCCceeEEEccCCc-------------CCHHHHHHHHHHHhcCCccccEeeecC--------CCCchhhH
Confidence 555433 3 4699999999864 554333333 23455 999999998 46655544
Q ss_pred HHH---HHhC-C-CcEeeccccccccHHHHHHHH----h-CCCCCEEeecCCCCcCHHHHHHh----cCCCCCCEEeecC
Q 012255 351 LTL---IQKC-P-VRELSLDYVYSFNDVGMEALC----S-AHYLEILELARCQEISDEGLQLA----CQFPHLSILRLRK 416 (467)
Q Consensus 351 ~~l---~~~~-~-L~~L~l~~~~~~~~~~~~~l~----~-~~~L~~L~l~~c~~it~~~~~~l----~~~~~L~~L~l~~ 416 (467)
..+ ...+ + |+.|+++++ .+++.+...+. . .++|+.|+++++ .+++.+...+ ..+++|+.|++++
T Consensus 185 ~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 185 AELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred HHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 433 3444 3 999999997 46665544443 4 469999999995 6777555433 3678999999999
Q ss_pred CC--CCCccchHhhhc----CCCCCeeccCCCCCCCHHHHHHHH
Q 012255 417 CL--GVTDDGLKPLVG----SHKLDLLAVEDCPQVSERGVQGAA 454 (467)
Q Consensus 417 c~--~it~~~~~~l~~----~~~L~~L~l~~c~~~~~~~~~~l~ 454 (467)
|. .++..++..+.. +++|+.|++++++ +.+.....++
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~~~~~~~ 305 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPSHSIPIS 305 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGGGCHHHH
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCcchHHHH
Confidence 64 477776766654 6778899999996 7765433333
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=2.6e-16 Score=161.41 Aligned_cols=342 Identities=16% Similarity=0.072 Sum_probs=156.5
Q ss_pred CCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHH
Q 012255 63 FGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILS 142 (467)
Q Consensus 63 ~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~ 142 (467)
.++|++|+++...... +....+..+ ..++|++|+++++ .++......+..+++|++|+++++ .++... ..
T Consensus 221 ~~~L~~L~L~~n~l~~-----~~~~~~~~l--~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~ 290 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLST-----TSNTTFLGL--KWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYN-NIQHLF-SH 290 (680)
T ss_dssp TSCCCEEECTTSCCCE-----ECTTTTGGG--GGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSC-CBSEEC-TT
T ss_pred hccccEEEccCCcccc-----cChhHhhcc--CcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCC-ccCccC-hh
Confidence 3678888877543211 111111111 1245777777776 455433344556777777777765 333211 12
Q ss_pred HHhcCCCCcEEeccCCcccCchH---HH----HHhcccccccccccccCCCCChhhHHhhccCcccccccccccccc-cc
Q 012255 143 VVVGCKNLTVLHLIRCLNVNSVE---WL----EYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVN-YR 214 (467)
Q Consensus 143 ~~~~~~~L~~L~l~~~~~~~~~~---~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~ 214 (467)
.+..+++|+.|++.++....... +. ..+..+++|++|++.++. ++... ...+..+++|+.|.+..... ..
T Consensus 291 ~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTCBSCCC
T ss_pred hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC-hhHhccccCCcEEECCCCchhhh
Confidence 23466777777776542111000 00 133455666666666542 22111 11223455566655543210 00
Q ss_pred cccc--h-------------hhhhhhhh-hhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhH
Q 012255 215 YMKV--Y-------------DRLAVDRW-QRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSD 278 (467)
Q Consensus 215 ~~~~--~-------------~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 278 (467)
..+. + ....+..+ +..+..+++|+.|+++++.. ........+..+++|++|+++++. +....
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 446 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNK-YLQLT 446 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-EEECCSGGGTTCTTCCEEECCSCS-EEECC
T ss_pred hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC-ccccCcccccCcccccEEecCCCC-cceeC
Confidence 0000 0 00000000 11134566777777776542 111111123556777777776654 22111
Q ss_pred HHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC
Q 012255 279 IINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP 358 (467)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (467)
... ...+++|++|.+.++.... + .........+++|+.|+++++ .++...- ..+..++
T Consensus 447 ~~~-~~~~~~L~~L~l~~n~l~~----------~--~~~p~~~~~l~~L~~L~Ls~N--------~l~~i~~-~~~~~l~ 504 (680)
T 1ziw_A 447 RNS-FALVPSLQRLMLRRVALKN----------V--DSSPSPFQPLRNLTILDLSNN--------NIANIND-DMLEGLE 504 (680)
T ss_dssp TTT-TTTCTTCCEEECTTSCCBC----------T--TCSSCTTTTCTTCCEEECCSS--------CCCCCCT-TTTTTCT
T ss_pred hhh-hhcCcccccchhccccccc----------c--ccCCcccccCCCCCEEECCCC--------CCCcCCh-hhhcccc
Confidence 111 1245666666666543100 0 000001124667777777662 2221110 1112344
Q ss_pred -CcEeeccccccccHHH--------HHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhh
Q 012255 359 -VRELSLDYVYSFNDVG--------MEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLV 429 (467)
Q Consensus 359 -L~~L~l~~~~~~~~~~--------~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~ 429 (467)
|+.|+++++. ++... ...+..+++|+.|+++++ .++......+.++++|+.|++++ +.++......+.
T Consensus 505 ~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~ 581 (680)
T 1ziw_A 505 KLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFN 581 (680)
T ss_dssp TCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT
T ss_pred ccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhC
Confidence 7777776652 22110 011335667777777663 44433333455666777777766 346654444444
Q ss_pred cCCCCCeeccCCCC
Q 012255 430 GSHKLDLLAVEDCP 443 (467)
Q Consensus 430 ~~~~L~~L~l~~c~ 443 (467)
.+++|+.|++++|.
T Consensus 582 ~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 582 NQVSLKSLNLQKNL 595 (680)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCc
Confidence 56677777777663
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.60 E-value=3.5e-16 Score=158.42 Aligned_cols=347 Identities=14% Similarity=0.107 Sum_probs=182.7
Q ss_pred HHhhCCCccEEEeeccccccc-C-CCCCCH--H-H---HHHHHh--hCCCCCEEeecCCCCCChHhHHHHhcCCCCceee
Q 012255 59 LCNRFGNLTKVEISYAGWMSR-L-GKQLDD--Q-G---LLILSN--SCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLK 128 (467)
Q Consensus 59 ~~~~~~~L~~L~l~~~~~~~~-~-~~~i~~--~-~---l~~l~~--~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~ 128 (467)
.+..+++|++|+++....... . ..++.. . . +..-.. .+++|++|+++++ .+.......+..+++|++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEEE
Confidence 467788999999986543210 0 000000 0 0 000012 6789999999888 34333334566889999999
Q ss_pred ccCCCCCChhhHHHHHhc------CCCCcEEeccCCcccCchHHHH--HhcccccccccccccCCCCC-hhhHHhhccCc
Q 012255 129 LKFTTRITGCGILSVVVG------CKNLTVLHLIRCLNVNSVEWLE--YLGKLERLEDLLIKNCRAIG-EGDLIKLGPCW 199 (467)
Q Consensus 129 l~~~~~~~~~~l~~~~~~------~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 199 (467)
++++..++...++..... +++|++|++.++ .+.. +.. .+..+++|+.|+++++. +. ... .+..+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N~-l~g~ip---~~~~l 352 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYNQ-LEGKLP---AFGSE 352 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSCC-CEEECC---CCEEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCCc-Cccchh---hhCCC
Confidence 998743654233443333 488999999887 4543 333 67788889999887763 22 222 22345
Q ss_pred ccccccccccccccccccch------------hhhhhhhhhhcccC--CCCcceeeccccCccCchhHHHHHh-------
Q 012255 200 RKLKRLQFEVDVNYRYMKVY------------DRLAVDRWQRQRVP--CENMVELSLKNCIISPGRGLACVLG------- 258 (467)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~l~~l~~------- 258 (467)
++|+.|.+....-...+..+ ....+..++..... +++|+.|+++++.. .... ...+.
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~~~-p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI-GSVD-GKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT-TTTT-TCSSCTTCSSCC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcC-CCcc-hhhhcccccccc
Confidence 66666666543211110000 00000011111111 23566666665542 1110 00012
Q ss_pred cCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHH---HhcCCCCCeEEeccc
Q 012255 259 KCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKAL---ADNCRMLESVRISFS 335 (467)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~ 335 (467)
.+++|++|+++++. ++.. ...+...+++|++|+++++... .+....+... ...+++|+.|++++
T Consensus 431 ~~~~L~~L~Ls~N~-l~~l-p~~~~~~l~~L~~L~Ls~N~l~----------~i~~~~~~~~~~~~~~l~~L~~L~Ls~- 497 (636)
T 4eco_A 431 KGINVSSINLSNNQ-ISKF-PKELFSTGSPLSSINLMGNMLT----------EIPKNSLKDENENFKNTYLLTSIDLRF- 497 (636)
T ss_dssp CCCCEEEEECCSSC-CCSC-CTHHHHTTCCCSEEECCSSCCS----------BCCSSSSEETTEECTTGGGCCEEECCS-
T ss_pred cCCCCCEEECcCCc-cCcC-CHHHHccCCCCCEEECCCCCCC----------CcCHHHhccccccccccCCccEEECcC-
Confidence 34567777777664 3311 1223345677777777765421 1111000000 00122778888876
Q ss_pred CCCCCccccccHHHHHHHH--HhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCC-----CcCHHHHHHhcCCC
Q 012255 336 DGEFPSISSFTLDGILTLI--QKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQ-----EISDEGLQLACQFP 407 (467)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~--~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~-----~it~~~~~~l~~~~ 407 (467)
+.++. +.... ...+ |+.|+++++. ++. ....+.++++|+.|+++++. .+.......+.+++
T Consensus 498 -------N~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 498 -------NKLTK--LSDDFRATTLPYLVGIDLSYNS-FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp -------SCCCB--CCGGGSTTTCTTCCEEECCSSC-CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred -------CcCCc--cChhhhhccCCCcCEEECCCCC-CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 33331 11111 2455 8888888863 333 22334568888998886432 23333334556788
Q ss_pred CCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 408 HLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 408 ~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+|+.|++++|. ++..... + .++|+.|++++|+
T Consensus 567 ~L~~L~Ls~N~-l~~ip~~-~--~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 567 SLTQLQIGSND-IRKVNEK-I--TPNISVLDIKDNP 598 (636)
T ss_dssp SCCEEECCSSC-CCBCCSC-C--CTTCCEEECCSCT
T ss_pred CCCEEECCCCc-CCccCHh-H--hCcCCEEECcCCC
Confidence 89999998854 5432211 2 4789999999986
No 34
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.59 E-value=9e-16 Score=125.49 Aligned_cols=102 Identities=24% Similarity=0.386 Sum_probs=84.9
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCC----CCCCEEeecCCCCCCccchHhhhcCCCC
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQF----PHLSILRLRKCLGVTDDGLKPLVGSHKL 434 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~----~~L~~L~l~~c~~it~~~~~~l~~~~~L 434 (467)
|+.|++++|. +++.++..+..+++|++|++++|..+||.++..++.. ++|+.|+|++|.+||+.|+..+.++++|
T Consensus 63 L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 63 IQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp EEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred EeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 6667777765 8888888888899999999999999999999988864 5799999999989999999998889999
Q ss_pred CeeccCCCCCCCHHH--HHHHHhhccccc
Q 012255 435 DLLAVEDCPQVSERG--VQGAARSVSFRQ 461 (467)
Q Consensus 435 ~~L~l~~c~~~~~~~--~~~l~~~~~~~~ 461 (467)
+.|++++|++||+.+ +..+.+.+|..+
T Consensus 142 ~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 999999999999865 566666766644
No 35
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=6.2e-14 Score=132.04 Aligned_cols=173 Identities=13% Similarity=0.060 Sum_probs=115.2
Q ss_pred CCcceeeccccCccCchhHHH---HHhc-CCCCcEEEcccCcccchhHHHHH---HHhCC-CCCeeeeccCCCCCccccc
Q 012255 235 ENMVELSLKNCIISPGRGLAC---VLGK-CRNLEKIHLDMCVGVRDSDIINM---AQTSS-KLRSISLRVPSDFSLPILM 306 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~---l~~~-~~~L~~L~l~~~~~~~~~~~~~~---~~~~~-~L~~L~l~~~~~~~~~~~~ 306 (467)
++|+.|+++++. +.+..... .+.. +++|++|+++++. +++.+...+ ....+ +|++|++++|.-
T Consensus 109 ~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l------- 179 (362)
T 3goz_A 109 FTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNL------- 179 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCG-------
T ss_pred CCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCC-------
Confidence 577777777765 44443333 3344 4699999999986 665554443 33455 999999999751
Q ss_pred cCCCCCCHHHHHHHHhcC-CCCCeEEecccCCCCCccccccHHHHHHHHH---h-CC-CcEeeccccccccHHHHHHHH-
Q 012255 307 SNPLRLTDESLKALADNC-RMLESVRISFSDGEFPSISSFTLDGILTLIQ---K-CP-VRELSLDYVYSFNDVGMEALC- 379 (467)
Q Consensus 307 ~~~~~~~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~---~-~~-L~~L~l~~~~~~~~~~~~~l~- 379 (467)
.......+......+ ++|++|++++ +.+++.+...+.. . ++ |+.|+++++ .+++.+...+.
T Consensus 180 ---~~~~~~~l~~~l~~~~~~L~~L~Ls~--------N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~ 247 (362)
T 3goz_A 180 ---ASKNCAELAKFLASIPASVTSLDLSA--------NLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKL 247 (362)
T ss_dssp ---GGSCHHHHHHHHHTSCTTCCEEECTT--------SCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHH
T ss_pred ---chhhHHHHHHHHHhCCCCCCEEECCC--------CCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHH
Confidence 122333344333456 4999999998 6677755544433 3 44 999999996 56665443333
Q ss_pred ---hCCCCCEEeecCCC--CcCHHHHHHhc----CCCCCCEEeecCCCCCCccchHhhh
Q 012255 380 ---SAHYLEILELARCQ--EISDEGLQLAC----QFPHLSILRLRKCLGVTDDGLKPLV 429 (467)
Q Consensus 380 ---~~~~L~~L~l~~c~--~it~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~~l~ 429 (467)
.+++|+.|++++|. .+++.++..+. ++++|+.|++++ +.+.+.....+.
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~~~~~~~~ 305 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHPSHSIPIS 305 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCGGGCHHHH
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCCcchHHHH
Confidence 57999999999874 47777777654 467788999998 458876444433
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=7.3e-15 Score=142.44 Aligned_cols=297 Identities=15% Similarity=0.124 Sum_probs=180.1
Q ss_pred hhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhH
Q 012255 61 NRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGI 140 (467)
Q Consensus 61 ~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l 140 (467)
..+++|++|+++..... .+. .+ ..+++|++|+++++ .++... ++.+++|++|+++++ .++...
T Consensus 39 ~~l~~L~~L~Ls~n~l~-----~~~-----~l-~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSIT-----DMT-----GI-EKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSN-KLTNLD- 101 (457)
T ss_dssp HHHTTCCEEECCSSCCC-----CCT-----TG-GGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSS-CCSCCC-
T ss_pred hHcCCCCEEEccCCCcc-----cCh-----hh-cccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCC-CCceee-
Confidence 45678888888765431 121 22 46788888888887 565532 567788888888876 444432
Q ss_pred HHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchh
Q 012255 141 LSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYD 220 (467)
Q Consensus 141 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 220 (467)
+..+++|++|++.++ .+... .++.+++|++|++.++ .++... ...+++|+.|.+........
T Consensus 102 ---~~~l~~L~~L~L~~N-~l~~l----~~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~----- 163 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTN-KLTKL----DVSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITK----- 163 (457)
T ss_dssp ---CTTCTTCCEEECCSS-CCSCC----CCTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCC-----
T ss_pred ---cCCCCcCCEEECCCC-cCCee----cCCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccc-----
Confidence 347788888888887 55443 1667788888888765 333321 34566777777654421110
Q ss_pred hhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCC
Q 012255 221 RLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDF 300 (467)
Q Consensus 221 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (467)
++ ...+++|+.|+++++. +.... +..+++|+.|.++++. ++... ...+++|++|+++++.
T Consensus 164 ------~~--~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~-- 223 (457)
T 3bz5_A 164 ------LD--VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSNK-- 223 (457)
T ss_dssp ------CC--CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSSC--
T ss_pred ------cc--cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCCc--
Confidence 11 3456788888888765 33322 4667888888887765 44322 2456788888888764
Q ss_pred CccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-----------CcEeecccccc
Q 012255 301 SLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-----------VRELSLDYVYS 369 (467)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-----------L~~L~l~~~~~ 369 (467)
++... ...+++|+.|+++++ .++...+ ..++ |+.|+++++..
T Consensus 224 -----------l~~ip----~~~l~~L~~L~l~~N--------~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 224 -----------LTEID----VTPLTQLTYFDCSVN--------PLTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp -----------CSCCC----CTTCTTCSEEECCSS--------CCSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred -----------ccccC----ccccCCCCEEEeeCC--------cCCCcCH----HHCCCCCEEeccCCCCCEEECCCCcc
Confidence 22211 225778888888773 3332211 1122 45555555543
Q ss_pred ccHHHHHHHHhCCCCCEEeecCCCCcCHHH-----HH--HhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCC
Q 012255 370 FNDVGMEALCSAHYLEILELARCQEISDEG-----LQ--LACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDC 442 (467)
Q Consensus 370 ~~~~~~~~l~~~~~L~~L~l~~c~~it~~~-----~~--~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 442 (467)
+.... ...+++|+.|++++|....... +. .+.++++|+.|+++++ .++.. .+..+++|+.|+++++
T Consensus 277 ~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l---~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 277 LIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL---DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC---CCTTCTTCSEEECCSS
T ss_pred CCccc---ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc---ccccCCcCcEEECCCC
Confidence 32211 2357888888888875332211 11 2446788888888884 57763 3666889999999888
Q ss_pred CCCCH
Q 012255 443 PQVSE 447 (467)
Q Consensus 443 ~~~~~ 447 (467)
. ++.
T Consensus 350 ~-l~~ 353 (457)
T 3bz5_A 350 H-IQD 353 (457)
T ss_dssp C-CCB
T ss_pred C-CCC
Confidence 5 554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.4e-15 Score=153.15 Aligned_cols=318 Identities=16% Similarity=0.091 Sum_probs=195.9
Q ss_pred CCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHH
Q 012255 63 FGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILS 142 (467)
Q Consensus 63 ~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~ 142 (467)
+++++.++++.... ..+.... ...+++|+.|+++++ .++......++.+++|++|+++++ .++... ..
T Consensus 50 l~~l~~l~l~~~~l-----~~lp~~~----~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTM-----RKLPAAL----LDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLP-PH 117 (597)
T ss_dssp GCCCSEEEESSCEE-----SEECTHH----HHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCC-TT
T ss_pred CCCceEEEeeCCCC-----CCcCHHH----HccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCCCCC-HH
Confidence 46788888875433 2233332 256789999999887 566654446678889999999876 344322 22
Q ss_pred HHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhh
Q 012255 143 VVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRL 222 (467)
Q Consensus 143 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 222 (467)
.+..+++|+.|++.++ .+... ....+..+++|+.|+++++ .++... ...+..+++|+.|.+....-..
T Consensus 118 ~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-------- 185 (597)
T 3oja_B 118 VFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNRLTH-------- 185 (597)
T ss_dssp TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTSCCSB--------
T ss_pred HHcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCCCCCC--------
Confidence 3457889999999887 45432 2233567888999988876 233211 1223455677777765442110
Q ss_pred hhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCc
Q 012255 223 AVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSL 302 (467)
Q Consensus 223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 302 (467)
++ ...+++|+.|+++++. +.. +...++|+.|+++++. +..... ...++|+.|+++++.
T Consensus 186 ----~~--~~~l~~L~~L~l~~n~-l~~------l~~~~~L~~L~ls~n~-l~~~~~----~~~~~L~~L~L~~n~---- 243 (597)
T 3oja_B 186 ----VD--LSLIPSLFHANVSYNL-LST------LAIPIAVEELDASHNS-INVVRG----PVNVELTILKLQHNN---- 243 (597)
T ss_dssp ----CC--GGGCTTCSEEECCSSC-CSE------EECCTTCSEEECCSSC-CCEEEC----SCCSCCCEEECCSSC----
T ss_pred ----cC--hhhhhhhhhhhcccCc-ccc------ccCCchhheeeccCCc-cccccc----ccCCCCCEEECCCCC----
Confidence 00 2356778888887754 222 1345678888888765 322110 123678888888764
Q ss_pred cccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhC
Q 012255 303 PILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSA 381 (467)
Q Consensus 303 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~ 381 (467)
+++. .. ...+++|+.|++++ +.+++..... +..++ |+.|+++++. ++... ..+..+
T Consensus 244 ---------l~~~--~~-l~~l~~L~~L~Ls~--------N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~-~~~~~l 300 (597)
T 3oja_B 244 ---------LTDT--AW-LLNYPGLVEVDLSY--------NELEKIMYHP-FVKMQRLERLYISNNR-LVALN-LYGQPI 300 (597)
T ss_dssp ---------CCCC--GG-GGGCTTCSEEECCS--------SCCCEEESGG-GTTCSSCCEEECTTSC-CCEEE-CSSSCC
T ss_pred ---------CCCC--hh-hccCCCCCEEECCC--------CccCCCCHHH-hcCccCCCEEECCCCC-CCCCC-cccccC
Confidence 3321 12 23688999999987 3443321111 22345 9999998863 33211 111247
Q ss_pred CCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHHhh
Q 012255 382 HYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAARS 456 (467)
Q Consensus 382 ~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~~~ 456 (467)
++|+.|++++| .++.. ...+..+++|+.|++++|. ++... +..+++|+.|++++|+ ++-+.+..+.+.
T Consensus 301 ~~L~~L~Ls~N-~l~~i-~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~~~L~~L~l~~N~-~~~~~~~~~~~~ 368 (597)
T 3oja_B 301 PTLKVLDLSHN-HLLHV-ERNQPQFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTLSHND-WDCNSLRALFRN 368 (597)
T ss_dssp TTCCEEECCSS-CCCCC-GGGHHHHTTCSEEECCSSC-CCCCC---CCTTCCCSEEECCSSC-EEHHHHHHHTTT
T ss_pred CCCcEEECCCC-CCCcc-CcccccCCCCCEEECCCCC-CCCcC---hhhcCCCCEEEeeCCC-CCChhHHHHHHH
Confidence 89999999986 44432 1234567899999999964 66543 4448899999999997 676666666543
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=2.4e-15 Score=155.44 Aligned_cols=351 Identities=15% Similarity=0.127 Sum_probs=175.6
Q ss_pred HHhhCCCccEEEeeccccccc-CC-CCCC---H----HHHHHH-HhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceee
Q 012255 59 LCNRFGNLTKVEISYAGWMSR-LG-KQLD---D----QGLLIL-SNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLK 128 (467)
Q Consensus 59 ~~~~~~~L~~L~l~~~~~~~~-~~-~~i~---~----~~l~~l-~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~ 128 (467)
.+..+++|+.|+++....... .. ..+. . ..-..+ ...+++|+.|++++| .+.......+..+++|+.|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHHHhCCCCCCEEE
Confidence 367788999999986543210 00 0000 0 000111 126788999999887 33333334566888899999
Q ss_pred ccCCCCCChhhHHHHH-------hcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccc
Q 012255 129 LKFTTRITGCGILSVV-------VGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRK 201 (467)
Q Consensus 129 l~~~~~~~~~~l~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 201 (467)
++++..++...++..+ ..+++|+.|++.++ .+........+..+++|+.|+++++. ++... .+..+++
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp---~~~~L~~ 596 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK-VRHLE---AFGTNVK 596 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC---CCCTTSE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCC-cccch---hhcCCCc
Confidence 8886435541233322 24458888888887 44432111267778888888887652 33222 3345566
Q ss_pred ccccccccccccccccch------------hhhhhhhhhhcccC--CCCcceeeccccCccCc-hhHHHHHh--cCCCCc
Q 012255 202 LKRLQFEVDVNYRYMKVY------------DRLAVDRWQRQRVP--CENMVELSLKNCIISPG-RGLACVLG--KCRNLE 264 (467)
Q Consensus 202 L~~L~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~-~~l~~l~~--~~~~L~ 264 (467)
|+.|.+....-...+... ....+..++..... .++|+.|+++++..... ..+..-.. .+++|+
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 666666543211110000 00000011111111 12355555555431110 00000001 233667
Q ss_pred EEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHH---HhcCCCCCeEEecccCCCCCc
Q 012255 265 KIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKAL---ADNCRMLESVRISFSDGEFPS 341 (467)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~ 341 (467)
.|+++++. +... ...+...+++|+.|+++++... .+....+... ...|++|+.|++++|
T Consensus 677 ~L~Ls~N~-L~~l-p~~~~~~l~~L~~L~Ls~N~L~----------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N------ 738 (876)
T 4ecn_A 677 TVTLSYNE-IQKF-PTELFATGSPISTIILSNNLMT----------SIPENSLKPKDGNYKNTYLLTTIDLRFN------ 738 (876)
T ss_dssp EEECCSSC-CCSC-CHHHHHTTCCCSEEECCSCCCS----------CCCTTSSSCTTSCCTTGGGCCEEECCSS------
T ss_pred EEEccCCc-CCcc-CHHHHccCCCCCEEECCCCcCC----------ccChHHhccccccccccCCccEEECCCC------
Confidence 77776654 3321 1223345677777777765411 1111100000 012337777877763
Q ss_pred cccccHHHHHHHH--HhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCC-----CcCHHHHHHhcCCCCCCEEe
Q 012255 342 ISSFTLDGILTLI--QKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQ-----EISDEGLQLACQFPHLSILR 413 (467)
Q Consensus 342 ~~~~~~~~~~~l~--~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~-----~it~~~~~~l~~~~~L~~L~ 413 (467)
.++. +.... ...+ |+.|+++++. ++. ....+..+++|+.|+++++. .+.......+.++++|+.|+
T Consensus 739 --~L~~--lp~~l~~~~l~~L~~L~Ls~N~-L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 739 --KLTS--LSDDFRATTLPYLSNMDVSYNC-FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp --CCCC--CCGGGSTTTCTTCCEEECCSSC-CSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred --CCcc--chHHhhhccCCCcCEEEeCCCC-CCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 3331 11111 2345 8888888863 332 12234467888888886532 23333334556788888888
Q ss_pred ecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 414 LRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 414 l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+++|. ++.... .+ +++|+.|++++|+
T Consensus 813 Ls~N~-L~~Ip~-~l--~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 813 IGSND-IRKVDE-KL--TPQLYILDIADNP 838 (876)
T ss_dssp CCSSC-CCBCCS-CC--CSSSCEEECCSCT
T ss_pred CCCCC-CCccCH-hh--cCCCCEEECCCCC
Confidence 88854 532211 11 4688888888887
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=2e-15 Score=156.07 Aligned_cols=334 Identities=13% Similarity=0.119 Sum_probs=192.8
Q ss_pred hCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCCh-HhHHHHh-------cCCCCceeeccCCC
Q 012255 62 RFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITD-VGLCYLA-------SCLNLSTLKLKFTT 133 (467)
Q Consensus 62 ~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~-------~~~~L~~L~l~~~~ 133 (467)
.+++|++|+++...... .+.. .+ ..+++|+.|+++++..++. .....+. .+++|++|+++++
T Consensus 489 ~L~~L~~L~Ls~N~l~~----~iP~----~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N- 558 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT----QLPD----FL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN- 558 (876)
T ss_dssp GCTTCCEEEEESCTTCC----SCCG----GG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-
T ss_pred cCCCCCEEECcCCCCCc----cChH----HH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-
Confidence 78899999998654311 1221 12 4678899999988732554 2222232 3568889988876
Q ss_pred CCChhhHHH--HHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccc-ccccccccc
Q 012255 134 RITGCGILS--VVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRK-LKRLQFEVD 210 (467)
Q Consensus 134 ~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 210 (467)
.++ .++. .+..+++|+.|++.++ .+.. +. .+..+++|+.|+++++. ++ .+......+++ |+.|.+...
T Consensus 559 ~L~--~ip~~~~l~~L~~L~~L~Ls~N-~l~~--lp-~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 559 NLE--EFPASASLQKMVKLGLLDCVHN-KVRH--LE-AFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CCC--BCCCHHHHTTCTTCCEEECTTS-CCCB--CC-CCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSS
T ss_pred cCC--ccCChhhhhcCCCCCEEECCCC-Cccc--ch-hhcCCCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCC
Confidence 444 2333 5567888888888887 4443 22 66777888888887653 32 12222334455 666666554
Q ss_pred cccccccchhh--------------hhh---hhhhhc--ccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccC
Q 012255 211 VNYRYMKVYDR--------------LAV---DRWQRQ--RVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMC 271 (467)
Q Consensus 211 ~~~~~~~~~~~--------------~~~---~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 271 (467)
.-...+..+.. ... ..++.. ....++|+.|+++++. +... -..+...+++|+.|+++++
T Consensus 630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~l-p~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKF-PTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSC-CHHHHHTTCCCSEEECCSC
T ss_pred CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCcc-CHHHHccCCCCCEEECCCC
Confidence 31111111000 000 001100 1134589999999886 3322 2334468999999999987
Q ss_pred cccchhHHHHH------HHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHH-hcCCCCCeEEecccCCCCCcccc
Q 012255 272 VGVRDSDIINM------AQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALA-DNCRMLESVRISFSDGEFPSISS 344 (467)
Q Consensus 272 ~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~~~ 344 (467)
. +.......+ ...+++|+.|++++|... .+.. .+. ..+++|+.|++++ +.
T Consensus 708 ~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~----------~lp~----~l~~~~l~~L~~L~Ls~--------N~ 764 (876)
T 4ecn_A 708 L-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT----------SLSD----DFRATTLPYLSNMDVSY--------NC 764 (876)
T ss_dssp C-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC----------CCCG----GGSTTTCTTCCEEECCS--------SC
T ss_pred c-CCccChHHhccccccccccCCccEEECCCCCCc----------cchH----HhhhccCCCcCEEEeCC--------CC
Confidence 5 431111000 112338999999987521 1221 111 2689999999998 44
Q ss_pred ccHHHHHHHHHhCC-CcEeeccccc-----cccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCC
Q 012255 345 FTLDGILTLIQKCP-VRELSLDYVY-----SFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCL 418 (467)
Q Consensus 345 ~~~~~~~~l~~~~~-L~~L~l~~~~-----~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 418 (467)
++. +..-...++ |+.|+++++. .+.......+.++++|+.|++++|. ++... .. -.++|+.|++++|+
T Consensus 765 L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip-~~--l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 765 FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVD-EK--LTPQLYILDIADNP 838 (876)
T ss_dssp CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCC-SC--CCSSSCEEECCSCT
T ss_pred CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccC-Hh--hcCCCCEEECCCCC
Confidence 443 211223466 9999998743 2232223455679999999999964 33211 11 23799999999965
Q ss_pred CCCccchHhhhc--------CCCCCeeccCCCCCCC
Q 012255 419 GVTDDGLKPLVG--------SHKLDLLAVEDCPQVS 446 (467)
Q Consensus 419 ~it~~~~~~l~~--------~~~L~~L~l~~c~~~~ 446 (467)
++......+.. +..-+...+.+|+.++
T Consensus 839 -l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 839 -NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp -TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred -CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 66555444432 2222334667887553
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=6.1e-16 Score=158.61 Aligned_cols=294 Identities=17% Similarity=0.137 Sum_probs=130.9
Q ss_pred HhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhh
Q 012255 60 CNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCG 139 (467)
Q Consensus 60 ~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 139 (467)
...+++|++|+++.... ..+.+..+ ..+++|++|+++++ .++......++.+++|++|+++++ .++...
T Consensus 45 ~~~l~~L~~L~Ls~n~l-----~~~~~~~~----~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~ 113 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTI-----SKLEPELC----QKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIK 113 (680)
T ss_dssp GGGGTTCSEEECCSSCC-----CCCCTTHH----HHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCC
T ss_pred HhCCCcCcEEECCCCcc-----CccCHHHH----hcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-ccCccC
Confidence 35556677777664422 11222111 34677777777665 444433334556677777777764 232211
Q ss_pred HHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhc-cCcccccccccccccccccccc
Q 012255 140 ILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLG-PCWRKLKRLQFEVDVNYRYMKV 218 (467)
Q Consensus 140 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~ 218 (467)
...+..+++|++|++.++ .+... ....+..+++|++|++.++ .++......+. ...++|+.|.+....-....+.
T Consensus 114 -~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 114 -NNPFVKQKNLITLDLSHN-GLSST-KLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp -SCTTTTCTTCCEEECCSS-CCSCC-CCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred -hhHccccCCCCEEECCCC-ccccc-CchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChh
Confidence 112335667777777766 33221 2223455667777776654 22222222221 1235566666544321000000
Q ss_pred -h----------------hhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcC--CCCcEEEcccCcccchhHH
Q 012255 219 -Y----------------DRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKC--RNLEKIHLDMCVGVRDSDI 279 (467)
Q Consensus 219 -~----------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~--~~L~~L~l~~~~~~~~~~~ 279 (467)
+ .+.....+.. ....++|+.|+++++. ....... .+..+ ++|++|+++++. +.....
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~-~l~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~~~L~~L~Ls~n~-l~~~~~ 265 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCL-ELANTSIRNLSLSNSQ-LSTTSNT-TFLGLKWTNLTMLDLSYNN-LNVVGN 265 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHH-HHTTSCCCEEECTTSC-CCEECTT-TTGGGGGSCCCEEECTTSC-CCEECT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHH-HhhhccccEEEccCCc-ccccChh-HhhccCcCCCCEEECCCCC-cCccCc
Confidence 0 0000000000 0022456666665543 1111111 11222 337777766654 322111
Q ss_pred HHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCC----ccccccHHHHHHHHH
Q 012255 280 INMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFP----SISSFTLDGILTLIQ 355 (467)
Q Consensus 280 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~l~~ 355 (467)
. ....+++|++|+++++. +....-..+ ..+++|+.|++.++..... ....+.+. .+.
T Consensus 266 ~-~~~~l~~L~~L~L~~n~-------------l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~----~~~ 326 (680)
T 1ziw_A 266 D-SFAWLPQLEYFFLEYNN-------------IQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDF----SFQ 326 (680)
T ss_dssp T-TTTTCTTCCEEECCSCC-------------BSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTT----TTT
T ss_pred c-cccCcccccEeeCCCCc-------------cCccChhhh-cCCCCccEEeccchhhhcccccccccccChh----hcc
Confidence 1 12356677777776643 111111111 2567777777765210000 00000000 122
Q ss_pred hCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCC
Q 012255 356 KCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARC 392 (467)
Q Consensus 356 ~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c 392 (467)
.++ |+.|+++++. ++......+..+++|+.|++++|
T Consensus 327 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 327 WLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCC
Confidence 355 8888888863 33322233446778888888765
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=3.2e-15 Score=149.63 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=92.1
Q ss_pred hcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHH-HHHHHHhcCCCCCeEEecccC
Q 012255 258 GKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDE-SLKALADNCRMLESVRISFSD 336 (467)
Q Consensus 258 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~ 336 (467)
..+++|++|+++++. +...... ....+++|++|+++++. ++.. .+......+++|+.|+++++
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~~~l~~L~~L~l~~N- 413 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSVFQ-GCSTLKRLQTLILQRNG-------------LKNFFKVALMTKNMSSLETLDVSLN- 413 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTT-TCCSCSSCCEEECCSSC-------------CCBTTHHHHTTTTCTTCCEEECTTS-
T ss_pred cCCCCceEEECCCCc-cccchhh-hhcccCCCCEEECCCCC-------------cCCcccchhhhcCCCCCCEEECCCC-
Confidence 345667777776654 3321111 12356677777777653 3321 12222235778888888773
Q ss_pred CCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhC-CCCCEEeecCCCCcCHHHHHHhcCCCCCCEEee
Q 012255 337 GEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSA-HYLEILELARCQEISDEGLQLACQFPHLSILRL 414 (467)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l 414 (467)
.++...-.......+ |+.|+++++. ++..... .+ ++|+.|+++++ .++... ..+.++++|+.|++
T Consensus 414 -------~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~l~~~L~~L~L~~N-~l~~ip-~~~~~l~~L~~L~L 480 (562)
T 3a79_B 414 -------SLNSHAYDRTCAWAESILVLNLSSNM-LTGSVFR---CLPPKVKVLDLHNN-RIMSIP-KDVTHLQALQELNV 480 (562)
T ss_dssp -------CCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGGS---SCCTTCSEEECCSS-CCCCCC-TTTTSSCCCSEEEC
T ss_pred -------cCCCccChhhhcCcccCCEEECCCCC-CCcchhh---hhcCcCCEEECCCC-cCcccC-hhhcCCCCCCEEEC
Confidence 222200000112234 8888888763 4432221 23 68999999885 555321 22337889999999
Q ss_pred cCCCCCCccchHhhhcCCCCCeeccCCCCCCCH
Q 012255 415 RKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 415 ~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~ 447 (467)
+++ .++......+..+++|+.|++++++...+
T Consensus 481 ~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 481 ASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CSS-CCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCC-CCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 994 57754444456689999999999985444
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=3.1e-15 Score=142.62 Aligned_cols=298 Identities=15% Similarity=0.081 Sum_probs=192.3
Q ss_pred HHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCCh
Q 012255 58 SLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITG 137 (467)
Q Consensus 58 ~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 137 (467)
.+...+++|++|+++..... .+... .+ ..+++|++|+++++ .++......+..+++|++|+++++ .++.
T Consensus 63 ~~~~~l~~L~~L~L~~n~i~-----~~~~~---~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 131 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQIE-----EIDTY---AF-AYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSS 131 (390)
T ss_dssp HHHHHCCCCSEEECTTSCCC-----EECTT---TT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred hHhcccccCcEEECCCCccc-----ccChh---hc-cCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCC-ccCc
Confidence 45688999999999865431 12111 12 56899999999988 566654455678999999999986 4443
Q ss_pred hhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccccccccccccccccccc
Q 012255 138 CGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMK 217 (467)
Q Consensus 138 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 217 (467)
.. ..++..+++|++|++.++ .+... ....+..+++|+.|++.++ .++...+ ..+++|+.+.+....-..
T Consensus 132 l~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~l~~L~~L~l~~n~l~~--- 200 (390)
T 3o6n_A 132 LP-RGIFHNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQNLQLSSN-RLTHVDL----SLIPSLFHANVSYNLLST--- 200 (390)
T ss_dssp CC-TTTTTTCTTCCEEECCSS-CCCBC-CTTTTSSCTTCCEEECCSS-CCSBCCG----GGCTTCSEEECCSSCCSE---
T ss_pred CC-HHHhcCCCCCcEEECCCC-ccCcc-ChhhccCCCCCCEEECCCC-cCCcccc----ccccccceeecccccccc---
Confidence 22 123457899999999988 45433 2345778899999999876 3444322 335677777665432100
Q ss_pred chhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccC
Q 012255 218 VYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVP 297 (467)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (467)
....++|+.|+++++. +.... ....++|+.|+++++. +++. .....+++|++|+++++
T Consensus 201 -------------~~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 201 -------------LAIPIAVEELDASHNS-INVVR----GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp -------------EECCSSCSEEECCSSC-CCEEE----CCCCSSCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS
T ss_pred -------------cCCCCcceEEECCCCe-eeecc----ccccccccEEECCCCC-Cccc---HHHcCCCCccEEECCCC
Confidence 1244688899988765 22211 1235789999998875 4433 23457889999999886
Q ss_pred CCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHH
Q 012255 298 SDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGME 376 (467)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~ 376 (467)
. ++......+ ..+++|+.|++++ +.++... ......+ |+.|+++++. ++.. ..
T Consensus 259 ~-------------l~~~~~~~~-~~l~~L~~L~L~~--------n~l~~~~--~~~~~l~~L~~L~L~~n~-l~~~-~~ 312 (390)
T 3o6n_A 259 E-------------LEKIMYHPF-VKMQRLERLYISN--------NRLVALN--LYGQPIPTLKVLDLSHNH-LLHV-ER 312 (390)
T ss_dssp C-------------CCEEESGGG-TTCSSCCEEECCS--------SCCCEEE--CSSSCCTTCCEEECCSSC-CCCC-GG
T ss_pred c-------------CCCcChhHc-cccccCCEEECCC--------CcCcccC--cccCCCCCCCEEECCCCc-ceec-Cc
Confidence 4 322211122 2578999999987 3333311 1112345 9999999873 3321 11
Q ss_pred HHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhc
Q 012255 377 ALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVG 430 (467)
Q Consensus 377 ~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~ 430 (467)
.+..+++|+.|+++++ .+++.. +..+++|+.|+++++ .++......+..
T Consensus 313 ~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~ 361 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFR 361 (390)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTT
T ss_pred cccccCcCCEEECCCC-ccceeC---chhhccCCEEEcCCC-CccchhHHHHHH
Confidence 2346789999999985 455432 557899999999995 477766655543
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=145.85 Aligned_cols=210 Identities=15% Similarity=0.076 Sum_probs=135.0
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
++|++|++++... ..+... .+ ..+++|++|+++++ .++......+..+++|++|+++++ .++... ..
T Consensus 21 ~~L~~L~Ls~n~i-----~~~~~~---~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYI-----SELWTS---DI-LSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKIS--CH 87 (520)
T ss_dssp TTCSEEECCSSCC-----CCCCHH---HH-TTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEE--CC
T ss_pred ccccEEECCCCcc-----cccChh---hc-cccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecC--cc
Confidence 7999999986643 223322 23 57899999999998 677655566788999999999986 555322 22
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccc--cccccccccccccccchhh
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKL--KRLQFEVDVNYRYMKVYDR 221 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~~~~~~~~~~ 221 (467)
.+++|++|+++++ .+........++.+++|++|+++++ .++...+ ..+++| +.|.+....-.. ....+
T Consensus 88 --~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~L~L~~L~l~~n~l~~--~~~~~ 157 (520)
T 2z7x_B 88 --PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT-HLEKSSV----LPIAHLNISKVLLVLGETYG--EKEDP 157 (520)
T ss_dssp --CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES-SCCGGGG----GGGTTSCEEEEEEEECTTTT--SSCCT
T ss_pred --ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCc-ccchhhc----cccccceeeEEEeecccccc--ccccc
Confidence 7899999999998 5544324457888999999999886 4554322 334556 777776543100 00011
Q ss_pred hhhhh------------------hhh-cccCCCCcceeeccccCcc-----CchhHHHHHhcCCCCcEEEcccCcccchh
Q 012255 222 LAVDR------------------WQR-QRVPCENMVELSLKNCIIS-----PGRGLACVLGKCRNLEKIHLDMCVGVRDS 277 (467)
Q Consensus 222 ~~~~~------------------~~~-~~~~~~~L~~L~l~~~~~~-----~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 277 (467)
..+.. ++. ....+++|+.|+++++... -...+. .+..+++|+.|.+.++. +...
T Consensus 158 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-l~~~ 235 (520)
T 2z7x_B 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE-TTWN 235 (520)
T ss_dssp TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE-EEHH
T ss_pred ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc-cCHH
Confidence 11111 111 1335788888888875300 011122 34778999999998875 5555
Q ss_pred HHHHHHH--hCCCCCeeeeccCC
Q 012255 278 DIINMAQ--TSSKLRSISLRVPS 298 (467)
Q Consensus 278 ~~~~~~~--~~~~L~~L~l~~~~ 298 (467)
.+..+.. ..++|++|++++|.
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEE
T ss_pred HHHHHHHHhhhCcccEEEeeccc
Confidence 5444332 35799999999875
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=1.8e-15 Score=153.21 Aligned_cols=332 Identities=14% Similarity=0.114 Sum_probs=191.3
Q ss_pred hCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCCh-HhHHHHhc------CCCCceeeccCCCC
Q 012255 62 RFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITD-VGLCYLAS------CLNLSTLKLKFTTR 134 (467)
Q Consensus 62 ~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~------~~~L~~L~l~~~~~ 134 (467)
.+++|++|+++...... .+.+ .+ ..+++|++|+++++..++. .....++. +++|++|+++++ .
T Consensus 247 ~l~~L~~L~L~~n~l~~----~~p~----~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~ 316 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT----KLPT----FL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-N 316 (636)
T ss_dssp GCTTCCEEEEECCTTCS----SCCT----TT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-C
T ss_pred ccCCCCEEEecCCcCCc----cChH----HH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-c
Confidence 78899999998654321 1111 11 4678899999988743665 33334443 488999999876 4
Q ss_pred CChhhHHH--HHhcCCCCcEEeccCCcccC-chHHHHHhcccccccccccccCCCCChhhHHhhccCccc-ccccccccc
Q 012255 135 ITGCGILS--VVVGCKNLTVLHLIRCLNVN-SVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRK-LKRLQFEVD 210 (467)
Q Consensus 135 ~~~~~l~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 210 (467)
++ .++. .+..+++|++|++.++ .+. .. . .+..+++|+.|+++++. ++ .+......+++ |+.|.+...
T Consensus 317 l~--~ip~~~~l~~l~~L~~L~L~~N-~l~g~i--p-~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 317 LK--TFPVETSLQKMKKLGMLECLYN-QLEGKL--P-AFGSEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CS--SCCCHHHHTTCTTCCEEECCSC-CCEEEC--C-CCEEEEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSS
T ss_pred CC--ccCchhhhccCCCCCEEeCcCC-cCccch--h-hhCCCCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCC
Confidence 44 2333 5668888999988887 443 32 2 56667777777776652 22 11111233444 555555443
Q ss_pred cccccccchh--------------hhhhhhhhhccc-------CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcc
Q 012255 211 VNYRYMKVYD--------------RLAVDRWQRQRV-------PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLD 269 (467)
Q Consensus 211 ~~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~ 269 (467)
.-...+..+. .......+.... .+++|+.|+++++. +... -..+...+++|++|+++
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~l-p~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF-PKELFSTGSPLSSINLM 465 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSC-CTHHHHTTCCCSEEECC
T ss_pred cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcC-CHHHHccCCCCCEEECC
Confidence 2111111000 000011111111 45699999999876 3322 22344678999999999
Q ss_pred cCcccchhHHHHHHHh-------CCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHH-hcCCCCCeEEecccCCCCCc
Q 012255 270 MCVGVRDSDIINMAQT-------SSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALA-DNCRMLESVRISFSDGEFPS 341 (467)
Q Consensus 270 ~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~ 341 (467)
++. ++.... ..... +++|++|+++++. ++... ..+. ..+++|+.|++++
T Consensus 466 ~N~-l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~lp-~~~~~~~l~~L~~L~Ls~------- 522 (636)
T 4eco_A 466 GNM-LTEIPK-NSLKDENENFKNTYLLTSIDLRFNK-------------LTKLS-DDFRATTLPYLVGIDLSY------- 522 (636)
T ss_dssp SSC-CSBCCS-SSSEETTEECTTGGGCCEEECCSSC-------------CCBCC-GGGSTTTCTTCCEEECCS-------
T ss_pred CCC-CCCcCH-HHhccccccccccCCccEEECcCCc-------------CCccC-hhhhhccCCCcCEEECCC-------
Confidence 875 431111 11111 2389999999875 33111 1121 2689999999998
Q ss_pred cccccHHHHHHHHHhCC-CcEeeccccc-----cccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeec
Q 012255 342 ISSFTLDGILTLIQKCP-VRELSLDYVY-----SFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLR 415 (467)
Q Consensus 342 ~~~~~~~~~~~l~~~~~-L~~L~l~~~~-----~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~ 415 (467)
+.++. +..-...++ |+.|+++++. .+.......+.++++|+.|++++|. ++.... .+ .++|+.|+++
T Consensus 523 -N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~-~~--~~~L~~L~Ls 595 (636)
T 4eco_A 523 -NSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNE-KI--TPNISVLDIK 595 (636)
T ss_dssp -SCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCS-CC--CTTCCEEECC
T ss_pred -CCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCH-hH--hCcCCEEECc
Confidence 44443 211223466 9999996532 2222223345679999999999964 443211 12 3899999999
Q ss_pred CCCCCCccchHhhhc--------CCCCCeeccCCCCCC
Q 012255 416 KCLGVTDDGLKPLVG--------SHKLDLLAVEDCPQV 445 (467)
Q Consensus 416 ~c~~it~~~~~~l~~--------~~~L~~L~l~~c~~~ 445 (467)
+++ ++...+..+.. ....+..++.+|+.+
T Consensus 596 ~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 596 DNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp SCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CCC-CccccHHhcchhhhcccceeecCCccccCCCccc
Confidence 965 66544333321 223455677888754
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=1.7e-14 Score=139.80 Aligned_cols=275 Identities=14% Similarity=0.075 Sum_probs=185.4
Q ss_pred hCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccc
Q 012255 95 SCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLE 174 (467)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 174 (467)
.+++|++|+++++ .+++. ..+..+++|++|+++++ .++... +..+++|++|++.++ .+... .++.++
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~----~~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDM--TGIEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNL----DVTPLT 106 (457)
T ss_dssp HHTTCCEEECCSS-CCCCC--TTGGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCC----CCTTCT
T ss_pred HcCCCCEEEccCC-CcccC--hhhcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCcee----ecCCCC
Confidence 4699999999998 66653 35778999999999987 455433 457899999999998 56554 277889
Q ss_pred cccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHH
Q 012255 175 RLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLA 254 (467)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 254 (467)
+|++|+++++ .++... ...+++|+.|.+....-.. ++ ...+++|+.|+++++.......
T Consensus 107 ~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~------------l~--l~~l~~L~~L~l~~n~~~~~~~-- 165 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTE------------ID--VSHNTQLTELDCHLNKKITKLD-- 165 (457)
T ss_dssp TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSC------------CC--CTTCTTCCEEECTTCSCCCCCC--
T ss_pred cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCccce------------ec--cccCCcCCEEECCCCCcccccc--
Confidence 9999999887 444432 4566788888876543110 11 4577899999999885444432
Q ss_pred HHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 012255 255 CVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISF 334 (467)
Q Consensus 255 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 334 (467)
+..+++|++|+++++. ++... ...+++|++|.++++. ++... + ..+++|+.|++++
T Consensus 166 --~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-------------l~~~~---l-~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 166 --VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-------------ITKLD---L-NQNIQLTFLDCSS 221 (457)
T ss_dssp --CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSC-------------CSCCC---C-TTCTTCSEEECCS
T ss_pred --cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCCc-------------CCeec---c-ccCCCCCEEECcC
Confidence 4678999999999875 54432 3478999999999865 22221 2 2689999999988
Q ss_pred cCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCC----------EEeecCCCCcCHHHHHHh
Q 012255 335 SDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLE----------ILELARCQEISDEGLQLA 403 (467)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~----------~L~l~~c~~it~~~~~~l 403 (467)
+.+++.. ...++ |+.|+++++ .++... +..+++|+ .|++++|....... +
T Consensus 222 --------N~l~~ip----~~~l~~L~~L~l~~N-~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~ 282 (457)
T 3bz5_A 222 --------NKLTEID----VTPLTQLTYFDCSVN-PLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---A 282 (457)
T ss_dssp --------SCCSCCC----CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---C
T ss_pred --------CcccccC----ccccCCCCEEEeeCC-cCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc---c
Confidence 4555422 33456 999999986 333322 22355554 55555554333221 3
Q ss_pred cCCCCCCEEeecCCCCCCccc-----hH--hhhcCCCCCeeccCCCCCCCH
Q 012255 404 CQFPHLSILRLRKCLGVTDDG-----LK--PLVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 404 ~~~~~L~~L~l~~c~~it~~~-----~~--~l~~~~~L~~L~l~~c~~~~~ 447 (467)
.++++|+.|++++|..+.... +. .+..+++|+.|+++++. ++.
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~ 332 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTE 332 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSC
T ss_pred cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccc
Confidence 467999999999986443211 11 13347888888888885 554
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=1.6e-14 Score=145.31 Aligned_cols=292 Identities=14% Similarity=0.047 Sum_probs=170.3
Q ss_pred HHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCCh
Q 012255 58 SLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITG 137 (467)
Q Consensus 58 ~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 137 (467)
.+...+++|++|+++..... .+... .+ ..+++|++|+++++ .++......++.+++|++|+++++ .++.
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~-----~~~~~---~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 137 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIE-----EIDTY---AF-AYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSS 137 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCC-----EECTT---TT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred HHHccCCCCcEEECCCCCCC-----CCChH---Hh-cCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC-CCCC
Confidence 55788999999999865431 12111 12 46899999999988 566655555678999999999987 4443
Q ss_pred hhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccccccccccccccccccc
Q 012255 138 CGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMK 217 (467)
Q Consensus 138 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 217 (467)
.. ..++..+++|+.|+++++ .+... ....+..+++|+.|+++++ .++... ...+++|+.+.+....-..
T Consensus 138 l~-~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~l~~--- 206 (597)
T 3oja_B 138 LP-RGIFHNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNLLST--- 206 (597)
T ss_dssp CC-TTTTTTCTTCCEEECCSS-CCCBC-CTTTTTTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSCCSE---
T ss_pred CC-HHHhccCCCCCEEEeeCC-cCCCC-ChhhhhcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCcccc---
Confidence 22 223458899999999998 55443 3345778899999999876 344332 2334667777665432100
Q ss_pred chhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccC
Q 012255 218 VYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVP 297 (467)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (467)
....++|+.|+++++. +.... ....++|+.|.++++. +++. .....+++|+.|+++++
T Consensus 207 -------------l~~~~~L~~L~ls~n~-l~~~~----~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 207 -------------LAIPIAVEELDASHNS-INVVR----GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp -------------EECCTTCSEEECCSSC-CCEEE----CSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS
T ss_pred -------------ccCCchhheeeccCCc-ccccc----cccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCC
Confidence 1234567777776654 22111 0123567777777664 3332 22345677777777765
Q ss_pred CCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHH
Q 012255 298 SDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGME 376 (467)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~ 376 (467)
. ++......+. .+++|+.|++++ +.++... ......+ |+.|+++++.. +. ...
T Consensus 265 ~-------------l~~~~~~~~~-~l~~L~~L~Ls~--------N~l~~l~--~~~~~l~~L~~L~Ls~N~l-~~-i~~ 318 (597)
T 3oja_B 265 E-------------LEKIMYHPFV-KMQRLERLYISN--------NRLVALN--LYGQPIPTLKVLDLSHNHL-LH-VER 318 (597)
T ss_dssp C-------------CCEEESGGGT-TCSSCCEEECTT--------SCCCEEE--CSSSCCTTCCEEECCSSCC-CC-CGG
T ss_pred c-------------cCCCCHHHhc-CccCCCEEECCC--------CCCCCCC--cccccCCCCcEEECCCCCC-Cc-cCc
Confidence 3 2221111122 466777777766 2332210 1112234 77777777532 21 111
Q ss_pred HHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccc
Q 012255 377 ALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDG 424 (467)
Q Consensus 377 ~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~ 424 (467)
.+..+++|+.|++++|. ++.. .+..+++|+.|++++++ ++...
T Consensus 319 ~~~~l~~L~~L~L~~N~-l~~~---~~~~~~~L~~L~l~~N~-~~~~~ 361 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNS-IVTL---KLSTHHTLKNLTLSHND-WDCNS 361 (597)
T ss_dssp GHHHHTTCSEEECCSSC-CCCC---CCCTTCCCSEEECCSSC-EEHHH
T ss_pred ccccCCCCCEEECCCCC-CCCc---ChhhcCCCCEEEeeCCC-CCChh
Confidence 23456777777777753 3332 14467777777777743 55443
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=132.67 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++|++|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++ .+... ....+..+++|
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIE-EDSFSSLGSLEHLDLSYN-YLSNL-SSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCSSC-CHHHHTTCTTC
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccC-HhhcCCCCCCCEEECCCC-cCCcC-CHhHhCCCccC
Confidence 46666666665 454433334456666666666654 333221 122335666666666665 33332 22335556666
Q ss_pred cccccccC
Q 012255 177 EDLLIKNC 184 (467)
Q Consensus 177 ~~L~l~~~ 184 (467)
++|+++++
T Consensus 127 ~~L~L~~n 134 (353)
T 2z80_A 127 TFLNLLGN 134 (353)
T ss_dssp SEEECTTC
T ss_pred CEEECCCC
Confidence 66666554
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.49 E-value=9.9e-14 Score=130.28 Aligned_cols=182 Identities=16% Similarity=0.116 Sum_probs=111.9
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
++|++|+++..... .+... .+ ..+++|++|+++++ .++......+..+++|++|+++++ .++... ...
T Consensus 52 ~~L~~L~l~~n~i~-----~~~~~---~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-----YISNS---DL-QRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLS-SSW 119 (353)
T ss_dssp TTCCEEECTTSCCC-----EECTT---TT-TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCC-HHH
T ss_pred ccCcEEECCCCcCc-----ccCHH---Hh-ccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCC-HhH
Confidence 58999999865431 12221 12 56899999999988 677654456778999999999986 455433 234
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhh
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLA 223 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 223 (467)
+..+++|++|++.++ .+........+..+++|++|++.++..++......
T Consensus 120 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----------------------------- 169 (353)
T 2z80_A 120 FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD----------------------------- 169 (353)
T ss_dssp HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-----------------------------
T ss_pred hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHH-----------------------------
Confidence 568999999999988 44432111245667888888887653333211000
Q ss_pred hhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCC
Q 012255 224 VDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPS 298 (467)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (467)
+..+++|+.|+++++. +.... ...+..+++|++|+++++. +.... ..+...+++|++|+++++.
T Consensus 170 -------~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 170 -------FAGLTFLEELEIDASD-LQSYE-PKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -------TTTCCEEEEEEEEETT-CCEEC-TTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCB
T ss_pred -------ccCCCCCCEEECCCCC-cCccC-HHHHhccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCCc
Confidence 2355677777777654 22211 1223556777777777664 33221 2233456777777777654
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=1.2e-15 Score=159.86 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=48.0
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
|+.|+++++ .++......+..+++|+.|+++++ .++......+.++++|+.|+++++ .++......+..+++|+.|+
T Consensus 292 L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 292 LKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCEEEEESC-CCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEE
T ss_pred CCEEECCCC-cCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEE
Confidence 666666664 233222223345667777777764 344332334556777777777774 46555544455577888888
Q ss_pred cCCCC
Q 012255 439 VEDCP 443 (467)
Q Consensus 439 l~~c~ 443 (467)
+++|.
T Consensus 369 Ls~N~ 373 (844)
T 3j0a_A 369 LRDNA 373 (844)
T ss_dssp EETCC
T ss_pred CCCCC
Confidence 87775
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=3.6e-15 Score=156.16 Aligned_cols=126 Identities=12% Similarity=0.073 Sum_probs=78.8
Q ss_pred CCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeecc
Q 012255 287 SKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLD 365 (467)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~ 365 (467)
++|+.|+++++. +..... .....+++|+.|++++ +.++...-. .+..++ |+.|+++
T Consensus 266 ~~L~~L~Ls~n~-------------l~~~~~-~~~~~l~~L~~L~L~~--------n~i~~~~~~-~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 266 SSVRHLDLSHGF-------------VFSLNS-RVFETLKDLKVLNLAY--------NKINKIADE-AFYGLDNLQVLNLS 322 (844)
T ss_dssp SCCCEEECTTCC-------------CCEECS-CCSSSCCCCCEEEEES--------CCCCEECTT-TTTTCSSCCEEEEE
T ss_pred CCccEEECCCCc-------------ccccCh-hhhhcCCCCCEEECCC--------CcCCCCChH-HhcCCCCCCEEECC
Confidence 688999988764 221110 1112578999999988 333322111 123455 9999999
Q ss_pred ccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 366 YVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
++. ++......+..+++|+.|+++++ .++......+.++++|+.|+++++ .++.. ..+++|+.|.+++|.
T Consensus 323 ~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i-----~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 323 YNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTI-----HFIPSIPDIFLSGNK 392 (844)
T ss_dssp SCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCC-----SSCCSCSEEEEESCC
T ss_pred CCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCcc-----cCCCCcchhccCCCC
Confidence 863 33322234457899999999985 555544445667999999999995 46542 125566666655553
No 51
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=9.8e-14 Score=113.43 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=83.3
Q ss_pred CCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhC----CCCCEEeecCCCCcCHHH
Q 012255 325 RMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSA----HYLEILELARCQEISDEG 399 (467)
Q Consensus 325 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~c~~it~~~ 399 (467)
.+|+.|++++| .+++.++..+ ..|+ |++|++++|..++|.++..+... ++|++|+|++|..+||.+
T Consensus 61 ~~L~~LDLs~~--------~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDS--------CIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESC--------CCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCC--------CccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 36888888883 4788887776 4677 88888888889999999988864 589999999999999999
Q ss_pred HHHhcCCCCCCEEeecCCCCCCccch--Hhhhc-CCCCC
Q 012255 400 LQLACQFPHLSILRLRKCLGVTDDGL--KPLVG-SHKLD 435 (467)
Q Consensus 400 ~~~l~~~~~L~~L~l~~c~~it~~~~--~~l~~-~~~L~ 435 (467)
+..+.++++|+.|++++|+.||+.++ ..+.. .|+++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 99999999999999999999998763 33433 77754
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=2.8e-13 Score=135.49 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=87.7
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
+++++|++++... ..+....+ ..+++|++|+++++ .++......+..+++|++|+++++ .++... ..
T Consensus 52 ~~L~~L~Ls~N~i-----~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSI-----SELRMPDI----SFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN-RLQNIS--CC 118 (562)
T ss_dssp TTCCEEECCSSCC-----CCCCGGGT----TTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-CCCEEC--SC
T ss_pred CCcCEEECCCCCc-----cccChhhh----ccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-cCCccC--cc
Confidence 7999999986643 22332222 56899999999988 677655556778999999999986 455322 22
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccc--cccccccc
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKL--KRLQFEVD 210 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~ 210 (467)
.+++|++|+++++ .+........+..+++|++|+++++ .+....+. .++++ +.|.+...
T Consensus 119 --~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~~----~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 119 --PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDLL----PVAHLHLSCILLDLV 179 (562)
T ss_dssp --CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS-BCCTTTTG----GGTTSCEEEEEEEES
T ss_pred --ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCC-ccccCchh----hhhhceeeEEEeecc
Confidence 7899999999998 5554323356888999999999875 44443332 23444 77776553
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=132.78 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=33.2
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
.+++|+.|+++++ .+++.....+.++++|+.|+++++ .++......+..+++|+.|++++++
T Consensus 229 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 4555666666552 444433344445566666666663 3554444444445666666666555
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.40 E-value=2.5e-14 Score=145.41 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=60.6
Q ss_pred hCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcC-CC
Q 012255 356 KCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGS-HK 433 (467)
Q Consensus 356 ~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~-~~ 433 (467)
..+ |+.|+++++ .++......+.++++|+.|+++++ .++......+.++++|+.|++++ +.++......+..+ ++
T Consensus 492 ~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~ 568 (635)
T 4g8a_A 492 ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSS 568 (635)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTT
T ss_pred hccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCc
Confidence 344 888888886 344333334556788888888884 55554445566788888888888 45777666666664 67
Q ss_pred CCeeccCCCCCCC
Q 012255 434 LDLLAVEDCPQVS 446 (467)
Q Consensus 434 L~~L~l~~c~~~~ 446 (467)
|+.|+++++|..-
T Consensus 569 L~~L~L~~Np~~C 581 (635)
T 4g8a_A 569 LAFLNLTQNDFAC 581 (635)
T ss_dssp CCEEECTTCCBCC
T ss_pred CCEEEeeCCCCcc
Confidence 8999988877443
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=9.4e-14 Score=129.15 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=36.6
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhc------CC
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVG------SH 432 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~------~~ 432 (467)
|+.|+++++ .++......+..+++|+.|++++| .++.. ...+..+++|+.|+++++ .++......+.. .+
T Consensus 218 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 218 LAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSC
T ss_pred CCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCccC-ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccc
Confidence 555555443 222222222334556666666553 33311 112334556666666653 355444333321 24
Q ss_pred CCCeeccCCCC
Q 012255 433 KLDLLAVEDCP 443 (467)
Q Consensus 433 ~L~~L~l~~c~ 443 (467)
.++.|++.+++
T Consensus 294 ~l~~l~l~~N~ 304 (330)
T 1xku_A 294 SYSGVSLFSNP 304 (330)
T ss_dssp CCSEEECCSSS
T ss_pred cccceEeecCc
Confidence 55556666555
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.40 E-value=2e-13 Score=132.60 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=41.5
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQ 444 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~ 444 (467)
+..+++|+.|+++++ .++......+.++++|+.|+++++ .++......+..+++|+.|++++++.
T Consensus 238 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp GTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 345667777777763 455444445566777777777774 46655555455577777777777663
No 57
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=6.6e-12 Score=117.94 Aligned_cols=188 Identities=22% Similarity=0.306 Sum_probs=137.2
Q ss_pred CCCcceeeccccCccCchhHHHH---Hh-cCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCC
Q 012255 234 CENMVELSLKNCIISPGRGLACV---LG-KCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNP 309 (467)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~l~~l---~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 309 (467)
.++|+.|+++++. +++.....+ +. .+++|++|+++++. +++.++..+...+++|++|++++|
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n------------ 136 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN------------ 136 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS------------
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC------------
Confidence 4689999999886 555443333 22 34689999999886 888888887777889999999986
Q ss_pred CCCCHHHHHHHHh----cCCCCCeEEecccCCCCCccccccHHHHHHHH---HhCC-CcEeeccccccccHHHHHHHH--
Q 012255 310 LRLTDESLKALAD----NCRMLESVRISFSDGEFPSISSFTLDGILTLI---QKCP-VRELSLDYVYSFNDVGMEALC-- 379 (467)
Q Consensus 310 ~~~~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~---~~~~-L~~L~l~~~~~~~~~~~~~l~-- 379 (467)
.+++.+...+.. .+++|++|++++ +.+++.+...+. ..++ |++|+++++ .+++.++..+.
T Consensus 137 -~l~~~~~~~L~~~L~~~~~~L~~L~Ls~--------n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~ 206 (372)
T 3un9_A 137 -SLGPEACKDLRDLLLHDQCQITTLRLSN--------NPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQ 206 (372)
T ss_dssp -CCCHHHHHHHHHHHHSTTCCCCEEECCS--------SCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCccceeeCCC--------CCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHH
Confidence 488887777653 368899999998 578887776664 3455 999999996 47887765554
Q ss_pred --hCCCCCEEeecCCCCcCHHHHHHhc----CCCCCCEEeecCCCCCCccchHhhhc--CCC---CCeec--cCCCCCCC
Q 012255 380 --SAHYLEILELARCQEISDEGLQLAC----QFPHLSILRLRKCLGVTDDGLKPLVG--SHK---LDLLA--VEDCPQVS 446 (467)
Q Consensus 380 --~~~~L~~L~l~~c~~it~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~~l~~--~~~---L~~L~--l~~c~~~~ 446 (467)
..++|+.|++++| .+++.+...++ .+++|+.|++++| .|++.++..+.. .+. |+.+. +.++. ++
T Consensus 207 L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~-~~ 283 (372)
T 3un9_A 207 LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA-VS 283 (372)
T ss_dssp GGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC-----CH
T ss_pred HhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCc-cC
Confidence 5688999999985 78888776654 4788999999995 599988888876 222 66666 55554 55
Q ss_pred HH
Q 012255 447 ER 448 (467)
Q Consensus 447 ~~ 448 (467)
++
T Consensus 284 ~~ 285 (372)
T 3un9_A 284 EY 285 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=2.1e-14 Score=132.09 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=37.0
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcC-CCCCeeccCCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGS-HKLDLLAVEDCP 443 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~-~~L~~L~l~~c~ 443 (467)
.+++|+.|+++++ .+++.....+.++++|+.|+++++ .++......+..+ ++|+.|++++++
T Consensus 197 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 197 SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 4566666666663 343333333456677777777774 4666555555554 367777777776
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.38 E-value=8.1e-13 Score=121.97 Aligned_cols=154 Identities=18% Similarity=0.114 Sum_probs=84.2
Q ss_pred HHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHH
Q 012255 89 LLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLE 168 (467)
Q Consensus 89 l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 168 (467)
+..+...+++|++|+++++ .++......+..+++|++|+++++ .++... . +..+++|++|+++++ .+..
T Consensus 26 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n-~l~~----- 94 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNN-YVQE----- 94 (317)
T ss_dssp HHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSS-EEEE-----
T ss_pred HHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCC-cccc-----
Confidence 4445556678888888776 566655556677788888888775 333211 1 446777888887776 3332
Q ss_pred HhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCcc
Q 012255 169 YLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIIS 248 (467)
Q Consensus 169 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 248 (467)
+...++|+.|+++++ .++... ...+++|+.|+++++. +
T Consensus 95 -l~~~~~L~~L~l~~n-~l~~~~---------------------------------------~~~~~~L~~L~l~~N~-l 132 (317)
T 3o53_A 95 -LLVGPSIETLHAANN-NISRVS---------------------------------------CSRGQGKKNIYLANNK-I 132 (317)
T ss_dssp -EEECTTCCEEECCSS-CCSEEE---------------------------------------ECCCSSCEEEECCSSC-C
T ss_pred -ccCCCCcCEEECCCC-ccCCcC---------------------------------------ccccCCCCEEECCCCC-C
Confidence 223466666666554 121100 1234567777776654 2
Q ss_pred CchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccC
Q 012255 249 PGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVP 297 (467)
Q Consensus 249 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (467)
.... ...+..+++|++|+++++. +.......+...+++|++|+++++
T Consensus 133 ~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 133 TMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CSGG-GBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCcc-chhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC
Confidence 2211 1112445667777776654 433322233334566666666654
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=5.7e-14 Score=130.72 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=33.1
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcC------CCCCCEEeecCCCCCC--ccchHhhhcCCCCCeeccCCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQ------FPHLSILRLRKCLGVT--DDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~------~~~L~~L~l~~c~~it--~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+..+++|+.|+++++ .+++.....+.. .+.|+.|++.+++ ++ ......+..+++|+.++++++.
T Consensus 260 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 345677777777763 455444333332 3557777777744 44 2223334446677777776654
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.36 E-value=5.1e-14 Score=143.14 Aligned_cols=186 Identities=11% Similarity=0.020 Sum_probs=119.5
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
.+++|+.|++++...............+.+|+.+++..+..... ......+++|+.+.+..+.... .
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~----------~ 435 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQ----------M 435 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE---CSCCTTCTTCCEEECTTSEEES----------T
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccc---cccccccccccchhhhhccccc----------c
Confidence 46789999998765322222223345688999999887642111 1112367889999987654211 0
Q ss_pred CHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecC
Q 012255 313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELAR 391 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 391 (467)
.. ......+++++.++++.+ .+.... .......+ ++.|+++++..........+..+++|+.|++++
T Consensus 436 ~~---~~~~~~l~~l~~l~ls~n--------~l~~~~-~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 436 SE---FSVFLSLRNLIYLDISHT--------HTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp TS---SCTTTTCTTCCEEECTTS--------CCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred cc---cccccccccccccccccc--------cccccc-ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 00 011225788999998773 222111 11123344 999999987543322222344689999999999
Q ss_pred CCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 392 CQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 392 c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
| .++......+.++++|+.|+++++ +++......+..+++|+.|+++++. ++
T Consensus 504 N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~ 555 (635)
T 4g8a_A 504 C-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IM 555 (635)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC-CC
T ss_pred C-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc-CC
Confidence 6 666655566778999999999994 6887777777779999999999995 44
No 62
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.7e-11 Score=115.14 Aligned_cols=170 Identities=19% Similarity=0.190 Sum_probs=119.1
Q ss_pred CCCCcEEEcccCcccchhHHHHHHHh----CCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEeccc
Q 012255 260 CRNLEKIHLDMCVGVRDSDIINMAQT----SSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFS 335 (467)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 335 (467)
.++|++|+++++. ++..+...+... +++|++|++++| .+++.+...+...+++|+.|++++
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-------------~l~~~~~~~l~~~L~~L~~L~Ls~- 135 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-------------QLDPAGLRTLLPVFLRARKLGLQL- 135 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-------------CCCHHHHHHTHHHHHTEEEEECCS-
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-------------CCCHHHHHHHHHHHHhccHhhcCC-
Confidence 4668888888775 666555554332 257888888875 477777777776677888888877
Q ss_pred CCCCCccccccHHHHHHHHHh----CC-CcEeeccccccccHHHHHHHH----hCCCCCEEeecCCCCcCHHHHHHh---
Q 012255 336 DGEFPSISSFTLDGILTLIQK----CP-VRELSLDYVYSFNDVGMEALC----SAHYLEILELARCQEISDEGLQLA--- 403 (467)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~----~~-L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~~l--- 403 (467)
+.+++.+...+... ++ |++|++++| .+++.+...+. ..++|++|++++| .+++.++..+
T Consensus 136 -------n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~ 206 (372)
T 3un9_A 136 -------NSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQ 206 (372)
T ss_dssp -------SCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHH
Confidence 57777776666432 33 888888886 56766665553 4778888888874 5777765544
Q ss_pred -cCCCCCCEEeecCCCCCCccchHhhhc----CCCCCeeccCCCCCCCHHHHHHHHh
Q 012255 404 -CQFPHLSILRLRKCLGVTDDGLKPLVG----SHKLDLLAVEDCPQVSERGVQGAAR 455 (467)
Q Consensus 404 -~~~~~L~~L~l~~c~~it~~~~~~l~~----~~~L~~L~l~~c~~~~~~~~~~l~~ 455 (467)
...++|+.|++++| .|++.+...++. +++|+.|++++|+ +++.++..+++
T Consensus 207 L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~ 261 (372)
T 3un9_A 207 LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRD 261 (372)
T ss_dssp GGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHH
T ss_pred HhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHH
Confidence 35677888888885 488777666654 6788888888886 88888877776
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=8.8e-13 Score=122.55 Aligned_cols=269 Identities=17% Similarity=0.118 Sum_probs=157.3
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++++.|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++ .+... ... ..++|
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~l--~~~--~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKIS-PGAFAPLVKLERLYLSKN-QLKEL--PEK--MPKTL 123 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSS-CCSBC--CSS--CCTTC
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeC-HHHhcCCCCCCEEECCCC-cCCcc--Chh--hcccc
Confidence 67777777776 455543334556777777777765 333221 122346677777777766 33321 001 12456
Q ss_pred cccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHH
Q 012255 177 EDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACV 256 (467)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l 256 (467)
++|++.++ .++... +.. +..+++|+.|+++++...........
T Consensus 124 ~~L~l~~n-~l~~~~-----------------------------~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 124 QELRVHEN-EITKVR-----------------------------KSV-------FNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp CEEECCSS-CCCBBC-----------------------------HHH-------HTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred cEEECCCC-cccccC-----------------------------HhH-------hcCCccccEEECCCCcCCccCcChhh
Confidence 66666543 121110 000 34678999999998763221122233
Q ss_pred HhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccC
Q 012255 257 LGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSD 336 (467)
Q Consensus 257 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 336 (467)
+..+++|++|+++++. +..... ...++|++|+++++. ++......+. .+++|+.|++++
T Consensus 167 ~~~l~~L~~L~l~~n~-l~~l~~----~~~~~L~~L~l~~n~-------------l~~~~~~~~~-~l~~L~~L~Ls~-- 225 (330)
T 1xku_A 167 FQGMKKLSYIRIADTN-ITTIPQ----GLPPSLTELHLDGNK-------------ITKVDAASLK-GLNNLAKLGLSF-- 225 (330)
T ss_dssp GGGCTTCCEEECCSSC-CCSCCS----SCCTTCSEEECTTSC-------------CCEECTGGGT-TCTTCCEEECCS--
T ss_pred ccCCCCcCEEECCCCc-cccCCc----cccccCCEEECCCCc-------------CCccCHHHhc-CCCCCCEEECCC--
Confidence 5778999999999875 332110 123789999999864 3322112222 688999999988
Q ss_pred CCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhc------CCCCC
Q 012255 337 GEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLAC------QFPHL 409 (467)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~------~~~~L 409 (467)
+.+++..... ...++ |+.|+++++. ++. ....+..+++|+.|+++++ .++......+. ..+.|
T Consensus 226 ------n~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~-lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 226 ------NSISAVDNGS-LANTPHLRELHLNNNK-LVK-VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp ------SCCCEECTTT-GGGSTTCCEEECCSSC-CSS-CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCC
T ss_pred ------CcCceeChhh-ccCCCCCCEEECCCCc-Ccc-CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccc
Confidence 3443322111 23456 9999999973 331 1123457899999999985 56554444443 24789
Q ss_pred CEEeecCCCCCCccc--hHhhhcCCCCCeeccCCC
Q 012255 410 SILRLRKCLGVTDDG--LKPLVGSHKLDLLAVEDC 442 (467)
Q Consensus 410 ~~L~l~~c~~it~~~--~~~l~~~~~L~~L~l~~c 442 (467)
+.|++.+.+ ++... ...+..+++++.++++++
T Consensus 296 ~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 296 SGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 999999854 55422 234444788999999876
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=1.7e-13 Score=124.66 Aligned_cols=83 Identities=22% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++|++|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++..+... ....+..+++|
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARID-AAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTC
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeC-HhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCC
Confidence 45666666555 444433333445566666666654 333211 112234556666666555223221 12233444555
Q ss_pred ccccccc
Q 012255 177 EDLLIKN 183 (467)
Q Consensus 177 ~~L~l~~ 183 (467)
++|++.+
T Consensus 108 ~~L~l~~ 114 (285)
T 1ozn_A 108 HTLHLDR 114 (285)
T ss_dssp CEEECTT
T ss_pred CEEECCC
Confidence 5555544
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.33 E-value=2e-14 Score=132.40 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=43.3
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQV 445 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~ 445 (467)
.+++|+.|+++++ .+++.....+.++++|+.|+++++ .+++.... ...+++|+.+++.+++.+
T Consensus 242 ~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~-~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 242 LSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ-GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSS-EEEEECCC-STTGGGSCGGGTCSSSEE
T ss_pred ccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCC-cccccCCC-CccccccChHHhcCCCCc
Confidence 4678888888874 454444455667888999999885 46643322 244788899999888754
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.32 E-value=2.1e-13 Score=126.37 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=37.9
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++++.|+++++ .++.. ...+..+++|++|+++++ .++ .++..+..+++|++|++.++ .+.. +...+..+++|
T Consensus 81 ~~l~~L~L~~n-~l~~l-p~~l~~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n-~l~~--lp~~l~~l~~L 152 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQF-PDQAFRLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARN-PLRA--LPASIASLNRL 152 (328)
T ss_dssp TTCCEEEEESS-CCSSC-CSCGGGGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESC-CCCC--CCGGGGGCTTC
T ss_pred cceeEEEccCC-Cchhc-ChhhhhCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCC-cccc--CcHHHhcCcCC
Confidence 55555655554 33311 112334556666666554 222 11222235566666666655 3331 23345555666
Q ss_pred cccccccC
Q 012255 177 EDLLIKNC 184 (467)
Q Consensus 177 ~~L~l~~~ 184 (467)
+.|++++|
T Consensus 153 ~~L~L~~n 160 (328)
T 4fcg_A 153 RELSIRAC 160 (328)
T ss_dssp CEEEEEEE
T ss_pred CEEECCCC
Confidence 66666554
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.32 E-value=6.6e-13 Score=123.50 Aligned_cols=37 Identities=5% Similarity=-0.021 Sum_probs=22.0
Q ss_pred CCCCCEEeecCCCCcC--HHHHHHhcCCCCCCEEeecCCC
Q 012255 381 AHYLEILELARCQEIS--DEGLQLACQFPHLSILRLRKCL 418 (467)
Q Consensus 381 ~~~L~~L~l~~c~~it--~~~~~~l~~~~~L~~L~l~~c~ 418 (467)
.++|+.|+++++. ++ +....++..+++|+.++++++.
T Consensus 293 ~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 4678888888853 33 2222345578889998888753
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=5.6e-13 Score=121.15 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=34.1
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQ 444 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~ 444 (467)
.+++|+.|+++++ .+++.....+.++++|+.|+++++ .++......+..+++|+.|++++++.
T Consensus 175 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 175 GLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 3555666666553 344433344445566666666663 35554444455566666666666653
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=4.5e-12 Score=123.91 Aligned_cols=148 Identities=17% Similarity=0.106 Sum_probs=79.6
Q ss_pred hCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccc
Q 012255 95 SCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLE 174 (467)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 174 (467)
.+++|++|+++++ .++......+..+++|++|+++++ .++... . +..+++|++|+++++ .++. +...+
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~------l~~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNN-YVQE------LLVGP 99 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS-CCEEEE--E-CTTCTTCCEEECCSS-EEEE------EEECT
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCc--c-cccCCCCCEEEecCC-cCCC------CCCCC
Confidence 4457888888776 565544445667778888888775 333211 1 446777788877776 3432 22335
Q ss_pred cccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHH
Q 012255 175 RLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLA 254 (467)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 254 (467)
+|+.|+++++ .++... ...+++|+.|+++++. +.... .
T Consensus 100 ~L~~L~L~~N-~l~~~~---------------------------------------~~~l~~L~~L~L~~N~-l~~~~-~ 137 (487)
T 3oja_A 100 SIETLHAANN-NISRVS---------------------------------------CSRGQGKKNIYLANNK-ITMLR-D 137 (487)
T ss_dssp TCCEEECCSS-CCCCEE---------------------------------------ECCCSSCEEEECCSSC-CCSGG-G
T ss_pred CcCEEECcCC-cCCCCC---------------------------------------ccccCCCCEEECCCCC-CCCCC-c
Confidence 6666666554 111100 1133566777776654 22211 1
Q ss_pred HHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccC
Q 012255 255 CVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVP 297 (467)
Q Consensus 255 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (467)
..+..+++|++|+++++. ++......+...+++|++|+++++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 138 LDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp BCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS
T ss_pred hhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCC
Confidence 112456667777766654 333222233334566666666654
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.26 E-value=5.5e-12 Score=122.07 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=46.4
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++++.|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++ .+... ....+..+++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIE-IGAFNGLANLNTLELFDN-RLTTI-PNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCCEEC-GGGGTTCSSCCEEECCSS-CCSSC-CTTTSCSCSSC
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCCccC-hhhccCCccCCEEECCCC-cCCee-CHhHhhccccC
Confidence 56667777665 455444444556677777777764 333222 122345677777777766 34322 12345556677
Q ss_pred cccccccC
Q 012255 177 EDLLIKNC 184 (467)
Q Consensus 177 ~~L~l~~~ 184 (467)
++|+++++
T Consensus 139 ~~L~L~~N 146 (440)
T 3zyj_A 139 KELWLRNN 146 (440)
T ss_dssp CEEECCSC
T ss_pred ceeeCCCC
Confidence 77776654
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=2.2e-12 Score=125.34 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=37.9
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++++.|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++ .+... ....+..+++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN-SIRQIE-VGAFNGLASLNTLELFDN-WLTVI-PSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCSBC-CTTTSSSCTTC
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC-ccCCcC-hhhccCcccCCEEECCCC-cCCcc-ChhhhcccCCC
Confidence 45555555554 344433333445555555555554 232211 112234555555555554 33221 12234445555
Q ss_pred cccccccC
Q 012255 177 EDLLIKNC 184 (467)
Q Consensus 177 ~~L~l~~~ 184 (467)
++|+++++
T Consensus 150 ~~L~L~~N 157 (452)
T 3zyi_A 150 RELWLRNN 157 (452)
T ss_dssp CEEECCSC
T ss_pred CEEECCCC
Confidence 55555543
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.25 E-value=1.1e-10 Score=116.72 Aligned_cols=264 Identities=16% Similarity=0.058 Sum_probs=139.2
Q ss_pred CccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHH
Q 012255 65 NLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVV 144 (467)
Q Consensus 65 ~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~ 144 (467)
+++.|+++..+.. .+... ..++|++|+++++ .++... . .+++|++|+++++ .++. ++.
T Consensus 41 ~l~~L~ls~n~L~-----~lp~~-------l~~~L~~L~L~~N-~l~~lp--~--~l~~L~~L~Ls~N-~l~~--lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-----TLPDC-------LPAHITTLVIPDN-NLTSLP--A--LPPELRTLEVSGN-QLTS--LPV-- 98 (622)
T ss_dssp CCCEEECCSSCCS-----CCCSC-------CCTTCSEEEECSC-CCSCCC--C--CCTTCCEEEECSC-CCSC--CCC--
T ss_pred CCcEEEecCCCcC-----ccChh-------hCCCCcEEEecCC-CCCCCC--C--cCCCCCEEEcCCC-cCCc--CCC--
Confidence 5888888765431 12211 1378999999887 455311 1 5688999999886 4443 222
Q ss_pred hcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhh
Q 012255 145 VGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAV 224 (467)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (467)
.+++|++|++.++ .+..... ..++|+.|++.++ .++. +..
T Consensus 99 -~l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~L~~N-~l~~-----lp~--------------------------- 138 (622)
T 3g06_A 99 -LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGN-QLTS-----LPV--------------------------- 138 (622)
T ss_dssp -CCTTCCEEEECSC-CCCCCCC-----CCTTCCEEECCSS-CCSC-----CCC---------------------------
T ss_pred -CCCCCCEEECcCC-cCCCCCC-----CCCCcCEEECCCC-CCCc-----CCC---------------------------
Confidence 6788899988887 4433211 3567888877664 2221 111
Q ss_pred hhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccc
Q 012255 225 DRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPI 304 (467)
Q Consensus 225 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 304 (467)
..++|++|+++++. +... ...+++|+.|.++++. ++... ..+++|+.|+++++.
T Consensus 139 --------~l~~L~~L~Ls~N~-l~~l-----~~~~~~L~~L~L~~N~-l~~l~-----~~~~~L~~L~Ls~N~------ 192 (622)
T 3g06_A 139 --------LPPGLQELSVSDNQ-LASL-----PALPSELCKLWAYNNQ-LTSLP-----MLPSGLQELSVSDNQ------ 192 (622)
T ss_dssp --------CCTTCCEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSC------
T ss_pred --------CCCCCCEEECcCCc-CCCc-----CCccCCCCEEECCCCC-CCCCc-----ccCCCCcEEECCCCC------
Confidence 22455555555543 2110 0123456666655543 22211 234556666665543
Q ss_pred cccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCC
Q 012255 305 LMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHY 383 (467)
Q Consensus 305 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~ 383 (467)
++. +....++|+.|.+.++ .++.. ....+ |+.|+++++ .++... ..+++
T Consensus 193 -------l~~-----l~~~~~~L~~L~L~~N--------~l~~l-----~~~~~~L~~L~Ls~N-~L~~lp----~~l~~ 242 (622)
T 3g06_A 193 -------LAS-----LPTLPSELYKLWAYNN--------RLTSL-----PALPSGLKELIVSGN-RLTSLP----VLPSE 242 (622)
T ss_dssp -------CSC-----CCCCCTTCCEEECCSS--------CCSSC-----CCCCTTCCEEECCSS-CCSCCC----CCCTT
T ss_pred -------CCC-----CCCccchhhEEECcCC--------ccccc-----CCCCCCCCEEEccCC-ccCcCC----CCCCc
Confidence 111 0012346666666552 22210 01123 666666664 222211 23567
Q ss_pred CCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHH
Q 012255 384 LEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAA 454 (467)
Q Consensus 384 L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~ 454 (467)
|+.|+++++ .++... . .+++|+.|++++| .++.. ...+..+++|+.|++++|+ ++......+.
T Consensus 243 L~~L~Ls~N-~L~~lp--~--~~~~L~~L~Ls~N-~L~~l-p~~l~~l~~L~~L~L~~N~-l~~~~~~~l~ 305 (622)
T 3g06_A 243 LKELMVSGN-RLTSLP--M--LPSGLLSLSVYRN-QLTRL-PESLIHLSSETTVNLEGNP-LSERTLQALR 305 (622)
T ss_dssp CCEEECCSS-CCSCCC--C--CCTTCCEEECCSS-CCCSC-CGGGGGSCTTCEEECCSCC-CCHHHHHHHH
T ss_pred CcEEECCCC-CCCcCC--c--ccccCcEEeCCCC-CCCcC-CHHHhhccccCEEEecCCC-CCCcCHHHHH
Confidence 777777774 444211 1 4567777777774 46632 2345557777778887776 6655444433
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.24 E-value=1.4e-13 Score=126.47 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=77.1
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhh-HHHHHhcCCCCcEEeccCCcccCchHHHHHhccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCG-ILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLER 175 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 175 (467)
++|++|+++++ .++......+..+++|++|+++++ .++..+ .......+++|++|++.++ .+.. +...+..+++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~--l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT--MSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEE--EEEEEETCTT
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-cccc--ChhhcCCCCC
Confidence 46667777665 444332233456667777777664 333211 0112225677777777766 3322 1122455667
Q ss_pred ccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHH
Q 012255 176 LEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLAC 255 (467)
Q Consensus 176 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 255 (467)
|++|++.++. ++...... ....+++|+.|+++++. +... ...
T Consensus 103 L~~L~l~~n~-l~~~~~~~-----------------------------------~~~~l~~L~~L~l~~n~-l~~~-~~~ 144 (306)
T 2z66_A 103 LEHLDFQHSN-LKQMSEFS-----------------------------------VFLSLRNLIYLDISHTH-TRVA-FNG 144 (306)
T ss_dssp CCEEECTTSE-EESSTTTT-----------------------------------TTTTCTTCCEEECTTSC-CEEC-STT
T ss_pred CCEEECCCCc-ccccccch-----------------------------------hhhhccCCCEEECCCCc-CCcc-chh
Confidence 7777666531 11100000 02345667777776654 1111 112
Q ss_pred HHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCC
Q 012255 256 VLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPS 298 (467)
Q Consensus 256 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (467)
.+..+++|++|+++++. +...........+++|++|+++++.
T Consensus 145 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCC
Confidence 23556677777777654 3221111122345667777776653
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.21 E-value=2.6e-12 Score=118.56 Aligned_cols=252 Identities=16% Similarity=0.119 Sum_probs=151.5
Q ss_pred CchhHHHHHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeecc
Q 012255 51 PVNEALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLK 130 (467)
Q Consensus 51 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~ 130 (467)
.....+..+...+++|++|+++.... ..+.. ..+ ..+++|++|+++++ .++... .+..+++|++|+++
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l-----~~~~~---~~~-~~l~~L~~L~Ls~n-~l~~~~--~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPL-----SQISA---ADL-APFTKLELLNLSSN-VLYETL--DLESLSTLRTLDLN 88 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCC-----CCCCH---HHH-TTCTTCCEEECTTS-CCEEEE--EETTCTTCCEEECC
T ss_pred chhhhHHHHhccCCCCCEEECcCCcc-----CcCCH---HHh-hCCCcCCEEECCCC-cCCcch--hhhhcCCCCEEECc
Confidence 34455666777788999999986543 12322 223 67899999999998 554422 26689999999999
Q ss_pred CCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccc
Q 012255 131 FTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVD 210 (467)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 210 (467)
++ .++... ..++|++|++.++ .+.... ...+++|+.|++.++ .++...-.
T Consensus 89 ~n-~l~~l~------~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N-~l~~~~~~----------------- 138 (317)
T 3o53_A 89 NN-YVQELL------VGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANN-KITMLRDL----------------- 138 (317)
T ss_dssp SS-EEEEEE------ECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSS-CCCSGGGB-----------------
T ss_pred CC-cccccc------CCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCC-CCCCccch-----------------
Confidence 86 444322 4589999999998 554431 234678999988775 22221000
Q ss_pred cccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCC
Q 012255 211 VNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLR 290 (467)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 290 (467)
.+..+++|+.|+++++. +.......+...+++|++|+++++. ++... . ...+++|+
T Consensus 139 -------------------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~-~~~l~~L~ 194 (317)
T 3o53_A 139 -------------------DEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVK--G-QVVFAKLK 194 (317)
T ss_dssp -------------------CTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--C-CCCCTTCC
T ss_pred -------------------hhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Ccccc--c-ccccccCC
Confidence 02346788888888765 4443334444567889999998875 43221 0 11367788
Q ss_pred eeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccc
Q 012255 291 SISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSF 370 (467)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 370 (467)
+|+++++. ++.... . ...+++|+.|+++++ .++. +
T Consensus 195 ~L~Ls~N~-------------l~~l~~-~-~~~l~~L~~L~L~~N--------~l~~--------------l-------- 229 (317)
T 3o53_A 195 TLDLSSNK-------------LAFMGP-E-FQSAAGVTWISLRNN--------KLVL--------------I-------- 229 (317)
T ss_dssp EEECCSSC-------------CCEECG-G-GGGGTTCSEEECTTS--------CCCE--------------E--------
T ss_pred EEECCCCc-------------CCcchh-h-hcccCcccEEECcCC--------cccc--------------h--------
Confidence 88887754 221100 1 124567777777661 2111 0
Q ss_pred cHHHHHHHHhCCCCCEEeecCCCCcC-HHHHHHhcCCCCCCEEeecCCC
Q 012255 371 NDVGMEALCSAHYLEILELARCQEIS-DEGLQLACQFPHLSILRLRKCL 418 (467)
Q Consensus 371 ~~~~~~~l~~~~~L~~L~l~~c~~it-~~~~~~l~~~~~L~~L~l~~c~ 418 (467)
. ..+..+++|+.|+++++ .++ +.....+..++.|+.+++.++.
T Consensus 230 ~----~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 230 E----KALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp C----TTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h----hHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCch
Confidence 0 01224567777777764 344 4444445566677776666443
No 75
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.18 E-value=6.8e-13 Score=122.17 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=58.5
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
|+.|+++++ .++......+..+++|+.|+++++ .++.. ...+..+++|+.|+++++ .+++.....+..+++|+.|+
T Consensus 199 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 199 LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKN-SLAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSS-EECCB-GGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEE
T ss_pred ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCC-ceeee-cCcccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEE
Confidence 666666654 233222233446899999999985 44422 223567899999999995 58877777777899999999
Q ss_pred cCCCCCCC
Q 012255 439 VEDCPQVS 446 (467)
Q Consensus 439 l~~c~~~~ 446 (467)
+++|. ++
T Consensus 275 Ls~N~-l~ 281 (313)
T 1ogq_A 275 VSFNN-LC 281 (313)
T ss_dssp CCSSE-EE
T ss_pred CcCCc-cc
Confidence 99996 44
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.18 E-value=2.7e-12 Score=118.12 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=40.3
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
.+++|+.|+++++ .++.. ...+ .++|+.|+++++ .+++. ..+..+++|+.|++++++ ++
T Consensus 251 ~l~~L~~L~Ls~N-~l~~i-p~~~--~~~L~~L~Ls~N-~l~~~--p~~~~l~~L~~L~L~~N~-l~ 309 (312)
T 1wwl_A 251 WPSQLNSLNLSFT-GLKQV-PKGL--PAKLSVLDLSYN-RLDRN--PSPDELPQVGNLSLKGNP-FL 309 (312)
T ss_dssp CCTTCCEEECTTS-CCSSC-CSSC--CSEEEEEECCSS-CCCSC--CCTTTSCEEEEEECTTCT-TT
T ss_pred hcCCCCEEECCCC-ccChh-hhhc--cCCceEEECCCC-CCCCC--hhHhhCCCCCEEeccCCC-CC
Confidence 3678899999885 44421 1111 168999999984 57765 225568899999999886 54
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.17 E-value=6.8e-13 Score=122.20 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=27.5
Q ss_pred CCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCcc
Q 012255 382 HYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDD 423 (467)
Q Consensus 382 ~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~ 423 (467)
++|+.|+++++ .+++. ..+..+++|+.|++++ +.+++.
T Consensus 274 ~~L~~L~Ls~N-~l~~~--p~~~~l~~L~~L~L~~-N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRN--PSPDELPQVGNLSLKG-NPFLDS 311 (312)
T ss_dssp SEEEEEECCSS-CCCSC--CCTTTSCEEEEEECTT-CTTTCC
T ss_pred CCceEEECCCC-CCCCC--hhHhhCCCCCEEeccC-CCCCCC
Confidence 68888999884 55554 2266788999999998 457653
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=113.69 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=36.0
Q ss_pred CCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCH
Q 012255 382 HYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 382 ~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~ 447 (467)
++|+.|+++++ .++.. ...+ .++|+.|+++++ .++.. ..+..+++|+.|++++++ +++
T Consensus 251 ~~L~~L~Ls~N-~l~~l-p~~~--~~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~L~~N~-l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQV-PKGL--PAKLRVLDLSSN-RLNRA--PQPDELPEVDNLTLDGNP-FLV 308 (310)
T ss_dssp TTCCCEECCSS-CCCSC-CSCC--CSCCSCEECCSC-CCCSC--CCTTSCCCCSCEECSSTT-TSC
T ss_pred CcCCEEECCCC-CCCch-hhhh--cCCCCEEECCCC-cCCCC--chhhhCCCccEEECcCCC-CCC
Confidence 57777777764 44421 1111 368888888884 47653 224447888888888886 554
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=3e-10 Score=104.10 Aligned_cols=55 Identities=24% Similarity=0.103 Sum_probs=22.5
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCC
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRC 158 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 158 (467)
++|++|+++++ .+++ +..+..+++|++|+++++ .++... . +..+++|++|++.++
T Consensus 41 ~~L~~L~l~~~-~i~~--l~~~~~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTT--IEGVQYLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGN 95 (308)
T ss_dssp HTCCEEECTTS-CCCC--CTTGGGCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSC
T ss_pred CCcCEEEeeCC-CccC--chhhhccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCC
Confidence 44445555444 2322 112334445555555443 222211 1 234445555555444
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=1.9e-10 Score=98.12 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=56.2
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
|+.|+++++ .+++.....+..+++|+.|++++|..+++. ..+.++++|+.|++++|. +++.. .+..+++|+.|+
T Consensus 114 L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~-i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDG-VHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp CCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBC-CCCCT--TGGGCSSCCEEE
T ss_pred CCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCC-CcChH--HhccCCCCCEEE
Confidence 555555553 455555666677888999999887546664 356788999999999864 77633 566688999999
Q ss_pred cCCCCCCC
Q 012255 439 VEDCPQVS 446 (467)
Q Consensus 439 l~~c~~~~ 446 (467)
+++++ ++
T Consensus 188 l~~N~-i~ 194 (197)
T 4ezg_A 188 AFSQT-IG 194 (197)
T ss_dssp ECBC----
T ss_pred eeCcc-cC
Confidence 98886 54
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.09 E-value=2.8e-10 Score=110.10 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=34.4
Q ss_pred CcEeeccccccccHHHHHHHH-hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCc--cchHhhhcC----
Q 012255 359 VRELSLDYVYSFNDVGMEALC-SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTD--DGLKPLVGS---- 431 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~--~~~~~l~~~---- 431 (467)
|+.|+++++. ++. +. .+++|+.|++++| .++.. .. .+++|+.|+++++ .++. .....+..+
T Consensus 319 L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N-~l~~l--p~--~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~ 386 (454)
T 1jl5_A 319 LEELNVSNNK-LIE-----LPALPPRLERLIASFN-HLAEV--PE--LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNS 386 (454)
T ss_dssp CCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSCC--CC--CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC
T ss_pred CCEEECCCCc-ccc-----ccccCCcCCEEECCCC-ccccc--cc--hhhhccEEECCCC-CCCcCCCChHHHHhhhhcc
Confidence 7777777753 322 12 2578888888875 34421 11 4678888888884 4655 222222222
Q ss_pred ---------CCCCeeccCCCC
Q 012255 432 ---------HKLDLLAVEDCP 443 (467)
Q Consensus 432 ---------~~L~~L~l~~c~ 443 (467)
++|+.|++++++
T Consensus 387 ~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 387 HLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ---------------------
T ss_pred cccccccccCcCCEEECCCCc
Confidence 678888888876
No 82
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.08 E-value=6.6e-11 Score=109.52 Aligned_cols=223 Identities=14% Similarity=0.141 Sum_probs=112.4
Q ss_pred cccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchh
Q 012255 173 LERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRG 252 (467)
Q Consensus 173 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (467)
.++++.|++.++ .++. +..-...+++|+.|.+....-. .++.....+++|++|+++++.. . .
T Consensus 80 ~~~l~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~n~l~------------~lp~~~~~l~~L~~L~Ls~n~l-~--~ 141 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQ--FPDQAFRLSHLQHMTIDAAGLM------------ELPDTMQQFAGLETLTLARNPL-R--A 141 (328)
T ss_dssp STTCCEEEEESS-CCSS--CCSCGGGGTTCSEEEEESSCCC------------CCCSCGGGGTTCSEEEEESCCC-C--C
T ss_pred ccceeEEEccCC-Cchh--cChhhhhCCCCCEEECCCCCcc------------chhHHHhccCCCCEEECCCCcc-c--c
Confidence 467888888775 2331 1111222566666666543211 1111134556777777776642 2 2
Q ss_pred HHHHHhcCCCCcEEEcccCcccchhHHHHH--------HHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcC
Q 012255 253 LACVLGKCRNLEKIHLDMCVGVRDSDIINM--------AQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNC 324 (467)
Q Consensus 253 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 324 (467)
+...+..+++|++|++++|....... ..+ ..++++|++|+++++.. ..+.. . ...+
T Consensus 142 lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~~~l~~L~~L~L~~n~l----------~~lp~----~-l~~l 205 (328)
T 4fcg_A 142 LPASIASLNRLRELSIRACPELTELP-EPLASTDASGEHQGLVNLQSLRLEWTGI----------RSLPA----S-IANL 205 (328)
T ss_dssp CCGGGGGCTTCCEEEEEEETTCCCCC-SCSEEEC-CCCEEESTTCCEEEEEEECC----------CCCCG----G-GGGC
T ss_pred CcHHHhcCcCCCEEECCCCCCccccC-hhHhhccchhhhccCCCCCEEECcCCCc----------CcchH----h-hcCC
Confidence 22234667777777777654221110 000 12367777777776541 01111 1 2256
Q ss_pred CCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHh
Q 012255 325 RMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLA 403 (467)
Q Consensus 325 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l 403 (467)
++|+.|+++++ .++. +..-....+ |+.|++++|..... ....+..+++|+.|++++|...+. ....+
T Consensus 206 ~~L~~L~L~~N--------~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~ 273 (328)
T 4fcg_A 206 QNLKSLKIRNS--------PLSA--LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLT-LPLDI 273 (328)
T ss_dssp TTCCEEEEESS--------CCCC--CCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCB-CCTTG
T ss_pred CCCCEEEccCC--------CCCc--CchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhh-cchhh
Confidence 77777777662 2221 111123344 77777776543321 112233566777777776543332 12234
Q ss_pred cCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCC
Q 012255 404 CQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDC 442 (467)
Q Consensus 404 ~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 442 (467)
.++++|+.|++++|. +.......+.++++|+.+.+...
T Consensus 274 ~~l~~L~~L~L~~n~-~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGCTTCCEEECTTCT-TCCCCCGGGGGSCTTCEEECCGG
T ss_pred hcCCCCCEEeCCCCC-chhhccHHHhhccCceEEeCCHH
Confidence 566777777777754 44444455555666666666543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.07 E-value=4.5e-10 Score=102.91 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=115.8
Q ss_pred cCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhh
Q 012255 146 GCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVD 225 (467)
Q Consensus 146 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (467)
.+++|++|++.++ .+... ..+..+++|+.|+++++ .++...-
T Consensus 39 ~l~~L~~L~l~~~-~i~~l---~~~~~l~~L~~L~L~~n-~i~~~~~--------------------------------- 80 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTI---EGVQYLNNLIGLELKDN-QITDLAP--------------------------------- 80 (308)
T ss_dssp HHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG---------------------------------
T ss_pred HcCCcCEEEeeCC-CccCc---hhhhccCCCCEEEccCC-cCCCChh---------------------------------
Confidence 4568888888887 45442 24666788888888765 2222100
Q ss_pred hhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCcccc
Q 012255 226 RWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPIL 305 (467)
Q Consensus 226 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 305 (467)
...+++|++|+++++. +... . .+..+++|++|+++++. +.... . ...+++|++|+++++.
T Consensus 81 -----~~~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~------- 140 (308)
T 1h6u_A 81 -----LKNLTKITELELSGNP-LKNV--S-AIAGLQSIKTLDLTSTQ-ITDVT--P-LAGLSNLQVLYLDLNQ------- 140 (308)
T ss_dssp -----GTTCCSCCEEECCSCC-CSCC--G-GGTTCTTCCEEECTTSC-CCCCG--G-GTTCTTCCEEECCSSC-------
T ss_pred -----HccCCCCCEEEccCCc-CCCc--h-hhcCCCCCCEEECCCCC-CCCch--h-hcCCCCCCEEECCCCc-------
Confidence 1356788888888775 3332 1 24678888999888875 44322 1 3567888888888764
Q ss_pred ccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCC
Q 012255 306 MSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYL 384 (467)
Q Consensus 306 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L 384 (467)
++... . ...+++|+.|++++ +.+++... ...++ |+.|+++++. +++.. .+..+++|
T Consensus 141 ------l~~~~--~-l~~l~~L~~L~l~~--------n~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L 197 (308)
T 1h6u_A 141 ------ITNIS--P-LAGLTNLQYLSIGN--------AQVSDLTP---LANLSKLTTLKADDNK-ISDIS--PLASLPNL 197 (308)
T ss_dssp ------CCCCG--G-GGGCTTCCEEECCS--------SCCCCCGG---GTTCTTCCEEECCSSC-CCCCG--GGGGCTTC
T ss_pred ------cCcCc--c-ccCCCCccEEEccC--------CcCCCChh---hcCCCCCCEEECCCCc-cCcCh--hhcCCCCC
Confidence 22211 1 23678888888877 33333211 33345 7777777753 33211 14567777
Q ss_pred CEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCc
Q 012255 385 EILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTD 422 (467)
Q Consensus 385 ~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~ 422 (467)
+.|++++| .+++.. .+.++++|+.|+++++. ++.
T Consensus 198 ~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~-i~~ 231 (308)
T 1h6u_A 198 IEVHLKNN-QISDVS--PLANTSNLFIVTLTNQT-ITN 231 (308)
T ss_dssp CEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEE-EEC
T ss_pred CEEEccCC-ccCccc--cccCCCCCCEEEccCCe-eec
Confidence 77777774 444332 35667777777777743 544
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.07 E-value=1.8e-09 Score=108.02 Aligned_cols=171 Identities=15% Similarity=0.042 Sum_probs=98.9
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
++|++|+++.... ..+.. .+++|++|+++++ .++... . .+++|++|+++++ .++... .
T Consensus 61 ~~L~~L~L~~N~l-----~~lp~--------~l~~L~~L~Ls~N-~l~~lp--~--~l~~L~~L~Ls~N-~l~~l~--~- 118 (622)
T 3g06_A 61 AHITTLVIPDNNL-----TSLPA--------LPPELRTLEVSGN-QLTSLP--V--LPPGLLELSIFSN-PLTHLP--A- 118 (622)
T ss_dssp TTCSEEEECSCCC-----SCCCC--------CCTTCCEEEECSC-CCSCCC--C--CCTTCCEEEECSC-CCCCCC--C-
T ss_pred CCCcEEEecCCCC-----CCCCC--------cCCCCCEEEcCCC-cCCcCC--C--CCCCCCEEECcCC-cCCCCC--C-
Confidence 6899999986643 12222 4789999999998 555421 1 6799999999986 444321 1
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhh
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLA 223 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 223 (467)
.+++|+.|++.++ .++... ...++|++|+++++ .++. +....++|+.|.+....-.
T Consensus 119 --~l~~L~~L~L~~N-~l~~lp-----~~l~~L~~L~Ls~N-~l~~-----l~~~~~~L~~L~L~~N~l~---------- 174 (622)
T 3g06_A 119 --LPSGLCKLWIFGN-QLTSLP-----VLPPGLQELSVSDN-QLAS-----LPALPSELCKLWAYNNQLT---------- 174 (622)
T ss_dssp --CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCS----------
T ss_pred --CCCCcCEEECCCC-CCCcCC-----CCCCCCCEEECcCC-cCCC-----cCCccCCCCEEECCCCCCC----------
Confidence 6789999999988 454321 12488999999876 3332 1123345555554432100
Q ss_pred hhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccC
Q 012255 224 VDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVP 297 (467)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (467)
.+ ...+++|+.|+++++. +.. +....++|+.|.++++. ++.. ...+++|++|+++++
T Consensus 175 --~l---~~~~~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N~-l~~l-----~~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 175 --SL---PMLPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYNNR-LTSL-----PALPSGLKELIVSGN 231 (622)
T ss_dssp --CC---CCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSSC-----CCCCTTCCEEECCSS
T ss_pred --CC---cccCCCCcEEECCCCC-CCC-----CCCccchhhEEECcCCc-cccc-----CCCCCCCCEEEccCC
Confidence 01 1234566666666654 221 01124566666666553 3211 112356666666654
No 85
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=1.2e-09 Score=101.76 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=87.7
Q ss_pred HHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHh-cCCCCCeEE
Q 012255 253 LACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALAD-NCRMLESVR 331 (467)
Q Consensus 253 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~L~~L~ 331 (467)
+..++..+|+|+.|.+.++..+.... + ..++|++|.+..| .+++..+..+.. .+|+|+.|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~---~--~~~~L~~L~L~~~-------------~l~~~~l~~l~~~~lp~L~~L~ 225 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK---K--PRPNLKSLEIISG-------------GLPDSVVEDILGSDLPNLEKLV 225 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS---C--BCTTCSEEEEECS-------------BCCHHHHHHHHHSBCTTCCEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc---c--cCCCCcEEEEecC-------------CCChHHHHHHHHccCCCCcEEE
Confidence 45566777888888887653222111 1 2577888887764 467777776664 477888887
Q ss_pred ecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHHHH-H--HhCCCCCEEeecCCCCcCHHHHHHhc---C
Q 012255 332 ISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEA-L--CSAHYLEILELARCQEISDEGLQLAC---Q 405 (467)
Q Consensus 332 l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-l--~~~~~L~~L~l~~c~~it~~~~~~l~---~ 405 (467)
+..+...+ ..+.++ . .+.. + ..+|+|+.|++.+| .+++.+...++ .
T Consensus 226 L~~~~~~~-----~~~~~~--------------------~--~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 226 LYVGVEDY-----GFDGDM--------------------N--VFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDI 277 (362)
T ss_dssp EECBCGGG-----TCCSCG--------------------G--GTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSS
T ss_pred Eecccccc-----ccchhH--------------------H--HHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCcc
Confidence 74310000 000000 0 0000 1 13667777777664 44444444443 3
Q ss_pred CCCCCEEeecCCCCCCccchHhhhc----CCCCCeeccCCCCCCCHHHHHHHHh
Q 012255 406 FPHLSILRLRKCLGVTDDGLKPLVG----SHKLDLLAVEDCPQVSERGVQGAAR 455 (467)
Q Consensus 406 ~~~L~~L~l~~c~~it~~~~~~l~~----~~~L~~L~l~~c~~~~~~~~~~l~~ 455 (467)
+|+|+.|+++. +.+++.+...+.. +++|+.|++++|. +++++++.+.+
T Consensus 278 ~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~ 329 (362)
T 2ra8_A 278 LPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQK 329 (362)
T ss_dssp GGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHH
T ss_pred CCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHH
Confidence 56677777765 4577766555543 5677777777774 77777777766
No 86
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=2.6e-11 Score=112.46 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCC-EEe
Q 012255 311 RLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLE-ILE 388 (467)
Q Consensus 311 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~ 388 (467)
.+....+..+...|++|+++++.. +.++..+- ..+.+|+ |+.+.+.+. ++..+-.++..+++|+ .+.
T Consensus 212 ~l~~~~~~~l~~~~~~L~~l~L~~--------n~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 212 KLDNADFKLIRDYMPNLVSLDISK--------TNATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECTT--------BCCCEECT-TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred eecHHHHHHHHHhcCCCeEEECCC--------CCcceecH-hhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEE
Confidence 344444444444455555555544 11111110 1123344 566655542 3333333455788898 999
Q ss_pred ecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeecc
Q 012255 389 LARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAV 439 (467)
Q Consensus 389 l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l 439 (467)
+.+ .++..+-.++.+|++|+.|++.. ++++..+-..+..|++|+.+..
T Consensus 281 l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 976 56655556777899999999977 5688888888888999988753
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.05 E-value=2.2e-11 Score=119.09 Aligned_cols=179 Identities=19% Similarity=0.142 Sum_probs=106.7
Q ss_pred hHHHHHHhhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCC
Q 012255 54 EALTSLCNRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTT 133 (467)
Q Consensus 54 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 133 (467)
..+..+...+++|++|++++... ..+....+ ..+++|++|+++++ .++... .+..+++|++|+++++
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls~n~l-----~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~--~l~~l~~L~~L~Ls~N- 90 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLSGNPL-----SQISAADL----APFTKLELLNLSSN-VLYETL--DLESLSTLRTLDLNNN- 90 (487)
T ss_dssp HHHHTTSTTGGGCCEEECCSSCC-----CCCCGGGG----TTCTTCCEEECTTS-CCEEEE--ECTTCTTCCEEECCSS-
T ss_pred HHHHHhcccCCCccEEEeeCCcC-----CCCCHHHH----hCCCCCCEEEeeCC-CCCCCc--ccccCCCCCEEEecCC-
Confidence 33444445566999999986643 12322222 57899999999998 555422 2678999999999986
Q ss_pred CCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCccccccccccccccc
Q 012255 134 RITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNY 213 (467)
Q Consensus 134 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 213 (467)
.++... ..++|+.|++.++ .+.... ...+++|+.|+++++ .++...-. .
T Consensus 91 ~l~~l~------~~~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N-~l~~~~~~-~------------------ 139 (487)
T 3oja_A 91 YVQELL------VGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANN-KITMLRDL-D------------------ 139 (487)
T ss_dssp EEEEEE------ECTTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSS-CCCSGGGB-C------------------
T ss_pred cCCCCC------CCCCcCEEECcCC-cCCCCC----ccccCCCCEEECCCC-CCCCCCch-h------------------
Confidence 454322 4589999999998 454331 234678999998876 23221000 0
Q ss_pred ccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeee
Q 012255 214 RYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSIS 293 (467)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 293 (467)
+..+++|+.|+++++. +.+.....+...+++|++|+++++. ++... . ...+++|++|+
T Consensus 140 -----------------~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~--~-~~~l~~L~~L~ 197 (487)
T 3oja_A 140 -----------------EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVK--G-QVVFAKLKTLD 197 (487)
T ss_dssp -----------------GGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--C-CCCCTTCCEEE
T ss_pred -----------------hcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCc-ccccc--c-cccCCCCCEEE
Confidence 2234566677766654 3332233333356677777777664 32211 0 11356666666
Q ss_pred eccCC
Q 012255 294 LRVPS 298 (467)
Q Consensus 294 l~~~~ 298 (467)
++++.
T Consensus 198 Ls~N~ 202 (487)
T 3oja_A 198 LSSNK 202 (487)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 66643
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.01 E-value=2e-09 Score=104.09 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=88.9
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCH
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTD 314 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 314 (467)
++|+.|+++++. +.. +.. +..+++|++|+++++. +... ....++|++|+++++. ++.
T Consensus 215 ~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~l~~N~-l~~l-----~~~~~~L~~L~l~~N~-------------l~~ 271 (454)
T 1jl5_A 215 LSLESIVAGNNI-LEE--LPE-LQNLPFLTTIYADNNL-LKTL-----PDLPPSLEALNVRDNY-------------LTD 271 (454)
T ss_dssp TTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSC-CSSC-----CSCCTTCCEEECCSSC-------------CSC
T ss_pred CcccEEECcCCc-CCc--ccc-cCCCCCCCEEECCCCc-CCcc-----cccccccCEEECCCCc-------------ccc
Confidence 467777777654 221 112 3566777777777654 3221 1124677777777654 111
Q ss_pred HHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhC-CCCCEEeecCC
Q 012255 315 ESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSA-HYLEILELARC 392 (467)
Q Consensus 315 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~c 392 (467)
+....++|+.|++++ +.+++.. ...+ |+.|+++++. ++. +..+ ++|+.|+++++
T Consensus 272 -----l~~~~~~L~~L~ls~--------N~l~~l~-----~~~~~L~~L~l~~N~-l~~-----i~~~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 272 -----LPELPQSLTFLDVSE--------NIFSGLS-----ELPPNLYYLNASSNE-IRS-----LCDLPPSLEELNVSNN 327 (454)
T ss_dssp -----CCCCCTTCCEEECCS--------SCCSEES-----CCCTTCCEEECCSSC-CSE-----ECCCCTTCCEEECCSS
T ss_pred -----cCcccCcCCEEECcC--------CccCccc-----CcCCcCCEEECcCCc-CCc-----ccCCcCcCCEEECCCC
Confidence 111246788888876 3333210 1123 8888888763 222 2233 58999999885
Q ss_pred CCcCHHHHHHhc-CCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 393 QEISDEGLQLAC-QFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 393 ~~it~~~~~~l~-~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
.++. +. .+++|+.|++++| .++.... .+++|+.|++++|+
T Consensus 328 -~l~~-----lp~~~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 328 -KLIE-----LPALPPRLERLIASFN-HLAEVPE----LPQNLKQLHVEYNP 368 (454)
T ss_dssp -CCSC-----CCCCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSC
T ss_pred -cccc-----ccccCCcCCEEECCCC-ccccccc----hhhhccEEECCCCC
Confidence 4443 22 3688999999985 4664222 37899999999986
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.00 E-value=2.1e-10 Score=103.19 Aligned_cols=177 Identities=13% Similarity=0.059 Sum_probs=105.5
Q ss_pred CCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCC
Q 012255 234 CENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLT 313 (467)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 313 (467)
+++|+.|.+.++...... . +..+++|++|+++++. +.... ....+++|++|+++++. ++
T Consensus 40 l~~L~~L~l~~~~i~~~~---~-l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~L~~n~-------------l~ 98 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ---G-IQYLPNVRYLALGGNK-LHDIS---ALKELTNLTYLILTGNQ-------------LQ 98 (272)
T ss_dssp HTTCCEEECTTSCCCCCT---T-GGGCTTCCEEECTTSC-CCCCG---GGTTCTTCCEEECTTSC-------------CC
T ss_pred ccceeeeeeCCCCccccc---c-cccCCCCcEEECCCCC-CCCch---hhcCCCCCCEEECCCCc-------------cC
Confidence 456777777765522211 1 3567777888777765 33211 23466778888777754 21
Q ss_pred HHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCC
Q 012255 314 DESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARC 392 (467)
Q Consensus 314 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c 392 (467)
...- .....+++|++|+++++ .++...- ..+..++ |+.|+++++ .++......+..+++|+.|++++|
T Consensus 99 ~~~~-~~~~~l~~L~~L~L~~n--------~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 99 SLPN-GVFDKLTNLKELVLVEN--------QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CCCT-TTTTTCTTCCEEECTTS--------CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCh-hHhcCCcCCCEEECCCC--------cCCccCH-HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC
Confidence 1100 01125677888888763 2221110 1122344 888888776 343322223446788999999885
Q ss_pred CCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCC
Q 012255 393 QEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQ 444 (467)
Q Consensus 393 ~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~ 444 (467)
.+++.....+.++++|+.|++++| .++......+..+++|+.|++++|+.
T Consensus 168 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 168 -QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -CcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence 555544444567889999999985 47765555566688999999988763
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.99 E-value=2.8e-10 Score=104.54 Aligned_cols=233 Identities=16% Similarity=0.056 Sum_probs=121.0
Q ss_pred CCCCEEeecCCCCCChHhHHHHh---cCCCCceeeccCCCCCChhhHHHHH-hcCCCCcEEeccCCcccCch-H--HHHH
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLA---SCLNLSTLKLKFTTRITGCGILSVV-VGCKNLTVLHLIRCLNVNSV-E--WLEY 169 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~-~--~~~~ 169 (467)
..++.+.+..+ .+++..+..+. .+++|++|+++++. ++......++ ..+++|++|++.++ .+... . ....
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHH
Confidence 44666777665 45555444332 34567777777652 2221111111 45677777777776 33321 0 1123
Q ss_pred hcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccC
Q 012255 170 LGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISP 249 (467)
Q Consensus 170 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (467)
+..+++|++|+++++. +..... ..+..+++|++|+++++....
T Consensus 141 ~~~~~~L~~L~Ls~n~-l~~~~~------------------------------------~~~~~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAH-SPAFSC------------------------------------EQVRAFPALTSLDLSDNPGLG 183 (310)
T ss_dssp TTBCSCCCEEEEECCS-SCCCCT------------------------------------TSCCCCTTCCEEECCSCTTCH
T ss_pred hhhccCCCEEEeeCCC-cchhhH------------------------------------HHhccCCCCCEEECCCCCCcc
Confidence 3466777777777652 211000 003356778888887765222
Q ss_pred chhHHH--HHhcCCCCcEEEcccCcccch--hHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHH--hc
Q 012255 250 GRGLAC--VLGKCRNLEKIHLDMCVGVRD--SDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALA--DN 323 (467)
Q Consensus 250 ~~~l~~--l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~ 323 (467)
..++.. ....+++|++|.++++. ++. .....+...+++|++|+++++.. ++..-..+. ..
T Consensus 184 ~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l-------------~~~~p~~~~~~~~ 249 (310)
T 4glp_A 184 ERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSL-------------RATVNPSAPRCMW 249 (310)
T ss_dssp HHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCC-------------CCCCCSCCSSCCC
T ss_pred chhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCC-------------CccchhhHHhccC
Confidence 222211 12467788888888775 442 22222445778888888887642 111000001 01
Q ss_pred CCCCCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHh
Q 012255 324 CRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLA 403 (467)
Q Consensus 324 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l 403 (467)
+++|++|+++++ .++. +.. . -+++|+.|+++++ .++.. ..+
T Consensus 250 ~~~L~~L~Ls~N--------~l~~----------------------lp~----~--~~~~L~~L~Ls~N-~l~~~--~~~ 290 (310)
T 4glp_A 250 SSALNSLNLSFA--------GLEQ----------------------VPK----G--LPAKLRVLDLSSN-RLNRA--PQP 290 (310)
T ss_dssp CTTCCCEECCSS--------CCCS----------------------CCS----C--CCSCCSCEECCSC-CCCSC--CCT
T ss_pred cCcCCEEECCCC--------CCCc----------------------hhh----h--hcCCCCEEECCCC-cCCCC--chh
Confidence 367888888762 2221 000 0 0257777777774 44432 124
Q ss_pred cCCCCCCEEeecCCCCCCcc
Q 012255 404 CQFPHLSILRLRKCLGVTDD 423 (467)
Q Consensus 404 ~~~~~L~~L~l~~c~~it~~ 423 (467)
..+++|+.|++++ +.+++.
T Consensus 291 ~~l~~L~~L~L~~-N~l~~~ 309 (310)
T 4glp_A 291 DELPEVDNLTLDG-NPFLVP 309 (310)
T ss_dssp TSCCCCSCEECSS-TTTSCC
T ss_pred hhCCCccEEECcC-CCCCCC
Confidence 4678888888887 446654
No 91
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=5.9e-09 Score=87.56 Aligned_cols=122 Identities=18% Similarity=0.133 Sum_probs=92.0
Q ss_pred HHHHHHhcCCCCCeEEecccCCCCCccc-cccHHHHHHHHHh---CC-CcEeeccccccccHHHHHHHH----hCCCCCE
Q 012255 316 SLKALADNCRMLESVRISFSDGEFPSIS-SFTLDGILTLIQK---CP-VRELSLDYVYSFNDVGMEALC----SAHYLEI 386 (467)
Q Consensus 316 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~~---~~-L~~L~l~~~~~~~~~~~~~l~----~~~~L~~ 386 (467)
.+..+...++.|++|++++ + .+++.+...+... ++ |++|+++++ .+++.+...+. ..++|++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~--------n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~ 97 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNN--------IMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKS 97 (185)
T ss_dssp HHHHHHTTCTTCCEEECTT--------CTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHHHhcCCCCCEEEecC--------CCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCE
Confidence 3444555677788888876 4 6777776666543 34 888888875 57777766655 4689999
Q ss_pred EeecCCCCcCHHHHHHhc----CCCCCCEEee--cCCCCCCccchHhhhc----CCCCCeeccCCCCCCCHHH
Q 012255 387 LELARCQEISDEGLQLAC----QFPHLSILRL--RKCLGVTDDGLKPLVG----SHKLDLLAVEDCPQVSERG 449 (467)
Q Consensus 387 L~l~~c~~it~~~~~~l~----~~~~L~~L~l--~~c~~it~~~~~~l~~----~~~L~~L~l~~c~~~~~~~ 449 (467)
|++++ ..+++.+..+++ ..++|+.|++ ++ +.+++.+...++. .++|+.|++++|. +++++
T Consensus 98 L~L~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 98 LNVES-NFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp EECCS-SCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred EECcC-CcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 99998 488998877665 5788999999 66 5699998877775 6899999999996 88776
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.96 E-value=2.5e-10 Score=102.98 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=17.3
Q ss_pred CCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 408 HLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 408 ~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+|+.|+++++ .++......+..+++|+.|++++++
T Consensus 201 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 201 RLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 5555555553 2444333333345555555555443
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.95 E-value=9.5e-11 Score=105.38 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=97.9
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCH
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTD 314 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 314 (467)
++++.|+++++. +..... ..+..+++|++|+++++. ++... ...+..+++|++|+++++... .+..
T Consensus 37 ~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n~l~----------~~~~ 102 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPS-KAFHRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTDNKLQ----------ALPI 102 (270)
T ss_dssp TTCSEEECCSSC-CSCCCT-TSSSSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCSSCCC----------CCCT
T ss_pred CCCCEEECcCCC-CCeeCH-HHhcCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCCCcCC----------cCCH
Confidence 456666666554 222111 123456667777776653 32111 111234566777777664310 1111
Q ss_pred HHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCC
Q 012255 315 ESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQ 393 (467)
Q Consensus 315 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~ 393 (467)
.....+++|++|+++++ .++..... .+...+ |+.|+++++ .++......+..+++|+.|+++++
T Consensus 103 ----~~~~~l~~L~~L~l~~n--------~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n- 167 (270)
T 2o6q_A 103 ----GVFDQLVNLAELRLDRN--------QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN- 167 (270)
T ss_dssp ----TTTTTCSSCCEEECCSS--------CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred ----hHcccccCCCEEECCCC--------ccCeeCHH-HhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-
Confidence 01124567777777652 22221110 112334 777777775 333322223446788888888874
Q ss_pred CcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 394 EISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 394 ~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
.++......+.++++|+.|+++++ .++......+..+++|+.|++++++
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 455444445667888889998885 5776555556668888888888876
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.90 E-value=3.1e-09 Score=90.49 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=33.3
Q ss_pred hCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccc
Q 012255 95 SCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLE 174 (467)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 174 (467)
.+++|++|+++++ .+++ +..+..+++|++|+++++ .++..... .+..+++|++|++.++ .+... ....+..++
T Consensus 64 ~l~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~Ls~n-~i~~~-~~~~l~~l~ 136 (197)
T 4ezg_A 64 YAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGK-DVTSDKIP-NLSGLTSLTLLDISHS-AHDDS-ILTKINTLP 136 (197)
T ss_dssp GCTTCSEEEEESC-CCSC--CGGGTTCTTCCEEEEECT-TCBGGGSC-CCTTCTTCCEEECCSS-BCBGG-GHHHHTTCS
T ss_pred cCCCCCEEEccCC-CCCc--chhhhcCCCCCEEEeECC-ccCcccCh-hhcCCCCCCEEEecCC-ccCcH-hHHHHhhCC
Confidence 3455555555554 3332 123334455555555543 23221111 1223445555555444 23221 223333444
Q ss_pred ccccccccc
Q 012255 175 RLEDLLIKN 183 (467)
Q Consensus 175 ~L~~L~l~~ 183 (467)
+|++|++++
T Consensus 137 ~L~~L~L~~ 145 (197)
T 4ezg_A 137 KVNSIDLSY 145 (197)
T ss_dssp SCCEEECCS
T ss_pred CCCEEEccC
Confidence 444444443
No 95
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.90 E-value=1.1e-09 Score=70.66 Aligned_cols=42 Identities=29% Similarity=0.475 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccceE
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLSL 43 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~~ 43 (467)
+.+||+|++.+||+||+ ..++.+++.|||+|+.+......|.
T Consensus 9 ~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred HHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCChHHHH
Confidence 57899999999999997 9999999999999999976655443
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.89 E-value=4.2e-10 Score=101.52 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=40.1
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++|++|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++ .+... ....+..+++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGN-PIQSL-ALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTC-CCCEE-CTTTTTTCTTC
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccC-HHHccCCcCCCEEECCCC-ccCcc-ChhhhcCCccc
Confidence 45677777665 455433334455666777776664 333211 112335566666666655 33221 11233444455
Q ss_pred ccccccc
Q 012255 177 EDLLIKN 183 (467)
Q Consensus 177 ~~L~l~~ 183 (467)
++|++.+
T Consensus 103 ~~L~l~~ 109 (276)
T 2z62_A 103 QKLVAVE 109 (276)
T ss_dssp CEEECTT
T ss_pred cEEECCC
Confidence 5554443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.88 E-value=4e-09 Score=95.70 Aligned_cols=165 Identities=20% Similarity=0.202 Sum_probs=78.9
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCH
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTD 314 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 314 (467)
++|+.|+++++...... . +..+++|++|+++++. +..... ...+++|++|+++++. +++
T Consensus 46 ~~L~~L~l~~~~i~~~~---~-~~~l~~L~~L~L~~n~-l~~~~~---l~~l~~L~~L~l~~n~-------------l~~ 104 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ---G-IQYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFLDENK-------------VKD 104 (291)
T ss_dssp HTCCEEECTTSCCCCCT---T-GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-------------CCC
T ss_pred CcccEEEccCCCcccCh---h-HhcCCCCCEEEccCCc-cCCCcc---cccCCCCCEEECCCCc-------------CCC
Confidence 45555555554321111 1 3445666666665553 322111 2345666666665543 221
Q ss_pred HHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCC
Q 012255 315 ESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQ 393 (467)
Q Consensus 315 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~ 393 (467)
. ..+ ..+++|+.|++++ +.+++. . -...++ |+.|+++++. +++. ..+..+++|+.|++++|
T Consensus 105 ~--~~l-~~l~~L~~L~L~~--------n~i~~~--~-~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N- 166 (291)
T 1h6t_A 105 L--SSL-KDLKKLKSLSLEH--------NGISDI--N-GLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN- 166 (291)
T ss_dssp G--GGG-TTCTTCCEEECTT--------SCCCCC--G-GGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-
T ss_pred C--hhh-ccCCCCCEEECCC--------CcCCCC--h-hhcCCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCC-
Confidence 1 111 2455666666655 222221 0 112234 6666666542 2221 23445666666666664
Q ss_pred CcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 394 EISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 394 ~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
.+++.. .+.++++|+.|+++++ .+++. ..+..+++|+.|++++++
T Consensus 167 ~l~~~~--~l~~l~~L~~L~L~~N-~i~~l--~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 167 QISDIV--PLAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCCCG--GGTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEEEEEEE
T ss_pred ccccch--hhcCCCccCEEECCCC-cCCCC--hhhccCCCCCEEECcCCc
Confidence 344322 1556666666666663 35542 334456666666666664
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.86 E-value=1.2e-10 Score=102.69 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=37.8
Q ss_pred CCCCEEeecCCCCcCHHHHHHhcCC-CCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCC
Q 012255 382 HYLEILELARCQEISDEGLQLACQF-PHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQ 444 (467)
Q Consensus 382 ~~L~~L~l~~c~~it~~~~~~l~~~-~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~ 444 (467)
++|+.|+++++..++......+.++ ++|+.|++++ +.++..... .+++|+.|.+.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~---~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK---GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT---TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh---HhccCceeeccCccC
Confidence 5677777777544554444455667 8888888888 446643222 367888888887754
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.84 E-value=5.7e-09 Score=104.18 Aligned_cols=76 Identities=26% Similarity=0.290 Sum_probs=37.0
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
|+.|+++++. +++. ..+..+++|+.|+|++| .+++... +..+++|+.|++++| .+++. ..+..+++|+.|+
T Consensus 133 L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 133 LESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLE 203 (605)
T ss_dssp CSEEECCSSC-CCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEE
T ss_pred cCEEECCCCc-cCCc--hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCC-CCCCC--hHHccCCCCCEEE
Confidence 5555555542 2221 23334556666666554 3333211 445566666666653 35442 3344456666666
Q ss_pred cCCCC
Q 012255 439 VEDCP 443 (467)
Q Consensus 439 l~~c~ 443 (467)
+++|+
T Consensus 204 L~~N~ 208 (605)
T 1m9s_A 204 LFSQE 208 (605)
T ss_dssp CCSEE
T ss_pred ccCCc
Confidence 66554
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.84 E-value=2.4e-08 Score=90.53 Aligned_cols=80 Identities=30% Similarity=0.304 Sum_probs=41.8
Q ss_pred hhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhccc
Q 012255 94 NSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKL 173 (467)
Q Consensus 94 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 173 (467)
..+++|++|+++++ .+++... +..+++|++|+++++ .++... . +..+++|++|++.++ .+... ..+..+
T Consensus 65 ~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~L~~n-~i~~~---~~l~~l 133 (291)
T 1h6t_A 65 QYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKDLS--S-LKDLKKLKSLSLEHN-GISDI---NGLVHL 133 (291)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCGG--G-GTTCTTCCEEECTTS-CCCCC---GGGGGC
T ss_pred hcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCCCCh--h-hccCCCCCEEECCCC-cCCCC---hhhcCC
Confidence 34566666666665 4443221 456666666666654 333211 1 335566666666665 33332 234455
Q ss_pred ccccccccccC
Q 012255 174 ERLEDLLIKNC 184 (467)
Q Consensus 174 ~~L~~L~l~~~ 184 (467)
++|+.|+++++
T Consensus 134 ~~L~~L~l~~n 144 (291)
T 1h6t_A 134 PQLESLYLGNN 144 (291)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEccCC
Confidence 56666665543
No 101
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.82 E-value=3.4e-09 Score=95.27 Aligned_cols=179 Identities=18% Similarity=0.120 Sum_probs=95.7
Q ss_pred hhCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhH
Q 012255 61 NRFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGI 140 (467)
Q Consensus 61 ~~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l 140 (467)
..+++|+.|.++..+. ..+. .+ ..+++|++|+++++ .+++ +..+..+++|++|+++++ .++...
T Consensus 38 ~~l~~L~~L~l~~~~i-----~~~~-----~l-~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n-~l~~~~- 101 (272)
T 3rfs_A 38 NELNSIDQIIANNSDI-----KSVQ-----GI-QYLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGN-QLQSLP- 101 (272)
T ss_dssp HHHTTCCEEECTTSCC-----CCCT-----TG-GGCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTS-CCCCCC-
T ss_pred ccccceeeeeeCCCCc-----cccc-----cc-ccCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCC-ccCccC-
Confidence 3456777777764432 1111 12 45777777777776 4544 234556777777777765 333221
Q ss_pred HHHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchh
Q 012255 141 LSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYD 220 (467)
Q Consensus 141 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 220 (467)
...+..+++|++|++.++ .+... ....+..+++|+.|++.++ .++.... .
T Consensus 102 ~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-~-------------------------- 151 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPK-G-------------------------- 151 (272)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-T--------------------------
T ss_pred hhHhcCCcCCCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCC-ccCccCH-H--------------------------
Confidence 122346677777777776 34322 2223455667777776654 2221000 0
Q ss_pred hhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCC
Q 012255 221 RLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPS 298 (467)
Q Consensus 221 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (467)
.+..+++|+.|+++++. +.... ...+..+++|++|+++++. +..... .....+++|++|++.+++
T Consensus 152 ---------~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 152 ---------VFDKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ---------TTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ---------HhccCccCCEEECCCCC-cCccC-HHHhcCCccCCEEECCCCc-CCccCH-HHHhCCcCCCEEEccCCC
Confidence 02355677777777664 22211 1223566777777777664 332111 122356777777777654
No 102
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=3e-08 Score=83.21 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=93.2
Q ss_pred HHHHHHHHHhCC-CcEeeccccccccHHHHHHHH----hCCCCCEEeecCCCCcCHHHHHHhc----CCCCCCEEeecCC
Q 012255 347 LDGILTLIQKCP-VRELSLDYVYSFNDVGMEALC----SAHYLEILELARCQEISDEGLQLAC----QFPHLSILRLRKC 417 (467)
Q Consensus 347 ~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~~l~----~~~~L~~L~l~~c 417 (467)
.+.+..+...++ |++|+++++..+++.++..+. ..++|++|++++| .+++.+...++ ..++|+.|++++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 345666667777 999999997688998887776 4689999999995 79999887665 4689999999995
Q ss_pred CCCCccchHhhhc----CCCCCeecc--CCCCCCCHHHHHHHHhhcccccccc
Q 012255 418 LGVTDDGLKPLVG----SHKLDLLAV--EDCPQVSERGVQGAARSVSFRQDLS 464 (467)
Q Consensus 418 ~~it~~~~~~l~~----~~~L~~L~l--~~c~~~~~~~~~~l~~~~~~~~~l~ 464 (467)
.|++.++..++. .++|+.|++ ++|. +++++...+++.++..+.|.
T Consensus 104 -~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~ 154 (185)
T 1io0_A 104 -FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLL 154 (185)
T ss_dssp -CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCC
T ss_pred -cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcC
Confidence 599999877764 789999999 6675 99999988888766555444
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.80 E-value=4.2e-09 Score=94.51 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=38.2
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
+++++|+++++ .++......+..+++|++|+++++ .++... ..++..+++|++|++.++ .+... ....+..+++|
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDN-KLQAL-PIGVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSS-CCCCC-CTTTTTTCSSC
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCC-cCCcC-CHhHcccccCC
Confidence 34556666554 344332223445556666666553 222211 112234556666666555 33221 11234445566
Q ss_pred cccccccC
Q 012255 177 EDLLIKNC 184 (467)
Q Consensus 177 ~~L~l~~~ 184 (467)
++|+++++
T Consensus 112 ~~L~l~~n 119 (270)
T 2o6q_A 112 AELRLDRN 119 (270)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 66666543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.78 E-value=1e-08 Score=102.34 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=26.8
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVP 297 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (467)
.+++|+.|+|+++. +.+... +..+++|++|+++++. +.+. . ....+++|+.|++.++
T Consensus 151 ~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-i~~l--~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNH-ISDL--R-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp SCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCBC--G-GGTTCTTCSEEECCSE
T ss_pred ccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCCC-CCCC--h-HHccCCCCCEEEccCC
Confidence 44556666665554 222111 3455566666665553 3321 1 1234555565555554
No 105
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=2.8e-08 Score=92.40 Aligned_cols=224 Identities=19% Similarity=0.184 Sum_probs=131.6
Q ss_pred hhHHHHHHhhCC--CccEEEeecccccccCCCCCCHHHHHHH---HhhCCCCCEEeecCCCC----C---ChHhHHH-Hh
Q 012255 53 NEALTSLCNRFG--NLTKVEISYAGWMSRLGKQLDDQGLLIL---SNSCPYLTDLTLNYCTF----I---TDVGLCY-LA 119 (467)
Q Consensus 53 ~~~l~~~~~~~~--~L~~L~l~~~~~~~~~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~----~---~~~~l~~-l~ 119 (467)
.+.+.+++.... +++.|.+...++ .+.. ....+..+ ...+++|+.|.+..... + ....+.. +.
T Consensus 94 ~~~~~~fl~~~~~~~v~~L~lg~~~~---~~~~-~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~ 169 (362)
T 2ra8_A 94 VNLMDKILKDKKLPSLKQITIGXWGY---EGED-CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD 169 (362)
T ss_dssp CCHHHHHHHCTTGGGCSEEEECCCCS---SSCC-SHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred HHHHHHHhcCCCchhcceEEEccccc---CCCc-HHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence 334555554442 577888764322 1111 11234444 24578999998854311 1 0112333 34
Q ss_pred cCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhc--ccccccccccccCCC--CChhhHHhh
Q 012255 120 SCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLG--KLERLEDLLIKNCRA--IGEGDLIKL 195 (467)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~--~~~~~~~~~ 195 (467)
.+|+|++|.+.++.++.... . ..++|++|.+..+ .++.. ....+. .+|+|++|++....+ ..+.++..+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~----~-~~~~L~~L~L~~~-~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK----K-PRPNLKSLEIISG-GLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS----C-BCTTCSEEEEECS-BCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred cCCCCcEEEEeCCCCceecc----c-cCCCCcEEEEecC-CCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 78999999998763332222 1 3788999999877 56554 334443 689999998853211 112111111
Q ss_pred ccCcccccccccccccccccccchhhhhhhhhhhcccCCCCcceeeccccCccCchhHHHHH--hcCCCCcEEEcccCcc
Q 012255 196 GPCWRKLKRLQFEVDVNYRYMKVYDRLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVL--GKCRNLEKIHLDMCVG 273 (467)
Q Consensus 196 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~--~~~~~L~~L~l~~~~~ 273 (467)
.+ + +. ...+|+|+.|++.++. +.+.....+. ..+|+|++|+++.+.
T Consensus 243 ~~-------~---------------------l~--~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~- 290 (362)
T 2ra8_A 243 RP-------L---------------------FS--KDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGV- 290 (362)
T ss_dssp GG-------G---------------------SC--TTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred HH-------H---------------------Hh--cCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCC-
Confidence 10 0 00 1246899999998776 3333333433 257889999998764
Q ss_pred cchhHHHHHH---HhCCCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 012255 274 VRDSDIINMA---QTSSKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISF 334 (467)
Q Consensus 274 ~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 334 (467)
+++.+...+. ..+++|+.|+++.| .+++.....+...+ ...++++.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n-------------~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYN-------------YLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSB-------------BCCHHHHHHHHHHC--CSEEECCS
T ss_pred CChHHHHHHHhhcccCCcceEEECCCC-------------cCCHHHHHHHHHHc--CCEEEecC
Confidence 8777766654 35789999999876 48888888888644 44566654
No 106
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.75 E-value=1.8e-09 Score=97.90 Aligned_cols=185 Identities=19% Similarity=0.164 Sum_probs=107.5
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCH
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTD 314 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 314 (467)
++++.|+++++. +..... ..+..+++|++|.++++. ++..... ..+++|++|+++++... .+.
T Consensus 31 ~~l~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~Ls~N~l~----------~l~- 93 (290)
T 1p9a_G 31 KDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVD---GTLPVLGTLDLSHNQLQ----------SLP- 93 (290)
T ss_dssp TTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECTTSC-CCEEECC---SCCTTCCEEECCSSCCS----------SCC-
T ss_pred CCCCEEEcCCCc-CCccCH-HHhhcCCCCCEEECCCCc-cCcccCC---CCCCcCCEEECCCCcCC----------cCc-
Confidence 567777777665 222211 224567778888877664 3321111 35677888888775411 111
Q ss_pred HHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCC
Q 012255 315 ESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQ 393 (467)
Q Consensus 315 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~ 393 (467)
.....+++|+.|++++ +.++.... ..+...+ |+.|+++++ .++......+..+++|+.|+++++
T Consensus 94 ----~~~~~l~~L~~L~l~~--------N~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N- 158 (290)
T 1p9a_G 94 ----LLGQTLPALTVLDVSF--------NRLTSLPL-GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN- 158 (290)
T ss_dssp ----CCTTTCTTCCEEECCS--------SCCCCCCS-STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred ----hhhccCCCCCEEECCC--------CcCcccCH-HHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-
Confidence 1112567888888876 33332110 1112344 888888875 333322223446789999999884
Q ss_pred CcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHH
Q 012255 394 EISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGA 453 (467)
Q Consensus 394 ~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l 453 (467)
.++......+.++++|+.|+++++ .++.. ...+...++|+.|++++++...+-.+..+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N-~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~~~l 216 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQEN-SLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEILYF 216 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCCCSEEECCSCCBCCSGGGHHH
T ss_pred cCCccCHHHhcCcCCCCEEECCCC-cCCcc-ChhhcccccCCeEEeCCCCccCcCccHHH
Confidence 555444444567899999999984 47642 22333477899999998885544333333
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.75 E-value=3.2e-09 Score=94.16 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=85.0
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCH
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTD 314 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 314 (467)
++++.|+++++. +..... ..+..+++|++|+++++. +..... .....+++|++|+++++. ++.
T Consensus 35 ~~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-------------l~~ 97 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSD-ATFRGLTKLTWLNLDYNQ-LQTLSA-GVFDDLTELGTLGLANNQ-------------LAS 97 (251)
T ss_dssp TTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-------------CCC
T ss_pred CCCCEEEccCCC-cCccCH-hHhcCcccCCEEECCCCc-CCccCH-hHhccCCcCCEEECCCCc-------------ccc
Confidence 567777777665 222111 123567777888777664 332111 112356777777777653 111
Q ss_pred HHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHHHHHHhCCCCCEEeecCCCC
Q 012255 315 ESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARCQE 394 (467)
Q Consensus 315 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~ 394 (467)
.... ....+++|++|++++ +.+ +......+..+++|+.|+++++ .
T Consensus 98 ~~~~-~~~~l~~L~~L~L~~--------N~l-------------------------~~~~~~~~~~l~~L~~L~Ls~N-~ 142 (251)
T 3m19_A 98 LPLG-VFDHLTQLDKLYLGG--------NQL-------------------------KSLPSGVFDRLTKLKELRLNTN-Q 142 (251)
T ss_dssp CCTT-TTTTCTTCCEEECCS--------SCC-------------------------CCCCTTTTTTCTTCCEEECCSS-C
T ss_pred cChh-HhcccCCCCEEEcCC--------CcC-------------------------CCcChhHhccCCcccEEECcCC-c
Confidence 1000 112456666666665 121 1111111234677777777764 4
Q ss_pred cCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 395 ISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 395 it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
++......+.++++|+.|+++++ .++......+..+++|+.|++++++
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 55433344556777777777773 4665555555557777778777776
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.72 E-value=3.3e-10 Score=99.82 Aligned_cols=182 Identities=15% Similarity=0.062 Sum_probs=108.1
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCH
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTD 314 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 314 (467)
++|+.|+++++. +....- ..+..+++|++|+++++..++..... ....+++|++|++++|.. ++.
T Consensus 31 ~~l~~L~l~~n~-l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~------------l~~ 95 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPS-HAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRN------------LTY 95 (239)
T ss_dssp TTCCEEEEESCC-CSEECT-TTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETT------------CCE
T ss_pred CcccEEEEeCCc-ceEECH-HHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCC------------eeE
Confidence 467777777654 222111 12356777888888766423211111 123567888888876332 221
Q ss_pred HHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-Cc---EeeccccccccHHHHHHHHhCCCCC-EEee
Q 012255 315 ESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VR---ELSLDYVYSFNDVGMEALCSAHYLE-ILEL 389 (467)
Q Consensus 315 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~---~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l 389 (467)
..... ...+++|++|+++++ .++.. .. +..++ |+ .|+++++..++......+..+++|+ .|++
T Consensus 96 i~~~~-f~~l~~L~~L~l~~n--------~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 96 IDPDA-LKELPLLKFLGIFNT--------GLKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp ECTTS-EECCTTCCEEEEEEE--------CCCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred cCHHH-hCCCCCCCEEeCCCC--------CCccc--cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 11011 125678888888763 22221 11 22334 66 8888876455443333455688999 9999
Q ss_pred cCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcC-CCCCeeccCCCCCCC
Q 012255 390 ARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGS-HKLDLLAVEDCPQVS 446 (467)
Q Consensus 390 ~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~-~~L~~L~l~~c~~~~ 446 (467)
+++ .++......+.. ++|+.|+++++..++......+..+ ++|+.|+++++. ++
T Consensus 164 ~~n-~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~ 218 (239)
T 2xwt_C 164 YNN-GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VT 218 (239)
T ss_dssp CSC-CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CC
T ss_pred CCC-CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cc
Confidence 884 555433333334 7899999999655887666667777 999999999985 54
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=1.1e-08 Score=94.77 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=83.1
Q ss_pred CCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHH
Q 012255 324 CRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQL 402 (467)
Q Consensus 324 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~ 402 (467)
..++..+.+.+ .+....+..+...|+ |+.+++.++ .++...-..+..|++|+.|++.+ .++..+-.+
T Consensus 201 ~~~~~~l~~~~---------~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~a 268 (329)
T 3sb4_A 201 PRDINFLTIEG---------KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRV 268 (329)
T ss_dssp GGGCSEEEEEE---------CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTT
T ss_pred ccccceEEEee---------eecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHH
Confidence 46778888865 466777777777888 999999984 34443444556799999999987 366666677
Q ss_pred hcCCCCCC-EEeecCCCCCCccchHhhhcCCCCCeeccCCC
Q 012255 403 ACQFPHLS-ILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDC 442 (467)
Q Consensus 403 l~~~~~L~-~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 442 (467)
+.+|++|+ .+.+.+ +++..+-.++..|++|+.+++.+.
T Consensus 269 F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 88999999 999998 688888888989999999999655
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.62 E-value=2.3e-08 Score=80.75 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=29.7
Q ss_pred hCCCCCEEeecCCCCcCHH-HHHHhcCCCCCCEEeecCCCCCCccch---HhhhcCCCCCeeccC
Q 012255 380 SAHYLEILELARCQEISDE-GLQLACQFPHLSILRLRKCLGVTDDGL---KPLVGSHKLDLLAVE 440 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~-~~~~l~~~~~L~~L~l~~c~~it~~~~---~~l~~~~~L~~L~l~ 440 (467)
.+++|+.|+++++ .+++. ....+.++++|+.|++++| .+++... ..+..+++|+.|+++
T Consensus 86 ~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 3555555555553 34432 2244455666666666663 3444332 233346666666554
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.58 E-value=4e-08 Score=79.37 Aligned_cols=83 Identities=20% Similarity=0.206 Sum_probs=48.5
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
..++|+.|+++++. +.+..+...+..+++|++|+++++. +... .....+++|++|+++++. +
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~-------------i 76 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNR-------------V 76 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSC-------------C
T ss_pred CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCc-------------c
Confidence 44678888888775 3322233334667888888888764 4432 223356777777777653 2
Q ss_pred CHHHHHHHHhcCCCCCeEEecc
Q 012255 313 TDESLKALADNCRMLESVRISF 334 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~ 334 (467)
+.. +......+++|+.|++++
T Consensus 77 ~~~-~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 77 SGG-LEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp CSC-THHHHHHCTTCCEEECTT
T ss_pred cch-HHHHhhhCCCCCEEECCC
Confidence 221 222333466777777766
No 112
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.56 E-value=1.7e-08 Score=91.40 Aligned_cols=178 Identities=17% Similarity=0.164 Sum_probs=119.5
Q ss_pred cCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCC
Q 012255 232 VPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLR 311 (467)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 311 (467)
..+++++.+++++.. ++.. +. .-.++++.|+++++. ++..... ....+++|++|+++++.
T Consensus 7 ~~l~~l~~l~~~~~~-l~~i--p~--~~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n~------------- 66 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTAL--PP--DLPKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRAE------------- 66 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSC--CS--CCCTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTSC-------------
T ss_pred cccCCccEEECCCCC-CCcC--CC--CCCCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCCc-------------
Confidence 356788888888754 2221 11 124689999999876 4432222 23478999999999865
Q ss_pred CCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeec
Q 012255 312 LTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELA 390 (467)
Q Consensus 312 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 390 (467)
++.... . ..+++|++|++++ +.++. +.......+ |+.|+++++ .++......+..+++|+.|+++
T Consensus 67 l~~~~~--~-~~l~~L~~L~Ls~--------N~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 67 LTKLQV--D-GTLPVLGTLDLSH--------NQLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp CCEEEC--C-SCCTTCCEEECCS--------SCCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECT
T ss_pred cCcccC--C-CCCCcCCEEECCC--------CcCCc--CchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECC
Confidence 222111 1 3689999999998 34332 111223455 999999996 4443322345578999999999
Q ss_pred CCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 391 RCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 391 ~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
++ .++......+.++++|+.|+++++ .++......+..+++|+.|+++++. ++
T Consensus 133 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~ 185 (290)
T 1p9a_G 133 GN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LY 185 (290)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CC-CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc-CC
Confidence 85 566544445668899999999994 5886555556668999999999996 55
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.56 E-value=2e-08 Score=83.01 Aligned_cols=61 Identities=23% Similarity=0.135 Sum_probs=26.9
Q ss_pred CCCCCEEeecCCCCcCHH-HHHHhcCCCCCCEEeecCCCCCCccch---HhhhcCCCCCeeccCCCC
Q 012255 381 AHYLEILELARCQEISDE-GLQLACQFPHLSILRLRKCLGVTDDGL---KPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 381 ~~~L~~L~l~~c~~it~~-~~~~l~~~~~L~~L~l~~c~~it~~~~---~~l~~~~~L~~L~l~~c~ 443 (467)
+++|+.|++++| .+++. .+..+.++++|+.|++++|. ++.... ..+..+++|+.|++++|.
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 444555555443 33331 12334445555555555532 433322 223335555555555553
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.51 E-value=4.1e-08 Score=87.00 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=14.2
Q ss_pred CCCEEeecCCCCCChHhHHHHhcCCCCceeeccC
Q 012255 98 YLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKF 131 (467)
Q Consensus 98 ~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~ 131 (467)
+++.|+++++ .++......+..+++|++|++++
T Consensus 36 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 36 DTEKLDLQST-GLATLSDATFRGLTKLTWLNLDY 68 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCEEEccCC-CcCccCHhHhcCcccCCEEECCC
Confidence 4445555444 33332222333445555555554
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=7.7e-08 Score=85.76 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=85.5
Q ss_pred CCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 233 PCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
.+++|+.|+++++. +.... -+..+++|++|+++++. +..... ...+++|++|+++++. +
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~L~~N~-i~~~~~---l~~l~~L~~L~L~~N~-------------l 97 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA---GMQFFTNLKELHLSHNQ-ISDLSP---LKDLTKLEELSVNRNR-------------L 97 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT---TGGGCTTCCEEECCSSC-CCCCGG---GTTCSSCCEEECCSSC-------------C
T ss_pred hcCcCcEEECcCCC-cccch---HHhhCCCCCEEECCCCc-cCCChh---hccCCCCCEEECCCCc-------------c
Confidence 45688888888775 33321 24667888888888775 443222 4567888888888764 2
Q ss_pred CHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecC
Q 012255 313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELAR 391 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 391 (467)
++. ..+. . ++|+.|++++ +.+++.. . ...++ |+.|+++++. +++. ..+..+++|+.|++++
T Consensus 98 ~~l--~~~~-~-~~L~~L~L~~--------N~l~~~~--~-l~~l~~L~~L~Ls~N~-i~~~--~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 98 KNL--NGIP-S-ACLSRLFLDN--------NELRDTD--S-LIHLKNLEILSIRNNK-LKSI--VMLGFLSKLEVLDLHG 159 (263)
T ss_dssp SCC--TTCC-C-SSCCEEECCS--------SCCSBSG--G-GTTCTTCCEEECTTSC-CCBC--GGGGGCTTCCEEECTT
T ss_pred CCc--Cccc-c-CcccEEEccC--------CccCCCh--h-hcCcccccEEECCCCc-CCCC--hHHccCCCCCEEECCC
Confidence 110 0111 1 6788888877 3333321 1 23344 7777777753 3332 2344677777777776
Q ss_pred CCCcCHHHHHHhcCCCCCCEEeecCCCCCCcc
Q 012255 392 CQEISDEGLQLACQFPHLSILRLRKCLGVTDD 423 (467)
Q Consensus 392 c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~ 423 (467)
+ .+++. ..+.++++|+.|+++++. ++..
T Consensus 160 N-~i~~~--~~l~~l~~L~~L~l~~N~-~~~~ 187 (263)
T 1xeu_A 160 N-EITNT--GGLTRLKKVNWIDLTGQK-CVNE 187 (263)
T ss_dssp S-CCCBC--TTSTTCCCCCEEEEEEEE-EECC
T ss_pred C-cCcch--HHhccCCCCCEEeCCCCc-ccCC
Confidence 3 44443 445567777777777643 4443
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.47 E-value=2.7e-08 Score=82.17 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=78.8
Q ss_pred cCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCC
Q 012255 232 VPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLR 311 (467)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 311 (467)
...++|+.|+++++. +.+..+...+..+++|+.|+++++. +... .....+++|++|+++++.
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~------------- 82 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR------------- 82 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-------------
T ss_pred CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-------------
Confidence 345788888888776 3322233334667788888888765 4432 223356777777777654
Q ss_pred CCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccH-HHHHHHHhCCCCCEEeec
Q 012255 312 LTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFND-VGMEALCSAHYLEILELA 390 (467)
Q Consensus 312 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~ 390 (467)
++.. +..+...+++|+.|++++ + .+++ ..+..+..+++|+.|+++
T Consensus 83 l~~~-~~~~~~~l~~L~~L~Ls~--------------------------------N-~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 83 IFGG-LDMLAEKLPNLTHLNLSG--------------------------------N-KLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp CCSC-CCHHHHHCTTCCEEECBS--------------------------------S-SCCSSGGGGGGSSCSCCCEEECC
T ss_pred CchH-HHHHHhhCCCCCEEeccC--------------------------------C-ccCcchhHHHHhcCCCCCEEEee
Confidence 2221 122333466777777766 2 2222 112334467888888888
Q ss_pred CCCCcCHHHH---HHhcCCCCCCEEeecCCC
Q 012255 391 RCQEISDEGL---QLACQFPHLSILRLRKCL 418 (467)
Q Consensus 391 ~c~~it~~~~---~~l~~~~~L~~L~l~~c~ 418 (467)
++ .++.... ..+..+++|+.|++++|.
T Consensus 129 ~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 129 NC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 75 3443332 456678888888888864
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=2e-07 Score=83.05 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=27.0
Q ss_pred CCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCC
Q 012255 96 CPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRC 158 (467)
Q Consensus 96 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 158 (467)
+++|+.|+++++ .+++. ..+..+++|++|+++++ .++... . +..+++|+.|+++++
T Consensus 40 l~~L~~L~l~~n-~i~~l--~~l~~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSL--AGMQFFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HTTCSEEECTTS-CCCCC--TTGGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSS
T ss_pred cCcCcEEECcCC-Ccccc--hHHhhCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCC
Confidence 455556665555 34332 23445555555555554 233221 1 335555555555555
No 118
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.43 E-value=1.1e-06 Score=73.20 Aligned_cols=121 Identities=13% Similarity=0.155 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhC----CCcEeeccccccccHHHHHHHH----hCCCCC
Q 012255 314 DESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKC----PVRELSLDYVYSFNDVGMEALC----SAHYLE 385 (467)
Q Consensus 314 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~----~L~~L~l~~~~~~~~~~~~~l~----~~~~L~ 385 (467)
+..+..+...-+.|++|++.+ ...+.+++...+++.. .|+.|+|+++ .++|.+...+. .-+.|+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~-------nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~ 101 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINN-------MKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLR 101 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTT-------CCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCC
T ss_pred HHHHHHHHhcCCCccEEECCC-------CCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccC
Confidence 345666666778999999976 1378888887776542 2999999986 67888876666 458899
Q ss_pred EEeecCCCCcCHHHHHHhc----CCCCCCEEeecCCC--CCCccchHhhhc----CCCCCeeccCCCC
Q 012255 386 ILELARCQEISDEGLQLAC----QFPHLSILRLRKCL--GVTDDGLKPLVG----SHKLDLLAVEDCP 443 (467)
Q Consensus 386 ~L~l~~c~~it~~~~~~l~----~~~~L~~L~l~~c~--~it~~~~~~l~~----~~~L~~L~l~~c~ 443 (467)
+|+|+. ..+++.+..+++ .-+.|+.|+++++. .+++.+...++. -++|+.|+++.+.
T Consensus 102 ~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 102 VLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp EEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred eEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 999988 688999988776 34569999998752 577776665554 7889999887653
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=5e-08 Score=92.63 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=51.7
Q ss_pred hCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCC
Q 012255 356 KCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKL 434 (467)
Q Consensus 356 ~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L 434 (467)
.|. |+.+.+... ++..+-.++..|.+|+.+++.. .++..+-.++.+|.+|+.+.+.. +++..+-.++..|++|
T Consensus 295 ~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINL 368 (394)
T ss_dssp TCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTC
T ss_pred ccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCC
Confidence 344 666666432 2222223344678888888864 35554556677888888888876 3777777777778888
Q ss_pred CeeccCC
Q 012255 435 DLLAVED 441 (467)
Q Consensus 435 ~~L~l~~ 441 (467)
+.+.+..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 8887754
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.35 E-value=8.7e-08 Score=82.94 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=34.6
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
.+++|+.|+++++ .++......+.++++|+.|++++ +.++......+..+++|+.|++++++
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 4556666666652 34433233444566666666666 34555444455556666666666665
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.33 E-value=6.4e-08 Score=91.67 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=41.8
Q ss_pred hCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcC-CC
Q 012255 356 KCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGS-HK 433 (467)
Q Consensus 356 ~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~-~~ 433 (467)
+|+ |+.+.+.. .++..+-.++..|++|+.+.+.. .++..+-.++.+| +|+.+.+.+. .+....-..+..+ .+
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDD 371 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTT
T ss_pred CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCC
Confidence 344 55555543 22222223344677777777754 3554444556667 7888777763 3443333333334 35
Q ss_pred CCeeccC
Q 012255 434 LDLLAVE 440 (467)
Q Consensus 434 L~~L~l~ 440 (467)
++.|.+.
T Consensus 372 l~~l~vp 378 (401)
T 4fdw_A 372 ITVIRVP 378 (401)
T ss_dssp CCEEEEC
T ss_pred ccEEEeC
Confidence 5666553
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.31 E-value=1.2e-07 Score=82.03 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 381 AHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 381 ~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+++|+.|+++++ .++......+.++++|+.|++++ +.++......+..+++|+.|++++++
T Consensus 103 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 LFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 455555555552 33333333444556666666666 33554444444445666666666655
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.30 E-value=1.7e-07 Score=80.32 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=21.7
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKC 417 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 417 (467)
.+++|+.|+++++ .++......+.++++|+.|+++++
T Consensus 122 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 122 KLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 4666777777663 444333333455667777777764
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.19 E-value=5.9e-08 Score=90.58 Aligned_cols=13 Identities=15% Similarity=-0.181 Sum_probs=9.0
Q ss_pred HhCCCCCEEeecC
Q 012255 379 CSAHYLEILELAR 391 (467)
Q Consensus 379 ~~~~~L~~L~l~~ 391 (467)
.++++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 3577788887754
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.19 E-value=1.2e-07 Score=88.78 Aligned_cols=161 Identities=17% Similarity=0.066 Sum_probs=88.7
Q ss_pred CCCcceeeccccCccCchhHHHHHh-cCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCC
Q 012255 234 CENMVELSLKNCIISPGRGLACVLG-KCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRL 312 (467)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (467)
.+.++.|++++.. +....... +. .+++|++|+++++. +...... .+..+++|++|+++++. +
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~-~~~~l~~L~~L~L~~N~-i~~i~~~-~~~~l~~L~~L~Ls~N~-------------l 100 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEW-TPTRLTNLHSLLLSHNH-LNFISSE-AFVPVPNLRYLDLSSNH-------------L 100 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTS-SSSCCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSC-------------C
T ss_pred CCCCCEEECCCCC-CCccChhh-hhhcccccCEEECCCCc-CCccChh-hccCCCCCCEEECCCCc-------------C
Confidence 3567778877754 33221111 22 56777777777654 3322111 12356677777776643 1
Q ss_pred CHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHHHHHHhCCCCCEEeecCC
Q 012255 313 TDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALCSAHYLEILELARC 392 (467)
Q Consensus 313 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c 392 (467)
+...-.. ...+++|+.|++++ + .++......+..+++|+.|+++++
T Consensus 101 ~~~~~~~-~~~l~~L~~L~L~~--------------------------------N-~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 101 HTLDEFL-FSDLQALEVLLLYN--------------------------------N-HIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CEECTTT-TTTCTTCCEEECCS--------------------------------S-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcCCHHH-hCCCcCCCEEECCC--------------------------------C-cccEECHHHhCCcccCCEEECCCC
Confidence 1110000 11455666666655 2 222211223345788888888874
Q ss_pred CCcCHHHHHHh---cCCCCCCEEeecCCCCCCccchHhhhcCCC--CCeeccCCCCCCCH
Q 012255 393 QEISDEGLQLA---CQFPHLSILRLRKCLGVTDDGLKPLVGSHK--LDLLAVEDCPQVSE 447 (467)
Q Consensus 393 ~~it~~~~~~l---~~~~~L~~L~l~~c~~it~~~~~~l~~~~~--L~~L~l~~c~~~~~ 447 (467)
.++......+ .++++|+.|++++ +.++......+..++. ++.|++.+++..-+
T Consensus 147 -~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 147 -QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp -CCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred -cCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 4554333333 4688999999998 4588766666666666 48889998874444
No 126
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.16 E-value=3e-05 Score=64.52 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=40.6
Q ss_pred CcEeeccccccccHHHHHHHH----hCCCCCEEeecCCCCcCHHHHHHhc----CCCCCCEEeecCCCCCCccchHhhhc
Q 012255 359 VRELSLDYVYSFNDVGMEALC----SAHYLEILELARCQEISDEGLQLAC----QFPHLSILRLRKCLGVTDDGLKPLVG 430 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~~l~----~~~~L~~L~l~~c~~it~~~~~~l~~ 430 (467)
|+.|+++++..+.+.+...++ .-..|+.|+|++| .++|.+..+++ .-+.|+.|+|++ +.|++.|...++.
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES-NFLTPELLARLLR 120 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHHHHHH
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHHHHHH
Confidence 444444443344444443333 1234444444442 34444443333 233444444444 2344444444433
Q ss_pred ----CCCCCeeccCCCC--CCCHHHHHHHHhhcc
Q 012255 431 ----SHKLDLLAVEDCP--QVSERGVQGAARSVS 458 (467)
Q Consensus 431 ----~~~L~~L~l~~c~--~~~~~~~~~l~~~~~ 458 (467)
-..|+.|+++++. .+.+.+.+++++.++
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~ 154 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE 154 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH
Confidence 2334444444331 244444444444333
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.16 E-value=5.4e-07 Score=78.46 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=16.8
Q ss_pred CCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 405 QFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 405 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
++++|+.|++++ +.++......+..+++|+.|++++++
T Consensus 133 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 344455555554 23443333333334455555555444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.16 E-value=5.6e-07 Score=74.81 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=42.3
Q ss_pred HhCCCCCEEeecCCCCcCHHH-HHHhcCCCCCCEEeecCCCCCCccchH---hhhcCCCCCeeccCCCC
Q 012255 379 CSAHYLEILELARCQEISDEG-LQLACQFPHLSILRLRKCLGVTDDGLK---PLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 379 ~~~~~L~~L~l~~c~~it~~~-~~~l~~~~~L~~L~l~~c~~it~~~~~---~l~~~~~L~~L~l~~c~ 443 (467)
..+++|+.|+++++ .+++.. +..+.++++|+.|++++++ ++...-. .+..+++|+.|+++++.
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 46788888888874 444432 3356678888888888854 5543222 24458888888888875
No 129
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.12 E-value=5.2e-07 Score=85.60 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=38.2
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDC 442 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 442 (467)
+..|.+|+.+.|.. .++..+-.++.+|.+|+.+.|.. +++..+-.++.+|.+|+.+.+.+.
T Consensus 307 F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 34566777777753 34444445556677777777765 366666666666777777776653
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.12 E-value=1.7e-07 Score=87.42 Aligned_cols=226 Identities=8% Similarity=0.009 Sum_probs=121.5
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
+++++|+++.... ..+...++ ..+++|++|+++++.-.+......+..+++|+++.+..+..++... ...
T Consensus 30 ~~l~~L~Ls~N~i-----~~i~~~~f----~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKL-----RVIQKGAF----SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEA 99 (350)
T ss_dssp TTCSEEEEESCCC-----SEECTTSS----TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTS
T ss_pred CCCCEEEccCCcC-----CCcCHHHH----cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chh
Confidence 5799999986543 12222212 5678999999988732232222334567777765555444554322 223
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhhh
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRLA 223 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 223 (467)
+..+++|+.|++.++ .+.... ........++..|++..+..+.......+......++.|.+...+-
T Consensus 100 f~~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i----------- 166 (350)
T 4ay9_X 100 FQNLPNLQYLLISNT-GIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI----------- 166 (350)
T ss_dssp BCCCTTCCEEEEEEE-CCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-----------
T ss_pred hhhcccccccccccc-ccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-----------
Confidence 457889999999887 343221 1112233456666665554444433222222223455555543321
Q ss_pred hhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCcc
Q 012255 224 VDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLP 303 (467)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 303 (467)
..++.......+|+.|.+.++..+....- ..+..+++|+.|+++++. ++.-.. ..+.+|++|.+..+..+.
T Consensus 167 -~~i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~lp~----~~~~~L~~L~~l~~~~l~-- 237 (350)
T 4ay9_X 167 -QEIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSLPS----YGLENLKKLRARSTYNLK-- 237 (350)
T ss_dssp -CEECTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCCCS----SSCTTCCEEECTTCTTCC--
T ss_pred -cCCChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCccCh----hhhccchHhhhccCCCcC--
Confidence 11111122456788888876543433211 224678899999998875 432211 235677777776654321
Q ss_pred ccccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 012255 304 ILMSNPLRLTDESLKALADNCRMLESVRISF 334 (467)
Q Consensus 304 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 334 (467)
.+. . ...+++|+.+++.+
T Consensus 238 -------~lP-----~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 -------KLP-----T-LEKLVALMEASLTY 255 (350)
T ss_dssp -------CCC-----C-TTTCCSCCEEECSC
T ss_pred -------cCC-----C-chhCcChhhCcCCC
Confidence 111 1 12577888888865
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=1.5e-07 Score=93.34 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=123.3
Q ss_pred cCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccc-----------hhHHHHHHHhCCCCCeee-eccCCC
Q 012255 232 VPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVR-----------DSDIINMAQTSSKLRSIS-LRVPSD 299 (467)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-----------~~~~~~~~~~~~~L~~L~-l~~~~~ 299 (467)
..+++|+.|++++.. + ..++.-++.|++|+.|+++++..+. ..........+++|+.|+ +....
T Consensus 346 ~~~~~L~~L~Ls~n~-L--~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-S--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY- 421 (567)
T ss_dssp STTTTSSSCCCCHHH-H--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-
T ss_pred ccCccceeccCChhh-H--HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-
Confidence 456788888888754 2 3466666788888888876542100 011122334556677776 22210
Q ss_pred CCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHH
Q 012255 300 FSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEAL 378 (467)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l 378 (467)
+..-. ...+.+..+..+. ...|+.|++++ +.++.. .. +...+ |+.|+++++ .++. ....+
T Consensus 422 ~~~L~----~l~l~~n~i~~l~--~~~L~~L~Ls~--------n~l~~l--p~-~~~l~~L~~L~Ls~N-~l~~-lp~~~ 482 (567)
T 1dce_A 422 LDDLR----SKFLLENSVLKME--YADVRVLHLAH--------KDLTVL--CH-LEQLLLVTHLDLSHN-RLRA-LPPAL 482 (567)
T ss_dssp HHHHH----HHHHHHHHHHHHH--HTTCSEEECTT--------SCCSSC--CC-GGGGTTCCEEECCSS-CCCC-CCGGG
T ss_pred cchhh----hhhhhcccccccC--ccCceEEEecC--------CCCCCC--cC-ccccccCcEeecCcc-cccc-cchhh
Confidence 00000 0001111222222 24799999988 344432 12 33445 999999986 3441 12355
Q ss_pred HhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccc-hHhhhcCCCCCeeccCCCCCCCHH--HHHHHHh
Q 012255 379 CSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDG-LKPLVGSHKLDLLAVEDCPQVSER--GVQGAAR 455 (467)
Q Consensus 379 ~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~-~~~l~~~~~L~~L~l~~c~~~~~~--~~~~l~~ 455 (467)
.++++|+.|+++++ .++.. ..+.++++|+.|+++++ .++... ...+..+++|+.|++++++ ++.. .+..+..
T Consensus 483 ~~l~~L~~L~Ls~N-~l~~l--p~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~ 557 (567)
T 1dce_A 483 AALRCLEVLQASDN-ALENV--DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAE 557 (567)
T ss_dssp GGCTTCCEEECCSS-CCCCC--GGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHH
T ss_pred hcCCCCCEEECCCC-CCCCC--cccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHH
Confidence 67999999999984 66653 36778999999999994 588765 6777779999999999996 5432 3444555
Q ss_pred hccccccc
Q 012255 456 SVSFRQDL 463 (467)
Q Consensus 456 ~~~~~~~l 463 (467)
.++.++.|
T Consensus 558 ~lp~L~~L 565 (567)
T 1dce_A 558 MLPSVSSI 565 (567)
T ss_dssp HCTTCSEE
T ss_pred HCcccCcc
Confidence 55555544
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.11 E-value=3.6e-07 Score=86.75 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=54.3
Q ss_pred CC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCC
Q 012255 357 CP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLD 435 (467)
Q Consensus 357 ~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~ 435 (467)
|+ ++.+..... .+.+. .+..+.+|+.+.+.. .++..+-.++.+|.+|+.+++.+ +++..+-.++..|.+|+
T Consensus 275 ~~~l~~~~~~~~-~i~~~---~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~ 346 (394)
T 4fs7_A 275 CSGLKKVIYGSV-IVPEK---TFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLS 346 (394)
T ss_dssp CTTCCEEEECSS-EECTT---TTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCC
T ss_pred ccccceeccCce-eeccc---ccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCC
Confidence 44 555554432 22222 234688999999964 45555556677899999999986 48888888888899999
Q ss_pred eeccCC
Q 012255 436 LLAVED 441 (467)
Q Consensus 436 ~L~l~~ 441 (467)
.+.+..
T Consensus 347 ~i~lp~ 352 (394)
T 4fs7_A 347 NINFPL 352 (394)
T ss_dssp EECCCT
T ss_pred EEEECc
Confidence 998853
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.10 E-value=2.6e-06 Score=74.07 Aligned_cols=59 Identities=25% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCC
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRC 158 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 158 (467)
++|+.|+++++ .++......+..+++|++|+++++ .++... ...+..+++|+.|+++++
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCC
Confidence 45555555554 333322223334455555555543 222111 111234455555555544
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.08 E-value=2.2e-06 Score=73.35 Aligned_cols=59 Identities=19% Similarity=0.077 Sum_probs=25.0
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCC
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRC 158 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 158 (467)
++|++|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC
Confidence 34555555554 333322222334555555555543 222111 111234455555555544
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.03 E-value=4.5e-07 Score=85.84 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=35.5
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDC 442 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 442 (467)
.|++|+.+.+.+ .++..+-.++.+|++|+.+.+.+ +++..+-.++..| +|+.+.+.++
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 466677777653 34444445555667777777755 3666555666666 6777766654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.00 E-value=1.4e-06 Score=73.87 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=6.6
Q ss_pred hcCCCCcEEEcccC
Q 012255 258 GKCRNLEKIHLDMC 271 (467)
Q Consensus 258 ~~~~~L~~L~l~~~ 271 (467)
..+++|++|+++++
T Consensus 137 ~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 137 AALDKLEDLLLAGN 150 (198)
T ss_dssp TTTTTCSEEEECSC
T ss_pred hcCCCCCEEEecCC
Confidence 34444555554443
No 137
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.97 E-value=1.5e-05 Score=78.75 Aligned_cols=166 Identities=15% Similarity=0.085 Sum_probs=85.6
Q ss_pred CCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCCCCCccccccCCCCCCH
Q 012255 235 ENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPSDFSLPILMSNPLRLTD 314 (467)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 314 (467)
++|+.|+++++. +.. ++ ..+++|++|+++++. ++... .+ ..+|++|+++++. ++.
T Consensus 80 ~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~N~-l~~ip--~l---~~~L~~L~Ls~N~-------------l~~ 134 (571)
T 3cvr_A 80 PQITVLEITQNA-LIS--LP---ELPASLEYLDACDNR-LSTLP--EL---PASLKHLDVDNNQ-------------LTM 134 (571)
T ss_dssp TTCSEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSCCC--CC---CTTCCEEECCSSC-------------CSC
T ss_pred CCCCEEECcCCC-Ccc--cc---cccCCCCEEEccCCC-CCCcc--hh---hcCCCEEECCCCc-------------CCC
Confidence 566777776654 222 11 345677777777654 33211 11 1267777777653 211
Q ss_pred HHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCC
Q 012255 315 ESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQ 393 (467)
Q Consensus 315 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~ 393 (467)
+.. .+++|+.|++++ +.++... ...+ |+.|+++++. ++.... +. ++|+.|+++++
T Consensus 135 --lp~---~l~~L~~L~Ls~--------N~l~~lp-----~~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N- 190 (571)
T 3cvr_A 135 --LPE---LPALLEYINADN--------NQLTMLP-----ELPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTN- 190 (571)
T ss_dssp --CCC---CCTTCCEEECCS--------SCCSCCC-----CCCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSS-
T ss_pred --CCC---cCccccEEeCCC--------CccCcCC-----CcCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCC-
Confidence 001 356777777766 3333211 1233 7777777753 222111 22 67888888774
Q ss_pred CcCHHHHHHhcC-----CCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCCHHHHHHHH
Q 012255 394 EISDEGLQLACQ-----FPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVSERGVQGAA 454 (467)
Q Consensus 394 ~it~~~~~~l~~-----~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~l~ 454 (467)
.++.... +.+ .+.|+.|+++++ .++.. ...+..+++|+.|++++|+ ++......+.
T Consensus 191 ~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~ 251 (571)
T 3cvr_A 191 LLESLPA--VPVRNHHSEETEIFFRCREN-RITHI-PENILSLDPTCTIILEDNP-LSSRIRESLS 251 (571)
T ss_dssp CCSSCCC--CC--------CCEEEECCSS-CCCCC-CGGGGGSCTTEEEECCSSS-CCHHHHHHHH
T ss_pred CCCchhh--HHHhhhcccccceEEecCCC-cceec-CHHHhcCCCCCEEEeeCCc-CCCcCHHHHH
Confidence 4442111 222 122388888884 46642 2234447888888888886 6665444433
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.96 E-value=2.4e-06 Score=72.40 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=24.5
Q ss_pred HHhcCCCCcEEEcccCcccchhHHHHHHHhCCCCCeeeeccCC
Q 012255 256 VLGKCRNLEKIHLDMCVGVRDSDIINMAQTSSKLRSISLRVPS 298 (467)
Q Consensus 256 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (467)
.+..+++|++|+++++. +.... ....+++|++|+++++.
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~---~~~~l~~L~~L~l~~n~ 81 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS---SLSGMENLRILSLGRNL 81 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC---CHHHHTTCCEEEEEEEE
T ss_pred HHhcCCCCCEEECCCCC-Ccccc---ccccCCCCCEEECCCCC
Confidence 45667888888887764 43321 22356777777777654
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=4.3e-07 Score=90.01 Aligned_cols=122 Identities=14% Similarity=0.206 Sum_probs=81.5
Q ss_pred CCCCeeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeecc
Q 012255 287 SKLRSISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLD 365 (467)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~ 365 (467)
..|+.|+++++. ++. +..+ ..+++|+.|++++ +.++. +...+...+ |+.|+++
T Consensus 441 ~~L~~L~Ls~n~-------------l~~--lp~~-~~l~~L~~L~Ls~--------N~l~~--lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 441 ADVRVLHLAHKD-------------LTV--LCHL-EQLLLVTHLDLSH--------NRLRA--LPPALAALRCLEVLQAS 494 (567)
T ss_dssp TTCSEEECTTSC-------------CSS--CCCG-GGGTTCCEEECCS--------SCCCC--CCGGGGGCTTCCEEECC
T ss_pred cCceEEEecCCC-------------CCC--CcCc-cccccCcEeecCc--------ccccc--cchhhhcCCCCCEEECC
Confidence 468899998864 222 1122 3678999999987 34441 111233455 9999999
Q ss_pred ccccccHHHHHHHHhCCCCCEEeecCCCCcCHHH-HHHhcCCCCCCEEeecCCCCCCcc--chHhhhc-CCCCCeecc
Q 012255 366 YVYSFNDVGMEALCSAHYLEILELARCQEISDEG-LQLACQFPHLSILRLRKCLGVTDD--GLKPLVG-SHKLDLLAV 439 (467)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~-~~~l~~~~~L~~L~l~~c~~it~~--~~~~l~~-~~~L~~L~l 439 (467)
++ .++. +..+..+++|+.|+++++ .++... ...+.++++|+.|+++++ .++.. ....+.. +|+|+.|++
T Consensus 495 ~N-~l~~--lp~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 495 DN-ALEN--VDGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SS-CCCC--CGGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CC-CCCC--CcccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 86 3443 225668999999999984 666654 566778999999999995 46653 2333333 899998854
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.95 E-value=4.4e-06 Score=69.32 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=81.3
Q ss_pred CCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHH
Q 012255 324 CRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQL 402 (467)
Q Consensus 324 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~ 402 (467)
+++|+.|+++++ .++.. ..+....+ |+.|+++++ .+++. ..+..+++|+.|+++++ .++......
T Consensus 18 ~~~L~~L~l~~n--------~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~ 83 (176)
T 1a9n_A 18 AVRDRELDLRGY--------KIPVI--ENLGATLDQFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGL 83 (176)
T ss_dssp TTSCEEEECTTS--------CCCSC--CCGGGGTTCCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSS-CCCEECSCH
T ss_pred cCCceEEEeeCC--------CCchh--HHhhhcCCCCCEEECCCC-CCCcc--cccccCCCCCEEECCCC-cccccCcch
Confidence 567778887763 33321 22344454 888888886 34432 34457899999999995 566433233
Q ss_pred hcCCCCCCEEeecCCCCCCccc-hHhhhcCCCCCeeccCCCCCCCHH--HHHHHHhhccccccc
Q 012255 403 ACQFPHLSILRLRKCLGVTDDG-LKPLVGSHKLDLLAVEDCPQVSER--GVQGAARSVSFRQDL 463 (467)
Q Consensus 403 l~~~~~L~~L~l~~c~~it~~~-~~~l~~~~~L~~L~l~~c~~~~~~--~~~~l~~~~~~~~~l 463 (467)
+.++++|+.|+++++ .+++.. +..+..+++|+.|++++|+ ++.. ....+...++.++.|
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence 467899999999995 576633 3456679999999999997 5431 223345566666554
No 141
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.90 E-value=1.8e-06 Score=75.33 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=36.0
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhhccce
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLS 42 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~ 42 (467)
|++||+||+.+||+||+ ++|+++++.|||+|+.+......|
T Consensus 5 l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D~~LW 45 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRDPILW 45 (312)
T ss_dssp HHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTCHHHH
T ss_pred hHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhccchHH
Confidence 36799999999999996 999999999999999997665444
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.89 E-value=7.6e-06 Score=68.96 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=59.4
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
|+.|+++++ .++......+..+++|+.|++++ ..++......+.++++|+.|++++ +.++......+..+++|+.|+
T Consensus 56 L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 56 LTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCC-cCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEE
Confidence 666666664 33332223345688899999988 456655555677889999999998 458866555566688999999
Q ss_pred cCCCCCCC
Q 012255 439 VEDCPQVS 446 (467)
Q Consensus 439 l~~c~~~~ 446 (467)
+++++...
T Consensus 133 L~~N~~~C 140 (193)
T 2wfh_A 133 IGANPLYC 140 (193)
T ss_dssp CCSSCEEC
T ss_pred eCCCCeec
Confidence 99887443
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.87 E-value=3e-06 Score=71.41 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=60.3
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
|++|+++++ .++......+..+++|+.|++++ ..++......+.++++|+.|++++ +.++......+..+++|+.|+
T Consensus 56 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 56 LVKLELKRN-QLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEE
T ss_pred CCEEECCCC-CCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEE
Confidence 777777764 33333233455688899999988 466655445566789999999998 458876666676788999999
Q ss_pred cCCCCCC
Q 012255 439 VEDCPQV 445 (467)
Q Consensus 439 l~~c~~~ 445 (467)
+++++..
T Consensus 133 L~~N~l~ 139 (192)
T 1w8a_A 133 LASNPFN 139 (192)
T ss_dssp CTTCCBC
T ss_pred eCCCCcc
Confidence 9988743
No 144
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.86 E-value=3e-05 Score=76.55 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=6.0
Q ss_pred CCCCcEEEcccC
Q 012255 260 CRNLEKIHLDMC 271 (467)
Q Consensus 260 ~~~L~~L~l~~~ 271 (467)
+++|++|+++++
T Consensus 159 l~~L~~L~Ls~N 170 (571)
T 3cvr_A 159 PTSLEVLSVRNN 170 (571)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCcCEEECCCC
Confidence 345555555544
No 145
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.83 E-value=2.8e-06 Score=79.44 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=51.1
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhh---hcCCCCCeeccCCCCCCCH
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPL---VGSHKLDLLAVEDCPQVSE 447 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l---~~~~~L~~L~l~~c~~~~~ 447 (467)
+..+++|+.|+++++ .++......+.++++|+.|+++++ .++......+ ..+++|+.|+++++. ++.
T Consensus 108 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 177 (361)
T 2xot_A 108 FSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKK 177 (361)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCC
T ss_pred hCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCc
Confidence 446899999999994 666554556778999999999994 5877555544 448999999999995 554
No 146
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.81 E-value=6.8e-06 Score=70.89 Aligned_cols=87 Identities=20% Similarity=0.268 Sum_probs=64.9
Q ss_pred hCC-CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCC
Q 012255 356 KCP-VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKL 434 (467)
Q Consensus 356 ~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L 434 (467)
..+ |+.|+++++ .++......+..+++|+.|+++++ .++......+.++++|+.|++++ +.++......+..+++|
T Consensus 55 ~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 55 KLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSV 131 (220)
T ss_dssp GCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTC
T ss_pred cCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccC
Confidence 344 777777775 344333334557899999999984 66655555677899999999999 45887766777779999
Q ss_pred CeeccCCCCCCC
Q 012255 435 DLLAVEDCPQVS 446 (467)
Q Consensus 435 ~~L~l~~c~~~~ 446 (467)
+.|+++++. ++
T Consensus 132 ~~L~L~~N~-l~ 142 (220)
T 2v70_A 132 RLLSLYDNQ-IT 142 (220)
T ss_dssp SEEECTTSC-CC
T ss_pred CEEECCCCc-CC
Confidence 999999995 44
No 147
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.76 E-value=7.6e-06 Score=70.58 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=62.4
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
|+.|+++++ .++......+..+++|+.|+++++ .++......+.++++|+.|++++ +.++......+..+++|+.|+
T Consensus 58 L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 58 LRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEE
Confidence 667777664 333332334557899999999984 66654444566899999999999 468887777777799999999
Q ss_pred cCCCCCCC
Q 012255 439 VEDCPQVS 446 (467)
Q Consensus 439 l~~c~~~~ 446 (467)
++++. ++
T Consensus 135 L~~N~-l~ 141 (220)
T 2v9t_B 135 LYDNK-LQ 141 (220)
T ss_dssp CCSSC-CS
T ss_pred CCCCc-CC
Confidence 99996 44
No 148
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.76 E-value=5.8e-06 Score=73.14 Aligned_cols=37 Identities=22% Similarity=0.498 Sum_probs=33.8
Q ss_pred CCCCchHHHHHHHccCCCcchhh-HHHHhhhHHHhhhhh
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRN-SASLACKRFYEVDNE 38 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~-~~~~vck~w~~~~~~ 38 (467)
+..||+|++.+||.+|| .++++ ++++|||+|+.+...
T Consensus 51 ~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 51 LAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp TTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTS
T ss_pred hhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcC
Confidence 46899999999999998 99999 999999999999554
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.71 E-value=1.3e-05 Score=75.98 Aligned_cols=308 Identities=12% Similarity=0.173 Sum_probs=143.4
Q ss_pred CccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCC--CCCChHhHHHHhcCCCCceeeccCCCCCChhhHHH
Q 012255 65 NLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYC--TFITDVGLCYLASCLNLSTLKLKFTTRITGCGILS 142 (467)
Q Consensus 65 ~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~ 142 (467)
.|+++.+.-. -..+.+.++ ..|.+|+.+.+... ..++..+-.++..|.+|+.+.+.. .++..+ ..
T Consensus 65 ~L~sI~iP~s------vt~Ig~~AF----~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~-~~ 131 (394)
T 4gt6_A 65 VLTSVQIPDT------VTEIGSNAF----YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEID-SE 131 (394)
T ss_dssp CCCEEEECTT------CCEECTTTT----TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEEC-TT
T ss_pred cCEEEEECCC------eeEEhHHHh----hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceeh-hh
Confidence 5888888521 122333322 67899999988543 234554445566788888888764 333322 22
Q ss_pred HHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccchhhh
Q 012255 143 VVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVYDRL 222 (467)
Q Consensus 143 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 222 (467)
.+..|.+|+.+.+... +... ....+..|..|+.+.+.. .+...+-..+ ...+|+++.+...... .. .
T Consensus 132 aF~~c~~L~~i~lp~~--~~~I-~~~~F~~c~~L~~i~~~~--~~~~I~~~aF--~~~~l~~i~ip~~~~~--i~---~- 198 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG--VTSV-ADGMFSYCYSLHTVTLPD--SVTAIEERAF--TGTALTQIHIPAKVTR--IG---T- 198 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTT--TTCCCSEEEECTTCCE--EC---T-
T ss_pred hhhhhcccccccccce--eeee-cccceecccccccccccc--eeeEeccccc--cccceeEEEECCcccc--cc---c-
Confidence 3457888998888643 1111 123456677787777653 2332222222 1234555554322100 00 0
Q ss_pred hhhhhhhcccCCCCcceeeccccCccCchhH--H-------HH--HhcCCCCcEEEcccCc-ccchhHHHHHHHhCCCCC
Q 012255 223 AVDRWQRQRVPCENMVELSLKNCIISPGRGL--A-------CV--LGKCRNLEKIHLDMCV-GVRDSDIINMAQTSSKLR 290 (467)
Q Consensus 223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l--~-------~l--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~ 290 (467)
..+..|.+++............... . .+ ......+..+.+...- .+... .+.+|.+|+
T Consensus 199 ------~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~----aF~~c~~L~ 268 (394)
T 4gt6_A 199 ------NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETH----AFDSCAYLA 268 (394)
T ss_dssp ------TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTT----TTTTCSSCC
T ss_pred ------chhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccc----eeeeccccc
Confidence 0023444444443322110000000 0 00 0011223333332210 01111 123556666
Q ss_pred eeeeccCCCCCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCC-CcEeecccccc
Q 012255 291 SISLRVPSDFSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCP-VRELSLDYVYS 369 (467)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~ 369 (467)
.+.+... +...+-.++ ..|++|+.+.+... ...+.+. .+.+|. |+++.|...
T Consensus 269 ~i~lp~~--------------~~~I~~~aF-~~c~~L~~i~l~~~------i~~I~~~----aF~~c~~L~~i~lp~~-- 321 (394)
T 4gt6_A 269 SVKMPDS--------------VVSIGTGAF-MNCPALQDIEFSSR------ITELPES----VFAGCISLKSIDIPEG-- 321 (394)
T ss_dssp EEECCTT--------------CCEECTTTT-TTCTTCCEEECCTT------CCEECTT----TTTTCTTCCEEECCTT--
T ss_pred EEecccc--------------cceecCccc-ccccccccccCCCc------ccccCce----eecCCCCcCEEEeCCc--
Confidence 6665431 111111111 14666666666431 1112221 123455 777766431
Q ss_pred ccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCC
Q 012255 370 FNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVED 441 (467)
Q Consensus 370 ~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~ 441 (467)
++..+-.++..|.+|+++.|.. .++..+-.++.+|++|+.+++.+. .. ....+..+.+|+.+.+..
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~--~~--~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS--RS--QWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC--HH--HHHTCBCCCCC-------
T ss_pred ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc--ee--ehhhhhccCCCCEEEeCC
Confidence 2222223445788999999964 455555567778999999998872 11 234444578888877643
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.67 E-value=1.5e-05 Score=66.01 Aligned_cols=84 Identities=14% Similarity=0.036 Sum_probs=57.2
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
|+.|+++++ .++......+..+++|+.|+++++ .++......+.++++|+.|+++++ .++......+..+++|+.|+
T Consensus 54 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 54 LTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred ccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEE
Confidence 666666664 333222222346889999999884 566544444567899999999984 57765554455688999999
Q ss_pred cCCCCCC
Q 012255 439 VEDCPQV 445 (467)
Q Consensus 439 l~~c~~~ 445 (467)
+++++..
T Consensus 131 l~~N~~~ 137 (177)
T 2o6r_A 131 LHTNPWD 137 (177)
T ss_dssp CCSSCBC
T ss_pred ecCCCee
Confidence 9999743
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=1.4e-05 Score=75.29 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=26.6
Q ss_pred HhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCC
Q 012255 379 CSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSH 432 (467)
Q Consensus 379 ~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~ 432 (467)
.+|.+|+.+.+.. .++..+-.++.+|.+|+.+.+.. +++..+-.++..|+
T Consensus 307 ~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c~ 356 (379)
T 4h09_A 307 MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTSS
T ss_pred cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCCC
Confidence 3566666666643 34433344555666666666654 35555555554443
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.45 E-value=6.3e-05 Score=62.25 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHH
Q 012255 64 GNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSV 143 (467)
Q Consensus 64 ~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~ 143 (467)
++|++|++++.... .+... ....+++|++|+++++ .++......+..+++|++|+++++ .++... ...
T Consensus 28 ~~l~~L~l~~n~l~-----~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~ 95 (177)
T 2o6r_A 28 SSATRLELESNKLQ-----SLPHG----VFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLP-NGV 95 (177)
T ss_dssp TTCSEEECCSSCCC-----CCCTT----TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTT
T ss_pred CCCcEEEeCCCccc-----EeCHH----HhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccC-HHH
Confidence 57888888765431 12221 1145688888888877 555433334557788888888875 343221 122
Q ss_pred HhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCC
Q 012255 144 VVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCR 185 (467)
Q Consensus 144 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 185 (467)
+..+++|+.|++.++ .+... ....+..+++|+.|++.+++
T Consensus 96 ~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 FDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred hhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCCC
Confidence 346788888888877 44432 22334567788888887653
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.39 E-value=8e-05 Score=61.14 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=45.1
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+..+++|+.|++++ +.++......+.++++|+.|++++ +.++......+..+++|+.|++++++
T Consensus 50 ~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 50 FDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 34577888888887 355544434456788888888888 45776555556667888888888886
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.25 E-value=0.00015 Score=59.73 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=44.3
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+..+++|+.|+++++ .++......+.++++|+.|++++ +.++......+..+++|+.|++++++
T Consensus 53 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred hcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCC
Confidence 345778888888873 55543333455778888888888 45775544445567888888888886
No 155
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.17 E-value=0.00032 Score=58.90 Aligned_cols=83 Identities=25% Similarity=0.231 Sum_probs=61.1
Q ss_pred CcEeeccccccccHHHHHHHHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeec
Q 012255 359 VRELSLDYVYSFNDVGMEALCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLA 438 (467)
Q Consensus 359 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~ 438 (467)
++.|+++++ .++... ..+..+++|+.|++++ ..++......+.++++|+.|++++ +.++......+..+++|+.|+
T Consensus 33 l~~L~L~~n-~i~~ip-~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 33 VTELYLDGN-QFTLVP-KELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CCEEECCSS-CCCSCC-GGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCC-cCchhH-HHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEE
Confidence 455555543 222111 2455789999999998 466665555677899999999999 568887777777899999999
Q ss_pred cCCCCCCC
Q 012255 439 VEDCPQVS 446 (467)
Q Consensus 439 l~~c~~~~ 446 (467)
++++. ++
T Consensus 109 L~~N~-l~ 115 (193)
T 2wfh_A 109 LHGND-IS 115 (193)
T ss_dssp CCSSC-CC
T ss_pred CCCCC-CC
Confidence 99996 55
No 156
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.14 E-value=8.1e-05 Score=71.94 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=32.8
Q ss_pred CCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhh
Q 012255 2 DTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNE 38 (467)
Q Consensus 2 ~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~ 38 (467)
..||+|++.+||+||+ .++++++++|||+|+++...
T Consensus 16 ~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred HHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 4699999999999996 99999999999999998554
No 157
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.01 E-value=0.00047 Score=70.56 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=36.0
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
+..+++|+.|+|+++ .++. ....+.++++|+.|+++++ .++.. ...+..+++|+.|++++|+ ++
T Consensus 266 ~~~l~~L~~L~Ls~N-~l~~-lp~~~~~l~~L~~L~L~~N-~l~~l-p~~~~~l~~L~~L~L~~N~-l~ 329 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHN-RLTS-LPAELGSCFQLKYFYFFDN-MVTTL-PWEFGNLCNLQFLGVEGNP-LE 329 (727)
T ss_dssp GGGGTTCCEEECTTS-CCSS-CCSSGGGGTTCSEEECCSS-CCCCC-CSSTTSCTTCCCEECTTSC-CC
T ss_pred hhCCCCCCEEeCcCC-cCCc-cChhhcCCCCCCEEECCCC-CCCcc-ChhhhcCCCccEEeCCCCc-cC
Confidence 345666777777663 3441 1223445667777777764 35532 2224456677777777775 44
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.00 E-value=0.00014 Score=68.38 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=141.7
Q ss_pred hCCCccEEEeecccccccCCCCCCHHHHHHHHhhCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHH
Q 012255 62 RFGNLTKVEISYAGWMSRLGKQLDDQGLLILSNSCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGIL 141 (467)
Q Consensus 62 ~~~~L~~L~l~~~~~~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~ 141 (467)
...+|+++.+.-. . ..+.+.++ ..|.+|+++++.. .++..+-.++..| +|+.+.+.. .++..+-
T Consensus 44 ~~~~i~~v~ip~~-v-----t~Ig~~aF----~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~- 107 (379)
T 4h09_A 44 DRDRISEVRVNSG-I-----TSIGEANF----NSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGD- 107 (379)
T ss_dssp GGGGCSEEEECTT-E-----EEECTTTT----TTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECT-
T ss_pred cccCCEEEEeCCC-c-----cChHHHHh----hCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEecc-
Confidence 3457888888521 1 12333222 6789999999965 3555444455556 577777653 2332221
Q ss_pred HHHhcCCCCcEEeccCCcccCchHHHHHhcccccccccccccCCCCChhhHHhhccCcccccccccccccccccccch-h
Q 012255 142 SVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERLEDLLIKNCRAIGEGDLIKLGPCWRKLKRLQFEVDVNYRYMKVY-D 220 (467)
Q Consensus 142 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 220 (467)
..+..+ +|+.+.+........ ...+..+ +|+.+.+.. .++..+. ..+..+..++.+.+............ .
T Consensus 108 ~aF~~~-~L~~i~lp~~~~~i~---~~~F~~~-~l~~~~~~~--~v~~i~~-~~f~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (379)
T 4h09_A 108 YVFQGT-DLDDFEFPGATTEIG---NYIFYNS-SVKRIVIPK--SVTTIKD-GIGYKAENLEKIEVSSNNKNYVAENYVL 179 (379)
T ss_dssp TTTTTC-CCSEEECCTTCCEEC---TTTTTTC-CCCEEEECT--TCCEECS-CTTTTCTTCCEEEECTTCSSEEEETTEE
T ss_pred ceeccC-CcccccCCCcccccc---ccccccc-eeeeeeccc--eeecccc-chhcccccccccccccccceeeccccee
Confidence 122234 788888865311111 1122222 344443322 1221111 11233344444443322111110000 0
Q ss_pred hhhhhhhhhcccCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCc-ccchhHHHHHHHhCCCCCeeeeccCCC
Q 012255 221 RLAVDRWQRQRVPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCV-GVRDSDIINMAQTSSKLRSISLRVPSD 299 (467)
Q Consensus 221 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~ 299 (467)
.............+.++..+.+........ ......+.+|+.+.+...- .+... ...++.+|+.+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~f~~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~--- 249 (379)
T 4h09_A 180 YNKNKTILESYPAAKTGTEFTIPSTVKTVT---AYGFSYGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPK--- 249 (379)
T ss_dssp EETTSSEEEECCTTCCCSEEECCTTCCEEC---TTTTTTCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECT---
T ss_pred cccccceeccccccccccccccccceeEEe---ecccccccccceeeeccceeEEccc----cccCCccceEEEcCC---
Confidence 000000000123445555555543221111 1112456777777775431 11111 123677888887764
Q ss_pred CCccccccCCCCCCHHHHHHHHhcCCCCCeEEecccCCCCCccccccHHHHHHHHHhCCCcEeeccccccccHHHHHHHH
Q 012255 300 FSLPILMSNPLRLTDESLKALADNCRMLESVRISFSDGEFPSISSFTLDGILTLIQKCPVRELSLDYVYSFNDVGMEALC 379 (467)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 379 (467)
.++..+-.++ ..|.+|+.+.+.. . ++.+ +...+.
T Consensus 250 -----------~v~~I~~~aF-~~~~~l~~i~l~~---------~--------------i~~i-----------~~~aF~ 283 (379)
T 4h09_A 250 -----------NVTSIGSFLL-QNCTALKTLNFYA---------K--------------VKTV-----------PYLLCS 283 (379)
T ss_dssp -----------TCCEECTTTT-TTCTTCCEEEECC---------C--------------CSEE-----------CTTTTT
T ss_pred -----------CccEeCcccc-ceeehhccccccc---------c--------------ceec-----------cccccc
Confidence 2221111111 1566777777743 0 1111 112233
Q ss_pred hCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccC
Q 012255 380 SAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVE 440 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~ 440 (467)
.|++|+.+.+.+ ..++..+-.++.+|.+|+.+.+.. +++..+-.++..|.+|+.+.+.
T Consensus 284 ~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 577888888865 234444445667888888888876 4777777777778888888774
No 159
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.96 E-value=0.00019 Score=68.84 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=34.4
Q ss_pred CCCchH----HHHHHHccCCCcchhhHHHHhhhHHHhhhhhccce
Q 012255 2 DTLPDH----LVWEILGRIKKTVDRNSASLACKRFYEVDNEQRLS 42 (467)
Q Consensus 2 ~~LP~e----ll~~If~~L~~~~~~~~~~~vck~w~~~~~~~~~~ 42 (467)
..||+| |+.+||+||+ .++++++++|||+|+.+......|
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~w 55 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSDGMLW 55 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred HHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcChHHH
Confidence 469999 9999999996 999999999999999986554433
No 160
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.95 E-value=0.00036 Score=58.47 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=54.1
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
+..+++|+.|++++ ..++......+.++++|+.|++++ +.++......+..+++|+.|+++++. ++
T Consensus 50 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~ 115 (192)
T 1w8a_A 50 FGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDNQ-IS 115 (192)
T ss_dssp GGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSSC-CC
T ss_pred cccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCc-CC
Confidence 45689999999999 466665456677899999999999 56888776667779999999999996 55
No 161
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.95 E-value=0.00026 Score=68.03 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=33.6
Q ss_pred CCCCchHHHHHHHccCCCcchhhHHHHhhhHHHhhhhh
Q 012255 1 MDTLPDHLVWEILGRIKKTVDRNSASLACKRFYEVDNE 38 (467)
Q Consensus 1 i~~LP~ell~~If~~L~~~~~~~~~~~vck~w~~~~~~ 38 (467)
|..||+|++.+||+||+ .+++++++.|||+|+.+...
T Consensus 19 ~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp TTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred hHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcCc
Confidence 56899999999999996 99999999999999998543
No 162
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.72 E-value=0.00053 Score=56.16 Aligned_cols=83 Identities=20% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++|++|+++++ .++......+..+++|++|+++++ .++... ...+..+++|++|++.++ .+... ....+..+++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDN-QLKSI-PRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCC-ccCEe-CHHHhcCCCCC
Confidence 45566666554 344332233445566666666654 333211 112235566666666655 33321 11234455566
Q ss_pred cccccccC
Q 012255 177 EDLLIKNC 184 (467)
Q Consensus 177 ~~L~l~~~ 184 (467)
+.|++.+.
T Consensus 105 ~~L~L~~N 112 (170)
T 3g39_A 105 THIWLLNN 112 (170)
T ss_dssp CEEECCSS
T ss_pred CEEEeCCC
Confidence 66666543
No 163
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.68 E-value=0.00041 Score=70.94 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=36.4
Q ss_pred hCCCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccc
Q 012255 95 SCPYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLE 174 (467)
Q Consensus 95 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 174 (467)
.+++|+.|+++++ .+.... ..+..+++|++|+|+++ .++ .++..+..+++|+.|+|+++ .+.. +...+..++
T Consensus 222 ~l~~L~~L~Ls~n-~l~~l~-~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~ 293 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFNIS-ANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLTS--LPAELGSCF 293 (727)
T ss_dssp CCCCCCEEECTTS-CCSCCC-GGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCSS--CCSSGGGGT
T ss_pred cCCCCcEEECCCC-CCCCCC-hhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCCc--cChhhcCCC
Confidence 3455555555554 232110 11224555555555554 232 11222234555555555555 3331 233344555
Q ss_pred cccccccccC
Q 012255 175 RLEDLLIKNC 184 (467)
Q Consensus 175 ~L~~L~l~~~ 184 (467)
+|+.|+++++
T Consensus 294 ~L~~L~L~~N 303 (727)
T 4b8c_D 294 QLKYFYFFDN 303 (727)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEECCCC
Confidence 5555555544
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.67 E-value=0.00059 Score=56.10 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=42.4
Q ss_pred CCCCEEeecCCCCCChHhHHHHhcCCCCceeeccCCCCCChhhHHHHHhcCCCCcEEeccCCcccCchHHHHHhcccccc
Q 012255 97 PYLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKFTTRITGCGILSVVVGCKNLTVLHLIRCLNVNSVEWLEYLGKLERL 176 (467)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 176 (467)
++|+.|+++++ .++......+..+++|++|+++++ .++... ...+..+++|+.|++.++ .+... ....+..+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDN-HLKSI-PRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCC-cccee-CHHHhccccCC
Confidence 56666666655 444432333445666666666654 333211 112235666666666665 33322 11234556666
Q ss_pred cccccccC
Q 012255 177 EDLLIKNC 184 (467)
Q Consensus 177 ~~L~l~~~ 184 (467)
+.|++.+.
T Consensus 108 ~~L~L~~N 115 (174)
T 2r9u_A 108 THIYLYNN 115 (174)
T ss_dssp SEEECCSS
T ss_pred CEEEeCCC
Confidence 66666554
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.55 E-value=0.006 Score=53.56 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=38.2
Q ss_pred hCCCCCEEeecCCCCcCHH-HH-HHhcCCCCCCEEeecCCCCCCcc-chHhhhcCCCCCeeccCCCCCCCH------HHH
Q 012255 380 SAHYLEILELARCQEISDE-GL-QLACQFPHLSILRLRKCLGVTDD-GLKPLVGSHKLDLLAVEDCPQVSE------RGV 450 (467)
Q Consensus 380 ~~~~L~~L~l~~c~~it~~-~~-~~l~~~~~L~~L~l~~c~~it~~-~~~~l~~~~~L~~L~l~~c~~~~~------~~~ 450 (467)
++++|+.|+|++ +.++.. ++ ..+..+++|+.|++++ +.+++. .+..+..+ +|++|++++++ ++. .-.
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNS-LCDTFRDQSTYI 243 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTST-TGGGCSSHHHHH
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCc-CccccCcchhHH
Confidence 356666666665 344331 11 1223466666666666 445543 22222223 66666666665 442 223
Q ss_pred HHHHhhcccccc
Q 012255 451 QGAARSVSFRQD 462 (467)
Q Consensus 451 ~~l~~~~~~~~~ 462 (467)
..+.+.++.++.
T Consensus 244 ~~il~~~P~L~~ 255 (267)
T 3rw6_A 244 SAIRERFPKLLR 255 (267)
T ss_dssp HHHHHHCTTCCE
T ss_pred HHHHHHCcccCe
Confidence 444455554443
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.13 E-value=0.0025 Score=58.87 Aligned_cols=63 Identities=21% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCP 443 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~ 443 (467)
+..+++|+.|+|++ +.++......+.++++|+.|+|++ +.++......+...+ |+.|++.+++
T Consensus 52 ~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 52 LRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred hccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCC-ceEEEeeCCC
Confidence 34567777777777 355554444566777777777777 456643333232233 7777777776
No 167
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.87 E-value=0.01 Score=52.12 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=56.6
Q ss_pred cCCCCcceeeccccCccCchhHHHHHhcCCCCcEEEcccCcccchh-HHHHHHHhCCCCCeeeeccCCCCCccccccCCC
Q 012255 232 VPCENMVELSLKNCIISPGRGLACVLGKCRNLEKIHLDMCVGVRDS-DIINMAQTSSKLRSISLRVPSDFSLPILMSNPL 310 (467)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 310 (467)
..+++|+.|+|++.....-..+...+..+++|+.|+++++. +... .+..+ ..+ +|++|.+.+++.. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l-~~l-~L~~L~L~~Npl~---------~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKI-KGL-KLEELWLDGNSLC---------D 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGG-TTS-CCSEEECTTSTTG---------G
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhc-ccC-CcceEEccCCcCc---------c
Confidence 35778999999987633333455556789999999998875 4432 22222 233 8999999886511 0
Q ss_pred CCC--HHHHHHHHhcCCCCCeEEec
Q 012255 311 RLT--DESLKALADNCRMLESVRIS 333 (467)
Q Consensus 311 ~~~--~~~l~~l~~~~~~L~~L~l~ 333 (467)
.+. ......+...+|+|+.|+=.
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred ccCcchhHHHHHHHHCcccCeECCc
Confidence 111 12233455578999888753
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.26 E-value=0.013 Score=53.92 Aligned_cols=67 Identities=18% Similarity=0.077 Sum_probs=54.8
Q ss_pred HHhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCCCCCC
Q 012255 378 LCSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDCPQVS 446 (467)
Q Consensus 378 l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c~~~~ 446 (467)
+..+++|+.|+|++++.++......+.++++|+.|++++ +.++......+..+++|+.|+|+++. ++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~-l~ 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNA-LE 93 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSC-CS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCc-cc
Confidence 456788999999865677765556677899999999999 56998777777789999999999985 44
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.14 E-value=0.65 Score=33.55 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=20.3
Q ss_pred HhCCCCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecC
Q 012255 379 CSAHYLEILELARCQEISDEGLQLACQFPHLSILRLRK 416 (467)
Q Consensus 379 ~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~ 416 (467)
..|.+|+++.|.. .++..+-.++.+|.+|+.+.+..
T Consensus 17 ~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 17 AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 3466666666653 34444445555666666666654
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=72.44 E-value=3.3 Score=31.44 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=17.4
Q ss_pred CCCEEeecCCCCcCHHHHHHhcCCCCCCEEeecC
Q 012255 383 YLEILELARCQEISDEGLQLACQFPHLSILRLRK 416 (467)
Q Consensus 383 ~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~ 416 (467)
+|+.|+|++ +.++......+..+++|+.|+|.+
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence 466666665 344433333444555666666665
No 171
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=49.01 E-value=15 Score=27.61 Aligned_cols=33 Identities=24% Similarity=0.089 Sum_probs=13.8
Q ss_pred CCCEEeecCCCCCChHhHHHHhcCCCCceeeccC
Q 012255 98 YLTDLTLNYCTFITDVGLCYLASCLNLSTLKLKF 131 (467)
Q Consensus 98 ~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~ 131 (467)
+|++|+|++. .++......+..+++|+.|+|.+
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecC
Confidence 4555555444 33332222233344444444444
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.51 E-value=5.5 Score=28.56 Aligned_cols=47 Identities=9% Similarity=-0.027 Sum_probs=36.1
Q ss_pred CcCHHHHHHhcCCCCCCEEeecCCCCCCccchHhhhcCCCCCeeccCCC
Q 012255 394 EISDEGLQLACQFPHLSILRLRKCLGVTDDGLKPLVGSHKLDLLAVEDC 442 (467)
Q Consensus 394 ~it~~~~~~l~~~~~L~~L~l~~c~~it~~~~~~l~~~~~L~~L~l~~c 442 (467)
.++..+-.++.+|.+|+.+.|.. +++..+-.++..|.+|+.+.+.+-
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 34444445677899999999987 588888888888999999988653
Done!