Query 012256
Match_columns 467
No_of_seqs 284 out of 2896
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02501 digalactosyldiacylgly 100.0 5.8E-83 1.2E-87 637.6 42.6 465 1-466 319-789 (794)
2 PLN02846 digalactosyldiacylgly 100.0 1.1E-74 2.4E-79 573.4 40.8 462 1-463 1-462 (462)
3 PLN02871 UDP-sulfoquinovose:DA 100.0 5.2E-37 1.1E-41 313.6 29.1 277 108-394 135-436 (465)
4 cd03796 GT1_PIG-A_like This fa 100.0 9.7E-37 2.1E-41 306.0 28.1 344 7-394 1-369 (398)
5 PRK10307 putative glycosyl tra 100.0 5.1E-36 1.1E-40 302.3 27.8 274 116-394 105-409 (412)
6 TIGR02468 sucrsPsyn_pln sucros 100.0 4.3E-35 9.3E-40 309.9 31.2 272 117-393 310-671 (1050)
7 KOG1111 N-acetylglucosaminyltr 100.0 6.8E-36 1.5E-40 273.9 16.5 342 7-396 2-370 (426)
8 cd03814 GT1_like_2 This family 100.0 3.9E-34 8.4E-39 282.4 29.4 348 7-391 1-364 (364)
9 PRK15427 colanic acid biosynth 100.0 7.4E-34 1.6E-38 284.5 30.7 265 109-391 110-404 (406)
10 PRK00654 glgA glycogen synthas 100.0 2.4E-34 5.1E-39 293.6 26.8 211 181-393 197-463 (466)
11 cd04962 GT1_like_5 This family 100.0 6.9E-34 1.5E-38 282.6 27.7 277 107-392 74-370 (371)
12 TIGR03449 mycothiol_MshA UDP-N 100.0 4.8E-34 1E-38 287.4 24.9 274 116-393 100-402 (405)
13 PRK14099 glycogen synthase; Pr 100.0 1.9E-33 4.1E-38 286.3 25.3 212 181-394 209-480 (485)
14 TIGR02472 sucr_P_syn_N sucrose 100.0 1.4E-33 3E-38 286.1 23.7 278 109-391 104-439 (439)
15 TIGR02095 glgA glycogen/starch 100.0 3.3E-33 7.1E-38 286.3 26.6 210 181-392 205-472 (473)
16 cd03805 GT1_ALG2_like This fam 100.0 4.7E-33 1E-37 278.9 27.0 269 112-386 89-392 (392)
17 TIGR03088 stp2 sugar transfera 100.0 1.2E-32 2.5E-37 274.4 29.1 343 6-392 2-372 (374)
18 cd03802 GT1_AviGT4_like This f 100.0 4.6E-33 1E-37 272.6 25.2 249 107-391 77-335 (335)
19 PLN02939 transferase, transfer 100.0 9.6E-33 2.1E-37 287.9 26.9 379 6-394 482-968 (977)
20 PLN02316 synthase/transferase 100.0 1.5E-32 3.1E-37 291.7 27.7 358 3-393 588-1034(1036)
21 cd03818 GT1_ExpC_like This fam 100.0 4.5E-33 9.7E-38 279.3 22.1 208 181-388 156-396 (396)
22 PRK14098 glycogen synthase; Pr 100.0 7.7E-33 1.7E-37 282.1 24.0 211 181-393 220-486 (489)
23 cd03792 GT1_Trehalose_phosphor 100.0 1.9E-32 4.1E-37 272.6 25.8 265 112-392 80-371 (372)
24 TIGR02149 glgA_Coryne glycogen 100.0 3.1E-32 6.6E-37 272.6 26.9 270 115-392 81-386 (388)
25 PRK15484 lipopolysaccharide 1, 100.0 5.9E-32 1.3E-36 269.1 27.9 253 114-392 96-377 (380)
26 TIGR02470 sucr_synth sucrose s 100.0 5.4E-32 1.2E-36 281.4 27.9 273 116-391 384-746 (784)
27 cd03817 GT1_UGDG_like This fam 100.0 1.6E-31 3.5E-36 264.1 30.2 352 7-391 1-372 (374)
28 PRK15179 Vi polysaccharide bio 100.0 2.1E-31 4.6E-36 277.4 30.1 279 106-392 389-693 (694)
29 cd03821 GT1_Bme6_like This fam 100.0 2.7E-31 5.9E-36 262.4 28.3 271 114-388 84-375 (375)
30 cd03791 GT1_Glycogen_synthase_ 100.0 1.2E-31 2.6E-36 275.6 26.6 209 181-391 210-475 (476)
31 cd04955 GT1_like_6 This family 100.0 1.7E-31 3.7E-36 264.3 26.8 262 115-391 84-363 (363)
32 cd03806 GT1_ALG11_like This fa 100.0 4E-31 8.7E-36 265.9 28.6 257 115-383 105-417 (419)
33 cd05844 GT1_like_7 Glycosyltra 100.0 8.7E-32 1.9E-36 267.1 23.4 266 109-388 74-366 (367)
34 cd03795 GT1_like_4 This family 100.0 2.3E-31 5.1E-36 262.6 26.3 332 7-383 1-357 (357)
35 PRK09922 UDP-D-galactose:(gluc 100.0 2.7E-31 5.9E-36 262.8 25.9 258 107-393 74-356 (359)
36 cd03816 GT1_ALG1_like This fam 100.0 1.5E-30 3.2E-35 262.0 30.1 273 113-387 91-411 (415)
37 cd03794 GT1_wbuB_like This fam 100.0 4.9E-31 1.1E-35 261.9 26.1 271 114-387 96-394 (394)
38 PLN00142 sucrose synthase 100.0 5.9E-31 1.3E-35 273.6 25.5 273 116-391 407-769 (815)
39 cd03822 GT1_ecORF704_like This 100.0 1.7E-30 3.6E-35 256.8 26.7 271 108-391 67-366 (366)
40 cd03801 GT1_YqgM_like This fam 100.0 2.2E-30 4.7E-35 254.6 27.3 352 7-391 1-374 (374)
41 cd03812 GT1_CapH_like This fam 100.0 2.4E-30 5.2E-35 255.7 27.1 251 108-367 71-334 (358)
42 cd03800 GT1_Sucrose_synthase T 100.0 7.3E-31 1.6E-35 263.2 22.9 275 109-387 91-397 (398)
43 cd03813 GT1_like_3 This family 100.0 1.4E-30 2.9E-35 266.6 24.8 267 116-391 172-475 (475)
44 PLN02949 transferase, transfer 100.0 1.4E-29 3.1E-34 255.4 31.6 205 181-392 220-456 (463)
45 cd04951 GT1_WbdM_like This fam 100.0 7E-30 1.5E-34 252.4 27.7 270 107-391 69-359 (360)
46 cd03798 GT1_wlbH_like This fam 100.0 8.3E-30 1.8E-34 251.3 27.8 274 107-391 81-375 (377)
47 cd03820 GT1_amsD_like This fam 100.0 1.4E-29 3.1E-34 247.3 28.5 260 106-387 72-347 (348)
48 TIGR03087 stp1 sugar transfera 100.0 9.4E-30 2E-34 255.3 27.7 273 108-391 95-395 (397)
49 cd03823 GT1_ExpE7_like This fa 100.0 3.7E-30 8E-35 253.3 23.5 256 108-391 87-358 (359)
50 TIGR02918 accessory Sec system 100.0 5E-30 1.1E-34 261.1 24.7 263 111-391 205-498 (500)
51 cd03807 GT1_WbnK_like This fam 100.0 2E-29 4.3E-34 248.1 28.2 343 7-391 1-365 (365)
52 cd03809 GT1_mtfB_like This fam 100.0 4.9E-30 1.1E-34 253.4 23.0 268 109-388 77-365 (365)
53 cd03799 GT1_amsK_like This is 100.0 6.2E-30 1.4E-34 252.2 23.2 257 108-385 70-354 (355)
54 PRK15490 Vi polysaccharide bio 100.0 4.7E-30 1E-34 255.7 21.2 278 106-391 269-574 (578)
55 PLN02275 transferase, transfer 100.0 7.8E-29 1.7E-33 246.0 29.6 244 113-362 96-371 (371)
56 cd03825 GT1_wcfI_like This fam 100.0 4.1E-29 8.8E-34 247.4 26.8 319 3-392 1-364 (365)
57 PRK10125 putative glycosyl tra 100.0 1.4E-29 3E-34 252.9 22.5 194 182-391 191-403 (405)
58 cd03808 GT1_cap1E_like This fa 100.0 1.2E-28 2.5E-33 241.9 26.1 268 107-387 70-358 (359)
59 cd03819 GT1_WavL_like This fam 100.0 1E-28 2.2E-33 243.7 23.8 257 106-381 67-354 (355)
60 cd04946 GT1_AmsK_like This fam 100.0 1E-27 2.2E-32 240.7 26.7 254 115-387 125-406 (407)
61 cd03804 GT1_wbaZ_like This fam 100.0 1.7E-27 3.6E-32 235.2 26.6 251 110-386 76-350 (351)
62 cd03811 GT1_WabH_like This fam 100.0 2.1E-27 4.6E-32 232.1 26.7 245 107-364 71-332 (353)
63 cd04949 GT1_gtfA_like This fam 99.9 1.3E-26 2.9E-31 230.6 21.2 257 115-385 97-371 (372)
64 PHA01633 putative glycosyl tra 99.9 1.1E-25 2.3E-30 215.8 25.4 241 125-388 53-335 (335)
65 PHA01630 putative group 1 glyc 99.9 2.8E-26 6E-31 222.4 21.2 196 181-391 94-329 (331)
66 cd03788 GT1_TPS Trehalose-6-Ph 99.9 9.2E-24 2E-28 214.3 14.3 260 117-389 131-458 (460)
67 PF00534 Glycos_transf_1: Glyc 99.9 1.3E-22 2.8E-27 179.2 14.1 150 224-373 10-169 (172)
68 PRK13609 diacylglycerol glucos 99.9 1.1E-21 2.4E-26 195.7 20.6 257 107-393 94-372 (380)
69 cd01635 Glycosyltransferase_GT 99.9 7.5E-21 1.6E-25 174.8 21.3 222 8-348 1-229 (229)
70 PRK05749 3-deoxy-D-manno-octul 99.9 5E-21 1.1E-25 193.8 21.8 270 108-391 115-418 (425)
71 cd04950 GT1_like_1 Glycosyltra 99.9 4.8E-21 1E-25 190.4 20.7 256 115-391 100-370 (373)
72 TIGR02400 trehalose_OtsA alpha 99.9 6.7E-21 1.4E-25 191.9 21.8 260 118-390 128-454 (456)
73 PLN02605 monogalactosyldiacylg 99.9 9.7E-21 2.1E-25 188.8 20.6 259 107-389 90-378 (382)
74 PRK00726 murG undecaprenyldiph 99.9 1.3E-20 2.9E-25 186.4 21.2 255 106-391 80-356 (357)
75 cd03793 GT1_Glycogen_synthase_ 99.9 1.9E-20 4.1E-25 187.3 22.2 98 297-394 470-588 (590)
76 COG0297 GlgA Glycogen synthase 99.9 1.8E-20 4E-25 186.7 21.7 165 228-394 293-479 (487)
77 PRK13608 diacylglycerol glucos 99.9 3E-20 6.4E-25 185.6 20.4 257 107-393 94-372 (391)
78 cd03785 GT1_MurG MurG is an N- 99.9 4.6E-20 9.9E-25 182.0 21.3 238 107-374 79-336 (350)
79 PLN03063 alpha,alpha-trehalose 99.8 2.1E-20 4.5E-25 199.6 16.7 264 119-394 149-479 (797)
80 TIGR01133 murG undecaprenyldip 99.8 2.7E-18 5.9E-23 169.2 21.4 235 107-373 80-332 (348)
81 PRK14501 putative bifunctional 99.8 2E-18 4.4E-23 184.8 16.6 262 118-394 134-464 (726)
82 KOG1387 Glycosyltransferase [C 99.8 6.8E-16 1.5E-20 141.8 25.0 270 113-391 146-457 (465)
83 PRK09814 beta-1,6-galactofuran 99.7 8.3E-17 1.8E-21 157.4 20.1 223 111-362 57-298 (333)
84 KOG0853 Glycosyltransferase [C 99.7 5.7E-17 1.2E-21 159.3 16.5 164 229-393 273-468 (495)
85 PF13692 Glyco_trans_1_4: Glyc 99.7 1.3E-17 2.8E-22 141.0 10.2 130 230-364 3-135 (135)
86 COG0438 RfaG Glycosyltransfera 99.7 2.2E-15 4.7E-20 146.7 24.5 205 182-392 151-376 (381)
87 TIGR00236 wecB UDP-N-acetylglu 99.7 2.8E-16 6.2E-21 155.9 15.7 243 106-366 75-336 (365)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 1.5E-15 3.2E-20 150.6 17.4 262 107-389 78-361 (363)
89 PRK00025 lpxB lipid-A-disaccha 99.7 5E-15 1.1E-19 147.8 18.9 239 106-367 74-344 (380)
90 TIGR02398 gluc_glyc_Psyn gluco 99.6 2.8E-14 6.2E-19 143.2 20.6 159 204-367 255-451 (487)
91 KOG2941 Beta-1,4-mannosyltrans 99.6 2.3E-13 4.9E-18 125.5 24.0 272 115-387 101-436 (444)
92 PLN03064 alpha,alpha-trehalose 99.6 7.1E-14 1.5E-18 149.1 16.2 261 119-394 233-563 (934)
93 TIGR03713 acc_sec_asp1 accesso 99.5 1.3E-13 2.9E-18 140.8 16.0 157 229-389 319-518 (519)
94 TIGR00215 lpxB lipid-A-disacch 99.5 5.9E-13 1.3E-17 132.5 18.4 236 107-365 79-348 (385)
95 TIGR02094 more_P_ylases alpha- 99.5 7.7E-12 1.7E-16 129.5 25.5 165 226-391 386-599 (601)
96 PF13524 Glyco_trans_1_2: Glyc 99.3 1E-11 2.2E-16 97.2 6.4 85 304-388 1-92 (92)
97 PF05693 Glycogen_syn: Glycoge 99.2 9.7E-10 2.1E-14 110.3 16.9 99 297-395 465-584 (633)
98 cd04299 GT1_Glycogen_Phosphory 99.2 6.6E-09 1.4E-13 109.9 23.7 165 226-391 475-688 (778)
99 TIGR02919 accessory Sec system 99.2 4.2E-10 9.2E-15 112.5 13.9 125 229-366 282-413 (438)
100 COG0707 MurG UDP-N-acetylgluco 98.9 3E-08 6.4E-13 96.7 15.8 230 106-367 80-327 (357)
101 PRK12446 undecaprenyldiphospho 98.9 8.8E-08 1.9E-12 94.2 19.3 150 226-390 182-349 (352)
102 TIGR03590 PseG pseudaminic aci 98.9 6E-08 1.3E-12 92.2 17.1 262 7-334 1-269 (279)
103 PF00982 Glyco_transf_20: Glyc 98.8 3E-07 6.4E-12 93.1 19.4 238 117-367 141-443 (474)
104 PRK10117 trehalose-6-phosphate 98.8 1.3E-07 2.8E-12 94.6 14.8 163 228-393 254-454 (474)
105 cd03784 GT1_Gtf_like This fami 98.6 2.1E-06 4.5E-11 86.4 18.2 122 228-364 239-372 (401)
106 PF13528 Glyco_trans_1_3: Glyc 98.6 1.2E-06 2.5E-11 85.3 15.8 113 228-360 192-316 (318)
107 COG1519 KdtA 3-deoxy-D-manno-o 98.6 1.4E-05 3.1E-10 77.4 21.5 239 109-365 115-387 (419)
108 TIGR03492 conserved hypothetic 98.5 2.1E-06 4.5E-11 85.8 15.4 130 231-366 208-366 (396)
109 PLN02205 alpha,alpha-trehalose 98.5 5.1E-06 1.1E-10 90.0 19.0 236 119-367 203-520 (854)
110 PHA03392 egt ecdysteroid UDP-g 98.5 7.8E-05 1.7E-09 76.8 24.7 121 229-365 297-433 (507)
111 PF13439 Glyco_transf_4: Glyco 98.4 1.1E-07 2.3E-12 83.4 3.0 102 106-212 69-177 (177)
112 COG0380 OtsA Trehalose-6-phosp 98.4 3.7E-05 8E-10 76.9 20.9 136 229-367 282-448 (486)
113 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 1.2E-05 2.7E-10 79.5 17.1 97 285-389 263-364 (365)
114 COG3914 Spy Predicted O-linked 98.3 3.5E-05 7.7E-10 76.9 17.9 160 231-391 430-612 (620)
115 PF02684 LpxB: Lipid-A-disacch 98.2 1E-05 2.2E-10 79.2 11.8 240 107-366 72-342 (373)
116 TIGR00661 MJ1255 conserved hyp 98.2 0.0001 2.2E-09 71.8 18.0 116 231-366 191-316 (321)
117 PF13844 Glyco_transf_41: Glyc 98.2 3E-05 6.4E-10 77.6 13.6 165 224-391 280-465 (468)
118 PF09314 DUF1972: Domain of un 98.2 2E-05 4.3E-10 69.0 10.6 162 7-200 3-172 (185)
119 PF02350 Epimerase_2: UDP-N-ac 98.1 3.2E-05 6.9E-10 75.8 11.1 239 107-364 57-318 (346)
120 COG0763 LpxB Lipid A disacchar 98.0 2.5E-05 5.4E-10 75.0 9.2 205 107-333 75-291 (381)
121 PF04007 DUF354: Protein of un 97.9 0.00077 1.7E-08 65.3 18.1 219 106-365 72-311 (335)
122 PF13477 Glyco_trans_4_2: Glyc 97.8 5.7E-05 1.2E-09 63.6 7.6 75 106-189 63-139 (139)
123 TIGR01426 MGT glycosyltransfer 97.8 0.00038 8.2E-09 69.8 13.9 126 229-366 226-361 (392)
124 COG0381 WecB UDP-N-acetylgluco 97.6 0.0086 1.9E-07 58.0 19.1 264 107-391 82-369 (383)
125 PF13579 Glyco_trans_4_4: Glyc 97.5 6.3E-05 1.4E-09 64.4 3.3 81 107-196 61-144 (160)
126 PRK01021 lpxB lipid-A-disaccha 97.5 0.002 4.4E-08 66.3 14.0 200 108-333 301-515 (608)
127 PRK02797 4-alpha-L-fucosyltran 97.4 0.068 1.5E-06 50.4 21.4 156 230-395 146-319 (322)
128 COG3660 Predicted nucleoside-d 97.4 0.034 7.3E-07 50.7 18.4 106 225-334 158-274 (329)
129 COG3980 spsG Spore coat polysa 97.4 0.008 1.7E-07 55.3 14.6 87 231-327 161-248 (318)
130 COG4641 Uncharacterized protei 97.1 0.0096 2.1E-07 57.2 13.1 196 183-391 140-360 (373)
131 PF04101 Glyco_tran_28_C: Glyc 96.9 5.2E-05 1.1E-09 66.2 -3.8 100 263-367 35-147 (167)
132 COG4671 Predicted glycosyl tra 96.8 0.13 2.9E-06 49.0 17.6 129 229-365 220-366 (400)
133 PRK14089 ipid-A-disaccharide s 96.8 0.0066 1.4E-07 59.3 8.8 91 231-333 170-262 (347)
134 PF00201 UDPGT: UDP-glucoronos 96.6 0.06 1.3E-06 55.8 15.3 125 229-365 277-410 (500)
135 PF12000 Glyco_trans_4_3: Gkyc 96.3 0.0006 1.3E-08 59.0 -1.2 118 87-211 34-170 (171)
136 PF07429 Glyco_transf_56: 4-al 96.3 0.61 1.3E-05 44.8 18.5 135 229-367 184-336 (360)
137 COG1819 Glycosyl transferases, 96.3 0.058 1.3E-06 54.2 12.3 124 229-366 238-370 (406)
138 KOG3742 Glycogen synthase [Car 96.2 0.0033 7.1E-08 61.1 3.1 96 297-392 496-612 (692)
139 PLN02410 UDP-glucoronosyl/UDP- 95.8 0.48 1E-05 48.3 16.5 76 285-365 325-411 (451)
140 PRK14986 glycogen phosphorylas 95.2 0.18 4E-06 54.0 11.5 132 226-357 540-703 (815)
141 PF11440 AGT: DNA alpha-glucos 95.0 1.6 3.6E-05 40.4 15.3 233 117-363 61-352 (355)
142 COG1817 Uncharacterized protei 94.9 2.8 6.2E-05 39.6 16.7 221 106-366 73-316 (346)
143 PLN02562 UDP-glycosyltransfera 94.8 0.37 8.1E-06 49.1 12.1 126 229-364 274-413 (448)
144 PLN02448 UDP-glycosyltransfera 94.8 0.48 1E-05 48.5 12.9 125 229-365 275-416 (459)
145 cd04300 GT1_Glycogen_Phosphory 94.7 0.24 5.1E-06 53.2 10.7 132 226-357 527-690 (797)
146 COG0058 GlgP Glucan phosphoryl 94.2 0.35 7.5E-06 51.3 10.4 124 226-349 484-629 (750)
147 PF15024 Glyco_transf_18: Glyc 94.1 0.81 1.7E-05 46.9 12.4 148 229-392 277-455 (559)
148 PLN03007 UDP-glucosyltransfera 94.1 0.79 1.7E-05 47.2 12.9 129 228-365 285-441 (482)
149 PLN02210 UDP-glucosyl transfer 93.8 1.4 3E-05 45.1 13.8 130 229-365 270-416 (456)
150 PF00343 Phosphorylase: Carboh 93.7 0.82 1.8E-05 48.5 12.0 131 226-356 441-603 (713)
151 PF05159 Capsule_synth: Capsul 93.6 1.5 3.2E-05 41.4 12.8 100 228-334 116-227 (269)
152 PLN02670 transferase, transfer 93.5 2.1 4.6E-05 43.8 14.4 77 286-365 341-430 (472)
153 PF06258 Mito_fiss_Elm1: Mitoc 93.4 2.7 5.8E-05 40.6 14.1 105 227-335 145-259 (311)
154 PLN03004 UDP-glycosyltransfera 93.3 1.4 3E-05 44.9 12.7 77 285-364 335-424 (451)
155 TIGR02093 P_ylase glycogen/sta 93.3 0.46 1E-05 50.9 9.5 132 226-357 524-687 (794)
156 PRK14985 maltodextrin phosphor 93.2 0.42 9.2E-06 51.2 8.9 130 226-356 526-688 (798)
157 PLN02167 UDP-glycosyltransfera 92.7 2.5 5.4E-05 43.5 13.8 125 229-365 281-435 (475)
158 PLN02207 UDP-glycosyltransfera 92.6 2.9 6.3E-05 42.8 13.8 127 228-364 275-426 (468)
159 PLN02173 UDP-glucosyl transfer 92.5 2.4 5.2E-05 43.2 13.0 79 284-365 317-409 (449)
160 PLN02555 limonoid glucosyltran 92.4 2.8 6E-05 43.1 13.5 76 285-365 338-430 (480)
161 PLN02554 UDP-glycosyltransfera 92.3 2.3 4.9E-05 43.9 12.9 75 285-364 343-440 (481)
162 PLN02152 indole-3-acetate beta 92.2 2.7 6E-05 42.8 13.1 130 229-365 262-418 (455)
163 cd03789 GT1_LPS_heptosyltransf 92.0 1.1 2.4E-05 42.4 9.6 98 231-335 124-227 (279)
164 PF04464 Glyphos_transf: CDP-G 91.9 1.4 3.1E-05 43.6 10.6 177 182-366 135-338 (369)
165 PLN02764 glycosyltransferase f 91.9 5 0.00011 40.8 14.4 78 285-365 318-408 (453)
166 PLN02863 UDP-glucoronosyl/UDP- 91.8 4.2 9.2E-05 41.8 14.1 124 229-363 284-432 (477)
167 PF10087 DUF2325: Uncharacteri 90.9 1.1 2.5E-05 34.8 7.0 72 263-334 2-84 (97)
168 TIGR02193 heptsyl_trn_I lipopo 90.5 5.8 0.00012 38.3 13.1 126 229-362 180-319 (319)
169 PF08323 Glyco_transf_5: Starc 90.4 0.33 7.1E-06 45.1 4.1 41 7-48 1-43 (245)
170 PLN02208 glycosyltransferase f 90.3 7.7 0.00017 39.5 14.1 131 228-365 251-402 (442)
171 PLN00164 glucosyltransferase; 90.3 7.8 0.00017 39.9 14.3 79 285-366 340-433 (480)
172 PLN00414 glycosyltransferase f 90.3 5.8 0.00013 40.4 13.2 130 227-365 251-403 (446)
173 PF01075 Glyco_transf_9: Glyco 90.2 1.9 4.1E-05 39.9 9.1 101 228-335 105-212 (247)
174 COG0859 RfaF ADP-heptose:LPS h 90.0 1.9 4.1E-05 42.1 9.3 100 229-335 176-280 (334)
175 KOG1050 Trehalose-6-phosphate 89.9 4.8 0.0001 43.3 12.6 139 227-367 274-443 (732)
176 TIGR02195 heptsyl_trn_II lipop 89.6 2.8 6.1E-05 40.8 10.2 99 230-335 176-280 (334)
177 PLN02992 coniferyl-alcohol glu 89.0 11 0.00024 38.7 14.2 78 285-365 339-428 (481)
178 PF03016 Exostosin: Exostosin 88.0 0.62 1.4E-05 44.6 4.3 37 297-333 232-269 (302)
179 PF12038 DUF3524: Domain of un 87.6 3.5 7.6E-05 35.3 7.9 77 112-193 54-131 (168)
180 PLN02534 UDP-glycosyltransfera 87.0 13 0.00027 38.5 13.2 76 285-363 345-443 (491)
181 PRK10017 colanic acid biosynth 83.9 52 0.0011 33.3 24.2 116 245-367 260-395 (426)
182 PRK10916 ADP-heptose:LPS hepto 83.3 11 0.00024 36.9 10.5 98 230-334 182-289 (348)
183 PRK10964 ADP-heptose:LPS hepto 82.6 9.7 0.00021 36.8 9.8 85 243-335 195-282 (322)
184 TIGR03609 S_layer_CsaB polysac 82.3 47 0.001 31.6 16.3 85 244-334 190-278 (298)
185 PRK10422 lipopolysaccharide co 78.1 17 0.00036 35.8 9.8 100 229-335 184-291 (352)
186 PLN03015 UDP-glucosyl transfer 77.3 54 0.0012 33.7 13.3 75 286-363 337-425 (470)
187 KOG1192 UDP-glucuronosyl and U 76.7 26 0.00057 36.1 11.3 129 230-366 279-424 (496)
188 TIGR00288 conserved hypothetic 76.6 17 0.00037 31.1 8.0 68 241-309 88-156 (160)
189 PF01113 DapB_N: Dihydrodipico 76.4 3.6 7.8E-05 33.7 3.8 41 295-335 61-101 (124)
190 PF01975 SurE: Survival protei 74.9 8.1 0.00017 34.5 5.9 38 3-50 1-39 (196)
191 TIGR02201 heptsyl_trn_III lipo 74.8 28 0.00061 33.9 10.4 98 230-334 183-288 (344)
192 KOG4626 O-linked N-acetylgluco 73.1 15 0.00033 38.3 7.8 150 240-391 768-939 (966)
193 PF11071 DUF2872: Protein of u 71.3 23 0.00051 28.9 7.0 65 297-362 68-140 (141)
194 TIGR03646 YtoQ_fam YtoQ family 69.1 33 0.00071 28.1 7.4 65 297-362 71-143 (144)
195 TIGR01012 Sa_S2_E_A ribosomal 69.1 21 0.00046 31.7 7.1 91 241-333 43-139 (196)
196 KOG1021 Acetylglucosaminyltran 63.1 20 0.00043 36.8 6.6 68 297-365 339-410 (464)
197 TIGR00337 PyrG CTP synthase. C 62.7 2E+02 0.0043 30.0 18.2 77 260-336 289-383 (525)
198 KOG3349 Predicted glycosyltran 61.1 60 0.0013 27.5 7.7 94 231-333 6-108 (170)
199 PRK04020 rps2P 30S ribosomal p 59.0 39 0.00085 30.3 6.9 91 241-333 49-145 (204)
200 cd01080 NAD_bind_m-THF_DH_Cycl 58.9 43 0.00092 29.0 7.0 64 248-311 32-97 (168)
201 PF06925 MGDG_synth: Monogalac 58.6 18 0.00038 31.3 4.7 25 107-131 79-103 (169)
202 PF13407 Peripla_BP_4: Peripla 56.6 1.4E+02 0.0031 27.1 10.9 60 301-362 55-115 (257)
203 PTZ00254 40S ribosomal protein 56.6 43 0.00093 31.0 6.9 93 240-333 51-149 (249)
204 PF13793 Pribosyltran_N: N-ter 56.0 15 0.00031 29.7 3.4 50 4-54 46-97 (116)
205 PRK04531 acetylglutamate kinas 55.7 60 0.0013 32.5 8.4 121 229-365 37-164 (398)
206 COG2247 LytB Putative cell wal 55.4 89 0.0019 29.9 8.8 74 258-333 75-163 (337)
207 PF03033 Glyco_transf_28: Glyc 55.4 13 0.00028 30.6 3.3 25 8-37 1-26 (139)
208 TIGR00670 asp_carb_tr aspartat 54.8 2E+02 0.0044 27.6 12.1 121 182-310 96-225 (301)
209 PF05116 S6PP: Sucrose-6F-phos 54.4 5 0.00011 37.3 0.6 29 436-464 34-63 (247)
210 cd06167 LabA_like LabA_like pr 54.3 69 0.0015 26.7 7.6 66 239-305 78-146 (149)
211 PF13905 Thioredoxin_8: Thiore 54.0 82 0.0018 23.7 7.4 79 229-309 2-85 (95)
212 cd01967 Nitrogenase_MoFe_alpha 51.6 2.6E+02 0.0057 27.9 16.6 111 240-364 134-258 (406)
213 cd01425 RPS2 Ribosomal protein 51.4 1.2E+02 0.0026 26.9 8.9 73 260-333 56-158 (193)
214 PRK05380 pyrG CTP synthetase; 51.1 3.1E+02 0.0067 28.6 18.0 78 259-336 287-383 (533)
215 PRK06719 precorrin-2 dehydroge 50.0 18 0.00039 31.0 3.2 34 3-46 11-44 (157)
216 PF10686 DUF2493: Protein of u 49.9 97 0.0021 22.5 7.5 57 229-287 3-61 (71)
217 cd06289 PBP1_MalI_like Ligand- 49.7 2E+02 0.0044 26.1 15.2 62 301-365 55-116 (268)
218 cd00027 BRCT Breast Cancer Sup 49.4 79 0.0017 21.6 6.3 61 261-331 2-64 (72)
219 PRK10840 transcriptional regul 49.4 1.9E+02 0.0041 25.7 10.7 104 260-364 3-126 (216)
220 cd05565 PTS_IIB_lactose PTS_II 48.5 44 0.00096 26.1 4.9 69 263-332 4-79 (99)
221 PF01936 NYN: NYN domain; Int 47.6 74 0.0016 26.2 6.7 67 240-307 75-144 (146)
222 PRK08305 spoVFB dipicolinate s 47.2 26 0.00055 31.2 3.8 32 1-37 1-33 (196)
223 PF01408 GFO_IDH_MocA: Oxidore 47.1 1.3E+02 0.0028 23.7 7.8 71 258-334 23-95 (120)
224 PF01531 Glyco_transf_11: Glyc 47.0 95 0.0021 29.7 8.1 66 244-311 190-257 (298)
225 PRK13015 3-dehydroquinate dehy 46.9 42 0.00091 28.2 4.8 89 275-363 35-141 (146)
226 PLN00414 glycosyltransferase f 46.8 26 0.00057 35.7 4.4 40 1-47 1-41 (446)
227 PF04230 PS_pyruv_trans: Polys 46.6 2.3E+02 0.0049 25.8 13.1 87 242-333 190-284 (286)
228 PF09949 DUF2183: Uncharacteri 46.5 62 0.0013 25.3 5.5 39 248-286 52-92 (100)
229 cd06301 PBP1_rhizopine_binding 46.5 2.3E+02 0.0051 25.9 13.5 42 422-464 170-212 (272)
230 PRK00048 dihydrodipicolinate r 46.3 61 0.0013 30.2 6.5 42 294-335 53-94 (257)
231 PF00852 Glyco_transf_10: Glyc 45.5 72 0.0016 31.3 7.1 79 297-382 223-311 (349)
232 cd01965 Nitrogenase_MoFe_beta_ 45.5 3.4E+02 0.0073 27.4 13.3 112 241-365 132-274 (428)
233 COG2984 ABC-type uncharacteriz 44.5 1.2E+02 0.0026 29.2 8.0 78 258-335 156-249 (322)
234 TIGR01088 aroQ 3-dehydroquinat 44.0 52 0.0011 27.5 4.8 90 274-363 32-139 (141)
235 cd01972 Nitrogenase_VnfE_like 42.7 3.7E+02 0.0081 27.1 14.0 111 240-363 136-264 (426)
236 PLN02327 CTP synthase 42.5 4.3E+02 0.0093 27.8 18.7 39 297-335 358-401 (557)
237 PRK05395 3-dehydroquinate dehy 41.9 55 0.0012 27.5 4.7 89 275-363 35-141 (146)
238 KOG2884 26S proteasome regulat 41.4 2.1E+02 0.0045 25.9 8.3 115 229-364 108-229 (259)
239 PRK05447 1-deoxy-D-xylulose 5- 41.2 1.3E+02 0.0029 29.8 8.1 87 241-334 36-124 (385)
240 PF02670 DXP_reductoisom: 1-de 40.7 96 0.0021 25.6 6.0 96 229-332 24-121 (129)
241 TIGR00853 pts-lac PTS system, 40.7 47 0.001 25.7 4.0 70 263-333 7-83 (95)
242 cd05564 PTS_IIB_chitobiose_lic 40.2 57 0.0012 25.2 4.4 70 263-333 3-79 (96)
243 PRK11891 aspartate carbamoyltr 39.7 3.7E+02 0.0081 27.2 11.1 122 182-310 183-317 (429)
244 TIGR01283 nifE nitrogenase mol 39.5 4.3E+02 0.0094 27.0 14.3 111 240-364 167-295 (456)
245 KOG4131 Ngg1-interacting facto 39.1 78 0.0017 28.9 5.5 91 230-335 144-237 (272)
246 PLN02527 aspartate carbamoyltr 38.5 3.7E+02 0.008 25.9 12.4 122 182-310 97-227 (306)
247 KOG0832 Mitochondrial/chloropl 38.2 1.7E+02 0.0036 26.7 7.4 30 303-333 175-204 (251)
248 PRK06718 precorrin-2 dehydroge 37.4 2.7E+02 0.006 24.8 9.0 100 261-364 34-142 (202)
249 COG1887 TagB Putative glycosyl 35.9 4.6E+02 0.0099 26.2 12.9 132 226-367 205-356 (388)
250 COG1519 KdtA 3-deoxy-D-manno-o 35.8 3.8E+02 0.0083 26.9 10.2 96 231-333 52-154 (419)
251 PF11238 DUF3039: Protein of u 35.6 31 0.00066 23.8 1.9 16 316-331 15-30 (58)
252 PRK03092 ribose-phosphate pyro 34.9 58 0.0013 31.3 4.5 45 3-48 34-78 (304)
253 PLN02369 ribose-phosphate pyro 34.8 58 0.0013 31.3 4.4 44 4-48 37-80 (302)
254 PF11997 DUF3492: Domain of un 34.7 1.1E+02 0.0025 28.7 6.3 75 117-193 172-257 (268)
255 cd00466 DHQase_II Dehydroquina 34.5 75 0.0016 26.5 4.4 89 275-363 33-139 (140)
256 PRK06718 precorrin-2 dehydroge 34.1 43 0.00094 30.0 3.3 34 3-46 8-41 (202)
257 PRK06249 2-dehydropantoate 2-r 33.9 64 0.0014 31.0 4.7 28 1-37 1-28 (313)
258 PRK05472 redox-sensing transcr 33.7 3.5E+02 0.0076 24.2 11.5 97 241-339 65-184 (213)
259 PF04413 Glycos_transf_N: 3-De 33.5 2.4E+02 0.0051 24.8 7.8 98 230-333 23-126 (186)
260 PRK05718 keto-hydroxyglutarate 33.5 2.7E+02 0.0058 25.2 8.2 81 247-331 53-134 (212)
261 PF04430 DUF498: Protein of un 33.3 81 0.0018 25.0 4.4 42 248-289 41-86 (110)
262 PRK05299 rpsB 30S ribosomal pr 33.3 4E+02 0.0086 24.9 9.6 30 303-333 159-188 (258)
263 COG4567 Response regulator con 33.1 3.1E+02 0.0067 23.4 8.1 130 259-388 8-153 (182)
264 TIGR01361 DAHP_synth_Bsub phos 33.0 3.5E+02 0.0076 25.3 9.2 97 234-333 28-140 (260)
265 PF07801 DUF1647: Protein of u 32.9 2.6E+02 0.0056 23.5 7.3 64 231-295 61-125 (142)
266 cd01539 PBP1_GGBP Periplasmic 32.6 3.3E+02 0.0072 25.6 9.5 43 420-462 185-228 (303)
267 cd06312 PBP1_ABC_sugar_binding 32.6 3.9E+02 0.0085 24.4 14.1 42 422-464 170-211 (271)
268 PRK01259 ribose-phosphate pyro 32.3 60 0.0013 31.3 4.1 45 4-49 46-90 (309)
269 PF13241 NAD_binding_7: Putati 32.3 56 0.0012 25.5 3.3 34 3-46 5-38 (103)
270 COG1692 Calcineurin-like phosp 32.0 3.5E+02 0.0076 25.1 8.5 99 231-333 2-115 (266)
271 PF01081 Aldolase: KDPG and KH 31.8 2.8E+02 0.006 24.7 7.9 80 248-331 47-127 (196)
272 TIGR02853 spore_dpaA dipicolin 31.8 3.1E+02 0.0068 26.0 8.9 33 297-329 205-237 (287)
273 COG0052 RpsB Ribosomal protein 31.7 1.7E+02 0.0037 27.0 6.5 18 316-333 170-187 (252)
274 COG1927 Mtd Coenzyme F420-depe 31.6 3.7E+02 0.0081 24.1 8.3 37 231-271 6-42 (277)
275 PRK04923 ribose-phosphate pyro 31.4 71 0.0015 30.9 4.4 44 4-48 52-95 (319)
276 PRK01372 ddl D-alanine--D-alan 31.4 64 0.0014 30.7 4.2 31 6-37 5-36 (304)
277 KOG3185 Translation initiation 31.1 85 0.0018 27.5 4.3 64 301-364 10-90 (245)
278 PLN02562 UDP-glycosyltransfera 31.0 73 0.0016 32.5 4.7 41 1-47 1-43 (448)
279 PRK13302 putative L-aspartate 31.0 3.5E+02 0.0075 25.4 9.0 71 259-334 30-100 (271)
280 PRK05708 2-dehydropantoate 2-r 30.9 66 0.0014 30.8 4.2 33 1-46 1-33 (305)
281 PLN02208 glycosyltransferase f 30.7 67 0.0015 32.7 4.4 36 6-47 5-41 (442)
282 COG0439 AccC Biotin carboxylas 30.2 4.9E+02 0.011 26.6 10.3 121 232-366 48-189 (449)
283 PRK09739 hypothetical protein; 30.0 88 0.0019 27.8 4.6 31 1-37 1-34 (199)
284 TIGR00036 dapB dihydrodipicoli 29.8 1E+02 0.0022 28.9 5.1 39 297-335 64-102 (266)
285 PF10649 DUF2478: Protein of u 29.7 70 0.0015 27.4 3.6 45 301-345 93-144 (159)
286 PF12996 DUF3880: DUF based on 29.7 71 0.0015 23.6 3.3 54 182-239 19-77 (79)
287 PRK15408 autoinducer 2-binding 29.5 4.3E+02 0.0093 25.6 9.7 35 301-335 80-115 (336)
288 PF01220 DHquinase_II: Dehydro 29.4 1E+02 0.0022 25.8 4.4 89 274-362 33-139 (140)
289 cd01750 GATase1_CobQ Type 1 gl 29.3 1.8E+02 0.0038 25.7 6.4 69 263-335 3-82 (194)
290 PF00533 BRCT: BRCA1 C Terminu 28.8 85 0.0018 22.4 3.6 65 258-331 6-71 (78)
291 PRK03743 pdxA 4-hydroxythreoni 28.8 2.3E+02 0.005 27.6 7.4 73 286-363 240-325 (332)
292 PF00205 TPP_enzyme_M: Thiamin 28.3 2.8E+02 0.0061 22.6 7.1 47 262-308 14-84 (137)
293 PRK07236 hypothetical protein; 28.3 79 0.0017 31.3 4.4 26 3-37 4-29 (386)
294 COG0111 SerA Phosphoglycerate 28.2 3.4E+02 0.0074 26.3 8.6 65 262-326 144-227 (324)
295 PRK13398 3-deoxy-7-phosphohept 28.1 5.1E+02 0.011 24.3 11.9 99 232-333 28-142 (266)
296 PRK02269 ribose-phosphate pyro 28.1 94 0.002 30.1 4.7 44 4-48 51-94 (320)
297 PRK02812 ribose-phosphate pyro 28.1 81 0.0017 30.7 4.2 44 4-48 67-110 (330)
298 PLN03007 UDP-glucosyltransfera 28.0 88 0.0019 32.3 4.8 37 5-47 5-42 (482)
299 PF12738 PTCB-BRCT: twin BRCT 28.0 1E+02 0.0022 21.3 3.8 59 262-331 2-61 (63)
300 PRK02458 ribose-phosphate pyro 27.8 91 0.002 30.3 4.5 44 4-48 55-98 (323)
301 PRK13964 coaD phosphopantethei 27.7 1.5E+02 0.0033 24.7 5.3 22 8-30 3-24 (140)
302 COG0062 Uncharacterized conser 27.5 3.7E+02 0.008 24.1 7.9 101 228-335 49-161 (203)
303 PF06418 CTP_synth_N: CTP synt 27.5 2.8E+02 0.0061 26.0 7.3 39 8-48 3-43 (276)
304 PRK09428 pssA phosphatidylseri 27.3 96 0.0021 31.7 4.7 38 6-50 265-303 (451)
305 PF00885 DMRL_synthase: 6,7-di 27.2 74 0.0016 26.8 3.3 32 3-37 1-33 (144)
306 PLN00016 RNA-binding protein; 27.2 77 0.0017 31.3 4.1 27 7-37 54-80 (378)
307 PRK12311 rpsB 30S ribosomal pr 27.1 5.2E+02 0.011 25.1 9.4 30 303-333 154-183 (326)
308 TIGR00557 pdxA 4-hydroxythreon 27.0 2.7E+02 0.0058 27.0 7.4 73 286-363 233-318 (320)
309 PRK08192 aspartate carbamoyltr 26.9 6E+02 0.013 24.8 11.8 122 182-310 101-235 (338)
310 TIGR01251 ribP_PPkin ribose-ph 26.6 92 0.002 30.0 4.3 45 4-49 46-91 (308)
311 PTZ00145 phosphoribosylpyropho 26.2 94 0.002 31.5 4.4 44 4-48 165-208 (439)
312 COG2327 WcaK Polysaccharide py 26.1 6.7E+02 0.014 25.0 12.8 101 262-367 242-353 (385)
313 PRK02261 methylaspartate mutas 26.0 3.8E+02 0.0083 22.2 8.3 66 230-296 55-125 (137)
314 PRK14569 D-alanyl-alanine synt 25.8 93 0.002 29.6 4.2 32 5-37 3-35 (296)
315 PLN02696 1-deoxy-D-xylulose-5- 25.8 2.4E+02 0.0053 28.7 7.1 89 240-333 91-181 (454)
316 PLN02240 UDP-glucose 4-epimera 25.5 1E+02 0.0022 29.9 4.5 29 1-37 1-29 (352)
317 TIGR01279 DPOR_bchN light-inde 25.2 5.8E+02 0.013 25.6 10.0 112 240-365 130-250 (407)
318 TIGR01182 eda Entner-Doudoroff 25.2 5E+02 0.011 23.3 9.3 80 246-329 45-125 (204)
319 KOG0780 Signal recognition par 25.1 7.1E+02 0.015 25.0 10.7 158 232-392 157-342 (483)
320 cd06271 PBP1_AglR_RafR_like Li 24.7 5.2E+02 0.011 23.3 16.0 61 302-366 60-120 (268)
321 TIGR01768 GGGP-family geranylg 24.6 1E+02 0.0022 28.1 3.9 73 236-311 4-81 (223)
322 PRK00553 ribose-phosphate pyro 24.5 1.1E+02 0.0023 29.9 4.3 44 4-48 55-98 (332)
323 PF03435 Saccharop_dh: Sacchar 24.4 4.2E+02 0.0092 26.1 8.8 73 258-333 20-99 (386)
324 COG1553 DsrE Uncharacterized c 24.3 2.6E+02 0.0057 22.8 5.7 29 8-37 3-31 (126)
325 PF01012 ETF: Electron transfe 24.1 3.3E+02 0.0072 23.0 7.0 91 243-333 16-122 (164)
326 cd06270 PBP1_GalS_like Ligand 24.1 5.4E+02 0.012 23.3 15.1 61 301-365 55-115 (268)
327 PRK08306 dipicolinate synthase 23.9 1.9E+02 0.0041 27.6 5.9 23 6-37 3-25 (296)
328 PRK13396 3-deoxy-7-phosphohept 23.9 7E+02 0.015 24.5 9.8 98 231-333 102-216 (352)
329 cd05125 Mth938_2P1-like Mth938 23.9 2.2E+02 0.0047 22.9 5.3 42 248-289 42-87 (114)
330 COG4109 Predicted transcriptio 23.8 2.3E+02 0.005 27.7 6.2 54 262-318 116-172 (432)
331 TIGR01658 EYA-cons_domain eyes 23.8 1.1E+02 0.0023 28.3 3.8 27 248-274 216-244 (274)
332 COG0496 SurE Predicted acid ph 23.7 1.5E+02 0.0032 27.6 4.8 16 108-123 74-89 (252)
333 cd05312 NAD_bind_1_malic_enz N 23.5 3.8E+02 0.0083 25.4 7.6 36 297-332 99-139 (279)
334 CHL00067 rps2 ribosomal protei 23.2 5.8E+02 0.013 23.3 9.0 30 303-333 163-192 (230)
335 PRK05562 precorrin-2 dehydroge 23.0 1E+02 0.0022 28.2 3.6 36 4-49 24-59 (223)
336 PLN02929 NADH kinase 22.9 3.4E+02 0.0074 26.0 7.2 90 274-365 38-138 (301)
337 PRK08163 salicylate hydroxylas 22.6 1.1E+02 0.0024 30.3 4.3 27 1-37 1-27 (396)
338 cd05212 NAD_bind_m-THF_DH_Cycl 22.5 4.6E+02 0.0099 21.9 7.4 70 258-329 26-97 (140)
339 COG0757 AroQ 3-dehydroquinate 22.2 3E+02 0.0065 23.0 5.7 88 275-362 34-139 (146)
340 PRK15424 propionate catabolism 22.0 6.4E+02 0.014 26.5 9.7 98 247-363 96-194 (538)
341 PRK06015 keto-hydroxyglutarate 21.9 5.8E+02 0.013 22.8 9.1 79 247-329 42-121 (201)
342 PRK02746 pdxA 4-hydroxythreoni 21.7 6.1E+02 0.013 24.9 8.8 73 286-363 245-338 (345)
343 PLN02297 ribose-phosphate pyro 21.7 1.3E+02 0.0027 29.3 4.2 43 3-48 64-106 (326)
344 PRK07199 phosphoribosylpyropho 21.6 1.2E+02 0.0026 29.1 4.0 43 4-48 48-90 (301)
345 PF02302 PTS_IIB: PTS system, 21.6 2.1E+02 0.0045 21.3 4.7 49 263-311 3-57 (90)
346 PF00185 OTCace: Aspartate/orn 21.5 5.1E+02 0.011 22.0 8.2 74 229-311 2-83 (158)
347 TIGR00746 arcC carbamate kinas 21.5 2.9E+02 0.0064 26.6 6.6 50 318-367 175-227 (310)
348 TIGR00243 Dxr 1-deoxy-D-xylulo 21.4 3E+02 0.0066 27.4 6.7 90 240-334 35-126 (389)
349 KOG2501 Thioredoxin, nucleored 21.3 4.1E+02 0.0089 22.7 6.6 82 229-310 34-119 (157)
350 PF04392 ABC_sub_bind: ABC tra 21.3 5.3E+02 0.011 24.3 8.5 70 273-345 150-228 (294)
351 cd00316 Oxidoreductase_nitroge 21.0 4.9E+02 0.011 25.8 8.5 92 240-333 126-232 (399)
352 PRK00232 pdxA 4-hydroxythreoni 20.8 4.3E+02 0.0093 25.8 7.6 73 286-363 240-325 (332)
353 PRK15438 erythronate-4-phospha 20.7 3.6E+02 0.0079 26.8 7.3 77 259-335 115-210 (378)
354 COG0673 MviM Predicted dehydro 20.7 3.7E+02 0.008 25.8 7.5 67 263-333 30-99 (342)
355 PLN02173 UDP-glucosyl transfer 20.5 1.5E+02 0.0032 30.3 4.6 36 6-47 6-42 (449)
356 PRK13181 hisH imidazole glycer 20.5 5.9E+02 0.013 22.4 8.3 59 273-335 13-82 (199)
357 PRK05749 3-deoxy-D-manno-octul 20.4 7.3E+02 0.016 24.7 9.8 100 229-333 51-155 (425)
358 PRK00207 sulfur transfer compl 20.4 1E+02 0.0022 25.3 2.8 31 3-37 1-31 (128)
359 cd06309 PBP1_YtfQ_like Peripla 20.3 6.6E+02 0.014 22.8 13.3 41 422-462 171-212 (273)
360 PF02826 2-Hacid_dh_C: D-isome 20.1 3.2E+02 0.0069 23.6 6.2 74 261-334 37-129 (178)
361 PRK13932 stationary phase surv 20.1 1.8E+02 0.004 27.1 4.8 37 6-50 6-43 (257)
362 PF05014 Nuc_deoxyrib_tr: Nucl 20.0 1.5E+02 0.0032 23.4 3.7 41 297-337 57-101 (113)
No 1
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=5.8e-83 Score=637.57 Aligned_cols=465 Identities=56% Similarity=0.998 Sum_probs=416.6
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhh
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEER 80 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
|+.| |+|+||||+.+||+|||++|++.+|+||++.|+++||+++|||+..+|..|||++.+|++|++|+.|++.|++++
T Consensus 319 ~~~~-r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r 397 (794)
T PLN02501 319 SDGK-RHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEER 397 (794)
T ss_pred ccCC-CeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHh
Confidence 3445 899999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhh
Q 012256 81 TGFTSTFDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKRE 160 (467)
Q Consensus 81 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~ 160 (467)
+++.+.+.+.|||++|+...+++++++++.+.+++++|||||+.+|.+++|++|+..|.++++|+|+++||++++|...+
T Consensus 398 ~g~~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y 477 (794)
T PLN02501 398 IGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKRE 477 (794)
T ss_pred cCCCCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999988
Q ss_pred ccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhhcccccccccCCCccccchhhHHHhhcCCCCCCceEEEEecccc
Q 012256 161 KNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW 240 (467)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~ 240 (467)
+.+.+...+.+++++++.+.|||+++++|..++++....+.++||||+.+|.|..............+.+.++|+||+.+
T Consensus 478 ~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~L~~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~ 557 (794)
T PLN02501 478 KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVW 557 (794)
T ss_pred cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHHhcccceeecccccccccCCcchhHHHHhcCCccccCceEEEEcccc
Confidence 88888888888999999888899999999888877777778789999999998765433333333333456899999999
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHH
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAE 320 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lE 320 (467)
.||++.||+|+..+.++.++++|+|+|+|++.+.++++++++++++.|+|+.++..++|+.+||||+||.+|+||++++|
T Consensus 558 EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLE 637 (794)
T PLN02501 558 AKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAE 637 (794)
T ss_pred cCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHH
Confidence 99999999999999877889999999999999999999999998999999988887899999999999999999999999
Q ss_pred HHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHHHcCCHHHHHHHHHHHHhccccccC--
Q 012256 321 ALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQAVVK-- 398 (467)
Q Consensus 321 Ama~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~~-- 398 (467)
|||||+|||+++.|+.+++.++.+|++++|+++|+++|.+++++++.......+..|||+++++++++.-++.+..+.
T Consensus 638 AMA~GlPVVATd~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a~~~~SWeAaadrLle~~~~~~~~~~~~ 717 (794)
T PLN02501 638 ALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQRYNLSWEAATQRFMEYSDLDKVLNNGD 717 (794)
T ss_pred HHHcCCCEEEecCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHHHHhhCCHHHHHHHHHHhhcccccccccc
Confidence 999999999999988877888889998889999999999999988765555556799999999999999987643332
Q ss_pred ----CCCCCCCCccccccchhHHhHHHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCCCCCCCCC
Q 012256 399 ----KPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPMSKQ 466 (467)
Q Consensus 399 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (467)
.+...++.+.......|.+.+|+++++.|++++|+|..|+.|||.||++++++|+|+++||++|.+|+
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~r~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 789 (794)
T PLN02501 718 DAKLSKSGGKSITKSVSMPNLSEMVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPHVEN 789 (794)
T ss_pred ccccccccccchhhhccCCcHHHHhhhHHHHHHHHhhccHHHHHHhcCCCCCCCcCHHHHHhcCCCCCCCCC
Confidence 11122223334444479999999999999999999999999999999999999999999999999886
No 2
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.1e-74 Score=573.38 Aligned_cols=462 Identities=80% Similarity=1.276 Sum_probs=404.4
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhh
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEER 80 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (467)
|++| |||+|+|++|+||++|++++...++++|+++|.|+|++++||+....+..+++++.+|.++++++.|++.|...+
T Consensus 1 ~~~~-mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~ 79 (462)
T PLN02846 1 MQKK-QHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEER 79 (462)
T ss_pred CCCC-CEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCe
Confidence 4544 669999999999999999999999999999997799999999988777888999999999999999999999778
Q ss_pred cCCCCCccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhh
Q 012256 81 TGFTSTFDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKRE 160 (467)
Q Consensus 81 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~ 160 (467)
+.+.+++++++||+++....+++.+..++.+.+++++|||||+++|.+++|+.++..|.+++.++++++|+++.+|...+
T Consensus 80 v~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~ 159 (462)
T PLN02846 80 ISFLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKRE 159 (462)
T ss_pred EEEecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHh
Confidence 88889999999999877777777888899999999999999999999999987789999888899999999999999877
Q ss_pred ccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhhcccccccccCCCccccchhhHHHhhcCCCCCCceEEEEecccc
Q 012256 161 KNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW 240 (467)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~ 240 (467)
+++....++.+.+.+++.+.+||.++++|..++++.+..+.+++|||..+|.+..............+.+.++|+||+.+
T Consensus 160 ~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~ 239 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVHGVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVW 239 (462)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCceechhhcCCCcccHhhhcCCCCCcceEEEEEecCcc
Confidence 76666777888888998888899999999988887766666779999999987654322111111222457999999999
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHH
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAE 320 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lE 320 (467)
.||++.||+++..+.+..++++|+|+|+|++++++++.+++++++++++++..+.+++|+.+|+||+||.+|+||++++|
T Consensus 240 eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lE 319 (462)
T PLN02846 240 SKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAE 319 (462)
T ss_pred cCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHH
Confidence 99999999999999887789999999999999999999999988777776666666899999999999999999999999
Q ss_pred HHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHHHcCCHHHHHHHHHHHHhccccccCCC
Q 012256 321 ALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQAVVKKP 400 (467)
Q Consensus 321 Ama~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~~~~ 400 (467)
|||||+|||+++.++.+++.++.||++++|.+++++++..++++++..++.+.++.|||+++++++++.|++....+..+
T Consensus 320 AmA~G~PVVa~~~~~~~~v~~~~ng~~~~~~~~~a~ai~~~l~~~~~~~~~~a~~~~SWe~~~~~l~~~~~~~~~~~~~~ 399 (462)
T PLN02846 320 ALAMGKIVVCANHPSNEFFKQFPNCRTYDDGKGFVRATLKALAEEPAPLTDAQRHELSWEAATERFLRVADLDLPSSAKP 399 (462)
T ss_pred HHHcCCcEEEecCCCcceeecCCceEecCCHHHHHHHHHHHHccCchhHHHHHHHhCCHHHHHHHHHHHhccCCcCcccc
Confidence 99999999999998789999999999999999999999999997666666677789999999999999999987665554
Q ss_pred CCCCCCccccccchhHHhHHHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCCCCCC
Q 012256 401 SKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 463 (467)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 463 (467)
......+..+....|.+.+|++++++|+.++|.|..|++|||.||++++++|+|+++||++|.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (462)
T PLN02846 400 NKSSLKNFMSTSPNLKKNMEDASAYLHNVASGFETSRRAFGAIPGSLQPDEQQCKELGLALQT 462 (462)
T ss_pred ccccccchhccCccHhhhhhhHHHHHHHHhhhhHHHHHHccCCCCCCCCCHHHHHhcCCCCCC
Confidence 444445555555567889999999999999999999999999999999999999999999883
No 3
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=5.2e-37 Score=313.57 Aligned_cols=277 Identities=17% Similarity=0.152 Sum_probs=207.0
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
.+.+.+++.+||+||++.+....+. +..+.+..+ |++.++|+..+.+........+...+.... ++ ....+|.++
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~~~~--~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~-r~-~~~~ad~ii 210 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIMVFG--ALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDII-RF-LHRAADLTL 210 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchhHHH--HHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHH-HH-HHhhCCEEE
Confidence 4667778889999999887544433 223333334 999999988766654322222222222222 22 122379999
Q ss_pred EcCHhhHHhhhc-------ccccc-cccCCCccccchhhHHHhhc--CCCCCCceEEEEeccccccCHHHHHHHHHHHHh
Q 012256 187 RLSAATQEYANS-------IICNV-HGVNPKFLEIGKKKKEQQQN--GTHAFAKGAYYIGKMVWSKGYKELLELLDDHQK 256 (467)
Q Consensus 187 ~~S~~~~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~~~~~--~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~ 256 (467)
++|+...+.... ++..+ ||+|.+.|.+.......+.. ...+++++|+|+||+.+.||++.++++++.+
T Consensus 211 ~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~-- 288 (465)
T PLN02871 211 VTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERL-- 288 (465)
T ss_pred ECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhC--
Confidence 999776643322 23333 79998888764332222221 1234567899999999999999999998764
Q ss_pred hcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 257 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 257 ~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
++++|+|+|+|++.+.+++++++ .++.|+|.+++.+ ++|+.||+||+||..|++|++++||||||+|||+|+.|
T Consensus 289 --~~~~l~ivG~G~~~~~l~~~~~~--~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g 364 (465)
T PLN02871 289 --PGARLAFVGDGPYREELEKMFAG--TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAG 364 (465)
T ss_pred --CCcEEEEEeCChHHHHHHHHhcc--CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCC
Confidence 68999999999998888888764 4789999998877 99999999999999999999999999999999999996
Q ss_pred C-cccccc---CCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHH-HHhccc
Q 012256 335 S-NDFFKQ---FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQ-VAELDQ 394 (467)
Q Consensus 335 ~-~e~v~~---~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~-~~~~~~ 394 (467)
+ .|++.+ +.+|++++ |+++++++|.++++++.. .++++++ ++|||+.+++++++ .|+.+.
T Consensus 365 g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~ 436 (465)
T PLN02871 365 GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAI 436 (465)
T ss_pred CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 6 588988 89999987 999999999999987654 4555443 68999999999998 798655
No 4
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=9.7e-37 Score=305.98 Aligned_cols=344 Identities=15% Similarity=0.117 Sum_probs=233.9
Q ss_pred eEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTST 86 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (467)
||+++++.|.|+.||.+......++.|+++| |+|.|++... +.+..... ...+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G--------------~~V~v~~~~~--~~~~~~~~-----------~~~~ 53 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRG--------------HKVVVITHAY--GNRVGIRY-----------LTNG 53 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcC--------------CeeEEEeccC--CcCCCccc-----------ccCc
Confidence 4999999999998885544555569999999 6666654310 10100000 0011
Q ss_pred ccccccCCCc-c--cc-ceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhc
Q 012256 87 FDIRFYPGKF-A--ID-KRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREK 161 (467)
Q Consensus 87 ~~~~~y~~~~-~--~~-~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~ 161 (467)
+.+...|... . .. .........+.+.+.+++|||||++.+....... +..+.+..+ |++.+.|+.+....
T Consensus 54 i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~-~~~~~~~~~~~~v~t~h~~~~~~~---- 128 (398)
T cd03796 54 LKVYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERITIVHGHQAFSALAHE-ALLHARTMGLKTVFTDHSLFGFAD---- 128 (398)
T ss_pred eeEEEecceeccCCccccchhhhHHHHHHHHHhcCCCEEEECCCCchHHHH-HHHHhhhcCCcEEEEecccccccc----
Confidence 1121111100 0 00 0111122345566778899999999765432211 223344444 88888887542100
Q ss_pred cchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhh-------hcccccc-cccCCCccccchhhHHHhhcCCCCCCceEE
Q 012256 162 NGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYA-------NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAY 233 (467)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~-------~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il 233 (467)
........+.++. ...+|.++++|+...+.. .+++..+ ||+|...|.+.... ..++++.++
T Consensus 129 ---~~~~~~~~~~~~~-~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~-------~~~~~~~i~ 197 (398)
T cd03796 129 ---ASSIHTNKLLRFS-LADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK-------RDNDKITIV 197 (398)
T ss_pred ---hhhHHhhHHHHHh-hccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc-------CCCCceEEE
Confidence 0001111111221 123799999997655321 2234444 79998777654321 123467899
Q ss_pred EEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecC
Q 012256 234 YIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPS 309 (467)
Q Consensus 234 ~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps 309 (467)
|+||+.++||++.+++|++.+.+..++++|+|+|+|+..+.+++.+++.++ +++|.|.+++.+ ++|+.||++|+||
T Consensus 198 ~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS 277 (398)
T cd03796 198 VISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTS 277 (398)
T ss_pred EEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCC
Confidence 999999999999999999999888899999999999988889999888876 588899998777 9999999999999
Q ss_pred CCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCCC--ccHH----HHHcCCHHH
Q 012256 310 TTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPAL--PTEA----QRHQLSWES 381 (467)
Q Consensus 310 ~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~~--~~~~----~~~~~sw~~ 381 (467)
..|++|++++||||||+|||+|+.|+ .|++.++. +++++ |+++++++|.+++++..+. +..+ ..++|||+.
T Consensus 278 ~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~ 356 (398)
T cd03796 278 LTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDM-ILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWED 356 (398)
T ss_pred hhhccCHHHHHHHHcCCCEEECCCCCchhheeCCc-eeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHH
Confidence 99999999999999999999999966 58887764 44445 9999999999999875442 2222 337899999
Q ss_pred HHHHHHHHHhccc
Q 012256 382 ATERFLQVAELDQ 394 (467)
Q Consensus 382 ~~~~~~~~~~~~~ 394 (467)
++++++++|+...
T Consensus 357 ~~~~~~~~y~~l~ 369 (398)
T cd03796 357 VAKRTEKVYDRIL 369 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999654
No 5
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5.1e-36 Score=302.30 Aligned_cols=274 Identities=13% Similarity=0.032 Sum_probs=199.3
Q ss_pred CCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhcc--chHHHHHHHHHHHHhhhhhcCEEEEcCHhh
Q 012256 116 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKN--GRLQAFLLKYANSWLVDIYCHKVIRLSAAT 192 (467)
Q Consensus 116 ~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 192 (467)
++||+||++.|..+.... +....+..+ |++..+|+..++.....+. +.....+...+.++.. ..+|.++++|+..
T Consensus 105 ~~~Div~~~~p~~~~~~~-~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ad~ii~~S~~~ 182 (412)
T PRK10307 105 WRPDRVIGVVPTLFCAPG-ARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLL-RRFDNVSTISRSM 182 (412)
T ss_pred CCCCEEEEeCCcHHHHHH-HHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHH-hhCCEEEecCHHH
Confidence 789999998877554331 223344444 8888888766544321111 1111122222333321 2379999999876
Q ss_pred HHhhhc------ccccc-cccCCCccccchhh--HHHh-hcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeE
Q 012256 193 QEYANS------IICNV-HGVNPKFLEIGKKK--KEQQ-QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLE 262 (467)
Q Consensus 193 ~~~~~~------~i~~i-~gvd~~~~~~~~~~--~~~~-~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~ 262 (467)
.+...+ ++.++ ||+|.+.|.+.... ...+ +...++++++++|+|++.+.||++.|++|++.+++ .++++
T Consensus 183 ~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~-~~~~~ 261 (412)
T PRK10307 183 MNKAREKGVAAEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRD-RPDLI 261 (412)
T ss_pred HHHHHHcCCCcccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhcc-CCCeE
Confidence 644322 23334 89998777653321 1122 22234456789999999999999999999998854 57899
Q ss_pred EEEEecCCCHHHHHHHHHhcCC-eeEEecCCCCHH--HHHHhcCeEEecCCCCC----CcHHHHHHHHcCCeEEEeCCCC
Q 012256 263 VDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHAD--LIFHDYKVFLNPSTTDV----VCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 263 l~i~G~g~~~~~l~~~~~~~~~-~v~~~g~~~~~~--~~~~~adv~v~ps~~e~----~~~~~lEAma~G~PVV~t~~g~ 335 (467)
|+|+|+|++.++++++++++++ +++|+|.+++.+ ++|+.||++|+||..|+ +|.+++||||||+|||+|+.|+
T Consensus 262 l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g 341 (412)
T PRK10307 262 FVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG 341 (412)
T ss_pred EEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC
Confidence 9999999998999998887766 689999998777 99999999999999988 6888999999999999999854
Q ss_pred --c-cccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHHHHHhccc
Q 012256 336 --N-DFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 336 --~-e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~ 394 (467)
. +++. .+|++++ |+++++++|.++++++.. .++++++ ++|||+.++++++++|+...
T Consensus 342 ~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 342 TELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLV 409 (412)
T ss_pred chHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 2 5665 5899887 999999999999987654 5665544 68999999999999998543
No 6
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=4.3e-35 Score=309.94 Aligned_cols=272 Identities=17% Similarity=0.113 Sum_probs=192.6
Q ss_pred CCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHh-hccch---------HHHHHHHHHHHHhhhhhcCEE
Q 012256 117 VADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKR-EKNGR---------LQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 117 ~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~d~v 185 (467)
.|||||.|.. ..++. +..+.+.+. |.|.+.|+........ ...+. .+...+...+.. ....||.|
T Consensus 310 ~pDvIHaHyw-~sG~a--a~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~-~l~~Ad~V 385 (1050)
T TIGR02468 310 WPYVIHGHYA-DAGDS--AALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEEL-SLDASEIV 385 (1050)
T ss_pred CCCEEEECcc-hHHHH--HHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHH-HHHhcCEE
Confidence 4999999842 22222 344555556 9999999753222110 00010 000111112222 33448999
Q ss_pred EEcCHhhH-Hhhh----------------------------cccccc-cccCCCccccchhhH-----------------
Q 012256 186 IRLSAATQ-EYAN----------------------------SIICNV-HGVNPKFLEIGKKKK----------------- 218 (467)
Q Consensus 186 i~~S~~~~-~~~~----------------------------~~i~~i-~gvd~~~~~~~~~~~----------------- 218 (467)
|+.|.... +... .++.+| +|||.+.|.|.....
T Consensus 386 IasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~ 465 (1050)
T TIGR02468 386 ITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPP 465 (1050)
T ss_pred EEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccch
Confidence 99995433 2110 133444 799999887632111
Q ss_pred ---HHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhh--cCCeEEEEEecCCCH-----------HHHHHHHHhc
Q 012256 219 ---EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE--LAGLEVDLYGNGEDF-----------NQIQEAAEKL 282 (467)
Q Consensus 219 ---~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~--~~~~~l~i~G~g~~~-----------~~l~~~~~~~ 282 (467)
........+++++|+|+||+.++||++.||+|+..+++. .+++. +|+|++++. ..++++++++
T Consensus 466 ~~~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 466 IWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred hhHHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 112233456678999999999999999999999998743 35665 567876642 3466777777
Q ss_pred CC--eeEEecCCCCHH--HHHHhc----CeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CH
Q 012256 283 KI--VVRVYPGRDHAD--LIFHDY----KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DR 351 (467)
Q Consensus 283 ~~--~v~~~g~~~~~~--~~~~~a----dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~ 351 (467)
++ +|.|.|.+++.+ ++|+.| |+||+||++|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~ 624 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQ 624 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCH
Confidence 77 688889988777 899887 699999999999999999999999999999966 59999999999998 99
Q ss_pred HHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhcc
Q 012256 352 NGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 393 (467)
Q Consensus 352 ~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 393 (467)
++++++|.++++++.. .++.+++ ++|||+.++++|++.|...
T Consensus 625 eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 625 QAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASC 671 (1050)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 9999999999998664 5555433 6799999999999998743
No 7
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-36 Score=273.86 Aligned_cols=342 Identities=17% Similarity=0.181 Sum_probs=237.1
Q ss_pred eEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTS 85 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (467)
+|++++++|+|..||+. ...+.+ +.|-+.| |.|.+.+.. |.+.... | ....
T Consensus 2 ~i~mVsdff~P~~ggve-shiy~lSq~li~lg--------------hkVvvitha--yg~r~gi----r-------ylt~ 53 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVE-SHIYALSQCLIRLG--------------HKVVVITHA--YGNRVGI----R-------YLTN 53 (426)
T ss_pred cceeeCcccccCCCChh-hhHHHhhcchhhcC--------------CeEEEEecc--ccCccce----e-------eecC
Confidence 39999999999999965 445444 9999999 887775431 1111110 0 0111
Q ss_pred CccccccCC---Ccccc---ceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHH
Q 012256 86 TFDIRFYPG---KFAID---KRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVK 158 (467)
Q Consensus 86 ~~~~~~y~~---~~~~~---~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~ 158 (467)
+.++.+.|. ..... ....+|+ +...+..++..++|.+.+.....++ +....+... ..+.+.|..+-
T Consensus 54 glkVyylp~~v~~n~tT~ptv~~~~Pl--lr~i~lrE~I~ivhghs~fS~lahe-~l~hartMGlktVfTdHSlfG---- 126 (426)
T KOG1111|consen 54 GLKVYYLPAVVGYNQTTFPTVFSDFPL--LRPILLRERIEIVHGHSPFSYLAHE-ALMHARTMGLKTVFTDHSLFG---- 126 (426)
T ss_pred CceEEEEeeeeeecccchhhhhccCcc--cchhhhhhceEEEecCChHHHHHHH-HHHHHHhcCceEEEecccccc----
Confidence 111111111 00000 1111222 3444556788899988776554443 333333344 67778786431
Q ss_pred hhccchHHHHHHHHHHHHhh--hhhcCEEEEcCHhhH-------Hhhhcccccc-cccCCCccccchhhHHHhhcCCCCC
Q 012256 159 REKNGRLQAFLLKYANSWLV--DIYCHKVIRLSAATQ-------EYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAF 228 (467)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~~S~~~~-------~~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~ 228 (467)
....... ..++.+. ....|++||+|...+ .+...++.++ |.++...|.|..... ...+
T Consensus 127 ---fad~~si---~~n~ll~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~------~S~~ 194 (426)
T KOG1111|consen 127 ---FADIGSI---LTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK------PSAD 194 (426)
T ss_pred ---ccchhhh---hhcceeeeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCcccc------CCCC
Confidence 1111111 1222221 122699999996633 2344566666 899999998854431 1222
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCe
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKV 304 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv 304 (467)
...|+.+||+.++||+|.++++++++++++|+++|+|+||||.+..+++..+++.+ ++.++|.+++++ +.|.+.|+
T Consensus 195 i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I 274 (426)
T KOG1111|consen 195 IITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI 274 (426)
T ss_pred eeEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE
Confidence 36899999999999999999999999999999999999999998888888877655 788999999999 99999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC---CccHHHHHcCCH
Q 012256 305 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA---LPTEAQRHQLSW 379 (467)
Q Consensus 305 ~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~---~~~~~~~~~~sw 379 (467)
|++||.+|.||++++|||+||+|||+|++|| .|++.++ .-.+.+ +++++++++.++++.-.. .+.+...+.|+|
T Consensus 275 FlntSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h~~v~~~y~w 353 (426)
T KOG1111|consen 275 FLNTSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKKMYSW 353 (426)
T ss_pred EeccHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceeccCCChHHHHHHHHHHHHHhccCchhHHHHHHHhccH
Confidence 9999999999999999999999999999977 4777765 223334 899999999999886544 334455688999
Q ss_pred HHHHHHHHHHHhccccc
Q 012256 380 ESATERFLQVAELDQAV 396 (467)
Q Consensus 380 ~~~~~~~~~~~~~~~~~ 396 (467)
++++++.+.+|..+...
T Consensus 354 ~dVa~rTekvy~r~~~t 370 (426)
T KOG1111|consen 354 KDVAERTEKVYDRAATT 370 (426)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999977644
No 8
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.9e-34 Score=282.42 Aligned_cols=348 Identities=18% Similarity=0.192 Sum_probs=238.2
Q ss_pred eEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTST 86 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (467)
||++++..|+|..+|++......+++|+++| |+|.+++............. ...+.
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g--------------~~v~~~~~~~~~~~~~~~~~----------~~~~~ 56 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARG--------------HEVLVIAPGPFRESEGPARV----------VPVPS 56 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCC--------------CEEEEEeCCchhhccCCCCc----------eeecc
Confidence 4999999999998886655454559999999 66655433200000000000 00000
Q ss_pred ccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchH
Q 012256 87 FDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRL 165 (467)
Q Consensus 87 ~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (467)
.....+.. ..........+.+.+++.+||+||++.+..+.+. +..+.++.+ |++..+|+.++.+.........
T Consensus 57 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 130 (364)
T cd03814 57 VPLPGYPE----IRLALPPRRRVRRLLDAFAPDVVHIATPGPLGLA--ALRAARRLGIPVVTSYHTDFPEYLRYYGLGPL 130 (364)
T ss_pred cccCcccc----eEecccchhhHHHHHHhcCCCEEEEeccchhhHH--HHHHHHHcCCCEEEEEecChHHHhhhcccchH
Confidence 11111111 0111112234556667889999999876655544 334554455 8999999887766543222222
Q ss_pred HHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhhc----ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEecccc
Q 012256 166 QAFLLKYANSWLVDIYCHKVIRLSAATQEYANS----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW 240 (467)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~ 240 (467)
............ ..+|.++++|+...+.... .+..+ +|+|...+.+..............+++.++|+|++.+
T Consensus 131 ~~~~~~~~~~~~--~~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~ 208 (364)
T cd03814 131 SWLAWAYLRWFH--NRADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLGPPDRPVLLYVGRLAP 208 (364)
T ss_pred hHhhHHHHHHHH--HhCCEEEeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhCCCCCeEEEEEecccc
Confidence 222122222221 2279999999876653322 22223 6999887765443322222222344678999999999
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHH
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTT 318 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~ 318 (467)
.||++.+++++..+.++ ++++++|+|+|++.+.++ ....++.+.|.+++.+ ++|+.||++++||..|++|+++
T Consensus 209 ~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~ 283 (364)
T cd03814 209 EKNLEALLDADLPLRRR-PPVRLVIVGDGPARARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVV 283 (364)
T ss_pred ccCHHHHHHHHHHhhhc-CCceEEEEeCCchHHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHH
Confidence 99999999999999877 899999999998876655 3344899999988777 9999999999999999999999
Q ss_pred HHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHH
Q 012256 319 AEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVA 390 (467)
Q Consensus 319 lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~ 390 (467)
+||||||+|||+++.++ .+++.++.+|++++ |.++++++|.+++++++. .++.+++ ++|+|++++++++++|
T Consensus 284 lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 284 LEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred HHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 99999999999999966 58888888998887 888999999999998765 4444444 5899999999999988
Q ss_pred h
Q 012256 391 E 391 (467)
Q Consensus 391 ~ 391 (467)
+
T Consensus 364 ~ 364 (364)
T cd03814 364 R 364 (364)
T ss_pred C
Confidence 4
No 9
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=7.4e-34 Score=284.51 Aligned_cols=265 Identities=14% Similarity=0.100 Sum_probs=200.7
Q ss_pred hhccCCCCCCCEEEecCCccccchhhhhhhhc--cC-CcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 109 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKT--KF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 109 l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~--~~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
+...+++.+||+||++........ ..+.. .. .+++.++|+.+..... .. ......+...+ ..+|.+
T Consensus 110 ~~~~~~~~~~diihaH~~~~~~~~---~~~~~~~~~~~~~~~t~Hg~d~~~~~--~~----~~~~~~~~~~~--~~ad~v 178 (406)
T PRK15427 110 CAQVATPFVADVFIAHFGPAGVTA---AKLRELGVLRGKIATIFHGIDISSRE--VL----NHYTPEYQQLF--RRGDLM 178 (406)
T ss_pred HhhhhccCCCCEEEEcCChHHHHH---HHHHHhCCCCCCeEEEEcccccccch--hh----hhhhHHHHHHH--HhCCEE
Confidence 455667889999999875432221 11221 22 3678899986532111 00 01111122222 226999
Q ss_pred EEcCHhhHHhhh------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhc
Q 012256 186 IRLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 258 (467)
Q Consensus 186 i~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~ 258 (467)
+++|+...+... +++..+ ||+|.+.|.+.... .......++|+||+.+.||++.+++|+..++++.
T Consensus 179 v~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~-------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~ 251 (406)
T PRK15427 179 LPISDLWAGRLQKMGCPPEKIAVSRMGVDMTRFSPRPVK-------APATPLEIISVARLTEKKGLHVAIEACRQLKEQG 251 (406)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEcCCCCCHHHcCCCccc-------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhC
Confidence 999986554332 233344 79998877653221 1123457999999999999999999999998888
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCC------CCCcHHHHHHHHcCCeE
Q 012256 259 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTT------DVVCTTTAEALAMGKIV 328 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~------e~~~~~~lEAma~G~PV 328 (467)
++++++|+|+|+..+++++.++++++ ++.|.|.+++.+ ++|+.||+||+||.. ||+|++++||||||+||
T Consensus 252 ~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PV 331 (406)
T PRK15427 252 VAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPV 331 (406)
T ss_pred CCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCE
Confidence 89999999999999999999998876 688889999888 999999999999974 99999999999999999
Q ss_pred EEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHh-cCCC--CccHHHH----HcCCHHHHHHHHHHHHh
Q 012256 329 VCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALA-EEPA--LPTEAQR----HQLSWESATERFLQVAE 391 (467)
Q Consensus 329 V~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~-~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 391 (467)
|+|+.|+ .|++.++.+|++++ |+++++++|.++++ +++. .++++++ ++|+|+..++++.++|+
T Consensus 332 I~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 332 VSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999966 59999999999987 99999999999999 6543 5665544 78999999999999987
No 10
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.4e-34 Score=293.58 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=164.3
Q ss_pred hcCEEEEcCHhhHHhhh----------------cccccc-cccCCCccccchh------------------hHHHhhc-C
Q 012256 181 YCHKVIRLSAATQEYAN----------------SIICNV-HGVNPKFLEIGKK------------------KKEQQQN-G 224 (467)
Q Consensus 181 ~~d~vi~~S~~~~~~~~----------------~~i~~i-~gvd~~~~~~~~~------------------~~~~~~~-~ 224 (467)
.||.++++|+...+... .++..| ||||.+.|.|... ....+.. +
T Consensus 197 ~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g 276 (466)
T PRK00654 197 YADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFG 276 (466)
T ss_pred hcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhC
Confidence 37999999976543221 234444 8999988876321 1111222 2
Q ss_pred C-CCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHH--HHH
Q 012256 225 T-HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIF 299 (467)
Q Consensus 225 ~-~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~--~~~ 299 (467)
. .++.++++|+||+.++||++.+++|++++.+. +++|+|+|+|+. .+.+++++++++.++.+.++.+... .+|
T Consensus 277 l~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 277 LPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred CCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 2 23578999999999999999999999998754 799999999864 4678888888887777665554443 789
Q ss_pred HhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccC------CCEEeeC--CHHHHHHHHHHHHhc---CCC
Q 012256 300 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF------PNCRTYD--DRNGFVEATLKALAE---EPA 367 (467)
Q Consensus 300 ~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~------~~g~~~~--~~~~l~~~i~~~l~~---~~~ 367 (467)
+.||+||+||.+|++|++++||||||+|+|+++.|+ .|++.++ .+|++++ |+++++++|.++++. ++.
T Consensus 355 ~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~ 434 (466)
T PRK00654 355 AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPL 434 (466)
T ss_pred hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999999999966 5888887 8999987 999999999998873 222
Q ss_pred --CccHHHH-HcCCHHHHHHHHHHHHhcc
Q 012256 368 --LPTEAQR-HQLSWESATERFLQVAELD 393 (467)
Q Consensus 368 --~~~~~~~-~~~sw~~~~~~~~~~~~~~ 393 (467)
.++.++. +.|||+.++++++++|+..
T Consensus 435 ~~~~~~~~~~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 435 WRALQRQAMAQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 3444443 6899999999999999843
No 11
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=6.9e-34 Score=282.58 Aligned_cols=277 Identities=17% Similarity=0.118 Sum_probs=202.5
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhh-hhhhhcc-CCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHH-GKRWKTK-FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~-~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
..+.+.+++.+||+||++.+....+... .....+. ..|++.++|+.+...... .... ....... ...||.
T Consensus 74 ~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--~~~~----~~~~~~~--~~~~d~ 145 (371)
T cd04962 74 SKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQ--DPSF----QPATRFS--IEKSDG 145 (371)
T ss_pred HHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccc--cccc----hHHHHHH--HhhCCE
Confidence 4566777888999999975433222210 1122222 238888999765432211 1111 1111111 123799
Q ss_pred EEEcCHhhHHhhh------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 185 VIRLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 185 vi~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
++++|+...+... +++..+ ||+|...+.+........+....++.+.++|+|++.+.||++.+++++..+.++
T Consensus 146 ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~ 225 (371)
T cd04962 146 VTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE 225 (371)
T ss_pred EEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc
Confidence 9999987654332 233333 788877665543322222333344577899999999999999999999998765
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
.+++++++|+|++.+.+++.+++.+. ++.|+|..++..++|+.||++|+||..|++|++++|||+||+|||+|+.|+
T Consensus 226 -~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~ 304 (371)
T cd04962 226 -VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGG 304 (371)
T ss_pred -CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCC
Confidence 56899999999998889888888765 688889877666999999999999999999999999999999999999966
Q ss_pred -ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHH----HHcCCHHHHHHHHHHHHhc
Q 012256 336 -NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 392 (467)
Q Consensus 336 -~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 392 (467)
.|++.++.+|++++ |+++++++|.++++++.. .+++++ .++|||+.+++++.+.|+.
T Consensus 305 ~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 305 IPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYRR 370 (371)
T ss_pred chhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 58999999999988 999999999999987654 444433 3689999999999999973
No 12
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=4.8e-34 Score=287.37 Aligned_cols=274 Identities=17% Similarity=0.133 Sum_probs=196.7
Q ss_pred CCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhcc-chHHHHHHHHHHHHhhhhhcCEEEEcCHhhH
Q 012256 116 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKN-GRLQAFLLKYANSWLVDIYCHKVIRLSAATQ 193 (467)
Q Consensus 116 ~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~ 193 (467)
.+||+||++.... .+. +..+.+..+ |++.++|+........... ........+...+. ....||.++++|+...
T Consensus 100 ~~~Diih~h~~~~-~~~--~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~d~vi~~s~~~~ 175 (405)
T TIGR03449 100 GYYDLIHSHYWLS-GQV--GWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQ-LVDNADRLIANTDEEA 175 (405)
T ss_pred CCCCeEEechHHH-HHH--HHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHH-HHHhcCeEEECCHHHH
Confidence 4799999986322 121 222333334 8999999864211110000 00011122222222 1223799999997643
Q ss_pred -Hhhh------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCC--eEE
Q 012256 194 -EYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG--LEV 263 (467)
Q Consensus 194 -~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~--~~l 263 (467)
.+.. .++..+ ||+|.+.|.+........+...+++++.|+|+|++.+.||++.++++++.+.++.++ ++|
T Consensus 176 ~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l 255 (405)
T TIGR03449 176 RDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRV 255 (405)
T ss_pred HHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEE
Confidence 3322 223334 899988776543222222233344577999999999999999999999999877776 999
Q ss_pred EEEec----C-CCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 264 DLYGN----G-EDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 264 ~i~G~----g-~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
+|+|+ | +..+.+++.++++++ +++|.|.+++.+ ++|+.||++|+||..|++|++++||||||+|||+++.|
T Consensus 256 ~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~ 335 (405)
T TIGR03449 256 IVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVG 335 (405)
T ss_pred EEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCC
Confidence 99995 3 445678888888876 688899998777 99999999999999999999999999999999999996
Q ss_pred C-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhcc
Q 012256 335 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 393 (467)
Q Consensus 335 ~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 393 (467)
+ .|++.++.+|++++ |+++++++|.++++++.. .++.+++ ++|||+.++++++++|+..
T Consensus 336 ~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~~ 402 (405)
T TIGR03449 336 GLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLLSSYRDA 402 (405)
T ss_pred CcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6 58999999999987 999999999999987543 4444333 6799999999999999843
No 13
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1.9e-33 Score=286.29 Aligned_cols=212 Identities=17% Similarity=0.190 Sum_probs=158.6
Q ss_pred hcCEEEEcCHhhHHhhh----------------cccccc-cccCCCccccchhh------------------HHHhhcCC
Q 012256 181 YCHKVIRLSAATQEYAN----------------SIICNV-HGVNPKFLEIGKKK------------------KEQQQNGT 225 (467)
Q Consensus 181 ~~d~vi~~S~~~~~~~~----------------~~i~~i-~gvd~~~~~~~~~~------------------~~~~~~~~ 225 (467)
.||.|+++|+...+... .++..| ||||++.|.|.... ...++...
T Consensus 209 ~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g 288 (485)
T PRK14099 209 LADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFG 288 (485)
T ss_pred hcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcC
Confidence 37999999977553221 234444 89999888764321 11122222
Q ss_pred -C--CCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCee-EEecCCCCHHHHH
Q 012256 226 -H--AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVV-RVYPGRDHADLIF 299 (467)
Q Consensus 226 -~--~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v-~~~g~~~~~~~~~ 299 (467)
+ ++.+.++++||+.++||++.+++|+..+.+. +++|+|+|+|+. .+.+++++++++.++ .+.|..+....+|
T Consensus 289 l~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~ 366 (485)
T PRK14099 289 LDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLI 366 (485)
T ss_pred CCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHH
Confidence 2 3467899999999999999999999998753 789999999874 566888877766555 4567622222555
Q ss_pred -HhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccC---------CCEEeeC--CHHHHHHHHHH---HHh
Q 012256 300 -HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVEATLK---ALA 363 (467)
Q Consensus 300 -~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~---------~~g~~~~--~~~~l~~~i~~---~l~ 363 (467)
+.||+||+||.+|++|++++||||||+|+|++++|+ .|++.++ .+|++++ |+++++++|.+ +++
T Consensus 367 ~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~ 446 (485)
T PRK14099 367 QAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFA 446 (485)
T ss_pred HhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999888899966 5877664 5899987 99999999997 455
Q ss_pred cCCC--CccHHHH-HcCCHHHHHHHHHHHHhccc
Q 012256 364 EEPA--LPTEAQR-HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 364 ~~~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 394 (467)
+++. .++++++ +.|||+.++++++++|+...
T Consensus 447 d~~~~~~l~~~~~~~~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 447 DPVAWRRLQRNGMTTDVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred CHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHH
Confidence 5433 4444443 68999999999999998543
No 14
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.4e-33 Score=286.14 Aligned_cols=278 Identities=17% Similarity=0.183 Sum_probs=186.5
Q ss_pred hhccCCC--CCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhh-ccc----hHHHH--HHHH--HHHH
Q 012256 109 ISEVIPD--EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKRE-KNG----RLQAF--LLKY--ANSW 176 (467)
Q Consensus 109 l~~~l~~--~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~-~~~----~~~~~--~~~~--~~~~ 176 (467)
+.+.+++ .+|||||++... ..+. +..+.+..+ |++.+.|+......... ..+ ..... +... ..++
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~-~~~~--~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYAD-AGYV--GARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEE 180 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchh-HHHH--HHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHH
Confidence 4455543 379999998642 2222 223333334 99999997432211100 000 00000 0000 1111
Q ss_pred hhhhhcCEEEEcCHh-hHHh-------hhcccccc-cccCCCccccchhhH-------HHhhcCCCCCCceEEEEecccc
Q 012256 177 LVDIYCHKVIRLSAA-TQEY-------ANSIICNV-HGVNPKFLEIGKKKK-------EQQQNGTHAFAKGAYYIGKMVW 240 (467)
Q Consensus 177 ~~~~~~d~vi~~S~~-~~~~-------~~~~i~~i-~gvd~~~~~~~~~~~-------~~~~~~~~~~~~~il~vGrl~~ 240 (467)
....+|.+|++|.. ..+. ..+++.++ ||||.+.|.+..... ..+.....++.++++|+||+.+
T Consensus 181 -~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~ 259 (439)
T TIGR02472 181 -TLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDR 259 (439)
T ss_pred -HHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCcc
Confidence 12237999999953 2221 23455555 899998887642211 1112223445678999999999
Q ss_pred ccCHHHHHHHHHHHHh--hcCCeEEEEEecCCCHHH-----------HHHHHHhcCC--eeEEecCCCCHH--HHHHhc-
Q 012256 241 SKGYKELLELLDDHQK--ELAGLEVDLYGNGEDFNQ-----------IQEAAEKLKI--VVRVYPGRDHAD--LIFHDY- 302 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~--~~~~~~l~i~G~g~~~~~-----------l~~~~~~~~~--~v~~~g~~~~~~--~~~~~a- 302 (467)
.||++.+++|+..+.+ ..+++ ++|+|+|++... +.+++.++++ +++|.|.++..+ ++|+.|
T Consensus 260 ~Kg~~~li~A~~~l~~~~~~~~l-~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~ 338 (439)
T TIGR02472 260 RKNIPSLVEAYGRSPKLQEMANL-VLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAA 338 (439)
T ss_pred cCCHHHHHHHHHhChhhhhhccE-EEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHh
Confidence 9999999999986432 22444 246788775322 3344555555 688889887766 889877
Q ss_pred ---CeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH
Q 012256 303 ---KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR 374 (467)
Q Consensus 303 ---dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~ 374 (467)
|+||+||..|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .++++++
T Consensus 339 ~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 339 RSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred hcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999999999999999999966 58999999999987 999999999999998655 5555443
Q ss_pred ----HcCCHHHHHHHHHHHHh
Q 012256 375 ----HQLSWESATERFLQVAE 391 (467)
Q Consensus 375 ----~~~sw~~~~~~~~~~~~ 391 (467)
++|||+.++++++++.+
T Consensus 419 ~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 419 EGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHhCCHHHHHHHHHHHhC
Confidence 68999999999998763
No 15
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=3.3e-33 Score=286.34 Aligned_cols=210 Identities=19% Similarity=0.240 Sum_probs=166.3
Q ss_pred hcCEEEEcCHhhHH-hhh---------------cccccc-cccCCCccccchh------------------hHHHhhcCC
Q 012256 181 YCHKVIRLSAATQE-YAN---------------SIICNV-HGVNPKFLEIGKK------------------KKEQQQNGT 225 (467)
Q Consensus 181 ~~d~vi~~S~~~~~-~~~---------------~~i~~i-~gvd~~~~~~~~~------------------~~~~~~~~~ 225 (467)
+||.++++|+...+ +.. .++..+ ||||.+.|.|... ....++...
T Consensus 205 ~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g 284 (473)
T TIGR02095 205 YADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELG 284 (473)
T ss_pred hCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcC
Confidence 37999999976543 221 234344 8999988876321 111122222
Q ss_pred -C--CCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCC--CHHHHHHHHHhcCCeeEEecCCCCHH--HH
Q 012256 226 -H--AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLKIVVRVYPGRDHAD--LI 298 (467)
Q Consensus 226 -~--~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~--~~ 298 (467)
+ ++.++++|+||+.++||++.+++|+..+.+. +++|+|+|+|+ ..+.+++++++.+.++.+.+.++... .+
T Consensus 285 l~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 285 LPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 2 2578999999999999999999999999754 59999999995 34668888877777788888887766 89
Q ss_pred HHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccC------CCEEeeC--CHHHHHHHHHHHHh----cC
Q 012256 299 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF------PNCRTYD--DRNGFVEATLKALA----EE 365 (467)
Q Consensus 299 ~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~------~~g~~~~--~~~~l~~~i~~~l~----~~ 365 (467)
|+.||++++||.+|++|++++|||+||+|||+|+.|+ .|++.++ .+|++++ |+++++++|.+++. ++
T Consensus 363 ~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~ 442 (473)
T TIGR02095 363 YAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDP 442 (473)
T ss_pred HHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999999999966 5889887 8999987 99999999999887 43
Q ss_pred CC--CccHHHH-HcCCHHHHHHHHHHHHhc
Q 012256 366 PA--LPTEAQR-HQLSWESATERFLQVAEL 392 (467)
Q Consensus 366 ~~--~~~~~~~-~~~sw~~~~~~~~~~~~~ 392 (467)
.. .+++++. ++|||++++++++++|+.
T Consensus 443 ~~~~~~~~~~~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 443 SLWEALQKNAMSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 32 4444444 689999999999999973
No 16
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=4.7e-33 Score=278.88 Aligned_cols=269 Identities=16% Similarity=0.123 Sum_probs=193.2
Q ss_pred cCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhh--hhhcCEEEEcC
Q 012256 112 VIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLV--DIYCHKVIRLS 189 (467)
Q Consensus 112 ~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~~S 189 (467)
.+...++|+||++......+. .....+ .+++..+|.... ......+..+......+..+.. ...+|.++++|
T Consensus 89 ~~~~~~~Dvi~~~~~~~~~~~---~~~~~~-~~~i~~~h~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s 162 (392)
T cd03805 89 LLPDEKYDVFIVDQVSACVPL---LKLFSP-SKILFYCHFPDQ--LLAQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNS 162 (392)
T ss_pred hcccCCCCEEEEcCcchHHHH---HHHhcC-CcEEEEEecChH--HhcCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcC
Confidence 355679999998753322221 122212 588888885332 2111222222222222222222 22389999999
Q ss_pred HhhHHhhhc-------c-cccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhc--
Q 012256 190 AATQEYANS-------I-ICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL-- 258 (467)
Q Consensus 190 ~~~~~~~~~-------~-i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~-- 258 (467)
+..++...+ . +.++ ||+|.+.|.+.............++.+.++++||+.+.||++.+++++..+.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~ 242 (392)
T cd03805 163 NFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAE 242 (392)
T ss_pred hhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhccc
Confidence 876654322 1 1133 7999887765433211122223455778999999999999999999999998876
Q ss_pred -CCeEEEEEecCCCH--------HHHHHHHHh-cCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHc
Q 012256 259 -AGLEVDLYGNGEDF--------NQIQEAAEK-LKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAM 324 (467)
Q Consensus 259 -~~~~l~i~G~g~~~--------~~l~~~~~~-~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~ 324 (467)
++++|+++|+|+.. +++++.+++ .++ ++.|+|.++..+ ++|+.||++++||..|+||++++|||||
T Consensus 243 ~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~ 322 (392)
T cd03805 243 FKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYA 322 (392)
T ss_pred ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHc
Confidence 89999999988652 668888877 655 789999998887 8999999999999999999999999999
Q ss_pred CCeEEEeCCCC-ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHH----HHcCCHHHHHHHH
Q 012256 325 GKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERF 386 (467)
Q Consensus 325 G~PVV~t~~g~-~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~ 386 (467)
|+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .+++++ .++|||+.+++++
T Consensus 323 G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 323 GKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred CCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 99999999966 58999988999888 999999999999998754 455543 3789999998764
No 17
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.2e-32 Score=274.36 Aligned_cols=343 Identities=12% Similarity=0.093 Sum_probs=228.0
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCC
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFT 84 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (467)
++|+.+.+.. ..|| +.+.+..+ .+|.++| +++.|+... +......... .
T Consensus 2 ~~il~ii~~~--~~GG-~e~~~~~l~~~l~~~~--------------~~~~v~~~~----~~~~~~~~~~----~----- 51 (374)
T TIGR03088 2 PLIVHVVYRF--DVGG-LENGLVNLINHLPADR--------------YRHAVVALT----EVSAFRKRIQ----R----- 51 (374)
T ss_pred ceEEEEeCCC--CCCc-HHHHHHHHHhhccccc--------------cceEEEEcC----CCChhHHHHH----h-----
Confidence 5699998887 3455 65666654 9999999 776664321 1111111000 0
Q ss_pred CCccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cE-EEEEecchHHHHHhhcc
Q 012256 85 STFDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YV-VGIVHTNYLEYVKREKN 162 (467)
Q Consensus 85 ~~~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~-v~~~h~~~~~~~~~~~~ 162 (467)
.++.+...+... ...+.....+.+.+++.+||+||++++...... ......+ +. +...|+....... .
T Consensus 52 ~~i~~~~~~~~~---~~~~~~~~~l~~~l~~~~~Divh~~~~~~~~~~----~~~~~~~~~~~i~~~h~~~~~~~~--~- 121 (374)
T TIGR03088 52 PDVAFYALHKQP---GKDVAVYPQLYRLLRQLRPDIVHTRNLAALEAQ----LPAALAGVPARIHGEHGRDVFDLD--G- 121 (374)
T ss_pred cCceEEEeCCCC---CCChHHHHHHHHHHHHhCCCEEEEcchhHHHHH----HHHHhcCCCeEEEeecCcccccch--h-
Confidence 011111111100 111222345677788899999999865332211 1111112 32 3333432211110 0
Q ss_pred chHHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhh-------cccccc-cccCCCccccchhhH--HHhhcCCCCCCceE
Q 012256 163 GRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKK--EQQQNGTHAFAKGA 232 (467)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~--~~~~~~~~~~~~~i 232 (467)
..+....+.++. ...+|.++++|+...+... .++..+ ||+|.+.|.+..... .........+++++
T Consensus 122 ---~~~~~~~~~~~~-~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i 197 (374)
T TIGR03088 122 ---SNWKYRWLRRLY-RPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVV 197 (374)
T ss_pred ---hHHHHHHHHHHH-HhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEE
Confidence 011222333332 2236999999987665432 223334 799988776543211 11122234456799
Q ss_pred EEEeccccccCHHHHHHHHHHHHhhcC----CeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEE
Q 012256 233 YYIGKMVWSKGYKELLELLDDHQKELA----GLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFL 306 (467)
Q Consensus 233 l~vGrl~~~Kg~~~li~a~~~l~~~~~----~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v 306 (467)
+|+||+.+.||++.+++++..+.++.+ +++|+++|+|+..+.+++.++++++ .+.|.|...+..++|+.||++|
T Consensus 198 ~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v 277 (374)
T TIGR03088 198 GTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFV 277 (374)
T ss_pred EEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEE
Confidence 999999999999999999999987654 7899999999988889999888876 4667787666669999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHH----HHcC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQL 377 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~ 377 (467)
+||..|++|++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .+++++ .++|
T Consensus 278 ~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~f 357 (374)
T TIGR03088 278 LPSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQF 357 (374)
T ss_pred eccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999966 59999999999887 999999999999987654 344433 3789
Q ss_pred CHHHHHHHHHHHHhc
Q 012256 378 SWESATERFLQVAEL 392 (467)
Q Consensus 378 sw~~~~~~~~~~~~~ 392 (467)
||+.++++++++|+.
T Consensus 358 s~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 358 SINAMVAAYAGLYDQ 372 (374)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999974
No 18
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=4.6e-33 Score=272.55 Aligned_cols=249 Identities=13% Similarity=0.061 Sum_probs=189.5
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
..+.+.+++.+||+||++......+. ......|++.+.|+....... .. .......+.++
T Consensus 77 ~~~~~~~~~~~~Divh~~~~~~~~~~-----~~~~~~~~v~~~h~~~~~~~~---------~~------~~~~~~~~~~~ 136 (335)
T cd03802 77 ALAERALAAGDFDIVHNHSLHLPLPF-----ARPLPVPVVTTLHGPPDPELL---------KL------YYAARPDVPFV 136 (335)
T ss_pred HHHHHHHhcCCCCEEEecCcccchhh-----hcccCCCEEEEecCCCCcccc---------hH------HHhhCcCCeEE
Confidence 34667778889999999876554331 111223889999987643331 00 11122358899
Q ss_pred EcCHhhHHhhhc--ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEE
Q 012256 187 RLSAATQEYANS--IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEV 263 (467)
Q Consensus 187 ~~S~~~~~~~~~--~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l 263 (467)
++|+........ .+..+ ||+|.+.|.+.. ..+..++|+||+.+.||++.+++++.. .++++
T Consensus 137 ~~s~~~~~~~~~~~~~~vi~ngvd~~~~~~~~-----------~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l 200 (335)
T cd03802 137 SISDAQRRPWPPLPWVATVHNGIDLDDYPFRG-----------PKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPL 200 (335)
T ss_pred EecHHHHhhcccccccEEecCCcChhhCCCCC-----------CCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeE
Confidence 999776644433 34444 799988776521 124579999999999999999999754 47999
Q ss_pred EEEecCCCHHHHHHHHHhc---CCeeEEecCCCCHH--HHHHhcCeEEecCC-CCCCcHHHHHHHHcCCeEEEeCCCC-c
Q 012256 264 DLYGNGEDFNQIQEAAEKL---KIVVRVYPGRDHAD--LIFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPS-N 336 (467)
Q Consensus 264 ~i~G~g~~~~~l~~~~~~~---~~~v~~~g~~~~~~--~~~~~adv~v~ps~-~e~~~~~~lEAma~G~PVV~t~~g~-~ 336 (467)
+|+|+|++.+.+....++. ..++.|+|.+++.+ ++|+.+|++|+||. .|++|++++||||||+|||+|+.|+ .
T Consensus 201 ~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~ 280 (335)
T cd03802 201 KLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVP 280 (335)
T ss_pred EEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCch
Confidence 9999998876666655544 45899999998877 89999999999997 5999999999999999999999966 5
Q ss_pred cccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHHHcCCHHHHHHHHHHHHh
Q 012256 337 DFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 337 e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~ 391 (467)
|++.++.+|++++++++++++|.++++.+.....+...++|||+.++++++++|+
T Consensus 281 e~i~~~~~g~l~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 281 EVVEDGVTGFLVDSVEELAAAVARADRLDRAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred hheeCCCcEEEeCCHHHHHHHHHHHhccHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 8999988999999999999999998665433333344589999999999999985
No 19
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=9.6e-33 Score=287.90 Aligned_cols=379 Identities=15% Similarity=0.132 Sum_probs=232.9
Q ss_pred ceEEEEEeccCCcc-ccccchhHHHH-HHhhhcCCccEEEEeeecCCCC-C-cccc---CCCc--ccCCcchhHHHHHHH
Q 012256 6 QHIAIFTTASLPWL-TGTAVNPLFRA-AYLAKDGETRVTLVIPWLSLID-Q-KLVY---PENI--TFTSPKQHETYVRRW 76 (467)
Q Consensus 6 ~~I~iv~~~~~P~~-~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~~~-~-v~v~---~~~~--~~~~~~~~~~~~~~~ 76 (467)
+||++|++.+.|+. +||-...+..+ ++|++.| |+|.+++|....-. + +.-. .... .+..+.. +.+.|
T Consensus 482 mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G-hdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~---~~~v~ 557 (977)
T PLN02939 482 LHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG-HLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLF---KNKIW 557 (977)
T ss_pred CEEEEEEcccccccccccHHHHHHHHHHHHHHcC-CeEEEEeCCCcccChhhhhcccccceEEEEeecCcee---EEEEE
Confidence 34999999999975 66555556555 9999999 99999999764321 1 1000 0000 0000000 00000
Q ss_pred HhhhcCCCCCccccccC-----------CCc---cccceeccchhhhhccCC--CCCCCEEEecCCccccchh-hhhhhh
Q 012256 77 LEERTGFTSTFDIRFYP-----------GKF---AIDKRSILGVGDISEVIP--DEVADIAVLEEPEHLTWFH-HGKRWK 139 (467)
Q Consensus 77 ~~~~~~~~~~~~~~~y~-----------~~~---~~~~~~~~~~~~l~~~l~--~~~~DvI~~~~~~~~~~~~-~~~~~~ 139 (467)
. +..+++++.+.. .-| ....++.+.......++. .++|||||+++........ ....+.
T Consensus 558 ~----~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~ 633 (977)
T PLN02939 558 T----GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYA 633 (977)
T ss_pred E----EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHh
Confidence 0 011112221110 001 011122111111222332 4799999998754322210 011110
Q ss_pred -ccC--CcEEEEEecchHH------HHHhhccch--H--HHH----HHHHHHHHh-hhhhcCEEEEcCHhhHHh-hh---
Q 012256 140 -TKF--RYVVGIVHTNYLE------YVKREKNGR--L--QAF----LLKYANSWL-VDIYCHKVIRLSAATQEY-AN--- 197 (467)
Q Consensus 140 -~~~--~~~v~~~h~~~~~------~~~~~~~~~--~--~~~----~~~~~~~~~-~~~~~d~vi~~S~~~~~~-~~--- 197 (467)
..+ .+++.++|+.... .....+.+. + ... ....++.+- .-.+||.|+++|+...+. ..
T Consensus 634 ~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G 713 (977)
T PLN02939 634 PKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGG 713 (977)
T ss_pred hccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhc
Confidence 011 2789999975311 111001110 0 000 011122221 122489999999775522 11
Q ss_pred -----------cccccc-cccCCCccccchh------------------hHHHhhcCC-C---CCCceEEEEeccccccC
Q 012256 198 -----------SIICNV-HGVNPKFLEIGKK------------------KKEQQQNGT-H---AFAKGAYYIGKMVWSKG 243 (467)
Q Consensus 198 -----------~~i~~i-~gvd~~~~~~~~~------------------~~~~~~~~~-~---~~~~~il~vGrl~~~Kg 243 (467)
.++..| ||||.+.|.|... ....++... + ++.++|+||||+.++||
T Consensus 714 ~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKG 793 (977)
T PLN02939 714 RGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKG 793 (977)
T ss_pred cchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccC
Confidence 123334 8999988876432 111222222 2 34689999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCCCH---HHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcH
Q 012256 244 YKELLELLDDHQKELAGLEVDLYGNGEDF---NQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCT 316 (467)
Q Consensus 244 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~---~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~ 316 (467)
++.+++|+..+.+ ++++|+|+|+|++. +.+++++++++. +|.|.|.+++.. .+|+.||+||+||.+|+||+
T Consensus 794 iDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGL 871 (977)
T PLN02939 794 VHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGL 871 (977)
T ss_pred hHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcH
Confidence 9999999988764 47899999999763 567777777765 688889988765 79999999999999999999
Q ss_pred HHHHHHHcCCeEEEeCCCC-cccccc---------CCCEEeeC--CHHHHHHHHHHHHh----cCCC--CccHHH-HHcC
Q 012256 317 TTAEALAMGKIVVCANHPS-NDFFKQ---------FPNCRTYD--DRNGFVEATLKALA----EEPA--LPTEAQ-RHQL 377 (467)
Q Consensus 317 ~~lEAma~G~PVV~t~~g~-~e~v~~---------~~~g~~~~--~~~~l~~~i~~~l~----~~~~--~~~~~~-~~~~ 377 (467)
+++|||+||+|+|++++|+ .|.|.+ +.||++++ |+++|+++|.++++ ++.. .++.++ ...|
T Consensus 872 vqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~~dF 951 (977)
T PLN02939 872 TQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMNIDF 951 (977)
T ss_pred HHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcC
Confidence 9999999999999999977 577754 47899987 99999999999876 3222 344433 3689
Q ss_pred CHHHHHHHHHHHHhccc
Q 012256 378 SWESATERFLQVAELDQ 394 (467)
Q Consensus 378 sw~~~~~~~~~~~~~~~ 394 (467)
||+.++++|+++|+...
T Consensus 952 SWe~~A~qYeeLY~~ll 968 (977)
T PLN02939 952 SWDSSASQYEELYQRAV 968 (977)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998544
No 20
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.5e-32 Score=291.73 Aligned_cols=358 Identities=16% Similarity=0.140 Sum_probs=226.3
Q ss_pred CCCceEEEEEeccCCcc-ccccchhHHHH-HHhhhcCCccEEEEeeecCCC-----CCccccCCCcccCCcchhHHHHHH
Q 012256 3 RKQQHIAIFTTASLPWL-TGTAVNPLFRA-AYLAKDGETRVTLVIPWLSLI-----DQKLVYPENITFTSPKQHETYVRR 75 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~-~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~~-----~~v~v~~~~~~~~~~~~~~~~~~~ 75 (467)
|| |++|+..+.|.. +||....+..+ ++|++.| |+|.+++|....- .+...... ..+.. .. ++.
T Consensus 588 M~---Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G-h~V~VitP~Y~~i~~~~~~~~~~~~~-~~~~~-~~----~~v 657 (1036)
T PLN02316 588 MH---IVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN-HNVDIILPKYDCLNLSHVKDLHYQRS-YSWGG-TE----IKV 657 (1036)
T ss_pred cE---EEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC-CEEEEEecCCcccchhhcccceEEEE-eccCC-EE----EEE
Confidence 66 999999999965 56454555554 9999999 8999999965421 11100000 00000 00 000
Q ss_pred HHhhhcCCCCCccccccCC---Cccc---------cceeccchhhhhccCC--CCCCCEEEecCCccccchh-hhhhhh-
Q 012256 76 WLEERTGFTSTFDIRFYPG---KFAI---------DKRSILGVGDISEVIP--DEVADIAVLEEPEHLTWFH-HGKRWK- 139 (467)
Q Consensus 76 ~~~~~~~~~~~~~~~~y~~---~~~~---------~~~~~~~~~~l~~~l~--~~~~DvI~~~~~~~~~~~~-~~~~~~- 139 (467)
| .+..+++.+.+... .|.. ..++.+-......++. ..+|||||++.-.. .+.. ......
T Consensus 658 ~----~~~~~GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~t-alva~llk~~~~ 732 (1036)
T PLN02316 658 W----FGKVEGLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSS-APVAWLFKDHYA 732 (1036)
T ss_pred E----EEEECCcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChH-HHHHHHHHHhhh
Confidence 0 00111121111110 1110 0111111111122222 46899999986422 2211 011100
Q ss_pred ---ccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhH-Hhhh--------cccccc-ccc
Q 012256 140 ---TKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQ-EYAN--------SIICNV-HGV 206 (467)
Q Consensus 140 ---~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~-~~~~--------~~i~~i-~gv 206 (467)
....|+|.++|+.. +.. .. +... ..+||.|+++|+... ++.. .++..| |||
T Consensus 733 ~~~~~~~p~V~TiHnl~--~~~--------n~----lk~~--l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGI 796 (1036)
T PLN02316 733 HYGLSKARVVFTIHNLE--FGA--------NH----IGKA--MAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGI 796 (1036)
T ss_pred hhccCCCCEEEEeCCcc--cch--------hH----HHHH--HHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCc
Confidence 01138999999743 211 01 1111 234799999997755 3221 234444 899
Q ss_pred CCCccccchh-------------------hHHHhhcCC-C-CCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEE
Q 012256 207 NPKFLEIGKK-------------------KKEQQQNGT-H-AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL 265 (467)
Q Consensus 207 d~~~~~~~~~-------------------~~~~~~~~~-~-~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 265 (467)
|++.|.|... ....+.... + ++.++++|||||.++||++.|++|+..+.+ .+++|+|
T Consensus 797 D~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVI 874 (1036)
T PLN02316 797 DPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVL 874 (1036)
T ss_pred cccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEE
Confidence 9887655321 011122222 2 357899999999999999999999999865 3789999
Q ss_pred EecCCC---HHHHHHHHHhcCC----eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-
Q 012256 266 YGNGED---FNQIQEAAEKLKI----VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 335 (467)
Q Consensus 266 ~G~g~~---~~~l~~~~~~~~~----~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~- 335 (467)
+|+|++ ...++++++++++ ++.|.+.++... .+|+.||+||+||.+|++|++.+|||+||+|+|++++|+
T Consensus 875 vG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL 954 (1036)
T PLN02316 875 LGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGL 954 (1036)
T ss_pred EeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCc
Confidence 999987 3567778886643 578888776654 799999999999999999999999999999999999977
Q ss_pred ccccccC-------------CCEEeeC--CHHHHHHHHHHHHhcCCC---CccHHH----HHcCCHHHHHHHHHHHHhcc
Q 012256 336 NDFFKQF-------------PNCRTYD--DRNGFVEATLKALAEEPA---LPTEAQ----RHQLSWESATERFLQVAELD 393 (467)
Q Consensus 336 ~e~v~~~-------------~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~~~----~~~~sw~~~~~~~~~~~~~~ 393 (467)
.|.|.++ .||++++ |+++++++|.+++.+... .++... .+.|||+.++++|+++|+.+
T Consensus 955 ~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 955 FDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred HhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 4888773 6899998 999999999999986422 333322 26899999999999999854
No 21
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=4.5e-33 Score=279.32 Aligned_cols=208 Identities=14% Similarity=0.115 Sum_probs=162.0
Q ss_pred hcCEEEEcCHhhHHhh----hcccccc-cccCCCccccchhhHHHhhcC--CCCCCceEEEEec-cccccCHHHHHHHHH
Q 012256 181 YCHKVIRLSAATQEYA----NSIICNV-HGVNPKFLEIGKKKKEQQQNG--THAFAKGAYYIGK-MVWSKGYKELLELLD 252 (467)
Q Consensus 181 ~~d~vi~~S~~~~~~~----~~~i~~i-~gvd~~~~~~~~~~~~~~~~~--~~~~~~~il~vGr-l~~~Kg~~~li~a~~ 252 (467)
.||.+|++|+...+.. .+++.++ ||+|.+.|.+........... ..++.++++|+|| +.+.||++.+++|+.
T Consensus 156 ~ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~ 235 (396)
T cd03818 156 QADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALP 235 (396)
T ss_pred hCCEEECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHH
Confidence 3799999997766433 2355555 799998887654322111111 1245678999998 999999999999999
Q ss_pred HHHhhcCCeEEEEEecCCC--------HH-HHHHHHHhc----C-CeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcH
Q 012256 253 DHQKELAGLEVDLYGNGED--------FN-QIQEAAEKL----K-IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCT 316 (467)
Q Consensus 253 ~l~~~~~~~~l~i~G~g~~--------~~-~l~~~~~~~----~-~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~ 316 (467)
.+.+..|+++++|+|++.. .+ ..++..+++ + .+|.|+|.+++.+ ++|+.||++|+||..|++|+
T Consensus 236 ~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~ 315 (396)
T cd03818 236 RLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSW 315 (396)
T ss_pred HHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccch
Confidence 9988889999999997321 01 122222222 2 2789999998888 99999999999999999999
Q ss_pred HHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHH
Q 012256 317 TTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 387 (467)
Q Consensus 317 ~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~ 387 (467)
+++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .++++++ ++|||+.++++++
T Consensus 316 ~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 316 SLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999999966 59999999999987 999999999999998654 5555444 5699999999886
Q ss_pred H
Q 012256 388 Q 388 (467)
Q Consensus 388 ~ 388 (467)
+
T Consensus 396 ~ 396 (396)
T cd03818 396 A 396 (396)
T ss_pred C
Confidence 3
No 22
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=7.7e-33 Score=282.12 Aligned_cols=211 Identities=16% Similarity=0.133 Sum_probs=165.0
Q ss_pred hcCEEEEcCHhhHHhhh-----------------cccccc-cccCCCccccchhh------------------HHHhhcC
Q 012256 181 YCHKVIRLSAATQEYAN-----------------SIICNV-HGVNPKFLEIGKKK------------------KEQQQNG 224 (467)
Q Consensus 181 ~~d~vi~~S~~~~~~~~-----------------~~i~~i-~gvd~~~~~~~~~~------------------~~~~~~~ 224 (467)
+||.|+++|+...+... .++..| ||||.+.|.|.... ...++..
T Consensus 220 ~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~l 299 (489)
T PRK14098 220 HADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEV 299 (489)
T ss_pred hcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHh
Confidence 38999999987653322 123334 89999888764321 0111111
Q ss_pred C---CCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHH--H
Q 012256 225 T---HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--L 297 (467)
Q Consensus 225 ~---~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~--~ 297 (467)
. .++.++++|+||+.+.||++.+++|+..+.+ ++++|+|+|+|+. .+.+++++++++.++.|.|.+++.+ .
T Consensus 300 gl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 300 GLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHL 377 (489)
T ss_pred CCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHH
Confidence 1 2356799999999999999999999999875 3799999999975 4678888888877899999998776 8
Q ss_pred HHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-cccccc----CCCEEeeC--CHHHHHHHHHHHHh---cCCC
Q 012256 298 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ----FPNCRTYD--DRNGFVEATLKALA---EEPA 367 (467)
Q Consensus 298 ~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~----~~~g~~~~--~~~~l~~~i~~~l~---~~~~ 367 (467)
+|+.||+||+||.+|++|++.+|||+||+|+|++++|+ .|.+.+ +.+|++++ |+++++++|.++++ +++.
T Consensus 378 ~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~ 457 (489)
T PRK14098 378 AIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEER 457 (489)
T ss_pred HHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999999999976 476653 67899987 99999999998764 3222
Q ss_pred --CccHHH-HHcCCHHHHHHHHHHHHhcc
Q 012256 368 --LPTEAQ-RHQLSWESATERFLQVAELD 393 (467)
Q Consensus 368 --~~~~~~-~~~~sw~~~~~~~~~~~~~~ 393 (467)
.+.++. .+.|||+.++++|+++|+..
T Consensus 458 ~~~~~~~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 458 WEELVLEAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 233222 26899999999999999854
No 23
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=1.9e-32 Score=272.58 Aligned_cols=265 Identities=13% Similarity=0.053 Sum_probs=188.3
Q ss_pred cCCCCCCCEEEecCCccccchhhhhhhhcc-CCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCH
Q 012256 112 VIPDEVADIAVLEEPEHLTWFHHGKRWKTK-FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSA 190 (467)
Q Consensus 112 ~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 190 (467)
.+...+|||||++.+....+. .+.+. ..|++..+|+....+. ...++++.+.+.+ +|.+++.|.
T Consensus 80 ~~~~~~~Dvv~~h~~~~~~~~----~~~~~~~~~~i~~~H~~~~~~~---------~~~~~~~~~~~~~--~d~~i~~~~ 144 (372)
T cd03792 80 PLLDLDADVVVIHDPQPLALP----LFKKKRGRPWIWRCHIDLSSPN---------RRVWDFLQPYIED--YDAAVFHLP 144 (372)
T ss_pred ccccCCCCEEEECCCCchhHH----HhhhcCCCeEEEEeeeecCCCc---------HHHHHHHHHHHHh--CCEEeecHH
Confidence 345678999999987643322 12222 2388889997653221 1223333333322 588888883
Q ss_pred h-hHH-hhhcccccc-cccCCCccc--c---chhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeE
Q 012256 191 A-TQE-YANSIICNV-HGVNPKFLE--I---GKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLE 262 (467)
Q Consensus 191 ~-~~~-~~~~~i~~i-~gvd~~~~~--~---~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~ 262 (467)
. ... +....+ .+ ||||+.... . ..........+..+++++++++||+.+.||++.+++++..+.+..++++
T Consensus 145 ~~~~~~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~ 223 (372)
T cd03792 145 EYVPPQVPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQ 223 (372)
T ss_pred HhcCCCCCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCE
Confidence 3 222 222233 33 899964311 1 1111112233334567899999999999999999999999988778999
Q ss_pred EEEEecCCCH----H-HHHHHHHhcCC--eeEEecCC--CCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEe
Q 012256 263 VDLYGNGEDF----N-QIQEAAEKLKI--VVRVYPGR--DHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 331 (467)
Q Consensus 263 l~i~G~g~~~----~-~l~~~~~~~~~--~v~~~g~~--~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t 331 (467)
|+|+|+|+.. . .+++..+..+. ++.|.|.. ++.+ ++|+.||+|++||..|+||++++||||||+|||+|
T Consensus 224 l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s 303 (372)
T cd03792 224 LVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAG 303 (372)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEc
Confidence 9999998642 2 23444433333 67888776 5555 89999999999999999999999999999999999
Q ss_pred CCCC-ccccccCCCEEeeCCHHHHHHHHHHHHhcCCC--CccHHH----HHcCCHHHHHHHHHHHHhc
Q 012256 332 NHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 392 (467)
Q Consensus 332 ~~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 392 (467)
+.++ .+++.++.+|+++++.++++++|.+++++++. .|++++ .++|||+.++++++++|+.
T Consensus 304 ~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 304 PVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred CCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 9966 68899999999999999999999999987654 455543 3689999999999999974
No 24
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=3.1e-32 Score=272.61 Aligned_cols=270 Identities=17% Similarity=0.135 Sum_probs=188.8
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhh-ccchHHHHHHHHHHHHhhhhhcCEEEEcCHhh
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKRE-KNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 192 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 192 (467)
..++|+||++..... +. +....+..+ |++.+.|+..+...... ..... ..+..++.+. ....+|.++++|+..
T Consensus 81 ~~~~divh~~~~~~~-~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~ad~vi~~S~~~ 155 (388)
T TIGR02149 81 PVDADVVHSHTWYTF-LA--GHLAKKLYDKPLVVTAHSLEPLRPWKEEQLGGG-YKLSSWAEKT-AIEAADRVIAVSGGM 155 (388)
T ss_pred CCCCCeEeecchhhh-hH--HHHHHHhcCCCEEEEeecccccccccccccccc-hhHHHHHHHH-HHhhCCEEEEccHHH
Confidence 457999999864332 11 111222223 89999998653211000 00000 0122222322 223379999999776
Q ss_pred HHhhh--------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEE
Q 012256 193 QEYAN--------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEV 263 (467)
Q Consensus 193 ~~~~~--------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l 263 (467)
.+... .++.++ ||+|...+.+........+...+++++.++|+||+.+.||++.++++++.+. +++++
T Consensus 156 ~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l 232 (388)
T TIGR02149 156 REDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQV 232 (388)
T ss_pred HHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcE
Confidence 53221 233334 7999887766433322333333455778999999999999999999999884 46889
Q ss_pred EEEecCCCH----HHHHHHHHhcCC---eeEEe-cCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 264 DLYGNGEDF----NQIQEAAEKLKI---VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 264 ~i~G~g~~~----~~l~~~~~~~~~---~v~~~-g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+++|+|++. +.+++.+++++. ++.++ |.+++.+ ++|+.||++|+||..|++|++++||||||+|||+|+.
T Consensus 233 ~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~ 312 (388)
T TIGR02149 233 VLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASAT 312 (388)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCC
Confidence 999877653 345555555554 36666 5577776 9999999999999999999999999999999999999
Q ss_pred CC-ccccccCCCEEeeC--CH------HHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHHHHHhc
Q 012256 334 PS-NDFFKQFPNCRTYD--DR------NGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAEL 392 (467)
Q Consensus 334 g~-~e~v~~~~~g~~~~--~~------~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~ 392 (467)
|+ .|++.++.+|++++ |+ ++++++|.+++++++. .++.+++ ++|||+.+++++.++|+.
T Consensus 313 ~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 313 GGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred CCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66 58999999999987 66 8999999999988654 4555433 679999999999999984
No 25
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=5.9e-32 Score=269.06 Aligned_cols=253 Identities=17% Similarity=0.207 Sum_probs=191.5
Q ss_pred CCCCCCEEEecCCccccchhhhhhhhccC--CcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHh
Q 012256 114 PDEVADIAVLEEPEHLTWFHHGKRWKTKF--RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA 191 (467)
Q Consensus 114 ~~~~~DvI~~~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 191 (467)
+..++||||+++...+... +..+. .+++..+|..+.... +. .++++|++|+.
T Consensus 96 ~~~~~~vi~v~~~~~~~~~-----~~~~~~~~~~v~~~h~~~~~~~---------------~~------~~~~ii~~S~~ 149 (380)
T PRK15484 96 TITKDSVIVIHNSMKLYRQ-----IRERAPQAKLVMHMHNAFEPEL---------------LD------KNAKIIVPSQF 149 (380)
T ss_pred CCCCCcEEEEeCcHHhHHH-----HHhhCCCCCEEEEEecccChhH---------------hc------cCCEEEEcCHH
Confidence 3467999999885533221 22222 278888886532111 11 14889999987
Q ss_pred hHHhhhc-----ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEE
Q 012256 192 TQEYANS-----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL 265 (467)
Q Consensus 192 ~~~~~~~-----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 265 (467)
.++...+ ++..+ ||+|...|.+.............++.++++|+||+.+.||++.+++|+..+.++.|+++|+|
T Consensus 150 ~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvi 229 (380)
T PRK15484 150 LKKFYEERLPNADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVV 229 (380)
T ss_pred HHHHHHhhCCCCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEE
Confidence 6654432 33444 89998777654332222222333446789999999999999999999999988889999999
Q ss_pred EecCCC---------HHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCC-CCCcHHHHHHHHcCCeEEEeCC
Q 012256 266 YGNGED---------FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 266 ~G~g~~---------~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~-e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+|+|+. .+.+++++++++.++.|.|.+++.+ ++|+.||++|+||.. |+||++++||||||+|||+|+.
T Consensus 230 vG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~ 309 (380)
T PRK15484 230 VGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTK 309 (380)
T ss_pred EeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCC
Confidence 998763 1246666667777899999998777 999999999999975 9999999999999999999999
Q ss_pred CC-ccccccCCCEE-eeC--CHHHHHHHHHHHHhcCCC-CccHHHH----HcCCHHHHHHHHHHHHhc
Q 012256 334 PS-NDFFKQFPNCR-TYD--DRNGFVEATLKALAEEPA-LPTEAQR----HQLSWESATERFLQVAEL 392 (467)
Q Consensus 334 g~-~e~v~~~~~g~-~~~--~~~~l~~~i~~~l~~~~~-~~~~~~~----~~~sw~~~~~~~~~~~~~ 392 (467)
|+ .|++.++.+|+ +++ |+++++++|.++++++.. .++++++ ++|||+.++++++++|+.
T Consensus 310 gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 310 GGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66 58999999998 444 999999999999988654 4554443 789999999999999873
No 26
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=5.4e-32 Score=281.37 Aligned_cols=273 Identities=10% Similarity=0.110 Sum_probs=185.9
Q ss_pred CCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccch--H--HHHHH-HHHHHHhhhhhcCEEEEcC
Q 012256 116 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGR--L--QAFLL-KYANSWLVDIYCHKVIRLS 189 (467)
Q Consensus 116 ~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~--~--~~~~~-~~~~~~~~~~~~d~vi~~S 189 (467)
.+||+||++... .++. +..+.++.. |.+.+.|+............. . +..+. +..........||.||+.|
T Consensus 384 ~~pDlIHahy~d-~glv--a~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT 460 (784)
T TIGR02470 384 GKPDLIIGNYSD-GNLV--ASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITST 460 (784)
T ss_pred CCCCEEEECCCc-hHHH--HHHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECc
Confidence 579999997632 2222 345666666 989999975322111111000 0 00111 1111223444589999999
Q ss_pred Hhh-H-------Hh--------------------hhcccccc-cccCCCccccchhhHHH-------------------h
Q 012256 190 AAT-Q-------EY--------------------ANSIICNV-HGVNPKFLEIGKKKKEQ-------------------Q 221 (467)
Q Consensus 190 ~~~-~-------~~--------------------~~~~i~~i-~gvd~~~~~~~~~~~~~-------------------~ 221 (467)
... . ++ ...++.++ .|+|.+.|.|....... .
T Consensus 461 ~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~ 540 (784)
T TIGR02470 461 YQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDE 540 (784)
T ss_pred HHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHH
Confidence 421 1 11 11223333 59998877663321110 1
Q ss_pred hc--CCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC------------HHHHHHHHHhcCC--e
Q 012256 222 QN--GTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED------------FNQIQEAAEKLKI--V 285 (467)
Q Consensus 222 ~~--~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~------------~~~l~~~~~~~~~--~ 285 (467)
.. ...+++++|+++||+.+.||++.|++|+.++....++++|+|+|++.+ .+.+.++++++++ +
T Consensus 541 ~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~ 620 (784)
T TIGR02470 541 HYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQ 620 (784)
T ss_pred HhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCe
Confidence 11 124567899999999999999999999988765556789999997642 2346667777776 6
Q ss_pred eEEecCC-CCHH--HHHH----hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHH
Q 012256 286 VRVYPGR-DHAD--LIFH----DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFV 355 (467)
Q Consensus 286 v~~~g~~-~~~~--~~~~----~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~ 355 (467)
|+|.|.. +..+ ++|+ .+|+||+||.+|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++
T Consensus 621 V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA 700 (784)
T TIGR02470 621 IRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAA 700 (784)
T ss_pred EEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 8888875 3333 6665 24799999999999999999999999999999977 59999999999998 999999
Q ss_pred HHHHHHHh----cCCC--CccHHHH----HcCCHHHHHHHHHHHHh
Q 012256 356 EATLKALA----EEPA--LPTEAQR----HQLSWESATERFLQVAE 391 (467)
Q Consensus 356 ~~i~~~l~----~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 391 (467)
++|.++++ ++.. .++.+++ ++|||+.++++++++..
T Consensus 701 ~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 701 EKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAG 746 (784)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999874 3322 4555443 68999999999998875
No 27
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=1.6e-31 Score=264.10 Aligned_cols=352 Identities=21% Similarity=0.224 Sum_probs=232.9
Q ss_pred eEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTST 86 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (467)
||+++++.|+|..+|.+......+++|.+.| ++|+++++.-..... ..... ......
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g-~~v~v~~~~~~~~~~-------------~~~~~--------~~~~~~- 57 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRG-HEVYVVAPSYPGAPE-------------EEEVV--------VVRPFR- 57 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcC-CeEEEEeCCCCCCCc-------------ccccc--------cccccc-
Confidence 4999999999999996656565669999999 444444442211100 00000 000000
Q ss_pred ccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchH
Q 012256 87 FDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRL 165 (467)
Q Consensus 87 ~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (467)
.....+.. ..........+...+.+.+||+||++.+....+. +..+.++.+ |++..+|+.+..+.........
T Consensus 58 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 131 (374)
T cd03817 58 VPTFKYPD----FRLPLPIPRALIIILKELGPDIVHTHTPFSLGLL--GLRVARKLGIPVVATYHTMYEDYTHYVPLGRL 131 (374)
T ss_pred cccchhhh----hhccccHHHHHHHHHhhcCCCEEEECCchhhhhH--HHHHHHHcCCCEEEEecCCHHHHHHHHhcccc
Confidence 00000000 0000111122344577889999999887554433 334444455 8999999887765532222111
Q ss_pred -HHHHHH-HHHHHhhhhhcCEEEEcCHhhHHhhhc-----ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEec
Q 012256 166 -QAFLLK-YANSWLVDIYCHKVIRLSAATQEYANS-----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGK 237 (467)
Q Consensus 166 -~~~~~~-~~~~~~~~~~~d~vi~~S~~~~~~~~~-----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (467)
...... .+.+. ....+|.++++|+..++.... .+..+ +|+|...+.+..............+++.++|+|+
T Consensus 132 ~~~~~~~~~~~~~-~~~~~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 210 (374)
T cd03817 132 LARAVVRRKLSRR-FYNRCDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYVGR 210 (374)
T ss_pred hhHHHHHHHHHHH-HhhhCCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCCCCCeEEEEEee
Confidence 111111 12222 112379999999776654432 12223 6898877765443322222223445678999999
Q ss_pred cccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCC
Q 012256 238 MVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 238 l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~ 313 (467)
+.+.||++.+++++..+.++.++++++++|+|+..+.+++.+++.+. ++.++|.+++.+ ++|+.||++++||..|+
T Consensus 211 ~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~ 290 (374)
T cd03817 211 LAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTET 290 (374)
T ss_pred eecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccC
Confidence 99999999999999999887789999999999998888888876665 688889998877 99999999999999999
Q ss_pred CcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHH
Q 012256 314 VCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERF 386 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~ 386 (467)
+|++++|||+||+|||+++.|+ .+++.++.+|++++ +.++++++|.++++++.. .++++++ .+++ ..+++
T Consensus 291 ~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 367 (374)
T cd03817 291 QGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKV 367 (374)
T ss_pred cChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 9999999999999999999976 58999989999988 333999999999998765 4554443 3333 45555
Q ss_pred HHHHh
Q 012256 387 LQVAE 391 (467)
Q Consensus 387 ~~~~~ 391 (467)
.++|+
T Consensus 368 ~~~~~ 372 (374)
T cd03817 368 EKLYE 372 (374)
T ss_pred HHHHh
Confidence 55554
No 28
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.1e-31 Score=277.41 Aligned_cols=279 Identities=13% Similarity=0.004 Sum_probs=198.2
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEE-EEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcC
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVG-IVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH 183 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 183 (467)
...+.+.+++++|||||++......+.. ...+..+ |++. +.|+..+.... ..+ ......+...+....++
T Consensus 389 ~~~L~~~lk~~kpDIVH~h~~~a~~lg~---lAa~~~gvPvIv~t~h~~~~~~~~----~~~-~~~~~~l~~~l~~~~~~ 460 (694)
T PRK15179 389 TTKLTDVMRSSVPSVVHIWQDGSIFACA---LAALLAGVPRIVLSVRTMPPVDRP----DRY-RVEYDIIYSELLKMRGV 460 (694)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHHHHHH---HHHHHcCCCEEEEEeCCCccccch----hHH-HHHHHHHHHHHHhcCCe
Confidence 3567788889999999997654432221 1222223 6544 55764322111 001 11122222222333345
Q ss_pred EEEEcCHhhHH-hh------hcccccc-cccCCCccccchhhHH-Hh--hcCCCCCCceEEEEeccccccCHHHHHHHHH
Q 012256 184 KVIRLSAATQE-YA------NSIICNV-HGVNPKFLEIGKKKKE-QQ--QNGTHAFAKGAYYIGKMVWSKGYKELLELLD 252 (467)
Q Consensus 184 ~vi~~S~~~~~-~~------~~~i~~i-~gvd~~~~~~~~~~~~-~~--~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~ 252 (467)
.+++.|....+ +. .+++.++ ||||...|.+...... .. ......+.++|+++||+.+.||++.+++|+.
T Consensus 461 i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a 540 (694)
T PRK15179 461 ALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQ 540 (694)
T ss_pred EEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHH
Confidence 66666754432 21 2345555 8999877754322111 11 1111334568999999999999999999999
Q ss_pred HHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEE
Q 012256 253 DHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 330 (467)
Q Consensus 253 ~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~ 330 (467)
.+.++.|+++|+|+|+|+..+.++++++++++ +|.|.|..++...+|+.+|+||+||.+|+||++++||||||+|||+
T Consensus 541 ~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa 620 (694)
T PRK15179 541 RFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT 620 (694)
T ss_pred HHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE
Confidence 99888899999999999999999999998886 6888899876669999999999999999999999999999999999
Q ss_pred eCCCC-ccccccCCCEEeeC--C--HHHHHHHHHHHHhcCCC--CccHHH----HHcCCHHHHHHHHHHHHhc
Q 012256 331 ANHPS-NDFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 392 (467)
Q Consensus 331 t~~g~-~e~v~~~~~g~~~~--~--~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 392 (467)
|+.|+ .|++.++.+|++++ | +++++++|.+++.+... .+++++ .++|||+.++++++++|++
T Consensus 621 t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~~ 693 (694)
T PRK15179 621 TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQM 693 (694)
T ss_pred ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 99966 59999999999987 4 56899999888876433 343333 3689999999999999985
No 29
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=2.7e-31 Score=262.38 Aligned_cols=271 Identities=17% Similarity=0.148 Sum_probs=190.3
Q ss_pred CCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhh
Q 012256 114 PDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 192 (467)
Q Consensus 114 ~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 192 (467)
...+||+||++......... ...+.++.+ |++...|+....+.. ....+...+............++.+++.|...
T Consensus 84 ~~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~ 160 (375)
T cd03821 84 NIREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWAL--PHKALKKRLAWFLFERRLLQAAAAVHATSEQE 160 (375)
T ss_pred hCCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEcccccccccc--ccchhhhHHHHHHHHHHHHhcCCEEEECCHHH
Confidence 35689999998754433332 223333334 888888986554431 11112222222121111223378888888553
Q ss_pred HHhh-----hcccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEE
Q 012256 193 QEYA-----NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLY 266 (467)
Q Consensus 193 ~~~~-----~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~ 266 (467)
.... ..++..+ +|+|.+.+.+..............+++.++|+|++.+.||++.+++++..+.++.++++++++
T Consensus 161 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~ 240 (375)
T cd03821 161 AAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIA 240 (375)
T ss_pred HHHHHhhCCcccEEEcCCCcChhccCcchhhhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEE
Confidence 3222 2233334 799987776543322222223345577999999999999999999999999988899999999
Q ss_pred ecCCC--HHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-cccc
Q 012256 267 GNGED--FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFF 339 (467)
Q Consensus 267 G~g~~--~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v 339 (467)
|+++. ...++..+++.++ ++.++|.+++.+ ++|+.||++|+||..|++|++++||||||+|||+++.++ .+++
T Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~ 320 (375)
T cd03821 241 GPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELI 320 (375)
T ss_pred CCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHh
Confidence 98654 3345544455554 688899998777 999999999999999999999999999999999999966 5788
Q ss_pred ccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHH----HHcCCHHHHHHHHHH
Q 012256 340 KQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQ 388 (467)
Q Consensus 340 ~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~ 388 (467)
.+ ..|++++ ++++++++|.++++++.. .+++++ .++|||+.+++++++
T Consensus 321 ~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 375 (375)
T cd03821 321 EY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLLE 375 (375)
T ss_pred hc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhhC
Confidence 77 7888888 779999999999998644 344432 488999999998863
No 30
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.2e-31 Score=275.58 Aligned_cols=209 Identities=19% Similarity=0.264 Sum_probs=162.9
Q ss_pred hcCEEEEcCHhhHHhhh----------------cccccc-cccCCCccccchhhH------------------HHhhcCC
Q 012256 181 YCHKVIRLSAATQEYAN----------------SIICNV-HGVNPKFLEIGKKKK------------------EQQQNGT 225 (467)
Q Consensus 181 ~~d~vi~~S~~~~~~~~----------------~~i~~i-~gvd~~~~~~~~~~~------------------~~~~~~~ 225 (467)
+||.++++|+...+... .++..+ ||+|.+.+.+..... ..++...
T Consensus 210 ~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g 289 (476)
T cd03791 210 YADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELG 289 (476)
T ss_pred hcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcC
Confidence 37999999976543221 234444 899988887643211 1122221
Q ss_pred ---CCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHH--HH
Q 012256 226 ---HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LI 298 (467)
Q Consensus 226 ---~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~--~~ 298 (467)
.++.++++|+||+.++||++.+++++..+.+. +++|+|+|+|+. .+.++++++++..++.+++++++.. .+
T Consensus 290 ~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 290 LPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLI 367 (476)
T ss_pred CCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence 35678999999999999999999999998764 489999999865 3557777766655788887776554 79
Q ss_pred HHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCC------CEEeeC--CHHHHHHHHHHHHhcCCC--
Q 012256 299 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFP------NCRTYD--DRNGFVEATLKALAEEPA-- 367 (467)
Q Consensus 299 ~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~------~g~~~~--~~~~l~~~i~~~l~~~~~-- 367 (467)
|+.||++++||.+|++|++++|||+||+|||+++.|+ .|++.++. +|++++ |+++++++|.++++....
T Consensus 368 ~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~ 447 (476)
T cd03791 368 YAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPE 447 (476)
T ss_pred HHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999999999999999999999976 58998887 899987 899999999998874322
Q ss_pred ---CccHHHH-HcCCHHHHHHHHHHHHh
Q 012256 368 ---LPTEAQR-HQLSWESATERFLQVAE 391 (467)
Q Consensus 368 ---~~~~~~~-~~~sw~~~~~~~~~~~~ 391 (467)
.++++.. ..|||+.++++++++|+
T Consensus 448 ~~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 448 AWRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 3333333 67999999999999996
No 31
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.7e-31 Score=264.29 Aligned_cols=262 Identities=13% Similarity=0.150 Sum_probs=180.0
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHH
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 194 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 194 (467)
..++|+||...+....+. ....+...|++...|+...... ..+.....+.+..+++ ....+|.++++|+..++
T Consensus 84 ~~~~~~i~~~~~~~~~~~---~~~~~~~~~~v~~~h~~~~~~~---~~~~~~~~~~~~~~~~-~~~~ad~ii~~s~~~~~ 156 (363)
T cd04955 84 KRDIDHVHALGPAIAPFL---PLLRLKGKKVVVNMDGLEWKRA---KWGRPAKRYLKFGEKL-AVKFADRLIADSPGIKE 156 (363)
T ss_pred cCCeEEEEecCccHHHHH---HHHHhcCCCEEEEccCcceeec---ccccchhHHHHHHHHH-HHhhccEEEeCCHHHHH
Confidence 456777776655542222 1122222388888887542211 1111222333333333 22347999999987665
Q ss_pred hhhcc----cccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecC
Q 012256 195 YANSI----ICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG 269 (467)
Q Consensus 195 ~~~~~----i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g 269 (467)
..... ...+ ||+|...+.+.. . ............++|+||+.+.||++.+++++.++.. +++|+|+|+|
T Consensus 157 ~~~~~~~~~~~~i~ngv~~~~~~~~~--~-~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~ 230 (363)
T cd04955 157 YLKEKYGRDSTYIPYGADHVVSSEED--E-ILKKYGLEPGRYYLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNA 230 (363)
T ss_pred HHHHhcCCCCeeeCCCcChhhcchhh--h-hHHhcCCCCCcEEEEEecccccCCHHHHHHHHHhhcc---CceEEEEcCC
Confidence 44221 1223 799876655411 1 1111122224568999999999999999999998753 7999999998
Q ss_pred CCHHHHHHHHH-hcC--CeeEEecCCCCHH--HHHHhcCeEEecCCC-CCCcHHHHHHHHcCCeEEEeCCCC-ccccccC
Q 012256 270 EDFNQIQEAAE-KLK--IVVRVYPGRDHAD--LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPS-NDFFKQF 342 (467)
Q Consensus 270 ~~~~~l~~~~~-~~~--~~v~~~g~~~~~~--~~~~~adv~v~ps~~-e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~ 342 (467)
+....+.+..+ ..+ .+|+++|.+++.+ ++|+.||++++||.. |++|++++||||||+|||+|+.|+ .|++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~- 309 (363)
T cd04955 231 DHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD- 309 (363)
T ss_pred CCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccceeecC-
Confidence 76555554444 333 3789999998887 999999999999998 999999999999999999999976 477765
Q ss_pred CCEEeeCCHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHHHHHh
Q 012256 343 PNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAE 391 (467)
Q Consensus 343 ~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 391 (467)
+|+++++.+.++++|.+++++++. .++++++ ++|||+.++++++++|+
T Consensus 310 -~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 310 -KAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred -CeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 688877444499999999998654 4444433 56999999999999985
No 32
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=4e-31 Score=265.87 Aligned_cols=257 Identities=15% Similarity=0.049 Sum_probs=183.8
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchH----HHHHh--hc------------c---chHHHHHHHHH
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYL----EYVKR--EK------------N---GRLQAFLLKYA 173 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~----~~~~~--~~------------~---~~~~~~~~~~~ 173 (467)
+.+||||+.+.....+++. +..+. ..|++..+| +| +.+.. .+ . ...+..+++.+
T Consensus 105 ~~~pDv~i~~~g~~~~~~~-~~~~~--~~~~i~y~h--~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~ 179 (419)
T cd03806 105 KLVPDIFIDTMGYPFTYPL-VRLLG--GCPVGAYVH--YPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLF 179 (419)
T ss_pred hcCCCEEEEcCCcccHHHH-HHHhc--CCeEEEEec--CCcchHHHHHHHhhccccccCccchhccchHHHHHHHHHHHH
Confidence 4589999887655555541 22223 128999999 44 33311 01 0 12233333333
Q ss_pred HHHhhhh--hcCEEEEcCHhhHHhhhc------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCH
Q 012256 174 NSWLVDI--YCHKVIRLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGY 244 (467)
Q Consensus 174 ~~~~~~~--~~d~vi~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~ 244 (467)
..+.... .||.++++|+.+.+...+ ++.++ +|+|.+.+.+.... .....+.++|+||+.+.||+
T Consensus 180 ~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~-------~~~~~~~il~vgr~~~~K~~ 252 (419)
T cd03806 180 AFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLD-------EKTRENQILSIAQFRPEKNH 252 (419)
T ss_pred HHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhcccccc-------cccCCcEEEEEEeecCCCCH
Confidence 3332222 399999999876643322 33344 58886655433210 12235689999999999999
Q ss_pred HHHHHHHHHHHhhcC-----CeEEEEEecCCC------HHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecC
Q 012256 245 KELLELLDDHQKELA-----GLEVDLYGNGED------FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPS 309 (467)
Q Consensus 245 ~~li~a~~~l~~~~~-----~~~l~i~G~g~~------~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps 309 (467)
+.+++|+..+.+..| +++++|+|++.. .++++++++++++ +|+|+|.+++.+ ++|+.||++|+||
T Consensus 253 ~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s 332 (419)
T cd03806 253 PLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTM 332 (419)
T ss_pred HHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECC
Confidence 999999999987665 499999998742 3567788888776 689999998888 9999999999999
Q ss_pred CCCCCcHHHHHHHHcCCeEEEeCCCC-c-cccc---cCCCEEeeCCHHHHHHHHHHHHhcCCC---CccHH---HHHcCC
Q 012256 310 TTDVVCTTTAEALAMGKIVVCANHPS-N-DFFK---QFPNCRTYDDRNGFVEATLKALAEEPA---LPTEA---QRHQLS 378 (467)
Q Consensus 310 ~~e~~~~~~lEAma~G~PVV~t~~g~-~-e~v~---~~~~g~~~~~~~~l~~~i~~~l~~~~~---~~~~~---~~~~~s 378 (467)
..|+||++++||||||+|||+++.|+ . +++. ++.+|++++|+++++++|.+++++++. .+.++ ..++||
T Consensus 333 ~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs 412 (419)
T cd03806 333 WNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFS 412 (419)
T ss_pred ccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999844 3 7777 789999999999999999999997654 22222 227799
Q ss_pred HHHHH
Q 012256 379 WESAT 383 (467)
Q Consensus 379 w~~~~ 383 (467)
|+...
T Consensus 413 ~~~f~ 417 (419)
T cd03806 413 DEEFE 417 (419)
T ss_pred HHHhc
Confidence 98764
No 33
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=8.7e-32 Score=267.11 Aligned_cols=266 Identities=15% Similarity=0.110 Sum_probs=195.2
Q ss_pred hhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEE
Q 012256 109 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 187 (467)
Q Consensus 109 l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 187 (467)
+...+++.+||+||++........ ....++.+ |++.++|+.+............ ....+...+.+ ...+|.+++
T Consensus 74 ~~~~~~~~~~dvvh~~~~~~~~~~---~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~d~ii~ 148 (367)
T cd05844 74 LRRLLRRHRPDLVHAHFGFDGVYA---LPLARRLGVPLVVTFHGFDATTSLALLLRSR-WALYARRRRRL-ARRAALFIA 148 (367)
T ss_pred HHHHHHhhCCCEEEeccCchHHHH---HHHHHHcCCCEEEEEeCccccccchhhcccc-hhHHHHHHHHH-HHhcCEEEE
Confidence 344567889999999754432222 12333344 8999999754332211111000 11112222211 123699999
Q ss_pred cCHhhHHhhhc------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCC
Q 012256 188 LSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 260 (467)
Q Consensus 188 ~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~ 260 (467)
+|+..++...+ ++..+ +|+|.+.+.+... ....+.++|+|++.+.||++.+++|+..+.++.++
T Consensus 149 ~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~~---------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~ 219 (367)
T cd05844 149 VSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATP---------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPE 219 (367)
T ss_pred CCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCCC---------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCC
Confidence 99876644322 23333 7888776654321 12356899999999999999999999999888899
Q ss_pred eEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCC------CCCCcHHHHHHHHcCCeEEE
Q 012256 261 LEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPST------TDVVCTTTAEALAMGKIVVC 330 (467)
Q Consensus 261 ~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~------~e~~~~~~lEAma~G~PVV~ 330 (467)
++|+|+|+|+..+.+++.++++++ +++|+|.+++.+ ++|+.||++|+||. .|++|++++||||||+|||+
T Consensus 220 ~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~ 299 (367)
T cd05844 220 VRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVA 299 (367)
T ss_pred eEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEE
Confidence 999999999888889988888654 788889998877 99999999999997 59999999999999999999
Q ss_pred eCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHH----HHcCCHHHHHHHHHH
Q 012256 331 ANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQ 388 (467)
Q Consensus 331 t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~ 388 (467)
|+.++ .|++.++.+|++++ |+++++++|.+++++++. .++.++ .++|||+..++++.+
T Consensus 300 s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 300 TRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred eCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 99966 58898989999986 999999999999987654 454433 268999999999875
No 34
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.3e-31 Score=262.60 Aligned_cols=332 Identities=17% Similarity=0.125 Sum_probs=217.2
Q ss_pred eEEEEEeccCCccccccchhHHH-HHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFR-AAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTS 85 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~-~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (467)
||++++++|+|..||.. ..+.. +++|.++| |+|.++.... ........ . ..
T Consensus 1 kil~i~~~~~p~~gG~~-~~~~~l~~~L~~~g--------------~~v~v~~~~~---~~~~~~~~----~----~~-- 52 (357)
T cd03795 1 RVLHVGKFYPPDRGGIE-QVIRDLAEGLAARG--------------IEVAVLCASP---EPKGRDEE----R----NG-- 52 (357)
T ss_pred CeeEecCCCCCCCCcHH-HHHHHHHHHHHhCC--------------CceEEEecCC---CCcchhhh----c----cC--
Confidence 49999999999977744 55444 49999999 7776644321 00111000 0 00
Q ss_pred CccccccCCCccc-cceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccch
Q 012256 86 TFDIRFYPGKFAI-DKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGR 164 (467)
Q Consensus 86 ~~~~~~y~~~~~~-~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~ 164 (467)
..+...+..... ......... ....+...+||+||++.+...... ...+..+..+.+..+|+...... .
T Consensus 53 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dii~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~------~ 122 (357)
T cd03795 53 -HRVIRAPSLLNVASTPFSPSFF-KQLKKLAKKADVIHLHFPNPLADL--ALLLLPRKKPVVVHWHSDIVKQK------L 122 (357)
T ss_pred -ceEEEeecccccccccccHHHH-HHHHhcCCCCCEEEEecCcchHHH--HHHHhccCceEEEEEcChhhccc------h
Confidence 011111000000 000000111 111145779999999876654443 12222223478888886432211 0
Q ss_pred HHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhh------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEec
Q 012256 165 LQAFLLKYANSWLVDIYCHKVIRLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGK 237 (467)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (467)
. ....+.+.+. ....||.++++|+...+... .++..+ +|+|...+.+...... .......+.+.++|+|+
T Consensus 123 ~-~~~~~~~~~~-~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~ 199 (357)
T cd03795 123 L-LKLYRPLQRR-FLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEE-AIWRRAAGRPFFLFVGR 199 (357)
T ss_pred h-hhhhhHHHHH-HHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhh-HhhcCCCCCcEEEEecc
Confidence 1 1122222222 11237999999977554221 222233 7999877765433211 11223345678999999
Q ss_pred cccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCC--C
Q 012256 238 MVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPST--T 311 (467)
Q Consensus 238 l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~--~ 311 (467)
+.+.||++.+++++.++. +++++|+|+|+....+++.+++.+. +|.|+|.+++.+ ++|+.||++++||. .
T Consensus 200 ~~~~K~~~~li~a~~~l~----~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~ 275 (357)
T cd03795 200 LVYYKGLDVLLEAAAALP----DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERS 275 (357)
T ss_pred cccccCHHHHHHHHHhcc----CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccc
Confidence 999999999999999875 7999999999998888888866655 788999999877 99999999999986 5
Q ss_pred CCCcHHHHHHHHcCCeEEEeCCCC-cccccc-CCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHH
Q 012256 312 DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ-FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWES 381 (467)
Q Consensus 312 e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~-~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~ 381 (467)
|++|++++|||+||+|||+|+.++ .+.+.+ +.+|++++ |+++++++|.++++++.. .++.+++ ++|||+.
T Consensus 276 e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 355 (357)
T cd03795 276 EAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADR 355 (357)
T ss_pred cccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHh
Confidence 999999999999999999999966 577775 88999886 899999999999998765 4554433 7899987
Q ss_pred HH
Q 012256 382 AT 383 (467)
Q Consensus 382 ~~ 383 (467)
++
T Consensus 356 ~~ 357 (357)
T cd03795 356 MV 357 (357)
T ss_pred hC
Confidence 63
No 35
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=2.7e-31 Score=262.81 Aligned_cols=258 Identities=15% Similarity=0.125 Sum_probs=186.8
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC---cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcC
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR---YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH 183 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~---~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 183 (467)
..+.+.+++.+||+||++.+....+.. ...+..+ +++...|....... . .. ... ...||
T Consensus 74 ~~l~~~l~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~~~~~----~-----~~---~~~---~~~~d 135 (359)
T PRK09922 74 YNFSKWLKETQPDIVICIDVISCLYAN---KARKKSGKQFKIFSWPHFSLDHKK----H-----AE---CKK---ITCAD 135 (359)
T ss_pred HHHHHHHHhcCCCEEEEcCHHHHHHHH---HHHHHhCCCCeEEEEecCcccccc----h-----hh---hhh---hhcCC
Confidence 456688889999999998754432221 1222112 44555564321111 0 00 001 13479
Q ss_pred EEEEcCHhhHHhhh-c-----ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEecccc--ccCHHHHHHHHHHH
Q 012256 184 KVIRLSAATQEYAN-S-----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW--SKGYKELLELLDDH 254 (467)
Q Consensus 184 ~vi~~S~~~~~~~~-~-----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~--~Kg~~~li~a~~~l 254 (467)
.++++|+..++... . ++..+ ||+|.+.+..... ...+++.++|+||+.+ .||++.+++++..+
T Consensus 136 ~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~--------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~ 207 (359)
T PRK09922 136 YHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPP--------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQT 207 (359)
T ss_pred EEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCc--------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhh
Confidence 99999987664432 2 23334 7888543321111 1123568999999864 59999999999887
Q ss_pred HhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH----HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeE
Q 012256 255 QKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD----LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 328 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~----~~~~~adv~v~ps~~e~~~~~~lEAma~G~PV 328 (467)
. ++++|+|+|+|++.+.+++.++++++ ++.|+|.+++.. ++|..+|++|+||..|+||++++||||||+||
T Consensus 208 ~---~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pv 284 (359)
T PRK09922 208 T---GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPC 284 (359)
T ss_pred C---CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCE
Confidence 3 47999999999999999999988775 788999986542 77888999999999999999999999999999
Q ss_pred EEeC-CCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCCc---cHHHHHcCCHHHHHHHHHHHHhcc
Q 012256 329 VCAN-HPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALP---TEAQRHQLSWESATERFLQVAELD 393 (467)
Q Consensus 329 V~t~-~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~~---~~~~~~~~sw~~~~~~~~~~~~~~ 393 (467)
|+|+ .|+ .|++.++.+|++++ |+++++++|.++++++.... ..+...+|+-+..++++.+.|+..
T Consensus 285 v~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T PRK09922 285 ISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYEVLYFKNLNNALFSK 356 (359)
T ss_pred EEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999 665 58999999999987 99999999999999986421 123447899999999999998743
No 36
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.5e-30 Score=261.96 Aligned_cols=273 Identities=12% Similarity=0.094 Sum_probs=190.3
Q ss_pred CCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhh-ccchHHHHHHHHHHHHhhhhhcCEEEEcCH
Q 012256 113 IPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKRE-KNGRLQAFLLKYANSWLVDIYCHKVIRLSA 190 (467)
Q Consensus 113 l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 190 (467)
+...+||+||+++++.+.....+..+.+..+ |++.++|+.+....... ........+..++++++ ...||++|++|+
T Consensus 91 ~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~ad~ii~vS~ 169 (415)
T cd03816 91 YKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLF-GRLADYNLCVTK 169 (415)
T ss_pred HhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHH-hhcCCEeeecCH
Confidence 4567899999987665433211223333334 88889998654332111 11111123444445542 233899999998
Q ss_pred hhHHhhh------cccccc-cccCCCccccchhhHHHhh------------------cCCCCCCceEEEEeccccccCHH
Q 012256 191 ATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQ------------------NGTHAFAKGAYYIGKMVWSKGYK 245 (467)
Q Consensus 191 ~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~------------------~~~~~~~~~il~vGrl~~~Kg~~ 245 (467)
.+.+... +++.++ || +...|.+......... ....+...+++++||+.+.||++
T Consensus 170 ~~~~~l~~~~~~~~ki~vI~Ng-~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~ 248 (415)
T cd03816 170 AMKEDLQQFNNWKIRATVLYDR-PPEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFG 248 (415)
T ss_pred HHHHHHHhhhccCCCeeecCCC-CHHHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHH
Confidence 7664432 344445 56 3444544322111110 01123345788899999999999
Q ss_pred HHHHHHHHHHhh------cCCeEEEEEecCCCHHHHHHHHHhcCC-eeEEe-cCCCCHH--HHHHhcCeEEecC---CCC
Q 012256 246 ELLELLDDHQKE------LAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVY-PGRDHAD--LIFHDYKVFLNPS---TTD 312 (467)
Q Consensus 246 ~li~a~~~l~~~------~~~~~l~i~G~g~~~~~l~~~~~~~~~-~v~~~-g~~~~~~--~~~~~adv~v~ps---~~e 312 (467)
.+++|+..+++. .|+++|+|+|+|+..+++++.++++++ ++.++ |.++..+ ++|+.||++|.|+ ..|
T Consensus 249 ~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~ 328 (415)
T cd03816 249 ILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGL 328 (415)
T ss_pred HHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEcccccccc
Confidence 999999998752 478999999999999999999999887 56666 5677777 9999999999753 247
Q ss_pred CCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeCCHHHHHHHHHHHHhc---CCC--CccHHHH--HcCCHHHHHH
Q 012256 313 VVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAE---EPA--LPTEAQR--HQLSWESATE 384 (467)
Q Consensus 313 ~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l~~---~~~--~~~~~~~--~~~sw~~~~~ 384 (467)
++|++++||||||+|||+|+.|+ .|++.++.+|++++|+++++++|.+++++ ++. .|+.+++ ..++|+..-+
T Consensus 329 ~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 408 (415)
T cd03816 329 DLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFGDSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESELRWDENWD 408 (415)
T ss_pred CCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEECCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhcCHHHHHH
Confidence 89999999999999999999966 59999999999999999999999999998 333 5666554 5678887766
Q ss_pred HHH
Q 012256 385 RFL 387 (467)
Q Consensus 385 ~~~ 387 (467)
+..
T Consensus 409 ~~~ 411 (415)
T cd03816 409 RVV 411 (415)
T ss_pred HHh
Confidence 654
No 37
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=4.9e-31 Score=261.89 Aligned_cols=271 Identities=17% Similarity=0.162 Sum_probs=195.0
Q ss_pred CCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhcc---chHHHHHHHHHHHHhhhhhcCEEEEcC
Q 012256 114 PDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKN---GRLQAFLLKYANSWLVDIYCHKVIRLS 189 (467)
Q Consensus 114 ~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~vi~~S 189 (467)
+..+||+||++.+....... +....+..+ |++..+|+.++........ ........+.+.+. ....+|.++++|
T Consensus 96 ~~~~~D~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi~~s 173 (394)
T cd03794 96 RRRRPDVIIATSPPLLIALA-ALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERL-IYRRADAIVVIS 173 (394)
T ss_pred cccCCCEEEEcCChHHHHHH-HHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHH-HHhcCCEEEEEC
Confidence 47889999998854443331 223333323 8999999876654432211 11111222223222 122379999999
Q ss_pred HhhHHhhh------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeE
Q 012256 190 AATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLE 262 (467)
Q Consensus 190 ~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~ 262 (467)
+...+... .++..+ +|++...+.+..............++..++|+|++.+.||++.+++++..+.+. ++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~ 252 (394)
T cd03794 174 PGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIR 252 (394)
T ss_pred HHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhhhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeE
Confidence 77665442 223333 688876665543222122222344577899999999999999999999999876 8999
Q ss_pred EEEEecCCCHHHHHHHHHhcCC-eeEEecCCCCHH--HHHHhcCeEEecCCCCCC-----cHHHHHHHHcCCeEEEeCCC
Q 012256 263 VDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVV-----CTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 263 l~i~G~g~~~~~l~~~~~~~~~-~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~-----~~~~lEAma~G~PVV~t~~g 334 (467)
++|+|+|++.+.+++.+...+. ++.++|.+++.+ ++|+.||++++||..|++ |++++|||+||+|||+++.+
T Consensus 253 l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~ 332 (394)
T cd03794 253 FLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDG 332 (394)
T ss_pred EEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCC
Confidence 9999999998888886655554 789999888777 999999999999998865 88899999999999999996
Q ss_pred C-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHH
Q 012256 335 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 387 (467)
Q Consensus 335 ~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~ 387 (467)
+ .+.+.++.+|++++ |+++++++|.++++++.. .++++++ ++|||+.++++++
T Consensus 333 ~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 333 ESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred CchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhcC
Confidence 6 58888878898887 999999999999977665 4444333 5899999998863
No 38
>PLN00142 sucrose synthase
Probab=99.98 E-value=5.9e-31 Score=273.60 Aligned_cols=273 Identities=11% Similarity=0.106 Sum_probs=183.1
Q ss_pred CCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhcc-----chHHHHHHHHHHHHhhhhhcCEEEEcC
Q 012256 116 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKN-----GRLQAFLLKYANSWLVDIYCHKVIRLS 189 (467)
Q Consensus 116 ~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~vi~~S 189 (467)
.+||+||.+... .++. +..+.+++. |.+.+.|+........... ........+..........||.||+.|
T Consensus 407 ~~PDlIHaHYwd-sg~v--A~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIasT 483 (815)
T PLN00142 407 GKPDLIIGNYSD-GNLV--ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIITST 483 (815)
T ss_pred CCCCEEEECCcc-HHHH--HHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHhCc
Confidence 469999998432 2222 445566666 9999999653221111111 000011111212222444579899888
Q ss_pred Hh-hH-------Hhh--------------------hcccccc-cccCCCccccchhhHHH-------------------h
Q 012256 190 AA-TQ-------EYA--------------------NSIICNV-HGVNPKFLEIGKKKKEQ-------------------Q 221 (467)
Q Consensus 190 ~~-~~-------~~~--------------------~~~i~~i-~gvd~~~~~~~~~~~~~-------------------~ 221 (467)
.. .. ++. ..++.++ .|+|...|.|....... .
T Consensus 484 ~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e 563 (815)
T PLN00142 484 YQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDE 563 (815)
T ss_pred HHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHH
Confidence 33 21 111 1122333 48888766542211100 0
Q ss_pred hcC--CCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCC------CH------HHHHHHHHhcCC--e
Q 012256 222 QNG--THAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE------DF------NQIQEAAEKLKI--V 285 (467)
Q Consensus 222 ~~~--~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~------~~------~~l~~~~~~~~~--~ 285 (467)
... ..+++++|+++||+.+.||++.|++|+.++.+..++++|+|+|++. +. ..+.++++++++ +
T Consensus 564 ~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~ 643 (815)
T PLN00142 564 HIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQ 643 (815)
T ss_pred HhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCc
Confidence 111 2445779999999999999999999999987767789999999872 11 236667777776 5
Q ss_pred eEEecCCCC----HH--HHHH-hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHH
Q 012256 286 VRVYPGRDH----AD--LIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFV 355 (467)
Q Consensus 286 v~~~g~~~~----~~--~~~~-~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~ 355 (467)
|.|.|.... .+ .+++ .+|+||+||.+|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++
T Consensus 644 V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 644 FRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred EEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 777776432 22 3344 46999999999999999999999999999999976 59999999999998 999999
Q ss_pred HHHHHHH----hcCCC--CccHHHH----HcCCHHHHHHHHHHHHh
Q 012256 356 EATLKAL----AEEPA--LPTEAQR----HQLSWESATERFLQVAE 391 (467)
Q Consensus 356 ~~i~~~l----~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 391 (467)
++|.+++ +++.. .++++++ ++|||+.++++++++..
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~ 769 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGG 769 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9998765 34333 5555443 68999999999998775
No 39
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.98 E-value=1.7e-30 Score=256.82 Aligned_cols=271 Identities=18% Similarity=0.082 Sum_probs=191.0
Q ss_pred hhhccCCCCCCCEEEecCCcccc--ch-hhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcC
Q 012256 108 DISEVIPDEVADIAVLEEPEHLT--WF-HHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH 183 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~--~~-~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 183 (467)
.+.+.++..+||+||++....+. .. .......+..+ |++..+|+..+... .. ......... ...+|
T Consensus 67 ~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----~~---~~~~~~~~~--~~~~d 136 (366)
T cd03822 67 RAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP-----RP---GDRALLRLL--LRRAD 136 (366)
T ss_pred HHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc-----ch---hhhHHHHHH--HhcCC
Confidence 35566778899999997632211 11 00111111234 99999998621111 00 111111111 12369
Q ss_pred EEEEcC-HhhHHhhhc----ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 184 KVIRLS-AATQEYANS----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 184 ~vi~~S-~~~~~~~~~----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
.++++| ...+++... ++..+ ||++...+.+.... .......+++.++|+|++.+.||++.+++++..+.++
T Consensus 137 ~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~ 213 (366)
T cd03822 137 AVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESL---KALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAK 213 (366)
T ss_pred EEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCcccCCchhh---HhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhh
Confidence 999996 444444332 33333 78887666543222 1222334567899999999999999999999999988
Q ss_pred cCCeEEEEEecCCCHHHHHH-----HHHhcCC--eeEEecC-CCCHH--HHHHhcCeEEecCCCC--CCcHHHHHHHHcC
Q 012256 258 LAGLEVDLYGNGEDFNQIQE-----AAEKLKI--VVRVYPG-RDHAD--LIFHDYKVFLNPSTTD--VVCTTTAEALAMG 325 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~-----~~~~~~~--~v~~~g~-~~~~~--~~~~~adv~v~ps~~e--~~~~~~lEAma~G 325 (467)
.++++|+|+|++........ +++++++ ++.++|+ ++..+ ++|+.||++++||..| ++|++++||||||
T Consensus 214 ~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G 293 (366)
T cd03822 214 HPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFG 293 (366)
T ss_pred CCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcC
Confidence 89999999998765333221 2455554 7888887 77776 9999999999999999 9999999999999
Q ss_pred CeEEEeCCCCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHh
Q 012256 326 KIVVCANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 391 (467)
Q Consensus 326 ~PVV~t~~g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 391 (467)
+|||+++.|+.+.+.++.+|++++ |+++++++|..+++++.. .++++++ +.|||+.+++++.++|+
T Consensus 294 ~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 294 KPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred CCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 999999997787777888899887 899999999999997554 4555433 55999999999999874
No 40
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.98 E-value=2.2e-30 Score=254.60 Aligned_cols=352 Identities=19% Similarity=0.143 Sum_probs=236.0
Q ss_pred eEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTST 86 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (467)
||+++++.++|..+|+.......+++|.+.| ++|+++.+............. . . .
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g-~~v~i~~~~~~~~~~~~~~~~-----------~-----------~-~- 55 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARG-HEVTVLTPGDGGLPDEEEVGG-----------I-----------V-V- 55 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcC-ceEEEEecCCCCCCceeeecC-----------c-----------c-e-
Confidence 4999999998885664544444459999999 444444443222110000000 0 0 0
Q ss_pred ccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchH
Q 012256 87 FDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRL 165 (467)
Q Consensus 87 ~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~ 165 (467)
...... ...............+.+.+.+.+||+||++.+....... .+.+..+ |++..+|+..+...... ...
T Consensus 56 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~~~~--~~~ 129 (374)
T cd03801 56 VRPPPL-LRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAA---LAARLLGIPLVLTVHGLEFGRPGNE--LGL 129 (374)
T ss_pred ecCCcc-cccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHH---HHHHhcCCcEEEEeccchhhccccc--hhH
Confidence 000000 0000001111122345666778899999998876665542 2222333 89999998766543211 111
Q ss_pred HHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhhc-------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEec
Q 012256 166 QAFLLKYANSWLVDIYCHKVIRLSAATQEYANS-------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGK 237 (467)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 237 (467)
........... ....+|.++++|+...+...+ ++..+ +|++...+.+.. .............+.++|+|+
T Consensus 130 ~~~~~~~~~~~-~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~ 207 (374)
T cd03801 130 LLKLARALERR-ALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP-RAARRRLGIPEDEPVILFVGR 207 (374)
T ss_pred HHHHHHHHHHH-HHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc-hHHHhhcCCcCCCeEEEEecc
Confidence 11122222222 222369999999776544332 23333 688877765542 111122223445678999999
Q ss_pred cccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCC
Q 012256 238 MVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 238 l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~ 313 (467)
+.+.||++.+++++..+.+..++++|+++|+++....+++.+++.+. ++.+.|.+++.+ ++|+.||++++|+..|+
T Consensus 208 ~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~ 287 (374)
T cd03801 208 LVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEG 287 (374)
T ss_pred hhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhcc
Confidence 99999999999999999888889999999998888888887765554 788889998777 99999999999999999
Q ss_pred CcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHH----HHHcCCHHHHHH
Q 012256 314 VCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA----QRHQLSWESATE 384 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~----~~~~~sw~~~~~ 384 (467)
+|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++++.. .++.+ ..+.|+|+++++
T Consensus 288 ~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 288 FGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred ccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999965 58888888999988 689999999999988654 34443 348899999999
Q ss_pred HHHHHHh
Q 012256 385 RFLQVAE 391 (467)
Q Consensus 385 ~~~~~~~ 391 (467)
++.++|+
T Consensus 368 ~~~~~~~ 374 (374)
T cd03801 368 RTEEVYY 374 (374)
T ss_pred HHHHhhC
Confidence 9999874
No 41
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.98 E-value=2.4e-30 Score=255.69 Aligned_cols=251 Identities=15% Similarity=0.136 Sum_probs=178.8
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-c-EEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-Y-VVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
.+.+.+++.+||+||++.+....+. ..+.+... + .+...|........ .. .......+... ....+|.+
T Consensus 71 ~~~~~~~~~~~Dvv~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~~~~~~~~~-~~~~~~~~ 141 (358)
T cd03812 71 KLYKLIKKNKYDIVHVHGSSASGFI---LLAAKKAGVKVRIAHSHNTSDSHDK---KK--KILKYKVLRKL-INRLATDY 141 (358)
T ss_pred HHHHHHhcCCCCEEEEeCcchhHHH---HHHHhhCCCCeEEEEeccccccccc---cc--hhhHHHHHHHH-HHhcCCEE
Confidence 4556677889999999877633222 12222223 3 34455654322111 10 00111222222 22337999
Q ss_pred EEcCHhhHHhhh-----cccccc-cccCCCccccchhhH-HHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhc
Q 012256 186 IRLSAATQEYAN-----SIICNV-HGVNPKFLEIGKKKK-EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 258 (467)
Q Consensus 186 i~~S~~~~~~~~-----~~i~~i-~gvd~~~~~~~~~~~-~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~ 258 (467)
+++|....+... .++..+ ||+|...+.+..... ........++++.++|+||+.+.||++.+++++..+.+..
T Consensus 142 i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~ 221 (358)
T cd03812 142 LACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKN 221 (358)
T ss_pred EEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhC
Confidence 999976554332 344444 799987765533221 1222333456789999999999999999999999999888
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-
Q 012256 259 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 335 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~- 335 (467)
++++++|+|+|+..+.+++.+++.++ ++.++|..++..++|+.||++|+||..|++|++++||||||+|||+|+.|+
T Consensus 222 ~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~ 301 (358)
T cd03812 222 PNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK 301 (358)
T ss_pred CCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch
Confidence 99999999999998888888877765 688889855555999999999999999999999999999999999999966
Q ss_pred ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC
Q 012256 336 NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 336 ~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~ 367 (467)
.+++.++..++..+ ++++++++|.++++++..
T Consensus 302 ~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 334 (358)
T cd03812 302 EVDLTDLVKFLSLDESPEIWAEEILKLKSEDRR 334 (358)
T ss_pred hhhhccCccEEeCCCCHHHHHHHHHHHHhCcch
Confidence 58888854444444 779999999999999876
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=7.3e-31 Score=263.19 Aligned_cols=275 Identities=16% Similarity=0.128 Sum_probs=192.9
Q ss_pred hhccCCCC--CCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchH-HHHHHHHHHHHhhhhhcCE
Q 012256 109 ISEVIPDE--VADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRL-QAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 109 l~~~l~~~--~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~ 184 (467)
+.+.++.. +||+||++.... .+. +..+.+..+ |++.++|+.............. .........+. ....+|.
T Consensus 91 ~~~~~~~~~~~~Div~~~~~~~-~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ 166 (398)
T cd03800 91 LLRFLRREGGRPDLIHAHYWDS-GLV--ALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEER-LLRAADR 166 (398)
T ss_pred HHHHHHhcCCCccEEEEecCcc-chH--HHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHH-HHhhCCE
Confidence 44445555 999999975432 222 223343444 8888888754322110000000 01111122222 2233799
Q ss_pred EEEcCHhhHHhhhc-------ccccc-cccCCCccccchhhHH-HhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHH
Q 012256 185 VIRLSAATQEYANS-------IICNV-HGVNPKFLEIGKKKKE-QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 255 (467)
Q Consensus 185 vi~~S~~~~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~-~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~ 255 (467)
++++|+...+.... ++..+ +|+|.+.+.+...... ........+++.++|+||+.+.||++.+++++..+.
T Consensus 167 ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~ 246 (398)
T cd03800 167 VIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELP 246 (398)
T ss_pred EEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHH
Confidence 99999764432211 23334 7999877765443222 122223445679999999999999999999999998
Q ss_pred hhcCCeEEEEEecCCC------HHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcC
Q 012256 256 KELAGLEVDLYGNGED------FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG 325 (467)
Q Consensus 256 ~~~~~~~l~i~G~g~~------~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G 325 (467)
++.++++++++|++.. ...+++.++.+++ ++.|+|.+++.+ ++|+.||++++||..|++|++++||||||
T Consensus 247 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G 326 (398)
T cd03800 247 ELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACG 326 (398)
T ss_pred HhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcC
Confidence 8788999999998765 2334556666654 688899998887 99999999999999999999999999999
Q ss_pred CeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHH
Q 012256 326 KIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 387 (467)
Q Consensus 326 ~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~ 387 (467)
+|||+++.++ .+++.++.+|++++ |+++++++|.++++++.. .++.+++ ++|||+.++++++
T Consensus 327 ~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 327 LPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999966 58999988999987 899999999999987554 3444332 7899999999986
No 43
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.4e-30 Score=266.59 Aligned_cols=267 Identities=16% Similarity=0.145 Sum_probs=197.9
Q ss_pred CCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHH----hh--ccchHHHHHHHHHHHHhhhh--hcCEEE
Q 012256 116 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVK----RE--KNGRLQAFLLKYANSWLVDI--YCHKVI 186 (467)
Q Consensus 116 ~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~--~~d~vi 186 (467)
.++|+||++.....++. +..+.+..+ |++.+.|+.++.... .. .....+..+.+.+..+.... .||.++
T Consensus 172 ~~~dviH~~s~~~~g~~--~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii 249 (475)
T cd03813 172 PKADVYHAVSTGYAGLL--GALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRIT 249 (475)
T ss_pred CCCCEEeccCcchHHHH--HHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 47899999876443333 333343444 999999997653211 00 11222333333333333333 389999
Q ss_pred EcCHhhHHhhh------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcC
Q 012256 187 RLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA 259 (467)
Q Consensus 187 ~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~ 259 (467)
++|+..++... +++.++ ||+|.+.|.+.... ....+.+.|+|+||+.+.||++.+++|+..+++..|
T Consensus 250 ~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p 323 (475)
T cd03813 250 TLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRA------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIP 323 (475)
T ss_pred ecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCcccc------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCC
Confidence 99976554322 234444 89998877654321 122346789999999999999999999999998889
Q ss_pred CeEEEEEecCCC----HHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 260 GLEVDLYGNGED----FNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 260 ~~~l~i~G~g~~----~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+++++|+|++++ .++++++++++++ +|+|+| ..+..++|+.+|++|+||..|++|++++||||||+|||+|+.
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~ 402 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDV 402 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCC
Confidence 999999998853 4557778887776 788889 444449999999999999999999999999999999999999
Q ss_pred CC-cccccc------CCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHHHHHh
Q 012256 334 PS-NDFFKQ------FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAE 391 (467)
Q Consensus 334 g~-~e~v~~------~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 391 (467)
|+ .|++.+ +.+|++++ |+++++++|.++++++.. .++++++ +.|+|+.++++|.++|+
T Consensus 403 g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 403 GSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred CChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 66 588888 56898887 999999999999998654 4555433 77999999999999985
No 44
>PLN02949 transferase, transferring glycosyl groups
Probab=99.97 E-value=1.4e-29 Score=255.37 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=160.6
Q ss_pred hcCEEEEcCHhhHHhhhc------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHH
Q 012256 181 YCHKVIRLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 253 (467)
Q Consensus 181 ~~d~vi~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~ 253 (467)
.+|.+++.|+.+++...+ ++.++ +|+|...+...... ...+++.++++||+.++||++.+|+|+..
T Consensus 220 ~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~-------~~~~~~~il~vGR~~~~Kg~~llI~A~~~ 292 (463)
T PLN02949 220 CAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLE-------RSEDPPYIISVAQFRPEKAHALQLEAFAL 292 (463)
T ss_pred CCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCcc-------ccCCCCEEEEEEeeeccCCHHHHHHHHHH
Confidence 489999999887754332 22233 57765443211110 11235689999999999999999999998
Q ss_pred HHhh----cCCeEEEEEecCCC------HHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHH
Q 012256 254 HQKE----LAGLEVDLYGNGED------FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA 319 (467)
Q Consensus 254 l~~~----~~~~~l~i~G~g~~------~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~l 319 (467)
+.++ .++++|+|+|++.. .++++++++++++ +|.|+|.+++.+ ++|+.||++|+||..|+||++++
T Consensus 293 l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvl 372 (463)
T PLN02949 293 ALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVV 372 (463)
T ss_pred HHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHH
Confidence 7653 47899999998742 2568888888876 689999998877 99999999999999999999999
Q ss_pred HHHHcCCeEEEeCCCC-c-ccccc---CCCEEeeCCHHHHHHHHHHHHhcCCC---CccHHHH---HcCCHHHHHHHHHH
Q 012256 320 EALAMGKIVVCANHPS-N-DFFKQ---FPNCRTYDDRNGFVEATLKALAEEPA---LPTEAQR---HQLSWESATERFLQ 388 (467)
Q Consensus 320 EAma~G~PVV~t~~g~-~-e~v~~---~~~g~~~~~~~~l~~~i~~~l~~~~~---~~~~~~~---~~~sw~~~~~~~~~ 388 (467)
||||||+|||+++.|+ . |++.+ +.+|++++|+++++++|.+++++++. .|+++++ ++|||+..++++.+
T Consensus 373 EAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~ 452 (463)
T PLN02949 373 EYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKD 452 (463)
T ss_pred HHHHcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999965 3 67665 56899999999999999999986433 4554433 67999999999999
Q ss_pred HHhc
Q 012256 389 VAEL 392 (467)
Q Consensus 389 ~~~~ 392 (467)
.|+.
T Consensus 453 ~i~~ 456 (463)
T PLN02949 453 AIRP 456 (463)
T ss_pred HHHH
Confidence 9884
No 45
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.97 E-value=7e-30 Score=252.35 Aligned_cols=270 Identities=14% Similarity=0.130 Sum_probs=194.6
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
..+.+.+++.+||+||++.+....+.. ...+..+..+++.+.|+.... + .....+.+. ...+++.++
T Consensus 69 ~~~~~~~~~~~pdiv~~~~~~~~~~~~-l~~~~~~~~~~v~~~h~~~~~-------~----~~~~~~~~~-~~~~~~~~~ 135 (360)
T cd04951 69 WKLRKILRQFKPDVVHAHMFHANIFAR-LLRLFLPSPPLICTAHSKNEG-------G----RLRMLAYRL-TDFLSDLTT 135 (360)
T ss_pred HHHHHHHHhcCCCEEEEcccchHHHHH-HHHhhCCCCcEEEEeeccCch-------h----HHHHHHHHH-HhhccCceE
Confidence 345667778899999997654322221 112222223778788865321 1 111122222 222357788
Q ss_pred EcCHhhHHhh-h------cccccc-cccCCCccccchhh-HHHh-hcCCCCCCceEEEEeccccccCHHHHHHHHHHHHh
Q 012256 187 RLSAATQEYA-N------SIICNV-HGVNPKFLEIGKKK-KEQQ-QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQK 256 (467)
Q Consensus 187 ~~S~~~~~~~-~------~~i~~i-~gvd~~~~~~~~~~-~~~~-~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~ 256 (467)
++|....+.. . +++..+ ||+|...+.+.... ...+ .....+++++++|+|++.+.||++.+++++.++.+
T Consensus 136 ~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~ 215 (360)
T cd04951 136 NVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS 215 (360)
T ss_pred EEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHh
Confidence 8886544332 2 233333 79997776554322 1112 22234457789999999999999999999999988
Q ss_pred hcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 257 ELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 257 ~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
+.|+++|+|+|+|++.+.+++.+++++. ++.+.|..++..++|+.||++++||..|++|++++||||||+|||+++.|
T Consensus 216 ~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~ 295 (360)
T cd04951 216 DYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAG 295 (360)
T ss_pred hCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCC
Confidence 8899999999999998888888887765 68888987666699999999999999999999999999999999999997
Q ss_pred C-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC---CccH---HHHHcCCHHHHHHHHHHHHh
Q 012256 335 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE---AQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 335 ~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~---~~~~~~sw~~~~~~~~~~~~ 391 (467)
+ .|++.+ +|++++ |+++++++|.+++++++. .++. ...+.|||+.+++++.++|+
T Consensus 296 ~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 296 GVREVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred ChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 6 578876 666665 999999999999965544 2222 23478999999999999996
No 46
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=8.3e-30 Score=251.27 Aligned_cols=274 Identities=19% Similarity=0.223 Sum_probs=205.2
Q ss_pred hhhhccCC--CCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcC
Q 012256 107 GDISEVIP--DEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH 183 (467)
Q Consensus 107 ~~l~~~l~--~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 183 (467)
..+.+.+. ..+||+||++.+....+. .....+..+ |++..+|+.+...... .. .......... ..+|
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~--~~----~~~~~~~~~~--~~~d 150 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFA--AALLKRKLGIPLVVTLHGSDVNLLPR--KR----LLRALLRRAL--RRAD 150 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHH--HHHHHHhcCCCEEEEeecchhcccCc--hh----hHHHHHHHHH--hcCC
Confidence 34667777 889999999855444433 223333333 8899999876544321 10 1112222221 2269
Q ss_pred EEEEcCHhhHHhhhc------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHh
Q 012256 184 KVIRLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQK 256 (467)
Q Consensus 184 ~vi~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~ 256 (467)
.++++|+...+...+ .+..+ +|+|...+.+...... ........++.++|+|++.+.||++.+++++..+.+
T Consensus 151 ~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~ 229 (377)
T cd03798 151 AVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA-RKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLK 229 (377)
T ss_pred eEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH-HhccCCCCceEEEEeccCccccCHHHHHHHHHHHHh
Confidence 999999776644322 33333 7998877765443221 111233456789999999999999999999999987
Q ss_pred hcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeC
Q 012256 257 ELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 257 ~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~ 332 (467)
+.++++++++|++++...+++.+++.+. ++.+.|.+++.+ ++|+.||++++||..|++|++++|||+||+|||+++
T Consensus 230 ~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~ 309 (377)
T cd03798 230 KRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATD 309 (377)
T ss_pred cCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEec
Confidence 7889999999999988888888776655 788889999887 999999999999999999999999999999999999
Q ss_pred CCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCCccH----HHHHcCCHHHHHHHHHHHHh
Q 012256 333 HPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALPTE----AQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 333 ~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~~~~----~~~~~~sw~~~~~~~~~~~~ 391 (467)
.++ .+++.++.+|++++ |+++++++|.++++++...+.. ...+.|+|+..++++.++|+
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 310 VGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred CCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHHHHhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 976 58888888888887 9999999999999986632222 33488999999999999886
No 47
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.97 E-value=1.4e-29 Score=247.27 Aligned_cols=260 Identities=15% Similarity=0.170 Sum_probs=189.6
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
...+.+.+++.+||+|+++.+....+. ..+..+..|++...|+........ .......+. ....||.+
T Consensus 72 ~~~~~~~l~~~~~d~i~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~d~i 139 (348)
T cd03820 72 LRRLRKLLKNNKPDVVISFLTSLLTFL---ASLGLKIVKLIVSEHNSPDAYKKR--------LRRLLLRRL-LYRRADAV 139 (348)
T ss_pred hHHHHHhhcccCCCEEEEcCchHHHHH---HHHhhccccEEEecCCCccchhhh--------hHHHHHHHH-HHhcCCEE
Confidence 345677888899999999887622222 112211137788888765443320 011111111 12237999
Q ss_pred EEcCHhhHHhh----hcccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCC
Q 012256 186 IRLSAATQEYA----NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 260 (467)
Q Consensus 186 i~~S~~~~~~~----~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~ 260 (467)
+++|+...... ..++..+ +|++...+.+. ....++.++|+|++.+.||++.+++++..+.+..++
T Consensus 140 i~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~ 209 (348)
T cd03820 140 VVLTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS----------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPD 209 (348)
T ss_pred EEeCHHHHHHhhccCCCCeEEecCCcChhhcccc----------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCC
Confidence 99997764111 1223333 67776554432 123366899999999999999999999999888899
Q ss_pred eEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc-
Q 012256 261 LEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN- 336 (467)
Q Consensus 261 ~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~- 336 (467)
++|+|+|++++...+++.+++.+. ++.+.|..++..++|+.||++++||..|++|++++|||+||+|||+++. ++.
T Consensus 210 ~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~ 289 (348)
T cd03820 210 WKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS 289 (348)
T ss_pred eEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchH
Confidence 999999999998888888887766 5777787444449999999999999999999999999999999999997 444
Q ss_pred cccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHH---HHHcCCHHHHHHHHH
Q 012256 337 DFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA---QRHQLSWESATERFL 387 (467)
Q Consensus 337 e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~---~~~~~sw~~~~~~~~ 387 (467)
+++.++.+|++++ |+++++++|.+++++++. .++++ ..+.|+|+++++++.
T Consensus 290 ~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 290 EIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred hhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 6667767999887 889999999999998664 44443 348899999999875
No 48
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=9.4e-30 Score=255.29 Aligned_cols=273 Identities=14% Similarity=0.091 Sum_probs=187.4
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhc--cchHHHHHH----HHHHHHhhhh-
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREK--NGRLQAFLL----KYANSWLVDI- 180 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~- 180 (467)
.+.+.+.+.++|+||++......+.. ......|.+...|+...+...... ....+.++. +.+..+....
T Consensus 95 ~l~~~~~~~~~D~v~~~~~~~~~~~~----~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 170 (397)
T TIGR03087 95 WVNALLAAEPVDAIVVFSSAMAQYVT----PHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERAIA 170 (397)
T ss_pred HHHHHHhhCCCCEEEEeccccceecc----ccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 45566778899999998654443331 111123788778764332221111 111111111 1112222222
Q ss_pred -hcCEEEEcCHhhHHhhh-------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHH---
Q 012256 181 -YCHKVIRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELL--- 248 (467)
Q Consensus 181 -~~d~vi~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li--- 248 (467)
.+|.++++|+...+... .++..+ ||+|.+.|.+..... ....++++.++|+|++.+.||++.++
T Consensus 171 ~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~----~~~~~~~~~ilf~G~l~~~k~~~~l~~~~ 246 (397)
T TIGR03087 171 ARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYP----NPYPPGKRVLVFTGAMDYWPNIDAVVWFA 246 (397)
T ss_pred hhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCcccc----CCCCCCCcEEEEEEecCCccCHHHHHHHH
Confidence 28999999977554332 233344 899998886543211 00123356899999999999999988
Q ss_pred -HHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC-CCCCcHHHHHHHHcCC
Q 012256 249 -ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST-TDVVCTTTAEALAMGK 326 (467)
Q Consensus 249 -~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~-~e~~~~~~lEAma~G~ 326 (467)
++++.+.+..|+++|+|+|+|++ ..++++.. ..+++|.|.+++...+|+.||++|+||. .||+|++++||||||+
T Consensus 247 ~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~--~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~ 323 (397)
T TIGR03087 247 ERVFPAVRARRPAAEFYIVGAKPS-PAVRALAA--LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAK 323 (397)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCh-HHHHHhcc--CCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCC
Confidence 55666777779999999999986 34444322 2368899999876699999999999997 5999999999999999
Q ss_pred eEEEeCCCCccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHHHHHh
Q 012256 327 IVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAE 391 (467)
Q Consensus 327 PVV~t~~g~~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 391 (467)
|||+|+.+...+.....+|++++ |+++++++|.++++++.. .++.+++ ++|||+..++++.++|+
T Consensus 324 PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 324 PVVASPEAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred CEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999986544444445677776 999999999999988654 5555443 68999999999999986
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=3.7e-30 Score=253.31 Aligned_cols=256 Identities=16% Similarity=0.146 Sum_probs=190.6
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
.+.+.+++.+||+||++.+..+... ...+.++.. |++..+|+.+..... ...... ..|.++
T Consensus 87 ~~~~~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~hd~~~~~~~-----------~~~~~~-----~~d~ii 148 (359)
T cd03823 87 EFARLLEDFRPDVVHFHHLQGLGVS--ILRAARDRGIPIVLTLHDYWLICPR-----------QGLFKK-----GGDAVI 148 (359)
T ss_pred HHHHHHHHcCCCEEEECCccchHHH--HHHHHHhcCCCEEEEEeeeeeecch-----------hhhhcc-----CCCEEE
Confidence 4566677889999999886444332 222333333 889999975422111 000000 128999
Q ss_pred EcCHhhHHhhhc------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcC
Q 012256 187 RLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA 259 (467)
Q Consensus 187 ~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~ 259 (467)
++|+...+...+ ++..+ ||+|...+.+... ....+++.++|+|++.+.||++.+++++..+.+ +
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~-------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~ 219 (359)
T cd03823 149 APSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR-------APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--G 219 (359)
T ss_pred EeCHHHHHHHHHcCCCccceEEecCCcChhhcccccc-------CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--c
Confidence 999776543322 22233 7888766654332 123346789999999999999999999999876 7
Q ss_pred CeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCC-CCCCcHHHHHHHHcCCeEEEeCCCC-
Q 012256 260 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPS- 335 (467)
Q Consensus 260 ~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~-~e~~~~~~lEAma~G~PVV~t~~g~- 335 (467)
+++|+++|.++......... ....++.++|.++..+ ++|+.||++++||. .|++|++++||||||+|||+|+.++
T Consensus 220 ~~~l~i~G~~~~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 298 (359)
T cd03823 220 DIELVIVGNGLELEEESYEL-EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGM 298 (359)
T ss_pred CcEEEEEcCchhhhHHHHhh-cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCH
Confidence 89999999988765544433 3444889999998777 99999999999997 7999999999999999999999966
Q ss_pred ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHHHcCCHHHHHHHHHHHHh
Q 012256 336 NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 336 ~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~~ 391 (467)
.+++.++.+|++++ |+++++++|.++++++.. .++++.++.++++.++++++++|+
T Consensus 299 ~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T cd03823 299 AELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSIEDQAEEYLKLYR 358 (359)
T ss_pred HHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhHHHHHHHHHHHhh
Confidence 58888888899887 799999999999997654 556666677777999999999986
No 50
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.97 E-value=5e-30 Score=261.07 Aligned_cols=263 Identities=14% Similarity=0.143 Sum_probs=189.0
Q ss_pred ccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHh-hhhhcCEEEEc
Q 012256 111 EVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWL-VDIYCHKVIRL 188 (467)
Q Consensus 111 ~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi~~ 188 (467)
+.|...++||+|+..+....+. .+..... +.+.++|+............. .+.+...... ....+|.+|++
T Consensus 205 ~~L~~~~~di~i~dr~~~~~~~----~~~~~~~~~~v~~lH~~h~~~~~~~~~~~---~~~~~y~~~~~~~~~~D~iI~~ 277 (500)
T TIGR02918 205 KQLNLTKKDIIILDRSTGIGQA----VLENKGPAKLGVVVHAEHFSESATNETYI---LWNNYYEYQFSNADYIDFFITA 277 (500)
T ss_pred HHHhCCCCCEEEEcCCcccchH----HHhcCCCceEEEEEChhhhcCccCcchhH---HHHHHHHHHHhchhhCCEEEEC
Confidence 3344568999999888766554 2232323 788899975432221111111 0111111111 11226999999
Q ss_pred CHhhHHhhh----------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 189 SAATQEYAN----------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 189 S~~~~~~~~----------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
|+..++... .++..+ +|++...+.+.. ......|+|+||+.+.||++.+++|+..+.+.
T Consensus 278 S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~----------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~ 347 (500)
T TIGR02918 278 TDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ----------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKS 347 (500)
T ss_pred CHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc----------ccCCeEEEEEeccccccCHHHHHHHHHHHHhh
Confidence 975443221 122233 576554433211 11245799999999999999999999999988
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC-
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP- 334 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g- 334 (467)
.|+++|+|+|+|++.+.++++++++++ .|.|.|.. +..++|+.||++|+||..||||++++||||||+|||+++.+
T Consensus 348 ~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~ 426 (500)
T TIGR02918 348 VPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY 426 (500)
T ss_pred CCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCC
Confidence 999999999999998899999988766 57888965 44589999999999999999999999999999999999984
Q ss_pred C-ccccccCCCEEeeC-C---------HHHHHHHHHHHHhcCCC-CccHHHH---HcCCHHHHHHHHHHHHh
Q 012256 335 S-NDFFKQFPNCRTYD-D---------RNGFVEATLKALAEEPA-LPTEAQR---HQLSWESATERFLQVAE 391 (467)
Q Consensus 335 ~-~e~v~~~~~g~~~~-~---------~~~l~~~i~~~l~~~~~-~~~~~~~---~~~sw~~~~~~~~~~~~ 391 (467)
+ .|++.++.+|++++ + +++++++|.++++++.. .|+++++ +.|||+.+++++.++++
T Consensus 427 G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 427 GNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFLTANIIEKWKKLVR 498 (500)
T ss_pred CCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5 59999999999986 2 88999999999943222 4555443 78999999999999886
No 51
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.97 E-value=2e-29 Score=248.15 Aligned_cols=343 Identities=16% Similarity=0.100 Sum_probs=227.4
Q ss_pred eEEEEEeccCCccccccchhHHH-HHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFR-AAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTS 85 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~-~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (467)
||+++++.+.+ || +...+.. ++.|.+.| +++.++... .......... . .
T Consensus 1 ~i~~i~~~~~~--gG-~~~~~~~l~~~l~~~~--------------~~v~~~~~~----~~~~~~~~~~----~-----~ 50 (365)
T cd03807 1 KVLHVITGLDV--GG-AERMLVRLLKGLDRDR--------------FEHVVISLT----DRGELGEELE----E-----A 50 (365)
T ss_pred CeEEEEeeccC--cc-HHHHHHHHHHHhhhcc--------------ceEEEEecC----cchhhhHHHH----h-----c
Confidence 49999999955 56 4455544 59999999 777664321 0111111000 0 1
Q ss_pred CccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchH
Q 012256 86 TFDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRL 165 (467)
Q Consensus 86 ~~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~ 165 (467)
++.+...+... ..........+.+.+++.+||+||++......+.. ...+.....+++...|+...... . .
T Consensus 51 ~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~div~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~-----~-~ 121 (365)
T cd03807 51 GVPVYCLGKRP--GRPDPGALLRLYKLIRRLRPDVVHTWMYHADLYGG-LAARLAGVPPVIWGIRHSDLDLG-----K-K 121 (365)
T ss_pred CCeEEEEeccc--ccccHHHHHHHHHHHHhhCCCEEEeccccccHHHH-HHHHhcCCCcEEEEecCCccccc-----c-h
Confidence 12221111100 01222233456777788899999997654322221 11111123378888887664421 0 1
Q ss_pred HHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhhc------ccccc-cccCCCccccchhhHH-H-hhcCCCCCCceEEEEe
Q 012256 166 QAFLLKYANSWLVDIYCHKVIRLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKE-Q-QQNGTHAFAKGAYYIG 236 (467)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~-~-~~~~~~~~~~~il~vG 236 (467)
.......+.... ...+|.++++|+...+.... ++..+ ||+|...+.+...... . .+...+++.+.++|+|
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 200 (365)
T cd03807 122 STRLVARLRRLL-SSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVA 200 (365)
T ss_pred hHhHHHHHHHHh-ccccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEec
Confidence 112223333331 22368889999775544322 23333 7998776655332211 1 2223345567899999
Q ss_pred ccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHH-hcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCC
Q 012256 237 KMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAE-KLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 237 rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~-~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~ 313 (467)
++.+.||++.+++++..+.+..++++|+++|.++....++.... +.++ ++.+.|..++..++|+.||++++||..|+
T Consensus 201 ~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~ 280 (365)
T cd03807 201 RLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEG 280 (365)
T ss_pred ccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCcccc
Confidence 99999999999999999988889999999999988777776665 5554 67777877666699999999999999999
Q ss_pred CcHHHHHHHHcCCeEEEeCCCCc-cccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHH----HHHcCCHHHHHH
Q 012256 314 VCTTTAEALAMGKIVVCANHPSN-DFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA----QRHQLSWESATE 384 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~~-e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~----~~~~~sw~~~~~ 384 (467)
+|++++||||||+|||+++.|+. +++.+ +|++++ |+++++++|.+++++++. .++++ .+++|||+.+++
T Consensus 281 ~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 358 (365)
T cd03807 281 FPNVLLEAMACGLPVVATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVE 358 (365)
T ss_pred CCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999764 77776 787776 999999999999998654 33333 237899999999
Q ss_pred HHHHHHh
Q 012256 385 RFLQVAE 391 (467)
Q Consensus 385 ~~~~~~~ 391 (467)
++.++|+
T Consensus 359 ~~~~~y~ 365 (365)
T cd03807 359 AYEELYR 365 (365)
T ss_pred HHHHHhC
Confidence 9999985
No 52
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=4.9e-30 Score=253.40 Aligned_cols=268 Identities=16% Similarity=0.137 Sum_probs=187.8
Q ss_pred hhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEc
Q 012256 109 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRL 188 (467)
Q Consensus 109 l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 188 (467)
....+...+||+||++....... .....|++..+|+..+......................+ ..+|.++++
T Consensus 77 ~~~~~~~~~~Dii~~~~~~~~~~-------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~~ 147 (365)
T cd03809 77 DRLLLLLLGLDLLHSPHNTAPLL-------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRAL--RRADAIITV 147 (365)
T ss_pred HHHHhhhcCCCeeeecccccCcc-------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHH--HHcCEEEEc
Confidence 33444457899999977554432 112248899999766544322111111122222222222 237999999
Q ss_pred CHhhHHhhh-------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCC
Q 012256 189 SAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 260 (467)
Q Consensus 189 S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~ 260 (467)
|+...+... .++..+ +|++...+....... ........+++.++|+|++.+.||++.+++++..+.+..++
T Consensus 148 s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~ 226 (365)
T cd03809 148 SEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPD 226 (365)
T ss_pred cHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCC
Confidence 977554322 233333 799887776543322 22222344567899999999999999999999999988788
Q ss_pred eEEEEEecCCCH-HHHHHHHHhcC--CeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 261 LEVDLYGNGEDF-NQIQEAAEKLK--IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 261 ~~l~i~G~g~~~-~~l~~~~~~~~--~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
++++++|.+... ....+..++.+ .++.++|.+++.+ ++|+.||++++||..|++|++++||||+|+|||+++.|+
T Consensus 227 ~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~ 306 (365)
T cd03809 227 PKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS 306 (365)
T ss_pred CCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC
Confidence 999999976552 33333223333 3788889998887 999999999999999999999999999999999999976
Q ss_pred -ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHH---HHcCCHHHHHHHHHH
Q 012256 336 -NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ---RHQLSWESATERFLQ 388 (467)
Q Consensus 336 -~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~---~~~~sw~~~~~~~~~ 388 (467)
.|++.+ +|++++ |+++++++|.++++++.. .+++++ .++|||++.++++++
T Consensus 307 ~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~~~ 365 (365)
T cd03809 307 LPEVAGD--AALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRTLD 365 (365)
T ss_pred ccceecC--ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHhC
Confidence 477654 466665 899999999999887665 444443 488999999998863
No 53
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=6.2e-30 Score=252.22 Aligned_cols=257 Identities=15% Similarity=0.097 Sum_probs=191.7
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhcc-CCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTK-FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
.+.+.+++.++|+||++......... ....+. ..+++.++|+....... . . ......+ ..+|.++
T Consensus 70 ~~~~~~~~~~~Dii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~-~-----~~~~~~~--~~~~~vi 135 (355)
T cd03799 70 VLARELRRLGIDHIHAHFGTTPATVA--MLASRLGGIPYSFTAHGKDIFRSP----D-A-----IDLDEKL--ARADFVV 135 (355)
T ss_pred HHHHHHHhcCCCEEEECCCCchHHHH--HHHHHhcCCCEEEEEecccccccC----c-h-----HHHHHHH--hhCCEEE
Confidence 45556667899999998764333221 111111 23788888865422111 0 0 1111111 2269999
Q ss_pred EcCHhhHHhhhc-------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhc
Q 012256 187 RLSAATQEYANS-------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 258 (467)
Q Consensus 187 ~~S~~~~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~ 258 (467)
++|+...+...+ ++..+ +|+|...+.+... .....+..++|+|++.+.||++.+++++..+.+..
T Consensus 136 ~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~-------~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~ 208 (355)
T cd03799 136 AISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPP-------PPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRG 208 (355)
T ss_pred ECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccc-------cccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcC
Confidence 999876654433 22233 7998777665430 12234668999999999999999999999998777
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCC------CCCcHHHHHHHHcCCeE
Q 012256 259 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTT------DVVCTTTAEALAMGKIV 328 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~------e~~~~~~lEAma~G~PV 328 (467)
++++++++|+++..+.+++.+++.++ ++++.|.+++.+ ++|+.||++++||.. |++|++++||||||+||
T Consensus 209 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pv 288 (355)
T cd03799 209 IDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPV 288 (355)
T ss_pred CCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCE
Confidence 89999999999998889888887755 688899998777 999999999999999 99999999999999999
Q ss_pred EEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHH
Q 012256 329 VCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATER 385 (467)
Q Consensus 329 V~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~ 385 (467)
|+++.|+ .+++.++.+|++++ |+++++++|.++++++.. .++++++ ++|||+..+++
T Consensus 289 i~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 289 ISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred EecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 9999966 58898888999887 999999999999988764 4444433 68999998875
No 54
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=4.7e-30 Score=255.73 Aligned_cols=278 Identities=13% Similarity=-0.007 Sum_probs=192.4
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcE-EEEEecchHHHHHhhccchHHHHHHHHHHH-HhhhhhcC
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYV-VGIVHTNYLEYVKREKNGRLQAFLLKYANS-WLVDIYCH 183 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~-v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 183 (467)
+..+..++++.+|||||++......+...+.++. ..|+ +...|+.++.... .+....+..... ......+|
T Consensus 269 ~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~la--gvpviv~~~h~~~~~~~~-----r~~~~e~~~~~~a~~i~~~sd 341 (578)
T PRK15490 269 IKHLVPHLCERKLDYLSVWQDGACLMIALAALIA--GVPRIQLGLRGLPPVVRK-----RLFKPEYEPLYQALAVVPGVD 341 (578)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhc--CCCEEEEeecccCCcchh-----hHHHHHHHHhhhhceeEecch
Confidence 4567888899999999998644321211112222 1365 4456652221110 000111111112 11122245
Q ss_pred EEEEcCHhhHHh-------hhcccccc-cccCCCccccchhhH--HHh--hcCCCCCCceEEEEeccccccCHHHHHHHH
Q 012256 184 KVIRLSAATQEY-------ANSIICNV-HGVNPKFLEIGKKKK--EQQ--QNGTHAFAKGAYYIGKMVWSKGYKELLELL 251 (467)
Q Consensus 184 ~vi~~S~~~~~~-------~~~~i~~i-~gvd~~~~~~~~~~~--~~~--~~~~~~~~~~il~vGrl~~~Kg~~~li~a~ 251 (467)
+++.|..+.+. ..+++.+| ||||+..|.+..... .+. ....++..++++++||+.+.||...+++++
T Consensus 342 -~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~ 420 (578)
T PRK15490 342 -FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFA 420 (578)
T ss_pred -hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHH
Confidence 66777554432 23455556 899988877643211 111 111123456899999999999999999999
Q ss_pred HHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEE
Q 012256 252 DDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 329 (467)
Q Consensus 252 ~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV 329 (467)
..+.+..|+++|+|+|+|+..+++++.++++++ +|.|+|..++..++|+.+|+||+||.+|+||++++||||||+|||
T Consensus 421 a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVV 500 (578)
T PRK15490 421 ARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVI 500 (578)
T ss_pred HHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEE
Confidence 988877899999999999999999999988876 688999876666999999999999999999999999999999999
Q ss_pred EeCCCC-ccccccCCCEEeeC--CHHHHHHHHH---HHHhcCCC--CccHHH----HHcCCHHHHHHHHHHHHh
Q 012256 330 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATL---KALAEEPA--LPTEAQ----RHQLSWESATERFLQVAE 391 (467)
Q Consensus 330 ~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~---~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~ 391 (467)
+|+.|+ .|++.++.+|++++ |++++++++. .+.+.... .++.++ .++|||+.++++|.++|.
T Consensus 501 ATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~ 574 (578)
T PRK15490 501 STPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIA 574 (578)
T ss_pred EeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 999966 59999999999998 7778877763 23332221 243433 378999999999999998
No 55
>PLN02275 transferase, transferring glycosyl groups
Probab=99.97 E-value=7.8e-29 Score=245.97 Aligned_cols=244 Identities=12% Similarity=0.027 Sum_probs=171.0
Q ss_pred CCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHh-hccchHHHHHHHHHHHHhhhhhcCEEEEcCH
Q 012256 113 IPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKR-EKNGRLQAFLLKYANSWLVDIYCHKVIRLSA 190 (467)
Q Consensus 113 l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 190 (467)
++..+||+||+++++.+.....+....+..+ |++.++|+........ ...........+.++++. ...||.+|++|+
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~ad~ii~~S~ 174 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHY-GKMADGHLCVTK 174 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHH-HhhCCEEEECCH
Confidence 3568999999987665433211222333334 8888899764221110 011112223444444442 223899999998
Q ss_pred hhHHhhhc--c--cccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHH----------
Q 012256 191 ATQEYANS--I--ICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ---------- 255 (467)
Q Consensus 191 ~~~~~~~~--~--i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~---------- 255 (467)
..++...+ + +.++ || +.+.|.+..... ....+....++++||+.+.||++.+++|+..+.
T Consensus 175 ~~~~~l~~~~g~~i~vi~n~-~~~~f~~~~~~~----~~~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~ 249 (371)
T PLN02275 175 AMQHELDQNWGIRATVLYDQ-PPEFFRPASLEI----RLRPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNES 249 (371)
T ss_pred HHHHHHHHhcCCCeEEECCC-CHHHcCcCCchh----cccCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccc
Confidence 87654432 2 2233 45 344454432211 111223457889999999999999999998874
Q ss_pred -------hhcCCeEEEEEecCCCHHHHHHHHHhcCC-eeEEec-CCCCHH--HHHHhcCeEEecCC---CCCCcHHHHHH
Q 012256 256 -------KELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVYP-GRDHAD--LIFHDYKVFLNPST---TDVVCTTTAEA 321 (467)
Q Consensus 256 -------~~~~~~~l~i~G~g~~~~~l~~~~~~~~~-~v~~~g-~~~~~~--~~~~~adv~v~ps~---~e~~~~~~lEA 321 (467)
+..|+++|+|+|+|++.+++++.++++++ ++.|++ .++.++ ++|+.||+||.|+. .|++|++++||
T Consensus 250 ~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEA 329 (371)
T PLN02275 250 DSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDM 329 (371)
T ss_pred cccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHH
Confidence 23578999999999999999999998887 577776 477766 99999999998632 38899999999
Q ss_pred HHcCCeEEEeCCCC-ccccccCCCEEeeCCHHHHHHHHHHHH
Q 012256 322 LAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKAL 362 (467)
Q Consensus 322 ma~G~PVV~t~~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l 362 (467)
||||+|||+++.|+ .|++.++.+|++++|+++++++|.+++
T Consensus 330 mA~G~PVVa~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 330 FGCGLPVCAVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HHCCCCEEEecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 99999999999966 599999999999999999999998864
No 56
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=4.1e-29 Score=247.38 Aligned_cols=319 Identities=18% Similarity=0.122 Sum_probs=217.1
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTG 82 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (467)
|| |+++++. +..+|........+++|.++| |+|.|+... . .
T Consensus 1 Mk---Il~~~~~--~~~gG~~~~~~~l~~~l~~~G--------------~~v~v~~~~---~-~---------------- 41 (365)
T cd03825 1 MK---VLHLNTS--DISGGAARAAYRLHRALQAAG--------------VDSTMLVQE---K-K---------------- 41 (365)
T ss_pred Ce---EEEEecC--CCCCcHHHHHHHHHHHHHhcC--------------CceeEEEee---c-c----------------
Confidence 67 9999875 455664444444459999999 888886542 0 0
Q ss_pred CCCCccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchh-hhhhhhccCCcEEEEEecchHHHHHh--
Q 012256 83 FTSTFDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFH-HGKRWKTKFRYVVGIVHTNYLEYVKR-- 159 (467)
Q Consensus 83 ~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~-~~~~~~~~~~~~v~~~h~~~~~~~~~-- 159 (467)
.+.+.+...+||+||++......+.. ....+. +..|.+.++|+.++.....
T Consensus 42 -------------------------~~~~~~~~~~~diih~~~~~~~~~~~~~~~~~~-~~~~~v~~~hd~~~~~~~~~~ 95 (365)
T cd03825 42 -------------------------ALISKIEIINADIVHLHWIHGGFLSIEDLSKLL-DRKPVVWTLHDMWPFTGGCHY 95 (365)
T ss_pred -------------------------hhhhChhcccCCEEEEEccccCccCHHHHHHHH-cCCCEEEEcccCcccccccCC
Confidence 13445567889999997643322221 011111 1348999999764321100
Q ss_pred ------h-----------ccc--hHHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhhc-------ccccc-cccCCCccc
Q 012256 160 ------E-----------KNG--RLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANS-------IICNV-HGVNPKFLE 212 (467)
Q Consensus 160 ------~-----------~~~--~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~-------~i~~i-~gvd~~~~~ 212 (467)
+ ... .......+...... ...++.++++|+...+...+ ++.++ ||+|.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~ 174 (365)
T cd03825 96 PGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAW-ADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFR 174 (365)
T ss_pred ccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHh-ccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccC
Confidence 0 000 11122222222221 12267899999876655432 33333 799988776
Q ss_pred cchhhHHHhhcCCCCCCceEEEEecccc--ccCHHHHHHHHHHHHhh-cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEe
Q 012256 213 IGKKKKEQQQNGTHAFAKGAYYIGKMVW--SKGYKELLELLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY 289 (467)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~il~vGrl~~--~Kg~~~li~a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~ 289 (467)
+............+++...+++.|+... .||++.+++++..+.++ .++++++++|+++..... ....++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-----~~~~~v~~~ 249 (365)
T cd03825 175 PRDKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-----DLPFPVHYL 249 (365)
T ss_pred CCcHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-----cCCCceEec
Confidence 5443333333333444566777777655 89999999999998765 589999999998763321 344478889
Q ss_pred cCCCCHH---HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 290 PGRDHAD---LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 290 g~~~~~~---~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
|++++.+ ++|+.||++++||..|++|++++|||+||+|||+++.|+ .|++.++.+|++++ |++++++++.++++
T Consensus 250 g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~ 329 (365)
T cd03825 250 GSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLA 329 (365)
T ss_pred CCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 9998443 899999999999999999999999999999999999966 58898888999887 89999999999998
Q ss_pred cCCC--CccHHH----HHcCCHHHHHHHHHHHHhc
Q 012256 364 EEPA--LPTEAQ----RHQLSWESATERFLQVAEL 392 (467)
Q Consensus 364 ~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 392 (467)
++.. .++.++ ..+|||+.++++++++|+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 330 DPDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 8653 444433 3689999999999999973
No 57
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=1.4e-29 Score=252.89 Aligned_cols=194 Identities=12% Similarity=0.048 Sum_probs=140.9
Q ss_pred cCEEEEcCHhhHHhhh-----cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEecc--ccccCHHHHHHHHHH
Q 012256 182 CHKVIRLSAATQEYAN-----SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKM--VWSKGYKELLELLDD 253 (467)
Q Consensus 182 ~d~vi~~S~~~~~~~~-----~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl--~~~Kg~~~li~a~~~ 253 (467)
++.+|++|+...+... ..+.++ ||||++.+.+....... ...++++.++++|+. .++||++.+++|+..
T Consensus 191 ~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~~~~~~~~---~~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~ 267 (405)
T PRK10125 191 GCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILAELPPV---RETQGKPKIAVVAHDLRYDGKTDQQLVREMMA 267 (405)
T ss_pred CcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCccccccccccccc---ccCCCCCEEEEEEeccccCCccHHHHHHHHHh
Confidence 4789999987664432 334445 79996432221111100 012346689999994 478999999999988
Q ss_pred HHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH---HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEE
Q 012256 254 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 330 (467)
Q Consensus 254 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~ 330 (467)
+ .++++|+|+|+|+... ..++.++|...+.+ ++|+.||+||+||..|+||++++||||||+|||+
T Consensus 268 l---~~~~~L~ivG~g~~~~---------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa 335 (405)
T PRK10125 268 L---GDKIELHTFGKFSPFT---------AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA 335 (405)
T ss_pred C---CCCeEEEEEcCCCccc---------ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE
Confidence 6 3579999999876421 12577778765543 8999999999999999999999999999999999
Q ss_pred eCCCCc-cccccCCCEEeeC--CHHHHHHHHHHHHhcCCC-----CccHHHHHcCCHHHHHHHHHHHHh
Q 012256 331 ANHPSN-DFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-----LPTEAQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 331 t~~g~~-e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~sw~~~~~~~~~~~~ 391 (467)
|+.|+. |++.+. +|++++ |+++|++++...+.+... ...+...++|||+.++++|+++|+
T Consensus 336 t~~gG~~Eiv~~~-~G~lv~~~d~~~La~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 336 THSDAAREVLQKS-GGKTVSEEEVLQLAQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred eCCCChHHhEeCC-cEEEECCCCHHHHHhccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999774 777664 899998 999999876543332210 111123478999999999999997
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.97 E-value=1.2e-28 Score=241.85 Aligned_cols=268 Identities=18% Similarity=0.163 Sum_probs=188.6
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
..+.+.+++.+||+||++......+.. .........+++...|+....... ..........+.++. ...+|.++
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~d~ii 143 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGILGR-LAARLAGVPKVIYTVHGLGFVFTS----GGLKRRLYLLLERLA-LRFTDKVI 143 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhHHH-HHHHHcCCCCEEEEecCcchhhcc----chhHHHHHHHHHHHH-HhhccEEE
Confidence 456677788999999997543322221 111111223677777775443321 111222333333332 22369999
Q ss_pred EcCHhhHHhhhc-c-------cccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 187 RLSAATQEYANS-I-------ICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 187 ~~S~~~~~~~~~-~-------i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
++|+...+...+ . +... +|++...+.+.... ...+++.++|+|++.+.||++.+++++..+.+.
T Consensus 144 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~ 216 (359)
T cd03808 144 FQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAK 216 (359)
T ss_pred EcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhc
Confidence 999776543322 1 1111 57776655443321 123467899999999999999999999999887
Q ss_pred cCCeEEEEEecCCCHHHHHHH-HHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEA-AEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~-~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
.++++|+|+|.++........ +...+. +++++|..++..++|+.||++++||..|++|++++|||+||+|||+|+.+
T Consensus 217 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~ 296 (359)
T cd03808 217 GPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVP 296 (359)
T ss_pred CCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCC
Confidence 889999999998875554442 334333 78888986655599999999999999999999999999999999999996
Q ss_pred C-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHH----HHcCCHHHHHHHHH
Q 012256 335 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFL 387 (467)
Q Consensus 335 ~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~ 387 (467)
+ .+++.++.+|++++ |+++++++|.+++.++.. .++.++ .++|||+.++++++
T Consensus 297 ~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 297 GCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred CchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 6 58888888999987 899999999999888654 444433 37899999999875
No 59
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.97 E-value=1e-28 Score=243.72 Aligned_cols=257 Identities=17% Similarity=0.171 Sum_probs=184.2
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
...+.+.+.+.+||+||++.+... +. +..+.+..+ |++..+|+.+.... .. ...+ ..+|.
T Consensus 67 ~~~l~~~~~~~~~dii~~~~~~~~-~~--~~~~~~~~~~~~i~~~h~~~~~~~----------~~----~~~~--~~~~~ 127 (355)
T cd03819 67 VARLRRLIREEKVDIVHARSRAPA-WS--AYLAARRTRPPFVTTVHGFYSVNF----------RY----NAIM--ARGDR 127 (355)
T ss_pred HHHHHHHHHHcCCCEEEECCCchh-HH--HHHHHHhcCCCEEEEeCCchhhHH----------HH----HHHH--HhcCE
Confidence 345667778899999999864332 22 112233334 88999998754321 11 1111 23699
Q ss_pred EEEcCHhhHHhhh-------cccccc-cccCCCccccchhhH-----HHhhcCCCCCCceEEEEeccccccCHHHHHHHH
Q 012256 185 VIRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKK-----EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELL 251 (467)
Q Consensus 185 vi~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~-----~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~ 251 (467)
++++|+...+... .++..+ ||+|...+.+..... ........++.+.++|+||+.+.||++.+++++
T Consensus 128 vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~ 207 (355)
T cd03819 128 VIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEAL 207 (355)
T ss_pred EEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHH
Confidence 9999977664433 223333 799987776533211 111222344567899999999999999999999
Q ss_pred HHHHhhcCCeEEEEEecCCCHHH----HHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecC-CCCCCcHHHHHHHHc
Q 012256 252 DDHQKELAGLEVDLYGNGEDFNQ----IQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPS-TTDVVCTTTAEALAM 324 (467)
Q Consensus 252 ~~l~~~~~~~~l~i~G~g~~~~~----l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps-~~e~~~~~~lEAma~ 324 (467)
..+++..++++++|+|+++..+. +.+.+.+++. ++.++|..++..++|+.||++++|| ..|++|++++|||||
T Consensus 208 ~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~ 287 (355)
T cd03819 208 ARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAM 287 (355)
T ss_pred HHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhc
Confidence 99988778999999998876433 3445565554 6888899555559999999999999 789999999999999
Q ss_pred CCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC---CccHHHH----HcCCHHH
Q 012256 325 GKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTEAQR----HQLSWES 381 (467)
Q Consensus 325 G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~~~~----~~~sw~~ 381 (467)
|+|||+++.|+ .|++.++.+|++++ |+++++++|..++..++. .++++++ ++|||+.
T Consensus 288 G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 288 GRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred CCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999966 58999988999887 999999999877764444 3444333 7788875
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.96 E-value=1e-27 Score=240.73 Aligned_cols=254 Identities=15% Similarity=0.080 Sum_probs=184.0
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCC--cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhh
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 192 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 192 (467)
..++|++|.......... ...+.++.. +++.+.|+.+..... ... ....+.+. ....+|.++++|+..
T Consensus 125 ~~~~~v~~sy~~~~~~~~--~~~l~~~~~~~~~i~~~Hg~d~~~~~-~~~------~~~~~~~~-~~~~~d~ii~~S~~~ 194 (407)
T cd04946 125 DGQGTVFYSYWLHETAYA--LALLKKEYLRKRVISRAHGYDLYEDR-YPS------GYIPLRRY-LLSSLDAVFPCSEQG 194 (407)
T ss_pred ccCceEEEEecCchHHHH--HHHHHHhcCCceEEEEeccchhhhhh-ccc------cchHHHHH-HHhcCCEEEECCHHH
Confidence 456788887543333222 223333333 388999986642211 111 01111111 112369999999876
Q ss_pred HHhhhc-------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcC--CeE
Q 012256 193 QEYANS-------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA--GLE 262 (467)
Q Consensus 193 ~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~--~~~ 262 (467)
.+...+ ++.++ +|++...+.+.. ...+.+.++++|++.+.||++.+++++..+.+..| ++.
T Consensus 195 ~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~---------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~ 265 (407)
T cd04946 195 RNYLQKRYPAYKEKIKVSYLGVSDPGIISKP---------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIK 265 (407)
T ss_pred HHHHHHHCCCccccEEEEECCcccccccCCC---------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEE
Confidence 654432 22233 688865554321 12235689999999999999999999999988776 567
Q ss_pred EEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHh--cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-
Q 012256 263 VDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 335 (467)
Q Consensus 263 l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~--adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~- 335 (467)
++++|+|++.+.+++++++.+. ++.|+|.+++.+ ++|+. +|+|++||..||+|++++||||||+|||+|+.|+
T Consensus 266 ~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 266 WTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred EEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 7889999998889988876554 688899999888 88875 6899999999999999999999999999999976
Q ss_pred ccccccCCCEEeeC---CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHH
Q 012256 336 NDFFKQFPNCRTYD---DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 387 (467)
Q Consensus 336 ~e~v~~~~~g~~~~---~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~ 387 (467)
.|++.++.+|++++ |+++++++|.++++++.. .|+++++ ++|||+...+++.
T Consensus 346 ~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 346 PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 59999998998875 789999999999987655 5666554 7899999988875
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.96 E-value=1.7e-27 Score=235.18 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=176.5
Q ss_pred hccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecch-------HHHHHhhccch--HHHHHHHHHHHHhhh-
Q 012256 110 SEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNY-------LEYVKREKNGR--LQAFLLKYANSWLVD- 179 (467)
Q Consensus 110 ~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~- 179 (467)
.+.+...++|+|++..+...... ......+.+..+|+.. ..+........ ......+.+..+..+
T Consensus 76 ~~~~~~~~~D~v~~~~~~~~~~~-----~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (351)
T cd03804 76 IEQFDLSGYDLVISSSHAVAKGV-----ITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRS 150 (351)
T ss_pred HHhccccCCCEEEEcCcHHhccc-----cCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 34455678999998654332222 1112237777777632 12221111100 111222333333222
Q ss_pred -hhcCEEEEcCHhhHHhhhc----ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHH
Q 012256 180 -IYCHKVIRLSAATQEYANS----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 253 (467)
Q Consensus 180 -~~~d~vi~~S~~~~~~~~~----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~ 253 (467)
..+|.++++|+..++...+ ...++ +|+|.+.+.+.. ...+.++|+|++.+.||++.+++++..
T Consensus 151 ~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~-----------~~~~~il~~G~~~~~K~~~~li~a~~~ 219 (351)
T cd03804 151 AARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE-----------EKEDYYLSVGRLVPYKRIDLAIEAFNK 219 (351)
T ss_pred hcCCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC-----------CCCCEEEEEEcCccccChHHHHHHHHH
Confidence 2389999999876644332 22223 688766655432 124469999999999999999999987
Q ss_pred HHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEe
Q 012256 254 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 331 (467)
Q Consensus 254 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t 331 (467)
+ + ++|+|+|+|++.+.+++ ....+|+|+|.+++.+ ++|+.||++++||. |++|++++||||||+|||++
T Consensus 220 ~----~-~~l~ivG~g~~~~~l~~---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~ 290 (351)
T cd03804 220 L----G-KRLVVIGDGPELDRLRA---KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAY 290 (351)
T ss_pred C----C-CcEEEEECChhHHHHHh---hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEe
Confidence 5 3 78999999998777776 3445899999999887 99999999999999 99999999999999999999
Q ss_pred CCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCCccH---HHHHcCCHHHHHHHH
Q 012256 332 NHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALPTE---AQRHQLSWESATERF 386 (467)
Q Consensus 332 ~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~~~~---~~~~~~sw~~~~~~~ 386 (467)
+.|+ .|++.++.+|++++ |+++++++|..+++++.. +.+ +..+.|+|++..+++
T Consensus 291 ~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 291 GKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDF-DPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred CCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCccc-CHHHHHHHHHhcCHHHHHHHh
Confidence 9965 68999989999886 899999999999998742 222 223679999998875
No 62
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.96 E-value=2.1e-27 Score=232.09 Aligned_cols=245 Identities=15% Similarity=0.140 Sum_probs=177.6
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhcc-CCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTK-FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++.+||+||++.. ...+. ...+..+ ..|++..+|+........... .. ..... ....+|.+
T Consensus 71 ~~~~~~~~~~~~dii~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~-~~~~~--~~~~~d~i 139 (353)
T cd03811 71 LRLRRLLRKEKPDVVISHLT-TTPNV--LALLAARLGTKLIVWEHNSLSLELKRKLR-----LL-LLIRK--LYRRADKI 139 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCc-cchhH--HHHHHhhcCCceEEEEcCcchhhhccchh-----HH-HHHHh--hccccceE
Confidence 45677778889999999876 22222 1112211 248999999877654421111 00 11111 12236999
Q ss_pred EEcCHhhHHhhh-------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 186 IRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 186 i~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
+++|+...+... .++..+ +|++...+.+...... ......++..++|+|++.+.||++.+++++..+.++
T Consensus 140 i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~ 217 (353)
T cd03811 140 VAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL--ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKE 217 (353)
T ss_pred EEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh--hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhc
Confidence 999976554332 233333 7998777655433221 112344567899999999999999999999999887
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
.++++|+++|+++..+.+++.+++++. ++.+.|.+++..++|+.||++++||..|++|++++|||+||+|||+|+.|+
T Consensus 218 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~ 297 (353)
T cd03811 218 GPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPG 297 (353)
T ss_pred CCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCC
Confidence 789999999999998888888887765 678889887766999999999999999999999999999999999999976
Q ss_pred -ccccccCCCEEeeC--CHHHHH---HHHHHHHhc
Q 012256 336 -NDFFKQFPNCRTYD--DRNGFV---EATLKALAE 364 (467)
Q Consensus 336 -~e~v~~~~~g~~~~--~~~~l~---~~i~~~l~~ 364 (467)
.|++.++.+|++++ ++++++ +++..+.++
T Consensus 298 ~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 298 PREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred hHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 58999999999987 888884 444444443
No 63
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.95 E-value=1.3e-26 Score=230.58 Aligned_cols=257 Identities=18% Similarity=0.183 Sum_probs=185.2
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHH
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 194 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 194 (467)
..++|+++++.+....+. ..... ...+.+.++|+.............++... +.+..... .+|.+|++|+...+
T Consensus 97 ~~~~diii~~~~~~~~~~--~~~~~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~d~ii~~s~~~~~ 170 (372)
T cd04949 97 DTKPDVFILDRPTLDGQA--LLNMK-KAAKVVVVLHSNHVSDNNDPVHSLINNFY-EYVFENLD--KVDGVIVATEQQKQ 170 (372)
T ss_pred CCCCCEEEECCccccchh--HHhcc-CCceEEEEEChHHhCCcccccccccchhh-HHHHhChh--hCCEEEEccHHHHH
Confidence 478999999877665542 11111 12257788886543222110011111111 11111112 25999999976543
Q ss_pred hhhc------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEe
Q 012256 195 YANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYG 267 (467)
Q Consensus 195 ~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G 267 (467)
.... .+..+ +|++...+.+... .......++|+||+.++||++.+++++..+.++.|+++|+|+|
T Consensus 171 ~l~~~~~~~~~v~~ip~g~~~~~~~~~~~--------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G 242 (372)
T cd04949 171 DLQKQFGNYNPIYTIPVGSIDPLKLPAQF--------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYG 242 (372)
T ss_pred HHHHHhCCCCceEEEcccccChhhcccch--------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3221 13233 6887665554320 1122457999999999999999999999999889999999999
Q ss_pred cCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC-C-ccccccCC
Q 012256 268 NGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP-S-NDFFKQFP 343 (467)
Q Consensus 268 ~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g-~-~e~v~~~~ 343 (467)
.|++...+++..++.++ ++.+.|..++..++|+.||++|+||..|++|++++||||||+|||+++.+ + .+++.++.
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~ 322 (372)
T cd04949 243 YGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGE 322 (372)
T ss_pred eCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCC
Confidence 99988888887777665 67788876666699999999999999999999999999999999999984 4 68999999
Q ss_pred CEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHH
Q 012256 344 NCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATER 385 (467)
Q Consensus 344 ~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~ 385 (467)
+|++++ |+++++++|..+++++.. .++.+++ ++|||++++++
T Consensus 323 ~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~ 371 (372)
T cd04949 323 NGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEK 371 (372)
T ss_pred CceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 999998 999999999999998654 4554443 78999999876
No 64
>PHA01633 putative glycosyl transferase group 1
Probab=99.95 E-value=1.1e-25 Score=215.79 Aligned_cols=241 Identities=15% Similarity=0.115 Sum_probs=165.4
Q ss_pred CCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhh-hccc---
Q 012256 125 EPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYA-NSII--- 200 (467)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~-~~~i--- 200 (467)
.|+.++-+.....+++..++.+.++|+.+. . ..+.+++.+- +.+|++|+.+.+.. +.++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~tt~~g~~~--~---------~~y~~~m~~~------~~vIavS~~t~~~L~~~G~~~~ 115 (335)
T PHA01633 53 HPPSLNPYLYAYYQFKGKKYFYTTCDGIPN--I---------EIVNKYLLQD------VKFIPNSKFSAENLQEVGLQVD 115 (335)
T ss_pred CCcccchHHhhhhhhcCCCceEEeeCCcCc--h---------HHHHHHHhcC------CEEEeCCHHHHHHHHHhCCCCc
Confidence 344444332223345445689999998763 1 1222333332 78999997766433 3222
Q ss_pred -ccccccCCCccccchhh-HHHhhcCC--CCCCceEEEEeccccccCHHHHHHHHHHHHhhcCC----eEEEEEecCCCH
Q 012256 201 -CNVHGVNPKFLEIGKKK-KEQQQNGT--HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNGEDF 272 (467)
Q Consensus 201 -~~i~gvd~~~~~~~~~~-~~~~~~~~--~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~g~~~ 272 (467)
...+|+|.+.|.+.... ...+.... .++.+.++++||+.++||++.+++|+..+.++.|+ ++++++|.+
T Consensus 116 i~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~--- 192 (335)
T PHA01633 116 LPVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK--- 192 (335)
T ss_pred eeeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH---
Confidence 23489998888764421 22222211 23567899999999999999999999999877765 578888742
Q ss_pred HHHHHHHHhcCCeeEEec---CCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc-cccc------
Q 012256 273 NQIQEAAEKLKIVVRVYP---GRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-DFFK------ 340 (467)
Q Consensus 273 ~~l~~~~~~~~~~v~~~g---~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~------ 340 (467)
.+++. ++..+++|.| .++..+ ++|+.||+||+||..|+||++++||||||+|||+|+.|+. |++.
T Consensus 193 -~~~~l--~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~L 269 (335)
T PHA01633 193 -QFTQL--EVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLL 269 (335)
T ss_pred -HHHHc--CCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCcccee
Confidence 22221 2333788885 445555 9999999999999999999999999999999999999663 5433
Q ss_pred ----------c--CCCEEeeC--CHHHHHHHHHHHHhcCCC-CccH---HHHHcCCHHHHHHHHHH
Q 012256 341 ----------Q--FPNCRTYD--DRNGFVEATLKALAEEPA-LPTE---AQRHQLSWESATERFLQ 388 (467)
Q Consensus 341 ----------~--~~~g~~~~--~~~~l~~~i~~~l~~~~~-~~~~---~~~~~~sw~~~~~~~~~ 388 (467)
+ ...|+.++ |+++++++|..+++.... ..+. +..+.|+|+++.+++++
T Consensus 270 i~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 270 IKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQDREERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 1 22466776 999999999999766433 2232 33489999999999864
No 65
>PHA01630 putative group 1 glycosyl transferase
Probab=99.95 E-value=2.8e-26 Score=222.43 Aligned_cols=196 Identities=16% Similarity=0.141 Sum_probs=150.0
Q ss_pred hcCEEEEcCHhhHHhh-hc------ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHH
Q 012256 181 YCHKVIRLSAATQEYA-NS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLD 252 (467)
Q Consensus 181 ~~d~vi~~S~~~~~~~-~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~ 252 (467)
.+|.++++|+..++.. .. ++.++ ||||.+.|.+.... .....+++++|++.++||++.|++|++
T Consensus 94 ~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~~--------~~~~~vl~~~g~~~~~Kg~d~Li~A~~ 165 (331)
T PHA01630 94 PVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKE--------KPHPCVLAILPHSWDRKGGDIVVKIFH 165 (331)
T ss_pred cCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCccc--------cCCCEEEEEeccccccCCHHHHHHHHH
Confidence 3699999998766433 22 33344 89998887654221 122446677888999999999999999
Q ss_pred HHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEE
Q 012256 253 DHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 330 (467)
Q Consensus 253 ~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~ 330 (467)
.+.++.++++++|+|++.....+. ++. .+.+.+++.+ ++|+.||+||+||..|+||++++||||||+|||+
T Consensus 166 ~l~~~~~~~~llivG~~~~~~~l~------~~~-~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIa 238 (331)
T PHA01630 166 ELQNEGYDFYFLIKSSNMLDPRLF------GLN-GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVV 238 (331)
T ss_pred HHHhhCCCEEEEEEeCcccchhhc------ccc-ceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEE
Confidence 998878899999999765433221 111 1345577766 9999999999999999999999999999999999
Q ss_pred eCCCC-ccccccCCCEEee--------------------C-CHHHHHHHHHHHHhcC--CC--C-ccH---HHHHcCCHH
Q 012256 331 ANHPS-NDFFKQFPNCRTY--------------------D-DRNGFVEATLKALAEE--PA--L-PTE---AQRHQLSWE 380 (467)
Q Consensus 331 t~~g~-~e~v~~~~~g~~~--------------------~-~~~~l~~~i~~~l~~~--~~--~-~~~---~~~~~~sw~ 380 (467)
|+.|+ .|++.++.||+++ + |.+++++++.+++.++ +. . ++. ...++|||+
T Consensus 239 s~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~ 318 (331)
T PHA01630 239 TEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYN 318 (331)
T ss_pred eCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 99976 6899988776654 4 7789999999999874 22 1 122 234899999
Q ss_pred HHHHHHHHHHh
Q 012256 381 SATERFLQVAE 391 (467)
Q Consensus 381 ~~~~~~~~~~~ 391 (467)
+++++++++|+
T Consensus 319 ~ia~k~~~l~~ 329 (331)
T PHA01630 319 AIAKMWEKILE 329 (331)
T ss_pred HHHHHHHHHHh
Confidence 99999999997
No 66
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.90 E-value=9.2e-24 Score=214.30 Aligned_cols=260 Identities=10% Similarity=0.058 Sum_probs=172.0
Q ss_pred CCCEEEecCCccccchhhhhhhhcc--CCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHh-hH
Q 012256 117 VADIAVLEEPEHLTWFHHGKRWKTK--FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQ 193 (467)
Q Consensus 117 ~~DvI~~~~~~~~~~~~~~~~~~~~--~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~ 193 (467)
..|+|+++++..+.... .+.++ ..+++.++|..+|.+.-....+... .+.+.+.. ||.+..-+.. ..
T Consensus 131 ~~d~iwihDyhl~llp~---~lr~~~~~~~i~~f~HipfP~~e~~~~lp~~~-~ll~~~l~------~D~igF~t~~~~~ 200 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQ---MLRERGPDARIGFFLHIPFPSSEIFRCLPWRE-ELLRGLLG------ADLIGFQTERYAR 200 (460)
T ss_pred CCCEEEEeChhhhHHHH---HHHhhCCCCeEEEEEeCCCCChHHHhhCCChH-HHHHHHhc------CCEEEECCHHHHH
Confidence 56999999885544442 22222 2388899998876554322233221 22222211 3655555422 22
Q ss_pred Hhhh----------------------cccccc-cccCCCccccchhhHHH-----hhcCCCCCCceEEEEeccccccCHH
Q 012256 194 EYAN----------------------SIICNV-HGVNPKFLEIGKKKKEQ-----QQNGTHAFAKGAYYIGKMVWSKGYK 245 (467)
Q Consensus 194 ~~~~----------------------~~i~~i-~gvd~~~~~~~~~~~~~-----~~~~~~~~~~~il~vGrl~~~Kg~~ 245 (467)
.+.. .++..+ +|||++.|.+....... ......+++++|+++||+++.||++
T Consensus 201 ~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~ 280 (460)
T cd03788 201 NFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIP 280 (460)
T ss_pred HHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHH
Confidence 2211 112233 79998888653222111 1112234577999999999999999
Q ss_pred HHHHHHHHHHhhcCC----eEEEEEecC-----CCHHHHHH----HHHhcC--------CeeEEe-cCCCCHH--HHHHh
Q 012256 246 ELLELLDDHQKELAG----LEVDLYGNG-----EDFNQIQE----AAEKLK--------IVVRVY-PGRDHAD--LIFHD 301 (467)
Q Consensus 246 ~li~a~~~l~~~~~~----~~l~i~G~g-----~~~~~l~~----~~~~~~--------~~v~~~-g~~~~~~--~~~~~ 301 (467)
.+++|++.+.+++|+ ++|+++|.+ ++..++++ ++.+.+ ..+.++ |.++..+ ++|+.
T Consensus 281 ~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~ 360 (460)
T cd03788 281 ERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRA 360 (460)
T ss_pred HHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHh
Confidence 999999999887776 578888643 33333433 333322 135555 6677777 99999
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCe----EEEeCC-CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC---CccH
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKI----VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE 371 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~P----VV~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~ 371 (467)
||+||+||..||+|++++||||||+| ||+|+. |..+. +.+|++++ |+++++++|.+++++++. .+.+
T Consensus 361 aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~ 437 (460)
T cd03788 361 ADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRERHR 437 (460)
T ss_pred ccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999 999988 44555 35788887 999999999999998754 2222
Q ss_pred H---HHHcCCHHHHHHHHHHH
Q 012256 372 A---QRHQLSWESATERFLQV 389 (467)
Q Consensus 372 ~---~~~~~sw~~~~~~~~~~ 389 (467)
+ ...+|||+..++++++.
T Consensus 438 ~~~~~v~~~~~~~w~~~~l~~ 458 (460)
T cd03788 438 KLREYVRTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHhCCHHHHHHHHHHh
Confidence 2 22789999999998864
No 67
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.89 E-value=1.3e-22 Score=179.22 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=128.8
Q ss_pred CCCCCCceEEEEeccccccCHHHHHHHHHHHHhh-cCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HH
Q 012256 224 GTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LI 298 (467)
Q Consensus 224 ~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~ 298 (467)
....++++|+|+|++.+.||++.+++++..+.++ .+++.++|+|+++....+...++..++ ++.++|.+++.+ ++
T Consensus 10 ~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 89 (172)
T PF00534_consen 10 KIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDEL 89 (172)
T ss_dssp TT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHH
T ss_pred CCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccc
Confidence 3456688999999999999999999999999864 789999999988888888888887776 788999998555 99
Q ss_pred HHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHH
Q 012256 299 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ 373 (467)
Q Consensus 299 ~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~ 373 (467)
|+.||++|+||..|++|++++|||+||+|||+++.|+ .+++.++.+|++++ |+++++++|.+++++++. .|++++
T Consensus 90 ~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~ 169 (172)
T PF00534_consen 90 YKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKNA 169 (172)
T ss_dssp HHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999976 59999999999998 899999999999998743 344444
No 68
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=1.1e-21 Score=195.74 Aligned_cols=257 Identities=14% Similarity=0.097 Sum_probs=164.9
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++++||+||+..|... +.. .+ .....+ |++.++++... . ..|. ...+|++
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~-~~~-~~-~~~~~~ip~~~~~td~~~-------~-----------~~~~-~~~ad~i 151 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIA-VPE-LK-KQTGISIPTYNVLTDFCL-------H-----------KIWV-HREVDRY 151 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHH-HHH-HH-HhcCCCCCeEEEeCCCCC-------C-----------cccc-cCCCCEE
Confidence 46778888999999999766432 221 11 122223 66654433211 0 0011 1136999
Q ss_pred EEcCHhhHHhh-hcccc----cccccCCC-ccccchhhHHHh-hcCCCCCCc-eEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 186 IRLSAATQEYA-NSIIC----NVHGVNPK-FLEIGKKKKEQQ-QNGTHAFAK-GAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 186 i~~S~~~~~~~-~~~i~----~i~gvd~~-~~~~~~~~~~~~-~~~~~~~~~-~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
+++|+...+.. +.++. .+.|++.. .|.........+ .....++++ ++++.|++...||+..+++++..
T Consensus 152 ~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~---- 227 (380)
T PRK13609 152 FVATDHVKKVLVDIGVPPEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMS---- 227 (380)
T ss_pred EECCHHHHHHHHHcCCChhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhh----
Confidence 99997766443 22221 12355532 232211111122 222233334 55566888888999999998753
Q ss_pred cCCeEEEEEec-C-CCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-C
Q 012256 258 LAGLEVDLYGN-G-EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-P 334 (467)
Q Consensus 258 ~~~~~l~i~G~-g-~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g 334 (467)
.++++++++|+ + +..+.+++.+++.+.+++|+|.+++..++|+.||++|. ++.|++++||||||+|||+++. +
T Consensus 228 ~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~ 303 (380)
T PRK13609 228 VPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILYKPVP 303 (380)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEECCCCC
Confidence 36888887753 3 34567777776666679999998776699999999984 4568999999999999999874 5
Q ss_pred Cc-----cccccCCCEEeeCCHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhcc
Q 012256 335 SN-----DFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 393 (467)
Q Consensus 335 ~~-----e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 393 (467)
+. +++.+...++...|+++++++|.++++++.. .|+++.+ ..++|+.+++.+++.++..
T Consensus 304 g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 304 GQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred CcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhhh
Confidence 42 2444333345455999999999999987654 4555443 5589999999999988743
No 69
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.88 E-value=7.5e-21 Score=174.81 Aligned_cols=222 Identities=18% Similarity=0.139 Sum_probs=159.9
Q ss_pred EEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCCCc
Q 012256 8 IAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTSTF 87 (467)
Q Consensus 8 I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (467)
|+++++.+.|..+|........++.|+++| |+|.|+.. .
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g--------------~~v~v~~~---------~------------------ 39 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRG--------------HEVEVVAL---------L------------------ 39 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcC--------------CeEEEEEe---------c------------------
Confidence 577888888877776655555569999999 77777640 0
Q ss_pred cccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccC-CcEEEEEecchHHHHHhhccchHH
Q 012256 88 DIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQ 166 (467)
Q Consensus 88 ~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~-~~~v~~~h~~~~~~~~~~~~~~~~ 166 (467)
...+.+.+++.+||+||++.+....+.. ..+.+.. .|++..+|+.++........
T Consensus 40 ------------------~~~~~~~~~~~~~D~i~~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~---- 95 (229)
T cd01635 40 ------------------LLLLLRILRGFKPDVVHAHGYYPAPLAL--LLAARLLGIPLVLTVHGVNRSLLEGVPL---- 95 (229)
T ss_pred ------------------hHHHHHHHhhcCCCEEEEcCCCcHHHHH--HHHHhhCCCCEEEEEcCccHhhcccCcH----
Confidence 0012233346789999999877766542 1122233 48999999988765531110
Q ss_pred HHHHHHHHHHhhhhhcCEEEEcCHhhHHhhhcccccccccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHH
Q 012256 167 AFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKE 246 (467)
Q Consensus 167 ~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~ 246 (467)
........ .++.. |+|++.+.||++.
T Consensus 96 ----~~~~~~~~--~~~~~------------------------------------------------~~g~~~~~k~~~~ 121 (229)
T cd01635 96 ----SLLALSIG--LADKV------------------------------------------------FVGRLAPEKGLDD 121 (229)
T ss_pred ----HHHHHHHh--hcceE------------------------------------------------EEEeecccCCHHH
Confidence 11111100 01111 9999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH---HHHHhcCeEEecCCCCCCcHHHHHH
Q 012256 247 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD---LIFHDYKVFLNPSTTDVVCTTTAEA 321 (467)
Q Consensus 247 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~---~~~~~adv~v~ps~~e~~~~~~lEA 321 (467)
+++++..+.++.++++++++|.+++.....+.+...+. ++.+.|.++..+ .+++.||++++||..|++|++++||
T Consensus 122 ~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Ea 201 (229)
T cd01635 122 LIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEA 201 (229)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHH
Confidence 99999999988899999999999887666654444443 788889974444 5666699999999999999999999
Q ss_pred HHcCCeEEEeCCCC-ccccccCCCEEee
Q 012256 322 LAMGKIVVCANHPS-NDFFKQFPNCRTY 348 (467)
Q Consensus 322 ma~G~PVV~t~~g~-~e~v~~~~~g~~~ 348 (467)
|+||+|||+|+.++ .|++.++.+|+++
T Consensus 202 m~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 202 MACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred HhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 99999999999966 5888888889764
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.87 E-value=5e-21 Score=193.82 Aligned_cols=270 Identities=14% Similarity=0.062 Sum_probs=166.8
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
.+.++++.++||++|+.+... |.. .....++.+ |++.+-+.........+ .++....+.... .+|.++
T Consensus 115 ~~~~~l~~~~Pd~v~~~~~~~--~~~-~l~~~~~~~ip~vl~~~~~~~~s~~~~------~~~~~~~r~~~~--~~d~ii 183 (425)
T PRK05749 115 AVRRFLRFWRPKLVIIMETEL--WPN-LIAELKRRGIPLVLANARLSERSFKRY------QKFKRFYRLLFK--NIDLVL 183 (425)
T ss_pred HHHHHHHhhCCCEEEEEecch--hHH-HHHHHHHCCCCEEEEeccCChhhHHHH------HHHHHHHHHHHH--hCCEEE
Confidence 466778889999999865432 321 112223334 77765444332222111 111122222221 259999
Q ss_pred EcCHhhHHhh-hcc----cccccccCCCccccch---hhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhc
Q 012256 187 RLSAATQEYA-NSI----ICNVHGVNPKFLEIGK---KKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 258 (467)
Q Consensus 187 ~~S~~~~~~~-~~~----i~~i~gvd~~~~~~~~---~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~ 258 (467)
++|+...+.. +.+ +.++.+++.+.+.+.. .....+.... +++++++++|+. .|+.+.+++|+..+.++.
T Consensus 184 ~~S~~~~~~l~~~g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~~~-~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~ 260 (425)
T PRK05749 184 AQSEEDAERFLALGAKNEVTVTGNLKFDIEVPPELAARAATLRRQLA-PNRPVWIAASTH--EGEEELVLDAHRALLKQF 260 (425)
T ss_pred ECCHHHHHHHHHcCCCCCcEecccccccCCCChhhHHHHHHHHHHhc-CCCcEEEEeCCC--chHHHHHHHHHHHHHHhC
Confidence 9997766433 222 2222232222222111 1111222222 346678888864 688999999999998778
Q ss_pred CCeEEEEEecCCCH-HHHHHHHHhcCCe-eEEecCC-C-----------CHH--HHHHhcCeE-EecCCCCCCcHHHHHH
Q 012256 259 AGLEVDLYGNGEDF-NQIQEAAEKLKIV-VRVYPGR-D-----------HAD--LIFHDYKVF-LNPSTTDVVCTTTAEA 321 (467)
Q Consensus 259 ~~~~l~i~G~g~~~-~~l~~~~~~~~~~-v~~~g~~-~-----------~~~--~~~~~adv~-v~ps~~e~~~~~~lEA 321 (467)
|+++|+|+|+|+++ +++++.+++.++. +.+.++. + ..+ .+|+.||++ +.+|..|++|.+++||
T Consensus 261 ~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEA 340 (425)
T PRK05749 261 PNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEP 340 (425)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHH
Confidence 99999999999986 7899998888873 3333321 1 123 999999995 4578889999999999
Q ss_pred HHcCCeEEEeCC-CCc-cccccC-CCEEee--CCHHHHHHHHHHHHhcCCC--CccHHHHHcC-CHHHHHHHHHHHHh
Q 012256 322 LAMGKIVVCANH-PSN-DFFKQF-PNCRTY--DDRNGFVEATLKALAEEPA--LPTEAQRHQL-SWESATERFLQVAE 391 (467)
Q Consensus 322 ma~G~PVV~t~~-g~~-e~v~~~-~~g~~~--~~~~~l~~~i~~~l~~~~~--~~~~~~~~~~-sw~~~~~~~~~~~~ 391 (467)
||||+|||+++. +.. ++.... .+|.++ .|+++++++|..++++++. .|++++++.. +....++++++.+.
T Consensus 341 ma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~ 418 (425)
T PRK05749 341 AAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLE 418 (425)
T ss_pred HHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 999999999886 443 444331 234444 4999999999999987654 5666554222 12355666666665
No 71
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.87 E-value=4.8e-21 Score=190.42 Aligned_cols=256 Identities=17% Similarity=0.074 Sum_probs=166.0
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHH
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 194 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 194 (467)
+.+.++++...|....+.. . ....++|..+++.+..+.. .. ....+.....+. .||.|+++|+...+
T Consensus 100 ~~~~~i~~~~~P~~~~~~~----~-~~~~~~Vyd~~D~~~~~~~---~~---~~~~~~e~~~~~--~ad~vi~~S~~l~~ 166 (373)
T cd04950 100 GFGRPILWYYTPYTLPVAA----L-LQASLVVYDCVDDLSAFPG---GP---PELLEAERRLLK--RADLVFTTSPSLYE 166 (373)
T ss_pred CCCCcEEEEeCccHHHHHh----h-cCCCeEEEEcccchhccCC---CC---HHHHHHHHHHHH--hCCEEEECCHHHHH
Confidence 4555666666665554442 1 1223677777765544432 11 111122222222 26999999987765
Q ss_pred hhhc---ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCC
Q 012256 195 YANS---IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE 270 (467)
Q Consensus 195 ~~~~---~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~ 270 (467)
.... ++..+ ||+|.+.|.+..............+++.++|+|++.+.++++.+.++.. ..|+++|+|+|+++
T Consensus 167 ~~~~~~~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ll~~la~----~~p~~~~vliG~~~ 242 (373)
T cd04950 167 AKRRLNPNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLELLEALAK----ARPDWSFVLIGPVD 242 (373)
T ss_pred HHhhCCCCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHHHHHHHHH----HCCCCEEEEECCCc
Confidence 4432 23333 8999888765432211001112234679999999999888776655443 36899999999984
Q ss_pred CHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCC-----CCCcHHHHHHHHcCCeEEEeCCCCccccccCC
Q 012256 271 DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-----DVVCTTTAEALAMGKIVVCANHPSNDFFKQFP 343 (467)
Q Consensus 271 ~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~-----e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~ 343 (467)
......+. .. ..+|+++|.+++.+ .+|+.+|++++|+.. +++|++++||||||+|||+|+.+. ......
T Consensus 243 ~~~~~~~~-~~-~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~--~~~~~~ 318 (373)
T cd04950 243 VSIDPSAL-LR-LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE--VRRYED 318 (373)
T ss_pred CccChhHh-cc-CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH--HHhhcC
Confidence 32222221 11 23899999999888 999999999999753 468999999999999999998754 333333
Q ss_pred CEEeeC-CHHHHHHHHHHHHhcCCCC-ccHH--HHHcCCHHHHHHHHHHHHh
Q 012256 344 NCRTYD-DRNGFVEATLKALAEEPAL-PTEA--QRHQLSWESATERFLQVAE 391 (467)
Q Consensus 344 ~g~~~~-~~~~l~~~i~~~l~~~~~~-~~~~--~~~~~sw~~~~~~~~~~~~ 391 (467)
.+++.. |+++++++|.+++.++... ..+. ..+.+||++.++++++..+
T Consensus 319 ~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~~~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 319 EVVLIADDPEEFVAAIEKALLEDGPARERRRLRLAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred cEEEeCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 455555 8999999999987765442 2122 4578999999999996554
No 72
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.87 E-value=6.7e-21 Score=191.93 Aligned_cols=260 Identities=13% Similarity=0.087 Sum_probs=172.2
Q ss_pred CCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHh-hHHhh
Q 012256 118 ADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQEYA 196 (467)
Q Consensus 118 ~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~~~~ 196 (467)
-|+|++++-..+......+... ...++..+.|..+|..--....+... .+.+.+ ..||.|-.-+.. .+.+.
T Consensus 128 ~d~vwvhDYhl~l~p~~lr~~~-~~~~igfFlHipfP~~e~f~~lp~r~-~il~gl------l~~dligF~t~~~~~~Fl 199 (456)
T TIGR02400 128 GDIVWVHDYHLMLLPAMLRELG-VQNKIGFFLHIPFPSSEIYRTLPWRR-ELLEGL------LAYDLVGFQTYDDARNFL 199 (456)
T ss_pred CCEEEEecchhhHHHHHHHhhC-CCCeEEEEEeCCCCChHHHhhCCcHH-HHHHHH------hcCCEEEECCHHHHHHHH
Confidence 4899998764444432111111 11266778898876544333444222 222222 225877666633 22222
Q ss_pred h-------------------c--ccccc-cccCCCccccchhhH-------HHhhcCCCCCCceEEEEeccccccCHHHH
Q 012256 197 N-------------------S--IICNV-HGVNPKFLEIGKKKK-------EQQQNGTHAFAKGAYYIGKMVWSKGYKEL 247 (467)
Q Consensus 197 ~-------------------~--~i~~i-~gvd~~~~~~~~~~~-------~~~~~~~~~~~~~il~vGrl~~~Kg~~~l 247 (467)
. . .+..+ +|||++.|.+..... ..+... .++++|+++||+++.||++.+
T Consensus 200 ~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~--~~~~vIl~VgRLd~~KGi~~l 277 (456)
T TIGR02400 200 SAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL--KGRKLIIGVDRLDYSKGLPER 277 (456)
T ss_pred HHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc--CCCeEEEEccccccccCHHHH
Confidence 1 0 11122 699988886532211 112222 346799999999999999999
Q ss_pred HHHHHHHHhhcCC----eEEEEEe-----cCCCHHHHHHHHHhc--------CC----eeEEe-cCCCCHH--HHHHhcC
Q 012256 248 LELLDDHQKELAG----LEVDLYG-----NGEDFNQIQEAAEKL--------KI----VVRVY-PGRDHAD--LIFHDYK 303 (467)
Q Consensus 248 i~a~~~l~~~~~~----~~l~i~G-----~g~~~~~l~~~~~~~--------~~----~v~~~-g~~~~~~--~~~~~ad 303 (467)
++|++.+.+++|+ +.++++| ++++...+++.++++ +. .+.++ +.++..+ ++|+.||
T Consensus 278 l~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaD 357 (456)
T TIGR02400 278 LLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAAD 357 (456)
T ss_pred HHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCc
Confidence 9999999877776 4577774 455555666655543 11 24444 5667766 9999999
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCe----EEEeCC-CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCC---ccH--
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKI----VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPAL---PTE-- 371 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~P----VV~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~---~~~-- 371 (467)
+||+||..||+|++++||||||+| ||+|+. |..+.+. +|++++ |+++++++|.++++++... +.+
T Consensus 358 v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~ 434 (456)
T TIGR02400 358 VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTMPLEEREERHRAM 434 (456)
T ss_pred EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999 999998 5566664 688887 9999999999999976542 111
Q ss_pred -HHHHcCCHHHHHHHHHHHH
Q 012256 372 -AQRHQLSWESATERFLQVA 390 (467)
Q Consensus 372 -~~~~~~sw~~~~~~~~~~~ 390 (467)
+...++|+..-++++++..
T Consensus 435 ~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 435 MDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHhhCCHHHHHHHHHHHh
Confidence 2226799999999988754
No 73
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.87 E-value=9.7e-21 Score=188.76 Aligned_cols=259 Identities=12% Similarity=0.009 Sum_probs=164.4
Q ss_pred hhhhccCCCCCCCEEEecCCccccchh-hhhhhhc--cCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhc
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFH-HGKRWKT--KFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYC 182 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~-~~~~~~~--~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (467)
.++.+.+++++||+||++.|....... ....+.+ ..+ |++.++.+...... .++ ...+
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~-------------~w~-----~~~~ 151 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHP-------------TWF-----HKGV 151 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCc-------------ccc-----cCCC
Confidence 457788889999999997655322210 0111221 123 66665543210000 111 1236
Q ss_pred CEEEEcCHhhHHh-hhc-----ccccc-cccCCCccccchhhHHHh-hcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 183 HKVIRLSAATQEY-ANS-----IICNV-HGVNPKFLEIGKKKKEQQ-QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 183 d~vi~~S~~~~~~-~~~-----~i~~i-~gvd~~~~~~~~~~~~~~-~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
|+++++|+...+. .+. ++..+ ++++..+..+.......+ ..+.++++++++++|+....|++..+++++..+
T Consensus 152 d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~ 231 (382)
T PLN02605 152 TRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDS 231 (382)
T ss_pred CEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHh
Confidence 9999999776543 222 23222 355554444322222222 333455678999999998999999999999765
Q ss_pred Hh----hcCCeE-EEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeE
Q 012256 255 QK----ELAGLE-VDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 328 (467)
Q Consensus 255 ~~----~~~~~~-l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PV 328 (467)
.. ..++.+ ++++|+++. .+.+++. ..+.+++|+|.+++..++|+.||++|.++ .|++++||||||+||
T Consensus 232 ~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~--~~~~~v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~Pv 305 (382)
T PLN02605 232 LYDKNLGKPIGQVVVICGRNKKLQSKLESR--DWKIPVKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRGLPI 305 (382)
T ss_pred hccccccCCCceEEEEECCCHHHHHHHHhh--cccCCeEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcCCCE
Confidence 31 135554 677887643 3445443 22346889999987779999999999865 488999999999999
Q ss_pred EEeCC-CC-----ccccccCCCEEeeCCHHHHHHHHHHHHhc-CCC--CccHHHH---HcCCHHHHHHHHHHH
Q 012256 329 VCANH-PS-----NDFFKQFPNCRTYDDRNGFVEATLKALAE-EPA--LPTEAQR---HQLSWESATERFLQV 389 (467)
Q Consensus 329 V~t~~-g~-----~e~v~~~~~g~~~~~~~~l~~~i~~~l~~-~~~--~~~~~~~---~~~sw~~~~~~~~~~ 389 (467)
|+++. ++ .+.+.+...|+...|+++++++|.+++.+ ++. .|+++++ ...+++.+++.+.+.
T Consensus 306 I~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 306 ILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred EEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99995 33 34456566677777999999999999987 333 4555444 345666666666544
No 74
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=1.3e-20 Score=186.39 Aligned_cols=255 Identities=15% Similarity=0.080 Sum_probs=168.2
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
...+.+.+++++||+||++..... +. +....+..+ |++...|...+. . .++++ ...+|+
T Consensus 80 ~~~~~~~ik~~~pDvv~~~~~~~~-~~--~~~~~~~~~~p~v~~~~~~~~~------------~----~~r~~-~~~~d~ 139 (357)
T PRK00726 80 VLQARKILKRFKPDVVVGFGGYVS-GP--GGLAARLLGIPLVIHEQNAVPG------------L----ANKLL-ARFAKK 139 (357)
T ss_pred HHHHHHHHHhcCCCEEEECCCcch-hH--HHHHHHHcCCCEEEEcCCCCcc------------H----HHHHH-HHHhch
Confidence 345677788899999999864322 22 111122223 776554432211 1 12221 123688
Q ss_pred EEEcCHhhH-Hhhhcccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHH-HHHHHHHhhcCCe
Q 012256 185 VIRLSAATQ-EYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELL-ELLDDHQKELAGL 261 (467)
Q Consensus 185 vi~~S~~~~-~~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li-~a~~~l~~~~~~~ 261 (467)
+++.++... +....++..+ ||++...+.+.... ......++.+.++++|+....|++..++ +|+.++.+. + .
T Consensus 140 ii~~~~~~~~~~~~~~i~vi~n~v~~~~~~~~~~~---~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~ 214 (357)
T PRK00726 140 VATAFPGAFPEFFKPKAVVTGNPVREEILALAAPP---ARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-Q 214 (357)
T ss_pred heECchhhhhccCCCCEEEECCCCChHhhcccchh---hhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-E
Confidence 888885432 2223344444 79987665542211 1112223466888999888888876655 899888653 4 5
Q ss_pred EEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC------
Q 012256 262 EVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------ 335 (467)
Q Consensus 262 ~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~------ 335 (467)
.++++|+|+. +.+.+..+ .++++++.|++++..++|+.||+++.+|- +++++|||+||+|||++..++
T Consensus 215 ~~~~~G~g~~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~ 288 (357)
T PRK00726 215 VIHQTGKGDL-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAADDHQ 288 (357)
T ss_pred EEEEcCCCcH-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCCcCcH
Confidence 5788999976 55555555 77778889998666699999999998762 689999999999999987632
Q ss_pred ---ccccccCCCEEeeC--C--HHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHh
Q 012256 336 ---NDFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 391 (467)
Q Consensus 336 ---~e~v~~~~~g~~~~--~--~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 391 (467)
.+.+.+..+|++++ | +++++++|.++++++.. .|+++++ +.++-+.+++.++++.+
T Consensus 289 ~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 289 TANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 14577777898876 5 99999999999998655 4555444 55777777777776543
No 75
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.87 E-value=1.9e-20 Score=187.34 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=76.5
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc-----cccccC-CCE-EeeC--------CHHHHHHHHHHH
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----DFFKQF-PNC-RTYD--------DRNGFVEATLKA 361 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~-----e~v~~~-~~g-~~~~--------~~~~l~~~i~~~ 361 (467)
++|+.||+||+||++|+||++++||||||+|||+|+.++. |.+.++ ..| ++.+ +.++++++|.++
T Consensus 470 E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~ 549 (590)
T cd03793 470 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEF 549 (590)
T ss_pred HHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999553 455444 234 5552 577888888887
Q ss_pred HhcCCC-CccH-----HHHHcCCHHHHHHHHHHHHhccc
Q 012256 362 LAEEPA-LPTE-----AQRHQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 362 l~~~~~-~~~~-----~~~~~~sw~~~~~~~~~~~~~~~ 394 (467)
++.+.. .+.. +..+.|+|++.++.|.++|+++.
T Consensus 550 ~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al 588 (590)
T cd03793 550 CQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLAL 588 (590)
T ss_pred hCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 754322 1111 23378999999999999999875
No 76
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.8e-20 Score=186.72 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=135.0
Q ss_pred CCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcC
Q 012256 228 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYK 303 (467)
Q Consensus 228 ~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~ad 303 (467)
+.|.+.++||+..+||+|.+++++..+.+.. ++++|+|.|+. .+.+..+++.+...+.+..+++..- .+|..+|
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD 370 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGAD 370 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCC
Confidence 5689999999999999999999999998764 89999999833 4557777777776666665555444 9999999
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-cccccc--------CCCEEeeC--CHHHHHHHHHHHHhcCCC-C--c
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--------FPNCRTYD--DRNGFVEATLKALAEEPA-L--P 369 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~--------~~~g~~~~--~~~~l~~~i~~~l~~~~~-~--~ 369 (467)
++++||++|++|++-++||+.|+++|+..+|| .|.+.+ ..+|+++. |+++++.+|.+++.--.. . +
T Consensus 371 ~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w 450 (487)
T COG0297 371 VILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLW 450 (487)
T ss_pred EEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHH
Confidence 99999999999999999999999999999977 476654 47898887 999999999988764333 1 1
Q ss_pred cH---HH-HHcCCHHHHHHHHHHHHhccc
Q 012256 370 TE---AQ-RHQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 370 ~~---~~-~~~~sw~~~~~~~~~~~~~~~ 394 (467)
.. .+ ...|||+..+++|.+.|+...
T Consensus 451 ~~~~~~~m~~d~sw~~sa~~y~~lY~~~~ 479 (487)
T COG0297 451 RKVQPNAMGADFSWDLSAKEYVELYKPLL 479 (487)
T ss_pred HHHHHhhcccccCchhHHHHHHHHHHHHh
Confidence 11 11 168999999999999999655
No 77
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.86 E-value=3e-20 Score=185.62 Aligned_cols=257 Identities=14% Similarity=0.137 Sum_probs=164.8
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++++||+|++..|... +. ..+.....+ |++.+ ++.+ . .+. .| ....+|.+
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~-~~--~l~~~~~~~iP~~~v-~td~---~---~~~-----------~w-~~~~~d~~ 151 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPV-MS--VLTEQFNINIPVATV-MTDY---R---LHK-----------NW-ITPYSTRY 151 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHH-HH--HHHHhcCCCCCEEEE-eCCC---C---ccc-----------cc-ccCCCCEE
Confidence 46778888999999999766532 21 112222234 76543 4432 1 110 11 11237999
Q ss_pred EEcCHhhHHhh-hcccc--c--ccccC--CCccccchhhHHHhhcCCCCCCc-eEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 186 IRLSAATQEYA-NSIIC--N--VHGVN--PKFLEIGKKKKEQQQNGTHAFAK-GAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 186 i~~S~~~~~~~-~~~i~--~--i~gvd--~~~~~~~~~~~~~~~~~~~~~~~-~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
++.|+...+.. +.++. . +.|++ +.+..+............+++++ ++++.|++...||++.+++++. +.
T Consensus 152 ~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~---~~ 228 (391)
T PRK13608 152 YVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDIL---AK 228 (391)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHH---hc
Confidence 99997766443 22221 1 13554 33222221111122222233344 4567899998999999999863 23
Q ss_pred cCCeEEEEE-ecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-C
Q 012256 258 LAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-P 334 (467)
Q Consensus 258 ~~~~~l~i~-G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g 334 (467)
.++++++++ |.++. .+++++.... ..++.|.|++++..++|+.||++|. ++.|+++.||||||+|+|+++. +
T Consensus 229 ~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~~~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~p 303 (391)
T PRK13608 229 SANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLNPAP 303 (391)
T ss_pred CCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEeccchHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCC
Confidence 467888665 44432 3444443322 2378889998766699999999996 3568999999999999999975 5
Q ss_pred Ccc-----ccccCCCEEeeCCHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhcc
Q 012256 335 SND-----FFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 393 (467)
Q Consensus 335 ~~e-----~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 393 (467)
+.| ++.+...|+..+|+++++++|.+++++++. .|+++.+ ..++|+.+++.+++.++..
T Consensus 304 gqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~ 372 (391)
T PRK13608 304 GQELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGHS 372 (391)
T ss_pred CcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhh
Confidence 532 445666777777999999999999987654 5665554 5699999999999988743
No 78
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.85 E-value=4.6e-20 Score=182.01 Aligned_cols=238 Identities=16% Similarity=0.143 Sum_probs=157.5
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++++||+||++.+.. ++. +....+..+ |++...|...+. . .+++ ....+|.+
T Consensus 79 ~~~~~~i~~~~pDvI~~~~~~~-~~~--~~~~a~~~~~p~v~~~~~~~~~------------~----~~~~-~~~~~~~v 138 (350)
T cd03785 79 LQARKILKKFKPDVVVGFGGYV-SGP--VGLAAKLLGIPLVIHEQNAVPG------------L----ANRL-LARFADRV 138 (350)
T ss_pred HHHHHHHHhcCCCEEEECCCCc-chH--HHHHHHHhCCCEEEEcCCCCcc------------H----HHHH-HHHhhCEE
Confidence 3466777889999999976543 222 112232333 766544432211 1 1122 11236999
Q ss_pred EEcCHhhHHh-hhcccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHH-HHHHHHHHHhhcCCeE
Q 012256 186 IRLSAATQEY-ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKE-LLELLDDHQKELAGLE 262 (467)
Q Consensus 186 i~~S~~~~~~-~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~-li~a~~~l~~~~~~~~ 262 (467)
+++|+...+. ...++..+ ||++.+.+.+... ......++++++++++|+....|+... +++++..+.+ +++.
T Consensus 139 i~~s~~~~~~~~~~~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~~ 213 (350)
T cd03785 139 ALSFPETAKYFPKDKAVVTGNPVREEILALDRE---RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRLQ 213 (350)
T ss_pred EEcchhhhhcCCCCcEEEECCCCchHHhhhhhh---HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCeE
Confidence 9999776653 33444444 7888776654321 222223445667888887667777765 4588888863 4555
Q ss_pred -EEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC------
Q 012256 263 -VDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------ 335 (467)
Q Consensus 263 -l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~------ 335 (467)
++++|+| +.+.+++.+++++.++++.|.+.+..++|+.||++|.+|- +++++|||+||+|||+++.++
T Consensus 214 ~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~ 288 (350)
T cd03785 214 VIHQTGKG-DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDHQ 288 (350)
T ss_pred EEEEcCCc-cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCcH
Confidence 4578888 6677888777665588999998555599999999998762 689999999999999987632
Q ss_pred ---ccccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccHHHH
Q 012256 336 ---NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTEAQR 374 (467)
Q Consensus 336 ---~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~~~~ 374 (467)
.+.+.+..+|++++ |+++++++|..++++++. .++.+++
T Consensus 289 ~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 289 TANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAAR 336 (350)
T ss_pred HHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 25666677898876 699999999999976543 3444443
No 79
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.84 E-value=2.1e-20 Score=199.60 Aligned_cols=264 Identities=11% Similarity=0.029 Sum_probs=173.3
Q ss_pred CEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHh-hHHhh-
Q 012256 119 DIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQEYA- 196 (467)
Q Consensus 119 DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~~~~- 196 (467)
|+|++++-..+......+... ...++..+.|.-+|.+--....+.....+...+ .||.|-+-+.. .+.+.
T Consensus 149 d~vWvhDYhL~llp~~lR~~~-~~~~igfFlHiPFPs~e~fr~lp~r~~il~gll-------~aDligF~t~~y~r~Fl~ 220 (797)
T PLN03063 149 DVVWCHDYHLMFLPQYLKEYN-NKMKVGWFLHTPFPSSEIYKTLPSRSELLRAVL-------TADLIGFHTYDFARHFLS 220 (797)
T ss_pred CEEEEecchhhhHHHHHHHhC-CCCcEEEEecCCCCCHHHHhhCCCHHHHHHHHh-------cCCEEEeCCHHHHHHHHH
Confidence 899998854443332111111 122788889998887664444443332222211 12433333322 11111
Q ss_pred ----------------hc----ccccc-cccCCCccccchhhH-------HHhhcCCCCCCceEEEEeccccccCHHHHH
Q 012256 197 ----------------NS----IICNV-HGVNPKFLEIGKKKK-------EQQQNGTHAFAKGAYYIGKMVWSKGYKELL 248 (467)
Q Consensus 197 ----------------~~----~i~~i-~gvd~~~~~~~~~~~-------~~~~~~~~~~~~~il~vGrl~~~Kg~~~li 248 (467)
.. ++..+ +|||+..|.+..... ..+.. ..++++|+++||+++.||++.++
T Consensus 221 ~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~--~~~~~lIl~VgRLd~~KGi~~lL 298 (797)
T PLN03063 221 ACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRF--FAGRKVILGVDRLDMIKGIPQKY 298 (797)
T ss_pred HHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHh--cCCCeEEEEecccccccCHHHHH
Confidence 11 12222 699988775432211 11111 22467999999999999999999
Q ss_pred HHHHHHHhhcCCeE----EEEE-----ecCCCHHHHHHHHHhcC--C----------eeEEe-cCCCCHH--HHHHhcCe
Q 012256 249 ELLDDHQKELAGLE----VDLY-----GNGEDFNQIQEAAEKLK--I----------VVRVY-PGRDHAD--LIFHDYKV 304 (467)
Q Consensus 249 ~a~~~l~~~~~~~~----l~i~-----G~g~~~~~l~~~~~~~~--~----------~v~~~-g~~~~~~--~~~~~adv 304 (467)
+|++.+.+.+|+++ |+.+ |++++.+++++.++++. + .++++ +.++..+ ++|+.||+
T Consensus 299 ~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADv 378 (797)
T PLN03063 299 LAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDV 378 (797)
T ss_pred HHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCE
Confidence 99999988888763 3333 34555666666666553 2 23333 4566677 99999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCe----EEEeCC-CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCC---ccH---
Q 012256 305 FLNPSTTDVVCTTTAEALAMGKI----VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPAL---PTE--- 371 (467)
Q Consensus 305 ~v~ps~~e~~~~~~lEAma~G~P----VV~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~---~~~--- 371 (467)
||+||..||+|++++||||||+| +|.|+. |..+.+ +.+|++++ |+++++++|.++++.++.. +.+
T Consensus 379 fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~ 456 (797)
T PLN03063 379 MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNF 456 (797)
T ss_pred EEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999 999999 545665 34688887 9999999999999965541 111
Q ss_pred HHHHcCCHHHHHHHHHHHHhccc
Q 012256 372 AQRHQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 372 ~~~~~~sw~~~~~~~~~~~~~~~ 394 (467)
+....++|..-++.+++.++.+.
T Consensus 457 ~~v~~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 457 QYVKTHSAQKWADDFMSELNDII 479 (797)
T ss_pred HhhhhCCHHHHHHHHHHHHHHHh
Confidence 22378999999999999888654
No 80
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.81 E-value=2.7e-18 Score=169.18 Aligned_cols=235 Identities=13% Similarity=0.081 Sum_probs=147.6
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++++||+||++.+....+. ....+..+ |++...+...+ ....+++. ..+|++
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~~~~---~~~~~~~~~p~v~~~~~~~~------------~~~~~~~~-----~~~d~i 139 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVSGPA---GLAAKLLGIPLFHHEQNAVP------------GLTNKLLS-----RFAKKV 139 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccHHH---HHHHHHcCCCEEEECCCCCc------------cHHHHHHH-----HHhCee
Confidence 45677788999999999865432222 11222223 66532221110 11112222 236999
Q ss_pred EEcCHhhHHhhhcccccccccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHH-HHHHHHHHHhhcCCeEEE
Q 012256 186 IRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKE-LLELLDDHQKELAGLEVD 264 (467)
Q Consensus 186 i~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~-li~a~~~l~~~~~~~~l~ 264 (467)
+++|+...++.+. ...-|+++...+.+.... .....+++.++++++|+....|++.. +++++..+.+. +++++
T Consensus 140 i~~~~~~~~~~~~-~~i~n~v~~~~~~~~~~~---~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~ 213 (348)
T TIGR01133 140 LISFPGAKDHFEA-VLVGNPVRQEIRSLPVPR---ERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIV 213 (348)
T ss_pred EECchhHhhcCCc-eEEcCCcCHHHhcccchh---hhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEE
Confidence 9999877655422 222278886655432111 11222345678999998777888765 45888887653 45554
Q ss_pred -EEecCCCHHHHHHHHHhcCCeeEEecCCC-CHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c-----
Q 012256 265 -LYGNGEDFNQIQEAAEKLKIVVRVYPGRD-HADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N----- 336 (467)
Q Consensus 265 -i~G~g~~~~~l~~~~~~~~~~v~~~g~~~-~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~----- 336 (467)
++|++ +.+.+++.++++++... ..... +..++|+.||++|.+| + |++++|||+||+|+|+++.++ .
T Consensus 214 ~~~g~~-~~~~l~~~~~~~~l~~~-v~~~~~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~ 287 (348)
T TIGR01133 214 HQTGKN-DLEKVKNVYQELGIEAI-VTFIDENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAADDQYY 287 (348)
T ss_pred EECCcc-hHHHHHHHHhhCCceEE-ecCcccCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCccchhh
Confidence 44544 44778887877775222 12222 3349999999999875 2 789999999999999998732 1
Q ss_pred --cccccCCCEEeeC--C--HHHHHHHHHHHHhcCCC--CccHHH
Q 012256 337 --DFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQ 373 (467)
Q Consensus 337 --e~v~~~~~g~~~~--~--~~~l~~~i~~~l~~~~~--~~~~~~ 373 (467)
+++.+..+|++++ | +++++++|.++++++.. .|++++
T Consensus 288 ~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 288 NAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred HHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4778888998886 4 99999999999987543 344444
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.78 E-value=2e-18 Score=184.76 Aligned_cols=262 Identities=10% Similarity=0.088 Sum_probs=170.0
Q ss_pred CCEEEecCCccccchhhhhhhhccC--CcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHh-hHH
Q 012256 118 ADIAVLEEPEHLTWFHHGKRWKTKF--RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQE 194 (467)
Q Consensus 118 ~DvI~~~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~~ 194 (467)
-|+|++++-..+.... .+.++. .++..+.|..+|...-....+... .+.+.+. .||.|-.-+.. .+.
T Consensus 134 ~d~vwvhDYhl~l~p~---~lr~~~~~~~igfFlH~pfP~~~~f~~lp~~~-~ll~~ll------~~Dligf~t~~~~r~ 203 (726)
T PRK14501 134 GDVVWVHDYQLMLLPA---MLRERLPDARIGFFLHIPFPSFEVFRLLPWRE-EILEGLL------GADLIGFHTYDYVRH 203 (726)
T ss_pred CCEEEEeCchhhhHHH---HHHhhCCCCcEEEEeeCCCCChHHHhhCCChH-HHHHHHh------cCCeEEeCCHHHHHH
Confidence 3899998765444442 222222 267778899887554333333221 1111111 13544444422 111
Q ss_pred hhh-------------------c--ccccc-cccCCCccccchhhHH-------HhhcCCCCCCceEEEEeccccccCHH
Q 012256 195 YAN-------------------S--IICNV-HGVNPKFLEIGKKKKE-------QQQNGTHAFAKGAYYIGKMVWSKGYK 245 (467)
Q Consensus 195 ~~~-------------------~--~i~~i-~gvd~~~~~~~~~~~~-------~~~~~~~~~~~~il~vGrl~~~Kg~~ 245 (467)
+.. . .+..+ +|||++.|.+...... .+.. ..++++|+++||+++.||+.
T Consensus 204 Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~--~~~~~~il~VgRl~~~Kgi~ 281 (726)
T PRK14501 204 FLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQD--LRGRKIILSIDRLDYTKGIP 281 (726)
T ss_pred HHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHH--cCCCEEEEEecCcccccCHH
Confidence 111 0 12222 6999888865322111 1111 23467999999999999999
Q ss_pred HHHHHHHHHHhhcCC----eEEEEEec----C-CCHHHHHHHHHhc----C--------CeeE-EecCCCCHH--HHHHh
Q 012256 246 ELLELLDDHQKELAG----LEVDLYGN----G-EDFNQIQEAAEKL----K--------IVVR-VYPGRDHAD--LIFHD 301 (467)
Q Consensus 246 ~li~a~~~l~~~~~~----~~l~i~G~----g-~~~~~l~~~~~~~----~--------~~v~-~~g~~~~~~--~~~~~ 301 (467)
.+++|++.+.+.+|+ ++|+++|. + ++..++++.+.++ + ..+. +.|.++..+ ++|+.
T Consensus 282 ~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~ 361 (726)
T PRK14501 282 RRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRA 361 (726)
T ss_pred HHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHh
Confidence 999999999887776 68888873 3 3344444444332 1 1233 447788777 99999
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCC-----eEEEeCCCCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCC----cc
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGK-----IVVCANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPAL----PT 370 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~-----PVV~t~~g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~----~~ 370 (467)
||+|++||..||+|++++||||||+ ||++...|+.+.+. +|++++ |+++++++|.++++++... +.
T Consensus 362 aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~---~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~ 438 (726)
T PRK14501 362 ADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA---EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQ 438 (726)
T ss_pred ccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHHhC---cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999955 66666667764443 378877 9999999999999876431 11
Q ss_pred H--HHHHcCCHHHHHHHHHHHHhccc
Q 012256 371 E--AQRHQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 371 ~--~~~~~~sw~~~~~~~~~~~~~~~ 394 (467)
. +....|||+..++++++.|+.+.
T Consensus 439 ~~~~~v~~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 439 AMQERLRRYDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1 22378999999999999998654
No 82
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.75 E-value=6.8e-16 Score=141.77 Aligned_cols=270 Identities=15% Similarity=0.079 Sum_probs=167.5
Q ss_pred CCCCCCCEEEecCCccccchhhhhhhhccC-C-cEEEEEecch--HHHHHh----hcc---chHHHHHHHHHHHHhhhh-
Q 012256 113 IPDEVADIAVLEEPEHLTWFHHGKRWKTKF-R-YVVGIVHTNY--LEYVKR----EKN---GRLQAFLLKYANSWLVDI- 180 (467)
Q Consensus 113 l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~h~~~--~~~~~~----~~~---~~~~~~~~~~~~~~~~~~- 180 (467)
+-++.||+.+=.--..+.+. ..+.+ + |++..+|-.. .+.+.. ... .+-+-.+++++..+....
T Consensus 146 i~r~~Pdi~IDtMGY~fs~p-----~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G 220 (465)
T KOG1387|consen 146 IIRFPPDIFIDTMGYPFSYP-----IFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAG 220 (465)
T ss_pred HHhCCchheEecCCCcchhH-----HHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 33678998875433333333 22222 3 8999888422 222211 011 111223333333332222
Q ss_pred -hcCEEEEcCHhhHHhhhcccccccccCCCccccchhhHHH-hhcCC-CCCCceEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 181 -YCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQ-QQNGT-HAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 181 -~~d~vi~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~-~~~~~-~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
.+|.+++.|..+++...+--.. .+.....|+-..... ..... ....+.++++|.+.|.|+.. +++.+.....+
T Consensus 221 ~~ad~vm~NssWT~nHI~qiW~~---~~~~iVyPPC~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~ 296 (465)
T KOG1387|consen 221 SKADIVMTNSSWTNNHIKQIWQS---NTCSIVYPPCSTEDLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKN 296 (465)
T ss_pred ccceEEEecchhhHHHHHHHhhc---cceeEEcCCCCHHHHHHHhcccCCcceEEEEEeecCcccccH-HHHHHHHHHhc
Confidence 2888888888776443321111 112222332222221 22222 33456899999999999999 55444333222
Q ss_pred ------cCCeEEEEEecC---CCHH---HHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHH
Q 012256 258 ------LAGLEVDLYGNG---EDFN---QIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEA 321 (467)
Q Consensus 258 ------~~~~~l~i~G~g---~~~~---~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEA 321 (467)
.++++|+|+|+- +|.+ .++..++++++ ++.|.-.+++++ ++|+.|.+.|+.-..|-||+.+.|+
T Consensus 297 ~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEy 376 (465)
T KOG1387|consen 297 EPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEY 376 (465)
T ss_pred CchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHH
Confidence 256899999952 3333 36666777776 678888999999 9999999999999999999999999
Q ss_pred HHcCCeEEEeCCCC--cccccc---CCCEEeeCCHHHHHHHHHHHHhcCCC---CccHHHH---HcCCHHHHHHHHHHHH
Q 012256 322 LAMGKIVVCANHPS--NDFFKQ---FPNCRTYDDRNGFVEATLKALAEEPA---LPTEAQR---HQLSWESATERFLQVA 390 (467)
Q Consensus 322 ma~G~PVV~t~~g~--~e~v~~---~~~g~~~~~~~~l~~~i~~~l~~~~~---~~~~~~~---~~~sw~~~~~~~~~~~ 390 (467)
||+|+-+|+.+.|| .|++.+ ..+|++.++.++.++++.+++....+ .++.++| .+|+=....+.+...+
T Consensus 377 MAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i 456 (465)
T KOG1387|consen 377 MAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDWENPI 456 (465)
T ss_pred HhcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHH
Confidence 99999999988854 387764 36789999999999999999987665 2333333 4555544444444444
Q ss_pred h
Q 012256 391 E 391 (467)
Q Consensus 391 ~ 391 (467)
.
T Consensus 457 ~ 457 (465)
T KOG1387|consen 457 C 457 (465)
T ss_pred H
Confidence 3
No 83
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.75 E-value=8.3e-17 Score=157.36 Aligned_cols=223 Identities=13% Similarity=0.045 Sum_probs=140.9
Q ss_pred ccCCCCCC-CEEEecCCccccc-h-hhh-hhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 111 EVIPDEVA-DIAVLEEPEHLTW-F-HHG-KRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 111 ~~l~~~~~-DvI~~~~~~~~~~-~-~~~-~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
+.+...++ |+||++.|..... + ... ..+.+...|++..+|+.++.... ... ...+.....+. .||.+|
T Consensus 57 ~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~--~~~----~~~~~~~~~~~--~aD~iI 128 (333)
T PRK09814 57 GILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFD--SNY----YLMKEEIDMLN--LADVLI 128 (333)
T ss_pred HHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhcc--ccc----hhhHHHHHHHH--hCCEEE
Confidence 34455666 9999999877652 1 112 23333323899999997765332 111 11222222222 279999
Q ss_pred EcCHhhHHhhhc-ccccccccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEE
Q 012256 187 RLSAATQEYANS-IICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL 265 (467)
Q Consensus 187 ~~S~~~~~~~~~-~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 265 (467)
++|+.+.+...+ ++....-++...|........ . ......+.++|+|++...+++ .+..++++|+|
T Consensus 129 ~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~-~--~~~~~~~~i~yaG~l~k~~~l----------~~~~~~~~l~i 195 (333)
T PRK09814 129 VHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIEL-V--KTPSFQKKINFAGNLEKSPFL----------KNWSQGIKLTV 195 (333)
T ss_pred ECCHHHHHHHHHcCCCcCceEecccccccccccc-c--ccccCCceEEEecChhhchHH----------HhcCCCCeEEE
Confidence 999887765532 221111111112221110000 0 012235589999999844321 11246899999
Q ss_pred EecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCC-----------CCCCcHHHHHHHHcCCeEEEeC
Q 012256 266 YGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-----------TDVVCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 266 ~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~-----------~e~~~~~~lEAma~G~PVV~t~ 332 (467)
+|+|++.. ....+|.|+|.++..+ ++|+. |+.+.+.. .-++|.++.|+||||+|||+++
T Consensus 196 ~G~g~~~~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~ 267 (333)
T PRK09814 196 FGPNPEDL-------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS 267 (333)
T ss_pred ECCCcccc-------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC
Confidence 99998754 2334899999999988 67777 55444321 1368899999999999999999
Q ss_pred CCC-ccccccCCCEEeeCCHHHHHHHHHHHH
Q 012256 333 HPS-NDFFKQFPNCRTYDDRNGFVEATLKAL 362 (467)
Q Consensus 333 ~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l 362 (467)
.++ .+++.++.+|+++++.+++++++..+.
T Consensus 268 ~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~ 298 (333)
T PRK09814 268 KAAIADFIVENGLGFVVDSLEELPEIIDNIT 298 (333)
T ss_pred CccHHHHHHhCCceEEeCCHHHHHHHHHhcC
Confidence 966 599999999999999999999998853
No 84
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.74 E-value=5.7e-17 Score=159.32 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=130.6
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhc-----CCeEEEEEecC-CC---------HHHHHHHHHhcCC---eeEEec
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKEL-----AGLEVDLYGNG-ED---------FNQIQEAAEKLKI---VVRVYP 290 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~-----~~~~l~i~G~g-~~---------~~~l~~~~~~~~~---~v~~~g 290 (467)
.....-+.++.+.||++.+++++..+.... ++.+++++|+. -+ ..++.++++++++ .+.|+.
T Consensus 273 d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~ 352 (495)
T KOG0853|consen 273 DRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLP 352 (495)
T ss_pred ceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEec
Confidence 456778889999999999999999998665 56889999932 11 3457778888866 344556
Q ss_pred CCCCHH--HHHHhc-CeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC-CHH---HHHHHHHHHH
Q 012256 291 GRDHAD--LIFHDY-KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRN---GFVEATLKAL 362 (467)
Q Consensus 291 ~~~~~~--~~~~~a-dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~-~~~---~l~~~i~~~l 362 (467)
...+.+ .+++.+ -+|+.|.. |.||++++||||||+|||+|+.|| .|++.++.+|++++ +.+ .+++++.++.
T Consensus 353 s~~~~~~yrl~adt~~v~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~ 431 (495)
T KOG0853|consen 353 STTRVAKYRLAADTKGVLYQPAN-EHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLR 431 (495)
T ss_pred CCchHHHHHHHHhcceEEecCCC-CCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHh
Confidence 666666 444455 34667776 999999999999999999999966 69999999999999 666 6999999999
Q ss_pred hcCCC--CccHHHH----HcCCHHHHHHHHHHHHhcc
Q 012256 363 AEEPA--LPTEAQR----HQLSWESATERFLQVAELD 393 (467)
Q Consensus 363 ~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~ 393 (467)
.++.. .++++++ +.|||....+|+.++....
T Consensus 432 ~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~ 468 (495)
T KOG0853|consen 432 RDPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKY 468 (495)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhc
Confidence 99776 6666554 5699999999999988843
No 85
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.73 E-value=1.3e-17 Score=140.95 Aligned_cols=130 Identities=23% Similarity=0.278 Sum_probs=94.5
Q ss_pred ceEEEEeccccccCHHHHHH-HHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEec
Q 012256 230 KGAYYIGKMVWSKGYKELLE-LLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 308 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~-a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~p 308 (467)
+.++++|++.+.||++.+++ +++++.++.|+++|.|+|.+++ ++++. . ..+++++|.+++-.++++.||++++|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~--~-~~~v~~~g~~~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL--R-RPNVRFHGFVEELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH--H-HCTEEEE-S-HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh--c-CCCEEEcCCHHHHHHHHHhCCEEEEE
Confidence 57889999999999999999 9999999999999999999877 35544 1 23899999993222999999999999
Q ss_pred CC-CCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeC-CHHHHHHHHHHHHhc
Q 012256 309 ST-TDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAE 364 (467)
Q Consensus 309 s~-~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~ 364 (467)
+. .+++|.+++|||++|+|||+++.+..+++.....|.++. |+++++++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 85 678999999999999999999996556665444555545 999999999999875
No 86
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=2.2e-15 Score=146.68 Aligned_cols=205 Identities=19% Similarity=0.261 Sum_probs=153.5
Q ss_pred cCEEEEcCHhhHHhhhcc-----cccc-cccCCCccccchhhHHHhhcCCCCC-CceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSAATQEYANSI-----ICNV-HGVNPKFLEIGKKKKEQQQNGTHAF-AKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~~~~~~~~~~-----i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~-~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
++.++..+.......... +..+ ++++...+..... ...... ...++++|++.+.||++.+++++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~ 224 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAPARI------GLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKL 224 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecCCcCHHHcCcccc------CCCcccCceEEEEeeccChhcCHHHHHHHHHHh
Confidence 577888886643322211 1111 5666655543200 001111 35899999999999999999999999
Q ss_pred HhhcCCeEEEEEecCCCH-HHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEE
Q 012256 255 QKELAGLEVDLYGNGEDF-NQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 329 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~~-~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV 329 (467)
....+++.++++|.+++. ..+.+...+.+. ++.++|.++..+ .+++.+|++++||..|++|++++||||||+|||
T Consensus 225 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi 304 (381)
T COG0438 225 KKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVI 304 (381)
T ss_pred hhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEE
Confidence 887777999999999873 566666666653 678889888444 889989999999999999999999999999999
Q ss_pred EeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccH----HHHHcCCHHHHHHHHHHHHhc
Q 012256 330 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTE----AQRHQLSWESATERFLQVAEL 392 (467)
Q Consensus 330 ~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~----~~~~~~sw~~~~~~~~~~~~~ 392 (467)
+++.++ .+++.++.+|++++ +.+++++++..++++... .++. .....|+|+..++++.+.+..
T Consensus 305 ~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (381)
T COG0438 305 ASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEE 376 (381)
T ss_pred ECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999965 68888876677666 589999999999988622 2222 222689999999999988874
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.70 E-value=2.8e-16 Score=155.89 Aligned_cols=243 Identities=10% Similarity=0.043 Sum_probs=144.9
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
+..+.+.+++++||+||++......+. +.......+ |++.+-++.. ... ....+.... .+.+....||.
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la--~a~aa~~~~ipv~h~~~g~~--s~~--~~~~~~~~~----~r~~~~~~ad~ 144 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLA--GALAAFYLQIPVGHVEAGLR--TGD--RYSPMPEEI----NRQLTGHIADL 144 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHH--HHHHHHHhCCCEEEEeCCCC--cCC--CCCCCccHH----HHHHHHHHHHh
Confidence 356788888999999999864433332 222333334 7765433321 000 000011111 11111223688
Q ss_pred EEEcCHhhH-Hhhhcc-----cccc-cccCCCcccc-chh-hHHHhhcCCCCCCceEEEEe-cc-ccccCHHHHHHHHHH
Q 012256 185 VIRLSAATQ-EYANSI-----ICNV-HGVNPKFLEI-GKK-KKEQQQNGTHAFAKGAYYIG-KM-VWSKGYKELLELLDD 253 (467)
Q Consensus 185 vi~~S~~~~-~~~~~~-----i~~i-~gvd~~~~~~-~~~-~~~~~~~~~~~~~~~il~vG-rl-~~~Kg~~~li~a~~~ 253 (467)
++++|+... .+.+.+ +.++ |++.+..+.. ... ....+..... .++.+++.+ |. ...||++.+++++.+
T Consensus 145 ~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~ 223 (365)
T TIGR00236 145 HFAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIRE 223 (365)
T ss_pred ccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHH
Confidence 999997655 343333 3333 5542222211 111 1111222222 234566655 43 346899999999999
Q ss_pred HHhhcCCeEEEEEecC-CCH-HHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEE
Q 012256 254 HQKELAGLEVDLYGNG-EDF-NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 329 (467)
Q Consensus 254 l~~~~~~~~l~i~G~g-~~~-~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV 329 (467)
+.++.|++++++.|.+ ++. ..+.+.. ....+++|.+.+.+.+ .+|+.+|+++.+| |..++|||+||+|||
T Consensus 224 l~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI 297 (365)
T TIGR00236 224 IVEEFEDVQIVYPVHLNPVVREPLHKHL-GDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVL 297 (365)
T ss_pred HHHHCCCCEEEEECCCChHHHHHHHHHh-CCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEE
Confidence 8877788999888643 222 2222221 1223788899888777 8999999999887 566899999999999
Q ss_pred EeC-CCCc-cccccCCCEEeeC-CHHHHHHHHHHHHhcCC
Q 012256 330 CAN-HPSN-DFFKQFPNCRTYD-DRNGFVEATLKALAEEP 366 (467)
Q Consensus 330 ~t~-~g~~-e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~ 366 (467)
++. .|+. +.+.++ .+.+++ |++++++++.+++++++
T Consensus 298 ~~~~~~~~~e~~~~g-~~~lv~~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 298 VLRDTTERPETVEAG-TNKLVGTDKENITKAAKRLLTDPD 336 (365)
T ss_pred ECCCCCCChHHHhcC-ceEEeCCCHHHHHHHHHHHHhChH
Confidence 974 4664 666665 455556 99999999999998754
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.67 E-value=1.5e-15 Score=150.63 Aligned_cols=262 Identities=14% Similarity=0.049 Sum_probs=158.5
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+.+++||+||++......+. +....+..+ |++.+.++... +.. .... ......+. ..+|.+
T Consensus 78 ~~l~~~l~~~~pDvV~~~g~~~~~~~--~~~aa~~~~iPvv~~~~g~~s-~~~--~~~~--~~~r~~~~-----~~ad~~ 145 (363)
T cd03786 78 IGLEAVLLEEKPDLVLVLGDTNETLA--AALAAFKLGIPVAHVEAGLRS-FDR--GMPD--EENRHAID-----KLSDLH 145 (363)
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHcCCCEEEEeccccc-CCC--CCCc--hHHHHHHH-----HHhhhc
Confidence 45667778889999999854332232 223333334 87765554221 100 1110 11111122 235889
Q ss_pred EEcCHhhHHhh-hc-----ccccc-ccc-CCCccccchhh-HHH-hhcCCCCCCceEEEEecccc---ccCHHHHHHHHH
Q 012256 186 IRLSAATQEYA-NS-----IICNV-HGV-NPKFLEIGKKK-KEQ-QQNGTHAFAKGAYYIGKMVW---SKGYKELLELLD 252 (467)
Q Consensus 186 i~~S~~~~~~~-~~-----~i~~i-~gv-d~~~~~~~~~~-~~~-~~~~~~~~~~~il~vGrl~~---~Kg~~~li~a~~ 252 (467)
+++|+...+.. +. ++..+ |++ |...+...... ... ......+...++++.|+... .||++.+++++.
T Consensus 146 ~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~ 225 (363)
T cd03786 146 FAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALA 225 (363)
T ss_pred cCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHH
Confidence 99997766443 32 23333 443 32222211111 111 12222333456778888764 799999999999
Q ss_pred HHHhhcCCeEEEEEecCCCHHHHHHHHHhcC---CeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCe
Q 012256 253 DHQKELAGLEVDLYGNGEDFNQIQEAAEKLK---IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 327 (467)
Q Consensus 253 ~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~---~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~P 327 (467)
.+.+. ++.+++.|+++..+.+++.+++++ .+++|.|...+.+ .+|+.||++|.+|. | .+.|||+||+|
T Consensus 226 ~l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~P 298 (363)
T cd03786 226 ELAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVP 298 (363)
T ss_pred HHHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCC
Confidence 88643 677777777777788888877764 3788888776666 88999999999984 3 47999999999
Q ss_pred EEEeCC-CC-ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCCCccHHHHHcCCHHHHHHHHHHH
Q 012256 328 VVCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQV 389 (467)
Q Consensus 328 VV~t~~-g~-~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~ 389 (467)
||+++. +. .+.+.++. +..+. |+++++++|.++++++....... ...|.=.+.++++.+.
T Consensus 299 vI~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~i~~ll~~~~~~~~~~-~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 299 VLNLRDRTERPETVESGT-NVLVGTDPEAILAAIEKLLSDEFAYSLMS-INPYGDGNASERIVEI 361 (363)
T ss_pred EEeeCCCCccchhhheee-EEecCCCHHHHHHHHHHHhcCchhhhcCC-CCCCCCCHHHHHHHHH
Confidence 999986 43 45665543 34444 79999999999998865421111 2334434455555543
No 89
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.66 E-value=5e-15 Score=147.81 Aligned_cols=239 Identities=13% Similarity=0.013 Sum_probs=142.3
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
...+.+.+++++||+||+.....+... .+ ...++.+ |++...+....... .... +++ ...+|.
T Consensus 74 ~~~~~~~l~~~kPdivi~~~~~~~~~~-~a-~~a~~~~ip~i~~~~~~~~~~~--------~~~~----~~~--~~~~d~ 137 (380)
T PRK00025 74 RRRLKRRLLAEPPDVFIGIDAPDFNLR-LE-KKLRKAGIPTIHYVSPSVWAWR--------QGRA----FKI--AKATDH 137 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHH-HH-HHHHHCCCCEEEEeCCchhhcC--------chHH----HHH--HHHHhh
Confidence 345778888999999999653222211 11 1222223 76655443211100 0111 111 122588
Q ss_pred EEEcCHhhHHhhh-ccccc-ccccCC--CccccchhhHHHhhcCCCCCCceE-EEEe-ccccc-cCHHHHHHHHHHHHhh
Q 012256 185 VIRLSAATQEYAN-SIICN-VHGVNP--KFLEIGKKKKEQQQNGTHAFAKGA-YYIG-KMVWS-KGYKELLELLDDHQKE 257 (467)
Q Consensus 185 vi~~S~~~~~~~~-~~i~~-i~gvd~--~~~~~~~~~~~~~~~~~~~~~~~i-l~vG-rl~~~-Kg~~~li~a~~~l~~~ 257 (467)
+++.|+...+... .++.. +.|.+. .................+++.+++ ++.| |.... ++.+.+++++..+.++
T Consensus 138 i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~ 217 (380)
T PRK00025 138 VLALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQR 217 (380)
T ss_pred heeCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999976554433 22221 134332 111111111112222223344554 4445 33333 4578999999999877
Q ss_pred cCCeEEEEEec-CCCHHHHHHHHHhc-CCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeC---
Q 012256 258 LAGLEVDLYGN-GEDFNQIQEAAEKL-KIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN--- 332 (467)
Q Consensus 258 ~~~~~l~i~G~-g~~~~~l~~~~~~~-~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~--- 332 (467)
.|+++++++|. ++..+.+++..++. ++++.+.. .+..++|+.||++|.+| |.+++|||+||+|+|++.
T Consensus 218 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~ 290 (380)
T PRK00025 218 YPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD--GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVS 290 (380)
T ss_pred CCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccC
Confidence 88999999986 55567788877776 66666653 22339999999999998 788899999999999872
Q ss_pred --------------CCC-ccccccCC--CEEeeC--CHHHHHHHHHHHHhcCCC
Q 012256 333 --------------HPS-NDFFKQFP--NCRTYD--DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 333 --------------~g~-~e~v~~~~--~g~~~~--~~~~l~~~i~~~l~~~~~ 367 (467)
.++ .+++.++. .+++.+ |++++++++.++++|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 344 (380)
T PRK00025 291 PLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGAR 344 (380)
T ss_pred HHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHH
Confidence 222 35555543 335554 899999999999998653
No 90
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.63 E-value=2.8e-14 Score=143.25 Aligned_cols=159 Identities=14% Similarity=0.052 Sum_probs=122.5
Q ss_pred cccCCCccccchhh-------HHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCC----eEEEEEecCC--
Q 012256 204 HGVNPKFLEIGKKK-------KEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNGE-- 270 (467)
Q Consensus 204 ~gvd~~~~~~~~~~-------~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~g~-- 270 (467)
.|||++.|...... ...+.... ++++|++++|+++.||+...++|++++.+++|+ +.|+++|...
T Consensus 255 iGID~~~f~~~~~~~~~~~~~~~lr~~~~--~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~ 332 (487)
T TIGR02398 255 VGTDPERIRSALAAASIREMMERIRSELA--GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAAS 332 (487)
T ss_pred CEecHHHHHHHhcCchHHHHHHHHHHHcC--CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcc
Confidence 49998877442211 11222222 477999999999999999999999999888886 6899998642
Q ss_pred ---C----HHHHHHHHHhc-------CC-ee-EEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCC----eE
Q 012256 271 ---D----FNQIQEAAEKL-------KI-VV-RVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK----IV 328 (467)
Q Consensus 271 ---~----~~~l~~~~~~~-------~~-~v-~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~----PV 328 (467)
+ ..++++.+.+. +. .+ .+.+.++..+ .+|+.|||++.||..||++++..|++||+. |+
T Consensus 333 ~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvL 412 (487)
T TIGR02398 333 GMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVL 412 (487)
T ss_pred cchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCE
Confidence 2 33455555443 22 23 3448888888 999999999999999999999999999999 99
Q ss_pred EEeCC-CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC
Q 012256 329 VCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 329 V~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 367 (467)
|.|.. |..+.+. ++++++ |++++|++|.++|+.+..
T Consensus 413 ILSefaGaa~~l~---~AllVNP~d~~~~A~ai~~AL~m~~~ 451 (487)
T TIGR02398 413 VLSEFAGAAVELK---GALLTNPYDPVRMDETIYVALAMPKA 451 (487)
T ss_pred EEeccccchhhcC---CCEEECCCCHHHHHHHHHHHHcCCHH
Confidence 99999 5555553 357777 999999999999998765
No 91
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.3e-13 Score=125.45 Aligned_cols=272 Identities=14% Similarity=0.122 Sum_probs=172.9
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccc--hHHHHHHHHHHHHhhhhhcCEEEEcCHh
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNG--RLQAFLLKYANSWLVDIYCHKVIRLSAA 191 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 191 (467)
-..+|+|.+.+|+.+..+.-...+....+ +.+...|+.........+.+ ...-.+.++.++++.+. +|.-+|+|.+
T Consensus 101 ~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~-a~~nLcVT~A 179 (444)
T KOG2941|consen 101 LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKL-ADYNLCVTKA 179 (444)
T ss_pred ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcc-cccchhhHHH
Confidence 56899999999887765521222211112 67777787544312112221 11124445555553332 8999999998
Q ss_pred hHHhhhcc--c---ccccccCC--------------------Cccccc--hhhH-H----HhhcC------CCCCCceEE
Q 012256 192 TQEYANSI--I---CNVHGVNP--------------------KFLEIG--KKKK-E----QQQNG------THAFAKGAY 233 (467)
Q Consensus 192 ~~~~~~~~--i---~~i~gvd~--------------------~~~~~~--~~~~-~----~~~~~------~~~~~~~il 233 (467)
+++...++ + .+++.-++ ..|... +... + ..+.. .......++
T Consensus 180 Mr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallv 259 (444)
T KOG2941|consen 180 MREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLV 259 (444)
T ss_pred HHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEE
Confidence 88443221 1 11111111 111110 0000 0 00110 112223444
Q ss_pred EEeccccccCHHHHHHHHHHHHh-------hcCCeEEEEEecCCCHHHHHHHHHhcCC-eeEEe-cCCCCHH--HHHHhc
Q 012256 234 YIGKMVWSKGYKELLELLDDHQK-------ELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVY-PGRDHAD--LIFHDY 302 (467)
Q Consensus 234 ~vGrl~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~g~~~~~l~~~~~~~~~-~v~~~-g~~~~~~--~~~~~a 302 (467)
.--..++..++..|++|+....+ ..|.+-++|-|.||.++...+.+++.++ ++.+. .+..-++ .++..|
T Consensus 260 sSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~sa 339 (444)
T KOG2941|consen 260 SSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASA 339 (444)
T ss_pred ecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhcc
Confidence 44458899999999999985421 2478889999999999999999998888 77776 6665555 889999
Q ss_pred CeEEe--cCCC-CCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeCCHHHHHHHHHHHHhcCCCC------ccHH
Q 012256 303 KVFLN--PSTT-DVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPAL------PTEA 372 (467)
Q Consensus 303 dv~v~--ps~~-e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~------~~~~ 372 (467)
|+.|. +|.. =.+||+++....||+||+|-+... .|.+.++.||++++|.+++++.+..++.+-+.. +.++
T Consensus 340 DlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn 419 (444)
T KOG2941|consen 340 DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKN 419 (444)
T ss_pred ccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 87664 4432 358999999999999999999977 599999999999999999999999999976652 2222
Q ss_pred HH--HcCCHHHHHHHHH
Q 012256 373 QR--HQLSWESATERFL 387 (467)
Q Consensus 373 ~~--~~~sw~~~~~~~~ 387 (467)
.+ +.+.|+..-++..
T Consensus 420 ~~e~~e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 420 LREEQELRWDESWERTA 436 (444)
T ss_pred hHHHHhhhHHHHHHHhh
Confidence 22 5677776655543
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.55 E-value=7.1e-14 Score=149.09 Aligned_cols=261 Identities=11% Similarity=0.059 Sum_probs=166.5
Q ss_pred CEEEecCCccccchhhhhhhhccCC--cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHh-hHHh
Q 012256 119 DIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQEY 195 (467)
Q Consensus 119 DvI~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~~~ 195 (467)
|+|++++-..+.... .+.++.. ++-.+.|.-+|..--....+.....+ + .+ ..||.|=+-+.. .+.+
T Consensus 233 D~VWVHDYHL~LlP~---~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r~elL-~---gl---L~aDlIGFqT~~y~rhF 302 (934)
T PLN03064 233 DVVWCHDYHLMFLPK---CLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRSELL-R---SV---LAADLVGFHTYDYARHF 302 (934)
T ss_pred CEEEEecchhhHHHH---HHHHhCCCCcEEEEecCCCCChHHHhhCCcHHHHH-H---HH---hcCCeEEeCCHHHHHHH
Confidence 899998744333332 2222222 67778899887655433444322222 1 11 224644444422 2222
Q ss_pred hh------------c-----c-cccc----cccCCCccccchhhH-------HHhhcCCCCCCceEEEEeccccccCHHH
Q 012256 196 AN------------S-----I-ICNV----HGVNPKFLEIGKKKK-------EQQQNGTHAFAKGAYYIGKMVWSKGYKE 246 (467)
Q Consensus 196 ~~------------~-----~-i~~i----~gvd~~~~~~~~~~~-------~~~~~~~~~~~~~il~vGrl~~~Kg~~~ 246 (467)
.. . + ...+ .|||+..|....... ..+... .++++|+.++|+++.||+..
T Consensus 303 l~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~--~g~kiIlgVDRLD~~KGI~~ 380 (934)
T PLN03064 303 VSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERF--AGRKVMLGVDRLDMIKGIPQ 380 (934)
T ss_pred HHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHh--CCceEEEEeeccccccCHHH
Confidence 11 0 0 1111 488887775421111 112222 24679999999999999999
Q ss_pred HHHHHHHHHhhcCCeE--EEEE-------ecCCCHHHHHHHHH----hc----CC----eeEEe-cCCCCHH--HHHHhc
Q 012256 247 LLELLDDHQKELAGLE--VDLY-------GNGEDFNQIQEAAE----KL----KI----VVRVY-PGRDHAD--LIFHDY 302 (467)
Q Consensus 247 li~a~~~l~~~~~~~~--l~i~-------G~g~~~~~l~~~~~----~~----~~----~v~~~-g~~~~~~--~~~~~a 302 (467)
.++|++.+.+++|+++ ++++ |++++.+.+++.+. +. +. .|.++ -.++..+ .+|+.|
T Consensus 381 kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~A 460 (934)
T PLN03064 381 KILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVT 460 (934)
T ss_pred HHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhC
Confidence 9999999988888864 6666 55666555444432 22 11 24444 4467777 999999
Q ss_pred CeEEecCCCCCCcHHHHHHHHc-----CCeEEEeCC-CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCC---ccH
Q 012256 303 KVFLNPSTTDVVCTTTAEALAM-----GKIVVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPAL---PTE 371 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~-----G~PVV~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~---~~~ 371 (467)
|||+.||..||++++..||||| |.+|+ |.. |..+.+ +.++++++ |.++++++|.++|+.++.. +.+
T Consensus 461 DV~lvTslrDGmNLva~Eyva~~~~~~GvLIL-SEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~ 537 (934)
T PLN03064 461 DVALVTSLRDGMNLVSYEFVACQDSKKGVLIL-SEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMPEEEREKRHR 537 (934)
T ss_pred CEEEeCccccccCchHHHHHHhhcCCCCCeEE-eCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999 45555 777 666666 33478887 9999999999999965542 111
Q ss_pred ---HHHHcCCHHHHHHHHHHHHhccc
Q 012256 372 ---AQRHQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 372 ---~~~~~~sw~~~~~~~~~~~~~~~ 394 (467)
+....+||..-++.+++....+.
T Consensus 538 ~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 538 HNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 12277899999999887776543
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.54 E-value=1.3e-13 Score=140.77 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=128.7
Q ss_pred CceEEEEe--ccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCH---HHHHHHHHhcC--------------------
Q 012256 229 AKGAYYIG--KMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDF---NQIQEAAEKLK-------------------- 283 (467)
Q Consensus 229 ~~~il~vG--rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~---~~l~~~~~~~~-------------------- 283 (467)
...+++++ |+ +.|.++.+|+++.++.++.|+++|.+.|-+.+. ..+++.+++++
T Consensus 319 ~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 33688999 99 999999999999999999999999999977542 44544444431
Q ss_pred -----------CeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCC
Q 012256 284 -----------IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDD 350 (467)
Q Consensus 284 -----------~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~ 350 (467)
..|.|.|.....+ +.|..+.++|.+|..|+|+ +++||++.|+|+| +-|..++|.++.||++++|
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li~d 474 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--NKVETDYVEHNKNGYIIDD 474 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--ecCCceeeEcCCCcEEeCC
Confidence 2556667777444 9999999999999999999 9999999999999 6588999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC--CccH---HHHHcCCHHHHHHHHHHH
Q 012256 351 RNGFVEATLKALAEEPA--LPTE---AQRHQLSWESATERFLQV 389 (467)
Q Consensus 351 ~~~l~~~i~~~l~~~~~--~~~~---~~~~~~sw~~~~~~~~~~ 389 (467)
.++|++++..+|.+... .++. +....||-+++.++..++
T Consensus 475 ~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 475 ISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 99999999999998654 2322 334788888888777654
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.52 E-value=5.9e-13 Score=132.50 Aligned_cols=236 Identities=11% Similarity=0.013 Sum_probs=137.0
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
....+.+++++||+|++...+.+++. .....+..+ |++..+. |+...... ...+.+. .+||++
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~~~~~~~--~a~aa~~~gip~v~~i~---P~~waw~~------~~~r~l~-----~~~d~v 142 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDAPDFNLT--KELKKKDPGIKIIYYIS---PQVWAWRK------WRAKKIE-----KATDFL 142 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccHH--HHHHHhhCCCCEEEEeC---CcHhhcCc------chHHHHH-----HHHhHh
Confidence 35667788999999999775554443 112333334 6663331 22221001 1112222 236989
Q ss_pred EEcCHhhHHhhhc-cccc--c-cccCCCcccc-chhhHHHhhcCCCCCCceEEEEe--cccc-ccCHHHHHHHHHHHHhh
Q 012256 186 IRLSAATQEYANS-IICN--V-HGVNPKFLEI-GKKKKEQQQNGTHAFAKGAYYIG--KMVW-SKGYKELLELLDDHQKE 257 (467)
Q Consensus 186 i~~S~~~~~~~~~-~i~~--i-~gvd~~~~~~-~~~~~~~~~~~~~~~~~~il~vG--rl~~-~Kg~~~li~a~~~l~~~ 257 (467)
++.++...++... ++.. + |++....... ............++++++|+++| |..+ .|++..+++++..+.+.
T Consensus 143 ~~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~ 222 (385)
T TIGR00215 143 LAILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQ 222 (385)
T ss_pred hccCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHh
Confidence 9999776654432 2221 1 4443222211 11111222223344566666553 6666 78999999999999888
Q ss_pred cCCeEEEEEe-cCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-
Q 012256 258 LAGLEVDLYG-NGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH- 333 (467)
Q Consensus 258 ~~~~~l~i~G-~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~- 333 (467)
.|++++++.+ ++...+.+++..+.++. .+.+++. +..++|+.||++|.+| |.+++|||+||+|+|.+..
T Consensus 223 ~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~ 295 (385)
T TIGR00215 223 EPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRM 295 (385)
T ss_pred CCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcC
Confidence 8999887654 55555666666665543 4444533 3337999999999999 7888899999999998843
Q ss_pred CCcc-----------------ccccCCCE--Ee-eC-CHHHHHHHHHHHHhcC
Q 012256 334 PSND-----------------FFKQFPNC--RT-YD-DRNGFVEATLKALAEE 365 (467)
Q Consensus 334 g~~e-----------------~v~~~~~g--~~-~~-~~~~l~~~i~~~l~~~ 365 (467)
.... ++.+.... ++ -+ +++.+++.+.++++|+
T Consensus 296 ~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 296 KPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred CHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 2211 12222111 11 11 6777888888877764
No 95
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.50 E-value=7.7e-12 Score=129.53 Aligned_cols=165 Identities=10% Similarity=0.071 Sum_probs=127.6
Q ss_pred CCCCceEEEEeccccccCHHHHHHHHHHHHh--hc--CCeEEEEEecCCC--------HHHHHHHHHh--cCCeeEEecC
Q 012256 226 HAFAKGAYYIGKMVWSKGYKELLELLDDHQK--EL--AGLEVDLYGNGED--------FNQIQEAAEK--LKIVVRVYPG 291 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~--~~--~~~~l~i~G~g~~--------~~~l~~~~~~--~~~~v~~~g~ 291 (467)
.++.+++++++|+..+||.+++++++..+.+ .. .+++|++.|.+.. .+.+.+.+++ ...++.|+..
T Consensus 386 dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~ 465 (601)
T TIGR02094 386 DPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLEN 465 (601)
T ss_pred CCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 4567899999999999999999999988864 21 3689999998764 3445555655 4447777766
Q ss_pred CCCHH--HHHHhcCeEEe-cCC-CCCCcHHHHHHHHcCCeEEEeCCCCc-cccccCCCEEeeC--------------CHH
Q 012256 292 RDHAD--LIFHDYKVFLN-PST-TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQFPNCRTYD--------------DRN 352 (467)
Q Consensus 292 ~~~~~--~~~~~adv~v~-ps~-~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~~~~g~~~~--------------~~~ 352 (467)
++..- .+++.||++++ ||. +|+.|++-+=||.-|.+.+++-.|.. |.. ++.|||.+. |.+
T Consensus 466 Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~da~ 544 (601)
T TIGR02094 466 YDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLDAE 544 (601)
T ss_pred CCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccccccCCCHH
Confidence 65444 89999999999 999 99999999999999999999999885 544 667998764 678
Q ss_pred HHHHHHHHHH-----hcCCC-------CccHHHH-H---cCCHHHHHHHHHHHHh
Q 012256 353 GFVEATLKAL-----AEEPA-------LPTEAQR-H---QLSWESATERFLQVAE 391 (467)
Q Consensus 353 ~l~~~i~~~l-----~~~~~-------~~~~~~~-~---~~sw~~~~~~~~~~~~ 391 (467)
+|.++|++.+ +++.. .+.+++. . .|||++++++|.+.|=
T Consensus 545 ~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 545 ALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 8999997766 22221 2222333 3 6999999999999874
No 96
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.26 E-value=1e-11 Score=97.22 Aligned_cols=85 Identities=26% Similarity=0.393 Sum_probs=74.0
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeCCHHHHHHHHHHHHhcCCC--CccHHHH----Hc
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQ 376 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~----~~ 376 (467)
++++|+..+++++.++|+||||+|||+++.++ .+++.++..++.++|++++.+++..+++++.. .++++++ ++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999955 58898888899999999999999999998766 4444443 79
Q ss_pred CCHHHHHHHHHH
Q 012256 377 LSWESATERFLQ 388 (467)
Q Consensus 377 ~sw~~~~~~~~~ 388 (467)
|+|+..++++++
T Consensus 81 ~t~~~~~~~il~ 92 (92)
T PF13524_consen 81 HTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHC
Confidence 999999999874
No 97
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.17 E-value=9.7e-10 Score=110.31 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=66.5
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-----cccccc-CCCE-EeeC----CHHHHHHHHHHHHhcC
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNC-RTYD----DRNGFVEATLKALAEE 365 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-----~e~v~~-~~~g-~~~~----~~~~l~~~i~~~l~~~ 365 (467)
+++..||+.|+||++|++|.+.+|+.|+|+|.|+|+..| .+.+.+ ...| .+++ +.++.++.|...+.+-
T Consensus 465 dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f 544 (633)
T PF05693_consen 465 DFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKF 544 (633)
T ss_dssp HHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHH
T ss_pred HHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999944 233332 2334 5555 6777777766665542
Q ss_pred CC----C---ccH---HHHHcCCHHHHHHHHHHHHhcccc
Q 012256 366 PA----L---PTE---AQRHQLSWESATERFLQVAELDQA 395 (467)
Q Consensus 366 ~~----~---~~~---~~~~~~sw~~~~~~~~~~~~~~~~ 395 (467)
.. + +.. .-....+|+.....|.++|+++..
T Consensus 545 ~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 545 CQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp HT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 22 1 111 111789999999999999997663
No 98
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.16 E-value=6.6e-09 Score=109.90 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=121.0
Q ss_pred CCCCceEEEEeccccccCHHHHHHHHHHHHhhc----CCeEEEEEecCCC--------HHHHHHHHH--hcCCeeEEecC
Q 012256 226 HAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL----AGLEVDLYGNGED--------FNQIQEAAE--KLKIVVRVYPG 291 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~--------~~~l~~~~~--~~~~~v~~~g~ 291 (467)
.++.++|.|+.|+..+|+.++++..+..+.+-. .+++|+++|.+.. .+.+.+.++ +...++.|+..
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~ 554 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLED 554 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcC
Confidence 345668999999999999999999988885411 3589999997653 123444444 23336777766
Q ss_pred CCCHH--HHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-cccccCCCEEeeC--------------CHH
Q 012256 292 RDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQFPNCRTYD--------------DRN 352 (467)
Q Consensus 292 ~~~~~--~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~~~~g~~~~--------------~~~ 352 (467)
++-.- .+++.|||+++||+ .|+.|++=+=||.-|.+-+++-.|.- |.. ++.|||.+. |.+
T Consensus 555 Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~~da~ 633 (778)
T cd04299 555 YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDAEEAE 633 (778)
T ss_pred CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcchhhHH
Confidence 65444 89999999999999 99999999999999999999999874 555 788999875 245
Q ss_pred HHHHHHHHHHh----cC-----CC---CccHHH-HH---cCCHHHHHHHHHHHHh
Q 012256 353 GFVEATLKALA----EE-----PA---LPTEAQ-RH---QLSWESATERFLQVAE 391 (467)
Q Consensus 353 ~l~~~i~~~l~----~~-----~~---~~~~~~-~~---~~sw~~~~~~~~~~~~ 391 (467)
+|.+.|++.+. +. +. .+-+++ .. .|||++++++|.+-|=
T Consensus 634 ~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 634 ALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 66666655333 32 11 222222 23 8999999999986655
No 99
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.16 E-value=4.2e-10 Score=112.54 Aligned_cols=125 Identities=11% Similarity=0.266 Sum_probs=104.5
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCC--HHHHHHhcCeE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDH--ADLIFHDYKVF 305 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~--~~~~~~~adv~ 305 (467)
...+++++. +..|++++.+.+..|+++|.| |.+.+ ...+.++ .++ .++.+++++.. .+++|..||++
T Consensus 282 ~~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y-~nvvly~~~~~~~l~~ly~~~dly 351 (438)
T TIGR02919 282 RKQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY-DNVKLYPNITTQKIQELYQTCDIY 351 (438)
T ss_pred cccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc-CCcEEECCcChHHHHHHHHhccEE
Confidence 335777772 999999999999999999999 87766 5677777 666 47777766544 33999999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCeEEEeCC--CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 306 LNPSTTDVVCTTTAEALAMGKIVVCANH--PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 306 v~ps~~e~~~~~~lEAma~G~PVV~t~~--g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
+..|..|++++++.||++.|+|||+.+. |..+++.+ |.+++ ++++|+++|.+++.++.
T Consensus 352 Ldin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 352 LDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLNDPN 413 (438)
T ss_pred EEccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999 45677777 55665 99999999999998864
No 100
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=3e-08 Score=96.69 Aligned_cols=230 Identities=18% Similarity=0.176 Sum_probs=128.8
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
.....+.+++++||+|+........-. .......+ |++....+..+. ...+.+.++ |+.
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs~P~---~~Aa~~~~iPv~ihEqn~~~G------------~ank~~~~~-----a~~ 139 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVSGPV---GIAAKLLGIPVIIHEQNAVPG------------LANKILSKF-----AKK 139 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccHH---HHHHHhCCCCEEEEecCCCcc------------hhHHHhHHh-----hce
Confidence 345667888999999999554333222 11222223 554444333221 223334444 243
Q ss_pred EEEcCHhhHHhhh-cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcC-Ce
Q 012256 185 VIRLSAATQEYAN-SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA-GL 261 (467)
Q Consensus 185 vi~~S~~~~~~~~-~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~-~~ 261 (467)
|.+--........ +++..+ +-|..+++. .... ..+..... ++++|+.+|. ..|...+-+++..+..... ++
T Consensus 140 V~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~-~~~~-~~~~~~~~-~~~~ilV~GG---S~Ga~~ln~~v~~~~~~l~~~~ 213 (357)
T COG0707 140 VASAFPKLEAGVKPENVVVTGIPVRPEFEE-LPAA-EVRKDGRL-DKKTILVTGG---SQGAKALNDLVPEALAKLANRI 213 (357)
T ss_pred eeeccccccccCCCCceEEecCcccHHhhc-cchh-hhhhhccC-CCcEEEEECC---cchhHHHHHHHHHHHHHhhhCe
Confidence 3322222122221 122221 344444444 1111 11122122 4667777764 3333333333333332222 35
Q ss_pred EEEE-EecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CC----
Q 012256 262 EVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS---- 335 (467)
Q Consensus 262 ~l~i-~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~---- 335 (467)
.++. +|... .+++.+...+++. +++.++.++-.++|+.||++|.= +-++|+.|..++|+|+|--.. ++
T Consensus 214 ~v~~~~G~~~-~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLvIsR----aGa~Ti~E~~a~g~P~IliP~p~~~~~~ 287 (357)
T COG0707 214 QVIHQTGKND-LEELKSAYNELGV-VRVLPFIDDMAALLAAADLVISR----AGALTIAELLALGVPAILVPYPPGADGH 287 (357)
T ss_pred EEEEEcCcch-HHHHHHHHhhcCc-EEEeeHHhhHHHHHHhccEEEeC----CcccHHHHHHHhCCCEEEeCCCCCccch
Confidence 5444 44444 5666666666665 88889988888999999999944 457999999999999998887 33
Q ss_pred ---c-cccccCCCEEeeC----CHHHHHHHHHHHHhcCCC
Q 012256 336 ---N-DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 336 ---~-e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~ 367 (467)
+ ..+.+...|.+++ +++.+.+.|.+++.++..
T Consensus 288 Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~ 327 (357)
T COG0707 288 QEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEK 327 (357)
T ss_pred HHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHH
Confidence 1 2566666777776 578999999999887443
No 101
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.93 E-value=8.8e-08 Score=94.20 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=86.3
Q ss_pred CCCCceEEEEec-cccccCHHHH-HHHHHHHHhhcCCeEEE-EEecCCCHHHHHHHHHhcCCeeEEecCC-CCHHHHHHh
Q 012256 226 HAFAKGAYYIGK-MVWSKGYKEL-LELLDDHQKELAGLEVD-LYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHD 301 (467)
Q Consensus 226 ~~~~~~il~vGr-l~~~Kg~~~l-i~a~~~l~~~~~~~~l~-i~G~g~~~~~l~~~~~~~~~~v~~~g~~-~~~~~~~~~ 301 (467)
.+++++++.+|. .. .+.+..+ .+++..+. .+++++ ++|... .+.... ... ++.+.+++ ++-.++|+.
T Consensus 182 ~~~~~~iLv~GGS~G-a~~in~~~~~~l~~l~---~~~~vv~~~G~~~-~~~~~~---~~~-~~~~~~f~~~~m~~~~~~ 252 (352)
T PRK12446 182 SRKKPVITIMGGSLG-AKKINETVREALPELL---LKYQIVHLCGKGN-LDDSLQ---NKE-GYRQFEYVHGELPDILAI 252 (352)
T ss_pred CCCCcEEEEECCccc-hHHHHHHHHHHHHhhc---cCcEEEEEeCCch-HHHHHh---hcC-CcEEecchhhhHHHHHHh
Confidence 344566666654 43 3444333 33444442 235444 455432 222221 112 33455666 345599999
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC-----Cc-----cccccCCCEEeeC----CHHHHHHHHHHHHhcCCC
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP-----SN-----DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g-----~~-----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~ 367 (467)
||++|.- +-++++.|++++|+|.|..... +. +.+.+...+.... +++.+.+++..+++|++.
T Consensus 253 adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~ 328 (352)
T PRK12446 253 TDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEK 328 (352)
T ss_pred CCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHH
Confidence 9999844 4578999999999999988542 21 2555555555443 789999999998876432
Q ss_pred CccHHHHHcCCHHHHHHHHHHHH
Q 012256 368 LPTEAQRHQLSWESATERFLQVA 390 (467)
Q Consensus 368 ~~~~~~~~~~sw~~~~~~~~~~~ 390 (467)
+. .....+...+.++++.+..
T Consensus 329 -~~-~~~~~~~~~~aa~~i~~~i 349 (352)
T PRK12446 329 -YK-TALKKYNGKEAIQTIIDHI 349 (352)
T ss_pred -HH-HHHHHcCCCCHHHHHHHHH
Confidence 22 2334455556666555544
No 102
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.92 E-value=6e-08 Score=92.23 Aligned_cols=262 Identities=10% Similarity=0.076 Sum_probs=146.9
Q ss_pred eEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTS 85 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (467)
||+|.++.. |.+|.|.+..+..+ +.|.++| ++|..+++. .+......++ . .
T Consensus 1 ~i~ir~Da~-~~iG~GHv~Rcl~LA~~l~~~g--------------~~v~f~~~~----~~~~~~~~i~----~-----~ 52 (279)
T TIGR03590 1 KILFRADAS-SEIGLGHVMRCLTLARALHAQG--------------AEVAFACKP----LPGDLIDLLL----S-----A 52 (279)
T ss_pred CEEEEecCC-ccccccHHHHHHHHHHHHHHCC--------------CEEEEEeCC----CCHHHHHHHH----H-----c
Confidence 388888888 77777787777665 9998899 888776552 1122111111 1 1
Q ss_pred CccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchH
Q 012256 86 TFDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRL 165 (467)
Q Consensus 86 ~~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~ 165 (467)
++.+...+.... +......+...+++.+||+|++........+ . ...+...+.+..+-+...
T Consensus 53 g~~v~~~~~~~~----~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~--~-~~~k~~~~~l~~iDD~~~----------- 114 (279)
T TIGR03590 53 GFPVYELPDESS----RYDDALELINLLEEEKFDILIVDHYGLDADW--E-KLIKEFGRKILVIDDLAD----------- 114 (279)
T ss_pred CCeEEEecCCCc----hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHH--H-HHHHHhCCeEEEEecCCC-----------
Confidence 122222222100 0111234667777889999999765322222 1 112122333333322110
Q ss_pred HHHHHHHHHHHhhhhhcCEEEEcCHhhH--Hhh---hcccccccccCCCccccchhhHHHhhcCCCCCCceEEEEecccc
Q 012256 166 QAFLLKYANSWLVDIYCHKVIRLSAATQ--EYA---NSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW 240 (467)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~vi~~S~~~~--~~~---~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~ 240 (467)
....||.++-.+.... .+. ........|.+-..+.+.-...........+.+.++++.|..++
T Consensus 115 ------------~~~~~D~vin~~~~~~~~~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~ 182 (279)
T TIGR03590 115 ------------RPHDCDLLLDQNLGADASDYQGLVPANCRLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADP 182 (279)
T ss_pred ------------CCcCCCEEEeCCCCcCHhHhcccCcCCCeEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCC
Confidence 0113687776653322 111 11112234664222211111100000001112447888898888
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecC-CCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHH
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNG-EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTA 319 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g-~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~l 319 (467)
.+....+++++..+.. ..++ .+++|.+ +..+++++..+..+ ++++++.+++-.++|..||++|.+ .|.++.
T Consensus 183 ~~~~~~~l~~l~~~~~-~~~i-~vv~G~~~~~~~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is~-----~G~T~~ 254 (279)
T TIGR03590 183 DNLTLKLLSALAESQI-NISI-TLVTGSSNPNLDELKKFAKEYP-NIILFIDVENMAELMNEADLAIGA-----AGSTSW 254 (279)
T ss_pred cCHHHHHHHHHhcccc-CceE-EEEECCCCcCHHHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEEC-----CchHHH
Confidence 7767788888876531 1234 3477865 55777888776654 788888888777999999999985 478999
Q ss_pred HHHHcCCeEEEeCCC
Q 012256 320 EALAMGKIVVCANHP 334 (467)
Q Consensus 320 EAma~G~PVV~t~~g 334 (467)
|++++|+|+|+....
T Consensus 255 E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 255 ERCCLGLPSLAICLA 269 (279)
T ss_pred HHHHcCCCEEEEEec
Confidence 999999999988763
No 103
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.83 E-value=3e-07 Score=93.10 Aligned_cols=238 Identities=11% Similarity=0.082 Sum_probs=126.9
Q ss_pred CCCEEEecCCccccchhhhhhhhccC--CcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHh-hH
Q 012256 117 VADIAVLEEPEHLTWFHHGKRWKTKF--RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQ 193 (467)
Q Consensus 117 ~~DvI~~~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~ 193 (467)
.-|+|++++...+.... .+.++. .++..+.|..+|..--....+... ..++.+ ..||.|=.-+.. .+
T Consensus 141 ~~D~VWVhDYhL~llP~---~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~r~----eiL~gl---L~aDlIgFqt~~~~~ 210 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQ---MLRERGPDARIGFFLHIPFPSSEIFRCLPWRE----EILRGL---LGADLIGFQTFEYAR 210 (474)
T ss_dssp TT-EEEEESGGGTTHHH---HHHHTT--SEEEEEE-S----HHHHTTSTTHH----HHHHHH---TTSSEEEESSHHHHH
T ss_pred CCCEEEEeCCcHHHHHH---HHHhhcCCceEeeEEecCCCCHHHHhhCCcHH----HHHHHh---hcCCEEEEecHHHHH
Confidence 45899998765554443 222222 267788899887665444444222 122222 235866666633 22
Q ss_pred Hhhh------------c--cc----c--cc----cccCCCccccch-------hhHHHhhcCCCCCCceEEEEecccccc
Q 012256 194 EYAN------------S--II----C--NV----HGVNPKFLEIGK-------KKKEQQQNGTHAFAKGAYYIGKMVWSK 242 (467)
Q Consensus 194 ~~~~------------~--~i----~--~i----~gvd~~~~~~~~-------~~~~~~~~~~~~~~~~il~vGrl~~~K 242 (467)
.+.. . .+ . .+ -|||++.|.... .....+.... .+.++|+-+.|+++.|
T Consensus 211 nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~-~~~~ii~gvDrld~~k 289 (474)
T PF00982_consen 211 NFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK-GKRKIIVGVDRLDYTK 289 (474)
T ss_dssp HHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT-T-SEEEEEE--B-GGG
T ss_pred HHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC-CCcEEEEEeccchhhc
Confidence 3221 0 00 0 01 288876664211 1111222222 2247899999999999
Q ss_pred CHHHHHHHHHHHHhhcCC----eEEEEEec--CCC-------HHHHHHHHHh----cCC----eeEEe-cCCCCHH--HH
Q 012256 243 GYKELLELLDDHQKELAG----LEVDLYGN--GED-------FNQIQEAAEK----LKI----VVRVY-PGRDHAD--LI 298 (467)
Q Consensus 243 g~~~li~a~~~l~~~~~~----~~l~i~G~--g~~-------~~~l~~~~~~----~~~----~v~~~-g~~~~~~--~~ 298 (467)
|+..=+.|++.+.+++|+ +.|+-++. ..+ ..++++++.+ ++. .|.++ +.++..+ .+
T Consensus 290 Gi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~al 369 (474)
T PF00982_consen 290 GIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLAL 369 (474)
T ss_dssp -HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHH
Confidence 999999999999887765 56666662 111 2334444433 232 35555 6677777 99
Q ss_pred HHhcCeEEecCCCCCCcHHHHHHHHcCCe----EEEeCC-CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC
Q 012256 299 FHDYKVFLNPSTTDVVCTTTAEALAMGKI----VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 299 ~~~adv~v~ps~~e~~~~~~lEAma~G~P----VV~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 367 (467)
|+.||+++.+|..+|..++..|+.||... +|.|.. |..+.+.++ +++++ |.+++|++|.++|+.+++
T Consensus 370 y~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~--al~VNP~d~~~~A~ai~~AL~M~~~ 443 (474)
T PF00982_consen 370 YRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSEA--ALLVNPWDIEEVADAIHEALTMPPE 443 (474)
T ss_dssp HHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS---EEE-TT-HHHHHHHHHHHHT--HH
T ss_pred HHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCCc--cEEECCCChHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999775 777777 666777653 36776 999999999999998654
No 104
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.78 E-value=1.3e-07 Score=94.63 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=118.1
Q ss_pred CCceEEEEeccccccCHHHHHHHHHHHHhhcCC----eEEEEEec-----CCCH----HHHHHHHHhc----CC----ee
Q 012256 228 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN-----GEDF----NQIQEAAEKL----KI----VV 286 (467)
Q Consensus 228 ~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~-----g~~~----~~l~~~~~~~----~~----~v 286 (467)
++++|+-+.|+++.||+..=++|++.+.+++|+ +.|+-+.. .++. .++++.+.+. +. .+
T Consensus 254 ~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv 333 (474)
T PRK10117 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPL 333 (474)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeE
Confidence 467899999999999999999999999888775 55665652 1222 2344444332 21 34
Q ss_pred EEe-cCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCC-----eEEEeCC-CCccccccCCCEEeeC--CHHHHH
Q 012256 287 RVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-----IVVCANH-PSNDFFKQFPNCRTYD--DRNGFV 355 (467)
Q Consensus 287 ~~~-g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~-----PVV~t~~-g~~e~v~~~~~g~~~~--~~~~l~ 355 (467)
+++ ..++..+ .+|+.|||++.+|..+|..++..|+.||-. .+|.|.. |..+.+.+ .++++ |.++++
T Consensus 334 ~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~~---AllVNP~d~~~~A 410 (474)
T PRK10117 334 YYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTS---ALIVNPYDRDEVA 410 (474)
T ss_pred EEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchHHHhCC---CeEECCCCHHHHH
Confidence 544 5567777 999999999999999999999999999965 3788888 66666642 46776 999999
Q ss_pred HHHHHHHhcCCCCccH------HHHHcCCHHHHHHHHHHHHhcc
Q 012256 356 EATLKALAEEPALPTE------AQRHQLSWESATERFLQVAELD 393 (467)
Q Consensus 356 ~~i~~~l~~~~~~~~~------~~~~~~sw~~~~~~~~~~~~~~ 393 (467)
++|.++|+.+..+... .....++-..=++.+++..+..
T Consensus 411 ~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~ 454 (474)
T PRK10117 411 AALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (474)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Confidence 9999999987652211 1124556556567777666543
No 105
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.62 E-value=2.1e-06 Score=86.42 Aligned_cols=122 Identities=17% Similarity=0.024 Sum_probs=81.5
Q ss_pred CCceEEEEecccc---ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCe
Q 012256 228 FAKGAYYIGKMVW---SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKV 304 (467)
Q Consensus 228 ~~~~il~vGrl~~---~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv 304 (467)
..++++..|.... .+-...+++++..+ +.-.++..|...... .....++.+.+++++. .+|..||+
T Consensus 239 ~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~----~~~~i~~~g~~~~~~------~~~~~~v~~~~~~p~~-~ll~~~d~ 307 (401)
T cd03784 239 RPPVYVGFGSMVVRDPEALARLDVEAVATL----GQRAILSLGWGGLGA------EDLPDNVRVVDFVPHD-WLLPRCAA 307 (401)
T ss_pred CCcEEEeCCCCcccCHHHHHHHHHHHHHHc----CCeEEEEccCccccc------cCCCCceEEeCCCCHH-HHhhhhhe
Confidence 3556778888754 23444555555432 222345566544322 2233478888998754 68999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c----cccccCCCEEeeC----CHHHHHHHHHHHHhc
Q 012256 305 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N----DFFKQFPNCRTYD----DRNGFVEATLKALAE 364 (467)
Q Consensus 305 ~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~ 364 (467)
+| +.+-..++.||+++|+|+|...... + +.+.+...|...+ +++++.+++.+++++
T Consensus 308 ~I----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 308 VV----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred ee----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 99 4455689999999999999998843 1 3445555565543 789999999999885
No 106
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.62 E-value=1.2e-06 Score=85.28 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=77.7
Q ss_pred CCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCC-CCHHHHHHhcCeEE
Q 012256 228 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFL 306 (467)
Q Consensus 228 ~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~v 306 (467)
.+.+++++|..... .++++++. .++..++++|..... ....++++.+.. ++-.++|..||++|
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~----~~~~~~~v~g~~~~~--------~~~~ni~~~~~~~~~~~~~m~~ad~vI 255 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKA----LPDYQFIVFGPNAAD--------PRPGNIHVRPFSTPDFAELMAAADLVI 255 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHh----CCCCeEEEEcCCccc--------ccCCCEEEeecChHHHHHHHHhCCEEE
Confidence 35588899987655 55666655 467889999876311 113377777765 44449999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCCCC-cc------ccccCCCEEeeC----CHHHHHHHHHH
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANHPS-ND------FFKQFPNCRTYD----DRNGFVEATLK 360 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e------~v~~~~~g~~~~----~~~~l~~~i~~ 360 (467)
--+ --.++.||+++|+|+|.-...+ .| .+.....|...+ +++.+.+.|++
T Consensus 256 s~~----G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 256 SKG----GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLER 316 (318)
T ss_pred ECC----CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhc
Confidence 653 2245999999999999999843 22 445555565543 77888877765
No 107
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=1.4e-05 Score=77.44 Aligned_cols=239 Identities=13% Similarity=0.070 Sum_probs=144.6
Q ss_pred hhccCCCCCCCEEEecCCc-cccchhhhhhhhccCC-cEEEEEec--chHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 109 ISEVIPDEVADIAVLEEPE-HLTWFHHGKRWKTKFR-YVVGIVHT--NYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 109 l~~~l~~~~~DvI~~~~~~-~~~~~~~~~~~~~~~~-~~v~~~h~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
+.++++..+||+.++.+.. ..+... -.++.+ |.+. +.. ++-.+.+ ...++......+..+ |.
T Consensus 115 v~rFl~~~~P~l~Ii~EtElWPnli~----e~~~~~~p~~L-vNaRLS~rS~~~---y~k~~~~~~~~~~~i------~l 180 (419)
T COG1519 115 VRRFLRKWRPKLLIIMETELWPNLIN----ELKRRGIPLVL-VNARLSDRSFAR---YAKLKFLARLLFKNI------DL 180 (419)
T ss_pred HHHHHHhcCCCEEEEEeccccHHHHH----HHHHcCCCEEE-EeeeechhhhHH---HHHHHHHHHHHHHhc------ce
Confidence 5677778899998875433 222221 122222 4332 222 2212221 111233333344443 99
Q ss_pred EEEcCHh-hHHhhhccccccc-----ccCCCccccch-hhHHHhhcCCCCCCceEEEEeccccccCHHH-HHHHHHHHHh
Q 012256 185 VIRLSAA-TQEYANSIICNVH-----GVNPKFLEIGK-KKKEQQQNGTHAFAKGAYYIGKMVWSKGYKE-LLELLDDHQK 256 (467)
Q Consensus 185 vi~~S~~-~~~~~~~~i~~i~-----gvd~~~~~~~~-~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~-li~a~~~l~~ 256 (467)
|++-|+. .+++..-+...+. ..|.+...... .....+.....+ ++++++.+. ..|=++ ++++...+++
T Consensus 181 i~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~-r~v~iaaST---H~GEeei~l~~~~~l~~ 256 (419)
T COG1519 181 ILAQSEEDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGH-RPVWVAAST---HEGEEEIILDAHQALKK 256 (419)
T ss_pred eeecCHHHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCC-CceEEEecC---CCchHHHHHHHHHHHHh
Confidence 9999965 3455544443331 22211111111 112233333333 778888887 455444 7899999999
Q ss_pred hcCCeEEEEEecCCC-HHHHHHHHHhcCCeeEEe--cCC--CCHH-----------HHHHhcCeEEec-CCCCCCcHHHH
Q 012256 257 ELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVY--PGR--DHAD-----------LIFHDYKVFLNP-STTDVVCTTTA 319 (467)
Q Consensus 257 ~~~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~--g~~--~~~~-----------~~~~~adv~v~p-s~~e~~~~~~l 319 (467)
++||..++++=--|+ ...+++++++.|+.+... |.. .+.+ .+|+.+|+.+.- |+.+--|--++
T Consensus 257 ~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~L 336 (419)
T COG1519 257 QFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPL 336 (419)
T ss_pred hCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChh
Confidence 999998888887777 567889999988866544 311 2211 889999986654 66666778899
Q ss_pred HHHHcCCeEEEeCCCC--cc---ccccCCCEEeeCCHHHHHHHHHHHHhcC
Q 012256 320 EALAMGKIVVCANHPS--ND---FFKQFPNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 320 EAma~G~PVV~t~~g~--~e---~v~~~~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
|+.++|+|||.-..-- .| -+.+.+.|+.++|.+.++.++..+++++
T Consensus 337 Epa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~ 387 (419)
T COG1519 337 EPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADE 387 (419)
T ss_pred hHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcCCH
Confidence 9999999999987732 23 4445556889999777777777777763
No 108
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.54 E-value=2.1e-06 Score=85.82 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=89.5
Q ss_pred eEEEEecc--ccccCHHHHHHHHHHHHhhcCCeEEEEEe-cCCCHHHHHHHHHhcCCe----------------eEEecC
Q 012256 231 GAYYIGKM--VWSKGYKELLELLDDHQKELAGLEVDLYG-NGEDFNQIQEAAEKLKIV----------------VRVYPG 291 (467)
Q Consensus 231 ~il~vGrl--~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~~~----------------v~~~g~ 291 (467)
++++-|.- +..+++..+++++..+.++ +++.+++.- ++.+.+.+++..++.+.. +.+...
T Consensus 208 lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~ 286 (396)
T TIGR03492 208 IALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG 286 (396)
T ss_pred EEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEec
Confidence 44444543 2347888999999999765 777777654 455667777766654432 455555
Q ss_pred CCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc---ccccc-----CCCEEeeC-CHHHHHHHHHHH
Q 012256 292 RDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN---DFFKQ-----FPNCRTYD-DRNGFVEATLKA 361 (467)
Q Consensus 292 ~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~---e~v~~-----~~~g~~~~-~~~~l~~~i~~~ 361 (467)
..+..++|+.||++|..| |.+..|++++|+|+|.... +.. .+... +....+.+ +++.+++++..+
T Consensus 287 ~~~~~~~l~~ADlvI~rS-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~l 361 (396)
T TIGR03492 287 RGAFAEILHWADLGIAMA-----GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQL 361 (396)
T ss_pred hHhHHHHHHhCCEEEECc-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHH
Confidence 444449999999999886 5677999999999999985 331 23232 22234445 889999999999
Q ss_pred HhcCC
Q 012256 362 LAEEP 366 (467)
Q Consensus 362 l~~~~ 366 (467)
++|++
T Consensus 362 l~d~~ 366 (396)
T TIGR03492 362 LADPE 366 (396)
T ss_pred HcCHH
Confidence 98754
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.53 E-value=5.1e-06 Score=89.96 Aligned_cols=236 Identities=9% Similarity=0.034 Sum_probs=147.2
Q ss_pred CEEEecCCccccchhhhhhhhccCC--cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHh-hHHh
Q 012256 119 DIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQEY 195 (467)
Q Consensus 119 DvI~~~~~~~~~~~~~~~~~~~~~~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~~~ 195 (467)
|+|++++-..+.... .+.+++. ++..+.|.-+|..--....+.....+ +.+ ..||.|=.-+.. .+.+
T Consensus 203 d~VWVhDYhL~llP~---~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~eiL----~gl---L~aDlIGFht~~yar~F 272 (854)
T PLN02205 203 DFVWIHDYHLMVLPT---FLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELL----RAL---LNSDLIGFHTFDYARHF 272 (854)
T ss_pred CEEEEeCchhhHHHH---HHHhhCCCCcEEEEecCCCCChHHHhhCCcHHHHH----HHH---hcCCeEEecCHHHHHHH
Confidence 899998765444432 2222222 67778899887655433444222221 111 224655444422 2222
Q ss_pred hh------------c----cc----cc--c----cccCCCccccchh-------hHHHhhcCCCCCCceEEEEecccccc
Q 012256 196 AN------------S----II----CN--V----HGVNPKFLEIGKK-------KKEQQQNGTHAFAKGAYYIGKMVWSK 242 (467)
Q Consensus 196 ~~------------~----~i----~~--i----~gvd~~~~~~~~~-------~~~~~~~~~~~~~~~il~vGrl~~~K 242 (467)
.. . .+ .. + .|||+..|..... ....+......++++|+-+.|++..|
T Consensus 273 l~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ilgVDrlD~~K 352 (854)
T PLN02205 273 LSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCDQDRIMLLGVDDMDIFK 352 (854)
T ss_pred HHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhccCCCEEEEEccCccccc
Confidence 11 0 00 00 1 3888766633111 11122222223477999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCe----EEEEEe-----cCCCHHH----HHHHHHh----cCC----eeEEe-cCCCCHH--HH
Q 012256 243 GYKELLELLDDHQKELAGL----EVDLYG-----NGEDFNQ----IQEAAEK----LKI----VVRVY-PGRDHAD--LI 298 (467)
Q Consensus 243 g~~~li~a~~~l~~~~~~~----~l~i~G-----~g~~~~~----l~~~~~~----~~~----~v~~~-g~~~~~~--~~ 298 (467)
|+..=+.|++++.+++|++ .|+-+. .+++..+ +++.+.+ ++. .|+++ ..++..+ ++
T Consensus 353 Gi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~al 432 (854)
T PLN02205 353 GISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAY 432 (854)
T ss_pred CHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHH
Confidence 9999999999999888875 455554 2333333 3344333 221 35555 5577777 99
Q ss_pred HHhcCeEEecCCCCCCcHHHHHHHHcCC-------------------eEEEeCC-CCccccccCCCEEeeC--CHHHHHH
Q 012256 299 FHDYKVFLNPSTTDVVCTTTAEALAMGK-------------------IVVCANH-PSNDFFKQFPNCRTYD--DRNGFVE 356 (467)
Q Consensus 299 ~~~adv~v~ps~~e~~~~~~lEAma~G~-------------------PVV~t~~-g~~e~v~~~~~g~~~~--~~~~l~~ 356 (467)
|+.||+++.++..+|..++..|+.||.. .+|.|.. |+...+. ..++++ |.+++++
T Consensus 433 y~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d~~~~a~ 509 (854)
T PLN02205 433 YVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNPWNIDAVAD 509 (854)
T ss_pred HHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCeEECCCCHHHHHH
Confidence 9999999999999999999999999864 3667777 6665553 246776 9999999
Q ss_pred HHHHHHhcCCC
Q 012256 357 ATLKALAEEPA 367 (467)
Q Consensus 357 ~i~~~l~~~~~ 367 (467)
+|.++|+.+..
T Consensus 510 ai~~AL~m~~~ 520 (854)
T PLN02205 510 AMDSALEMAEP 520 (854)
T ss_pred HHHHHHcCCHH
Confidence 99999998765
No 110
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.45 E-value=7.8e-05 Score=76.84 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=81.0
Q ss_pred CceEEEEeccccc-----cCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHH--Hh
Q 012256 229 AKGAYYIGKMVWS-----KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF--HD 301 (467)
Q Consensus 229 ~~~il~vGrl~~~-----Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~--~~ 301 (467)
..+++..|..... +-+..+++|++.+ + .++++..+++... .+...++.+.+++++. +++ ..
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l----~-~~viw~~~~~~~~------~~~p~Nv~i~~w~Pq~-~lL~hp~ 364 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL----P-YNVLWKYDGEVEA------INLPANVLTQKWFPQR-AVLKHKN 364 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCCcCc------ccCCCceEEecCCCHH-HHhcCCC
Confidence 3566677776432 2245555555543 3 4666655433211 1344488888998876 477 45
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccCCCEEeeC----CHHHHHHHHHHHHhcC
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQFPNCRTYD----DRNGFVEATLKALAEE 365 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~ 365 (467)
+++|| +.|-..++.||+.+|+|+|+... +.+ .-+...+.|...+ +.+++.++|.++++++
T Consensus 365 v~~fI----tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~ 433 (507)
T PHA03392 365 VKAFV----TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENP 433 (507)
T ss_pred CCEEE----ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCH
Confidence 78898 55667789999999999999998 442 3444555676654 8899999999999874
No 111
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.44 E-value=1.1e-07 Score=83.41 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=51.4
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
...+.+.+++.+||+||++.+....+.. .... ..|.+.++|+.................+...+.... ...+|.+
T Consensus 69 ~~~~~~~i~~~~~DiVh~~~~~~~~~~~---~~~~-~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 143 (177)
T PF13439_consen 69 MRRLRRLIKKEKPDIVHIHGPPAFWIAL---LACR-KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKL-YKKADRI 143 (177)
T ss_dssp HHHHHHHHHHHT-SEEECCTTHCCCHHH---HHHH-CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHH-HCCSSEE
T ss_pred HHHHHHHHHHcCCCeEEecccchhHHHH---Hhcc-CCCEEEEeCCCcccccccccccchhhhhhhhhhhhH-HhcCCEE
Confidence 3456777778899999998866554441 1111 459999999877421100111111122222211111 2237999
Q ss_pred EEcCHhhHHhhh------cccccc-cccCCCccc
Q 012256 186 IRLSAATQEYAN------SIICNV-HGVNPKFLE 212 (467)
Q Consensus 186 i~~S~~~~~~~~------~~i~~i-~gvd~~~~~ 212 (467)
+|+|+.+++... +++.++ ||||++.|.
T Consensus 144 i~vS~~~~~~l~~~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 144 IAVSESTKDELIKFGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp EESSHHHHHHHHHHT--SS-EEE----B-CCCH-
T ss_pred EEECHHHHHHHHHhCCcccCCEEEECCccHHHcC
Confidence 999987664433 334445 799998773
No 112
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=3.7e-05 Score=76.92 Aligned_cols=136 Identities=16% Similarity=0.174 Sum_probs=103.6
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCC----eEEEEEecC--CC-------HHHHHHHHHh----cCC----eeE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNG--ED-------FNQIQEAAEK----LKI----VVR 287 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~g--~~-------~~~l~~~~~~----~~~----~v~ 287 (467)
+++|+-+.|+++.||+..=+.|++++.+.+|. +.++-++.. .+ ..++++.+.+ +|. .|.
T Consensus 282 ~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~ 361 (486)
T COG0380 282 KKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVH 361 (486)
T ss_pred ceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeE
Confidence 77899999999999999999999999987775 556666632 12 1223333332 221 345
Q ss_pred Ee-cCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCC----eEEEeCC-CCccccccCCCEEeeC--CHHHHHHH
Q 012256 288 VY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK----IVVCANH-PSNDFFKQFPNCRTYD--DRNGFVEA 357 (467)
Q Consensus 288 ~~-g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~----PVV~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~ 357 (467)
++ -.++..+ .+|+.||+++.+|..||..++..|+.||-- +.|-|.. |....+.+ .++++ |.++++++
T Consensus 362 ~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~a 438 (486)
T COG0380 362 YLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADA 438 (486)
T ss_pred EEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHH
Confidence 55 3466666 999999999999999999999999999854 7777887 66666665 37777 99999999
Q ss_pred HHHHHhcCCC
Q 012256 358 TLKALAEEPA 367 (467)
Q Consensus 358 i~~~l~~~~~ 367 (467)
|.++|+.+.+
T Consensus 439 i~~AL~m~~e 448 (486)
T COG0380 439 IKRALTMSLE 448 (486)
T ss_pred HHHHhcCCHH
Confidence 9999998765
No 113
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.41 E-value=1.2e-05 Score=79.46 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=68.8
Q ss_pred eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc-cccccCCCEEeeC-CHHHHHHHHHH
Q 012256 285 VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-DFFKQFPNCRTYD-DRNGFVEATLK 360 (467)
Q Consensus 285 ~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~~~~g~~~~-~~~~l~~~i~~ 360 (467)
++++.+.+++.+ .+++.|+++|--|. | .+.||.++|+|+|.-. .+ |.+..+.|.+.+. |++++.+++.+
T Consensus 263 ~v~l~~~l~~~~~l~Ll~~a~~vitdSS----g-gi~EA~~lg~Pvv~l~--~R~e~~~~g~nvl~vg~~~~~I~~a~~~ 335 (365)
T TIGR03568 263 NFRLFKSLGQERYLSLLKNADAVIGNSS----S-GIIEAPSFGVPTINIG--TRQKGRLRADSVIDVDPDKEEIVKAIEK 335 (365)
T ss_pred CEEEECCCChHHHHHHHHhCCEEEEcCh----h-HHHhhhhcCCCEEeec--CCchhhhhcCeEEEeCCCHHHHHHHHHH
Confidence 689999999999 99999999994431 2 3489999999999544 43 7777777888777 99999999999
Q ss_pred HHhcCCC-CccHHHHHcCCHHHHHHHHHHH
Q 012256 361 ALAEEPA-LPTEAQRHQLSWESATERFLQV 389 (467)
Q Consensus 361 ~l~~~~~-~~~~~~~~~~sw~~~~~~~~~~ 389 (467)
+++. .. ..-.....-|...+.++|+.++
T Consensus 336 ~~~~-~~~~~~~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 336 LLDP-AFKKSLKNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred HhCh-HHHHHHhhCCCCCCCChHHHHHHHh
Confidence 5432 11 0000111346666777777654
No 114
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.5e-05 Score=76.93 Aligned_cols=160 Identities=15% Similarity=0.094 Sum_probs=109.2
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC---HHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhc
Q 012256 231 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDY 302 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~a 302 (467)
.++|++-=+..|-...+++..-++.+.-|+-.|++.|.|++ ...+++.+++.|. +.+|.+..++++ +.|..|
T Consensus 430 avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iA 509 (620)
T COG3914 430 AVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIA 509 (620)
T ss_pred eEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchh
Confidence 34555544678888888888888888889999999998766 4558888888887 678889998888 999999
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC---c---ccccc-CCCEEeeCCHHHHHHHHHHHHhcCCC--CccHH-
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS---N---DFFKQ-FPNCRTYDDRNGFVEATLKALAEEPA--LPTEA- 372 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~---~---e~v~~-~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~- 372 (467)
|+++-+ +.-+-..+.+||+-||+|||+-.... + .++.+ |-.-++++|.++..+.-..+=.+... ..+.+
T Consensus 510 DlvLDT-yPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l 588 (620)
T COG3914 510 DLVLDT-YPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAEL 588 (620)
T ss_pred heeeec-ccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHH
Confidence 999866 33455689999999999999754321 1 13332 22225666777776655554333322 11111
Q ss_pred --HH---HcCCHHHHHHHHHHHHh
Q 012256 373 --QR---HQLSWESATERFLQVAE 391 (467)
Q Consensus 373 --~~---~~~sw~~~~~~~~~~~~ 391 (467)
.+ .-|+-+..++++.++|.
T Consensus 589 ~~~r~tspL~d~~~far~le~~y~ 612 (620)
T COG3914 589 KRSRQTSPLFDPKAFARKLETLYW 612 (620)
T ss_pred HhccccCcccCHHHHHHHHHHHHH
Confidence 11 24667777777777775
No 115
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.24 E-value=1e-05 Score=79.24 Aligned_cols=240 Identities=14% Similarity=0.039 Sum_probs=136.3
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCc--EEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRY--VVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
..+.+.+...+||++++-+.+.+++-- ++...++..+ ++.++- |.-.. |+....+.+.+. +|+
T Consensus 72 ~~~~~~~~~~~pd~vIlID~pgFNlrl-ak~lk~~~~~~~viyYI~---PqvWA------Wr~~R~~~i~~~-----~D~ 136 (373)
T PF02684_consen 72 RKLVERIKEEKPDVVILIDYPGFNLRL-AKKLKKRGIPIKVIYYIS---PQVWA------WRPGRAKKIKKY-----VDH 136 (373)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccHHH-HHHHHHhCCCceEEEEEC---Cceee------eCccHHHHHHHH-----Hhh
Confidence 345666778999999998888887762 2233322223 544442 21111 112223333333 488
Q ss_pred EEEcCHhhHHhhhcc-cccc-cccCC-CccccchhhHHHhhcCCCCCCc-eEEEEec-ccc-ccCHHHHHHHHHHHHhhc
Q 012256 185 VIRLSAATQEYANSI-ICNV-HGVNP-KFLEIGKKKKEQQQNGTHAFAK-GAYYIGK-MVW-SKGYKELLELLDDHQKEL 258 (467)
Q Consensus 185 vi~~S~~~~~~~~~~-i~~i-~gvd~-~~~~~~~~~~~~~~~~~~~~~~-~il~vGr-l~~-~Kg~~~li~a~~~l~~~~ 258 (467)
++|+=+.-.++.++. +... .|=+. +...+.......+....+.+++ +.++-|. -.+ .+.+..+++++..+.+++
T Consensus 137 ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~ 216 (373)
T PF02684_consen 137 LLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQR 216 (373)
T ss_pred eeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 888887755555443 2222 12110 0111111112222222223344 4445554 322 467799999999999999
Q ss_pred CCeEEEEEecCCCHHH-HHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc
Q 012256 259 AGLEVDLYGNGEDFNQ-IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN 336 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~-l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~ 336 (467)
|++++++........+ +++.....+.++.+.-...+..+.|+.||+.+..| |++.+|++.+|+|.|..-- ...
T Consensus 217 p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~~l 291 (373)
T PF02684_consen 217 PDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYKVSPL 291 (373)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcCcHH
Confidence 9999998875444333 55555555544443322233348999999999887 8999999999999887765 321
Q ss_pred c-----------------ccccCCCE--EeeC--CHHHHHHHHHHHHhcCC
Q 012256 337 D-----------------FFKQFPNC--RTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 337 e-----------------~v~~~~~g--~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
. ++.+.... ++-+ +++.+++++..+++|..
T Consensus 292 t~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~ 342 (373)
T PF02684_consen 292 TYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPE 342 (373)
T ss_pred HHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHH
Confidence 1 22221110 2222 77888888888777653
No 116
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.21 E-value=0.0001 Score=71.81 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=71.6
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCC-CHHHHHHhcCeEEecC
Q 012256 231 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD-HADLIFHDYKVFLNPS 309 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~-~~~~~~~~adv~v~ps 309 (467)
+++|.|. .+...+++++.. .+++.+++.+...... .+..++.+.+..+ +-.++|..||++|.-+
T Consensus 191 iLv~~g~----~~~~~l~~~l~~----~~~~~~i~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~ 255 (321)
T TIGR00661 191 ILVYIGF----EYRYKILELLGK----IANVKFVCYSYEVAKN-------SYNENVEIRRITTDNFKELIKNAELVITHG 255 (321)
T ss_pred EEEECCc----CCHHHHHHHHHh----CCCeEEEEeCCCCCcc-------ccCCCEEEEECChHHHHHHHHhCCEEEECC
Confidence 4556543 345566776654 3566554433221111 2233778887765 2339999999999765
Q ss_pred CCCCCcHHHHHHHHcCCeEEEeCCCC-cc------ccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 310 TTDVVCTTTAEALAMGKIVVCANHPS-ND------FFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 310 ~~e~~~~~~lEAma~G~PVV~t~~g~-~e------~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
- ..++.||+++|+|+|....++ .| .+.+...|...+ +. ++.+++...++++.
T Consensus 256 G----~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 256 G----FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNMKR 316 (321)
T ss_pred C----hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhcccccc
Confidence 2 247999999999999999843 23 455555676666 44 56666666555543
No 117
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.17 E-value=3e-05 Score=77.57 Aligned_cols=165 Identities=14% Similarity=0.028 Sum_probs=101.0
Q ss_pred CCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCCCCHH--H
Q 012256 224 GTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--L 297 (467)
Q Consensus 224 ~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~~~~~--~ 297 (467)
+.+++. ++|.+-=...|=-+..++++.++.++.|+.+|++...... .+.+++.+++.|+ ++.|.+..+..+ .
T Consensus 280 gLp~d~--vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 280 GLPEDA--VVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp T--SSS--EEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred CCCCCc--eEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 334443 4444433468888999999999999999999988775443 4568888888887 577878776666 7
Q ss_pred HHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c-----ccccc-CCCEEeeCCHHHHHHHHHHHHhcCCC--C
Q 012256 298 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N-----DFFKQ-FPNCRTYDDRNGFVEATLKALAEEPA--L 368 (467)
Q Consensus 298 ~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~-----e~v~~-~~~g~~~~~~~~l~~~i~~~l~~~~~--~ 368 (467)
.|+.+||++-| ..-+-+.+.+||+.+|+|||+-.... . .++.. |-.-++..|.+++.+.-.++-.|++. .
T Consensus 358 ~~~~~DI~LDT-~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~ 436 (468)
T PF13844_consen 358 RYQLADICLDT-FPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRA 436 (468)
T ss_dssp HGGG-SEEE---SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHH
T ss_pred HhhhCCEEeeC-CCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHH
Confidence 78889999987 44566899999999999999987632 1 12222 22226777999999998888887554 2
Q ss_pred ccHHHH------HcCCHHHHHHHHHHHHh
Q 012256 369 PTEAQR------HQLSWESATERFLQVAE 391 (467)
Q Consensus 369 ~~~~~~------~~~sw~~~~~~~~~~~~ 391 (467)
++.+.+ .-|+-...++.+++.|+
T Consensus 437 lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 437 LRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 222211 34777777777777776
No 118
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.16 E-value=2e-05 Score=69.05 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=90.3
Q ss_pred eEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchhHHHHHHHHhhhcCCCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQHETYVRRWLEERTGFTS 85 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (467)
||+|+.+--+|...|+-.+-+..+ .+|+++| ++++|++.....+ ..... ..
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g--------------~~v~Vyc~~~~~~--~~~~~------------y~ 54 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKG--------------IDVTVYCRSDYYP--YKEFE------------YN 54 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCC--------------ceEEEEEccCCCC--CCCcc------------cC
Confidence 799999999999888555555555 9999999 9999987642111 11111 11
Q ss_pred CccccccCCCccccceecc-chhhhhccC---C--CCCCCEEEecCCccccch-hhhhhhhccCCcEEEEEecchHHHHH
Q 012256 86 TFDIRFYPGKFAIDKRSIL-GVGDISEVI---P--DEVADIAVLEEPEHLTWF-HHGKRWKTKFRYVVGIVHTNYLEYVK 158 (467)
Q Consensus 86 ~~~~~~y~~~~~~~~~~~~-~~~~l~~~l---~--~~~~DvI~~~~~~~~~~~-~~~~~~~~~~~~~v~~~h~~~~~~~~ 158 (467)
+..+...|....+....+. ....+...+ + +.+.||+++.....-.++ ...+.+.+.-.+++...|+ .++.+
T Consensus 55 gv~l~~i~~~~~g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DG--lEWkR 132 (185)
T PF09314_consen 55 GVRLVYIPAPKNGSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDG--LEWKR 132 (185)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCc--chhhh
Confidence 1222222221111111211 122233333 2 246789988543311111 1011122111256666666 45554
Q ss_pred hhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhhccc
Q 012256 159 REKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSII 200 (467)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~i 200 (467)
.+.+...+.+++..+++ .-.++|.+|+.|+..+++.++..
T Consensus 133 -~KW~~~~k~~lk~~E~~-avk~ad~lIaDs~~I~~y~~~~y 172 (185)
T PF09314_consen 133 -AKWGRPAKKYLKFSEKL-AVKYADRLIADSKGIQDYIKERY 172 (185)
T ss_pred -hhcCHHHHHHHHHHHHH-HHHhCCEEEEcCHHHHHHHHHHc
Confidence 46777777777777776 44559999999999888776544
No 119
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.06 E-value=3.2e-05 Score=75.80 Aligned_cols=239 Identities=13% Similarity=0.067 Sum_probs=128.4
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+...+.+.+||+|++..-..-.+. +.......+ |++ -+++-.-.+- ...+..-+..+..+.++ +|..
T Consensus 57 ~~~~~~~~~~~Pd~Vlv~GD~~~~la--~alaA~~~~ipv~-HieaGlRs~d--~~~g~~de~~R~~i~~l-----a~lh 126 (346)
T PF02350_consen 57 IELADVLEREKPDAVLVLGDRNEALA--AALAAFYLNIPVA-HIEAGLRSGD--RTEGMPDEINRHAIDKL-----AHLH 126 (346)
T ss_dssp HHHHHHHHHHT-SEEEEETTSHHHHH--HHHHHHHTT-EEE-EES-----S---TTSSTTHHHHHHHHHHH------SEE
T ss_pred HHHHHHHHhcCCCEEEEEcCCchHHH--HHHHHHHhCCCEE-EecCCCCccc--cCCCCchhhhhhhhhhh-----hhhh
Confidence 45677777889999998543333332 112222334 643 3332211111 01123334555555555 5888
Q ss_pred EEcCHh-hHHhhhccc-----ccc--cccCCCccccchhhHHH--hhcCCCCCCceEEEEec-ccc---ccCHHHHHHHH
Q 012256 186 IRLSAA-TQEYANSII-----CNV--HGVNPKFLEIGKKKKEQ--QQNGTHAFAKGAYYIGK-MVW---SKGYKELLELL 251 (467)
Q Consensus 186 i~~S~~-~~~~~~~~i-----~~i--~gvd~~~~~~~~~~~~~--~~~~~~~~~~~il~vGr-l~~---~Kg~~~li~a~ 251 (467)
++.++. .+.+.+.++ .++ .++|.-........... ........++.+++... .+. ......+.+++
T Consensus 127 f~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l 206 (346)
T PF02350_consen 127 FAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEAL 206 (346)
T ss_dssp EESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHH
Confidence 888854 344544433 333 14442211111111000 01000122444554442 221 34567888888
Q ss_pred HHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHH-HHHHcCC
Q 012256 252 DDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA-EALAMGK 326 (467)
Q Consensus 252 ~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~l-EAma~G~ 326 (467)
..+.+. +++.+++.....+ ...+.+..+.+. +++++..+.+.+ .+++.|++.|-=| | .+. ||.++|+
T Consensus 207 ~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~ 278 (346)
T PF02350_consen 207 KALAER-QNVPVIFPLHNNPRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSLGK 278 (346)
T ss_dssp HHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGGT-
T ss_pred HHHHhc-CCCcEEEEecCCchHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHhCC
Confidence 888776 7888888876333 455666666663 899999998888 9999999998544 4 577 9999999
Q ss_pred eEEEeCC-CCc-cccccCCCEEeeC-CHHHHHHHHHHHHhc
Q 012256 327 IVVCANH-PSN-DFFKQFPNCRTYD-DRNGFVEATLKALAE 364 (467)
Q Consensus 327 PVV~t~~-g~~-e~v~~~~~g~~~~-~~~~l~~~i~~~l~~ 364 (467)
|+|.-+. |.+ +....+.+-+ +. |.+++.+++.+++.+
T Consensus 279 P~v~iR~~geRqe~r~~~~nvl-v~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 279 PVVNIRDSGERQEGRERGSNVL-VGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp -EEECSSS-S-HHHHHTTSEEE-ETSSHHHHHHHHHHHHH-
T ss_pred eEEEecCCCCCHHHHhhcceEE-eCCCHHHHHHHHHHHHhC
Confidence 9999977 665 6666665555 77 999999999999986
No 120
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=2.5e-05 Score=74.99 Aligned_cols=205 Identities=13% Similarity=0.062 Sum_probs=118.4
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
.++.+.+...+||++++-+.+.+++- .....++..|.+-++|--.|.-.. |+......+ ..+||+++
T Consensus 75 ~~~~~~i~~~kpD~~i~IDsPdFnl~--vak~lrk~~p~i~iihYV~PsVWA------Wr~~Ra~~i-----~~~~D~lL 141 (381)
T COG0763 75 RELVRYILANKPDVLILIDSPDFNLR--VAKKLRKAGPKIKIIHYVSPSVWA------WRPKRAVKI-----AKYVDHLL 141 (381)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCchH--HHHHHHHhCCCCCeEEEECcceee------echhhHHHH-----HHHhhHee
Confidence 34566666889999999887777775 223333333444444433332211 111111122 23369999
Q ss_pred EcCHhhHHhhh-cccccc---cccCCCc-cccchhhHHHhhc-CCCCCCceEEEEec-cc-cccCHHHHHHHHHHHHhhc
Q 012256 187 RLSAATQEYAN-SIICNV---HGVNPKF-LEIGKKKKEQQQN-GTHAFAKGAYYIGK-MV-WSKGYKELLELLDDHQKEL 258 (467)
Q Consensus 187 ~~S~~~~~~~~-~~i~~i---~gvd~~~-~~~~~~~~~~~~~-~~~~~~~~il~vGr-l~-~~Kg~~~li~a~~~l~~~~ 258 (467)
++=+.-.++.. .++... |-.-... +.+++.. ...+. ...+.+...+.-|. -+ =.+....+.+++..++++.
T Consensus 142 ailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~~r~~-ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~ 220 (381)
T COG0763 142 AILPFEPAFYDKFGLPCTYVGHPLADEIPLLPDREA-AREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARY 220 (381)
T ss_pred eecCCCHHHHHhcCCCeEEeCChhhhhccccccHHH-HHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhC
Confidence 99876555443 333322 3222222 3333322 22223 23333445556664 22 2567888899999999999
Q ss_pred CCeEEEEEecCCCHHHHHH-HHHhcC--CeeEEecCCCCHH-HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 259 AGLEVDLYGNGEDFNQIQE-AAEKLK--IVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~-~~~~~~--~~v~~~g~~~~~~-~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
|+.++++-=.....+.+.. ..+... .+..+. +... +.+..||+.+..| |++.+|+|.+|+|.|.+--
T Consensus 221 ~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk 291 (381)
T COG0763 221 PDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILI---DGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYK 291 (381)
T ss_pred CCceEEEecCcHHHHHHHHHHhhccccCceEEec---CchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEe
Confidence 9999999776555343333 332222 222222 2223 8899999999887 8999999999999888764
No 121
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.95 E-value=0.00077 Score=65.26 Aligned_cols=219 Identities=15% Similarity=0.066 Sum_probs=117.7
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
...+.+.+++++||++++.......-. +..+. .|.+.+..+...... .+ +..-+||.+
T Consensus 72 ~~~l~~~~~~~~pDv~is~~s~~a~~v--a~~lg---iP~I~f~D~e~a~~~----------------~~-Lt~Pla~~i 129 (335)
T PF04007_consen 72 QYKLLKLIKKFKPDVAISFGSPEAARV--AFGLG---IPSIVFNDTEHAIAQ----------------NR-LTLPLADVI 129 (335)
T ss_pred HHHHHHHHHhhCCCEEEecCcHHHHHH--HHHhC---CCeEEEecCchhhcc----------------ce-eehhcCCee
Confidence 346777788899999998654433222 11122 488877765322111 11 122347888
Q ss_pred EEcCHhhH----Hhhhc-ccccccccCC----CccccchhhHHHhhcCCCCCCceEEEEecccccc-----C-HHHHHHH
Q 012256 186 IRLSAATQ----EYANS-IICNVHGVNP----KFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSK-----G-YKELLEL 250 (467)
Q Consensus 186 i~~S~~~~----~~~~~-~i~~i~gvd~----~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~K-----g-~~~li~a 250 (467)
++++..-. ++-.+ .+...+|++. ..|.|+..-- ...+.+ +.+.|+. |..+.+ | -..+-+.
T Consensus 130 ~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd~~vl--~~lg~~-~~~yIvv--R~~~~~A~y~~~~~~i~~~i 204 (335)
T PF04007_consen 130 ITPEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPDPEVL--KELGLD-DEPYIVV--RPEAWKASYDNGKKSILPEI 204 (335)
T ss_pred ECCcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCChhHH--HHcCCC-CCCEEEE--EeccccCeeecCccchHHHH
Confidence 88874322 22222 2333356662 2255553322 222222 2344442 443322 2 2334456
Q ss_pred HHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEE
Q 012256 251 LDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 330 (467)
Q Consensus 251 ~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~ 330 (467)
++.+.+. .+. ++++-..++...+ .++.+ +.+....-+.-.++..||++|-- -|....||...|+|.|+
T Consensus 205 i~~L~~~-~~~-vV~ipr~~~~~~~---~~~~~--~~i~~~~vd~~~Ll~~a~l~Ig~-----ggTMa~EAA~LGtPaIs 272 (335)
T PF04007_consen 205 IEELEKY-GRN-VVIIPRYEDQREL---FEKYG--VIIPPEPVDGLDLLYYADLVIGG-----GGTMAREAALLGTPAIS 272 (335)
T ss_pred HHHHHhh-Cce-EEEecCCcchhhH---HhccC--ccccCCCCCHHHHHHhcCEEEeC-----CcHHHHHHHHhCCCEEE
Confidence 6666554 343 5555544332222 22332 33433322333799999999943 36788999999999999
Q ss_pred eCCCC---c-cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 331 ANHPS---N-DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 331 t~~g~---~-e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
+..|. . +++.+ .|+++. |++++.+.+.+.+...
T Consensus 273 ~~~g~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~~~ 311 (335)
T PF04007_consen 273 CFPGKLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLGKR 311 (335)
T ss_pred ecCCcchhHHHHHHH--CCCeEecCCHHHHHHHHHHhhhcc
Confidence 87643 2 34433 366665 9999998777765543
No 122
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.85 E-value=5.7e-05 Score=63.61 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=43.8
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhc--cCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcC
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKT--KFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH 183 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 183 (467)
+.++.+.+++.+|||||++.+...+.. +..+.+ +..|++.+.|+.+. ...... ..+.+.+.++..+ .+|
T Consensus 63 ~~~l~k~ik~~~~DvIh~h~~~~~~~~--~~l~~~~~~~~~~i~~~hg~~~--~~~~~~----~~~~~~~~~~~~k-~~~ 133 (139)
T PF13477_consen 63 YFRLRKIIKKEKPDVIHCHTPSPYGLF--AMLAKKLLKNKKVIYTVHGSDF--YNSSKK----KKLKKFIIKFAFK-RAD 133 (139)
T ss_pred HHHHHHHhccCCCCEEEEecCChHHHH--HHHHHHHcCCCCEEEEecCCee--ecCCch----HHHHHHHHHHHHH-hCC
Confidence 447888999999999999987654443 222222 22489999998643 211111 1133333333222 369
Q ss_pred EEEEcC
Q 012256 184 KVIRLS 189 (467)
Q Consensus 184 ~vi~~S 189 (467)
.+++.|
T Consensus 134 ~ii~~~ 139 (139)
T PF13477_consen 134 KIIVQS 139 (139)
T ss_pred EEEEcC
Confidence 888865
No 123
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.80 E-value=0.00038 Score=69.80 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=80.0
Q ss_pred CceEEEEeccccccCHHHHHH-HHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSKGYKELLE-LLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~-a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
..+++..|.+...+. . +++ +++.+. +.+.-.++..|.+.+...+. +...++.+.+++++. +++..||++|.
T Consensus 226 ~~v~vs~Gs~~~~~~-~-~~~~~~~al~-~~~~~~i~~~g~~~~~~~~~----~~~~~v~~~~~~p~~-~ll~~~~~~I~ 297 (392)
T TIGR01426 226 PVVLISLGTVFNNQP-S-FYRTCVEAFR-DLDWHVVLSVGRGVDPADLG----ELPPNVEVRQWVPQL-EILKKADAFIT 297 (392)
T ss_pred CEEEEecCccCCCCH-H-HHHHHHHHHh-cCCCeEEEEECCCCChhHhc----cCCCCeEEeCCCCHH-HHHhhCCEEEE
Confidence 345667777533322 2 333 222222 22322355567665543332 233478888888764 79999999996
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCCC-Cc----cccccCCCEEeeC----CHHHHHHHHHHHHhcCC
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANHP-SN----DFFKQFPNCRTYD----DRNGFVEATLKALAEEP 366 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~g-~~----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~ 366 (467)
.+ -..+++||+++|+|+|+.... .. +.+.+...|...+ ++++++++|.++++++.
T Consensus 298 hg----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~ 361 (392)
T TIGR01426 298 HG----GMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPR 361 (392)
T ss_pred CC----CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 54 235899999999999998873 32 2444545665543 78999999999998753
No 124
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.0086 Score=58.03 Aligned_cols=264 Identities=13% Similarity=0.067 Sum_probs=143.4
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+.+++||+|.++.-...++. +..++.+.+ |+..+--+.- .+-. . .+ -...++.+.. .+|..
T Consensus 82 ~~~~~vl~~~kPD~VlVhGDT~t~lA--~alaa~~~~IpV~HvEAGlR-t~~~-~-~P--EE~NR~l~~~-----~S~~h 149 (383)
T COG0381 82 EGLSKVLEEEKPDLVLVHGDTNTTLA--GALAAFYLKIPVGHVEAGLR-TGDL-Y-FP--EEINRRLTSH-----LSDLH 149 (383)
T ss_pred HHHHHHHHhhCCCEEEEeCCcchHHH--HHHHHHHhCCceEEEecccc-cCCC-C-Cc--HHHHHHHHHH-----hhhhh
Confidence 34667788999999999765555554 223332333 5543332211 0000 0 00 0111222222 25778
Q ss_pred EEcCH-hhHHhhhccc-----ccc-c-ccCCCccc---cchhhHHHhhcCCCCCCceEE-EEeccc-cccCHHHHHHHHH
Q 012256 186 IRLSA-ATQEYANSII-----CNV-H-GVNPKFLE---IGKKKKEQQQNGTHAFAKGAY-YIGKMV-WSKGYKELLELLD 252 (467)
Q Consensus 186 i~~S~-~~~~~~~~~i-----~~i-~-gvd~~~~~---~~~~~~~~~~~~~~~~~~~il-~vGrl~-~~Kg~~~li~a~~ 252 (467)
++++. +.+.+.+.++ .++ + -+|.-... ...............++..++ ..=|-+ ..+++..+++++.
T Consensus 150 fapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~ 229 (383)
T COG0381 150 FAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALR 229 (383)
T ss_pred cCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHH
Confidence 88884 4445555443 222 1 12210001 000111110102333333444 443433 3489999999999
Q ss_pred HHHhhcCCeEEEEEecCCCHHHHHHHH-HhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCe
Q 012256 253 DHQKELAGLEVDLYGNGEDFNQIQEAA-EKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 327 (467)
Q Consensus 253 ~l~~~~~~~~l~i~G~g~~~~~l~~~~-~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~P 327 (467)
++.+.++++.++.-= -+. ..+++.. +.++. ++.++..+...+ .++..|.+.+-=| |.-.=||-..|+|
T Consensus 230 ~i~~~~~~~~viyp~-H~~-~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg~P 302 (383)
T COG0381 230 EIAEEYPDVIVIYPV-HPR-PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLGKP 302 (383)
T ss_pred HHHHhCCCceEEEeC-CCC-hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcCCc
Confidence 998888888555433 222 3344433 34443 588888888888 7777775555333 5567899999999
Q ss_pred EEEeCCCC-c-cccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHHHHcCCHHHHHHHHHHHHh
Q 012256 328 VVCANHPS-N-DFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 328 VV~t~~g~-~-e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~~ 391 (467)
|++-+... + |-++.+ +-.++. +.+.+.+++..+++++.. +|+. +..-|.=..+.+|+.++..
T Consensus 303 vl~lR~~TERPE~v~ag-t~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~-~~npYgdg~as~rIv~~l~ 369 (383)
T COG0381 303 VLVLRDTTERPEGVEAG-TNILVGTDEENILDAATELLEDEEFYERMSN-AKNPYGDGNASERIVEILL 369 (383)
T ss_pred EEeeccCCCCccceecC-ceEEeCccHHHHHHHHHHHhhChHHHHHHhc-ccCCCcCcchHHHHHHHHH
Confidence 99999965 3 655554 345666 999999999999998654 2322 1123333344555555444
No 125
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=97.53 E-value=6.3e-05 Score=64.39 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=39.6
Q ss_pred hhhhccC--CCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcC
Q 012256 107 GDISEVI--PDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH 183 (467)
Q Consensus 107 ~~l~~~l--~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 183 (467)
..+.+.+ ...+||+||++.+. ..+. +....+..+ |++..+|+...... ..+...+.+.+.+. ....||
T Consensus 61 ~~~~~~l~~~~~~~Dvv~~~~~~-~~~~--~~~~~~~~~~p~v~~~h~~~~~~~-----~~~~~~~~~~~~~~-~~~~ad 131 (160)
T PF13579_consen 61 RRLRRLLAARRERPDVVHAHSPT-AGLV--AALARRRRGIPLVVTVHGTLFRRG-----SRWKRRLYRWLERR-LLRRAD 131 (160)
T ss_dssp HHHHHHCHHCT---SEEEEEHHH-HHHH--HHHHHHHHT--EEEE-SS-T-----------HHHHHHHHHHHH-HHHH-S
T ss_pred HHHHHHHhhhccCCeEEEecccc-hhHH--HHHHHHccCCcEEEEECCCchhhc-----cchhhHHHHHHHHH-HHhcCC
Confidence 4566777 88999999998843 2222 112221334 99999998543221 11223333333333 122279
Q ss_pred EEEEcCHhhHHhh
Q 012256 184 KVIRLSAATQEYA 196 (467)
Q Consensus 184 ~vi~~S~~~~~~~ 196 (467)
.++++|+...+..
T Consensus 132 ~vi~~S~~~~~~l 144 (160)
T PF13579_consen 132 RVIVVSEAMRRYL 144 (160)
T ss_dssp EEEESSHHHHHHH
T ss_pred EEEECCHHHHHHH
Confidence 9999998766544
No 126
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.50 E-value=0.002 Score=66.33 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=111.7
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhccCC---cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR---YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~---~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
++.+.+.+++||++++-+.+.+++.- +++.. +.+ |++..+--....+ +....+.+.+. +|+
T Consensus 301 ~l~~~i~~~kPD~vIlID~PgFNlrL-AK~lk-k~Gi~ipviyYVsPqVWAW---------R~~Rikki~k~-----vD~ 364 (608)
T PRK01021 301 KLYKTILKTNPRTVICIDFPDFHFLL-IKKLR-KRGYKGKIVHYVCPSIWAW---------RPKRKTILEKY-----LDL 364 (608)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCHHH-HHHHH-hcCCCCCEEEEECccceee---------CcchHHHHHHH-----hhh
Confidence 45566778899999998888888762 23333 333 6555543211111 11222333333 488
Q ss_pred EEEcCHhhHHhhhc-ccccc---ccc-CCCccccchhhHHHhhcCCCCCCc-eEEEEec-ccc-ccCHHHHHHHHH--HH
Q 012256 185 VIRLSAATQEYANS-IICNV---HGV-NPKFLEIGKKKKEQQQNGTHAFAK-GAYYIGK-MVW-SKGYKELLELLD--DH 254 (467)
Q Consensus 185 vi~~S~~~~~~~~~-~i~~i---~gv-d~~~~~~~~~~~~~~~~~~~~~~~-~il~vGr-l~~-~Kg~~~li~a~~--~l 254 (467)
++|+=+.-.++.++ ++... |.. |.-...++.. ...++...+++++ +.++-|. -.+ .+.+..+++++. .+
T Consensus 365 ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~-~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l 443 (608)
T PRK01021 365 LLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNL-SWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSL 443 (608)
T ss_pred heecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHH-HHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88888775655543 33222 211 1100111111 1122222232333 4455554 322 467788888887 44
Q ss_pred HhhcCCeEEEEEecCC-CHHHHHHHHHhcC-CeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeC
Q 012256 255 QKELAGLEVDLYGNGE-DFNQIQEAAEKLK-IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~-~~~~l~~~~~~~~-~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~ 332 (467)
. ++.++++....+ +.+.+++..++.+ .++++...- +..+++++||+.+..| |++.+|++.+|+|.|..-
T Consensus 444 ~---~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~Y 514 (608)
T PRK01021 444 A---STHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECDCALAKC-----GTIVLETALNQTPTIVTC 514 (608)
T ss_pred c---cCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEE
Confidence 3 357787754332 2455666665444 244544221 1238999999999987 899999999999988765
Q ss_pred C
Q 012256 333 H 333 (467)
Q Consensus 333 ~ 333 (467)
-
T Consensus 515 K 515 (608)
T PRK01021 515 Q 515 (608)
T ss_pred e
Confidence 4
No 127
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.39 E-value=0.068 Score=50.42 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=102.5
Q ss_pred ceEEEEec-cccccCHHHHHHHHHHHHhhcCCeEEEEE-ec--CC--CHHHHHHHHHhcCC--eeEEe-cCCCCHH--HH
Q 012256 230 KGAYYIGK-MVWSKGYKELLELLDDHQKELAGLEVDLY-GN--GE--DFNQIQEAAEKLKI--VVRVY-PGRDHAD--LI 298 (467)
Q Consensus 230 ~~il~vGr-l~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~--g~--~~~~l~~~~~~~~~--~v~~~-g~~~~~~--~~ 298 (467)
+..+-+|+ -++..++.++++++.+.. ..++++++- |- |. ..+++++..+++-- ++.++ ..++-.+ ++
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~l 223 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLAL 223 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHH
Confidence 45556666 678889988888886654 457777773 32 22 24556666666543 66666 5677777 99
Q ss_pred HHhcCeEEecC-CCCCCcHHHHHHHHcCCeEEEeCC-CC-ccccccCCCEEeeC----CHHHHHHHHHHHHhcCCCCccH
Q 012256 299 FHDYKVFLNPS-TTDVVCTTTAEALAMGKIVVCANH-PS-NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPALPTE 371 (467)
Q Consensus 299 ~~~adv~v~ps-~~e~~~~~~lEAma~G~PVV~t~~-g~-~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~~~~~ 371 (467)
++.||+.++-- +-+++|+ ++=.+..|+||+-+.. +. .++.+.+-. ++++ |...+.++=+++...+.+..
T Consensus 224 L~~~Dl~~f~~~RQQgiGn-l~lLi~~G~~v~l~r~n~fwqdl~e~gv~-Vlf~~d~L~~~~v~e~~rql~~~dk~~I-- 299 (322)
T PRK02797 224 LRQCDLGYFIFARQQGIGT-LCLLIQLGKPVVLSRDNPFWQDLTEQGLP-VLFTGDDLDEDIVREAQRQLASVDKNII-- 299 (322)
T ss_pred HHhCCEEEEeechhhHHhH-HHHHHHCCCcEEEecCCchHHHHHhCCCe-EEecCCcccHHHHHHHHHHHHhhCccee--
Confidence 99999998874 4578875 4557899999999988 54 465555432 3233 66666665444444333222
Q ss_pred HHHHcCCHHHHHHHHHHHHhcccc
Q 012256 372 AQRHQLSWESATERFLQVAELDQA 395 (467)
Q Consensus 372 ~~~~~~sw~~~~~~~~~~~~~~~~ 395 (467)
.|+-++.++...++++.+..
T Consensus 300 ----~Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 300 ----AFFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred ----eecCHhHHHHHHHHHHHhhC
Confidence 27888888888888876553
No 128
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.034 Score=50.69 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=64.5
Q ss_pred CCCCCceEEEEeccccccCH--H---HHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHh-cCC-eeEEecCCCCHH-
Q 012256 225 THAFAKGAYYIGKMVWSKGY--K---ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LKI-VVRVYPGRDHAD- 296 (467)
Q Consensus 225 ~~~~~~~il~vGrl~~~Kg~--~---~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~~-~v~~~g~~~~~~- 296 (467)
..+...+.++||.-++.-.+ + .++.++.+..++ ....+++-=+....+.+++..+. +.- ...+..+-+...
T Consensus 158 p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~N 236 (329)
T COG3660 158 PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-QGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYN 236 (329)
T ss_pred CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-CCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCC
Confidence 45567789999976665444 2 233333333322 24567766665555666666654 221 334443332222
Q ss_pred ---HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 297 ---LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 297 ---~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
++|.+||.+|.+.-.- .-.-||.|.|+||.+...+
T Consensus 237 PY~~~La~Adyii~TaDSi---nM~sEAasTgkPv~~~~~~ 274 (329)
T COG3660 237 PYIDMLAAADYIISTADSI---NMCSEAASTGKPVFILEPP 274 (329)
T ss_pred chHHHHhhcceEEEecchh---hhhHHHhccCCCeEEEecC
Confidence 8999999999874332 2368999999999887763
No 129
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.008 Score=55.34 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=59.0
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEec-CCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecC
Q 012256 231 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 309 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~-g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps 309 (467)
+++..|.-+ -|| ..++.+..+.+..-+++++ +|+ .|....+.+.+++.+ +++++-..++-.++|..||..+...
T Consensus 161 ilI~lGGsD-pk~--lt~kvl~~L~~~~~nl~iV-~gs~~p~l~~l~k~~~~~~-~i~~~~~~~dma~LMke~d~aI~Aa 235 (318)
T COG3980 161 ILITLGGSD-PKN--LTLKVLAELEQKNVNLHIV-VGSSNPTLKNLRKRAEKYP-NINLYIDTNDMAELMKEADLAISAA 235 (318)
T ss_pred EEEEccCCC-hhh--hHHHHHHHhhccCeeEEEE-ecCCCcchhHHHHHHhhCC-CeeeEecchhHHHHHHhcchheecc
Confidence 566666533 343 3456666665543355443 454 345677777777665 6676666555559999999998664
Q ss_pred CCCCCcHHHHHHHHcCCe
Q 012256 310 TTDVVCTTTAEALAMGKI 327 (467)
Q Consensus 310 ~~e~~~~~~lEAma~G~P 327 (467)
|.++.||+..|+|
T Consensus 236 -----GstlyEa~~lgvP 248 (318)
T COG3980 236 -----GSTLYEALLLGVP 248 (318)
T ss_pred -----chHHHHHHHhcCC
Confidence 8899999999999
No 130
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0096 Score=57.24 Aligned_cols=196 Identities=14% Similarity=0.099 Sum_probs=111.0
Q ss_pred CEEEEcCHhh-H-Hhhhccc-ccc----cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHH-HHHHH
Q 012256 183 HKVIRLSAAT-Q-EYANSII-CNV----HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLE-LLDDH 254 (467)
Q Consensus 183 d~vi~~S~~~-~-~~~~~~i-~~i----~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~-a~~~l 254 (467)
|.|++.++.. . .+..... ... .++|++.|.+-.... ...-.+.++|+..+. ..+.++ .+-.-
T Consensus 140 d~v~~~g~~l~~~~yyq~~~~~~~~~~~~a~d~~~~~~i~~da--------~~~~dL~~ign~~pD--r~e~~ke~~~~p 209 (373)
T COG4641 140 DNVLSFGGGLVANKYYQEGGARNCYYLPWAVDDSLFHPIPPDA--------SYDVDLNLIGNPYPD--RVEEIKEFFVEP 209 (373)
T ss_pred hhhhhccchHHHHHHHHhhcccceeccCccCCchhcccCCccc--------cceeeeEEecCCCcc--HHHHHHHHhhcc
Confidence 5566667554 2 3332222 222 377777776644222 112258899976554 322222 22111
Q ss_pred Hhhc-CCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH---HHHHhcCeEEecCCC---CC---CcHHHHHHHHc
Q 012256 255 QKEL-AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPSTT---DV---VCTTTAEALAM 324 (467)
Q Consensus 255 ~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~adv~v~ps~~---e~---~~~~~lEAma~ 324 (467)
..+. .+-++...|..-........ .-.++...|.+...+ ..++-.|++++-++. ++ +.+-+.|+|+|
T Consensus 210 s~kl~v~rr~~~~g~~y~~~~~~~~---~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc 286 (373)
T COG4641 210 SFKLMVDRRFYVLGPRYPDDIWGRT---WEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGC 286 (373)
T ss_pred chhhhccceeeecCCccchhhhccc---ccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhc
Confidence 1111 23467777765111111110 011334456655523 667777888776543 33 37889999999
Q ss_pred CCeEEEeCCCC-ccccccCCCEEeeCCHHHHHHHHHHHHhcCCC--CccH----HHHHcCCHHHHHHHHHHHHh
Q 012256 325 GKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTE----AQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 325 G~PVV~t~~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~----~~~~~~sw~~~~~~~~~~~~ 391 (467)
|.|.|++...+ ...+.+++.-.++.|..++.+.++.++..+.+ .+.+ +.+..++.+.-+..+++...
T Consensus 287 ~~~liT~~~~~~e~~f~pgk~~iv~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~ 360 (373)
T COG4641 287 GGFLITDYWKDLEKFFKPGKDIIVYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIA 360 (373)
T ss_pred CCccccccHHHHHHhcCCchheEEecCHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Confidence 99999888855 46788877656666999999999999998755 3333 22244666666655554444
No 131
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.94 E-value=5.2e-05 Score=66.24 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=64.0
Q ss_pred EEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC----c--
Q 012256 263 VDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-- 336 (467)
Q Consensus 263 l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~----~-- 336 (467)
+++.|.... ..........+.++.++++.++-.++|+.||++|.- +-+.++.|++++|+|.|.-..+. .
T Consensus 35 iv~~G~~~~-~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~ 109 (167)
T PF04101_consen 35 IVQTGKNNY-EELKIKVENFNPNVKVFGFVDNMAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAADNHQE 109 (167)
T ss_dssp CCCCTTCEC-HHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T-CHH
T ss_pred EEEECCCcH-HHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcchHHHH
Confidence 556676644 333322333435789999998888999999998843 34679999999999988776633 1
Q ss_pred ---cccccCCCEEeeC----CHHHHHHHHHHHHhcCCC
Q 012256 337 ---DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 337 ---e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~ 367 (467)
..+.+...|..+. +++.+.++|..++.++..
T Consensus 110 ~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 110 ENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp HHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-
T ss_pred HHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHH
Confidence 1344433343332 578899999998887654
No 132
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.84 E-value=0.13 Score=49.03 Aligned_cols=129 Identities=18% Similarity=0.148 Sum_probs=80.2
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCe---EEEEEecCCCHHH---HHHHHHhcCCeeEEecCCCCHHHHHHhc
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGL---EVDLYGNGEDFNQ---IQEAAEKLKIVVRVYPGRDHADLIFHDY 302 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~---~l~i~G~g~~~~~---l~~~~~~~~~~v~~~g~~~~~~~~~~~a 302 (467)
..+++.+|. -.-|.+.+-.++..... .+++ -++|.|.--...+ +...+.+.+ ++.++.+..+...|+..|
T Consensus 220 ~~Ilvs~GG--G~dG~eLi~~~l~A~~~-l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p-~i~I~~f~~~~~~ll~gA 295 (400)
T COG4671 220 FDILVSVGG--GADGAELIETALAAAQL-LAGLNHKWLIVTGPFMPEAQRQKLLASAPKRP-HISIFEFRNDFESLLAGA 295 (400)
T ss_pred ceEEEecCC--ChhhHHHHHHHHHHhhh-CCCCCcceEEEeCCCCCHHHHHHHHHhcccCC-CeEEEEhhhhHHHHHHhh
Confidence 446667774 45565555544443322 1332 3777886444344 444343333 788888888888999999
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC--CCcccc-c---cCCCE---EeeC---CHHHHHHHHHHHHhcC
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH--PSNDFF-K---QFPNC---RTYD---DRNGFVEATLKALAEE 365 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~--g~~e~v-~---~~~~g---~~~~---~~~~l~~~i~~~l~~~ 365 (467)
+..|--+-| +++.|-++.|||.+.-.. |..|.+ . -.+-| ++-+ +++.|+++|..+++.+
T Consensus 296 ~~vVSm~GY----NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 296 RLVVSMGGY----NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred heeeecccc----hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 999854322 688999999998776655 433321 1 01122 3333 8899999999988864
No 133
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.75 E-value=0.0066 Score=59.29 Aligned_cols=91 Identities=14% Similarity=0.023 Sum_probs=62.1
Q ss_pred eEEEEeccc--cccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEec
Q 012256 231 GAYYIGKMV--WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 308 (467)
Q Consensus 231 ~il~vGrl~--~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~p 308 (467)
+.++-|.-. -.+.+..+++++.++.++. ..+++.|.... +.+++...+.. .+.+.+ +..++|+.||+.+..
T Consensus 170 I~llPGSR~~Ei~~llP~~~~aa~~L~~~~--~~~~i~~a~~~-~~i~~~~~~~~-~~~~~~---~~~~~m~~aDlal~~ 242 (347)
T PRK14089 170 IAFMPGSRKSEIKRLMPIFKELAKKLEGKE--KILVVPSFFKG-KDLKEIYGDIS-EFEISY---DTHKALLEAEFAFIC 242 (347)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHhhcC--cEEEEeCCCcH-HHHHHHHhcCC-CcEEec---cHHHHHHhhhHHHhc
Confidence 444445422 2356777889999988653 67888876533 55555544322 344443 334899999999988
Q ss_pred CCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 309 STTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 309 s~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
| |.+++|++.+|+|.|..-.
T Consensus 243 S-----GT~TLE~al~g~P~Vv~Yk 262 (347)
T PRK14089 243 S-----GTATLEAALIGTPFVLAYK 262 (347)
T ss_pred C-----cHHHHHHHHhCCCEEEEEe
Confidence 7 8899999999999998554
No 134
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.60 E-value=0.06 Score=55.82 Aligned_cols=125 Identities=16% Similarity=0.010 Sum_probs=73.3
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEec
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 308 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~p 308 (467)
..+++..|.+.. .-.+..++++....++.|+ +++..=++..... ++.++.+..++++. ++|+...+-++-
T Consensus 277 ~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~-------l~~n~~~~~W~PQ~-~lL~hp~v~~fi 346 (500)
T PF00201_consen 277 GVVYVSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPEN-------LPKNVLIVKWLPQN-DLLAHPRVKLFI 346 (500)
T ss_dssp EEEEEE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCH-------HHTTEEEESS--HH-HHHTSTTEEEEE
T ss_pred CEEEEecCcccc-hhHHHHHHHHHHHHhhCCC-ccccccccccccc-------ccceEEEeccccch-hhhhcccceeee
Confidence 445666677642 2233333333333334555 5666555422222 22377788999876 578765443332
Q ss_pred CCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccCCCEEeeC----CHHHHHHHHHHHHhcC
Q 012256 309 STTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQFPNCRTYD----DRNGFVEATLKALAEE 365 (467)
Q Consensus 309 s~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~ 365 (467)
+-|--+++.||+.+|+|+|+-.. +.+ ..+.+...|...+ +.+++.++|.++++|+
T Consensus 347 --tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 347 --THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp --ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred --eccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 45667899999999999999999 652 3455555676655 8899999999999984
No 135
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.34 E-value=0.0006 Score=59.00 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=63.1
Q ss_pred ccccccCCCccccceeccchhhhhccCC--CCCCCEEEecCCccccchhhhhhhhccCC--cEEEEE----------ecc
Q 012256 87 FDIRFYPGKFAIDKRSILGVGDISEVIP--DEVADIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIV----------HTN 152 (467)
Q Consensus 87 ~~~~~y~~~~~~~~~~~~~~~~l~~~l~--~~~~DvI~~~~~~~~~~~~~~~~~~~~~~--~~v~~~----------h~~ 152 (467)
..++.|-..+.........+.+....|+ .+.||||+.+.-..-.++ +..-+- |++..+ +++
T Consensus 34 ~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe~Lf-----lkdv~P~a~li~Y~E~~y~~~g~d~~F 108 (171)
T PF12000_consen 34 PGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGETLF-----LKDVFPDAPLIGYFEFYYRASGADVGF 108 (171)
T ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcchhhh-----HHHhCCCCcEEEEEEEEecCCCCcCCC
Confidence 3444444444444444444444444444 578999999653333333 222231 444332 233
Q ss_pred hHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhH----Hhhhccccccc-ccCCCcc
Q 012256 153 YLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQ----EYANSIICNVH-GVNPKFL 211 (467)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~----~~~~~~i~~i~-gvd~~~~ 211 (467)
++++.. ..........+.+..++....||..+++|..-+ ...++++.++| |||++.+
T Consensus 109 Dpe~p~--~~~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~fP~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 109 DPEFPP--SLDDRARLRMRNAHNLLALEQADAGISPTRWQRSQFPAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred CCCCCC--CHHHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhCCHHHHcCcEEeecccchhhc
Confidence 444321 112233344455555556666999999996533 33457888886 9998765
No 136
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.32 E-value=0.61 Score=44.80 Aligned_cols=135 Identities=16% Similarity=0.090 Sum_probs=89.7
Q ss_pred CceEEEEec-cccccCHHHHHHHHHHHHhhcCCeEEEE-EecCC----CHHHHHHHHHhc-CC-eeEEe-cCCCCHH--H
Q 012256 229 AKGAYYIGK-MVWSKGYKELLELLDDHQKELAGLEVDL-YGNGE----DFNQIQEAAEKL-KI-VVRVY-PGRDHAD--L 297 (467)
Q Consensus 229 ~~~il~vGr-l~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~----~~~~l~~~~~~~-~~-~v~~~-g~~~~~~--~ 297 (467)
.+.-+.+|+ -++..++.++++++.+.. ..++++++ .|-|. ..+++.+..+++ +. ++.++ ..++.++ +
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 345556666 778888977777776532 34677776 34332 245566666655 32 56666 6778888 9
Q ss_pred HHHhcCeEEecCCC-CCCcHHHHHHHHcCCeEEEeCCCC-c-cccccCCCEEee--C--CHHHHHHHHHHHHhcCCC
Q 012256 298 IFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPS-N-DFFKQFPNCRTY--D--DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 298 ~~~~adv~v~ps~~-e~~~~~~lEAma~G~PVV~t~~g~-~-e~v~~~~~g~~~--~--~~~~l~~~i~~~l~~~~~ 367 (467)
+++.||+.++.... .++|+ ++=.+.+|+||+-++... - ++.+.+ --+++ | |.+.+.++=+++..-+..
T Consensus 262 lL~~cDl~if~~~RQQgiGn-I~lLl~~G~~v~L~~~np~~~~l~~~~-ipVlf~~d~L~~~~v~ea~rql~~~dk~ 336 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGN-ICLLLQLGKKVFLSRDNPFWQDLKEQG-IPVLFYGDELDEALVREAQRQLANVDKQ 336 (360)
T ss_pred HHHhCCEEEEeechhhhHhH-HHHHHHcCCeEEEecCChHHHHHHhCC-CeEEeccccCCHHHHHHHHHHHhhCccc
Confidence 99999999999654 67775 556899999999999944 3 444443 22333 3 777888877776655443
No 137
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.27 E-value=0.058 Score=54.18 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=83.5
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEec
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 308 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~p 308 (467)
+++++..|..... ..+++.+-..... -+.++++...+.+ .. ......++.+.+.+++.+ ++..||++|..
T Consensus 238 ~~vyvslGt~~~~---~~l~~~~~~a~~~-l~~~vi~~~~~~~-~~----~~~~p~n~~v~~~~p~~~-~l~~ad~vI~h 307 (406)
T COG1819 238 PIVYVSLGTVGNA---VELLAIVLEALAD-LDVRVIVSLGGAR-DT----LVNVPDNVIVADYVPQLE-LLPRADAVIHH 307 (406)
T ss_pred CeEEEEcCCcccH---HHHHHHHHHHHhc-CCcEEEEeccccc-cc----cccCCCceEEecCCCHHH-HhhhcCEEEec
Confidence 3445555665444 5555544444333 3566777664312 11 223445777788888875 99999999955
Q ss_pred CCCCCCcHHHHHHHHcCCeEEEeCCCC-c----cccccCCCEEeeC----CHHHHHHHHHHHHhcCC
Q 012256 309 STTDVVCTTTAEALAMGKIVVCANHPS-N----DFFKQFPNCRTYD----DRNGFVEATLKALAEEP 366 (467)
Q Consensus 309 s~~e~~~~~~lEAma~G~PVV~t~~g~-~----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~ 366 (467)
|--.++.||+..|+|+|.-..+. + +-+++-..|.... +++.++++|.++|+++.
T Consensus 308 ----GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~ 370 (406)
T COG1819 308 ----GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDS 370 (406)
T ss_pred ----CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHH
Confidence 44568999999999999998854 2 3556666675443 99999999999999854
No 138
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.0033 Score=61.05 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=64.3
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-----ccccccC-CCE-EeeC----CHHHHHHHHHHHHh--
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNC-RTYD----DRNGFVEATLKALA-- 363 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-----~e~v~~~-~~g-~~~~----~~~~l~~~i~~~l~-- 363 (467)
++.+.|++.|+||++|++|.+..|.-.||.|-|+|+..+ .|.+++. .-| ++++ ++++-.+.+...+.
T Consensus 496 eFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~~F 575 (692)
T KOG3742|consen 496 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMYEF 575 (692)
T ss_pred HHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999943 2566554 234 5555 55544444444333
Q ss_pred --cCCC-CccH-----HHHHcCCHHHHHHHHHHHHhc
Q 012256 364 --EEPA-LPTE-----AQRHQLSWESATERFLQVAEL 392 (467)
Q Consensus 364 --~~~~-~~~~-----~~~~~~sw~~~~~~~~~~~~~ 392 (467)
.... +.-+ .-..-.+|..+...|.+.-.+
T Consensus 576 ~~qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~l 612 (692)
T KOG3742|consen 576 CKQSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHL 612 (692)
T ss_pred HHHHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHH
Confidence 2111 1111 111558899888777665443
No 139
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.79 E-value=0.48 Score=48.29 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=55.8
Q ss_pred eeEEecCCCCHHHHHHhcCe--EEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccC-CCEEeeC---CHHH
Q 012256 285 VVRVYPGRDHADLIFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQF-PNCRTYD---DRNG 353 (467)
Q Consensus 285 ~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~-~~g~~~~---~~~~ 353 (467)
+..+.+++++.+ ++...++ || +.+--++++||+++|+|+|+-.. +.+ ..+.+. +.|+.++ +.++
T Consensus 325 ~g~v~~w~PQ~~-iL~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 325 RGYIVKWAPQKE-VLSHPAVGGFW----SHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred CeEEEccCCHHH-HhCCCccCeee----ecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 556678888875 7777555 65 34455789999999999999888 432 233333 5676653 8999
Q ss_pred HHHHHHHHHhcC
Q 012256 354 FVEATLKALAEE 365 (467)
Q Consensus 354 l~~~i~~~l~~~ 365 (467)
++++|++++.++
T Consensus 400 v~~av~~lm~~~ 411 (451)
T PLN02410 400 VERAVKRLMVEE 411 (451)
T ss_pred HHHHHHHHHcCC
Confidence 999999999874
No 140
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.25 E-value=0.18 Score=53.98 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=93.3
Q ss_pred CCCCceEEEEeccccccCHHH-HHHH---HHHHHhhc----CCeEEEEEecCCC--------HHHHHHHHH------hcC
Q 012256 226 HAFAKGAYYIGKMVWSKGYKE-LLEL---LDDHQKEL----AGLEVDLYGNGED--------FNQIQEAAE------KLK 283 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~-li~a---~~~l~~~~----~~~~l~i~G~g~~--------~~~l~~~~~------~~~ 283 (467)
.++...++++-|+...|...+ ++.. +.++++.. ....+++.|.-.. ...+-+.++ ..+
T Consensus 540 dp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~ 619 (815)
T PRK14986 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIG 619 (815)
T ss_pred CcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhc
Confidence 455677888889999999888 5555 55554431 2477888884222 122333333 122
Q ss_pred --CeeEEecCC--CCHHHHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc--CCCEEeeC-CHHH
Q 012256 284 --IVVRVYPGR--DHADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ--FPNCRTYD-DRNG 353 (467)
Q Consensus 284 --~~v~~~g~~--~~~~~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~--~~~g~~~~-~~~~ 353 (467)
+.|.|+..+ +-.+.++.+|||-.+.|+ .|..|+.=+=||.-|.+-++|-.|.. |+.++ +.||+++- +.++
T Consensus 620 ~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~e 699 (815)
T PRK14986 620 DKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEE 699 (815)
T ss_pred CceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHH
Confidence 257777654 444489999999999887 59999999999999999999999985 76665 78999997 7777
Q ss_pred HHHH
Q 012256 354 FVEA 357 (467)
Q Consensus 354 l~~~ 357 (467)
..+-
T Consensus 700 v~~~ 703 (815)
T PRK14986 700 VEAL 703 (815)
T ss_pred HHHH
Confidence 6543
No 141
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=95.02 E-value=1.6 Score=40.39 Aligned_cols=233 Identities=17% Similarity=0.142 Sum_probs=104.1
Q ss_pred CCCEEEecCCccccchh----hhhhhhccCC---cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcC
Q 012256 117 VADIAVLEEPEHLTWFH----HGKRWKTKFR---YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLS 189 (467)
Q Consensus 117 ~~DvI~~~~~~~~~~~~----~~~~~~~~~~---~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S 189 (467)
++|++++..-+.-..-+ .-.++.++.+ .+|++.|....-.++ +++. +...++. ||.|++-|
T Consensus 61 ~yDI~m~nSvPa~~vqE~~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~--rn~~----le~~m~~------~DvIfshs 128 (355)
T PF11440_consen 61 DYDIVMFNSVPATKVQEAIINNYEKIIKKIKPSIKVVGFMHDHNKLSID--RNPY----LEGTMNE------MDVIFSHS 128 (355)
T ss_dssp SSSEEEEEE--BTTS-HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHT--TBSS----HHHHHHH-------SEEEES-
T ss_pred ccCEEEEecccCchHHHHHHHHHHHHHHhccccceeEEEeeccceeecc--cccc----HHHHHHh------hcEEEecc
Confidence 78999884432222110 0124555555 357788875543442 3432 2222233 49999988
Q ss_pred Hh-------hHHhhhcccccccccC--C--CccccchhhHHHhh-cCCCCCCceE---EEEeccccccCHHHHHHHHHHH
Q 012256 190 AA-------TQEYANSIICNVHGVN--P--KFLEIGKKKKEQQQ-NGTHAFAKGA---YYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 190 ~~-------~~~~~~~~i~~i~gvd--~--~~~~~~~~~~~~~~-~~~~~~~~~i---l~vGrl~~~Kg~~~li~a~~~l 254 (467)
.. +..+..+.....+-+. + ..|+|+......+. ...+...+.. +|+||..-.||+..+++.-++.
T Consensus 129 ~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~nfqpp~~i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~ 208 (355)
T PF11440_consen 129 DNGWFSKVLMKELLPSKVSLFDRIKKFPMVFNFQPPMDINKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKI 208 (355)
T ss_dssp TTSHHHHTHHHHHS-SS--SSS-------EEE----B-HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHT
T ss_pred ccchHHHHHHHhhccccCchhhhhhhcceeeecCCcccHHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHh
Confidence 43 1133333322111111 1 12344333222222 2222223344 7999999999999999988887
Q ss_pred HhhcCCeEEEEEecCCC--HHHHHHH---------------HHhcCCeeEEecCCCCHH--HHHHhcCeEEecCC-----
Q 012256 255 QKELAGLEVDLYGNGED--FNQIQEA---------------AEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST----- 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~--~~~l~~~---------------~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~----- 310 (467)
.+. ++++-++-|-... .-.+.+. --.-+..+.++|..-..+ +.|+.+-+.+.-+.
T Consensus 209 lK~-~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y 287 (355)
T PF11440_consen 209 LKP-AGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKY 287 (355)
T ss_dssp TTT-TT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG
T ss_pred cCC-cchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHH
Confidence 654 7888888883211 1112211 000011356777776666 77888766654433
Q ss_pred -CCCCcHHHHHHHHcCC-eEEEeCCCCc--------cccccCCCEEe-eC--CHHHHHHHHHHHHh
Q 012256 311 -TDVVCTTTAEALAMGK-IVVCANHPSN--------DFFKQFPNCRT-YD--DRNGFVEATLKALA 363 (467)
Q Consensus 311 -~e~~~~~~lEAma~G~-PVV~t~~g~~--------e~v~~~~~g~~-~~--~~~~l~~~i~~~l~ 363 (467)
.+.+-.+-+|..|||. ||.-...|.+ .++... .|.+ +| |.++-.+.|.++-+
T Consensus 288 ~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~-~~~I~~De~dle~T~ekl~E~a~ 352 (355)
T PF11440_consen 288 LQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHP-YSAIYFDENDLESTVEKLIEVAN 352 (355)
T ss_dssp -SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS---S-EEE-TTSHHHHHHHHHHHHT
T ss_pred HHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccC-cceeEeccchHHHHHHHHHHHhc
Confidence 2457789999999999 5555444542 233333 3433 33 66666666666544
No 142
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.88 E-value=2.8 Score=39.62 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=112.5
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
...+.+.+.+++||+.+.-..+-+.-. .|. -..|.+....+...... +++ ..-+|+.+
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~s~~l~rv----afg-Lg~psIi~~D~ehA~~q----------------nkl-~~Pla~~i 130 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKHSPELPRV----AFG-LGIPSIIFVDNEHAEAQ----------------NKL-TLPLADVI 130 (346)
T ss_pred HHHHHHHHhhcCCceEeecCCcchhhH----Hhh-cCCceEEecCChhHHHH----------------hhc-chhhhhhe
Confidence 345788888999999987322111111 111 11366665544221111 222 33347878
Q ss_pred EEcCHhhHHh----hh--cccccccccC----CCccccchhhHHHhhcCCCCCCceEEEE------eccccccCHHHHHH
Q 012256 186 IRLSAATQEY----AN--SIICNVHGVN----PKFLEIGKKKKEQQQNGTHAFAKGAYYI------GKMVWSKGYKELLE 249 (467)
Q Consensus 186 i~~S~~~~~~----~~--~~i~~i~gvd----~~~~~~~~~~~~~~~~~~~~~~~~il~v------Grl~~~Kg~~~li~ 249 (467)
+.++...... -. .++...||+- ...|.|+..- .++.+...+.+.|++= .-....++.+.+.+
T Consensus 131 i~P~~~~~~~~~~~G~~p~~i~~~~giae~~~v~~f~pd~ev--lkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~ 208 (346)
T COG1817 131 ITPEAIDEEELLDFGADPNKISGYNGIAELANVYGFVPDPEV--LKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPD 208 (346)
T ss_pred ecccccchHHHHHhCCCccceecccceeEEeecccCCCCHHH--HHHcCCCCCCceEEEeeccccceeeccccchhhHHH
Confidence 8887543321 11 1233334443 2224544332 2222223323333321 11345677777888
Q ss_pred HHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH-HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeE
Q 012256 250 LLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 328 (467)
Q Consensus 250 a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~-~~~~~adv~v~ps~~e~~~~~~lEAma~G~PV 328 (467)
+++.+++. + .+++-.... .++..++.. +.+...-..+. .++-.|++.+-- -|.---||...|+|.
T Consensus 209 li~~l~k~-g---iV~ipr~~~---~~eife~~~--n~i~pk~~vD~l~Llyya~lvig~-----ggTMarEaAlLGtpa 274 (346)
T COG1817 209 LIKELKKY-G---IVLIPREKE---QAEIFEGYR--NIIIPKKAVDTLSLLYYATLVIGA-----GGTMAREAALLGTPA 274 (346)
T ss_pred HHHHHHhC-c---EEEecCchh---HHHHHhhhc--cccCCcccccHHHHHhhhheeecC-----CchHHHHHHHhCCce
Confidence 88887653 2 333332222 222222222 22222222222 567677777633 366678999999999
Q ss_pred EEeCCCCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 329 VCANHPSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 329 V~t~~g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
|++..|-. ++..+ .|+++. |+.+..+...+.+.++.
T Consensus 275 Is~~pGkll~vdk~lie--~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 275 ISCYPGKLLAVDKYLIE--KGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred EEecCCccccccHHHHh--cCceeecCCHHHHHHHHHHHhhchh
Confidence 99997622 23332 466665 77777777777776653
No 143
>PLN02562 UDP-glycosyltransferase
Probab=94.80 E-value=0.37 Score=49.08 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=76.8
Q ss_pred CceEEEEeccc---cccCHHHHHHHHHHHHhhcCCeEEEEEecCC---CHHHHHHHHHhcCCeeEEecCCCCHHHHHHhc
Q 012256 229 AKGAYYIGKMV---WSKGYKELLELLDDHQKELAGLEVDLYGNGE---DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDY 302 (467)
Q Consensus 229 ~~~il~vGrl~---~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~a 302 (467)
..+++..|.+. +.+-+..+..+++.+. ..+ +..+..+. ..+.+++.. ..++.+.+++++.+ +|...
T Consensus 274 svvyvsfGS~~~~~~~~~~~~l~~~l~~~g---~~f-iW~~~~~~~~~l~~~~~~~~---~~~~~v~~w~PQ~~-iL~h~ 345 (448)
T PLN02562 274 SVIYISFGSWVSPIGESNVRTLALALEASG---RPF-IWVLNPVWREGLPPGYVERV---SKQGKVVSWAPQLE-VLKHQ 345 (448)
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHCC---CCE-EEEEcCCchhhCCHHHHHHh---ccCEEEEecCCHHH-HhCCC
Confidence 45667778754 3344555555655432 222 33344321 111222222 23667778888875 77776
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccccc-CCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQ-FPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~-~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
++..+- +.+--++++||+++|+|+|+-.. +.+ ..+.+ ...|+-+. +.++++++|++++++
T Consensus 346 ~v~~fv--tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~ 413 (448)
T PLN02562 346 AVGCYL--THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMED 413 (448)
T ss_pred ccceEE--ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCC
Confidence 653333 34446789999999999999988 442 23433 35565554 889999999999976
No 144
>PLN02448 UDP-glycosyltransferase family protein
Probab=94.76 E-value=0.48 Score=48.48 Aligned_cols=125 Identities=17% Similarity=0.068 Sum_probs=75.9
Q ss_pred CceEEEEecccc--ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEE
Q 012256 229 AKGAYYIGKMVW--SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v 306 (467)
..+++..|.+.. .+-+..++++++.. +..++++..++ ...+.+.. +.++.+.+++++.+ +|...++..
T Consensus 275 ~vvyvsfGs~~~~~~~~~~~~~~~l~~~-----~~~~lw~~~~~-~~~~~~~~---~~~~~v~~w~pQ~~-iL~h~~v~~ 344 (459)
T PLN02448 275 SVLYVSLGSFLSVSSAQMDEIAAGLRDS-----GVRFLWVARGE-ASRLKEIC---GDMGLVVPWCDQLK-VLCHSSVGG 344 (459)
T ss_pred ceEEEeecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCc-hhhHhHhc---cCCEEEeccCCHHH-HhccCccce
Confidence 456677777632 22244455555432 45666554432 12233222 12566678887764 887777633
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c----ccccc-CCCEEee--------C-CHHHHHHHHHHHHhcC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANHPS-N----DFFKQ-FPNCRTY--------D-DRNGFVEATLKALAEE 365 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~----e~v~~-~~~g~~~--------~-~~~~l~~~i~~~l~~~ 365 (467)
+- +.+-.++++||+++|+|+|+-.... + ..+.+ -..|+-+ . +.+++++++++++.++
T Consensus 345 fv--tHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 345 FW--THCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred EE--ecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 32 3455679999999999999998843 2 23433 2345433 1 7799999999999865
No 145
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.74 E-value=0.24 Score=53.23 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=93.1
Q ss_pred CCCCceEEEEeccccccCHHH-HH---HHHHHHHhhc----CCeEEEEEecCCC--------HHHHHHHHHh------cC
Q 012256 226 HAFAKGAYYIGKMVWSKGYKE-LL---ELLDDHQKEL----AGLEVDLYGNGED--------FNQIQEAAEK------LK 283 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~-li---~a~~~l~~~~----~~~~l~i~G~g~~--------~~~l~~~~~~------~~ 283 (467)
.++...++++-|+...|...+ ++ +.+.++++.. ....+++.|.-.. ...+.+.++. .+
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 606 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVG 606 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcC
Confidence 556778889999999998888 54 4455555431 2367888884222 1122233332 11
Q ss_pred --CeeEEecCC--CCHHHHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc--CCCEEeeC-CHHH
Q 012256 284 --IVVRVYPGR--DHADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ--FPNCRTYD-DRNG 353 (467)
Q Consensus 284 --~~v~~~g~~--~~~~~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~--~~~g~~~~-~~~~ 353 (467)
+.|.|+..+ +-.+.++.+|||-.+-|+ .|..|+.=+=+|.-|.+-++|-.|.. |+.++ +.|++++- +.++
T Consensus 607 ~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~e 686 (797)
T cd04300 607 DKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEE 686 (797)
T ss_pred CceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHH
Confidence 257777654 444599999999999887 59999999999999999999999985 76665 67999997 7777
Q ss_pred HHHH
Q 012256 354 FVEA 357 (467)
Q Consensus 354 l~~~ 357 (467)
..+.
T Consensus 687 v~~~ 690 (797)
T cd04300 687 VEAL 690 (797)
T ss_pred HHHH
Confidence 5443
No 146
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=94.24 E-value=0.35 Score=51.33 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=88.3
Q ss_pred CCCCceEEEEeccccccCHHHHHHH----HHHHH-hhcCCeEEEEEecCCC--------HHHHHHHHHhc--CCeeEEec
Q 012256 226 HAFAKGAYYIGKMVWSKGYKELLEL----LDDHQ-KELAGLEVDLYGNGED--------FNQIQEAAEKL--KIVVRVYP 290 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~li~a----~~~l~-~~~~~~~l~i~G~g~~--------~~~l~~~~~~~--~~~v~~~g 290 (467)
.++..+++++=|+..+|...+.+.- ...++ ...|.+.+++.|.-.. ...+...++.. .++|.|+.
T Consensus 484 ~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~ 563 (750)
T COG0058 484 DPNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLP 563 (750)
T ss_pred CCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeC
Confidence 3567788999999999987766543 33333 2335576677784222 12233333332 34678887
Q ss_pred CCCC--HHHHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-cccc--cCCCEEeeC
Q 012256 291 GRDH--ADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFK--QFPNCRTYD 349 (467)
Q Consensus 291 ~~~~--~~~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~--~~~~g~~~~ 349 (467)
.++- .+.++.+|||-.+.|+ .|..|+.=+=||--|.+-|+|-.|.. |+.+ ++.||+++-
T Consensus 564 nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG 629 (750)
T COG0058 564 NYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFG 629 (750)
T ss_pred CCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeC
Confidence 6543 3388899999999877 49999999999999999999999996 7775 788999987
No 147
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=94.13 E-value=0.81 Score=46.87 Aligned_cols=148 Identities=19% Similarity=0.200 Sum_probs=98.6
Q ss_pred CceEEEEecc-ccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeE
Q 012256 229 AKGAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVF 305 (467)
Q Consensus 229 ~~~il~vGrl-~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~ 305 (467)
+...+..|+- ...||-+..++++.+. -+++-.|.+.......+-..++ =+|.++..+ .+++.+.||
T Consensus 277 ~~~AlVyGK~~~~w~~k~~~l~~l~~~----~eih~tV~~~~~~~~~~P~~V~-------NHG~l~~~ef~~lL~~akvf 345 (559)
T PF15024_consen 277 KNQALVYGKERYMWKGKEKYLDVLHKY----MEIHGTVYDEPQRPPNVPSFVK-------NHGILSGDEFQQLLRKAKVF 345 (559)
T ss_pred cceeEEEccchhhhcCcHHHHHHHHhh----cEEEEEeccCCCCCcccchhhh-------hcCcCCHHHHHHHHHhhhEe
Confidence 3356666764 3467888888888653 4566666654332223333333 257777777 999999999
Q ss_pred EecCC-CCCCcHHHHHHHHcCCeEEEeCC-CCc-----ccc-------------------ccCCCEEeeC--CHHHHHHH
Q 012256 306 LNPST-TDVVCTTTAEALAMGKIVVCANH-PSN-----DFF-------------------KQFPNCRTYD--DRNGFVEA 357 (467)
Q Consensus 306 v~ps~-~e~~~~~~lEAma~G~PVV~t~~-g~~-----e~v-------------------~~~~~g~~~~--~~~~l~~~ 357 (467)
|=... +| |-+-+||+|.|+|.|-... +.. +++ -..+.-+.++ |.+++.+|
T Consensus 346 iGlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~A 423 (559)
T PF15024_consen 346 IGLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAA 423 (559)
T ss_pred eecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHH
Confidence 95433 34 4478999999999998775 221 111 1223346666 99999999
Q ss_pred HHHHHhcCCCCccHHHHHcCCHHHHHHHHHHHHhc
Q 012256 358 TLKALAEEPALPTEAQRHQLSWESATERFLQVAEL 392 (467)
Q Consensus 358 i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~ 392 (467)
|++++.++..+.- -.+|+=+.+.+|+...++.
T Consensus 424 vk~il~~~v~Py~---P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 424 VKAILATPVEPYL---PYEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHHHhcCCCCcC---CcccCHHHHHHHHHHHHHh
Confidence 9999999754221 1467888889998887774
No 148
>PLN03007 UDP-glucosyltransferase family protein
Probab=94.13 E-value=0.79 Score=47.23 Aligned_cols=129 Identities=13% Similarity=0.031 Sum_probs=75.2
Q ss_pred CCceEEEEecccc--ccCHHHHHHHHHHHHhhcCCeEEEEEecCC----CH----HHHHHHHHhcCCeeEEecCCCCHHH
Q 012256 228 FAKGAYYIGKMVW--SKGYKELLELLDDHQKELAGLEVDLYGNGE----DF----NQIQEAAEKLKIVVRVYPGRDHADL 297 (467)
Q Consensus 228 ~~~~il~vGrl~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~----~~----~~l~~~~~~~~~~v~~~g~~~~~~~ 297 (467)
...+++..|.+.. .+.+..++++++.. ..++ +..++... .. +.+++... +.++.+.+++++. +
T Consensus 285 ~svvyvsfGS~~~~~~~~~~~~~~~l~~~---~~~f-lw~~~~~~~~~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~-~ 357 (482)
T PLN03007 285 DSVIYLSFGSVASFKNEQLFEIAAGLEGS---GQNF-IWVVRKNENQGEKEEWLPEGFEERTK--GKGLIIRGWAPQV-L 357 (482)
T ss_pred CceEEEeecCCcCCCHHHHHHHHHHHHHC---CCCE-EEEEecCCcccchhhcCCHHHHHHhc--cCCEEEecCCCHH-H
Confidence 3456777787643 33445555555433 2233 44455321 11 12222221 3367777999886 4
Q ss_pred HHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccccc-CCCEEee----------C--CHHHHHHHHH
Q 012256 298 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQ-FPNCRTY----------D--DRNGFVEATL 359 (467)
Q Consensus 298 ~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~-~~~g~~~----------~--~~~~l~~~i~ 359 (467)
+|..+++-.+- +.+--++++||+++|+|+|+-.. +.+ ..+.+ -..|+-+ + +.++++++++
T Consensus 358 iL~h~~v~~fv--tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~ 435 (482)
T PLN03007 358 ILDHQATGGFV--THCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVR 435 (482)
T ss_pred HhccCccceee--ecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHH
Confidence 88887663333 34446799999999999999988 432 12211 1223221 2 8899999999
Q ss_pred HHHhcC
Q 012256 360 KALAEE 365 (467)
Q Consensus 360 ~~l~~~ 365 (467)
+++.++
T Consensus 436 ~~m~~~ 441 (482)
T PLN03007 436 EVIVGE 441 (482)
T ss_pred HHhcCc
Confidence 999874
No 149
>PLN02210 UDP-glucosyl transferase
Probab=93.80 E-value=1.4 Score=45.06 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=74.5
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCC---CHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE---DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVF 305 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~ 305 (467)
..+++..|.+... .-+.+-+.+..+......+ +..++... +...+++..+ +.+..+.+++++.+ +|+.+.+.
T Consensus 270 svvyvsfGS~~~~-~~~~~~e~a~~l~~~~~~f-lw~~~~~~~~~~~~~~~~~~~--~~~g~v~~w~PQ~~-iL~h~~vg 344 (456)
T PLN02210 270 SVVYISFGSMLES-LENQVETIAKALKNRGVPF-LWVIRPKEKAQNVQVLQEMVK--EGQGVVLEWSPQEK-ILSHMAIS 344 (456)
T ss_pred ceEEEEecccccC-CHHHHHHHHHHHHhCCCCE-EEEEeCCccccchhhHHhhcc--CCCeEEEecCCHHH-HhcCcCcC
Confidence 4566677776432 2333333333333322233 34455321 2222333321 12334568888875 88887633
Q ss_pred EecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccccc-CCCEEee-------C-CHHHHHHHHHHHHhcC
Q 012256 306 LNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQ-FPNCRTY-------D-DRNGFVEATLKALAEE 365 (467)
Q Consensus 306 v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~-~~~g~~~-------~-~~~~l~~~i~~~l~~~ 365 (467)
.+- +.+--++++||+++|+|+|+-.. +.+ ..+.+ -+.|+.+ . +.+++++++++++.++
T Consensus 345 ~Fi--tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 345 CFV--THCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP 416 (456)
T ss_pred eEE--eeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc
Confidence 333 33444689999999999999988 332 24444 4567554 2 7889999999999763
No 150
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=93.71 E-value=0.82 Score=48.47 Aligned_cols=131 Identities=13% Similarity=0.072 Sum_probs=81.2
Q ss_pred CCCCceEEEEeccccccCHHHH----HHHHHHHHhh----cCCeEEEEEecCCC-----HHHH---HHHHHh------cC
Q 012256 226 HAFAKGAYYIGKMVWSKGYKEL----LELLDDHQKE----LAGLEVDLYGNGED-----FNQI---QEAAEK------LK 283 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~l----i~a~~~l~~~----~~~~~l~i~G~g~~-----~~~l---~~~~~~------~~ 283 (467)
.++...++++-|+..+|...+. ++-+.++++. .....+++.|.-.. ++-+ .+.++- .+
T Consensus 441 dp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~ 520 (713)
T PF00343_consen 441 DPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVG 520 (713)
T ss_dssp -TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTC
T ss_pred CcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhc
Confidence 4566788899999999988873 4555566543 12477999995322 1112 222221 11
Q ss_pred --CeeEEecCCCCH--HHHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc--CCCEEeeC-CHHH
Q 012256 284 --IVVRVYPGRDHA--DLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ--FPNCRTYD-DRNG 353 (467)
Q Consensus 284 --~~v~~~g~~~~~--~~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~--~~~g~~~~-~~~~ 353 (467)
++|.|+..++-. +.++..+||-.+.|+ .|..|+.-+=||.-|.+-++|-.|.. |+.+. ..|++++- +.++
T Consensus 521 ~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~e 600 (713)
T PF00343_consen 521 DRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEE 600 (713)
T ss_dssp CGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHH
T ss_pred cceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHH
Confidence 157777665433 389999999999887 59999999999999999999999985 66542 35788887 7766
Q ss_pred HHH
Q 012256 354 FVE 356 (467)
Q Consensus 354 l~~ 356 (467)
..+
T Consensus 601 v~~ 603 (713)
T PF00343_consen 601 VEE 603 (713)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 151
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.60 E-value=1.5 Score=41.37 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=62.8
Q ss_pred CCceEEEEeccccc-------cCHHHHHHHHHHHHhhcCCeEEEEEecC-----CCHHHHHHHHHhcCCeeEEecCCCCH
Q 012256 228 FAKGAYYIGKMVWS-------KGYKELLELLDDHQKELAGLEVDLYGNG-----EDFNQIQEAAEKLKIVVRVYPGRDHA 295 (467)
Q Consensus 228 ~~~~il~vGrl~~~-------Kg~~~li~a~~~l~~~~~~~~l~i~G~g-----~~~~~l~~~~~~~~~~v~~~g~~~~~ 295 (467)
.++.+++....... .+...+++.+..+.+..|+.+++|-=.- .....+.+... ..++.+...--..
T Consensus 116 ~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 193 (269)
T PF05159_consen 116 NKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN--LPNVVIIDDDVNL 193 (269)
T ss_pred CCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc--CCCeEEECCCCCH
Confidence 35566666665443 2566777788777777788887765421 11222222211 1144444333344
Q ss_pred HHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 296 DLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 296 ~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
.+++..||.++.-+ +.+-+||+.+|+|||+...+
T Consensus 194 ~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 194 YELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 48999999988664 56889999999999997654
No 152
>PLN02670 transferase, transferring glycosyl groups
Probab=93.47 E-value=2.1 Score=43.80 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=55.6
Q ss_pred eEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccCCCEEeeC--------CHH
Q 012256 286 VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQFPNCRTYD--------DRN 352 (467)
Q Consensus 286 v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~~~g~~~~--------~~~ 352 (467)
+.+.+++++.+ +|+...+..+- +.+--++++||+++|+|+|+-.. +.+ ..+...+.|+.++ +.+
T Consensus 341 ~vv~~W~PQ~~-IL~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e 417 (472)
T PLN02670 341 MIHVGWVPQVK-ILSHESVGGFL--THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSD 417 (472)
T ss_pred eEEeCcCCHHH-HhcCcccceee--ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHH
Confidence 55568888775 77776663333 34556789999999999999988 432 2444556675542 588
Q ss_pred HHHHHHHHHHhcC
Q 012256 353 GFVEATLKALAEE 365 (467)
Q Consensus 353 ~l~~~i~~~l~~~ 365 (467)
++.++|.+++.++
T Consensus 418 ~i~~av~~vm~~~ 430 (472)
T PLN02670 418 SVAESVRLAMVDD 430 (472)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999764
No 153
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.35 E-value=2.7 Score=40.56 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=65.0
Q ss_pred CCCceEEEEeccccc--cCHH---HHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcC---CeeEEecCCCCH-H-
Q 012256 227 AFAKGAYYIGKMVWS--KGYK---ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLK---IVVRVYPGRDHA-D- 296 (467)
Q Consensus 227 ~~~~~il~vGrl~~~--Kg~~---~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~---~~v~~~g~~~~~-~- 296 (467)
+...+.+.+|.-+.. -+-+ .+++.+..+.+..+ ..+.|..+.-...++++..++.- ..+.++..-... -
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~ 223 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYL 223 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHH
Confidence 335567788864432 2333 56666666666554 78898887555444333333221 245455332222 2
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
.+|..||.++.+.-. . .-+.||+++|+||..-..+.
T Consensus 224 ~~La~ad~i~VT~DS--v-SMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 224 GFLAAADAIVVTEDS--V-SMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHhCCEEEEcCcc--H-HHHHHHHHcCCCEEEecCCC
Confidence 999999999987432 2 24899999999999998853
No 154
>PLN03004 UDP-glycosyltransferase
Probab=93.33 E-value=1.4 Score=44.91 Aligned_cols=77 Identities=10% Similarity=-0.032 Sum_probs=56.6
Q ss_pred eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccc-cCCCEEee------C-CH
Q 012256 285 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFK-QFPNCRTY------D-DR 351 (467)
Q Consensus 285 ~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~-~~~~g~~~------~-~~ 351 (467)
++.+.+++++.+ +|+.+++..+- +.+--++++||+++|+|+|+-.. +.+ ..+. ....|... . +.
T Consensus 335 g~~v~~W~PQ~~-iL~H~~v~~Fv--TH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~ 411 (451)
T PLN03004 335 GMVVKSWAPQVP-VLNHKAVGGFV--THCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSS 411 (451)
T ss_pred cEEEEeeCCHHH-HhCCCccceEe--ccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCH
Confidence 567778988875 88888884433 34455799999999999999988 432 2443 33567544 2 78
Q ss_pred HHHHHHHHHHHhc
Q 012256 352 NGFVEATLKALAE 364 (467)
Q Consensus 352 ~~l~~~i~~~l~~ 364 (467)
++++++|++++++
T Consensus 412 e~l~~av~~vm~~ 424 (451)
T PLN03004 412 TEVEKRVQEIIGE 424 (451)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999975
No 155
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=93.31 E-value=0.46 Score=50.90 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=92.0
Q ss_pred CCCCceEEEEeccccccCHHH-HHHH---HHHHHhh----cCCeEEEEEecCCC--------HHHHHHHHHh------cC
Q 012256 226 HAFAKGAYYIGKMVWSKGYKE-LLEL---LDDHQKE----LAGLEVDLYGNGED--------FNQIQEAAEK------LK 283 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~-li~a---~~~l~~~----~~~~~l~i~G~g~~--------~~~l~~~~~~------~~ 283 (467)
.++....+++-|+...|...+ ++.. +.++++. .....+++.|.-.. ...+.+.++. .+
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~ 603 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVG 603 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhC
Confidence 455667888889999998888 5554 4455432 12357888884322 1112222322 11
Q ss_pred --CeeEEecCC--CCHHHHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc--CCCEEeeC-CHHH
Q 012256 284 --IVVRVYPGR--DHADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ--FPNCRTYD-DRNG 353 (467)
Q Consensus 284 --~~v~~~g~~--~~~~~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~--~~~g~~~~-~~~~ 353 (467)
+.|.|+..+ +-.+.++.+|||-.+.|+ .|..|+.=+=+|.-|.+-++|-.|.. |+.++ +.|++++- +.++
T Consensus 604 ~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~e 683 (794)
T TIGR02093 604 DKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEE 683 (794)
T ss_pred CceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHH
Confidence 257777654 444599999999999887 59999999999999999999999985 66665 67999997 7777
Q ss_pred HHHH
Q 012256 354 FVEA 357 (467)
Q Consensus 354 l~~~ 357 (467)
..+.
T Consensus 684 v~~~ 687 (794)
T TIGR02093 684 VEAL 687 (794)
T ss_pred HHHH
Confidence 6543
No 156
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=93.17 E-value=0.42 Score=51.15 Aligned_cols=130 Identities=16% Similarity=0.086 Sum_probs=91.0
Q ss_pred CCCCceEEEEeccccccCHHH-HHHH---HHHHHhhcC-----CeEEEEEecCCC-----H---HHHHHHHHhc------
Q 012256 226 HAFAKGAYYIGKMVWSKGYKE-LLEL---LDDHQKELA-----GLEVDLYGNGED-----F---NQIQEAAEKL------ 282 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~-li~a---~~~l~~~~~-----~~~l~i~G~g~~-----~---~~l~~~~~~~------ 282 (467)
.++...++++-|+...|...+ ++.. +.++++. | ...+++.|.-.. + ..+.+.++..
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v 604 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIREN-PQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLV 604 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhh
Confidence 455667778889999998887 6555 4444432 3 377888884322 1 1222333222
Q ss_pred --CCeeEEecCC--CCHHHHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc--CCCEEeeC-CHH
Q 012256 283 --KIVVRVYPGR--DHADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ--FPNCRTYD-DRN 352 (467)
Q Consensus 283 --~~~v~~~g~~--~~~~~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~--~~~g~~~~-~~~ 352 (467)
.+.|.|+..+ +-.+.++.+|||..+.|+ .|..|+.=+=+|.-|.+-++|-.|.. |+.++ +.|||++- +.+
T Consensus 605 ~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ 684 (798)
T PRK14985 605 GDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVE 684 (798)
T ss_pred CCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHH
Confidence 1257777654 444499999999999887 59999999999999999999999985 66664 67999997 777
Q ss_pred HHHH
Q 012256 353 GFVE 356 (467)
Q Consensus 353 ~l~~ 356 (467)
+..+
T Consensus 685 ev~~ 688 (798)
T PRK14985 685 QVKA 688 (798)
T ss_pred HHHH
Confidence 6544
No 157
>PLN02167 UDP-glycosyltransferase family protein
Probab=92.74 E-value=2.5 Score=43.51 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=73.3
Q ss_pred CceEEEEeccc--cccCHHHHHHHHHHHHhhcCCeEEEEEecCCC---------HHHHHHHHHhcCCeeEEecCCCCHHH
Q 012256 229 AKGAYYIGKMV--WSKGYKELLELLDDHQKELAGLEVDLYGNGED---------FNQIQEAAEKLKIVVRVYPGRDHADL 297 (467)
Q Consensus 229 ~~~il~vGrl~--~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---------~~~l~~~~~~~~~~v~~~g~~~~~~~ 297 (467)
..+++..|.+. ..+.+.+++.+++... ..+ +..++.... .+.+.+.+++ +..+.+++++.+
T Consensus 281 svvyvsfGS~~~~~~~~~~ela~~l~~~~---~~f-lw~~~~~~~~~~~~~~~lp~~~~er~~~---rg~v~~w~PQ~~- 352 (475)
T PLN02167 281 SVVFLCFGSLGSLPAPQIKEIAQALELVG---CRF-LWSIRTNPAEYASPYEPLPEGFMDRVMG---RGLVCGWAPQVE- 352 (475)
T ss_pred ceEEEeecccccCCHHHHHHHHHHHHhCC---CcE-EEEEecCcccccchhhhCChHHHHHhcc---CeeeeccCCHHH-
Confidence 45666777763 2344666666665442 223 334442111 1122222222 345568887764
Q ss_pred HHHhc--CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc---c--ccccCCCEEee----------C-CHHHHHHHH
Q 012256 298 IFHDY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN---D--FFKQFPNCRTY----------D-DRNGFVEAT 358 (467)
Q Consensus 298 ~~~~a--dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~---e--~v~~~~~g~~~----------~-~~~~l~~~i 358 (467)
+++.. +.|| +-+--++++||+++|+|+|+-.. +.+ . .+..-+.|+.+ . +.++++++|
T Consensus 353 iL~h~~vg~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av 428 (475)
T PLN02167 353 ILAHKAIGGFV----SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAV 428 (475)
T ss_pred HhcCcccCeEE----eeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHH
Confidence 77664 4566 33445689999999999999888 432 2 23444556543 1 778999999
Q ss_pred HHHHhcC
Q 012256 359 LKALAEE 365 (467)
Q Consensus 359 ~~~l~~~ 365 (467)
.+++.++
T Consensus 429 ~~~m~~~ 435 (475)
T PLN02167 429 RSLMDGE 435 (475)
T ss_pred HHHhcCC
Confidence 9999763
No 158
>PLN02207 UDP-glycosyltransferase
Probab=92.59 E-value=2.9 Score=42.80 Aligned_cols=127 Identities=12% Similarity=-0.028 Sum_probs=73.8
Q ss_pred CCceEEEEeccc--cccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--H----HHHHHHHHhcCCeeEEecCCCCHHHHH
Q 012256 228 FAKGAYYIGKMV--WSKGYKELLELLDDHQKELAGLEVDLYGNGED--F----NQIQEAAEKLKIVVRVYPGRDHADLIF 299 (467)
Q Consensus 228 ~~~~il~vGrl~--~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~----~~l~~~~~~~~~~v~~~g~~~~~~~~~ 299 (467)
...+++..|.+. ..+-+..+..+++.+. ..+ +..+.+... . +.+++ +...+..+.+++++.+ ++
T Consensus 275 ~sVVyvSfGS~~~~~~~q~~ela~~l~~~~---~~f-lW~~r~~~~~~~~~lp~~f~e---r~~~~g~i~~W~PQ~~-IL 346 (468)
T PLN02207 275 ASVVFLCFGSMGRLRGPLVKEIAHGLELCQ---YRF-LWSLRTEEVTNDDLLPEGFLD---RVSGRGMICGWSPQVE-IL 346 (468)
T ss_pred CcEEEEEeccCcCCCHHHHHHHHHHHHHCC---CcE-EEEEeCCCccccccCCHHHHh---hcCCCeEEEEeCCHHH-Hh
Confidence 345666667654 2334555666665442 233 444543111 1 22222 2233556668888875 67
Q ss_pred HhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccccc-CCCEEee---------C--CHHHHHHHHHHHH
Q 012256 300 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQ-FPNCRTY---------D--DRNGFVEATLKAL 362 (467)
Q Consensus 300 ~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~-~~~g~~~---------~--~~~~l~~~i~~~l 362 (467)
+...+..+- +.+--++++||+++|+|+|+-.. +.+ ..+.+ .+.|+-+ + +.+++.++|++++
T Consensus 347 ~H~~vg~Fv--TH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm 424 (468)
T PLN02207 347 AHKAVGGFV--SHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVM 424 (468)
T ss_pred cccccceee--ecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHH
Confidence 766553332 33445689999999999999988 432 23333 4456421 1 7789999999999
Q ss_pred hc
Q 012256 363 AE 364 (467)
Q Consensus 363 ~~ 364 (467)
++
T Consensus 425 ~~ 426 (468)
T PLN02207 425 NK 426 (468)
T ss_pred hc
Confidence 73
No 159
>PLN02173 UDP-glucosyl transferase family protein
Probab=92.46 E-value=2.4 Score=43.16 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=56.4
Q ss_pred CeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccC-CCEEeeC--------
Q 012256 284 IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQF-PNCRTYD-------- 349 (467)
Q Consensus 284 ~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~-~~g~~~~-------- 349 (467)
.++.+.+++++.+ +|+...+..+- +.+-.++++||+++|+|+|+-.. +.+ ..+.+. ..|+-+.
T Consensus 317 ~~~~i~~W~PQ~~-iL~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~ 393 (449)
T PLN02173 317 DKSLVLKWSPQLQ-VLSNKAIGCFM--THCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIA 393 (449)
T ss_pred CceEEeCCCCHHH-HhCCCccceEE--ecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcc
Confidence 3677779988764 88877654444 34556799999999999999988 432 344442 4554431
Q ss_pred CHHHHHHHHHHHHhcC
Q 012256 350 DRNGFVEATLKALAEE 365 (467)
Q Consensus 350 ~~~~l~~~i~~~l~~~ 365 (467)
+.+++++++++++.++
T Consensus 394 ~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 394 KREEIEFSIKEVMEGE 409 (449)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 6799999999999764
No 160
>PLN02555 limonoid glucosyltransferase
Probab=92.38 E-value=2.8 Score=43.12 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=54.2
Q ss_pred eeEEecCCCCHHHHHH--hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccC-CCEEee--------
Q 012256 285 VVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQF-PNCRTY-------- 348 (467)
Q Consensus 285 ~v~~~g~~~~~~~~~~--~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~-~~g~~~-------- 348 (467)
++.+.+++++.+ ++. ...+|| +.+--++++||+++|+|+|+-.. +.+ ..+.+. +.|+-+
T Consensus 338 ~g~v~~W~PQ~~-iL~H~~v~~Fv----tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~ 412 (480)
T PLN02555 338 KGKIVQWCPQEK-VLAHPSVACFV----THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENK 412 (480)
T ss_pred ceEEEecCCHHH-HhCCCccCeEE----ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccC
Confidence 566778888765 664 346666 34456799999999999999988 432 234443 567554
Q ss_pred C-CHHHHHHHHHHHHhcC
Q 012256 349 D-DRNGFVEATLKALAEE 365 (467)
Q Consensus 349 ~-~~~~l~~~i~~~l~~~ 365 (467)
. +.+++.++|+++++++
T Consensus 413 ~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 413 LITREEVAECLLEATVGE 430 (480)
T ss_pred cCcHHHHHHHHHHHhcCc
Confidence 1 6889999999999763
No 161
>PLN02554 UDP-glycosyltransferase family protein
Probab=92.31 E-value=2.3 Score=43.87 Aligned_cols=75 Identities=8% Similarity=0.043 Sum_probs=52.2
Q ss_pred eeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc---c--ccccCCCEEee--------
Q 012256 285 VVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN---D--FFKQFPNCRTY-------- 348 (467)
Q Consensus 285 ~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~---e--~v~~~~~g~~~-------- 348 (467)
++.+.+++++.+ +|+. .+.|| +.+--++++||+.+|+|+|+-.. +.+ . .++.-+.|+.+
T Consensus 343 ~g~v~~W~PQ~~-iL~H~~v~~Fv----tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~ 417 (481)
T PLN02554 343 IGKVIGWAPQVA-VLAKPAIGGFV----THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDL 417 (481)
T ss_pred CceEEeeCCHHH-HhCCcccCccc----ccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccc
Confidence 556668888764 7744 45565 34446789999999999999888 432 2 23444556443
Q ss_pred ------C-CHHHHHHHHHHHHhc
Q 012256 349 ------D-DRNGFVEATLKALAE 364 (467)
Q Consensus 349 ------~-~~~~l~~~i~~~l~~ 364 (467)
. +.+++.++|.+++++
T Consensus 418 ~~~~~~~~~~e~l~~av~~vm~~ 440 (481)
T PLN02554 418 LAGEMETVTAEEIERGIRCLMEQ 440 (481)
T ss_pred cccccCeEcHHHHHHHHHHHhcC
Confidence 2 789999999999963
No 162
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=92.18 E-value=2.7 Score=42.81 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=76.9
Q ss_pred CceEEEEeccc--cccCHHHHHHHHHHHHhhcCCeEEEEEecC---------CCHHH---HHHHHHhcCCeeEEecCCCC
Q 012256 229 AKGAYYIGKMV--WSKGYKELLELLDDHQKELAGLEVDLYGNG---------EDFNQ---IQEAAEKLKIVVRVYPGRDH 294 (467)
Q Consensus 229 ~~~il~vGrl~--~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g---------~~~~~---l~~~~~~~~~~v~~~g~~~~ 294 (467)
..+++..|.+. +.+-+.++..+++...+ .+ +..+.+. .+... .+...++.+.+..+.+++++
T Consensus 262 sVvyvsfGS~~~l~~~q~~ela~gL~~s~~---~f-lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ 337 (455)
T PLN02152 262 SVIYVSFGTMVELSKKQIEELARALIEGKR---PF-LWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQ 337 (455)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHcCC---Ce-EEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCH
Confidence 45666677754 34556666666665432 33 4445431 11001 12222233335566788876
Q ss_pred HHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccC-CCEEee------C-CHHHHHHHHHHH
Q 012256 295 ADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQF-PNCRTY------D-DRNGFVEATLKA 361 (467)
Q Consensus 295 ~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~-~~g~~~------~-~~~~l~~~i~~~ 361 (467)
. ++|+...+-.+- +.+-.++++||+.+|+|+|+-.. +.+ ..+.+. +.|+-. . +.+++++++.++
T Consensus 338 ~-~iL~h~~vg~fv--tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~v 414 (455)
T PLN02152 338 I-EVLRHRAVGCFV--THCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAV 414 (455)
T ss_pred H-HHhCCcccceEE--eeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHH
Confidence 6 488887764444 34455789999999999999888 432 233331 234332 1 779999999999
Q ss_pred HhcC
Q 012256 362 LAEE 365 (467)
Q Consensus 362 l~~~ 365 (467)
++++
T Consensus 415 m~~~ 418 (455)
T PLN02152 415 MEEK 418 (455)
T ss_pred Hhhh
Confidence 9754
No 163
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.02 E-value=1.1 Score=42.42 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=63.9
Q ss_pred eEEEEecccccc--CHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcC-Ce-eEEecCCCCHH--HHHHhcCe
Q 012256 231 GAYYIGKMVWSK--GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLK-IV-VRVYPGRDHAD--LIFHDYKV 304 (467)
Q Consensus 231 ~il~vGrl~~~K--g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~-~~-v~~~g~~~~~~--~~~~~adv 304 (467)
+++..|.-.+.| ..+.+.+.++.+.++ +++++++|..++.+..++..+..+ .+ +.+.|..+-.+ .+++.||+
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 444444433333 456778888877765 788999998777666666555442 23 33446554445 99999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 305 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 305 ~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
+|-+. + | .+-=|.|.|+|+|+--.+.
T Consensus 202 ~I~~D---s-g-~~HlA~a~~~p~i~l~g~~ 227 (279)
T cd03789 202 VVTND---S-G-PMHLAAALGTPTVALFGPT 227 (279)
T ss_pred EEeeC---C-H-HHHHHHHcCCCEEEEECCC
Confidence 99763 2 2 3444569999999877643
No 164
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=91.86 E-value=1.4 Score=43.60 Aligned_cols=177 Identities=9% Similarity=-0.000 Sum_probs=81.4
Q ss_pred cCEEEEcCHhhHHhhhcc--cc----cccccCCC--ccccchhh-HHHh-hcCCCCCCceEEEEeccccccCH------H
Q 012256 182 CHKVIRLSAATQEYANSI--IC----NVHGVNPK--FLEIGKKK-KEQQ-QNGTHAFAKGAYYIGKMVWSKGY------K 245 (467)
Q Consensus 182 ~d~vi~~S~~~~~~~~~~--i~----~i~gvd~~--~~~~~~~~-~~~~-~~~~~~~~~~il~vGrl~~~Kg~------~ 245 (467)
+|.+++.|+...+...+. .. .+.|.+-. .+...... .... ......++++|+|+-.+...... .
T Consensus 135 ~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~ 214 (369)
T PF04464_consen 135 YDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFF 214 (369)
T ss_dssp -SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS---
T ss_pred CcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccccccc
Confidence 599999998766544332 11 11455521 11211111 1112 22334556789999654332221 2
Q ss_pred HHH--HHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHH
Q 012256 246 ELL--ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 323 (467)
Q Consensus 246 ~li--~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma 323 (467)
..+ +.+. ....+++.+++-..-......... .....++.+...-.+..+++..||++|-= ++-++.|++.
T Consensus 215 ~~~~~~~l~--~~~~~~~~li~k~Hp~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~~aDiLITD-----ySSi~fD~~~ 286 (369)
T PF04464_consen 215 SDLDFEKLN--FLLKNNYVLIIKPHPNMKKKFKDF-KEDNSNIIFVSDNEDIYDLLAAADILITD-----YSSIIFDFLL 286 (369)
T ss_dssp -TT-HHHHH--HHHTTTEEEEE--SHHHHTT-----TT-TTTEEE-TT-S-HHHHHHT-SEEEES-----S-THHHHHGG
T ss_pred cccCHHHHH--HHhCCCcEEEEEeCchhhhchhhh-hccCCcEEECCCCCCHHHHHHhcCEEEEe-----chhHHHHHHH
Confidence 222 2332 223468877776532111111111 12222555554444445999999999832 3558999999
Q ss_pred cCCeEEEeCCCC------cc---ccccCCCEEeeCCHHHHHHHHHHHHhcCC
Q 012256 324 MGKIVVCANHPS------ND---FFKQFPNCRTYDDRNGFVEATLKALAEEP 366 (467)
Q Consensus 324 ~G~PVV~t~~g~------~e---~v~~~~~g~~~~~~~~l~~~i~~~l~~~~ 366 (467)
+++|||.-...- +. ...+..-|-++.+.++|.++|..+++++.
T Consensus 287 l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~~ 338 (369)
T PF04464_consen 287 LNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIENIIENPD 338 (369)
T ss_dssp GT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHHHHH
T ss_pred hCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHHhhhhCCH
Confidence 999999654321 11 12233346677799999999999887643
No 165
>PLN02764 glycosyltransferase family protein
Probab=91.85 E-value=5 Score=40.84 Aligned_cols=78 Identities=9% Similarity=-0.061 Sum_probs=54.1
Q ss_pred eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c----cccc-cCCCEEee------C-CH
Q 012256 285 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N----DFFK-QFPNCRTY------D-DR 351 (467)
Q Consensus 285 ~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~----e~v~-~~~~g~~~------~-~~ 351 (467)
.+.+.+++++.+ +++...+..+- +.+--++++||+++|+|+|+-.... + ..+. .-..|+-. . +.
T Consensus 318 G~v~~~W~PQ~~-vL~h~~v~~Fv--tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~ 394 (453)
T PLN02764 318 GVVWGGWVQQPL-ILSHPSVGCFV--SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSK 394 (453)
T ss_pred CcEEeCCCCHHH-HhcCcccCeEE--ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCH
Confidence 345558888875 77765453322 4455679999999999999998833 2 3443 33455542 2 78
Q ss_pred HHHHHHHHHHHhcC
Q 012256 352 NGFVEATLKALAEE 365 (467)
Q Consensus 352 ~~l~~~i~~~l~~~ 365 (467)
+++.++++++++++
T Consensus 395 e~i~~av~~vm~~~ 408 (453)
T PLN02764 395 ESLRDAINSVMKRD 408 (453)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999764
No 166
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=91.80 E-value=4.2 Score=41.79 Aligned_cols=124 Identities=10% Similarity=0.096 Sum_probs=72.7
Q ss_pred CceEEEEecccc--ccCHHHHHHHHHHHHhhcCCeEEEEEecCCC----H----HHHHHHHHhcCCeeEEecCCCCHHHH
Q 012256 229 AKGAYYIGKMVW--SKGYKELLELLDDHQKELAGLEVDLYGNGED----F----NQIQEAAEKLKIVVRVYPGRDHADLI 298 (467)
Q Consensus 229 ~~~il~vGrl~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~----~----~~l~~~~~~~~~~v~~~g~~~~~~~~ 298 (467)
..+++..|.+.. .+.+..+++++... ...+ ++.++...+ . ..+.+..+ +.++.+.+++++.+ +
T Consensus 284 svVyvsfGS~~~~~~~~~~ela~gL~~~---~~~f-lw~~~~~~~~~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~-v 356 (477)
T PLN02863 284 KVVYVCFGSQVVLTKEQMEALASGLEKS---GVHF-IWCVKEPVNEESDYSNIPSGFEDRVA--GRGLVIRGWAPQVA-I 356 (477)
T ss_pred ceEEEEeeceecCCHHHHHHHHHHHHhC---CCcE-EEEECCCcccccchhhCCHHHHHHhc--cCCEEecCCCCHHH-H
Confidence 446667777642 22355555555432 2233 444552211 1 12222222 22566679998764 7
Q ss_pred HHh--cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccc-ccCCCEEee-----C--CHHHHHHHHHHHHh
Q 012256 299 FHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFF-KQFPNCRTY-----D--DRNGFVEATLKALA 363 (467)
Q Consensus 299 ~~~--adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v-~~~~~g~~~-----~--~~~~l~~~i~~~l~ 363 (467)
|.. .++|| +.+--++++||+++|+|+|+-.. +.+ ..+ +.-+.|+-. . +.+++.+++.+++.
T Consensus 357 L~h~~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 357 LSHRAVGAFL----THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS 432 (477)
T ss_pred hcCCCcCeEE----ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh
Confidence 765 46666 44556799999999999999888 432 233 333566544 1 67899999998874
No 167
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.87 E-value=1.1 Score=34.82 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=50.8
Q ss_pred EEEEec-CCCHHHHHHHHHhcCCeeEEe---cCCCCHH----HHHHhcCeEEecCCCCC---CcHHHHHHHHcCCeEEEe
Q 012256 263 VDLYGN-GEDFNQIQEAAEKLKIVVRVY---PGRDHAD----LIFHDYKVFLNPSTTDV---VCTTTAEALAMGKIVVCA 331 (467)
Q Consensus 263 l~i~G~-g~~~~~l~~~~~~~~~~v~~~---g~~~~~~----~~~~~adv~v~ps~~e~---~~~~~lEAma~G~PVV~t 331 (467)
++|+|. ......+++.+++.|....++ ++..... ..+..+|++|++.-+=+ .-.+--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 567776 445678999999999987777 4443332 66777799998865432 233456677889999999
Q ss_pred CCC
Q 012256 332 NHP 334 (467)
Q Consensus 332 ~~g 334 (467)
+..
T Consensus 82 ~~~ 84 (97)
T PF10087_consen 82 RSR 84 (97)
T ss_pred CCC
Confidence 963
No 168
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.47 E-value=5.8 Score=38.31 Aligned_cols=126 Identities=16% Similarity=0.061 Sum_probs=74.4
Q ss_pred CceEEEEeccccccCH--HHHHHHHHHHHhhcCCeEEEEEecCC-CHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcC
Q 012256 229 AKGAYYIGKMVWSKGY--KELLELLDDHQKELAGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYK 303 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~--~~li~a~~~l~~~~~~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~ad 303 (467)
+.++++.|.=.+.|.+ +.+.+.+..+.++ +..+++.|.++ +.+..++..+..+ +..+.|..+-.+ .+++.||
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALP-GAVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCC-CCeecCCCCHHHHHHHHHcCC
Confidence 4456666653455554 5677777777543 57778775444 3444555544433 335567666555 9999999
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc-cccc-cCCC-EE-----eeC-CHHHHHHHHHHHH
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-DFFK-QFPN-CR-----TYD-DRNGFVEATLKAL 362 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~-~~~~-g~-----~~~-~~~~l~~~i~~~l 362 (467)
++|-. ++- .+-=|.|+|+|+|+--.+.. .... -+.+ .. +.+ ++++..+++.+++
T Consensus 257 l~I~~---DSg--p~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 257 AVVGV---DTG--LTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EEEeC---CCh--HHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 99965 333 34446788999998664332 1111 1111 11 122 7888888887653
No 169
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=90.43 E-value=0.33 Score=45.15 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=29.8
Q ss_pred eEEEEEeccCC-ccccccchhHHHH-HHhhhcCCccEEEEeeec
Q 012256 7 HIAIFTTASLP-WLTGTAVNPLFRA-AYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 7 ~I~iv~~~~~P-~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l 48 (467)
||++||..+.| ..+|+-...+..+ ++|++.| ++|++++|..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT--EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcC-CeEEEEEccc
Confidence 59999999999 6666555666555 9999999 9999999975
No 170
>PLN02208 glycosyltransferase family protein
Probab=90.26 E-value=7.7 Score=39.48 Aligned_cols=131 Identities=11% Similarity=-0.008 Sum_probs=76.5
Q ss_pred CCceEEEEeccccccCHHHHHHHHHHH-HhhcCCeEEEEEec-C--CC----HHHHHHHHHhcCCeeEEecCCCCHHHHH
Q 012256 228 FAKGAYYIGKMVWSKGYKELLELLDDH-QKELAGLEVDLYGN-G--ED----FNQIQEAAEKLKIVVRVYPGRDHADLIF 299 (467)
Q Consensus 228 ~~~~il~vGrl~~~Kg~~~li~a~~~l-~~~~~~~~l~i~G~-g--~~----~~~l~~~~~~~~~~v~~~g~~~~~~~~~ 299 (467)
...+++..|.+.. -.-+.+.+.+..+ ....| +.+++--+ + .. .+.+++..+ +.++.+.+++++.+ +|
T Consensus 251 ~sVvyvSfGS~~~-l~~~q~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~--~~g~~v~~W~PQ~~-iL 325 (442)
T PLN02208 251 KSVVFCSLGSQII-LEKDQFQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVK--GRGVVWGGWVQQPL-IL 325 (442)
T ss_pred CcEEEEecccccc-CCHHHHHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHh--cCCcEeeccCCHHH-Hh
Confidence 3455666677542 2344455544444 22233 43444311 1 11 112333332 23555668888875 77
Q ss_pred HhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccccc-CCCEEeeC-------CHHHHHHHHHHHHhcC
Q 012256 300 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQ-FPNCRTYD-------DRNGFVEATLKALAEE 365 (467)
Q Consensus 300 ~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~-~~~g~~~~-------~~~~l~~~i~~~l~~~ 365 (467)
+...+..+- +.+--++++||+++|+|+|+-.. +.+ ..+.+ ...|+.++ +.+++.++|+++++++
T Consensus 326 ~H~~v~~Fv--tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 326 DHPSIGCFV--NHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKD 402 (442)
T ss_pred cCCccCeEE--ccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCC
Confidence 777664444 34455789999999999999988 442 23333 45565552 6789999999999765
No 171
>PLN00164 glucosyltransferase; Provisional
Probab=90.26 E-value=7.8 Score=39.94 Aligned_cols=79 Identities=9% Similarity=-0.111 Sum_probs=54.1
Q ss_pred eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccc-ccCCCEEeeC---------
Q 012256 285 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFF-KQFPNCRTYD--------- 349 (467)
Q Consensus 285 ~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v-~~~~~g~~~~--------- 349 (467)
.+.+.+++++.+ +|...++..+- +.+--++++||+++|+|+|+-.. +.+ ..+ +.-..|+..+
T Consensus 340 g~~v~~w~PQ~~-iL~h~~vg~fv--tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~ 416 (480)
T PLN00164 340 GLVWPTWAPQKE-ILAHAAVGGFV--THCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFV 416 (480)
T ss_pred CeEEeecCCHHH-HhcCcccCeEE--eecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcC
Confidence 345558888775 77777653333 33445689999999999999888 442 233 3345665431
Q ss_pred CHHHHHHHHHHHHhcCC
Q 012256 350 DRNGFVEATLKALAEEP 366 (467)
Q Consensus 350 ~~~~l~~~i~~~l~~~~ 366 (467)
+.++++++|.+++.++.
T Consensus 417 ~~e~l~~av~~vm~~~~ 433 (480)
T PLN00164 417 EAAELERAVRSLMGGGE 433 (480)
T ss_pred cHHHHHHHHHHHhcCCc
Confidence 57899999999997643
No 172
>PLN00414 glycosyltransferase family protein
Probab=90.26 E-value=5.8 Score=40.41 Aligned_cols=130 Identities=6% Similarity=-0.042 Sum_probs=75.9
Q ss_pred CCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEec----CC----CHHHHHHHHHhcCCeeEEecCCCCHHHH
Q 012256 227 AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN----GE----DFNQIQEAAEKLKIVVRVYPGRDHADLI 298 (467)
Q Consensus 227 ~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~----g~----~~~~l~~~~~~~~~~v~~~g~~~~~~~~ 298 (467)
+...+++..|.+... .-+.+.+....|.....++ +.++-. +. ..+.+++..++. ...+.+++++.+ +
T Consensus 251 ~~sVvyvsfGS~~~~-~~~q~~e~a~gL~~s~~~F-lwvvr~~~~~~~~~~~lp~~f~~r~~~~--g~vv~~w~PQ~~-v 325 (446)
T PLN00414 251 PGSVVFCAFGTQFFF-EKDQFQEFCLGMELTGLPF-LIAVMPPKGSSTVQEALPEGFEERVKGR--GIVWEGWVEQPL-I 325 (446)
T ss_pred CCceEEEeecccccC-CHHHHHHHHHHHHHcCCCe-EEEEecCCCcccchhhCChhHHHHhcCC--CeEEeccCCHHH-H
Confidence 344556666775432 2234444444443333334 233322 11 112344444332 334458888775 7
Q ss_pred HHhc--CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccc-ccCCCEEee------C-CHHHHHHHHHHHHh
Q 012256 299 FHDY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFF-KQFPNCRTY------D-DRNGFVEATLKALA 363 (467)
Q Consensus 299 ~~~a--dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v-~~~~~g~~~------~-~~~~l~~~i~~~l~ 363 (467)
++.. +.|| +.+--++++||+++|+|+|+-.. +.+ ..+ +....|..+ . +.+++.+++++++.
T Consensus 326 L~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~ 401 (446)
T PLN00414 326 LSHPSVGCFV----NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMD 401 (446)
T ss_pred hcCCccceEE----ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhc
Confidence 7777 4466 34556799999999999999988 432 344 344566554 1 78899999999997
Q ss_pred cC
Q 012256 364 EE 365 (467)
Q Consensus 364 ~~ 365 (467)
++
T Consensus 402 ~~ 403 (446)
T PLN00414 402 KD 403 (446)
T ss_pred CC
Confidence 64
No 173
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=90.16 E-value=1.9 Score=39.89 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=58.3
Q ss_pred CCceEEEEeccccccCHHH--HHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCC-eeEEecCCCCHH--HHHH
Q 012256 228 FAKGAYYIGKMVWSKGYKE--LLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKI-VVRVYPGRDHAD--LIFH 300 (467)
Q Consensus 228 ~~~~il~vGrl~~~Kg~~~--li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~-~v~~~g~~~~~~--~~~~ 300 (467)
...++++.|.-.+.|.+.. ..+.+..+.+.. ..++++|...+ .+..++..+.... .+.+.|..+-.+ .+++
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 3456667776566666444 777777776553 78888887766 3334444443332 355557765555 9999
Q ss_pred hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 301 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
.||++|-+- + -.+-=|.|.|+|+|+--.+.
T Consensus 183 ~a~~~I~~D---t--g~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 183 RADLVIGND---T--GPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp TSSEEEEES---S--HHHHHHHHTT--EEEEESSS
T ss_pred cCCEEEecC---C--hHHHHHHHHhCCEEEEecCC
Confidence 999999763 2 24555788999999986543
No 174
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.99 E-value=1.9 Score=42.11 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=69.8
Q ss_pred CceEEEEe-ccccccCH--HHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcC
Q 012256 229 AKGAYYIG-KMVWSKGY--KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYK 303 (467)
Q Consensus 229 ~~~il~vG-rl~~~Kg~--~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~ad 303 (467)
+.+++..| .-...|.+ +.+.+.+..+.+++ .++++.|+..+.+..++..+.++..+.+.|..+-.+ .++..||
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~ 253 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGAD 253 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCC
Confidence 34555666 44455554 46777777777664 789999988777777777777664444667776666 9999999
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
++|-+.. -.+-=|.|.|+|+|+--.+.
T Consensus 254 l~I~~DS-----g~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 254 LVIGNDS-----GPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred EEEccCC-----hHHHHHHHcCCCEEEEECCC
Confidence 9996642 23555789999999977533
No 175
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=89.91 E-value=4.8 Score=43.33 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=97.3
Q ss_pred CCCceEEEEeccccccCHHHHHHHHHHHHhhcCC----eEEEEEec-----CCCHHHHHHH----HHhc----C----Ce
Q 012256 227 AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN-----GEDFNQIQEA----AEKL----K----IV 285 (467)
Q Consensus 227 ~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~-----g~~~~~l~~~----~~~~----~----~~ 285 (467)
.++.+++-+-+++.-||...=+.++.++..++|+ +.++.+.. +++.++++.. .++. + ..
T Consensus 274 ~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~p 353 (732)
T KOG1050|consen 274 KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQP 353 (732)
T ss_pred cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccce
Confidence 3566888888999999998888899888877765 33444442 2221222222 1111 1 12
Q ss_pred eEEe-cCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcC----CeEEEeCC-CCccccccCCCEEeeC--CHHHHH
Q 012256 286 VRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG----KIVVCANH-PSNDFFKQFPNCRTYD--DRNGFV 355 (467)
Q Consensus 286 v~~~-g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G----~PVV~t~~-g~~e~v~~~~~g~~~~--~~~~l~ 355 (467)
++++ -.++..+ +++..+|+++..+..+|..++.+|+.+|. ++.|.+.. |..+..+++- .++. |.++++
T Consensus 354 V~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~a--ivvnpw~~~~~~ 431 (732)
T KOG1050|consen 354 VHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDAA--IVVNPWDGDEFA 431 (732)
T ss_pred EEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccccC--EEECCcchHHHH
Confidence 3333 4455555 88999999999999999999999999885 56777777 7667765542 4444 999999
Q ss_pred HHHHHHHhcCCC
Q 012256 356 EATLKALAEEPA 367 (467)
Q Consensus 356 ~~i~~~l~~~~~ 367 (467)
.+|..++.....
T Consensus 432 ~~i~~al~~s~~ 443 (732)
T KOG1050|consen 432 ILISKALTMSDE 443 (732)
T ss_pred HHHHHHhhcCHH
Confidence 999999988665
No 176
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.65 E-value=2.8 Score=40.80 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=63.3
Q ss_pred ceEEEEec-cccccC--HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCe-eEEecCCCCHH--HHHHhcC
Q 012256 230 KGAYYIGK-MVWSKG--YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV-VRVYPGRDHAD--LIFHDYK 303 (467)
Q Consensus 230 ~~il~vGr-l~~~Kg--~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~-v~~~g~~~~~~--~~~~~ad 303 (467)
.+++..|. ..+.|. .+.+.+.+..+.+. +.++++.|...+.+..++..+..+.. +.+.|..+-.+ .+++.||
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~ 253 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAK 253 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCC
Confidence 34455554 334554 44777777777543 57889999877766666655544333 23446665555 9999999
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
++|-.- +- .+-=|.|.|+|+|+--.+.
T Consensus 254 l~I~~D---SG--p~HlAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 254 AVVTND---SG--LMHVAAALNRPLVALYGST 280 (334)
T ss_pred EEEeeC---CH--HHHHHHHcCCCEEEEECCC
Confidence 999653 22 3445779999999865533
No 177
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=88.98 E-value=11 Score=38.71 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=55.9
Q ss_pred eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccc-ccCCCEEeeC------CHH
Q 012256 285 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFF-KQFPNCRTYD------DRN 352 (467)
Q Consensus 285 ~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v-~~~~~g~~~~------~~~ 352 (467)
++.+.+++++.+ ++....+..+- +.+--++++||+.+|+|+|+-.. +.+ ..+ +....|...+ +.+
T Consensus 339 g~vv~~W~PQ~~-iL~h~~vg~Fi--tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~ 415 (481)
T PLN02992 339 GFVVPSWAPQAE-ILAHQAVGGFL--THCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRS 415 (481)
T ss_pred CEEEeecCCHHH-HhCCcccCeeE--ecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHH
Confidence 566679988765 77777663332 34556799999999999999998 432 243 3445565441 778
Q ss_pred HHHHHHHHHHhcC
Q 012256 353 GFVEATLKALAEE 365 (467)
Q Consensus 353 ~l~~~i~~~l~~~ 365 (467)
+++++|.+++.++
T Consensus 416 ~l~~av~~vm~~~ 428 (481)
T PLN02992 416 KIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999874
No 178
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=88.04 E-value=0.62 Score=44.59 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCC-eEEEeCC
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANH 333 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~-PVV~t~~ 333 (467)
+.|+.+..++.|.-......-++|||++|| |||.++.
T Consensus 232 ~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~ 269 (302)
T PF03016_consen 232 ELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDD 269 (302)
T ss_pred HhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCc
Confidence 789999999998766668889999999999 8888775
No 179
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=87.59 E-value=3.5 Score=35.34 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=44.9
Q ss_pred cCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCH
Q 012256 112 VIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSA 190 (467)
Q Consensus 112 ~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 190 (467)
......+|+|++.+...+.-+..... ..-. |.+..+|.+-..|...... ..... -.+..+..-..||.|+..|+
T Consensus 54 ~~~~~~~dll~aTsmldLa~l~gL~p--~l~~~p~ilYFHENQl~YP~~~~~--~rd~~-~~~~ni~saLaAD~v~FNS~ 128 (168)
T PF12038_consen 54 IPLSHSYDLLFATSMLDLATLRGLRP--DLANVPKILYFHENQLAYPVSPGQ--ERDFQ-YGMNNIYSALAADRVVFNSA 128 (168)
T ss_pred cccccCCCEEEeeccccHHHHHhhcc--CCCCCCEEEEEecCcccCCCCCCc--ccccc-HHHHHHHHHHhceeeeecch
Confidence 34456789999987766655521111 1123 8999999987777632211 11122 22333334556899999996
Q ss_pred hhH
Q 012256 191 ATQ 193 (467)
Q Consensus 191 ~~~ 193 (467)
.-.
T Consensus 129 ~nr 131 (168)
T PF12038_consen 129 FNR 131 (168)
T ss_pred hhH
Confidence 633
No 180
>PLN02534 UDP-glycosyltransferase
Probab=87.05 E-value=13 Score=38.46 Aligned_cols=76 Identities=9% Similarity=-0.019 Sum_probs=51.8
Q ss_pred eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccc-ccCCCEEee----------
Q 012256 285 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFF-KQFPNCRTY---------- 348 (467)
Q Consensus 285 ~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v-~~~~~g~~~---------- 348 (467)
++.+.+++++. +++...++..+- +.+-.++++||+++|+|+|+-.. +.. ..+ +.-+.|+-+
T Consensus 345 g~~v~~w~pq~-~iL~h~~v~~fv--tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~ 421 (491)
T PLN02534 345 GLLIKGWAPQV-LILSHPAIGGFL--THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGD 421 (491)
T ss_pred CeeccCCCCHH-HHhcCCccceEE--ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccc
Confidence 55666898885 478777773332 44556799999999999999988 332 122 222333211
Q ss_pred -------CCHHHHHHHHHHHHh
Q 012256 349 -------DDRNGFVEATLKALA 363 (467)
Q Consensus 349 -------~~~~~l~~~i~~~l~ 363 (467)
-+.+++++++++++.
T Consensus 422 ~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 422 EERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccCccCHHHHHHHHHHHhc
Confidence 167899999999986
No 181
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=83.88 E-value=52 Score=33.32 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEec-------CC-CHHHHHHHHHhcCC--eeEEe-cCCCCHH--HHHHhcCeEEecCCC
Q 012256 245 KELLELLDDHQKELAGLEVDLYGN-------GE-DFNQIQEAAEKLKI--VVRVY-PGRDHAD--LIFHDYKVFLNPSTT 311 (467)
Q Consensus 245 ~~li~a~~~l~~~~~~~~l~i~G~-------g~-~~~~l~~~~~~~~~--~v~~~-g~~~~~~--~~~~~adv~v~ps~~ 311 (467)
..+.+++..+.++ +.+++++-. ++ |....++..+.+.. ++++. ......+ .+++.||++|-.-..
T Consensus 260 ~~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH 337 (426)
T PRK10017 260 KAFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH 337 (426)
T ss_pred HHHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch
Confidence 3445666666554 444444442 22 22223444444332 33443 4444455 899999999866432
Q ss_pred CCCcHHHHHHHHcCCeEEEeCCCC--ccccccCC-CEEeeC----CHHHHHHHHHHHHhcCCC
Q 012256 312 DVVCTTTAEALAMGKIVVCANHPS--NDFFKQFP-NCRTYD----DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 312 e~~~~~~lEAma~G~PVV~t~~g~--~e~v~~~~-~g~~~~----~~~~l~~~i~~~l~~~~~ 367 (467)
+++=|++.|+|+|+-.-.. ..++.+-. ..++.+ +.+++.+.+.+++++.+.
T Consensus 338 -----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~ 395 (426)
T PRK10017 338 -----SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPA 395 (426)
T ss_pred -----HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHH
Confidence 5888999999999988843 24444321 124333 778999999999988543
No 182
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=83.29 E-value=11 Score=36.92 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=60.6
Q ss_pred ceEEEEec-cccccC--HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCe-----eEEecCCCCHH--HHH
Q 012256 230 KGAYYIGK-MVWSKG--YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV-----VRVYPGRDHAD--LIF 299 (467)
Q Consensus 230 ~~il~vGr-l~~~Kg--~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~-----v~~~g~~~~~~--~~~ 299 (467)
.+++..|. ..+.|. .+.+.+.+..+.+ .++++++.|..++.+..++..+..+.. +.+.|..+-.+ .++
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali 259 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILI 259 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHH
Confidence 34455554 234454 4456666666653 367889999777766556554443321 33446655455 999
Q ss_pred HhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 300 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 300 ~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
+.|+++|-. ++- .+-=|.|.|+|+|+--.+
T Consensus 260 ~~a~l~I~n---DTG--p~HlAaA~g~P~valfGp 289 (348)
T PRK10916 260 AACKAIVTN---DSG--LMHVAAALNRPLVALYGP 289 (348)
T ss_pred HhCCEEEec---CCh--HHHHHHHhCCCEEEEECC
Confidence 999999955 332 345578899999976543
No 183
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=82.62 E-value=9.7 Score=36.82 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEEE-ecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHH
Q 012256 243 GYKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA 319 (467)
Q Consensus 243 g~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~l 319 (467)
-.+.+.+.+..+.++ +.++++. |...+.+..++..+... .+.+.|..+-.+ .+++.||++|-.- +- .+-
T Consensus 195 p~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~~~-~~~l~g~~sL~elaali~~a~l~I~nD---SG--p~H 266 (322)
T PRK10964 195 PEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEGFP-YVEVLPKLSLEQVARVLAGAKAVVSVD---TG--LSH 266 (322)
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHccCC-cceecCCCCHHHHHHHHHhCCEEEecC---Cc--HHH
Confidence 344677777777543 5677775 64445444555444322 455667766555 9999999999653 22 455
Q ss_pred HHHHcCCeEEEeCCCC
Q 012256 320 EALAMGKIVVCANHPS 335 (467)
Q Consensus 320 EAma~G~PVV~t~~g~ 335 (467)
=|.|+|+|+|+--.+.
T Consensus 267 lA~A~g~p~valfGpt 282 (322)
T PRK10964 267 LTAALDRPNITLYGPT 282 (322)
T ss_pred HHHHhCCCEEEEECCC
Confidence 5789999999877644
No 184
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=82.30 E-value=47 Score=31.62 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEec--CCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHH
Q 012256 244 YKELLELLDDHQKELAGLEVDLYGN--GEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA 319 (467)
Q Consensus 244 ~~~li~a~~~l~~~~~~~~l~i~G~--g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~l 319 (467)
...+.+++..+.++. +.+++++.. ..|....++....+.....+....+..+ ++++.||++|-..+. .++
T Consensus 190 ~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-----~~I 263 (298)
T TIGR03609 190 LLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH-----ALI 263 (298)
T ss_pred HHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH-----HHH
Confidence 556777777776542 455555553 3444545555555443334443333333 789999988866543 578
Q ss_pred HHHHcCCeEEEeCCC
Q 012256 320 EALAMGKIVVCANHP 334 (467)
Q Consensus 320 EAma~G~PVV~t~~g 334 (467)
=|+++|+|+|+-...
T Consensus 264 ~A~~~gvP~i~i~y~ 278 (298)
T TIGR03609 264 LAAAAGVPFVALSYD 278 (298)
T ss_pred HHHHcCCCEEEeecc
Confidence 899999999987553
No 185
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=78.13 E-value=17 Score=35.76 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=60.5
Q ss_pred CceEEEEeccccccC--HHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCC-e-eEEecCCCCHH--HHHH
Q 012256 229 AKGAYYIGKMVWSKG--YKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKI-V-VRVYPGRDHAD--LIFH 300 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg--~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~-~-v~~~g~~~~~~--~~~~ 300 (467)
..+++..|.-.+.|. .+.+.+.+..+.+. +.++++.|...+ ....++..+.... . +.+.|..+-.+ .+++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 445666666445554 44677777776543 577888875322 3333444433221 2 33457666555 9999
Q ss_pred hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 301 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
.||++|-. ++- .+-=|.|+|+|+|+--.+.
T Consensus 262 ~a~l~v~n---DSG--p~HlAaA~g~P~v~lfGpt 291 (352)
T PRK10422 262 HAQLFIGV---DSA--PAHIAAAVNTPLICLFGAT 291 (352)
T ss_pred hCCEEEec---CCH--HHHHHHHcCCCEEEEECCC
Confidence 99999955 333 3444678899999876543
No 186
>PLN03015 UDP-glucosyl transferase
Probab=77.26 E-value=54 Score=33.65 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=51.0
Q ss_pred eEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccc-ccCCCEEee-------C-CH
Q 012256 286 VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFF-KQFPNCRTY-------D-DR 351 (467)
Q Consensus 286 v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v-~~~~~g~~~-------~-~~ 351 (467)
+.+.+++++.+ ++....+..+- +.+--++++||+++|+|+|+-.. +.+ ..+ +....|+-+ . +.
T Consensus 337 l~v~~W~PQ~~-vL~h~~vg~fv--tH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~ 413 (470)
T PLN03015 337 LVVTQWAPQVE-ILSHRSIGGFL--SHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGR 413 (470)
T ss_pred eEEEecCCHHH-HhccCccCeEE--ecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCH
Confidence 45568888875 66665553333 33445689999999999999988 432 223 333455433 1 77
Q ss_pred HHHHHHHHHHHh
Q 012256 352 NGFVEATLKALA 363 (467)
Q Consensus 352 ~~l~~~i~~~l~ 363 (467)
++++++|+++++
T Consensus 414 e~i~~~v~~lm~ 425 (470)
T PLN03015 414 EEVASLVRKIVA 425 (470)
T ss_pred HHHHHHHHHHHc
Confidence 899999999996
No 187
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=76.72 E-value=26 Score=36.07 Aligned_cols=129 Identities=18% Similarity=0.111 Sum_probs=68.5
Q ss_pred ceEEEEeccc-----cccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhc-CCeeEEecCCCCHHHHHHhc-
Q 012256 230 KGAYYIGKMV-----WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKL-KIVVRVYPGRDHADLIFHDY- 302 (467)
Q Consensus 230 ~~il~vGrl~-----~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~~~v~~~g~~~~~~~~~~~a- 302 (467)
.+++..|.+. +.+-...+..+++.+ +++.|+..=..++...+.+...+. .-+|.+.+++++.+-++..-
T Consensus 279 vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~----~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~ 354 (496)
T KOG1192|consen 279 VVYISFGSMVNSADLPEEQKKELAKALESL----QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPA 354 (496)
T ss_pred eEEEECCcccccccCCHHHHHHHHHHHHhC----CCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCc
Confidence 3455556654 234455555555543 455544433322212111111110 11566678999987442222
Q ss_pred -CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----c-ccccCCCEEeeC---CHHHHHHHHHHHHhcCC
Q 012256 303 -KVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----D-FFKQFPNCRTYD---DRNGFVEATLKALAEEP 366 (467)
Q Consensus 303 -dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e-~v~~~~~g~~~~---~~~~l~~~i~~~l~~~~ 366 (467)
.+|| + .-|+ .+++||+.+|+|+|+... +.+ . +...+..+.... +...+.+++..+++++.
T Consensus 355 v~~Fv--T-HgG~-nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~ 424 (496)
T KOG1192|consen 355 VGGFV--T-HGGW-NSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEE 424 (496)
T ss_pred CcEEE--E-CCcc-cHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChH
Confidence 3444 1 2233 456999999999998776 652 2 334444444433 33347888888887754
No 188
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=76.59 E-value=17 Score=31.13 Aligned_cols=68 Identities=7% Similarity=-0.018 Sum_probs=48.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCC-CCHHHHHHhcCeEEecC
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLNPS 309 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~v~ps 309 (467)
.=.+...|+|+..+....-+.-+++-||+ |...+-+.+++.|..|...|.- .-++++-++||-|+.-.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~-DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDA-DFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILG 156 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccH-hHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCC
Confidence 44588889999987544456645555555 5566666777889999999843 34458999999998653
No 189
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=76.44 E-value=3.6 Score=33.67 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 295 ADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 295 ~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
.++++..+||.|--|..+..---+-.++.+|+|+|...+|-
T Consensus 61 l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 61 LEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred HHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 34888889999988876666666777889999999988876
No 190
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=74.91 E-value=8.1 Score=34.47 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=24.0
Q ss_pred CCCceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecCC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLSL 50 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~ 50 (467)
|| |++.++.-+ ....+..+ +.|++.| ++|++++|.=.+
T Consensus 1 M~---ILlTNDDGi------~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MR---ILLTNDDGI------DAPGIRALAKALSALG-HDVVVVAPDSEQ 39 (196)
T ss_dssp SE---EEEE-SS-T------TSHHHHHHHHHHTTTS-SEEEEEEESSST
T ss_pred Ce---EEEEcCCCC------CCHHHHHHHHHHHhcC-CeEEEEeCCCCC
Confidence 66 988887753 21233333 8887777 899999997444
No 191
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=74.83 E-value=28 Score=33.94 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=59.4
Q ss_pred ceEEEEecccccc--CHHHHHHHHHHHHhhcCCeEEEEEecCC--CHHHHHHHHHhcCC-e-eEEecCCCCHH--HHHHh
Q 012256 230 KGAYYIGKMVWSK--GYKELLELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLKI-V-VRVYPGRDHAD--LIFHD 301 (467)
Q Consensus 230 ~~il~vGrl~~~K--g~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~-~-v~~~g~~~~~~--~~~~~ 301 (467)
.+++..|.-.+.| ..+...+.+..+.+. +.+++++|... +.+..++..+..+. . +.+.|..+-.+ .+++.
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 3455555533444 455666777666543 57788888543 22334444333332 2 23457666555 99999
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
||++|-. ++. .+-=|.|+|+|+|+--.+
T Consensus 261 a~l~Vs~---DSG--p~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 261 ARLFIGV---DSV--PMHMAAALGTPLVALFGP 288 (344)
T ss_pred CCEEEec---CCH--HHHHHHHcCCCEEEEECC
Confidence 9999965 333 355578899999986543
No 192
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.14 E-value=15 Score=38.25 Aligned_cols=150 Identities=12% Similarity=0.010 Sum_probs=93.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEEEec-CCCHHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhcCeEEecCCCCC
Q 012256 240 WSKGYKELLELLDDHQKELAGLEVDLYGN-GEDFNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~-g~~~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~adv~v~ps~~e~ 313 (467)
-.|=-...++.+..+.++-|+-.|++.-- ---...++..+++.|+ ++.|..-....+ .-++.+||.+-+...-|
T Consensus 768 LyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnG 847 (966)
T KOG4626|consen 768 LYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNG 847 (966)
T ss_pred hhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCC
Confidence 35666778888888888889987777652 1113678888888888 455554444444 77788899997766544
Q ss_pred CcHHHHHHHHcCCeEEEeCCCC-------ccccccCCCE-EeeCCHHHHHHHHHHHHhcCCC--CccHHH---H---HcC
Q 012256 314 VCTTTAEALAMGKIVVCANHPS-------NDFFKQFPNC-RTYDDRNGFVEATLKALAEEPA--LPTEAQ---R---HQL 377 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~g~-------~e~v~~~~~g-~~~~~~~~l~~~i~~~l~~~~~--~~~~~~---~---~~~ 377 (467)
- .+-+|.+-+|+|+|+-.... .-...-| .| ++..+.++..+.-.++-.+.+. .++.+. | --|
T Consensus 848 h-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~G-l~hliak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splf 925 (966)
T KOG4626|consen 848 H-TTGMDVLWAGVPMVTMPGETLASRVAASLLTALG-LGHLIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLF 925 (966)
T ss_pred c-ccchhhhccCCceeecccHHHHHHHHHHHHHHcc-cHHHHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCcc
Confidence 3 45678899999999876532 1122222 23 4555888887766665554332 222211 1 345
Q ss_pred CHHHHHHHHHHHHh
Q 012256 378 SWESATERFLQVAE 391 (467)
Q Consensus 378 sw~~~~~~~~~~~~ 391 (467)
+-...+..++..|.
T Consensus 926 d~~q~~~~LE~~y~ 939 (966)
T KOG4626|consen 926 DTKQYAKGLERLYL 939 (966)
T ss_pred CchHHHHHHHHHHH
Confidence 55556666655554
No 193
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=71.26 E-value=23 Score=28.89 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=39.5
Q ss_pred HHHHhcCeEEecCCCCCC--cHHH---HHHHHcCCeEEEeCCCC-ccccccCC--CEEeeCCHHHHHHHHHHHH
Q 012256 297 LIFHDYKVFLNPSTTDVV--CTTT---AEALAMGKIVVCANHPS-NDFFKQFP--NCRTYDDRNGFVEATLKAL 362 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~--~~~~---lEAma~G~PVV~t~~g~-~e~v~~~~--~g~~~~~~~~l~~~i~~~l 362 (467)
.++..||++|.- +.|-| -++. --|.|.|+|.|.-..+. ..-+++-. .-.+++++++..+.+..++
T Consensus 68 ~li~~aDvVVvr-FGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 68 TLIEKADVVVVR-FGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHhhCCEEEEE-echHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 678889998854 22211 1223 34589999999988754 23222211 1134458888888887765
No 194
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=69.14 E-value=33 Score=28.12 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=37.5
Q ss_pred HHHHhcCeEEecCCCCCC--cHHH---HHHHHcCCeEEEeCCCC-ccccccCCCE--EeeCCHHHHHHHHHHHH
Q 012256 297 LIFHDYKVFLNPSTTDVV--CTTT---AEALAMGKIVVCANHPS-NDFFKQFPNC--RTYDDRNGFVEATLKAL 362 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~--~~~~---lEAma~G~PVV~t~~g~-~e~v~~~~~g--~~~~~~~~l~~~i~~~l 362 (467)
.++..||+.|.- +.|-| -++. --|.|.|+|.|.-..+. ..-+++-.+. -+++++++..+.+..++
T Consensus 71 ~li~~aDvvVvr-FGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 71 KLIEKADVVIAL-FGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHhhCCEEEEE-echHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 577788988854 12211 1223 34579999999887754 2222221111 33448888877777654
No 195
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=69.09 E-value=21 Score=31.71 Aligned_cols=91 Identities=13% Similarity=0.004 Sum_probs=55.4
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhcCeEEecCCCCCC
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVV 314 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~ 314 (467)
.|=...|..|+..+.+-. .-+++++|..+. ...+++.++..+. +-+++|+.--.. .-+..=|+.+.... -.-
T Consensus 43 ~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp-~~~ 120 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDP-RAD 120 (196)
T ss_pred HHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECC-ccc
Confidence 344455555555554433 457999998765 3446666766665 347786653222 22333356555432 223
Q ss_pred cHHHHHHHHcCCeEEEeCC
Q 012256 315 CTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 315 ~~~~lEAma~G~PVV~t~~ 333 (467)
..++.||..+|.|+|+--.
T Consensus 121 ~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 121 HQALKEASEVGIPIVALCD 139 (196)
T ss_pred cHHHHHHHHcCCCEEEEee
Confidence 5689999999999998665
No 196
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=63.08 E-value=20 Score=36.80 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=48.8
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCC-eEEEeCC--CCccccccC-CCEEeeCCHHHHHHHHHHHHhcC
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANH--PSNDFFKQF-PNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~-PVV~t~~--g~~e~v~~~-~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
+.++.|..++.|.-.+...-.++||+..|| |||-++. ..-+.+.+. .-++.++ .+++-+.|.+.|...
T Consensus 339 ~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~~i 410 (464)
T KOG1021|consen 339 EGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILLSI 410 (464)
T ss_pred HHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHHhc
Confidence 899999999999988888889999999999 9999998 222444443 2234444 555555556655543
No 197
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=62.71 E-value=2e+02 Score=29.95 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=43.5
Q ss_pred CeEEEEEecCCC----HHHHHHHHHhcCC--eeEEe-cCCCCHH------HHHHhcCeEEecCCC-----CCCcHHHHHH
Q 012256 260 GLEVDLYGNGED----FNQIQEAAEKLKI--VVRVY-PGRDHAD------LIFHDYKVFLNPSTT-----DVVCTTTAEA 321 (467)
Q Consensus 260 ~~~l~i~G~g~~----~~~l~~~~~~~~~--~v~~~-g~~~~~~------~~~~~adv~v~ps~~-----e~~~~~~lEA 321 (467)
.+++-++|+-.+ ...+.+.....+. ++.+. -+++.++ +.+..+|.+++|.-. ++.-.++-.|
T Consensus 289 ~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a 368 (525)
T TIGR00337 289 EVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGVEGKILAIKYA 368 (525)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcChHHHHHHH
Confidence 478888996432 2233333333343 33332 2233322 346778988888532 3333356666
Q ss_pred HHcCCeEEEeCCCCc
Q 012256 322 LAMGKIVVCANHPSN 336 (467)
Q Consensus 322 ma~G~PVV~t~~g~~ 336 (467)
...|.|++..=.|.+
T Consensus 369 ~e~~iP~LGIClG~Q 383 (525)
T TIGR00337 369 RENNIPFLGICLGMQ 383 (525)
T ss_pred HHcCCCEEEEcHHHH
Confidence 778999998877753
No 198
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=61.13 E-value=60 Score=27.49 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=56.5
Q ss_pred eEEEEeccccccCHHHHHHHH------HHHHhhcCCeEEEE-EecCC-C-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh
Q 012256 231 GAYYIGKMVWSKGYKELLELL------DDHQKELAGLEVDL-YGNGE-D-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD 301 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~------~~l~~~~~~~~l~i-~G~g~-~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~ 301 (467)
.++.+|.-. ++.||.++ ..+.++. =.+++| +|.|. - .+......+..++.+..+.+-+.-.+.++.
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G-~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLSEEFLQELQKRG-FTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEecccc----HHHHHHHHcCHHHHHHHHHcC-ccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 566777532 77777543 4444432 234444 77662 1 122222223445555555555665689999
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
||+++- .+-.-+++|.+..|+|.|.--.
T Consensus 81 AdlVIs----HAGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 81 ADLVIS----HAGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred ccEEEe----cCCcchHHHHHHcCCCEEEEeC
Confidence 999983 3345579999999999876544
No 199
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=58.99 E-value=39 Score=30.28 Aligned_cols=91 Identities=14% Similarity=0.054 Sum_probs=54.8
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhcCeEEecCCCCCC
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVV 314 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~ 314 (467)
.|=...|..|+.-+... ..-+++++|..+. ...+++.+...+. .-+++|+.--.. +-+..=|+.+..... .-
T Consensus 49 ~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~-~~ 126 (204)
T PRK04020 49 RKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPR-GD 126 (204)
T ss_pred HHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCc-cc
Confidence 44455556666655543 3456888998765 3456677777665 236776653322 222223554443322 22
Q ss_pred cHHHHHHHHcCCeEEEeCC
Q 012256 315 CTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 315 ~~~~lEAma~G~PVV~t~~ 333 (467)
..++.||.-+|.|+|+--.
T Consensus 127 ~~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCD 145 (204)
T ss_pred HHHHHHHHHhCCCEEEEEe
Confidence 6789999999999999655
No 200
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=58.89 E-value=43 Score=29.04 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCC-CHHHHHHhcCeEEecCCC
Q 012256 248 LELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRD-HADLIFHDYKVFLNPSTT 311 (467)
Q Consensus 248 i~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~-~~~~~~~~adv~v~ps~~ 311 (467)
++.++.+.....+.+++|+|.|.. ...+-+...+.+.++.+..+.. +..+.+..||++|..+-.
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCC
Confidence 344444332345679999999875 3435555556666777766643 233899999999987654
No 201
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=58.59 E-value=18 Score=31.29 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=20.8
Q ss_pred hhhhccCCCCCCCEEEecCCccccc
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTW 131 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~ 131 (467)
.++.+.+++.+||+|++..|.....
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~ 103 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQV 103 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhh
Confidence 4688889999999999998875555
No 202
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.58 E-value=1.4e+02 Score=27.12 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=35.5
Q ss_pred hcCeE-EecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHH
Q 012256 301 DYKVF-LNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKAL 362 (467)
Q Consensus 301 ~adv~-v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l 362 (467)
.+|.+ +.|...+...-.+-++...|.|||..+.+ +.........+-.|..++...+.+.+
T Consensus 55 ~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~--~~~~~~~~~~v~~d~~~~G~~~a~~l 115 (257)
T PF13407_consen 55 GVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD--EAPDSPRAAYVGTDNYEAGKLAAEYL 115 (257)
T ss_dssp TESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST--HHTTSTSSEEEEE-HHHHHHHHHHHH
T ss_pred cCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc--ccccccceeeeeccHHHHHHHHHHHH
Confidence 34655 45666666777788889999999998887 22222222333335555555444443
No 203
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=56.57 E-value=43 Score=30.98 Aligned_cols=93 Identities=12% Similarity=0.022 Sum_probs=54.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhcCeEEecCCCCC
Q 012256 240 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~adv~v~ps~~e~ 313 (467)
-.|=...|..|+..+..-...-.++++|..+. ...+++.++..+. .-+|+|+.--.. ..+..=|++|...- -.
T Consensus 51 L~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp-~~ 129 (249)
T PTZ00254 51 LAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDP-RT 129 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCC-Cc
Confidence 34445555556555543222345788887765 3446666666664 236676643222 22333355554432 22
Q ss_pred CcHHHHHHHHcCCeEEEeCC
Q 012256 314 VCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~ 333 (467)
-..++.||-.+|.|||+--.
T Consensus 130 d~qAI~EA~~lnIPvIal~D 149 (249)
T PTZ00254 130 DHQAIREASYVNIPVIALCD 149 (249)
T ss_pred chHHHHHHHHhCCCEEEEec
Confidence 34689999999999999665
No 204
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=56.02 E-value=15 Score=29.73 Aligned_cols=50 Identities=28% Similarity=0.486 Sum_probs=30.9
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec--CCCCCc
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL--SLIDQK 54 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l--~~~~~v 54 (467)
+|+.+.|+.+.+.|. ...-...+..+..+.+.|..+|++++||+ +.|++.
T Consensus 46 ~g~dv~iiqs~~~~~-nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~ 97 (116)
T PF13793_consen 46 RGKDVFIIQSTSPPV-NDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRR 97 (116)
T ss_dssp TTSEEEEE---SSSH-HHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSS
T ss_pred cCCceEEEEecCCch-hHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccC
Confidence 467788888877542 22133334444889999988999999997 455554
No 205
>PRK04531 acetylglutamate kinase; Provisional
Probab=55.67 E-value=60 Score=32.54 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=67.8
Q ss_pred CceEEEEec-cccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEe-c-CCCCHH--HHHHhcC
Q 012256 229 AKGAYYIGK-MVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY-P-GRDHAD--LIFHDYK 303 (467)
Q Consensus 229 ~~~il~vGr-l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~-g-~~~~~~--~~~~~ad 303 (467)
+..++-+|. +-. ...+.+++.+..+.+..-. -+++-|.|+. +.+..+..|+..++. | ++.+++ +....+-
T Consensus 37 ~~~VIKiGG~~l~-~~~~~l~~dla~L~~~G~~-~VlVHGggpq---I~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l 111 (398)
T PRK04531 37 RFAVIKVGGAVLR-DDLEALASSLSFLQEVGLT-PIVVHGAGPQ---LDAELDAAGIEKETVNGLRVTSPEALAIVRKVF 111 (398)
T ss_pred cEEEEEEChHHhh-cCHHHHHHHHHHHHHCCCc-EEEEECCCHH---HHHHHHHcCCCcEEECCEecCCHHHHHHHHHHH
Confidence 445666655 322 3578888888887664322 3666687755 456666788877777 3 345555 2222211
Q ss_pred eEEecCCCCCCcHHHHHHHHcCC-eEEEeCCCCccccccCCCEEeeC-CHHHHHHHHHHHHhcC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGK-IVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAEE 365 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~-PVV~t~~g~~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~ 365 (467)
.-++....+ .+-+++..|. |||+ ..|. ...|-+++ |.++.|.++...|.-+
T Consensus 112 ~~vn~~lv~----~I~~~L~~g~IPVls-plg~------~~~G~~~NvnaD~vA~~LA~aL~a~ 164 (398)
T PRK04531 112 QRSNLDLVE----AVESSLRAGSIPVIA-SLGE------TPSGQILNINADVAANELVSALQPY 164 (398)
T ss_pred HHHHHHHHH----HHHHHHHCCCEEEEe-CcEE------CCCCcEEEECHHHHHHHHHHHcCCC
Confidence 111111111 1556778887 5554 3331 12455566 8888888888877643
No 206
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=55.42 E-value=89 Score=29.94 Aligned_cols=74 Identities=19% Similarity=0.165 Sum_probs=44.2
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH------HHHH-----hc---CeEEecCCCCCCcHHHHHHHH
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD------LIFH-----DY---KVFLNPSTTDVVCTTTAEALA 323 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~------~~~~-----~a---dv~v~ps~~e~~~~~~lEAma 323 (467)
.|+..++|.|.-.-....+...+.+|..+.=.|+.+..+ ..++ .. .++|.-.+. ++-+++|+|-
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwD--y~~~~~e~~k 152 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWD--YADALMELMK 152 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccc--cHHHHHHHHh
Confidence 677744444444445667777778887777777766655 2332 22 344433322 2228888888
Q ss_pred cCC-eEEEeCC
Q 012256 324 MGK-IVVCANH 333 (467)
Q Consensus 324 ~G~-PVV~t~~ 333 (467)
-|. ||+.++.
T Consensus 153 ~~~~p~~~~n~ 163 (337)
T COG2247 153 EGIVPVILKNT 163 (337)
T ss_pred cCcceeEeccc
Confidence 887 7777765
No 207
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=55.40 E-value=13 Score=30.56 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=17.7
Q ss_pred EEEEEeccCCccccccchhHHHH-HHhhhcC
Q 012256 8 IAIFTTASLPWLTGTAVNPLFRA-AYLAKDG 37 (467)
Q Consensus 8 I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G 37 (467)
|+|++... ++.++++.-+ ++|.++|
T Consensus 1 Ili~~~Gt-----~Ghv~P~lala~~L~~rG 26 (139)
T PF03033_consen 1 ILIATGGT-----RGHVYPFLALARALRRRG 26 (139)
T ss_dssp EEEEEESS-----HHHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCC-----hhHHHHHHHHHHHHhccC
Confidence 45555443 4477888766 9999999
No 208
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=54.83 E-value=2e+02 Score=27.56 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=71.6
Q ss_pred cCEEEEcCHh---hHHhhh-cccccccccCCCccccchhhHH---HhhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSAA---TQEYAN-SIICNVHGVNPKFLEIGKKKKE---QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~~---~~~~~~-~~i~~i~gvd~~~~~~~~~~~~---~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.+++=+.. ..++.+ ..+++||+-+.....|.+.... ..+....-....|.|+|-+...+=...++.++..+
T Consensus 96 ~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~~v~~Sl~~~~a~~ 175 (301)
T TIGR00670 96 SDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYGRTVHSLAEALTRF 175 (301)
T ss_pred CCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCCcHHHHHHHHHHHc
Confidence 5877665522 223322 4678889887555666543322 11222223457899999664445466677776653
Q ss_pred HhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
++++.+++.... ..++.+.+++.|..+.+ .++.++.+..|||+...+.
T Consensus 176 -----g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~---~~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 176 -----GVEVYLISPEELRMPKEILEELKAKGIKVRE---TESLEEVIDEADVLYVTRI 225 (301)
T ss_pred -----CCEEEEECCccccCCHHHHHHHHHcCCEEEE---ECCHHHHhCCCCEEEECCc
Confidence 578999995332 23454555555545443 2455588999999877654
No 209
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=54.40 E-value=5 Score=37.27 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=23.2
Q ss_pred cceEeeecCC-CCCchHHHHHHhCCCCCCC
Q 012256 436 SRRAFGAIPG-SLHPDEELCKELGLVTPMS 464 (467)
Q Consensus 436 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 464 (467)
.+..|+..|| ++....+++++.++|.||+
T Consensus 34 ~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~ 63 (247)
T PF05116_consen 34 PEILFVYVTGRSLESVLRLLREYNLPQPDY 63 (247)
T ss_dssp CGEEEEEE-SS-HHHHHHHHHHCT-EE-SE
T ss_pred CCceEEEECCCCHHHHHHHHHhCCCCCCCE
Confidence 4789999999 9999999999999999985
No 210
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=54.29 E-value=69 Score=26.69 Aligned_cols=66 Identities=17% Similarity=0.047 Sum_probs=43.8
Q ss_pred ccccCHHHH--HHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH-HHHHhcCeE
Q 012256 239 VWSKGYKEL--LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVF 305 (467)
Q Consensus 239 ~~~Kg~~~l--i~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~-~~~~~adv~ 305 (467)
...|+.|.- ++++....+...+.-+++-||++. ..+-+.+++.|.+|.+.+.-.... ++...||=|
T Consensus 78 ~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df-~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f 146 (149)
T cd06167 78 SGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDF-VPLVERLRELGKRVIVVGFEAKTSRELRKAADRF 146 (149)
T ss_pred CcccCccHHHHHHHHHHhhhcCCCEEEEEECCccH-HHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence 355666554 478877776656676666777644 445555667798999888763333 888888844
No 211
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=54.01 E-value=82 Score=23.66 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=44.1
Q ss_pred CceEEEEec-cccccCHHHHHHHHHHHHhhcC---CeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH-HHHHhcC
Q 012256 229 AKGAYYIGK-MVWSKGYKELLELLDDHQKELA---GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYK 303 (467)
Q Consensus 229 ~~~il~vGr-l~~~Kg~~~li~a~~~l~~~~~---~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~-~~~~~ad 303 (467)
++++++... ..+ .....+..+.++.++++ ++.++.+...++.++.++..++.+..-..+..-.... .+....+
T Consensus 2 K~~ll~fwa~~c~--~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 2 KPVLLYFWASWCP--PCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp SEEEEEEE-TTSH--HHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CEEEEEEECCCCH--HHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 445555443 333 24455555555555555 8999999987888888888888754322222222212 6777766
Q ss_pred eEEecC
Q 012256 304 VFLNPS 309 (467)
Q Consensus 304 v~v~ps 309 (467)
+--.|+
T Consensus 80 i~~iP~ 85 (95)
T PF13905_consen 80 INGIPT 85 (95)
T ss_dssp -TSSSE
T ss_pred CCcCCE
Confidence 655554
No 212
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=51.57 E-value=2.6e+02 Score=27.90 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=64.6
Q ss_pred cccCHHHHHHHHHHHHhh------cCCeEEEEEecC---CCHHHHHHHHHhcCCeeEE-e-cCCCCHH-HHHHhcCeEEe
Q 012256 240 WSKGYKELLELLDDHQKE------LAGLEVDLYGNG---EDFNQIQEAAEKLKIVVRV-Y-PGRDHAD-LIFHDYKVFLN 307 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~------~~~~~l~i~G~g---~~~~~l~~~~~~~~~~v~~-~-g~~~~~~-~~~~~adv~v~ 307 (467)
...|++..++++-..... .++-.+-|+|.- .+..+++++.++.|+++.. + +.-.-++ .-+..|.+-|.
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv 213 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLV 213 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEE
Confidence 456788887776544311 123457788852 2568899999999997654 3 3444444 44555555554
Q ss_pred cCCCCCCcHHHHHHHH--cCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhc
Q 012256 308 PSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 364 (467)
Q Consensus 308 ps~~e~~~~~~lEAma--~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~ 364 (467)
.+. .++..+.+.|. .|.|.+.... +-.++.+++.+.|.+++..
T Consensus 214 ~~~--~~~~~~a~~L~~r~GiP~~~~~p------------~G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 214 HCS--RSMNYLAREMEERYGIPYMEVNF------------YGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred ECh--HHHHHHHHHHHHhhCCCEEEecC------------CcHHHHHHHHHHHHHHhCC
Confidence 332 23455555553 7899975321 0112566777777776654
No 213
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=51.42 E-value=1.2e+02 Score=26.88 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=43.3
Q ss_pred CeEEEEEecCCCHH-HHHHHHHhcCC---eeEEecCC-CCHHHH-------------------------HHhcCeEEecC
Q 012256 260 GLEVDLYGNGEDFN-QIQEAAEKLKI---VVRVYPGR-DHADLI-------------------------FHDYKVFLNPS 309 (467)
Q Consensus 260 ~~~l~i~G~g~~~~-~l~~~~~~~~~---~v~~~g~~-~~~~~~-------------------------~~~adv~v~ps 309 (467)
+-+++++|..+... .+++.++..+. +-+++|+. ...... ...=|++|...
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~ 135 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLD 135 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeC
Confidence 45677888765533 34445554443 23566554 333211 12236766654
Q ss_pred CCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 310 TTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 310 ~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..+ -..++.||--+|.|+|+--.
T Consensus 136 ~~~-~~~ai~Ea~~l~IP~I~i~D 158 (193)
T cd01425 136 PRK-EHQAIREASKLGIPVIAIVD 158 (193)
T ss_pred Ccc-chHHHHHHHHcCCCEEEEec
Confidence 332 26789999999999999776
No 214
>PRK05380 pyrG CTP synthetase; Validated
Probab=51.07 E-value=3.1e+02 Score=28.61 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=45.6
Q ss_pred CCeEEEEEecCCC----HHH----HHHHHHhcCCee--EEecC--CCC--HHHHHHhcCeEEecCCC-----CCCcHHHH
Q 012256 259 AGLEVDLYGNGED----FNQ----IQEAAEKLKIVV--RVYPG--RDH--ADLIFHDYKVFLNPSTT-----DVVCTTTA 319 (467)
Q Consensus 259 ~~~~l~i~G~g~~----~~~----l~~~~~~~~~~v--~~~g~--~~~--~~~~~~~adv~v~ps~~-----e~~~~~~l 319 (467)
..+++-++|.--+ ... ++......+..+ .+... +.. ..+.+..+|-+|+|.-+ ++.-..+-
T Consensus 287 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~ 366 (533)
T PRK05380 287 GEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIEGKILAIR 366 (533)
T ss_pred CceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccccccHHHHHH
Confidence 4688999996322 122 322233334333 33322 222 22678899999988532 22233566
Q ss_pred HHHHcCCeEEEeCCCCc
Q 012256 320 EALAMGKIVVCANHPSN 336 (467)
Q Consensus 320 EAma~G~PVV~t~~g~~ 336 (467)
+|...|+|+++.=.|.+
T Consensus 367 ~a~e~~iPiLGIClGmQ 383 (533)
T PRK05380 367 YARENNIPFLGICLGMQ 383 (533)
T ss_pred HHHHCCCcEEEEchHHH
Confidence 67788999999888774
No 215
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=50.01 E-value=18 Score=30.96 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEee
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIP 46 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p 46 (467)
+++++|+|+ |++......++.|.+.| .+|+++.|
T Consensus 11 l~~~~vlVv---------GGG~va~rka~~Ll~~g-a~V~VIsp 44 (157)
T PRK06719 11 LHNKVVVII---------GGGKIAYRKASGLKDTG-AFVTVVSP 44 (157)
T ss_pred cCCCEEEEE---------CCCHHHHHHHHHHHhCC-CEEEEEcC
Confidence 456778887 33435555678899999 44444433
No 216
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=49.91 E-value=97 Score=22.46 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=36.5
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecC-CCH-HHHHHHHHhcCCeeE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG-EDF-NQIQEAAEKLKIVVR 287 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g-~~~-~~l~~~~~~~~~~v~ 287 (467)
...|++.|.-+ ......+-+++.++.++.|+.. +|-|.. .-- .-.++.+++.+..+.
T Consensus 3 g~rVli~GgR~-~~D~~~i~~~Ld~~~~~~~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 3 GMRVLITGGRD-WTDHELIWAALDKVHARHPDMV-LVHGGAPKGADRIAARWARERGVPVI 61 (71)
T ss_pred CCEEEEEECCc-cccHHHHHHHHHHHHHhCCCEE-EEECCCCCCHHHHHHHHHHHCCCeeE
Confidence 34566666543 4478889999999998888874 555544 222 335556666666443
No 217
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.72 E-value=2e+02 Score=26.10 Aligned_cols=62 Identities=11% Similarity=-0.077 Sum_probs=33.8
Q ss_pred hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcC
Q 012256 301 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
.+|.++..+..+...-.+-++...|.|+|.-+....+ .....+..++.+....+...++...
T Consensus 55 ~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~---~~~~~v~~d~~~~~~~~~~~l~~~g 116 (268)
T cd06289 55 GVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREVAG---APFDYVGPDNAAGARLATEHLISLG 116 (268)
T ss_pred CCCEEEEeCCCCccHHHHHHHHhcCCCEEEEeccCCC---CCCCEEeecchHHHHHHHHHHHHCC
Confidence 3576665543332212456677889999998753221 1112233445556566666666553
No 218
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=49.43 E-value=79 Score=21.57 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=40.0
Q ss_pred eEEEEEec--CCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEe
Q 012256 261 LEVDLYGN--GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 331 (467)
Q Consensus 261 ~~l~i~G~--g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t 331 (467)
+.+.+.|. +.+...+++++...|-.+. ..++ ..++.+|.++.... .....|...|+|||..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~--~~~~------~~~thvI~~~~~~~--~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVT--SSVS------KKTTHVIVGSDAGP--KKLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEe--cccc------CCceEEEECCCCCc--hHHHHHHHcCCeEecH
Confidence 56888886 5778889999988775332 2211 34566666643322 1278888999999865
No 219
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=49.39 E-value=1.9e+02 Score=25.65 Aligned_cols=104 Identities=9% Similarity=-0.004 Sum_probs=61.8
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHH--hcCeEEecCCCCC----CcHHHHHHHH---cCC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPSTTDV----VCTTTAEALA---MGK 326 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~--~adv~v~ps~~e~----~~~~~lEAma---~G~ 326 (467)
+.+++|+.+.+. ...++...+..+ ...+.+.....+ +.+. ..|++++-....+ -|..+++.+. .++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~-~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~ 81 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIE-WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSL 81 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCC
Confidence 457777777655 344565555433 223334333333 3333 3588876533322 5677777664 345
Q ss_pred eEEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 327 IVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 327 PVV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
|||.-.. +.. +.+..|..|++.. +++++.++|..++..
T Consensus 82 ~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred cEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 6665433 332 3567778888877 899999999988765
No 220
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.52 E-value=44 Score=26.09 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=43.3
Q ss_pred EEEEecCCC----HHHHHHHHHhcCCeeEEe-cCCCCHHHHHHhcCeEEecCCCCCCcHHHHH--HHHcCCeEEEeC
Q 012256 263 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAE--ALAMGKIVVCAN 332 (467)
Q Consensus 263 l~i~G~g~~----~~~l~~~~~~~~~~v~~~-g~~~~~~~~~~~adv~v~ps~~e~~~~~~lE--Ama~G~PVV~t~ 332 (467)
++++|.|.. -+.+++.+++.|+++.+. ......++....+|+++.....- |=..-++ +-..|.||...+
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~-~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMA-SYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHH-HHHHHHHHHhhhcCCCEEEeC
Confidence 566777754 355788888888888776 44444447788899888764321 1112222 334578987766
No 221
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=47.63 E-value=74 Score=26.18 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=35.4
Q ss_pred cccCHHHHH--HHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecC-CCCHHHHHHhcCeEEe
Q 012256 240 WSKGYKELL--ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLN 307 (467)
Q Consensus 240 ~~Kg~~~li--~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~-~~~~~~~~~~adv~v~ 307 (467)
..|+.|..| +++....+..++.-+++.||++-...++ .+++.|.+|.+.+. -...+++.+.||-|+.
T Consensus 75 ~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~-~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~ 144 (146)
T PF01936_consen 75 GKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVR-KLRERGKRVIVVGAEDSASEALRSAADEFIS 144 (146)
T ss_dssp -S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHH-HHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred ccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHH-HHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence 456766655 6777665554567677777765544444 45678888998884 2223389999998863
No 222
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=47.18 E-value=26 Score=31.24 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=20.9
Q ss_pred CCCCCceEEEEEeccCCccccccch-hHHHHHHhhhcC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDG 37 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~-~~~~~~~L~~~G 37 (467)
|.|+|+||++-.+.. .| +.. ....++.|.+.|
T Consensus 1 ~~l~~k~IllgVTGs----ia-a~k~a~~lir~L~k~G 33 (196)
T PRK08305 1 MSLKGKRIGFGLTGS----HC-TYDEVMPEIEKLVDEG 33 (196)
T ss_pred CCCCCCEEEEEEcCH----HH-HHHHHHHHHHHHHhCc
Confidence 677788886654443 13 444 355569999999
No 223
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=47.08 E-value=1.3e+02 Score=23.74 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=49.1
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
.++++++-+ -.++.+..++..+..+.. .+...++++. ..|+.+..+....-.-.+.+++..|++|++-..-
T Consensus 23 ~~~~~v~~v-~d~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~ 95 (120)
T PF01408_consen 23 SPDFEVVAV-CDPDPERAEAFAEKYGIP-----VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPL 95 (120)
T ss_dssp TTTEEEEEE-ECSSHHHHHHHHHHTTSE-----EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSS
T ss_pred CCCcEEEEE-EeCCHHHHHHHHHHhccc-----chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCC
Confidence 456655422 233445566666776655 3344557777 5699988877777777899999999999998863
No 224
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=47.03 E-value=95 Score=29.66 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecC-CCCHH-HHHHhcCeEEecCCC
Q 012256 244 YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG-RDHAD-LIFHDYKVFLNPSTT 311 (467)
Q Consensus 244 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~-~~~~~-~~~~~adv~v~ps~~ 311 (467)
.+...+|+..+.++.++..++|.+|..+ -+++........+.+.+. -+..+ .+|+.||.+|.+..+
T Consensus 190 ~~Yy~~Ai~~i~~~~~~~~f~ifSDD~~--w~k~~l~~~~~~~~~~~~~~~~~Dl~lms~C~~~IisnST 257 (298)
T PF01531_consen 190 KDYYKKAIEYIREKVKNPKFFIFSDDIE--WCKENLKFSNGDVYFSGNNSPYEDLYLMSQCKHFIISNST 257 (298)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHhhcCCcEEEECCCCHHHHHHHHHhCCcEEECCCh
Confidence 5677889999988888999999998544 444444433334555555 23333 899999999998433
No 225
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=46.93 E-value=42 Score=28.17 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=53.4
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHHHh----c-CeEEecCCCCCCcHHHHHHH-HcCCeEEEe---CCCCcc------
Q 012256 275 IQEAAEKLKIVVRVYPGRDHAD--LIFHD----Y-KVFLNPSTTDVVCTTTAEAL-AMGKIVVCA---NHPSND------ 337 (467)
Q Consensus 275 l~~~~~~~~~~v~~~g~~~~~~--~~~~~----a-dv~v~ps~~e~~~~~~lEAm-a~G~PVV~t---~~g~~e------ 337 (467)
+++.+++++..+.|+-.=...+ +.++. + .+.++|.-+--.+.++.+|+ ++++|+|=- +.-.+|
T Consensus 35 ~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~S 114 (146)
T PRK13015 35 CRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAFRHHS 114 (146)
T ss_pred HHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccccc
Confidence 4455555666666653222222 33333 2 37789977777889999997 578898843 333344
Q ss_pred ccccCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 338 FFKQFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 338 ~v~~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
++.+-..|.+.- -.+...-++..+++
T Consensus 115 ~is~~~~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK13015 115 YVSAIADGVICGLGTEGYRLALRRLAT 141 (146)
T ss_pred cccCceeEEEeeCCHHHHHHHHHHHHH
Confidence 444545566655 66677777666654
No 226
>PLN00414 glycosyltransferase family protein
Probab=46.84 E-value=26 Score=35.67 Aligned_cols=40 Identities=33% Similarity=0.586 Sum_probs=30.7
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeee
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPW 47 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~ 47 (467)
|.+| .||+++ |+..-+.++++..+ +.|+.+| .+||++++.
T Consensus 1 ~~~~-~HVvlv-----PfpaqGHi~PmL~LAk~Las~G-~~VT~vtt~ 41 (446)
T PLN00414 1 MGSK-FHAFMY-----PWFGFGHMIPYLHLANKLAEKG-HRVTFFLPK 41 (446)
T ss_pred CCCC-CEEEEe-----cCcccchHHHHHHHHHHHHhCC-CEEEEEeCC
Confidence 6666 788877 44444588999887 9999999 788888764
No 227
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=46.64 E-value=2.3e+02 Score=25.76 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHH---HHHHH--HhcCCeeEEecCC-CCHH--HHHHhcCeEEecCCCCC
Q 012256 242 KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQ---IQEAA--EKLKIVVRVYPGR-DHAD--LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 242 Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~---l~~~~--~~~~~~v~~~g~~-~~~~--~~~~~adv~v~ps~~e~ 313 (467)
.-.+.+.+.+..+.+....+.++.....+.... ..... .....++...... +..+ ++++.+|++|-..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH-- 267 (286)
T PF04230_consen 190 EYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH-- 267 (286)
T ss_pred hHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH--
Confidence 334555666666655433444444443322111 11111 1222244444333 3333 999999999977654
Q ss_pred CcHHHHHHHHcCCeEEEeCC
Q 012256 314 VCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~ 333 (467)
..+=|+++|+|+|+-..
T Consensus 268 ---~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 ---GAILALSLGVPVIAISY 284 (286)
T ss_pred ---HHHHHHHcCCCEEEEec
Confidence 57889999999998653
No 228
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=46.52 E-value=62 Score=25.32 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcCCeEEEEEecC--CCHHHHHHHHHhcCCee
Q 012256 248 LELLDDHQKELAGLEVDLYGNG--EDFNQIQEAAEKLKIVV 286 (467)
Q Consensus 248 i~a~~~l~~~~~~~~l~i~G~g--~~~~~l~~~~~~~~~~v 286 (467)
...+.++.+.+|+.+++++||. .|.+...+.+++...++
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i 92 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRI 92 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCE
Confidence 3445555566899999999973 34556667777766544
No 229
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=46.47 E-value=2.3e+02 Score=25.87 Aligned_cols=42 Identities=10% Similarity=-0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCCCCC-CC
Q 012256 422 ASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTP-MS 464 (467)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 464 (467)
+...+...+...+....+++.....-...-+.+++.|+. | |+
T Consensus 170 ~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~-~~di 212 (272)
T cd06301 170 AMDLMENWLSSGGKIDAVVANNDEMALGAIMALKAAGKS-DKDV 212 (272)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCC-CCCc
Confidence 444445555444434666666555555788999999998 6 54
No 230
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=46.29 E-value=61 Score=30.21 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=31.7
Q ss_pred CHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 294 HADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 294 ~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
+.++++..+|+++..|..+...-.+..|+..|+|||...+|-
T Consensus 53 dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF 94 (257)
T ss_pred CHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 334667778999977766666667888999999999875553
No 231
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=45.53 E-value=72 Score=31.35 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHhcCeEEec--CCCCCCcH-HHHHHHHcCC-eEEEeCC-CC-ccccccCCCEEe-eC---CHHHHHHHHHHHHhcCC
Q 012256 297 LIFHDYKVFLNP--STTDVVCT-TTAEALAMGK-IVVCANH-PS-NDFFKQFPNCRT-YD---DRNGFVEATLKALAEEP 366 (467)
Q Consensus 297 ~~~~~adv~v~p--s~~e~~~~-~~lEAma~G~-PVV~t~~-g~-~e~v~~~~~g~~-~~---~~~~l~~~i~~~l~~~~ 366 (467)
++++.+.+.+-. |..+++=. ++.+|+..|+ ||+-... +. .+++..+ .++ ++ ++++||+-|..+-.|+.
T Consensus 223 ~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~--SfI~~~df~s~~~La~yl~~l~~n~~ 300 (349)
T PF00852_consen 223 ELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPN--SFIHVDDFKSPKELADYLKYLDKNDE 300 (349)
T ss_dssp HHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GG--GSEEGGGSSSHHHHHHHHHHHHT-HH
T ss_pred ccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCC--CccchhcCCCHHHHHHHHHHHhcCHH
Confidence 677777766644 22334332 6889999999 5555432 22 3555542 333 22 89999999999877753
Q ss_pred CCccHHHHHcCCHHHH
Q 012256 367 ALPTEAQRHQLSWESA 382 (467)
Q Consensus 367 ~~~~~~~~~~~sw~~~ 382 (467)
. -.+.|.|...
T Consensus 301 ~-----Y~~yf~Wr~~ 311 (349)
T PF00852_consen 301 L-----YNKYFEWRKR 311 (349)
T ss_dssp H-----HH--------
T ss_pred H-----Hhhhcccccc
Confidence 2 2345555443
No 232
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=45.47 E-value=3.4e+02 Score=27.43 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=66.7
Q ss_pred ccCHHHHHHHHHH-HHhh---cCCeEEEEEecC----CCHHHHHHHHHhcCCeeEEecC--------------------C
Q 012256 241 SKGYKELLELLDD-HQKE---LAGLEVDLYGNG----EDFNQIQEAAEKLKIVVRVYPG--------------------R 292 (467)
Q Consensus 241 ~Kg~~~li~a~~~-l~~~---~~~~~l~i~G~g----~~~~~l~~~~~~~~~~v~~~g~--------------------~ 292 (467)
..|++..++++-. +... ..+-.+.|+|.. .+.++++++.++.|+++..... .
T Consensus 132 ~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~ 211 (428)
T cd01965 132 ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGT 211 (428)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCC
Confidence 4788888876653 2221 123456777632 2578899999999997766532 2
Q ss_pred CCHH-HHHHhcCeEEecCCCCCCcHHHHHHHH--cCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcC
Q 012256 293 DHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 293 ~~~~-~~~~~adv~v~ps~~e~~~~~~lEAma--~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
..++ +-+..|.+-+..+ .-++..+.|+|. +|.|-+....+- -.+..+++.++|.+++..+
T Consensus 212 ~~e~i~~~~~A~lniv~~--~~~~~~~a~~L~e~~GiP~~~~~~p~-----------G~~~t~~~l~~l~~~~g~~ 274 (428)
T cd01965 212 TLEEIRDAGNAKATIALG--EYSGRKAAKALEEKFGVPYILFPTPI-----------GLKATDEFLRALSKLSGKP 274 (428)
T ss_pred cHHHHHHhccCcEEEEEC--hhhhHHHHHHHHHHHCCCeeecCCCc-----------ChHHHHHHHHHHHHHHCCC
Confidence 2222 3344444444332 235667777775 899988775421 1124567777887777654
No 233
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=44.55 E-value=1.2e+02 Score=29.16 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=52.3
Q ss_pred cCCeE-E-EEEecCCC-----HHHHHHHHHhcCCeeEEec--CCCCHH----HHHHhcCeEEecCCC---CCCcHHHHHH
Q 012256 258 LAGLE-V-DLYGNGED-----FNQIQEAAEKLKIVVRVYP--GRDHAD----LIFHDYKVFLNPSTT---DVVCTTTAEA 321 (467)
Q Consensus 258 ~~~~~-l-~i~G~g~~-----~~~l~~~~~~~~~~v~~~g--~~~~~~----~~~~~adv~v~ps~~---e~~~~~~lEA 321 (467)
.||++ + +++++++. .+++++.++..|+.+.-.. ...+.. .+....|++..|... -++...+.+|
T Consensus 156 ~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~~a 235 (322)
T COG2984 156 LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQVA 235 (322)
T ss_pred CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHHHH
Confidence 67764 3 56777664 4557777778888765443 232222 455677999888543 2455668899
Q ss_pred HHcCCeEEEeCCCC
Q 012256 322 LAMGKIVVCANHPS 335 (467)
Q Consensus 322 ma~G~PVV~t~~g~ 335 (467)
.....|+++++.+.
T Consensus 236 ~~~kiPli~sd~~~ 249 (322)
T COG2984 236 NKAKIPLIASDTSS 249 (322)
T ss_pred HHhCCCeecCCHHH
Confidence 99999999998753
No 234
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=43.97 E-value=52 Score=27.45 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHHhc-----CeEEecCCCCCCcHHHHHHH-HcCCeEEE---eCCCCcc-----
Q 012256 274 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVC---ANHPSND----- 337 (467)
Q Consensus 274 ~l~~~~~~~~~~v~~~g~~~~~~--~~~~~a-----dv~v~ps~~e~~~~~~lEAm-a~G~PVV~---t~~g~~e----- 337 (467)
.+++.+++++..+.|+-.=...+ +.++.+ .+.++|.-+--.+.++.+|+ +.++|+|= |+.-.+|
T Consensus 32 ~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~fR~~ 111 (141)
T TIGR01088 32 IIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEFRHH 111 (141)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCcccccccccc
Confidence 34555556666666653322222 444444 37789987777899999997 57889884 3333344
Q ss_pred -ccccCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 338 -FFKQFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 338 -~v~~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
++.+-..|.+.- -.+...-++..+++
T Consensus 112 S~is~~~~G~I~G~G~~gY~lAl~a~~~ 139 (141)
T TIGR01088 112 SYTAPVAGGVIVGLGAQGYLLALRYLVE 139 (141)
T ss_pred ccccccceEEEeecCHHHHHHHHHHHHH
Confidence 344444555554 66666666666543
No 235
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=42.71 E-value=3.7e+02 Score=27.13 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=65.5
Q ss_pred cccCHHHHHHHHHHHHhh-----cCCeEEEEEecC--------CCHHHHHHHHHhcCCeeEEe--cCCCCHH-HHHHhcC
Q 012256 240 WSKGYKELLELLDDHQKE-----LAGLEVDLYGNG--------EDFNQIQEAAEKLKIVVRVY--PGRDHAD-LIFHDYK 303 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~-----~~~~~l~i~G~g--------~~~~~l~~~~~~~~~~v~~~--g~~~~~~-~~~~~ad 303 (467)
...|++..++++-..... ..+-.+-|+|.. .+..+++++.+++|+++... ++-...+ .-+..|.
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~ 215 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAA 215 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCC
Confidence 347888888777543211 112247777843 33578999999999977655 3344444 4455555
Q ss_pred eEEecCCCCCCcHHHHHHH--HcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHh
Q 012256 304 VFLNPSTTDVVCTTTAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAm--a~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~ 363 (467)
+-|..+. .++..+.+.| -+|.|.+....+- | .+..+++.+.|.+.+.
T Consensus 216 lniv~~~--~~g~~~a~~Lee~~GiP~~~~~~P~---------G--~~~T~~~l~~ia~~~g 264 (426)
T cd01972 216 ANVTLCL--DLGYYLGAALEQRFGVPEIKAPQPY---------G--IEATDKWLREIAKVLG 264 (426)
T ss_pred EEEEECh--hHHHHHHHHHHHHhCCCeEecCCcc---------C--HHHHHHHHHHHHHHhC
Confidence 5554432 2567788887 4899988654321 0 1134566666666554
No 236
>PLN02327 CTP synthase
Probab=42.51 E-value=4.3e+02 Score=27.77 Aligned_cols=39 Identities=8% Similarity=-0.141 Sum_probs=26.6
Q ss_pred HHHHhcCeEEecCCC-----CCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 297 LIFHDYKVFLNPSTT-----DVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 297 ~~~~~adv~v~ps~~-----e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
+.+..+|.+++|.-+ ++.-..+-.|...|+|+++.=.|.
T Consensus 358 ~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGm 401 (557)
T PLN02327 358 KLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGM 401 (557)
T ss_pred HhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHH
Confidence 468888999998643 333344555667799998876664
No 237
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=41.90 E-value=55 Score=27.51 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=52.6
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHHHhc-----CeEEecCCCCCCcHHHHHHH-HcCCeEEEe---CCCCccc-----
Q 012256 275 IQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCA---NHPSNDF----- 338 (467)
Q Consensus 275 l~~~~~~~~~~v~~~g~~~~~~--~~~~~a-----dv~v~ps~~e~~~~~~lEAm-a~G~PVV~t---~~g~~e~----- 338 (467)
+++.+++++..+.|.-.=...+ +.++.+ .+.++|.-+--.+.++.+|+ +.++|+|=- +.-.+|.
T Consensus 35 ~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~S 114 (146)
T PRK05395 35 LEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRHHS 114 (146)
T ss_pred HHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccccc
Confidence 4444555566666553322222 444444 36788977777889999997 468898843 3333443
Q ss_pred -cccCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 339 -FKQFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 339 -v~~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
+.+-..|.+.- -.+...-++..+++
T Consensus 115 ~is~~a~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK05395 115 YISDVAVGVICGFGADGYLLALEALAE 141 (146)
T ss_pred cccccceEEEeeCCHHhHHHHHHHHHH
Confidence 44444555555 66666666666554
No 238
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=41.42 E-value=2.1e+02 Score=25.87 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=62.2
Q ss_pred CceEEEEecc-ccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCH-HHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEE
Q 012256 229 AKGAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDF-NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl-~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v 306 (467)
..+++|+|.. ...+. .|++..+++++..-.+.++.+|..... +.+.+.+.-++.. =..++++.
T Consensus 108 ~riVvFvGSpi~e~ek--eLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~-------------~~gshlv~ 172 (259)
T KOG2884|consen 108 QRIVVFVGSPIEESEK--ELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK-------------GDGSHLVS 172 (259)
T ss_pred eEEEEEecCcchhhHH--HHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC-------------CCCceEEE
Confidence 4578899984 33333 777777888776566777777764443 3344444322210 12345555
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCCCCc--cccccCC-CEEeeC--CHHHHHHHHHHHHhc
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANHPSN--DFFKQFP-NCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~g~~--e~v~~~~-~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.|+- .+++-.-.-.||+.-+.|+. ....++. .-|-++ +..+||.|++--++.
T Consensus 173 Vppg------~~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 173 VPPG------PLLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred eCCC------ccHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHH
Confidence 5532 24444556678888876442 2222210 012222 445788888766654
No 239
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=41.23 E-value=1.3e+02 Score=29.82 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=54.0
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHHH
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTT 318 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~~ 318 (467)
.++++.+.+...++ .| +++++++......+++.... ..++++.+.+...++... +|++|...-...---.+
T Consensus 36 ~~n~~~l~~q~~~f---~p--~~v~i~~~~~~~~l~~~l~~--~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~pt 108 (385)
T PRK05447 36 GKNVELLAEQAREF---RP--KYVVVADEEAAKELKEALAA--AGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLPT 108 (385)
T ss_pred CCCHHHHHHHHHHh---CC--CEEEEcCHHHHHHHHHhhcc--CCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHHH
Confidence 67888887777665 34 45666665444555543321 234455444333456554 48998886544323568
Q ss_pred HHHHHcCCeEEEeCCC
Q 012256 319 AEALAMGKIVVCANHP 334 (467)
Q Consensus 319 lEAma~G~PVV~t~~g 334 (467)
++|+..|++|.+.+-.
T Consensus 109 l~Ai~aGK~VaLANKE 124 (385)
T PRK05447 109 LAAIRAGKRIALANKE 124 (385)
T ss_pred HHHHHCCCcEEEeCHH
Confidence 9999999999997753
No 240
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=40.72 E-value=96 Score=25.57 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=56.2
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v 306 (467)
++.+..+. -.+|++.|.+...++ .| +.+.+.+....+.+++.....+.+++++.+.+.-.++.. .+|+.|
T Consensus 24 ~f~v~~Ls---a~~n~~~L~~q~~~f---~p--~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~~~~~~D~vv 95 (129)
T PF02670_consen 24 KFEVVALS---AGSNIEKLAEQAREF---KP--KYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELAEEPEVDIVV 95 (129)
T ss_dssp TEEEEEEE---ESSTHHHHHHHHHHH---T---SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHTHTT-SEEE
T ss_pred ceEEEEEE---cCCCHHHHHHHHHHh---CC--CEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHhcCCCCCEEE
Confidence 34444444 378999999988877 34 346666555555666655444557777755443334444 569998
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~ 332 (467)
+...--.-=.++++|+-.|+-+--.+
T Consensus 96 ~Ai~G~aGL~pt~~Ai~~gk~iaLAN 121 (129)
T PF02670_consen 96 NAIVGFAGLKPTLAAIKAGKDIALAN 121 (129)
T ss_dssp E--SSGGGHHHHHHHHHTTSEEEE--
T ss_pred EeCcccchHHHHHHHHHCCCeEEEec
Confidence 87432211135889999998765544
No 241
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.66 E-value=47 Score=25.65 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=42.9
Q ss_pred EEEEecCCC----HHHHHHHHHhcCCeeEEe-cCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHH--cCCeEEEeCC
Q 012256 263 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANH 333 (467)
Q Consensus 263 l~i~G~g~~----~~~l~~~~~~~~~~v~~~-g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma--~G~PVV~t~~ 333 (467)
++++|.|-. -..+++.+++.++++.+. ..+...++....+|+++...... +-..-++..+ .|+||+..+.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeCh
Confidence 677777754 244677777778877665 44444445667789888764422 1233344443 4779988765
No 242
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=40.16 E-value=57 Score=25.19 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=43.4
Q ss_pred EEEEecCCC----HHHHHHHHHhcCCeeEEe-cCCCCHHHHHHhcCeEEecCCCCCCcHHHHH--HHHcCCeEEEeCC
Q 012256 263 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAE--ALAMGKIVVCANH 333 (467)
Q Consensus 263 l~i~G~g~~----~~~l~~~~~~~~~~v~~~-g~~~~~~~~~~~adv~v~ps~~e~~~~~~lE--Ama~G~PVV~t~~ 333 (467)
++++|.|-. -+.+++.+++.++++.+. ..+...++.+..+|+++..... .+-..-++ +.-.++||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv-~~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQV-RYMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhH-HHHHHHHHHHhccCCCcEEEcCh
Confidence 677777655 345777777788876665 4444444567788988876432 22233343 3347888887664
No 243
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=39.67 E-value=3.7e+02 Score=27.24 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=70.9
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHHH---hh-cC--C-CCCCceEEEEeccccccCHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---QQ-NG--T-HAFAKGAYYIGKMVWSKGYKELLEL 250 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~~-~~--~-~~~~~~il~vGrl~~~Kg~~~li~a 250 (467)
+|.+++=+. ...++.+ ..+++||+-|.+...|.+..... .+ .+ . .-....|.|+|-+...+=...++.+
T Consensus 183 ~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~ 262 (429)
T PRK11891 183 VDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKL 262 (429)
T ss_pred CCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHH
Confidence 587776552 2333332 46788898876667775543221 11 11 1 1235689999977434445666666
Q ss_pred HHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 251 LDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 251 ~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
+.. ..++++.+++.... .+.+.+.+++.|.++.+ .++.++.+..|||+...+.
T Consensus 263 la~----~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~---~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 263 LAL----YRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ---TDDLAAGLRGADVVYATRI 317 (429)
T ss_pred HHH----hcCCEEEEECCCccccCHHHHHHHHhcCCeEEE---EcCHHHHhCCCCEEEEcCc
Confidence 543 34678999996332 23444445555545443 2455588999999887653
No 244
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=39.46 E-value=4.3e+02 Score=26.96 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=64.3
Q ss_pred cccCHHHHHHHHHHHH-hh-cC--------CeEEEEEecC---CCHHHHHHHHHhcCCeeEE-e-cCCCCHH-HHHHhcC
Q 012256 240 WSKGYKELLELLDDHQ-KE-LA--------GLEVDLYGNG---EDFNQIQEAAEKLKIVVRV-Y-PGRDHAD-LIFHDYK 303 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~-~~-~~--------~~~l~i~G~g---~~~~~l~~~~~~~~~~v~~-~-g~~~~~~-~~~~~ad 303 (467)
...|++..++++-... .. .+ +-.+-|+|.- .+..+++++.+++|+++.. + +.-..++ .-+..|.
T Consensus 167 ~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~ 246 (456)
T TIGR01283 167 KNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAK 246 (456)
T ss_pred hhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCc
Confidence 4567777776664332 11 11 2457788842 2456899999999997763 3 4433444 4455555
Q ss_pred eEEecCCCCCCcHHHHHHH--HcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhc
Q 012256 304 VFLNPSTTDVVCTTTAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 364 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAm--a~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~ 364 (467)
+-|... ...+..+.+.| -+|.|.+.... +-.++.+++...|.+++..
T Consensus 247 lniv~~--~~~~~~~a~~L~e~~GiP~~~~~~------------~G~~~T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 247 LNMVQC--SKSMINLARKMEEKYGIPYFEGSF------------YGIEDTSKALRDIADLFGD 295 (456)
T ss_pred EEEEEC--HhHHHHHHHHHHHHcCCCEEecCC------------CcHHHHHHHHHHHHHHhCC
Confidence 554332 22345677777 57999886321 1122456777777776664
No 245
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=39.11 E-value=78 Score=28.89 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=49.4
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEe-cCCCCHHHHHHh--cCeEE
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY-PGRDHADLIFHD--YKVFL 306 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~-g~~~~~~~~~~~--adv~v 306 (467)
+.+.| ||...-|=-..+++.++++++..+.+++-. +.|+. .+..++ .|-+. |.- ..++.. +|+++
T Consensus 144 ~~~G~-gr~~e~~~~~~~~~~l~~ik~~l~~v~val-~~g~~---~~~~i~----~V~vcAgsg---~svlk~~~adly~ 211 (272)
T KOG4131|consen 144 ETIGY-GREEETKINLNVVEILKRIKRGLSSVRVAL-AVGHT---LESQIK----KVAVCAGSG---SSVLKGVDADLYI 211 (272)
T ss_pred ccccc-cceeeccCcccHHHHHHHHHhcCCeEEEee-ccCCc---ccccee----EEEEeeccC---cceeccccccEEE
Confidence 45666 887766544458888888877556555443 22221 111111 22222 110 022333 55555
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
-- |=.=--+++|++.|.-||..++..
T Consensus 212 TG---EmSHH~vL~~~~~g~sVilc~HSN 237 (272)
T KOG4131|consen 212 TG---EMSHHDVLDAAANGISVILCEHSN 237 (272)
T ss_pred ec---cccHHHHHHHHHcCCeEEEecCCC
Confidence 22 222234899999999999998843
No 246
>PLN02527 aspartate carbamoyltransferase
Probab=38.48 E-value=3.7e+02 Score=25.85 Aligned_cols=122 Identities=7% Similarity=-0.020 Sum_probs=70.8
Q ss_pred cCEEEEcCHh---hHHhhh-cccccccccCCCccccchhhHH---HhhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSAA---TQEYAN-SIICNVHGVNPKFLEIGKKKKE---QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~~---~~~~~~-~~i~~i~gvd~~~~~~~~~~~~---~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=... ...+.+ ..+++||+-+.....|.+.... ..+....-....|.|+|-....+=...++.++..
T Consensus 97 ~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~~~~rv~~Sl~~~~~~- 175 (306)
T PLN02527 97 SDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAK- 175 (306)
T ss_pred CcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCCCChhHHHHHHHHHh-
Confidence 5876665522 223332 4678888877555666543322 1122222335789999976433446666776654
Q ss_pred HhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
..++.+.+++.... ...+.+.+++.|.++.+. .+.++.+..|||+.....
T Consensus 176 ---~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 176 ---YEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEES---SDLMEVASKCDVLYQTRI 227 (306)
T ss_pred ---cCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEE---cCHHHHhCCCCEEEECCc
Confidence 35688999996332 344555555555444433 445588999999887543
No 247
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=38.25 E-value=1.7e+02 Score=26.71 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=24.3
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
|++|.....|.. .+++||.=++.|+|+--.
T Consensus 175 D~vvvln~~e~~-sAilEA~K~~IPTIgIVD 204 (251)
T KOG0832|consen 175 DLVVVLNPEENH-SAILEAAKMAIPTIGIVD 204 (251)
T ss_pred ceeEecCccccc-HHHHHHHHhCCCeEEEec
Confidence 777777666664 589999999999998655
No 248
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=37.45 E-value=2.7e+02 Score=24.77 Aligned_cols=100 Identities=7% Similarity=0.006 Sum_probs=55.2
Q ss_pred eEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc-c--
Q 012256 261 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-D-- 337 (467)
Q Consensus 261 ~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~-e-- 337 (467)
.+++++.... ..++.+.+.. + .+.+.... ..+..+..+|+++..+-.+.....+.+....|.+|-..+.+.. +
T Consensus 34 a~V~VIs~~~-~~~l~~l~~~-~-~i~~~~~~-~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f~ 109 (202)
T PRK06718 34 AHIVVISPEL-TENLVKLVEE-G-KIRWKQKE-FEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNVV 109 (202)
T ss_pred CeEEEEcCCC-CHHHHHHHhC-C-CEEEEecC-CChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeEE
Confidence 4566665422 2445555543 2 34443221 1124577889888776666666677777678888888777542 3
Q ss_pred ---ccccCCCEEeeC---CHHHHHHHHHHHHhc
Q 012256 338 ---FFKQFPNCRTYD---DRNGFVEATLKALAE 364 (467)
Q Consensus 338 ---~v~~~~~g~~~~---~~~~l~~~i~~~l~~ 364 (467)
++..+.--+-+. ....++..|++-+++
T Consensus 110 ~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 110 FPSALHRGKLTISVSTDGASPKLAKKIRDELEA 142 (202)
T ss_pred EeeEEEcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 333332212222 345666666666554
No 249
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=35.88 E-value=4.6e+02 Score=26.20 Aligned_cols=132 Identities=9% Similarity=0.057 Sum_probs=77.0
Q ss_pred CCCCceEEEEecccccc---C---HHHHHHHHHHHHhhc-CCeEEEEEecCCCHH-HHHHHHHhcCCeeEEecCCCC-HH
Q 012256 226 HAFAKGAYYIGKMVWSK---G---YKELLELLDDHQKEL-AGLEVDLYGNGEDFN-QIQEAAEKLKIVVRVYPGRDH-AD 296 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~K---g---~~~li~a~~~l~~~~-~~~~l~i~G~g~~~~-~l~~~~~~~~~~v~~~g~~~~-~~ 296 (467)
+.++++|+|.-...+.. | ....++..+..+... .+..+ |+=.-+... .+...- ... .+.-.+++ .+
T Consensus 205 ~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i-i~k~Hp~is~~~~~~~-~~~---~~~~~vs~~~d 279 (388)
T COG1887 205 PQDKKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLGENEYVI-IVKPHPLISDKIDKRY-ALD---DFVLDVSDNAD 279 (388)
T ss_pred cccCceEEecCCccCCccccchhhhhhhhhHHHHHHhhccCCeEE-EEecChhhhhhhhhhh-hcc---ceeEecccchh
Confidence 44578999998887665 2 444444444333333 34534 433333322 121111 111 12222322 33
Q ss_pred --HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc------ccc---ccCCCEEeeCCHHHHHHHHHHHHhcC
Q 012256 297 --LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN------DFF---KQFPNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 297 --~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~------e~v---~~~~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
++|..+|++|.= ++-++.|+|..-+|||.--.... +.+ +...-|-++.+.+++.++|...+.++
T Consensus 280 i~dll~~sDiLITD-----ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~~~ 354 (388)
T COG1887 280 INDLLLVSDILITD-----YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDEDG 354 (388)
T ss_pred HHHHHhhhCEEEee-----chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhccc
Confidence 999999999943 56789999999999998754221 122 22334567778999999999988764
Q ss_pred CC
Q 012256 366 PA 367 (467)
Q Consensus 366 ~~ 367 (467)
..
T Consensus 355 ~~ 356 (388)
T COG1887 355 NY 356 (388)
T ss_pred ch
Confidence 43
No 250
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=35.77 E-value=3.8e+02 Score=26.94 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=61.5
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCCe-eEEecCCCCHH---HHHHhc--C
Q 012256 231 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIV-VRVYPGRDHAD---LIFHDY--K 303 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~~-v~~~g~~~~~~---~~~~~a--d 303 (467)
+.+....+.+-.-..-| ++++++++|++.+++.-..+. .+...+ .++.. .+.+-.++..- .+++.. |
T Consensus 52 vWiHaaSVGEv~a~~pL---v~~l~~~~P~~~ilvTt~T~Tg~e~a~~---~~~~~v~h~YlP~D~~~~v~rFl~~~~P~ 125 (419)
T COG1519 52 VWIHAASVGEVLAALPL---VRALRERFPDLRILVTTMTPTGAERAAA---LFGDSVIHQYLPLDLPIAVRRFLRKWRPK 125 (419)
T ss_pred EEEEecchhHHHHHHHH---HHHHHHhCCCCCEEEEecCccHHHHHHH---HcCCCeEEEecCcCchHHHHHHHHhcCCC
Confidence 55566666655444444 445556789998888764444 333333 33432 23344454444 555544 7
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+.|+- .+|-+|+.+.|+-..|+|.+--+.
T Consensus 126 l~Ii~-EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 126 LLIIM-ETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred EEEEE-eccccHHHHHHHHHcCCCEEEEee
Confidence 77765 578999999999999999998775
No 251
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=35.60 E-value=31 Score=23.80 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCeEEEe
Q 012256 316 TTTAEALAMGKIVVCA 331 (467)
Q Consensus 316 ~~~lEAma~G~PVV~t 331 (467)
-.|.|++-+|.||+|-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 3699999999999874
No 252
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.93 E-value=58 Score=31.28 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
.+|+.|.++.+.+.|.-.- -+.-+..+..|.+.|-.+|++++|||
T Consensus 34 v~g~~v~ii~s~~~p~nd~-l~ell~~~~a~r~~~a~~i~~ViPYl 78 (304)
T PRK03092 34 VRGCDAFVLQSHTAPINKW-LMEQLIMIDALKRASAKRITVVLPFY 78 (304)
T ss_pred CCCCEEEEEeCCCCCCcHH-HHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 3567788888876563221 33334444999999988999999986
No 253
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=34.76 E-value=58 Score=31.26 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
+|+.|.|+.+.+.|.-.- -+.-+..+..|.+.|..+|++++|||
T Consensus 37 ~g~~V~iv~s~~~p~nd~-l~eLl~~~~a~r~~~a~~i~~ViPYl 80 (302)
T PLN02369 37 RGCDVFLVQPTCPPANEN-LMELLIMIDACRRASAKRITAVIPYF 80 (302)
T ss_pred CCCeEEEEecCCCCcchH-HHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 467788888877663221 22333334999999988899999986
No 254
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=34.67 E-value=1.1e+02 Score=28.69 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=44.9
Q ss_pred CCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhh--c------cchHHHHHHHHHHHHhhhhh--cCEE
Q 012256 117 VADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKRE--K------NGRLQAFLLKYANSWLVDIY--CHKV 185 (467)
Q Consensus 117 ~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~--~d~v 185 (467)
+.||.|+......++. +.....+.+ |.+.+-|+.+..-.... . .+.++....+.+..+....| ||.|
T Consensus 172 ~advyHsvstGyAgl~--g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I 249 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLL--GALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADRI 249 (268)
T ss_pred CCCEEecCCccHHHHH--HHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCee
Confidence 5699999765444444 333333334 99999999876432111 1 13355555566666544444 9999
Q ss_pred EEcCHhhH
Q 012256 186 IRLSAATQ 193 (467)
Q Consensus 186 i~~S~~~~ 193 (467)
+.+++..+
T Consensus 250 ~~l~~~n~ 257 (268)
T PF11997_consen 250 TPLYEYNR 257 (268)
T ss_pred cccchhhH
Confidence 99986544
No 255
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=34.47 E-value=75 Score=26.49 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=53.0
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHHHhc-----CeEEecCCCCCCcHHHHHHH-HcCCeEEEe---CCCCcc------
Q 012256 275 IQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCA---NHPSND------ 337 (467)
Q Consensus 275 l~~~~~~~~~~v~~~g~~~~~~--~~~~~a-----dv~v~ps~~e~~~~~~lEAm-a~G~PVV~t---~~g~~e------ 337 (467)
+++.+++++..+.|.-.=...+ +.++.+ .+.++|.-+--.+.++..|+ +.++|+|=- +.-.+|
T Consensus 33 l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~fR~~S 112 (140)
T cd00466 33 LRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREEFRHHS 112 (140)
T ss_pred HHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccccc
Confidence 4455555666666653322222 444433 36788977777789999997 568898843 332344
Q ss_pred ccccCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 338 FFKQFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 338 ~v~~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
++.+-..|.+.- -.+...-++..+++
T Consensus 113 ~is~~~~G~I~G~G~~gY~lAl~~~~~ 139 (140)
T cd00466 113 VISPVATGVIAGLGADGYRLALEALAS 139 (140)
T ss_pred ccccceeEEEEeCCHHHHHHHHHHHHh
Confidence 344445555555 66777777776653
No 256
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=34.06 E-value=43 Score=29.97 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEee
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIP 46 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p 46 (467)
+++++|+|+ |++......++.|.+.| .+|+++.|
T Consensus 8 l~~k~vLVI---------GgG~va~~ka~~Ll~~g-a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIV---------GGGKVAGRRAITLLKYG-AHIVVISP 41 (202)
T ss_pred cCCCEEEEE---------CCCHHHHHHHHHHHHCC-CeEEEEcC
Confidence 456788887 33434455568899999 44444443
No 257
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=33.88 E-value=64 Score=31.03 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=18.2
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
|+|..+||+|+.... .....+..|++.|
T Consensus 1 ~~~~~m~I~IiG~Ga---------iG~~lA~~L~~~g 28 (313)
T PRK06249 1 MDSETPRIGIIGTGA---------IGGFYGAMLARAG 28 (313)
T ss_pred CCCcCcEEEEECCCH---------HHHHHHHHHHHCC
Confidence 665556699984332 3344567799999
No 258
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=33.75 E-value=3.5e+02 Score=24.21 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=53.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH--HhcCCeeEEecCCC----------------C-HH--HHH
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAA--EKLKIVVRVYPGRD----------------H-AD--LIF 299 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~--~~~~~~v~~~g~~~----------------~-~~--~~~ 299 (467)
...+..|++-+..+.......++.|+|.|..-..+.+.. ...+ +++.|.++ . .+ +++
T Consensus 65 gy~v~~l~~~~~~~l~~~~~~rV~IIGaG~iG~~l~~~~~~~~~g--~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li 142 (213)
T PRK05472 65 GYNVEELLEFIEKILGLDRTWNVALVGAGNLGRALLNYNGFEKRG--FKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVV 142 (213)
T ss_pred CeeHHHHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhhhcccCC--cEEEEEEECChhhcCCEeCCeEEcCHHHHHHHH
Confidence 466888888888877555567889999887644444321 1222 22222211 1 11 555
Q ss_pred Hh--cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCcccc
Q 012256 300 HD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFF 339 (467)
Q Consensus 300 ~~--adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v 339 (467)
+. .|+++.........-..-.+...|+..|-+..+..--+
T Consensus 143 ~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v 184 (213)
T PRK05472 143 KENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSV 184 (213)
T ss_pred HHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecC
Confidence 44 67777664443333334556678976666655543333
No 259
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=33.52 E-value=2.4e+02 Score=24.81 Aligned_cols=98 Identities=13% Similarity=0.018 Sum_probs=47.0
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHH-HHHHHHhcCCeeEEecCCCCHH---HHHHhc--C
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQ-IQEAAEKLKIVVRVYPGRDHAD---LIFHDY--K 303 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~-l~~~~~~~~~~v~~~g~~~~~~---~~~~~a--d 303 (467)
.+.+....+.+-. .+...++.+++++|+.++++-...+.-.+ .++...+ ... .++-.++... .+++.. |
T Consensus 23 ~iWiHa~SvGE~~---a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v~-~~~~P~D~~~~~~rfl~~~~P~ 97 (186)
T PF04413_consen 23 LIWIHAASVGEVN---AARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RVD-VQYLPLDFPWAVRRFLDHWRPD 97 (186)
T ss_dssp -EEEE-SSHHHHH---HHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G-S-EEE---SSHHHHHHHHHHH--S
T ss_pred cEEEEECCHHHHH---HHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-CeE-EEEeCccCHHHHHHHHHHhCCC
Confidence 3555555555543 44455555566789999999887665333 3333222 212 3334455544 666655 8
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
++|.- .+|-.|+-+.+|-..|+|++.-+.
T Consensus 98 ~~i~~-EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 98 LLIWV-ETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEEEE-S----HHHHHH-----S-EEEEEE
T ss_pred EEEEE-ccccCHHHHHHHhhcCCCEEEEee
Confidence 88876 478899999999999999998775
No 260
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.46 E-value=2.7e+02 Score=25.18 Aligned_cols=81 Identities=16% Similarity=0.045 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH-HHHHhcCeEEecCCCCCCcHHHHHHHHcC
Q 012256 247 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMG 325 (467)
Q Consensus 247 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~-~~~~~adv~v~ps~~e~~~~~~lEAma~G 325 (467)
-+++++.+++++|++ ++-+|.--+.++.+. +.+.|-+..+.+.++..- +.-...++.++|.-.. |.-+.+|+.+|
T Consensus 53 ~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~-a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~T--ptEi~~a~~~G 128 (212)
T PRK05718 53 ALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQ-AIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVST--PSELMLGMELG 128 (212)
T ss_pred HHHHHHHHHHHCCCC-EEEEeeccCHHHHHH-HHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCC--HHHHHHHHHCC
Confidence 345556666667764 444554444444444 334454544445555522 5555667777774321 23377788888
Q ss_pred CeEEEe
Q 012256 326 KIVVCA 331 (467)
Q Consensus 326 ~PVV~t 331 (467)
..+|--
T Consensus 129 a~~vKl 134 (212)
T PRK05718 129 LRTFKF 134 (212)
T ss_pred CCEEEE
Confidence 877654
No 261
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=33.34 E-value=81 Score=25.01 Aligned_cols=42 Identities=26% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCeEEEEEecCCC----HHHHHHHHHhcCCeeEEe
Q 012256 248 LELLDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 289 (467)
Q Consensus 248 i~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~~~v~~~ 289 (467)
.+.+..+....|+..++|+|.|.. ..++++..++.|+.+++.
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVM 86 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEE
Confidence 445555555567788999998865 456777788888877765
No 262
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=33.27 E-value=4e+02 Score=24.91 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=22.1
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
|+++....... ..++.||.-+|.|+|+--.
T Consensus 159 d~iii~d~~~~-~~ai~Ea~kl~IPiIaivD 188 (258)
T PRK05299 159 DALFVVDPNKE-HIAVKEARKLGIPVVAIVD 188 (258)
T ss_pred CEEEEeCCCcc-HHHHHHHHHhCCCEEEEee
Confidence 66665543322 3789999999999999765
No 263
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=33.07 E-value=3.1e+02 Score=23.41 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=74.9
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHhc---CeEEecCCCCCCcHHHHHHHHcCC----eEEE
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDY---KVFLNPSTTDVVCTTTAEALAMGK----IVVC 330 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~a---dv~v~ps~~e~~~~~~lEAma~G~----PVV~ 330 (467)
|+-.++|+-|... ...+....+..|..+.....+...-...+.. -.+|---...+.|+.++|++..-. -||.
T Consensus 8 pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvL 87 (182)
T COG4567 8 PDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVL 87 (182)
T ss_pred CCceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEE
Confidence 4446778776444 3445555666676666655543332333332 333434445689999999997665 4777
Q ss_pred eCCCCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCCCCc--cHHHHHcCCHHHHHHHHHH
Q 012256 331 ANHPSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEPALP--TEAQRHQLSWESATERFLQ 388 (467)
Q Consensus 331 t~~g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~~--~~~~~~~~sw~~~~~~~~~ 388 (467)
|..+.. +-++-|..-++.. |.+++..++.+--.+..... ......+..||.+-+-|.+
T Consensus 88 TGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~~d~~~~~~~~pmS~~rl~WEhIqrvl~e 153 (182)
T COG4567 88 TGYASIATAVEAVKLGACDYLAKPADADDILAALLRREPDEDTAPPENPMSADRLRWEHIQRVLEE 153 (182)
T ss_pred ecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcCCCcccCCCCCCCchhHhhHHHHHHHHHH
Confidence 777652 4555554345555 99998888877532222211 1122346788876554443
No 264
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=32.95 E-value=3.5e+02 Score=25.28 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=57.1
Q ss_pred EEeccccccCHHHHHHHHHHHHhhcCCeEEEE-------------EecCCC-HHHHHHHHHhcCCeeEEecC-CCCHHHH
Q 012256 234 YIGKMVWSKGYKELLELLDDHQKELAGLEVDL-------------YGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLI 298 (467)
Q Consensus 234 ~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i-------------~G~g~~-~~~l~~~~~~~~~~v~~~g~-~~~~~~~ 298 (467)
+++...--...+.+++.+..+++.... +.. -|.|.+ ...+++.+++.|+.+.-... ..+.+.+
T Consensus 28 ~IAGpc~ie~~~~~~~~A~~lk~~~~k--~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l 105 (260)
T TIGR01361 28 VIAGPCSVESEEQIMETARFVKEAGAK--ILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIV 105 (260)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHHHH--hccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHH
Confidence 455456666788888888888754322 222 122221 34477777777765433222 2333344
Q ss_pred HHhcCeEEecCCCCCCcHHHHHHH-HcCCeEEEeCC
Q 012256 299 FHDYKVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH 333 (467)
Q Consensus 299 ~~~adv~v~ps~~e~~~~~~lEAm-a~G~PVV~t~~ 333 (467)
...+|++-.+|. +..-..+++++ ..|+||+.++.
T Consensus 106 ~~~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 106 AEYADILQIGAR-NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HhhCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCC
Confidence 455799999986 33344566655 57999999886
No 265
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=32.91 E-value=2.6e+02 Score=23.49 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=44.2
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHh-cCCeeEEecCCCCH
Q 012256 231 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LKIVVRVYPGRDHA 295 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~~~v~~~g~~~~~ 295 (467)
.++||...+. .-+...++.+..+++-.|+-+++++|=|-...+++++.+. .+.+++-+..-.++
T Consensus 61 ~vvfVSa~S~-~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~s~YP 125 (142)
T PF07801_consen 61 DVVFVSATSD-NHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNFSKYP 125 (142)
T ss_pred ccEEEEEecc-hHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCCccCc
Confidence 4667776543 3477777888888878999999999988887888877654 33455444433333
No 266
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.64 E-value=3.3e+02 Score=25.64 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCC-ccceEeeecCCCCCchHHHHHHhCCCCC
Q 012256 420 EEASAYVHFLASGFE-TSRRAFGAIPGSLHPDEELCKELGLVTP 462 (467)
Q Consensus 420 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 462 (467)
+.+...+..++.... ....+++.....-....+.+++.|+..|
T Consensus 185 ~~~~~~~~~~L~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p 228 (303)
T cd01539 185 AQAKDKMDALLLKYGDKIEAVIANNDAMALGAIEALQKYGYNKG 228 (303)
T ss_pred HHHHHHHHHHHHhcCCCccEEEECCchHHHHHHHHHHHcCCCcC
Confidence 334444444554432 2456666655544567888899998777
No 267
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.59 E-value=3.9e+02 Score=24.41 Aligned_cols=42 Identities=12% Similarity=0.024 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCCCCCCC
Q 012256 422 ASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPMS 464 (467)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 464 (467)
+...+..++...+....+++..........+.+++.|+. .|+
T Consensus 170 ~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~-~di 211 (271)
T cd06312 170 VASRIAAYLRANPDVDAVLTLGAPSAAPAAKALKQAGLK-GKV 211 (271)
T ss_pred HHHHHHHHHHhCCCccEEEEeCCccchHHHHHHHhcCCC-CCe
Confidence 333444444433335677777777777788889999986 443
No 268
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.27 E-value=60 Score=31.26 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecC
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLS 49 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~ 49 (467)
+|+.|.++.+.+.|...- -..-+..+..|.+.|..+|++++|||.
T Consensus 46 ~g~~V~ii~s~~~~~nd~-l~eLll~~~alr~~ga~~i~lViPYl~ 90 (309)
T PRK01259 46 RGKDVFIIQSTCAPTNDN-LMELLIMIDALKRASAGRITAVIPYFG 90 (309)
T ss_pred CCCEEEEECCCCCCCcHH-HHHHHHHHHHHHHcCCceEEEEeeccc
Confidence 456788887766553221 222333349999999888999999863
No 269
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=32.27 E-value=56 Score=25.48 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=20.5
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEee
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIP 46 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p 46 (467)
+++++|+++.. +-.....++.|.+.| -+|+++.|
T Consensus 5 l~~~~vlVvGg---------G~va~~k~~~Ll~~g-A~v~vis~ 38 (103)
T PF13241_consen 5 LKGKRVLVVGG---------GPVAARKARLLLEAG-AKVTVISP 38 (103)
T ss_dssp -TT-EEEEEEE---------SHHHHHHHHHHCCCT-BEEEEEES
T ss_pred cCCCEEEEECC---------CHHHHHHHHHHHhCC-CEEEEECC
Confidence 45778888832 334455679999999 34444444
No 270
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=31.96 E-value=3.5e+02 Score=25.06 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=67.8
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEec-------CCCHHHHHHHHHhcCCeeEEecC--CCCHH--HHH
Q 012256 231 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-------GEDFNQIQEAAEKLKIVVRVYPG--RDHAD--LIF 299 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~-------g~~~~~l~~~~~~~~~~v~~~g~--~~~~~--~~~ 299 (467)
.++|+|-+.-.-|...+-+-++.+++++ .+.|+|++. |-.++..++ ..+.|.++.-+|. .++.+ +++
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~-l~~~G~dviT~GNH~wd~~ei~~~i 79 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKE-LLEAGADVITLGNHTWDQKEILDFI 79 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHH-HHHhCCCEEecccccccchHHHHHh
Confidence 4899999999999999999999998765 467788773 222333443 4456777766666 46666 889
Q ss_pred HhcCeEEecCCC----CCCcHHHHHHHHcCCeEEEeCC
Q 012256 300 HDYKVFLNPSTT----DVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 300 ~~adv~v~ps~~----e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..++.+|-|.-+ -|.|..+++ .-|.-+-.++.
T Consensus 80 ~~~~~ilRP~N~p~~~~G~G~~~f~--~ng~ki~V~Nl 115 (266)
T COG1692 80 DNADRILRPANYPDGTPGKGSRIFK--INGKKLAVINL 115 (266)
T ss_pred hcccceeccCCCCCCCCcceEEEEE--eCCcEEEEEEe
Confidence 999999988643 344555555 44555555555
No 271
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.82 E-value=2.8e+02 Score=24.75 Aligned_cols=80 Identities=24% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH-HHHHhcCeEEecCCCCCCcHHHHHHHHcCC
Q 012256 248 LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGK 326 (467)
Q Consensus 248 i~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~-~~~~~adv~v~ps~~e~~~~~~lEAma~G~ 326 (467)
+++++.+++++|++ ++=+|.--+.+++++.. +.|-+..+.+.++.+- ++-+..++.++|.-. .|.-+.+|+.+|+
T Consensus 47 ~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~-~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~--TptEi~~A~~~G~ 122 (196)
T PF01081_consen 47 LEAIEALRKEFPDL-LVGAGTVLTAEQAEAAI-AAGAQFIVSPGFDPEVIEYAREYGIPYIPGVM--TPTEIMQALEAGA 122 (196)
T ss_dssp HHHHHHHHHHHTTS-EEEEES--SHHHHHHHH-HHT-SEEEESS--HHHHHHHHHHTSEEEEEES--SHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCC-eeEEEeccCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHHcCCcccCCcC--CHHHHHHHHHCCC
Confidence 45566666667875 44455555566666543 4555555555544433 677777888888321 2455778888888
Q ss_pred eEEEe
Q 012256 327 IVVCA 331 (467)
Q Consensus 327 PVV~t 331 (467)
.+|=-
T Consensus 123 ~~vK~ 127 (196)
T PF01081_consen 123 DIVKL 127 (196)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77643
No 272
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=31.75 E-value=3.1e+02 Score=26.01 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=21.1
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEE
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 329 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV 329 (467)
+++..+|++++......+.-..++.|..|.-+|
T Consensus 205 ~~l~~aDiVint~P~~ii~~~~l~~~k~~aliI 237 (287)
T TIGR02853 205 EKVAEIDIVINTIPALVLTADVLSKLPKHAVII 237 (287)
T ss_pred HHhccCCEEEECCChHHhCHHHHhcCCCCeEEE
Confidence 678899999987533333444566666665554
No 273
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.69 E-value=1.7e+02 Score=27.05 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.7
Q ss_pred HHHHHHHHcCCeEEEeCC
Q 012256 316 TTTAEALAMGKIVVCANH 333 (467)
Q Consensus 316 ~~~lEAma~G~PVV~t~~ 333 (467)
.++.||--+|.|||+--.
T Consensus 170 iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 170 IAVKEANKLGIPVVALVD 187 (252)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 589999999999998654
No 274
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=31.55 E-value=3.7e+02 Score=24.11 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=22.7
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 012256 231 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED 271 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~ 271 (467)
.++=+|++....=++.+++ =+...+++.+.++|+|..
T Consensus 6 g~ik~GniGts~v~dlllD----ErAdRedi~vrVvgsgaK 42 (277)
T COG1927 6 GFIKCGNIGTSPVVDLLLD----ERADREDIEVRVVGSGAK 42 (277)
T ss_pred EEEEecccchHHHHHHHHH----hhcccCCceEEEeccccc
Confidence 3555676654443444433 334468999999998755
No 275
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=31.39 E-value=71 Score=30.93 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=30.3
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
+|+.+.++.+.+.|...- -..-+..+..|.+.|..+|++++||+
T Consensus 52 ~g~~V~iiqs~~~p~nd~-lmeLl~~~~alr~~~a~~i~~ViPYl 95 (319)
T PRK04923 52 RRQEVFVIQPTCAPSAEN-LMELLVLIDALKRASAASVTAVIPYF 95 (319)
T ss_pred CCCeEEEEecCCCCCchH-HHHHHHHHHHHHHcCCcEEEEEeecc
Confidence 467788887766563222 22333334999999988899999986
No 276
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=31.38 E-value=64 Score=30.72 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=23.6
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhcC
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDG 37 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G 37 (467)
++|++++....|+..- +..+...+ +.|.+.|
T Consensus 5 ~~v~~~~g~~~~~~~~-~~~s~~~i~~al~~~g 36 (304)
T PRK01372 5 GKVAVLMGGTSAEREV-SLNSGAAVLAALREAG 36 (304)
T ss_pred cEEEEEeCCCCCCceE-eHHhHHHHHHHHHHCC
Confidence 4599999888777665 44555555 9999999
No 277
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=31.07 E-value=85 Score=27.48 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=39.9
Q ss_pred hcCeEEecCCCCCCc----------HHHHHHHHcC-CeEEEeCCCCcccc----ccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 301 DYKVFLNPSTTDVVC----------TTTAEALAMG-KIVVCANHPSNDFF----KQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 301 ~adv~v~ps~~e~~~----------~~~lEAma~G-~PVV~t~~g~~e~v----~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
.+++.++.+++-.|+ .+.+||--.+ .|||.|..++..++ ....+|++++ ..++=.+-++.-|-
T Consensus 10 s~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnSLP 89 (245)
T KOG3185|consen 10 SNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNSLP 89 (245)
T ss_pred CcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhcCC
Confidence 346666666555544 3678887666 49999999764433 3457899998 33443445555444
Q ss_pred c
Q 012256 364 E 364 (467)
Q Consensus 364 ~ 364 (467)
+
T Consensus 90 d 90 (245)
T KOG3185|consen 90 D 90 (245)
T ss_pred c
Confidence 4
No 278
>PLN02562 UDP-glycosyltransferase
Probab=31.05 E-value=73 Score=32.50 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=29.2
Q ss_pred CCCCC-ceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeee
Q 012256 1 MDRKQ-QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPW 47 (467)
Q Consensus 1 m~Mk~-~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~ 47 (467)
|.|-. .||+++ |+..=+.++++..+ +.|+.+| ..||++++.
T Consensus 1 ~~~~~~~HVVlv-----PfPaqGHi~PmL~LAk~Las~G-~~VT~vtt~ 43 (448)
T PLN02562 1 MKVTQRPKIILV-----PYPAQGHVTPMLKLASAFLSRG-FEPVVITPE 43 (448)
T ss_pred CCCCCCcEEEEE-----cCccccCHHHHHHHHHHHHhCC-CEEEEEeCc
Confidence 55533 488887 33333488998886 9999999 778887765
No 279
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=31.00 E-value=3.5e+02 Score=25.43 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=46.9
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 259 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
+++++..+-+. +.+..++.+++++.. ..+...++++..+|+++..+......-...+++..|++|++...+
T Consensus 30 ~~~el~aV~dr-~~~~a~~~a~~~g~~----~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 30 PGLTLSAVAVR-DPQRHADFIWGLRRP----PPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred CCeEEEEEECC-CHHHHHHHHHhcCCC----cccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecch
Confidence 56777655543 334455555554411 123455578888999998877766666678889999999986554
No 280
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=30.91 E-value=66 Score=30.84 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=20.8
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEee
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIP 46 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p 46 (467)
|+|| |+|+.... --...+.+|++.| ++|+++..
T Consensus 1 ~~m~---I~IiGaGa---------iG~~~a~~L~~~G-~~V~lv~r 33 (305)
T PRK05708 1 MSMT---WHILGAGS---------LGSLWACRLARAG-LPVRLILR 33 (305)
T ss_pred CCce---EEEECCCH---------HHHHHHHHHHhCC-CCeEEEEe
Confidence 6788 99985443 2234467789999 44444444
No 281
>PLN02208 glycosyltransferase family protein
Probab=30.73 E-value=67 Score=32.72 Aligned_cols=36 Identities=33% Similarity=0.650 Sum_probs=27.0
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeee
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPW 47 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~ 47 (467)
.||+++ |+..-+.++++..+ +.|+.+| ++||++++.
T Consensus 5 ~hvv~~-----P~paqGHi~P~l~LAk~La~~G-~~VT~vtt~ 41 (442)
T PLN02208 5 FHAFMF-----PWFAFGHMIPFLHLANKLAEKG-HRVTFLLPK 41 (442)
T ss_pred CEEEEe-----cCccccHHHHHHHHHHHHHhCC-CEEEEEecc
Confidence 678776 44445589998886 9999999 777777653
No 282
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=30.19 E-value=4.9e+02 Score=26.59 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=73.8
Q ss_pred EEEEe---ccccccCHHHHHHHHHHHHhhcCCeEEEEEecC--CCHHHHHHHHHhcCCeeEEecCCCCHH----------
Q 012256 232 AYYIG---KMVWSKGYKELLELLDDHQKELAGLEVDLYGNG--EDFNQIQEAAEKLKIVVRVYPGRDHAD---------- 296 (467)
Q Consensus 232 il~vG---rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g--~~~~~l~~~~~~~~~~v~~~g~~~~~~---------- 296 (467)
.+++| ......+++.++.+.... ....+.-|.| .+-..+-+.+++.+ +.|.|.-...-
T Consensus 48 av~i~~~~~~~syl~i~~ii~~a~~~-----gadai~pGygflsen~~fae~~~~~g--l~fiGP~~~~i~~mgdK~~ar 120 (449)
T COG0439 48 AVCIGPAPSADSYLNIDAIIAAAEET-----GADAIHPGYGFLSENAAFAEACAEAG--LTFIGPSAEAIRRMGDKITAR 120 (449)
T ss_pred EEEcCCccchhhhhhHHHHHHHHHhc-----CCceEcccchhhhCCHHHHHHHHHcC--CeeeCcCHHHHHHhhhHHHHH
Confidence 44555 233456677777666543 3445666665 55566777777766 55555432111
Q ss_pred HHHHhcCeEEecCCCCCCcH----HHHHHHHcCCeEEEeCC-CCccccccCCCE-EeeCCHHHHHHHHHHHHhcCC
Q 012256 297 LIFHDYKVFLNPSTTDVVCT----TTAEALAMGKIVVCANH-PSNDFFKQFPNC-RTYDDRNGFVEATLKALAEEP 366 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~----~~lEAma~G~PVV~t~~-g~~e~v~~~~~g-~~~~~~~~l~~~i~~~l~~~~ 366 (467)
.+++.+.|-+.|-. ++..- ..--|-.-|-|||.=.. |+ +.-| .++.+.+++.+++..+.....
T Consensus 121 ~~~~~aGVP~vpgs-~~~~~~~ee~~~~a~~iGyPVivKa~~Gg------Gg~G~r~v~~~~el~~a~~~~~~ea~ 189 (449)
T COG0439 121 RLMAKAGVPVVPGS-DGAVADNEEALAIAEEIGYPVIVKAAAGG------GGRGMRVVRNEEELEAAFEAARGEAE 189 (449)
T ss_pred HHHHHcCCCcCCCC-CCCcCCHHHHHHHHHHcCCCEEEEECCCC------CcccEEEECCHHHHHHHHHHHHHHHH
Confidence 78888999988855 33211 12223456789998776 32 2233 677799999999988876533
No 283
>PRK09739 hypothetical protein; Provisional
Probab=29.96 E-value=88 Score=27.75 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=19.0
Q ss_pred CC-CCCceEEEEEeccCCccccccchhHHH-H-HHhhhcC
Q 012256 1 MD-RKQQHIAIFTTASLPWLTGTAVNPLFR-A-AYLAKDG 37 (467)
Q Consensus 1 m~-Mk~~~I~iv~~~~~P~~~G~~~~~~~~-~-~~L~~~G 37 (467)
|+ || |++|..+. ...+.. ..+.. . +.|.+.|
T Consensus 1 ~~mmk---iliI~~sp--~~~s~s-~~l~~~~~~~~~~~g 34 (199)
T PRK09739 1 MQSMR---IYLVWAHP--RHDSLT-AKVAEAIHQRAQERG 34 (199)
T ss_pred CCCce---EEEEEcCC--CCCCcH-HHHHHHHHHHHHHCC
Confidence 66 45 99998774 334422 33333 3 7888888
No 284
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=29.77 E-value=1e+02 Score=28.95 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
++...+|++|-.|..+..--.+..|+..|+|||+...|.
T Consensus 64 ~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 64 AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred HhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 443457999988877777778999999999999866653
No 285
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=29.71 E-value=70 Score=27.42 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=30.8
Q ss_pred hcCeEEecCCC----CC--CcHHHHHHHHcCCeEEEeCCCC-ccccccCCCE
Q 012256 301 DYKVFLNPSTT----DV--VCTTTAEALAMGKIVVCANHPS-NDFFKQFPNC 345 (467)
Q Consensus 301 ~adv~v~ps~~----e~--~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g 345 (467)
.+|++|+--+- || |--.+.+|++.|+||+++-... .+-+.+...|
T Consensus 93 ~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l~~W~~Fagg 144 (159)
T PF10649_consen 93 GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNLEAWRAFAGG 144 (159)
T ss_pred CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHhcCC
Confidence 35998877442 44 4456999999999999988754 3544444333
No 286
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=29.69 E-value=71 Score=23.60 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=33.5
Q ss_pred cCEEEEcCHh-hHHhhhcccccc----cccCCCccccchhhHHHhhcCCCCCCceEEEEeccc
Q 012256 182 CHKVIRLSAA-TQEYANSIICNV----HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMV 239 (467)
Q Consensus 182 ~d~vi~~S~~-~~~~~~~~i~~i----~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~ 239 (467)
+|.|++.-.. ...+.+.+..++ .++++..+.+....... .....--|.|||++-
T Consensus 19 ~~~iFt~D~~~~~~~~~~G~~~V~yLPLAa~~~~~~p~~~~~~~----~~~~~~dIsFVG~~y 77 (79)
T PF12996_consen 19 YDYIFTFDRSFVEEYRNLGAENVFYLPLAANPERFRPIPVDPEE----RKKYECDISFVGSLY 77 (79)
T ss_pred CCEEEEECHHHHHHHHHcCCCCEEEccccCCHHHhCcccCCccc----ccccCCCEEEeCcCc
Confidence 6877777754 445666666666 38888888875543111 111223599999864
No 287
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=29.51 E-value=4.3e+02 Score=25.64 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=24.8
Q ss_pred hcCeEEe-cCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 301 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 301 ~adv~v~-ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
..|.+++ |...+.+.-.+-+|+..|+|||+.+...
T Consensus 80 ~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~ 115 (336)
T PRK15408 80 GYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDT 115 (336)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 3466555 4334455567888999999999998753
No 288
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=29.38 E-value=1e+02 Score=25.75 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHHhc-----CeEEecCCCCCCcHHHHHHHH-cCCeEEEeCC---CCcc-----
Q 012256 274 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEALA-MGKIVVCANH---PSND----- 337 (467)
Q Consensus 274 ~l~~~~~~~~~~v~~~g~~~~~~--~~~~~a-----dv~v~ps~~e~~~~~~lEAma-~G~PVV~t~~---g~~e----- 337 (467)
.+++.+.++|..+.|.-.=...+ +.++.+ .+.++|.-+--.+.++.+|++ .++|+|=--. -.+|
T Consensus 33 ~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~RE~fR~~ 112 (140)
T PF01220_consen 33 KCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHAREEFRHH 112 (140)
T ss_dssp HHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGGS-GGGG-
T ss_pred HHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCcccccccccc
Confidence 35555666666666653322222 333333 456789877778899999975 5779885433 2244
Q ss_pred -ccccCCCEEeeC-CHHHHHHHHHHHH
Q 012256 338 -FFKQFPNCRTYD-DRNGFVEATLKAL 362 (467)
Q Consensus 338 -~v~~~~~g~~~~-~~~~l~~~i~~~l 362 (467)
++.+...|.+.- -.+...-++..++
T Consensus 113 S~~s~~~~g~I~G~G~~gY~lAl~al~ 139 (140)
T PF01220_consen 113 SVISPVAVGVISGFGADGYLLALEALV 139 (140)
T ss_dssp -SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccccEEEEEeCCHHHHHHHHHHHh
Confidence 333444566655 5566666665543
No 289
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=29.32 E-value=1.8e+02 Score=25.73 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=43.9
Q ss_pred EEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCC-----------CCcHHHHHHHHcCCeEEEe
Q 012256 263 VDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD-----------VVCTTTAEALAMGKIVVCA 331 (467)
Q Consensus 263 l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e-----------~~~~~~lEAma~G~PVV~t 331 (467)
++.+|+......+++..+..+.++.+.-...+ ...+|.+++|.-.. ++--.+.++...|+||++.
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 44555555566777777777766666644333 45678888875431 1223477778889999987
Q ss_pred CCCC
Q 012256 332 NHPS 335 (467)
Q Consensus 332 ~~g~ 335 (467)
=.|.
T Consensus 79 C~G~ 82 (194)
T cd01750 79 CGGY 82 (194)
T ss_pred CHHH
Confidence 7664
No 290
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=28.76 E-value=85 Score=22.36 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=42.4
Q ss_pred cCCeEEEEEe-cCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEe
Q 012256 258 LAGLEVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 331 (467)
Q Consensus 258 ~~~~~l~i~G-~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t 331 (467)
+.++.+.|.| +..+++.+++.++.+|-.+ .. ..-...+.+|.... ........+|.+.|.|+|..
T Consensus 6 F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v--~~------~~~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~ 71 (78)
T PF00533_consen 6 FEGCTFCISGFDSDEREELEQLIKKHGGTV--SN------SFSKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSP 71 (78)
T ss_dssp TTTEEEEESSTSSSHHHHHHHHHHHTTEEE--ES------SSSTTSSEEEESSS-HCCCHHHHHHHHTTSEEEET
T ss_pred CCCEEEEEccCCCCCHHHHHHHHHHcCCEE--Ee------ecccCcEEEEeCCC-CCccHHHHHHHHCCCeEecH
Confidence 3577888833 2334778999898887443 11 23445566665533 34566799999999999965
No 291
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=28.76 E-value=2.3e+02 Score=27.59 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=46.4
Q ss_pred eEEecCCCCHH----HHHHhcCeEEecCCCCC-CcHHHHHH-----HHcCCeEEEeCC--CCc-cccccCCCEEeeCCHH
Q 012256 286 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PSN-DFFKQFPNCRTYDDRN 352 (467)
Q Consensus 286 v~~~g~~~~~~----~~~~~adv~v~ps~~e~-~~~~~lEA-----ma~G~PVV~t~~--g~~-e~v~~~~~g~~~~~~~ 352 (467)
+.+.|.++.+. ..+..+|++|--....| .|++++.. +..|+|+|-|.. |.. ++...+. -|+.
T Consensus 240 ~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkg~-----A~~~ 314 (332)
T PRK03743 240 INVEGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFDIAGTGK-----ASSV 314 (332)
T ss_pred CcccCCCCchhhcccccccCCCEEEEcccccCChhheecccCCceEEecCCCeeEeCCCCcchhhhhcCCC-----CCHH
Confidence 45569887777 55556798886533332 23333322 456999998887 443 6654432 2899
Q ss_pred HHHHHHHHHHh
Q 012256 353 GFVEATLKALA 363 (467)
Q Consensus 353 ~l~~~i~~~l~ 363 (467)
+|.+||.-+.+
T Consensus 315 S~~~Ai~lA~~ 325 (332)
T PRK03743 315 SMEEAILLAAK 325 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 292
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=28.31 E-value=2.8e+02 Score=22.60 Aligned_cols=47 Identities=26% Similarity=0.209 Sum_probs=29.5
Q ss_pred EEEEEecC----CCHHHHHHHHHhcCCeeE---------------Ee---cCCCCHH--HHHHhcCeEEec
Q 012256 262 EVDLYGNG----EDFNQIQEAAEKLKIVVR---------------VY---PGRDHAD--LIFHDYKVFLNP 308 (467)
Q Consensus 262 ~l~i~G~g----~~~~~l~~~~~~~~~~v~---------------~~---g~~~~~~--~~~~~adv~v~p 308 (467)
.++++|.| ...+++.++++.++..+- +. |...... ++++.||+++.-
T Consensus 14 P~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 14 PVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp EEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred EEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEE
Confidence 37777754 336677778777776542 22 2223344 889999999865
No 293
>PRK07236 hypothetical protein; Provisional
Probab=28.27 E-value=79 Score=31.33 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=18.6
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
|+..+|+|| |+++..+..|..|++.|
T Consensus 4 ~~~~~ViIV---------GaG~aGl~~A~~L~~~G 29 (386)
T PRK07236 4 MSGPRAVVI---------GGSLGGLFAALLLRRAG 29 (386)
T ss_pred CCCCeEEEE---------CCCHHHHHHHHHHHhCC
Confidence 444569888 33555666678999999
No 294
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=28.25 E-value=3.4e+02 Score=26.32 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=35.6
Q ss_pred EEEEEecCCCHHHHHHHHHhcCCeeEEecC--------------CCCHHHHHHhcCeEEe--cCCCCCCcH---HHHHHH
Q 012256 262 EVDLYGNGEDFNQIQEAAEKLKIVVRVYPG--------------RDHADLIFHDYKVFLN--PSTTDVVCT---TTAEAL 322 (467)
Q Consensus 262 ~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~--------------~~~~~~~~~~adv~v~--ps~~e~~~~---~~lEAm 322 (467)
++-|+|-|.--..+-+.++.+|.++..+.. +..-+++++.||++++ |...|+.++ ..+..|
T Consensus 144 TvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 144 TVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhC
Confidence 455555544444444445555554444422 1223389999999874 555676655 455555
Q ss_pred HcCC
Q 012256 323 AMGK 326 (467)
Q Consensus 323 a~G~ 326 (467)
=-|.
T Consensus 224 K~ga 227 (324)
T COG0111 224 KPGA 227 (324)
T ss_pred CCCe
Confidence 4444
No 295
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.12 E-value=5.1e+02 Score=24.32 Aligned_cols=99 Identities=9% Similarity=0.048 Sum_probs=60.1
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEe-----------cCCC---HHHHHHHHHhcCCeeEEecC-CCCHH
Q 012256 232 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYG-----------NGED---FNQIQEAAEKLKIVVRVYPG-RDHAD 296 (467)
Q Consensus 232 il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-----------~g~~---~~~l~~~~~~~~~~v~~~g~-~~~~~ 296 (467)
++.++...--...+.+++.++.+++. ..+++..| .|.. ...+.+.+++.|+.+.-... ..+.+
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~ 105 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVE 105 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHH
Confidence 44555455566788899999998875 45677777 1111 34466667777765332211 22222
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHH-HHHcCCeEEEeCC
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAE-ALAMGKIVVCANH 333 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lE-Ama~G~PVV~t~~ 333 (467)
.+...+|++-.+|.. .....+++ +...|+||+.++.
T Consensus 106 ~l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 106 EVADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 333457999999864 22233444 4567999999887
No 296
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.10 E-value=94 Score=30.11 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
+|+.|.++.+...|...- -+.-+..+..|.+.|..+|++++|||
T Consensus 51 rg~dV~iv~s~~~~~nd~-lmelll~~~alr~~~a~~i~~V~PYl 94 (320)
T PRK02269 51 RGHHVFILQSTSSPVNDN-LMEILIMVDALKRASAESINVVMPYY 94 (320)
T ss_pred CCCEEEEEecCCCCccch-HHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 466788887766553221 33333344999999988999999985
No 297
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.08 E-value=81 Score=30.72 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
+|+.+.++.+.+.|.-.- -+.-+..+..|.+.|..+|++++||+
T Consensus 67 rg~~V~ivqs~~~p~nd~-l~eLll~~~alr~~ga~ri~~ViPYl 110 (330)
T PRK02812 67 RGCDVYLIQPTCAPVNDH-LMELLIMVDACRRASARQITAVIPYY 110 (330)
T ss_pred CCCEEEEECCCCCCccHH-HHHHHHHHHHHHHhCCceEEEEEecc
Confidence 467788888866553222 22333334999999988999999986
No 298
>PLN03007 UDP-glucosyltransferase family protein
Probab=28.03 E-value=88 Score=32.29 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=26.8
Q ss_pred CceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeee
Q 012256 5 QQHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPW 47 (467)
Q Consensus 5 ~~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~ 47 (467)
+.||++++ +.+-+.++++..+ +.|+.+| ++||.+++.
T Consensus 5 ~~hVvlvp-----~pa~GHi~P~L~LAk~L~~rG-~~VT~vtt~ 42 (482)
T PLN03007 5 KLHILFFP-----FMAHGHMIPTLDMAKLFSSRG-AKSTILTTP 42 (482)
T ss_pred CcEEEEEC-----CCccccHHHHHHHHHHHHhCC-CEEEEEECC
Confidence 35787773 2233488998876 9999999 777777764
No 299
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=27.96 E-value=1e+02 Score=21.26 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=36.8
Q ss_pred EEEEEe-cCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEe
Q 012256 262 EVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 331 (467)
Q Consensus 262 ~l~i~G-~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t 331 (467)
.+.+-| .+++++.+.+++..+|- .+.+.+ -.....+|. .+..|-+.-.|...|+|||..
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg--~~~~~l------t~~~THLI~---~~~~~~K~~~A~~~gi~vV~~ 61 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGG--KYSKDL------TKKTTHLIC---SSPEGKKYRKAKEWGIPVVSP 61 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT---EEESSS------STT-SEEEE---ES--HHHHHHHHHCTSEEEEH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCC--EEeccc------cCCceEEEE---eCCCcHHHHHHHHCCCcEECC
Confidence 355666 45567888888887763 223333 224455555 455678899999999999974
No 300
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.84 E-value=91 Score=30.27 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=29.8
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
+|..|.++.+.+.|...- -+.-+..+..|.+.|..+|++++|||
T Consensus 55 ~g~dV~ii~s~~~~~nd~-l~eLll~~~alr~~~a~~i~lViPYl 98 (323)
T PRK02458 55 RGDDIYIIQSTSFPVNDH-LWELLIMIDACKRASANTVNVVLPYF 98 (323)
T ss_pred CCCeEEEEecCCCCCchH-HHHHHHHHHHHHHcCCceEEEEEecc
Confidence 456677777766553222 33333334999999988999999986
No 301
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=27.74 E-value=1.5e+02 Score=24.72 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=17.2
Q ss_pred EEEEEeccCCccccccchhHHHH
Q 012256 8 IAIFTTASLPWLTGTAVNPLFRA 30 (467)
Q Consensus 8 I~iv~~~~~P~~~G~~~~~~~~~ 30 (467)
|+++..+|-|-..| ....+.+|
T Consensus 3 iai~~GSFDPih~G-Hl~ii~~A 24 (140)
T PRK13964 3 IAIYPGSFDPFHKG-HLNILKKA 24 (140)
T ss_pred EEEEeeeeCCCCHH-HHHHHHHH
Confidence 99999999998888 65555555
No 302
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=27.54 E-value=3.7e+02 Score=24.12 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=57.1
Q ss_pred CCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCe--eEEecCCCCHHHHHHhcC
Q 012256 228 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIV--VRVYPGRDHADLIFHDYK 303 (467)
Q Consensus 228 ~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~--v~~~g~~~~~~~~~~~ad 303 (467)
...+++++|. -..|=|-++ +...|....-++.++..|+... .+......+.++.. +.+.... .....+|
T Consensus 49 ~~~v~vlcG~--GnNGGDG~V-aAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~----~~~~~~d 121 (203)
T COG0062 49 ARRVLVLCGP--GNNGGDGLV-AARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELE----DEPESAD 121 (203)
T ss_pred CCEEEEEECC--CCccHHHHH-HHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccc----cccccCC
Confidence 3557888885 345666665 5556666556788888886553 23333332223321 1111111 1466778
Q ss_pred eEEec--------CCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 304 VFLNP--------STTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 304 v~v~p--------s~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
+.|=. ...|++...+-..=+.|+|||+-|.|+
T Consensus 122 vIVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 122 VIVDALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred EEEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 87743 223444444444446999999999965
No 303
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=27.53 E-value=2.8e+02 Score=26.01 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=21.4
Q ss_pred EEEEEeccCCccccccchhHHHHHHhhhcCCccEEEE--eeec
Q 012256 8 IAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLV--IPWL 48 (467)
Q Consensus 8 I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~--~p~l 48 (467)
..|||..=.-.. |.++.......-|..+| .+|+.+ =|||
T Consensus 3 yIfVtGGV~Sgl-GKGi~aaSig~lLk~~G-~~V~~~K~DPYl 43 (276)
T PF06418_consen 3 YIFVTGGVVSGL-GKGITAASIGRLLKSRG-YKVTMIKIDPYL 43 (276)
T ss_dssp EEEEEE-SSSSS-SHHHHHHHHHHHHHCTT---EEEEEEE-SS
T ss_pred EEEEeCCccccc-cHHHHHHHHHHHHHhCC-eeeeeeeecccc
Confidence 777776653332 33444444458888899 788877 4554
No 304
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=27.28 E-value=96 Score=31.69 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=27.0
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecCC
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLSL 50 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~ 50 (467)
++|.|.|++|.|... +..+ ...+++| .+|++++|....
T Consensus 265 ~~i~I~TPYF~p~~~------l~~~L~~a~~rG-v~V~Ii~~~~~a 303 (451)
T PRK09428 265 QKLTICTPYFNLPAI------LVRNIIRLLRRG-KKVEIIVGDKTA 303 (451)
T ss_pred cEEEEEeCCcCCCHH------HHHHHHHHHhcC-CcEEEEcCCccc
Confidence 469999999988733 3333 5566778 789999887543
No 305
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=27.19 E-value=74 Score=26.76 Aligned_cols=32 Identities=25% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCCceEEEEEeccCCccccccchhHHHH-HHhhhcC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDG 37 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G 37 (467)
|++.||+|+.+.|.+..+. .-+..+ +.|.+.|
T Consensus 1 ~~~~ri~IV~s~~n~~i~~---~ll~~a~~~l~~~g 33 (144)
T PF00885_consen 1 MSGLRIAIVVSRFNEEITD---RLLEGALEELKRHG 33 (144)
T ss_dssp -TTEEEEEEEESTTHHHHH---HHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEEeccHHHHH---HHHHHHHHHHHHcC
Confidence 3445599999999777665 334445 8899888
No 306
>PLN00016 RNA-binding protein; Provisional
Probab=27.16 E-value=77 Score=31.34 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=18.0
Q ss_pred eEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
+|+|+++++ ||++......++.|.++|
T Consensus 54 ~VLVt~~~~----GatG~iG~~lv~~L~~~G 80 (378)
T PLN00016 54 KVLIVNTNS----GGHAFIGFYLAKELVKAG 80 (378)
T ss_pred eEEEEeccC----CCceeEhHHHHHHHHHCC
Confidence 498886665 344444455568899999
No 307
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=27.06 E-value=5.2e+02 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=21.0
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
|+.+..... .--.++.||.-+|.|||+--.
T Consensus 154 d~viv~d~~-~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 154 DLLFVIDTN-KEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred CEEEEeCCc-cchHHHHHHHHcCCCEEEEee
Confidence 554443322 236789999999999998655
No 308
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=26.96 E-value=2.7e+02 Score=27.02 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=46.4
Q ss_pred eEEecCCCCHH----HHHHhcCeEEecCCCCC-CcHHHHHH-----HHcCCeEEEeCC--CCc-cccccCCCEEeeCCHH
Q 012256 286 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PSN-DFFKQFPNCRTYDDRN 352 (467)
Q Consensus 286 v~~~g~~~~~~----~~~~~adv~v~ps~~e~-~~~~~lEA-----ma~G~PVV~t~~--g~~-e~v~~~~~g~~~~~~~ 352 (467)
+.+.|.++.+. .....+|++|--....| .|++++.. +..|+|+|-|.. |.. ++...+. -|+.
T Consensus 233 ~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg~-----A~~~ 307 (320)
T TIGR00557 233 IDLIGPLPADTLFHPAALAKYDAVLAMYHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFDIAGKGK-----ADPG 307 (320)
T ss_pred CcccCCCCchhhcccccccCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCCC-----CCHH
Confidence 45668887776 44556798886533333 23343322 456999998887 443 5554432 2888
Q ss_pred HHHHHHHHHHh
Q 012256 353 GFVEATLKALA 363 (467)
Q Consensus 353 ~l~~~i~~~l~ 363 (467)
++.+||..+..
T Consensus 308 S~~~Ai~~A~~ 318 (320)
T TIGR00557 308 SLIAAIKLAIE 318 (320)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 309
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=26.93 E-value=6e+02 Score=24.80 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=70.3
Q ss_pred cCEEEEcCHh---hHHhhh-cccccccccCCCccccchhhHHH---hhc----CCCCCCceEEEEeccccccCHHHHHHH
Q 012256 182 CHKVIRLSAA---TQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---QQN----GTHAFAKGAYYIGKMVWSKGYKELLEL 250 (467)
Q Consensus 182 ~d~vi~~S~~---~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~~~----~~~~~~~~il~vGrl~~~Kg~~~li~a 250 (467)
+|.+++=... ..++.+ ..+++||+-+-+...|.+..... .+. +..-....|.|+|-+...+=...++.+
T Consensus 101 ~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~ 180 (338)
T PRK08192 101 SDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRL 180 (338)
T ss_pred CCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHH
Confidence 5877766532 233332 46788898775556665433221 111 112235789999976444556666666
Q ss_pred HHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 251 LDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 251 ~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
+.. ..++.+.+++.... .+.+.+.+++.+..+.+ ..+.++.+..|||+...+.
T Consensus 181 l~~----~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 181 LCM----YKNVSFTLVSPKELAMPDYVISDIENAGHKITI---TDQLEGNLDKADILYLTRI 235 (338)
T ss_pred HHH----hcCCEEEEECCccccCCHHHHHHHHHcCCeEEE---EcCHHHHHccCCEEEEcCc
Confidence 543 34678999996322 23444445554444433 2444588999999888643
No 310
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=26.55 E-value=92 Score=29.98 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=29.2
Q ss_pred CCceEEEE-EeccCCccccccchhHHHHHHhhhcCCccEEEEeeecC
Q 012256 4 KQQHIAIF-TTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLS 49 (467)
Q Consensus 4 k~~~I~iv-~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~ 49 (467)
+|+.+.++ .+.+.|. ...-+.-+..+..|.+.|..+|++++|||.
T Consensus 46 ~g~~v~iv~~s~~~~~-~~~l~el~~~~~a~r~~ga~~i~~v~PYl~ 91 (308)
T TIGR01251 46 RGKDVFIIQQSTSAPV-NDNLMELLIMIDALKRASAKSITAVIPYYG 91 (308)
T ss_pred CCCeEEEEeCCCCCCc-cHHHHHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 45678777 5555442 221223333349999999889999999963
No 311
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=26.23 E-value=94 Score=31.47 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
+|+.|.|+.+.+.|.-.- -+.-+..+..|.+.|..+|++++|||
T Consensus 165 rG~dV~IVqS~~~pvNd~-LmELLllidAlr~agAkrItlViPYl 208 (439)
T PTZ00145 165 RGKDVYIIQPTCPPVNEN-LIELLLMISTCRRASAKKITAVIPYY 208 (439)
T ss_pred CCCeEEEEecCCCCCcHH-HHHHHHHHHHHHHhccCeEEEEeecc
Confidence 466788888877663222 33334444999999988999999986
No 312
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=26.08 E-value=6.7e+02 Score=25.02 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=59.0
Q ss_pred EEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c
Q 012256 262 EVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N 336 (467)
Q Consensus 262 ~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~ 336 (467)
+++-.+..++..-.+..++.... ++.+.......+ ..++++|++|-.-+. +++=||+.|+|+|+-.... .
T Consensus 242 ~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~~K~ 316 (385)
T COG2327 242 TLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYDPKV 316 (385)
T ss_pred EeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeecHHH
Confidence 33444454454445555554442 333332222122 688899998855332 5788999999999988844 2
Q ss_pred c-ccccC-CCEEeeC----CHHHHHHHHHHHHhcCCC
Q 012256 337 D-FFKQF-PNCRTYD----DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 337 e-~v~~~-~~g~~~~----~~~~l~~~i~~~l~~~~~ 367 (467)
+ +..+. --++..+ +.+.+.+...+.+++.++
T Consensus 317 ~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~ 353 (385)
T COG2327 317 RGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLDE 353 (385)
T ss_pred HHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccHH
Confidence 3 33221 1223333 888888888887776543
No 313
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.05 E-value=3.8e+02 Score=22.19 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=39.3
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhh-cCCeEEEEEecC----CCHHHHHHHHHhcCCeeEEecCCCCHH
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKE-LAGLEVDLYGNG----EDFNQIQEAAEKLKIVVRVYPGRDHAD 296 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~-~~~~~l~i~G~g----~~~~~l~~~~~~~~~~v~~~g~~~~~~ 296 (467)
+.++.++.+.. .....+-+.+..+++. .+++.+++.|.. .+.....+..+++|....|-++.+.++
T Consensus 55 ~d~V~lS~~~~-~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~ 125 (137)
T PRK02261 55 ADAILVSSLYG-HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEE 125 (137)
T ss_pred CCEEEEcCccc-cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHH
Confidence 34777776544 4556666666777665 347766666642 224556667777886655555555544
No 314
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=25.79 E-value=93 Score=29.65 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=24.7
Q ss_pred CceEEEEEeccCCccccccchhHHHH-HHhhhcC
Q 012256 5 QQHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDG 37 (467)
Q Consensus 5 ~~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G 37 (467)
++||+++....-|+..- +..+.... +.|.+.|
T Consensus 3 ~~~i~vl~gg~s~e~~v-sl~s~~~v~~aL~~~g 35 (296)
T PRK14569 3 NEKIVVLYGGDSPEREV-SLKSGKAVLDSLISQG 35 (296)
T ss_pred CcEEEEEeCCCCCchHh-HHHHHHHHHHHHHHcC
Confidence 35799999888777665 55666665 9999999
No 315
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=25.77 E-value=2.4e+02 Score=28.67 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=49.4
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHH
Q 012256 240 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTT 317 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~ 317 (467)
-.+|++.+.+...++ .| +.+.+++......+++.....+...+++.+.+...++... +|++|+.----.--..
T Consensus 91 ag~Ni~lL~~q~~~f---~p--~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~p 165 (454)
T PLN02696 91 AGSNVTLLADQVRKF---KP--KLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKP 165 (454)
T ss_pred CCCCHHHHHHHHHHh---CC--CEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCccccchHH
Confidence 356777777777665 23 3455555444444444332111123444333333355553 4888877443222234
Q ss_pred HHHHHHcCCeEEEeCC
Q 012256 318 TAEALAMGKIVVCANH 333 (467)
Q Consensus 318 ~lEAma~G~PVV~t~~ 333 (467)
.++|+.+|+.|...+-
T Consensus 166 Tl~AIkaGK~VALANK 181 (454)
T PLN02696 166 TVAAIEAGKDIALANK 181 (454)
T ss_pred HHHHHHCCCcEEEecH
Confidence 6999999999888875
No 316
>PLN02240 UDP-glucose 4-epimerase
Probab=25.47 E-value=1e+02 Score=29.94 Aligned_cols=29 Identities=17% Similarity=0.026 Sum_probs=17.6
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
|+|++++|+|.... +.-....++.|.++|
T Consensus 1 ~~~~~~~vlItGat--------G~iG~~l~~~L~~~g 29 (352)
T PLN02240 1 MSLMGRTILVTGGA--------GYIGSHTVLQLLLAG 29 (352)
T ss_pred CCCCCCEEEEECCC--------ChHHHHHHHHHHHCC
Confidence 78776778765322 212233357888899
No 317
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=25.22 E-value=5.8e+02 Score=25.57 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=61.9
Q ss_pred cccCHHHHHHHHHHHHh-h-c-CCeEEEEEecCC--CHHHHHHHHHhcCCeeE-EecCCCCHH-HHHHhcCeEEecCCCC
Q 012256 240 WSKGYKELLELLDDHQK-E-L-AGLEVDLYGNGE--DFNQIQEAAEKLKIVVR-VYPGRDHAD-LIFHDYKVFLNPSTTD 312 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~-~-~-~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~-~~g~~~~~~-~~~~~adv~v~ps~~e 312 (467)
..+|++.+++++-.... . . .+-.+.|+|.-+ +..+++++.++.|+++. +++.-...+ ..+..+-..+. ..
T Consensus 130 ~~~G~~~~~~alv~~~~~~~~~~~~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lpd~~~~e~~~~~~~~~~~~---~~ 206 (407)
T TIGR01279 130 FTQGEDTVLAALVPFCPEAPASEQRALVLVGSVNDIVADQLRLELKQLGIPVVGFLPASHFTELPVIGPGTVVAP---LQ 206 (407)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCcEEEEeccChhhHHHHHHHHHHcCCeEEEEeCCCCcchhhhcCCCeEEEE---ec
Confidence 35778888876654432 1 1 124578899533 35779999999999876 554322222 11111111111 11
Q ss_pred CCcHHHHHHHH--cCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcC
Q 012256 313 VVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 313 ~~~~~~lEAma--~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
.+...+.++|. +|.|.+....+. -.++.+++..+|.+++..+
T Consensus 207 ~~~~~~A~~Le~~~GiP~~~~~~Pi-----------Gi~~T~~~l~~la~~~g~~ 250 (407)
T TIGR01279 207 PYLSDTATTLRRERGAKVLSAPFPF-----------GPDGTRRFLEAIAAEFGIE 250 (407)
T ss_pred hHHHHHHHHHHHHhCCccccCCCCc-----------CHHHHHHHHHHHHHHhCcC
Confidence 23335677774 688877654321 1114667777777776644
No 318
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.20 E-value=5e+02 Score=23.28 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH-HHHHhcCeEEecCCCCCCcHHHHHHHHc
Q 012256 246 ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAM 324 (467)
Q Consensus 246 ~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~-~~~~~adv~v~ps~~e~~~~~~lEAma~ 324 (467)
..+++++++++++|++ ++=+|.--+.++.++.+ +.|-+..+.+..+.+- +.-+..++.++|-- -.|.-+..|+.+
T Consensus 45 ~a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~a~-~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~--~TptEi~~A~~~ 120 (204)
T TIGR01182 45 VALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQAV-DAGAQFIVSPGLTPELAKHAQDHGIPIIPGV--ATPSEIMLALEL 120 (204)
T ss_pred cHHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHHcCCcEECCC--CCHHHHHHHHHC
Confidence 3445555555566653 34455555555655543 3443433334443322 66666677777721 134457777777
Q ss_pred CCeEE
Q 012256 325 GKIVV 329 (467)
Q Consensus 325 G~PVV 329 (467)
|..+|
T Consensus 121 Ga~~v 125 (204)
T TIGR01182 121 GITAL 125 (204)
T ss_pred CCCEE
Confidence 77665
No 319
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.05 E-value=7.1e+02 Score=24.98 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=80.9
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEec-CCC------HHHHHHHHHhcCC-eeEEe--cCCCCHH-----
Q 012256 232 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-GED------FNQIQEAAEKLKI-VVRVY--PGRDHAD----- 296 (467)
Q Consensus 232 il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~-g~~------~~~l~~~~~~~~~-~v~~~--g~~~~~~----- 296 (467)
+=|.|..+..+-...+.+.+.+.++. ++.++|+-. |.. .+++.+..+.... ++.|. ..+-+..
T Consensus 157 iP~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 157 VPFYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred CeeEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 34555666666666677777766654 556666652 222 2333333333332 23222 2222211
Q ss_pred HHHHhcCe--EEecCCCCC---CcHHHHHHHHcCCeEEEeCCCC-ccccccCCCE-Ee----eC-CHHHHHHHHHHHHhc
Q 012256 297 LIFHDYKV--FLNPSTTDV---VCTTTAEALAMGKIVVCANHPS-NDFFKQFPNC-RT----YD-DRNGFVEATLKALAE 364 (467)
Q Consensus 297 ~~~~~adv--~v~ps~~e~---~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g-~~----~~-~~~~l~~~i~~~l~~ 364 (467)
++=...|+ .+++-. +| -|-++---.|.++|||--.+|. .|.++....- |+ -- |.+.|.+.+.++..+
T Consensus 235 aFk~~vdvg~vIlTKl-DGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~ 313 (483)
T KOG0780|consen 235 AFKETVDVGAVILTKL-DGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKD 313 (483)
T ss_pred HHHHhhccceEEEEec-ccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 22222333 344422 22 1222222346799999988865 3544433211 22 12 889999999988743
Q ss_pred CCCCccH-HHHHcCCHHHHHHHHHHHHhc
Q 012256 365 EPALPTE-AQRHQLSWESATERFLQVAEL 392 (467)
Q Consensus 365 ~~~~~~~-~~~~~~sw~~~~~~~~~~~~~ 392 (467)
+...+-+ -..-+|+.....+++..+..+
T Consensus 314 d~~el~~kl~~gkFtlrd~y~Qfq~imkm 342 (483)
T KOG0780|consen 314 DAKELVEKLKQGKFTLRDFYDQFQNIMKM 342 (483)
T ss_pred hHHHHHHHHHhCCccHHHHHHHHHHHHhh
Confidence 3333322 223568888888877777664
No 320
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.70 E-value=5.2e+02 Score=23.29 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=34.6
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCC
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEP 366 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~ 366 (467)
.|.++..+.... .-.+.++...|.|||..+....+ .....+..++.+....+...+++...
T Consensus 60 vdgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~~~~---~~~~~V~~d~~~~~~~a~~~l~~~g~ 120 (268)
T cd06271 60 VDGVIISRTRPD-DPRVALLLERGFPFVTHGRTELG---DPHPWVDFDNEAAAYQAVRRLIALGH 120 (268)
T ss_pred CCEEEEecCCCC-ChHHHHHHhcCCCEEEECCcCCC---CCCCeEeeCcHHHHHHHHHHHHHcCC
Confidence 576665443322 22345566789999998653221 11122334566777777777776543
No 321
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=24.63 E-value=1e+02 Score=28.11 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=38.7
Q ss_pred eccccccC-HHHHHHHHHHHHhhcCCeEEEEEec-CCCHHHHH---HHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 236 GKMVWSKG-YKELLELLDDHQKELAGLEVDLYGN-GEDFNQIQ---EAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 236 Grl~~~Kg-~~~li~a~~~l~~~~~~~~l~i~G~-g~~~~~l~---~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
-.++|.|- .+...+.++.+++...+. ++|-|+ |-..+.+. +.+++..+.+.+.+ ...+.+...+|.+++||.
T Consensus 4 ~liDPdK~~~~~~~~~~~~~~~~gtda-i~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp--~~~~~i~~~aDa~l~~sv 80 (223)
T TIGR01768 4 TLIDPDKTNPSEADEIAKAAAESGTDA-ILIGGSQGVTYEKTDTLIEALRRYGLPIILFP--SNPTNVSRDADALFFPSV 80 (223)
T ss_pred eeECCCCCCccccHHHHHHHHhcCCCE-EEEcCCCcccHHHHHHHHHHHhccCCCEEEeC--CCccccCcCCCEEEEEEe
Confidence 34666662 333345555555554444 444443 23334444 44455555555432 222355677999999986
Q ss_pred C
Q 012256 311 T 311 (467)
Q Consensus 311 ~ 311 (467)
.
T Consensus 81 l 81 (223)
T TIGR01768 81 L 81 (223)
T ss_pred e
Confidence 4
No 322
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.52 E-value=1.1e+02 Score=29.92 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=30.1
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
+|+.|.++.+...|.-.- -+.-+..+..|.+.|..+|++++|||
T Consensus 55 rg~dV~ivqs~~~p~nd~-l~eLll~~~alr~~~a~~i~~ViPYl 98 (332)
T PRK00553 55 RNKDVVIFQSTCSPVNDS-LMELLIAIDALKRGSAKSITAILPYY 98 (332)
T ss_pred CCCEEEEEcCCCCCCchH-HHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 467788887766553221 22333344999999988999999986
No 323
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=24.43 E-value=4.2e+02 Score=26.15 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=42.7
Q ss_pred cCCe-EEEEEecCCCHHHHHHHHHh-cCCeeEEe-cCCCCHH---HHHHhcCeEEecCCCCCCcHHHHH-HHHcCCeEEE
Q 012256 258 LAGL-EVDLYGNGEDFNQIQEAAEK-LKIVVRVY-PGRDHAD---LIFHDYKVFLNPSTTDVVCTTTAE-ALAMGKIVVC 330 (467)
Q Consensus 258 ~~~~-~l~i~G~g~~~~~l~~~~~~-~~~~v~~~-g~~~~~~---~~~~~adv~v~ps~~e~~~~~~lE-Ama~G~PVV~ 330 (467)
..+. +++++|.. .+.+++.+++ .+.++... -.+.+.+ ++++.+|++|+.+-.. ++..+++ |+.+|++.|-
T Consensus 20 ~~~~~~v~va~r~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 20 RGPFEEVTVADRN--PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp TTCE-EEEEEESS--HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE
T ss_pred CCCCCcEEEEECC--HHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec
Confidence 3445 77887754 3445555443 33355444 4455444 8899999999886444 5555555 5788999998
Q ss_pred eCC
Q 012256 331 ANH 333 (467)
Q Consensus 331 t~~ 333 (467)
+..
T Consensus 97 ~~~ 99 (386)
T PF03435_consen 97 TSY 99 (386)
T ss_dssp SS-
T ss_pred cch
Confidence 643
No 324
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=24.31 E-value=2.6e+02 Score=22.80 Aligned_cols=29 Identities=31% Similarity=0.356 Sum_probs=18.6
Q ss_pred EEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 8 IAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 8 I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
+.|+.+.. |+.+-.+.+.+..|+.|.+.|
T Consensus 3 ~~Ivvt~p-pYg~q~a~~A~~fA~all~~g 31 (126)
T COG1553 3 YTIVVTGP-PYGTESAFSALRFAEALLEQG 31 (126)
T ss_pred EEEEEecC-CCccHHHHHHHHHHHHHHHcC
Confidence 77776664 665544555566677777776
No 325
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=24.10 E-value=3.3e+02 Score=23.03 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhhc-CCeEEEEEecCCC-HHHHHHHHHhcCC-eeEEe--cCCC--CHH-------HHHHh--cCeEE
Q 012256 243 GYKELLELLDDHQKEL-AGLEVDLYGNGED-FNQIQEAAEKLKI-VVRVY--PGRD--HAD-------LIFHD--YKVFL 306 (467)
Q Consensus 243 g~~~li~a~~~l~~~~-~~~~l~i~G~g~~-~~~l~~~~~~~~~-~v~~~--g~~~--~~~-------~~~~~--adv~v 306 (467)
--..++.+..++.+.. ..+..+++|+.+. .+.+++....+|. ++... .... ..+ +++.. .|+++
T Consensus 16 ~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl 95 (164)
T PF01012_consen 16 VSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVL 95 (164)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3456777777776532 3588889996455 4456666665675 44443 2222 222 44444 69999
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+|+...+-.+.-.=|...|.|+++--.
T Consensus 96 ~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 96 FGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp EESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred EcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 998877666766667777888776443
No 326
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=24.07 E-value=5.4e+02 Score=23.30 Aligned_cols=61 Identities=16% Similarity=0.023 Sum_probs=32.7
Q ss_pred hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcC
Q 012256 301 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
.+|.+++.+.... +..+-++...|.|+|.-+....+. ....+..++.+....+...++...
T Consensus 55 ~vdgii~~~~~~~-~~~~~~~~~~~ipvV~~~~~~~~~---~~~~v~~d~~~~~~~~~~~l~~~g 115 (268)
T cd06270 55 RCDALILHSKALS-DDELIELAAQVPPLVLINRHIPGL---ADRCIWLDNEQGGYLATEHLIELG 115 (268)
T ss_pred CCCEEEEecCCCC-HHHHHHHhhCCCCEEEEeccCCCC---CCCeEEECcHHHHHHHHHHHHHCC
Confidence 4465555332211 112566667899999987643211 112234446666666666666654
No 327
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=23.94 E-value=1.9e+02 Score=27.62 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=17.3
Q ss_pred ceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
++|+++ |+-.+.+..++.|.+.|
T Consensus 3 ~~~~v~---------ggd~r~~~~~~~l~~~G 25 (296)
T PRK08306 3 KHIAVI---------GGDARQLELIRKLVELG 25 (296)
T ss_pred cEEEEE---------cCcHHHHHHHHHHHHCC
Confidence 457776 33447888889999999
No 328
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.88 E-value=7e+02 Score=24.53 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=58.5
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEec-----------CCC---HHHHHHHHHhcCCeeEEecC-CCCH
Q 012256 231 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-----------GED---FNQIQEAAEKLKIVVRVYPG-RDHA 295 (467)
Q Consensus 231 ~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~-----------g~~---~~~l~~~~~~~~~~v~~~g~-~~~~ 295 (467)
.++.+| ..--.+-+.+++.+..+++. ..+++-.|. |.. .+.+.+..++.|+.+.-... ..+.
T Consensus 102 l~vIAG-PCsIEs~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v 178 (352)
T PRK13396 102 VVVVAG-PCSVENEEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMDAADL 178 (352)
T ss_pred EEEEEe-CCcccCHHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCCHHHH
Confidence 455555 45566777888888888765 455666551 111 23355556666765332211 1222
Q ss_pred HHHHHhcCeEEecCCC-CCCcHHHHHHH-HcCCeEEEeCC
Q 012256 296 DLIFHDYKVFLNPSTT-DVVCTTTAEAL-AMGKIVVCANH 333 (467)
Q Consensus 296 ~~~~~~adv~v~ps~~-e~~~~~~lEAm-a~G~PVV~t~~ 333 (467)
+.+...+|++=.+|.. ..+ .+++++ ..|+||+.++.
T Consensus 179 ~~~~~~~d~lqIga~~~~n~--~LL~~va~t~kPVllk~G 216 (352)
T PRK13396 179 EKIAEVADVIQVGARNMQNF--SLLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHhhCCeEEECcccccCH--HHHHHHHccCCeEEEeCC
Confidence 2444558999999864 344 445555 67999999887
No 329
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=23.85 E-value=2.2e+02 Score=22.86 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCeEEEEEecCCC----HHHHHHHHHhcCCeeEEe
Q 012256 248 LELLDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 289 (467)
Q Consensus 248 i~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~~~v~~~ 289 (467)
.+.+..+....|+..++++|.|.. ..++.+..++.|+.+++.
T Consensus 42 ~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm 87 (114)
T cd05125 42 EESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVV 87 (114)
T ss_pred HHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEE
Confidence 445555554457778999998875 345666666777777665
No 330
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=23.83 E-value=2.3e+02 Score=27.72 Aligned_cols=54 Identities=22% Similarity=0.125 Sum_probs=38.7
Q ss_pred EEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhc---CeEEecCCCCCCcHHH
Q 012256 262 EVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDY---KVFLNPSTTDVVCTTT 318 (467)
Q Consensus 262 ~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~a---dv~v~ps~~e~~~~~~ 318 (467)
.|+|+|+. ..++.++-+.+..+-+.|+++-.++..+.| ++=|+.|.+++|-.+.
T Consensus 116 ~LlIVGnR---~~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlstsYDTFTVAt 172 (432)
T COG4109 116 GLLIVGNR---EDIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTFTVAT 172 (432)
T ss_pred ceEEEecH---HHHHHHHHhcCCeEEEeCCCCccHHHHHhhcccCCceEEecccceeHHH
Confidence 58999974 556666667776788889987777555555 6667777788886553
No 331
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=23.78 E-value=1.1e+02 Score=28.33 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=20.3
Q ss_pred HHHHHHHHhhc--CCeEEEEEecCCCHHH
Q 012256 248 LELLDDHQKEL--AGLEVDLYGNGEDFNQ 274 (467)
Q Consensus 248 i~a~~~l~~~~--~~~~l~i~G~g~~~~~ 274 (467)
..+|+++++++ |+++++++|+|++.++
T Consensus 216 ~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~ 244 (274)
T TIGR01658 216 LQCFKWIKERFGHPKVRFCAIGDGWEECT 244 (274)
T ss_pred HHHHHHHHHHhCCCCceEEEeCCChhHHH
Confidence 45677776554 5899999999988653
No 332
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=23.74 E-value=1.5e+02 Score=27.61 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=12.3
Q ss_pred hhhccCCCCCCCEEEe
Q 012256 108 DISEVIPDEVADIAVL 123 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~ 123 (467)
.+..++++.+||+|+.
T Consensus 74 al~~l~~~~~pDLVvS 89 (252)
T COG0496 74 GLNELLKEPRPDLVVS 89 (252)
T ss_pred HHHHhccCCCCCEEEe
Confidence 4566676778999998
No 333
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=23.53 E-value=3.8e+02 Score=25.36 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=21.8
Q ss_pred HHHH--hcCeEEecCC-CCCCcHHHHHHHH--cCCeEEEeC
Q 012256 297 LIFH--DYKVFLNPST-TDVVCTTTAEALA--MGKIVVCAN 332 (467)
Q Consensus 297 ~~~~--~adv~v~ps~-~e~~~~~~lEAma--~G~PVV~t~ 332 (467)
+.++ ..|+++=.|. .-.|.--++++|+ |..|||-.-
T Consensus 99 e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 99 EVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 6666 6678777764 3346666677766 344555443
No 334
>CHL00067 rps2 ribosomal protein S2
Probab=23.20 E-value=5.8e+02 Score=23.32 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=21.2
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
|+.|.....+. -.++.||.-+|.|||+--.
T Consensus 163 ~~iiv~d~~~~-~~ai~Ea~~l~IPvIaivD 192 (230)
T CHL00067 163 DIVIIIDQQEE-YTALRECRKLGIPTISILD 192 (230)
T ss_pred CEEEEeCCccc-HHHHHHHHHcCCCEEEEEe
Confidence 55554433322 3789999999999998665
No 335
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=22.99 E-value=1e+02 Score=28.17 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecC
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLS 49 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~ 49 (467)
++++|++| |++......+..|.+.| -+||+++|.++
T Consensus 24 ~~~~VLVV---------GGG~VA~RK~~~Ll~~g-A~VtVVap~i~ 59 (223)
T PRK05562 24 NKIKVLII---------GGGKAAFIKGKTFLKKG-CYVYILSKKFS 59 (223)
T ss_pred CCCEEEEE---------CCCHHHHHHHHHHHhCC-CEEEEEcCCCC
Confidence 35567776 33435566678899999 55666666543
No 336
>PLN02929 NADH kinase
Probab=22.87 E-value=3.4e+02 Score=26.03 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc--cc-------c-ccCC
Q 012256 274 QIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN--DF-------F-KQFP 343 (467)
Q Consensus 274 ~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~--e~-------v-~~~~ 343 (467)
.+++..++.+..+...-+.+. ......+|++|.-- -+|.=+...-.+-.++||+.-+.|.. +. + ..+.
T Consensus 38 ~~~~~L~~~gi~~~~v~r~~~-~~~~~~~Dlvi~lG-GDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~ 115 (301)
T PLN02929 38 FCKDILQQKSVDWECVLRNEL-SQPIRDVDLVVAVG-GDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRS 115 (301)
T ss_pred HHHHHHHHcCCEEEEeecccc-ccccCCCCEEEEEC-CcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccC
Confidence 344444455544433222111 22345667776432 22222222222445789999998641 11 1 1235
Q ss_pred CEEeeC-CHHHHHHHHHHHHhcC
Q 012256 344 NCRTYD-DRNGFVEATLKALAEE 365 (467)
Q Consensus 344 ~g~~~~-~~~~l~~~i~~~l~~~ 365 (467)
.|++.+ +++++.+++.++++..
T Consensus 116 lGfL~~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 116 TGHLCAATAEDFEQVLDDVLFGR 138 (301)
T ss_pred ccccccCCHHHHHHHHHHHHcCC
Confidence 789998 9999999999999874
No 337
>PRK08163 salicylate hydroxylase; Provisional
Probab=22.64 E-value=1.1e+02 Score=30.28 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=19.4
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
|.|. ++|+|| |+++.-+..|..|++.|
T Consensus 1 ~~~~-~~V~Iv---------GaGiaGl~~A~~L~~~g 27 (396)
T PRK08163 1 MTKV-TPVLIV---------GGGIGGLAAALALARQG 27 (396)
T ss_pred CCCC-CeEEEE---------CCcHHHHHHHHHHHhCC
Confidence 6664 569888 33555666678899999
No 338
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=22.48 E-value=4.6e+02 Score=21.85 Aligned_cols=70 Identities=19% Similarity=0.107 Sum_probs=45.9
Q ss_pred cCCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCC-CHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEE
Q 012256 258 LAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRD-HADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 329 (467)
Q Consensus 258 ~~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~-~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV 329 (467)
..+-+++|+|.+.. -+.+..+..+.+..+....... +.++..+.||+++...-.- ++.--|-+--|.-||
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~Vi 97 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATVI 97 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEEE
Confidence 34678999997766 3446666666677777775433 4458899999999764433 334455566676666
No 339
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=22.21 E-value=3e+02 Score=22.95 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=51.0
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHH----Hhc-CeEEecCCCCCCcHHHHHHH-HcCCeEEE---eCCCCcccccc--
Q 012256 275 IQEAAEKLKIVVRVYPGRDHAD--LIF----HDY-KVFLNPSTTDVVCTTTAEAL-AMGKIVVC---ANHPSNDFFKQ-- 341 (467)
Q Consensus 275 l~~~~~~~~~~v~~~g~~~~~~--~~~----~~a-dv~v~ps~~e~~~~~~lEAm-a~G~PVV~---t~~g~~e~v~~-- 341 (467)
+++.+++++..+.|.-.=...+ +.+ .++ ++.++|.-+--.+.++..|+ +..+|+|= |+.-.+|.+.+
T Consensus 34 ~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaRE~FRhhS 113 (146)
T COG0757 34 LEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAREEFRHHS 113 (146)
T ss_pred HHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhcccccccc
Confidence 4555556666666652221222 333 332 39999988888899999996 45779884 44434554443
Q ss_pred ----CCCEEeeC-CHHHHHHHHHHHH
Q 012256 342 ----FPNCRTYD-DRNGFVEATLKAL 362 (467)
Q Consensus 342 ----~~~g~~~~-~~~~l~~~i~~~l 362 (467)
-..|.++- -+....=+++.+.
T Consensus 114 ~~s~~a~GvI~GlG~~GY~lAl~~l~ 139 (146)
T COG0757 114 YTSPVAKGVICGLGAQGYLLALRALV 139 (146)
T ss_pred cccchhceeEecCcHHHHHHHHHHHH
Confidence 33455554 5555555555544
No 340
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=22.04 E-value=6.4e+02 Score=26.50 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCC
Q 012256 247 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGK 326 (467)
Q Consensus 247 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~ 326 (467)
+++++...++. .-++-|+|-......++....-+++++..+...+..+ .-..+.++-+.|+
T Consensus 96 il~al~~a~~~--~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e-----------------~~~~v~~lk~~G~ 156 (538)
T PRK15424 96 VMQALARARKL--TSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEED-----------------ARGQINELKANGI 156 (538)
T ss_pred HHHHHHHHHhc--CCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHH-----------------HHHHHHHHHHCCC
Confidence 45566554432 2346666655444555555555555554443333333 2234566667777
Q ss_pred eEEEeCC-CCccccccCCCEEeeCCHHHHHHHHHHHHh
Q 012256 327 IVVCANH-PSNDFFKQFPNCRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 327 PVV~t~~-g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~ 363 (467)
-+|..+. ....-.+-+.+|.+..+.+++.+++.++++
T Consensus 157 ~~vvG~~~~~~~A~~~g~~g~~~~s~e~i~~a~~~A~~ 194 (538)
T PRK15424 157 EAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFEDALD 194 (538)
T ss_pred CEEEcCchHHHHHHHhCCceEEecCHHHHHHHHHHHHH
Confidence 7776665 323344445566554466788888877765
No 341
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.86 E-value=5.8e+02 Score=22.81 Aligned_cols=79 Identities=20% Similarity=0.142 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH-HHHHhcCeEEecCCCCCCcHHHHHHHHcC
Q 012256 247 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMG 325 (467)
Q Consensus 247 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~-~~~~~adv~v~ps~~e~~~~~~lEAma~G 325 (467)
.+++++++++++|++ ++=+|.--+.+++++.+ +.|-+..+.+.++.+- ++-+.+++.++|--. .|.-+++|+.+|
T Consensus 42 a~~~I~~l~~~~~~~-~vGAGTVl~~e~a~~ai-~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~--TptEi~~A~~~G 117 (201)
T PRK06015 42 ALDAIRAVAAEVEEA-IVGAGTILNAKQFEDAA-KAGSRFIVSPGTTQELLAAANDSDVPLLPGAA--TPSEVMALREEG 117 (201)
T ss_pred HHHHHHHHHHHCCCC-EEeeEeCcCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHHcCCCEeCCCC--CHHHHHHHHHCC
Confidence 345555565566652 22233334455555433 3443433334443333 666666777777321 244577778888
Q ss_pred CeEE
Q 012256 326 KIVV 329 (467)
Q Consensus 326 ~PVV 329 (467)
..+|
T Consensus 118 a~~v 121 (201)
T PRK06015 118 YTVL 121 (201)
T ss_pred CCEE
Confidence 7665
No 342
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=21.70 E-value=6.1e+02 Score=24.86 Aligned_cols=73 Identities=7% Similarity=-0.068 Sum_probs=45.8
Q ss_pred eEEecCCCCHH----HHH--------HhcCeEEecCCCCC-CcHHHHHH-----HHcCCeEEEeCC--CCc-cccccCCC
Q 012256 286 VRVYPGRDHAD----LIF--------HDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PSN-DFFKQFPN 344 (467)
Q Consensus 286 v~~~g~~~~~~----~~~--------~~adv~v~ps~~e~-~~~~~lEA-----ma~G~PVV~t~~--g~~-e~v~~~~~ 344 (467)
+.+.|.++.+. ... ..+|++|--....| .|++++.. +..|+|+|-|.. |.. ++...+.
T Consensus 245 ~~v~GP~paDt~F~~~~~~~~~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkg~- 323 (345)
T PRK02746 245 IQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYLALYHDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFDIAGKGI- 323 (345)
T ss_pred ceeeCCCCchhhccccccccccccccCCCCEEEECcccCCChhheeeccCcceEEecCCCeeEeCCCCcchhhhhcCCC-
Confidence 67779987777 222 56788886533222 23333222 456999998887 443 6654432
Q ss_pred EEeeCCHHHHHHHHHHHHh
Q 012256 345 CRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 345 g~~~~~~~~l~~~i~~~l~ 363 (467)
-|+.+|.+||..+.+
T Consensus 324 ----A~~~S~~~Ai~lA~~ 338 (345)
T PRK02746 324 ----ARPQSMKAAIKLAWE 338 (345)
T ss_pred ----CCHHHHHHHHHHHHH
Confidence 289999999987654
No 343
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=21.70 E-value=1.3e+02 Score=29.30 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=30.4
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
.+|+.|.|+.+...|+ - -+.-+..+..|.+.|..+|++++||+
T Consensus 64 vrg~~V~ivqs~~~pd--~-lmELLl~~dAlr~~ga~~i~~ViPY~ 106 (326)
T PLN02297 64 IRGQHVAFLASFSSPA--V-IFEQLSVIYALPKLFVASFTLVLPFF 106 (326)
T ss_pred cCCCeEEEECCCCCCh--H-HHHHHHHHHHHHHcCCCEEEEEeeCC
Confidence 3467788888876562 1 22333334999999988999999986
No 344
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=21.59 E-value=1.2e+02 Score=29.10 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
+|+.+.++.+.+.| ...-+.-+..+..|.+.|..+||+++||+
T Consensus 48 ~g~~V~ivqs~~~~--n~~l~elll~~~alr~~~a~~i~~ViPY~ 90 (301)
T PRK07199 48 AGRTVVLVCSLDRP--DEKLLPLLFAAEAARELGARRVGLVAPYL 90 (301)
T ss_pred CCCEEEEECCCCCC--cHHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46678888877655 22122333334999999988899999985
No 345
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.58 E-value=2.1e+02 Score=21.25 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=32.3
Q ss_pred EEEEecCCC-----HHHHHHHHHhcCCeeEEe-cCCCCHHHHHHhcCeEEecCCC
Q 012256 263 VDLYGNGED-----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTT 311 (467)
Q Consensus 263 l~i~G~g~~-----~~~l~~~~~~~~~~v~~~-g~~~~~~~~~~~adv~v~ps~~ 311 (467)
++++|.|-. ...+++.+++.++++... +.....+.+...+|+++.....
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i 57 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDADLILLTPQI 57 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESS
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCcEEEEcCcc
Confidence 567777755 356778888888766655 3333444667779999987554
No 346
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=21.52 E-value=5.1e+02 Score=21.98 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=44.2
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC---H-HH----HHHHHHhcCCeeEEecCCCCHHHHHH
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---F-NQ----IQEAAEKLKIVVRVYPGRDHADLIFH 300 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~-~~----l~~~~~~~~~~v~~~g~~~~~~~~~~ 300 (467)
...+.|+|. ....=...++.++.++ +..+.+++.... . .. .++.+.+.+..+.+. ...++.+.
T Consensus 2 gl~i~~vGD-~~~rv~~Sl~~~~~~~-----g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~---~~~~e~l~ 72 (158)
T PF00185_consen 2 GLKIAYVGD-GHNRVAHSLIELLAKF-----GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT---DDIEEALK 72 (158)
T ss_dssp TEEEEEESS-TTSHHHHHHHHHHHHT-----TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE---SSHHHHHT
T ss_pred CCEEEEECC-CCChHHHHHHHHHHHc-----CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE---eCHHHhcC
Confidence 457899994 2233345555555553 456999996431 1 12 234444455566666 55558999
Q ss_pred hcCeEEecCCC
Q 012256 301 DYKVFLNPSTT 311 (467)
Q Consensus 301 ~adv~v~ps~~ 311 (467)
.+||+...+..
T Consensus 73 ~aDvvy~~~~~ 83 (158)
T PF00185_consen 73 GADVVYTDRWQ 83 (158)
T ss_dssp T-SEEEEESSS
T ss_pred CCCEEEEcCcc
Confidence 99998877655
No 347
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=21.48 E-value=2.9e+02 Score=26.59 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=35.2
Q ss_pred HHHHHHcCCeEEEeCCCCccccccCCCEEeeC---CHHHHHHHHHHHHhcCCC
Q 012256 318 TAEALAMGKIVVCANHPSNDFFKQFPNCRTYD---DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 318 ~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~---~~~~l~~~i~~~l~~~~~ 367 (467)
+-..+..|.+||++..|+..++.++..-+.++ |.+.++..+...+..+..
T Consensus 175 I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~L 227 (310)
T TIGR00746 175 IKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADIL 227 (310)
T ss_pred HHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEE
Confidence 44478999999999888777765432212222 889999999888876543
No 348
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=21.43 E-value=3e+02 Score=27.37 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=54.3
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCCCCCCcHH
Q 012256 240 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTT 317 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~~e~~~~~ 317 (467)
-.+|++.|.+...++ .| +.+.+++......+++...+.+.+.+++.+.+.-.++.. .+|++|+....-.-=..
T Consensus 35 a~~n~~~L~~q~~~f---~p--~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL~p 109 (389)
T TIGR00243 35 AGKNVALMVEQILEF---RP--KFVAIDDEASLKDLKTMLQQQGSRTEVLVGEEGICEMAALEDVDQVMNAIVGAAGLLP 109 (389)
T ss_pred cCCCHHHHHHHHHHc---CC--CEEEEcCHHHHHHHHHHhhcCCCCcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhHHH
Confidence 478999999988876 34 455566654445555543211323556644333334444 35888887432222246
Q ss_pred HHHHHHcCCeEEEeCCC
Q 012256 318 TAEALAMGKIVVCANHP 334 (467)
Q Consensus 318 ~lEAma~G~PVV~t~~g 334 (467)
+++|+.+|+.|--.+-.
T Consensus 110 t~~Ai~~gk~iaLANKE 126 (389)
T TIGR00243 110 TLAAIRAGKTIALANKE 126 (389)
T ss_pred HHHHHHCCCcEEEechh
Confidence 89999999988777753
No 349
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=21.32 E-value=4.1e+02 Score=22.72 Aligned_cols=82 Identities=15% Similarity=0.072 Sum_probs=55.0
Q ss_pred CceEEEEec-cc-cccC-HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH-HHHHhcCe
Q 012256 229 AKGAYYIGK-MV-WSKG-YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKV 304 (467)
Q Consensus 229 ~~~il~vGr-l~-~~Kg-~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~-~~~~~adv 304 (467)
+.+.+|.+- .. +-+. ...|.+.+.++.+..+++.++++-...+.+++.+...+....-..++.-+... ++.....+
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v 113 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEV 113 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhccc
Confidence 444444443 33 4444 45667888888887788999999988887888887776554544445544444 77888877
Q ss_pred EEecCC
Q 012256 305 FLNPST 310 (467)
Q Consensus 305 ~v~ps~ 310 (467)
--.|+.
T Consensus 114 ~~iP~l 119 (157)
T KOG2501|consen 114 KGIPAL 119 (157)
T ss_pred CcCcee
Confidence 777764
No 350
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=21.27 E-value=5.3e+02 Score=24.28 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCeeEEe--cCCCCHH----HHHHhcCeEEecCCC---CCCcHHHHHHHHcCCeEEEeCCCCccccccCC
Q 012256 273 NQIQEAAEKLKIVVRVY--PGRDHAD----LIFHDYKVFLNPSTT---DVVCTTTAEALAMGKIVVCANHPSNDFFKQFP 343 (467)
Q Consensus 273 ~~l~~~~~~~~~~v~~~--g~~~~~~----~~~~~adv~v~ps~~---e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~ 343 (467)
+.+++.++.+++++... ....+.. .+-...|+++.+... ..+...+..+..+++||+++.. ..+..|.
T Consensus 150 ~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~~---~~v~~Ga 226 (294)
T PF04392_consen 150 EQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSSD---FYVKAGA 226 (294)
T ss_dssp HHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESSH---HHHCTT-
T ss_pred HHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECCH---HHhcCCc
Confidence 34555566666654433 2222222 333455877776432 2333345566778999999763 3455553
Q ss_pred CE
Q 012256 344 NC 345 (467)
Q Consensus 344 ~g 345 (467)
-+
T Consensus 227 l~ 228 (294)
T PF04392_consen 227 LG 228 (294)
T ss_dssp SE
T ss_pred EE
Confidence 33
No 351
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.00 E-value=4.9e+02 Score=25.75 Aligned_cols=92 Identities=20% Similarity=0.155 Sum_probs=58.9
Q ss_pred cccCHHHHHHHHHHHHhh------cCCeEEEEEecCC----CHHHHHHHHHhcCCeeEEecC--CCCHH-HHHHhcCeEE
Q 012256 240 WSKGYKELLELLDDHQKE------LAGLEVDLYGNGE----DFNQIQEAAEKLKIVVRVYPG--RDHAD-LIFHDYKVFL 306 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~------~~~~~l~i~G~g~----~~~~l~~~~~~~~~~v~~~g~--~~~~~-~~~~~adv~v 306 (467)
...|.+..++++...... ...-.+.|+|..+ +..+++++.++.|+++..... .+-.+ .-+..|.+-+
T Consensus 126 ~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nl 205 (399)
T cd00316 126 QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNL 205 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEE
Confidence 456888888777654321 1234588888533 568899999999998776633 34344 4455666555
Q ss_pred ecCCCCCCcHHHHHHHH--cCCeEEEeCC
Q 012256 307 NPSTTDVVCTTTAEALA--MGKIVVCANH 333 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma--~G~PVV~t~~ 333 (467)
..+. -++..+.|.|. +|.|.+....
T Consensus 206 v~~~--~~g~~~a~~l~~~~g~p~~~~~p 232 (399)
T cd00316 206 VLCR--ESGLYLARYLEEKYGIPYILINP 232 (399)
T ss_pred EecH--hHHHHHHHHHHHHhCCCeEEeCC
Confidence 5443 24666777774 8999888763
No 352
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=20.82 E-value=4.3e+02 Score=25.76 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=46.2
Q ss_pred eEEecCCCCHH----HHHHhcCeEEecCCCCC-CcHHHHHH-----HHcCCeEEEeCC--CCc-cccccCCCEEeeCCHH
Q 012256 286 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PSN-DFFKQFPNCRTYDDRN 352 (467)
Q Consensus 286 v~~~g~~~~~~----~~~~~adv~v~ps~~e~-~~~~~lEA-----ma~G~PVV~t~~--g~~-e~v~~~~~g~~~~~~~ 352 (467)
+.+.|.++.+. .....+|++|--....| .|++++.. +..|+|+|-|.. |.. ++...+. -|+.
T Consensus 240 ~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg~-----A~~~ 314 (332)
T PRK00232 240 INLVGPLPADTLFQPAYLGDADAVLAMYHDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALDLAGKGI-----ADVG 314 (332)
T ss_pred CCcCCCCCchhhccccccCCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCCC-----CCHH
Confidence 44568887776 44556799886533333 23333332 457999998877 443 6654432 2899
Q ss_pred HHHHHHHHHHh
Q 012256 353 GFVEATLKALA 363 (467)
Q Consensus 353 ~l~~~i~~~l~ 363 (467)
+|.++|..+..
T Consensus 315 S~~~Ai~lA~~ 325 (332)
T PRK00232 315 SFITALNLAIR 325 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 353
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=20.74 E-value=3.6e+02 Score=26.81 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=52.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCCeeEEecC----------CCCHHHHHHhcCeEE--ecCCCC----C---CcHHHH
Q 012256 259 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG----------RDHADLIFHDYKVFL--NPSTTD----V---VCTTTA 319 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~----------~~~~~~~~~~adv~v--~ps~~e----~---~~~~~l 319 (467)
.+-++-|+|-|.--..+.+.++.+|.++..+.. ...-+++++.||+++ .|...+ + ++-..+
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l 194 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI 194 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHH
Confidence 355788888877767777777777777665521 112238899999988 554333 3 345688
Q ss_pred HHHHcCCeEEEeCCCC
Q 012256 320 EALAMGKIVVCANHPS 335 (467)
Q Consensus 320 EAma~G~PVV~t~~g~ 335 (467)
++|--|.-+|-+.-|+
T Consensus 195 ~~mk~gailIN~aRG~ 210 (378)
T PRK15438 195 RSLKPGAILINACRGA 210 (378)
T ss_pred hcCCCCcEEEECCCch
Confidence 8888888888777765
No 354
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=20.73 E-value=3.7e+02 Score=25.79 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=45.9
Q ss_pred EEEEec-CCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhc--CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 263 VDLYGN-GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 263 l~i~G~-g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~a--dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+.+++- ..+.+..++.+++++.. -.+.+.+++++.- |+++..+....-.-.++.|+..|++|+|=+.
T Consensus 30 ~~~vav~d~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKP 99 (342)
T COG0673 30 LELVAVVDRDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKP 99 (342)
T ss_pred eEEEEEecCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCC
Confidence 344442 33446677778877754 2334445777764 8888887766555567999999999999886
No 355
>PLN02173 UDP-glucosyl transferase family protein
Probab=20.50 E-value=1.5e+02 Score=30.34 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=27.3
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeee
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPW 47 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~ 47 (467)
.||+++ |+..-+.++++..+ +.|+.+| ..||++++.
T Consensus 6 ~hvv~~-----P~paqGHi~P~l~lAk~La~~G-~~vT~v~t~ 42 (449)
T PLN02173 6 GHVLAV-----PFPSQGHITPIRQFCKRLHSKG-FKTTHTLTT 42 (449)
T ss_pred cEEEEe-----cCcccccHHHHHHHHHHHHcCC-CEEEEEECC
Confidence 578777 43444488998876 9999999 788888775
No 356
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.48 E-value=5.9e+02 Score=22.37 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCC-----------CCcHHHHHHHHcCCeEEEeCCCC
Q 012256 273 NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD-----------VVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 273 ~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e-----------~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
..+.+..+.++..+.+... . +-+..+|.+|+|.-.+ ++.-.+.++...|+||++.=.|.
T Consensus 13 ~~~~~~l~~~g~~v~~~~~---~-~~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSD---P-EEIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred HHHHHHHHHCCCcEEEEcC---h-HHhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 4455555666666655521 2 2245677777775321 34456788888999999887775
No 357
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=20.45 E-value=7.3e+02 Score=24.71 Aligned_cols=100 Identities=14% Similarity=-0.001 Sum_probs=56.1
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH---HHHHhc--C
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDY--K 303 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~a--d 303 (467)
+.+.+..+.+.+ +..+...+..+++++|++++++.-..+.-.++.+.....+..+..+ .++... .+++.- |
T Consensus 51 ~~iW~Ha~s~Ge---~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~-P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 51 PLIWFHAVSVGE---TRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYL-PYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CeEEEEeCCHHH---HHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEe-cCCcHHHHHHHHHhhCCC
Confidence 446667777765 4444555555566678887766543333222222211112233322 333333 555543 8
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+++.- .+|-++..+..+-..|+|+|..+.
T Consensus 127 ~v~~~-~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 127 LVIIM-ETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred EEEEE-ecchhHHHHHHHHHCCCCEEEEec
Confidence 88654 346778888888889999998754
No 358
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=20.41 E-value=1e+02 Score=25.30 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=20.5
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
|| |+|+-+.. |+.+-.+.+.+..|..+...|
T Consensus 1 m~---~~iv~~~~-Py~~~~~~~al~~A~aa~~~g 31 (128)
T PRK00207 1 MR---YAIAVTGP-AYGTQQASSAYQFAQALLAEG 31 (128)
T ss_pred CE---EEEEEcCC-CCCCHHHHHHHHHHHHHHhCC
Confidence 56 98888776 664443444455567888889
No 359
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=20.31 E-value=6.6e+02 Score=22.85 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCC-ccceEeeecCCCCCchHHHHHHhCCCCC
Q 012256 422 ASAYVHFLASGFE-TSRRAFGAIPGSLHPDEELCKELGLVTP 462 (467)
Q Consensus 422 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 462 (467)
+...+..++...+ ....+++.....-....+.+++.|+-.|
T Consensus 171 ~~~~~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip 212 (273)
T cd06309 171 GKEVMEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPG 212 (273)
T ss_pred HHHHHHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCC
Confidence 3334444454332 3455566544443457778899999655
No 360
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.14 E-value=3.2e+02 Score=23.63 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=39.2
Q ss_pred eEEEEEecCCCHHHHHHHHHhcCCeeEEecCC--------------CCHHHHHHhcCeEEec--CCCCC---CcHHHHHH
Q 012256 261 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR--------------DHADLIFHDYKVFLNP--STTDV---VCTTTAEA 321 (467)
Q Consensus 261 ~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~--------------~~~~~~~~~adv~v~p--s~~e~---~~~~~lEA 321 (467)
.++-|+|-|.--..+-+.++.+|.+|..+... ..-+++++.||++++. ...++ ++-..+++
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~ 116 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAK 116 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeec
Confidence 44555555544444555555555544444221 2223888999998753 33333 45567777
Q ss_pred HHcCCeEEEeCCC
Q 012256 322 LAMGKIVVCANHP 334 (467)
Q Consensus 322 ma~G~PVV~t~~g 334 (467)
|--|.-+|-+.-|
T Consensus 117 mk~ga~lvN~aRG 129 (178)
T PF02826_consen 117 MKPGAVLVNVARG 129 (178)
T ss_dssp STTTEEEEESSSG
T ss_pred cccceEEEeccch
Confidence 7777666655544
No 361
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=20.14 E-value=1.8e+02 Score=27.11 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=22.8
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecCC
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLSL 50 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~ 50 (467)
|||++.++.-+.. ..+..+ +.|.+.| +|++++|.-.+
T Consensus 6 M~ILltNDDGi~a------~Gi~aL~~~l~~~g--~V~VvAP~~~~ 43 (257)
T PRK13932 6 PHILVCNDDGIEG------EGIHVLAASMKKIG--RVTVVAPAEPH 43 (257)
T ss_pred CEEEEECCCCCCC------HHHHHHHHHHHhCC--CEEEEcCCCCC
Confidence 3498877664322 223333 7787777 69999997443
No 362
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=20.02 E-value=1.5e+02 Score=23.45 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=28.3
Q ss_pred HHHHhcCeEEecCCC----CCCcHHHHHHHHcCCeEEEeCCCCcc
Q 012256 297 LIFHDYKVFLNPSTT----DVVCTTTAEALAMGKIVVCANHPSND 337 (467)
Q Consensus 297 ~~~~~adv~v~ps~~----e~~~~~~lEAma~G~PVV~t~~g~~e 337 (467)
+.++.||++|..-.. .|.+.-+-=|.|.|+||++-......
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 778899998865222 23333445578999999998876544
Done!