Query 012256
Match_columns 467
No_of_seqs 284 out of 2896
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 7E-38 2.4E-42 311.8 26.1 349 1-394 1-380 (394)
2 3fro_A GLGA glycogen synthase; 100.0 1.7E-36 5.7E-41 306.1 26.8 273 115-394 120-431 (439)
3 2jjm_A Glycosyl transferase, g 100.0 1.1E-35 3.6E-40 296.7 24.4 279 107-394 89-386 (394)
4 2x6q_A Trehalose-synthase TRET 100.0 3.2E-35 1.1E-39 295.4 26.9 270 108-392 117-413 (416)
5 3c48_A Predicted glycosyltrans 100.0 1.2E-35 4E-40 300.4 23.5 275 117-395 122-427 (438)
6 2r60_A Glycosyl transferase, g 100.0 9.6E-36 3.3E-40 306.4 19.7 284 108-395 109-461 (499)
7 2gek_A Phosphatidylinositol ma 100.0 1.2E-35 4.2E-40 296.9 16.8 269 107-394 97-384 (406)
8 2iuy_A Avigt4, glycosyltransfe 100.0 2.1E-35 7.2E-40 288.8 18.0 243 108-394 75-336 (342)
9 2qzs_A Glycogen synthase; glyc 100.0 1.6E-34 5.3E-39 296.3 21.1 210 182-394 205-477 (485)
10 3s28_A Sucrose synthase 1; gly 100.0 4.6E-34 1.6E-38 303.8 24.2 273 115-392 405-768 (816)
11 1rzu_A Glycogen synthase 1; gl 100.0 1.8E-34 6.2E-39 295.8 20.2 278 109-394 121-476 (485)
12 3vue_A GBSS-I, granule-bound s 100.0 3.9E-34 1.3E-38 294.9 21.6 210 181-392 241-510 (536)
13 3oy2_A Glycosyltransferase B73 100.0 1.3E-33 4.5E-38 283.2 19.2 336 3-395 1-392 (413)
14 2iw1_A Lipopolysaccharide core 100.0 1E-33 3.5E-38 279.8 17.8 211 181-392 136-370 (374)
15 2x0d_A WSAF; GT4 family, trans 100.0 5.7E-32 1.9E-36 270.7 17.4 186 184-385 197-402 (413)
16 2hy7_A Glucuronosyltransferase 100.0 1.7E-29 5.8E-34 252.7 16.8 240 117-398 124-384 (406)
17 1f0k_A MURG, UDP-N-acetylgluco 99.9 2.3E-26 7.8E-31 226.5 16.3 250 107-393 86-357 (364)
18 2vsy_A XCC0866; transferase, g 99.9 9.5E-27 3.3E-31 243.1 13.9 259 107-394 272-560 (568)
19 3qhp_A Type 1 capsular polysac 99.9 2.2E-26 7.6E-31 200.6 12.0 155 229-385 2-166 (166)
20 3beo_A UDP-N-acetylglucosamine 99.9 9.4E-26 3.2E-30 222.9 16.8 266 107-391 85-374 (375)
21 2bfw_A GLGA glycogen synthase; 99.9 1.7E-25 5.8E-30 201.1 15.0 162 204-367 4-184 (200)
22 1uqt_A Alpha, alpha-trehalose- 99.9 1.7E-24 5.9E-29 219.4 21.0 185 204-393 226-454 (482)
23 1vgv_A UDP-N-acetylglucosamine 99.9 2E-25 6.9E-30 221.3 9.3 270 107-393 76-376 (384)
24 2f9f_A First mannosyl transfer 99.9 2.5E-23 8.6E-28 183.4 13.8 138 226-367 20-165 (177)
25 3nb0_A Glycogen [starch] synth 99.9 5.6E-22 1.9E-26 202.3 21.9 98 297-394 514-634 (725)
26 3t5t_A Putative glycosyltransf 99.9 1.5E-21 5.1E-26 195.8 22.6 266 116-393 148-473 (496)
27 1v4v_A UDP-N-acetylglucosamine 99.9 1.3E-22 4.3E-27 200.7 12.0 265 107-392 81-363 (376)
28 2xci_A KDO-transferase, 3-deox 99.8 1.7E-20 5.9E-25 185.1 17.3 233 107-374 101-357 (374)
29 3rhz_A GTF3, nucleotide sugar 99.8 2.1E-18 7E-23 166.9 11.9 239 116-385 73-328 (339)
30 3otg_A CALG1; calicheamicin, T 99.7 2.5E-17 8.5E-22 164.6 14.7 260 107-391 120-408 (412)
31 3s2u_A UDP-N-acetylglucosamine 99.7 2.2E-16 7.6E-21 155.1 16.3 238 107-374 82-336 (365)
32 3dzc_A UDP-N-acetylglucosamine 99.7 4E-17 1.4E-21 162.1 9.7 267 106-390 100-394 (396)
33 3ot5_A UDP-N-acetylglucosamine 99.7 1.5E-16 5.1E-21 158.3 11.8 268 106-391 103-393 (403)
34 2iyf_A OLED, oleandomycin glyc 99.6 1.8E-15 6E-20 152.1 15.2 154 229-393 233-401 (430)
35 3tsa_A SPNG, NDP-rhamnosyltran 99.6 4.2E-15 1.5E-19 147.3 11.6 153 229-391 219-388 (391)
36 4fzr_A SSFS6; structural genom 99.6 1.1E-14 3.8E-19 144.8 11.8 146 228-387 227-396 (398)
37 3ia7_A CALG4; glycosysltransfe 99.5 1.7E-13 5.9E-18 136.0 15.2 151 229-391 232-398 (402)
38 3oti_A CALG3; calicheamicin, T 99.5 3.5E-14 1.2E-18 141.2 9.3 148 229-391 233-397 (398)
39 3rsc_A CALG2; TDP, enediyne, s 99.4 3.1E-12 1.1E-16 127.6 15.3 151 229-391 248-413 (415)
40 2p6p_A Glycosyl transferase; X 99.4 4E-12 1.4E-16 125.5 14.1 122 229-365 211-348 (384)
41 4hwg_A UDP-N-acetylglucosamine 99.3 7.7E-12 2.6E-16 123.2 11.6 238 106-367 83-345 (385)
42 2yjn_A ERYCIII, glycosyltransf 99.2 5.9E-11 2E-15 119.5 12.0 149 229-391 268-435 (441)
43 2iya_A OLEI, oleandomycin glyc 99.2 1.8E-09 6.2E-14 107.9 20.5 126 229-366 256-391 (424)
44 4amg_A Snogd; transferase, pol 99.0 1.1E-10 3.6E-15 115.8 2.4 127 229-366 238-370 (400)
45 3h4t_A Glycosyltransferase GTF 99.0 3.4E-09 1.2E-13 105.3 12.6 147 229-391 222-382 (404)
46 2o6l_A UDP-glucuronosyltransfe 99.0 2E-09 6.8E-14 93.3 9.3 120 229-365 22-155 (170)
47 3q3e_A HMW1C-like glycosyltran 98.9 1.6E-09 5.4E-14 110.6 8.5 134 230-367 442-591 (631)
48 1l5w_A Maltodextrin phosphoryl 98.5 8E-07 2.7E-11 92.7 13.1 166 226-393 523-730 (796)
49 2gj4_A Glycogen phosphorylase, 98.5 8.3E-07 2.8E-11 92.9 12.4 165 226-392 547-753 (824)
50 2c4m_A Glycogen phosphorylase; 98.4 1.6E-06 5.5E-11 90.4 13.7 166 226-393 513-719 (796)
51 1iir_A Glycosyltransferase GTF 98.2 1.3E-06 4.5E-11 86.8 6.0 120 229-365 239-369 (415)
52 3hbm_A UDP-sugar hydrolase; PS 98.0 0.00013 4.4E-09 68.0 16.1 94 229-333 158-252 (282)
53 4gyw_A UDP-N-acetylglucosamine 97.9 7.6E-05 2.6E-09 79.2 13.9 160 232-392 524-704 (723)
54 1rrv_A Glycosyltransferase GTF 97.9 1.9E-05 6.5E-10 78.3 7.4 120 229-365 238-370 (416)
55 2c1x_A UDP-glucose flavonoid 3 97.0 0.0027 9.2E-08 63.6 9.9 127 229-365 272-413 (456)
56 3hbf_A Flavonoid 3-O-glucosylt 96.8 0.0054 1.9E-07 61.1 10.7 130 229-364 274-414 (454)
57 2acv_A Triterpene UDP-glucosyl 96.6 0.025 8.6E-07 56.6 13.9 136 229-373 277-433 (463)
58 2jzc_A UDP-N-acetylglucosamine 96.6 0.0037 1.3E-07 55.8 6.6 47 284-334 114-161 (224)
59 2pq6_A UDP-glucuronosyl/UDP-gl 96.2 0.03 1E-06 56.3 11.7 126 229-365 296-440 (482)
60 1psw_A ADP-heptose LPS heptosy 95.9 0.018 6.2E-07 55.0 8.3 97 230-333 182-288 (348)
61 1ygp_A Yeast glycogen phosphor 95.2 0.28 9.4E-06 51.6 14.1 130 227-356 598-768 (879)
62 3tov_A Glycosyl transferase fa 94.6 0.2 6.8E-06 47.9 10.8 99 230-335 187-290 (349)
63 2vch_A Hydroquinone glucosyltr 93.8 0.56 1.9E-05 46.9 12.5 77 286-365 341-430 (480)
64 2gt1_A Lipopolysaccharide hept 93.5 0.29 9.8E-06 46.1 9.4 127 230-364 180-322 (326)
65 3nva_A CTP synthase; rossman f 80.9 17 0.00058 36.2 12.3 43 1-48 1-45 (535)
66 3gt7_A Sensor protein; structu 77.0 26 0.00089 27.9 10.9 108 260-367 7-130 (154)
67 3l7i_A Teichoic acid biosynthe 74.9 12 0.00042 39.2 10.2 171 182-363 479-682 (729)
68 3ehd_A Uncharacterized conserv 65.5 15 0.0005 30.5 6.5 66 297-362 65-161 (162)
69 3k9c_A Transcriptional regulat 63.1 83 0.0028 28.0 13.0 133 317-463 80-213 (289)
70 2zay_A Response regulator rece 62.3 53 0.0018 25.5 10.0 108 259-366 7-130 (147)
71 3grc_A Sensor protein, kinase; 61.7 52 0.0018 25.2 10.8 106 260-365 6-128 (140)
72 4f3y_A DHPR, dihydrodipicolina 60.2 11 0.00039 34.2 5.3 42 294-335 66-107 (272)
73 3jte_A Response regulator rece 60.1 57 0.0019 25.1 10.5 104 261-364 4-123 (143)
74 2qr3_A Two-component system re 59.6 45 0.0015 25.6 8.5 106 260-365 3-127 (140)
75 1vi6_A 30S ribosomal protein S 59.4 13 0.00045 32.1 5.3 91 241-333 50-146 (208)
76 3h5i_A Response regulator/sens 59.0 60 0.002 25.0 10.6 105 260-364 5-124 (140)
77 3hzh_A Chemotaxis response reg 58.4 62 0.0021 25.6 9.3 62 302-363 84-156 (157)
78 2pln_A HP1043, response regula 58.3 60 0.002 24.8 9.5 103 259-364 17-133 (137)
79 3gl9_A Response regulator; bet 56.8 60 0.002 24.3 9.8 102 262-363 4-121 (122)
80 2gkg_A Response regulator homo 56.5 59 0.002 24.2 9.2 105 261-365 6-126 (127)
81 2qxy_A Response regulator; reg 55.2 60 0.0021 24.9 8.6 107 260-366 4-123 (142)
82 1e2b_A Enzyme IIB-cellobiose; 54.7 13 0.00044 28.3 4.0 60 263-323 7-71 (106)
83 3hdv_A Response regulator; PSI 54.6 68 0.0023 24.4 10.5 106 260-365 7-128 (136)
84 3jy6_A Transcriptional regulat 53.9 65 0.0022 28.4 9.5 146 301-463 63-209 (276)
85 3cg4_A Response regulator rece 53.8 72 0.0025 24.4 9.6 106 259-364 6-127 (142)
86 1mio_A Nitrogenase molybdenum 53.6 1.3E+02 0.0044 30.1 12.3 108 241-363 182-303 (533)
87 3kkl_A Probable chaperone prot 53.3 15 0.0005 32.8 4.8 44 1-47 1-51 (244)
88 1k68_A Phytochrome response re 51.2 77 0.0026 24.0 10.2 104 261-364 3-131 (140)
89 3hdg_A Uncharacterized protein 50.7 80 0.0027 24.0 9.2 105 260-364 7-125 (137)
90 3lua_A Response regulator rece 50.2 44 0.0015 25.7 6.9 107 260-366 4-129 (140)
91 3gd5_A Otcase, ornithine carba 49.5 1.6E+02 0.0055 27.2 11.6 118 182-310 104-234 (323)
92 3cg0_A Response regulator rece 49.3 84 0.0029 23.9 10.3 106 259-364 8-128 (140)
93 4dad_A Putative pilus assembly 49.1 71 0.0024 24.7 8.1 104 260-365 20-142 (146)
94 3mcu_A Dipicolinate synthase, 49.1 21 0.0007 30.9 4.9 39 1-45 1-40 (207)
95 3cnb_A DNA-binding response re 49.0 86 0.0029 23.9 10.5 107 260-366 8-132 (143)
96 1ml4_A Aspartate transcarbamoy 47.6 74 0.0025 29.3 8.7 121 182-310 101-230 (308)
97 2qsj_A DNA-binding response re 47.4 99 0.0034 24.1 8.8 107 260-366 3-126 (154)
98 4e7p_A Response regulator; DNA 47.1 99 0.0034 24.0 10.2 104 261-365 21-141 (150)
99 3heb_A Response regulator rece 47.0 99 0.0034 24.0 9.2 104 260-363 4-134 (152)
100 1qkk_A DCTD, C4-dicarboxylate 47.0 98 0.0033 24.2 8.7 102 260-364 3-121 (155)
101 3lqk_A Dipicolinate synthase s 47.0 25 0.00085 30.2 5.0 40 1-46 3-43 (201)
102 3pdi_A Nitrogenase MOFE cofact 46.6 1.8E+02 0.0062 28.5 12.0 89 261-364 204-301 (483)
103 2rdm_A Response regulator rece 45.7 93 0.0032 23.3 10.1 105 260-366 5-125 (132)
104 3mz0_A Inositol 2-dehydrogenas 45.3 85 0.0029 29.1 9.1 73 257-333 24-98 (344)
105 2rjn_A Response regulator rece 45.0 1.1E+02 0.0037 23.9 10.0 106 259-364 6-126 (154)
106 2pq6_A UDP-glucuronosyl/UDP-gl 45.0 15 0.00052 36.3 3.9 38 4-47 7-45 (482)
107 1fy2_A Aspartyl dipeptidase; s 44.9 1E+02 0.0034 26.9 8.9 90 244-336 17-124 (229)
108 3g85_A Transcriptional regulat 44.8 1.6E+02 0.0055 25.8 12.0 146 301-463 68-216 (289)
109 3j20_B 30S ribosomal protein S 44.8 24 0.00083 30.3 4.5 91 240-332 45-141 (202)
110 3t6k_A Response regulator rece 44.8 1E+02 0.0035 23.5 10.6 106 260-365 4-125 (136)
111 4fb5_A Probable oxidoreductase 44.7 66 0.0023 30.2 8.4 100 229-333 25-126 (393)
112 3ijp_A DHPR, dihydrodipicolina 44.4 18 0.00061 33.1 3.9 42 294-335 81-122 (288)
113 3uuw_A Putative oxidoreductase 44.3 59 0.002 29.6 7.7 70 258-333 29-98 (308)
114 3tb6_A Arabinose metabolism tr 44.1 1.7E+02 0.0057 25.8 15.0 105 244-367 30-138 (298)
115 3bch_A 40S ribosomal protein S 43.6 18 0.00062 32.2 3.7 92 241-333 85-182 (253)
116 2qip_A Protein of unknown func 43.6 64 0.0022 26.4 7.0 66 240-308 90-159 (165)
117 1p9l_A Dihydrodipicolinate red 43.5 48 0.0016 29.4 6.5 74 262-335 2-79 (245)
118 4hkt_A Inositol 2-dehydrogenas 42.7 96 0.0033 28.5 9.0 69 258-333 25-95 (331)
119 2j48_A Two-component sensor ki 42.1 64 0.0022 23.4 6.5 102 262-363 3-117 (119)
120 3csu_A Protein (aspartate carb 41.6 72 0.0025 29.4 7.6 122 182-310 99-230 (310)
121 3u80_A 3-dehydroquinate dehydr 41.5 81 0.0028 25.5 6.8 89 275-363 38-147 (151)
122 3hv2_A Response regulator/HD d 41.4 1.2E+02 0.0042 23.5 10.4 104 261-364 15-133 (153)
123 1pvv_A Otcase, ornithine carba 41.2 2.1E+02 0.0074 26.2 11.2 118 182-310 102-232 (315)
124 4gi5_A Quinone reductase; prot 40.8 20 0.00069 32.6 3.7 32 3-37 20-53 (280)
125 4ekn_B Aspartate carbamoyltran 40.6 1.1E+02 0.0038 28.0 8.7 122 182-310 97-227 (306)
126 2zkq_b 40S ribosomal protein S 40.6 19 0.00065 32.9 3.4 92 241-333 52-149 (295)
127 3u7q_A Nitrogenase molybdenum- 40.5 1.4E+02 0.0048 29.5 10.1 90 241-332 192-298 (492)
128 1rrv_A Glycosyltransferase GTF 39.7 18 0.00062 34.7 3.4 33 8-46 3-36 (416)
129 1k66_A Phytochrome response re 39.4 1.3E+02 0.0043 23.0 9.4 105 260-364 6-138 (149)
130 1dbw_A Transcriptional regulat 39.1 1.2E+02 0.004 22.6 11.3 102 260-364 3-121 (126)
131 3lte_A Response regulator; str 39.1 1.2E+02 0.0041 22.7 10.4 106 260-365 6-126 (132)
132 3m6m_D Sensory/regulatory prot 38.9 1.3E+02 0.0045 23.1 9.6 105 260-364 14-136 (143)
133 1iir_A Glycosyltransferase GTF 38.9 16 0.00056 35.0 3.0 33 8-46 3-36 (415)
134 3ec7_A Putative dehydrogenase; 38.9 1.3E+02 0.0046 27.9 9.4 95 229-333 23-119 (357)
135 3iz6_A 40S ribosomal protein S 38.7 30 0.001 31.6 4.3 93 240-333 55-153 (305)
136 2qzj_A Two-component response 38.4 1.3E+02 0.0044 22.9 9.5 105 260-364 4-121 (136)
137 2f62_A Nucleoside 2-deoxyribos 38.1 81 0.0028 25.9 6.6 37 297-333 63-106 (161)
138 4fyk_A Deoxyribonucleoside 5'- 37.7 37 0.0013 27.7 4.4 67 297-364 64-142 (152)
139 2l2q_A PTS system, cellobiose- 37.6 1.3E+02 0.0044 22.6 7.7 91 263-364 8-105 (109)
140 3db2_A Putative NADPH-dependen 36.8 1.2E+02 0.004 28.2 8.6 70 258-333 27-98 (354)
141 3eul_A Possible nitrate/nitrit 36.7 1.5E+02 0.005 23.0 11.4 107 259-366 14-137 (152)
142 3f6c_A Positive transcription 36.6 1.3E+02 0.0045 22.5 11.5 106 261-366 2-122 (134)
143 2hy5_B Intracellular sulfur ox 36.4 26 0.00091 27.9 3.3 30 7-37 7-36 (136)
144 2xzm_B RPS0E; ribosome, transl 36.2 31 0.0011 30.5 4.0 92 241-333 47-145 (241)
145 2i6u_A Otcase, ornithine carba 36.0 2.6E+02 0.0088 25.6 11.5 119 182-310 95-226 (307)
146 1h05_A 3-dehydroquinate dehydr 35.9 80 0.0027 25.4 5.9 90 274-363 35-142 (146)
147 3h1g_A Chemotaxis protein CHEY 35.9 1.4E+02 0.0046 22.4 9.7 105 260-364 5-127 (129)
148 3nbm_A PTS system, lactose-spe 35.8 92 0.0031 23.6 6.2 70 263-333 10-86 (108)
149 4had_A Probable oxidoreductase 35.6 1E+02 0.0035 28.5 7.9 93 230-333 24-118 (350)
150 3ilh_A Two component response 35.4 1.5E+02 0.005 22.6 10.5 106 260-365 9-140 (146)
151 2b4a_A BH3024; flavodoxin-like 35.4 1.4E+02 0.0049 22.5 8.8 106 259-364 14-131 (138)
152 3cz5_A Two-component response 35.3 1.5E+02 0.0053 22.9 8.8 104 260-365 5-126 (153)
153 2w37_A Ornithine carbamoyltran 35.3 2.9E+02 0.0098 25.9 11.4 119 182-310 123-254 (359)
154 2vch_A Hydroquinone glucosyltr 35.0 24 0.00083 34.8 3.5 36 6-47 7-44 (480)
155 1rcu_A Conserved hypothetical 34.9 39 0.0013 28.8 4.3 62 297-360 114-191 (195)
156 4h3v_A Oxidoreductase domain p 34.8 84 0.0029 29.4 7.3 97 229-333 6-107 (390)
157 3kto_A Response regulator rece 34.8 85 0.0029 23.9 6.2 103 260-365 6-127 (136)
158 2acv_A Triterpene UDP-glucosyl 34.7 24 0.00081 34.7 3.4 36 6-47 10-48 (463)
159 1dxh_A Ornithine carbamoyltran 34.6 2.8E+02 0.0097 25.7 11.2 119 182-310 101-233 (335)
160 1duv_G Octase-1, ornithine tra 34.3 2.8E+02 0.0097 25.6 11.6 119 182-310 100-233 (333)
161 3n7t_A Macrophage binding prot 34.3 45 0.0016 29.6 4.9 40 7-47 11-57 (247)
162 3u5c_A 40S ribosomal protein S 34.2 26 0.00089 31.2 3.2 92 240-332 50-147 (252)
163 3al2_A DNA topoisomerase 2-bin 34.2 26 0.00089 30.9 3.2 67 259-333 8-75 (235)
164 3jvd_A Transcriptional regulat 34.2 2.4E+02 0.0082 25.6 10.3 141 301-463 119-259 (333)
165 2q5c_A NTRC family transcripti 33.8 2E+02 0.0067 24.2 8.7 101 244-363 80-182 (196)
166 4ep1_A Otcase, ornithine carba 33.5 3E+02 0.01 25.6 11.8 118 182-310 126-256 (340)
167 2gwr_A DNA-binding response re 33.2 2.3E+02 0.0077 24.1 10.2 105 261-365 6-123 (238)
168 2iz6_A Molybdenum cofactor car 33.2 55 0.0019 27.4 4.9 66 297-364 103-174 (176)
169 3snk_A Response regulator CHEY 33.0 93 0.0032 23.6 6.2 105 260-364 14-133 (135)
170 3e9m_A Oxidoreductase, GFO/IDH 32.8 1.5E+02 0.005 27.3 8.4 92 230-333 6-99 (330)
171 4dgk_A Phytoene dehydrogenase; 32.6 29 0.00098 34.2 3.6 30 7-59 3-32 (501)
172 3n8k_A 3-dehydroquinate dehydr 32.5 1E+02 0.0036 25.4 6.2 61 303-363 97-168 (172)
173 2pl1_A Transcriptional regulat 32.3 1.5E+02 0.005 21.7 10.1 103 262-364 2-118 (121)
174 1qzu_A Hypothetical protein MD 32.1 53 0.0018 28.2 4.8 40 1-46 15-55 (206)
175 3euw_A MYO-inositol dehydrogen 32.1 1.5E+02 0.0052 27.3 8.5 91 230-333 5-97 (344)
176 1mb3_A Cell division response 31.8 1.5E+02 0.0052 21.7 9.7 101 262-365 3-122 (124)
177 2d1p_A TUSD, hypothetical UPF0 31.5 29 0.001 27.8 2.8 32 2-37 12-43 (140)
178 3rqi_A Response regulator prot 31.0 1.2E+02 0.004 24.8 6.8 104 260-363 7-124 (184)
179 3i42_A Response regulator rece 30.8 1.6E+02 0.0055 21.7 9.1 105 260-364 3-122 (127)
180 3r0j_A Possible two component 30.6 2.6E+02 0.0088 24.0 10.6 105 260-364 23-141 (250)
181 3to5_A CHEY homolog; alpha(5)b 30.5 1.9E+02 0.0066 22.5 9.1 102 259-363 11-132 (134)
182 3eod_A Protein HNR; response r 30.2 1.7E+02 0.0057 21.7 8.8 103 259-364 6-126 (130)
183 3cfy_A Putative LUXO repressor 30.1 1.8E+02 0.0061 22.0 10.3 103 262-364 6-122 (137)
184 3f6p_A Transcriptional regulat 29.9 1.7E+02 0.0057 21.5 9.7 103 262-364 4-119 (120)
185 3kke_A LACI family transcripti 29.8 2.9E+02 0.01 24.4 17.3 146 302-463 72-225 (303)
186 3dfz_A SIRC, precorrin-2 dehyd 29.8 48 0.0017 28.9 4.2 26 3-37 29-54 (223)
187 2jba_A Phosphate regulon trans 29.8 1.7E+02 0.0057 21.5 7.4 100 262-364 4-122 (127)
188 3uug_A Multiple sugar-binding 29.8 3E+02 0.01 24.5 10.3 62 300-363 58-121 (330)
189 3nhm_A Response regulator; pro 29.4 1.8E+02 0.006 21.7 10.9 104 261-365 5-123 (133)
190 3moi_A Probable dehydrogenase; 29.3 1.2E+02 0.0042 28.6 7.4 70 258-333 25-96 (387)
191 2pju_A Propionate catabolism o 29.2 2.1E+02 0.0071 24.8 8.2 101 244-363 92-193 (225)
192 1vlv_A Otcase, ornithine carba 29.2 3.4E+02 0.012 25.0 11.0 119 182-310 114-245 (325)
193 3ezy_A Dehydrogenase; structur 28.9 2.4E+02 0.0084 25.8 9.4 71 258-333 24-96 (344)
194 3kht_A Response regulator; PSI 28.8 1.9E+02 0.0066 21.9 10.6 105 260-364 5-128 (144)
195 3crn_A Response regulator rece 28.2 1.9E+02 0.0064 21.6 10.5 104 261-364 4-121 (132)
196 3rot_A ABC sugar transporter, 28.2 3.1E+02 0.011 24.1 11.4 65 301-365 61-127 (297)
197 3i83_A 2-dehydropantoate 2-red 28.1 39 0.0014 31.1 3.5 33 1-59 1-33 (320)
198 1kyq_A Met8P, siroheme biosynt 28.1 62 0.0021 29.2 4.7 37 3-49 11-47 (274)
199 3n53_A Response regulator rece 28.1 1.9E+02 0.0066 21.8 8.8 103 261-364 4-122 (140)
200 3hn2_A 2-dehydropantoate 2-red 28.1 44 0.0015 30.7 3.8 33 1-59 1-33 (312)
201 1ys7_A Transcriptional regulat 27.9 2.7E+02 0.0092 23.3 11.3 105 260-364 7-125 (233)
202 1rw7_A YDR533CP; alpha-beta sa 27.6 66 0.0022 28.3 4.8 43 1-46 1-50 (243)
203 2vzf_A NADH-dependent FMN redu 27.5 47 0.0016 28.1 3.6 31 1-37 1-34 (197)
204 3lwz_A 3-dehydroquinate dehydr 27.5 1.1E+02 0.0037 24.8 5.4 88 275-362 41-146 (153)
205 3m9w_A D-xylose-binding peripl 27.5 3.2E+02 0.011 24.2 10.7 59 301-362 58-118 (313)
206 2ho3_A Oxidoreductase, GFO/IDH 27.4 1.2E+02 0.0042 27.6 6.9 71 258-333 23-94 (325)
207 3cu5_A Two component transcrip 27.1 2.1E+02 0.0071 21.8 9.0 103 262-364 4-123 (141)
208 1jbe_A Chemotaxis protein CHEY 27.1 1.9E+02 0.0064 21.3 10.1 104 260-363 4-124 (128)
209 3g17_A Similar to 2-dehydropan 27.1 42 0.0014 30.5 3.5 25 1-37 1-25 (294)
210 3gvp_A Adenosylhomocysteinase 27.0 2.4E+02 0.0083 27.2 8.8 41 295-335 269-310 (435)
211 2wqk_A 5'-nucleotidase SURE; S 27.0 87 0.003 27.8 5.4 36 7-50 3-39 (251)
212 3l49_A ABC sugar (ribose) tran 26.8 2.5E+02 0.0085 24.5 8.8 59 301-363 61-120 (291)
213 1srr_A SPO0F, sporulation resp 26.7 1.9E+02 0.0065 21.2 8.8 104 261-364 4-121 (124)
214 3h9u_A Adenosylhomocysteinase; 26.7 1.2E+02 0.004 29.5 6.6 42 294-335 259-301 (436)
215 3q2i_A Dehydrogenase; rossmann 26.7 1.7E+02 0.0058 27.1 7.8 93 229-333 13-107 (354)
216 1p3y_1 MRSD protein; flavoprot 26.5 75 0.0026 27.0 4.7 30 3-37 6-35 (194)
217 2a5l_A Trp repressor binding p 26.3 48 0.0016 27.8 3.5 30 1-37 3-34 (200)
218 3p2y_A Alanine dehydrogenase/p 26.2 2.5E+02 0.0085 26.6 8.7 37 297-333 261-303 (381)
219 8abp_A L-arabinose-binding pro 26.2 2.9E+02 0.01 24.2 9.3 33 301-333 57-90 (306)
220 3gv0_A Transcriptional regulat 26.1 3.3E+02 0.011 23.8 14.4 148 301-463 66-216 (288)
221 3u3x_A Oxidoreductase; structu 26.0 1.8E+02 0.0063 27.0 7.9 93 229-333 26-120 (361)
222 3a10_A Response regulator; pho 26.0 1.9E+02 0.0064 20.8 9.7 101 262-362 3-115 (116)
223 1zq6_A Otcase, ornithine carba 26.0 3.5E+02 0.012 25.4 9.5 102 198-309 156-273 (359)
224 2vou_A 2,6-dihydroxypyridine h 25.9 59 0.002 30.8 4.5 34 1-44 1-34 (397)
225 1jg7_A BGT, DNA beta-glucosylt 25.8 1.6E+02 0.0056 25.4 6.5 126 230-365 182-317 (351)
226 1i3c_A Response regulator RCP1 25.6 2.3E+02 0.0078 21.8 10.7 103 260-363 8-136 (149)
227 3kkj_A Amine oxidase, flavin-c 25.6 58 0.002 28.0 4.1 31 1-44 1-31 (336)
228 3n58_A Adenosylhomocysteinase; 25.5 3.6E+02 0.012 26.3 9.7 41 295-335 296-337 (464)
229 2a9o_A Response regulator; ess 25.4 1.9E+02 0.0066 20.8 10.3 103 262-364 3-118 (120)
230 1gqo_A Dehydroquinase; dehydra 25.2 1.4E+02 0.0047 23.9 5.6 89 274-362 33-139 (143)
231 2uyg_A 3-dehydroquinate dehydr 24.8 1.9E+02 0.0067 23.2 6.4 90 274-363 32-140 (149)
232 3egc_A Putative ribose operon 24.7 3.5E+02 0.012 23.6 15.2 62 301-367 64-126 (291)
233 3geb_A EYES absent homolog 2; 24.7 56 0.0019 29.0 3.5 27 248-274 217-244 (274)
234 1zh8_A Oxidoreductase; TM0312, 24.7 1.8E+02 0.0062 26.8 7.5 95 228-333 17-114 (340)
235 3lxy_A 4-hydroxythreonine-4-ph 24.5 82 0.0028 29.3 4.8 72 285-363 241-327 (334)
236 2lpm_A Two-component response 24.4 2.4E+02 0.0082 21.6 7.2 101 260-362 8-120 (123)
237 3q9s_A DNA-binding response re 24.3 3.4E+02 0.012 23.3 9.0 106 260-365 37-155 (249)
238 3p0r_A Azoreductase; structura 24.2 61 0.0021 27.8 3.8 32 1-36 3-36 (211)
239 3kip_A 3-dehydroquinase, type 24.2 1.1E+02 0.0037 25.2 4.9 61 304-364 87-158 (167)
240 1kgs_A DRRD, DNA binding respo 24.2 3.1E+02 0.011 22.8 10.9 104 261-364 3-120 (225)
241 3c97_A Signal transduction his 24.2 2.3E+02 0.0079 21.3 10.1 104 261-364 11-130 (140)
242 1p2f_A Response regulator; DRR 24.1 1.9E+02 0.0066 24.1 7.2 100 262-365 4-118 (220)
243 3bbn_B Ribosomal protein S2; s 24.0 2.1E+02 0.0073 24.9 7.2 30 303-333 159-188 (231)
244 2vxb_A DNA repair protein RHP9 23.8 89 0.003 27.5 4.9 73 259-332 4-97 (241)
245 4hb9_A Similarities with proba 23.8 55 0.0019 30.8 3.8 30 2-44 1-30 (412)
246 2qv0_A Protein MRKE; structura 23.7 2.4E+02 0.0081 21.3 10.6 104 260-364 9-127 (143)
247 3h75_A Periplasmic sugar-bindi 23.6 2.8E+02 0.0094 25.2 8.7 44 420-463 190-233 (350)
248 1ydw_A AX110P-like protein; st 23.6 2.2E+02 0.0075 26.4 8.0 93 230-333 7-103 (362)
249 3rc1_A Sugar 3-ketoreductase; 23.5 2.2E+02 0.0074 26.3 7.9 93 229-333 27-121 (350)
250 3sqd_A PAX-interacting protein 23.4 51 0.0018 28.6 3.1 63 260-333 16-79 (219)
251 2glx_A 1,5-anhydro-D-fructose 23.4 2.8E+02 0.0095 25.2 8.6 69 259-332 23-93 (332)
252 1zgz_A Torcad operon transcrip 23.2 2.2E+02 0.0075 20.7 10.3 104 261-364 3-119 (122)
253 1tlt_A Putative oxidoreductase 23.1 2.3E+02 0.0079 25.6 7.9 70 258-333 28-97 (319)
254 3cea_A MYO-inositol 2-dehydrog 22.9 3.3E+02 0.011 24.8 9.1 94 229-333 8-103 (346)
255 3ohs_X Trans-1,2-dihydrobenzen 22.9 2.1E+02 0.0071 26.2 7.5 69 260-333 28-98 (334)
256 2m1z_A LMO0427 protein; homolo 22.7 52 0.0018 24.9 2.6 30 1-37 1-33 (106)
257 2ayx_A Sensor kinase protein R 22.6 3.7E+02 0.013 23.2 11.4 104 261-364 130-247 (254)
258 2qvg_A Two component response 22.1 2.5E+02 0.0087 21.0 9.7 104 260-363 7-134 (143)
259 1uqr_A 3-dehydroquinate dehydr 22.0 1.3E+02 0.0045 24.4 4.9 88 275-362 35-140 (154)
260 4gqa_A NAD binding oxidoreduct 21.9 3.3E+02 0.011 25.7 9.0 97 229-333 26-128 (412)
261 2khz_A C-MYC-responsive protei 21.9 98 0.0034 25.4 4.5 66 297-364 73-151 (165)
262 3v5n_A Oxidoreductase; structu 21.8 4.8E+02 0.016 24.7 10.1 73 258-333 62-142 (417)
263 3ego_A Probable 2-dehydropanto 21.5 65 0.0022 29.4 3.6 32 1-59 1-32 (307)
264 2hy5_A Putative sulfurtransfer 21.3 54 0.0019 25.6 2.6 29 8-37 3-31 (130)
265 3dah_A Ribose-phosphate pyroph 21.3 71 0.0024 29.6 3.8 45 3-48 52-96 (319)
266 3evn_A Oxidoreductase, GFO/IDH 21.2 2.1E+02 0.007 26.2 7.1 92 230-333 6-99 (329)
267 3hsi_A Phosphatidylserine synt 21.2 91 0.0031 30.5 4.8 37 6-49 272-309 (458)
268 3aek_A Light-independent proto 21.0 2.5E+02 0.0087 27.0 8.0 109 241-364 164-278 (437)
269 3ip3_A Oxidoreductase, putativ 21.0 2.2E+02 0.0074 26.1 7.3 73 258-333 22-99 (337)
270 2hqr_A Putative transcriptiona 20.9 2.4E+02 0.0081 23.6 7.1 101 262-365 2-116 (223)
271 3mc3_A DSRE/DSRF-like family p 20.9 51 0.0018 26.0 2.4 31 6-37 16-46 (134)
272 3fw2_A Thiol-disulfide oxidore 20.9 2.9E+02 0.0098 21.2 12.0 75 229-304 34-114 (150)
273 2czc_A Glyceraldehyde-3-phosph 20.9 3.8E+02 0.013 24.6 8.9 80 247-333 17-111 (334)
274 3k4h_A Putative transcriptiona 20.7 4.1E+02 0.014 23.0 15.1 44 420-463 177-220 (292)
275 3s5j_B Ribose-phosphate pyroph 20.7 76 0.0026 29.5 3.8 45 3-48 48-92 (326)
276 2oqr_A Sensory transduction pr 20.6 3.1E+02 0.011 22.9 7.9 105 261-365 5-122 (230)
277 3dty_A Oxidoreductase, GFO/IDH 20.5 4.4E+02 0.015 24.7 9.6 73 258-333 37-117 (398)
278 1yio_A Response regulatory pro 20.3 3.5E+02 0.012 22.0 8.4 101 261-364 5-122 (208)
279 3kb6_A D-lactate dehydrogenase 20.3 2.8E+02 0.0094 25.6 7.7 41 295-335 188-233 (334)
280 1xhf_A DYE resistance, aerobic 20.2 2.5E+02 0.0087 20.3 10.8 104 261-364 4-120 (123)
281 4ew6_A D-galactose-1-dehydroge 20.1 96 0.0033 28.6 4.5 86 229-333 25-113 (330)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=7e-38 Score=311.84 Aligned_cols=349 Identities=14% Similarity=0.127 Sum_probs=243.1
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcchh-HHHHHHHHhh
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQH-ETYVRRWLEE 79 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~~-~~~~~~~~~~ 79 (467)
|+++ +||+++++.|+|..+|........++.| +| |+|.|++.. ..... ..+ .
T Consensus 1 M~~~-mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g--------------~~v~v~~~~----~~~~~~~~~------~ 53 (394)
T 3okp_A 1 MSAS-RKTLVVTNDFPPRIGGIQSYLRDFIATQ--DP--------------ESIVVFAST----QNAEEAHAY------D 53 (394)
T ss_dssp ---C-CCEEEEESCCTTSCSHHHHHHHHHHTTS--CG--------------GGEEEEEEC----SSHHHHHHH------H
T ss_pred CCCC-ceEEEEeCccCCccchHHHHHHHHHHHh--cC--------------CeEEEEECC----CCccchhhh------c
Confidence 5433 4599999999999888553334445888 58 666664332 11111 110 0
Q ss_pred hcCCCCCccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-c-EEEEEecchHHHH
Q 012256 80 RTGFTSTFDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-Y-VVGIVHTNYLEYV 157 (467)
Q Consensus 80 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~h~~~~~~~ 157 (467)
....+.+...+.. ...........+.+.+++.+||+||++.+....+.. .+.++.+ | ++.++|+....+.
T Consensus 54 ---~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~---~~~~~~~~~~~i~~~h~~~~~~~ 125 (394)
T 3okp_A 54 ---KTLDYEVIRWPRS--VMLPTPTTAHAMAEIIREREIDNVWFGAAAPLALMA---GTAKQAGASKVIASTHGHEVGWS 125 (394)
T ss_dssp ---TTCSSEEEEESSS--SCCSCHHHHHHHHHHHHHTTCSEEEESSCTTGGGGH---HHHHHTTCSEEEEECCSTHHHHT
T ss_pred ---cccceEEEEcccc--ccccchhhHHHHHHHHHhcCCCEEEECCcchHHHHH---HHHHhcCCCcEEEEeccchhhhh
Confidence 1111222222221 011122233457778888899999998766555442 1222223 4 8889998765332
Q ss_pred HhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHHhhh------cccccc-cccCCCcccc-chhh-HHHh-hcCCCC
Q 012256 158 KREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYAN------SIICNV-HGVNPKFLEI-GKKK-KEQQ-QNGTHA 227 (467)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~------~~i~~i-~gvd~~~~~~-~~~~-~~~~-~~~~~~ 227 (467)
. .. .....+.... ..+|.++++|+...+... .++..+ ||+|.+.|.+ .... ...+ ....++
T Consensus 126 ~---~~----~~~~~~~~~~--~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~ 196 (394)
T 3okp_A 126 M---LP----GSRQSLRKIG--TEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTD 196 (394)
T ss_dssp T---SH----HHHHHHHHHH--HHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCT
T ss_pred h---cc----hhhHHHHHHH--HhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCc
Confidence 1 11 1112222222 236999999987664432 233344 7999888876 3222 2222 233344
Q ss_pred CCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeE
Q 012256 228 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVF 305 (467)
Q Consensus 228 ~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~ 305 (467)
+.+.++|+|++.+.||++.+++++..+.++.++++|+|+|+|+..+.+++.+.++..++.|+|.+++.+ ++|+.||++
T Consensus 197 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~ 276 (394)
T 3okp_A 197 TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIF 276 (394)
T ss_dssp TCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEE
T ss_pred CceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEE
Confidence 568999999999999999999999999988899999999999999999988855556899999998777 999999999
Q ss_pred EecCCC-------CCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHH
Q 012256 306 LNPSTT-------DVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ 373 (467)
Q Consensus 306 v~ps~~-------e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~ 373 (467)
|+||.. |++|++++||||||+|||+|+.|+ .|++.++ +|++++ |+++++++|.++++++.. .+++++
T Consensus 277 v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~ 355 (394)
T 3okp_A 277 AMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAG 355 (394)
T ss_dssp EECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EecCccccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999 999999999999999999999966 5889888 999998 999999999999997654 454443
Q ss_pred H----HcCCHHHHHHHHHHHHhccc
Q 012256 374 R----HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 374 ~----~~~sw~~~~~~~~~~~~~~~ 394 (467)
+ ++|||+.+++++.++|+...
T Consensus 356 ~~~~~~~~s~~~~~~~~~~~~~~~~ 380 (394)
T 3okp_A 356 RAHVEAEWSWEIMGERLTNILQSEP 380 (394)
T ss_dssp HHHHHHHTBHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 3 57999999999999999654
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=1.7e-36 Score=306.14 Aligned_cols=273 Identities=16% Similarity=0.147 Sum_probs=198.5
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHH-----hhccchHHHHHH-HHHHHHhhhhhcCEEEE
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVK-----REKNGRLQAFLL-KYANSWLVDIYCHKVIR 187 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~ 187 (467)
..+||+||++........ ..+.+..+ |++.++|+....... ............ ...... ...||.+++
T Consensus 120 ~~~~Dii~~~~~~~~~~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ad~ii~ 194 (439)
T 3fro_A 120 EPLPDVVHFHDWHTVFAG---ALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTG--GYIADIVTT 194 (439)
T ss_dssp SCCCSEEEEESGGGHHHH---HHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHH--HHHCSEEEE
T ss_pred CCCCeEEEecchhhhhhH---HHHhhccCCCEEEEecccccccCchHHhCccccccccccceeeHhhhh--hhhccEEEe
Confidence 679999999865432222 12222234 999999987532110 000000000000 111111 123699999
Q ss_pred cCHhhHHh-------hhcccccc-cccCCCccccch-------hhHHHh-hcCCCCCCceEEEEeccc-cccCHHHHHHH
Q 012256 188 LSAATQEY-------ANSIICNV-HGVNPKFLEIGK-------KKKEQQ-QNGTHAFAKGAYYIGKMV-WSKGYKELLEL 250 (467)
Q Consensus 188 ~S~~~~~~-------~~~~i~~i-~gvd~~~~~~~~-------~~~~~~-~~~~~~~~~~il~vGrl~-~~Kg~~~li~a 250 (467)
+|+...+. ...++.++ ||+|.+.|.+.. .....+ ....+++ +.++|+|++. +.||++.+++|
T Consensus 195 ~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a 273 (439)
T 3fro_A 195 VSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKA 273 (439)
T ss_dssp SCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHH
T ss_pred cCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHH
Confidence 99765532 23445555 899998887652 111222 2222343 8999999999 99999999999
Q ss_pred HHHHHhhc--CCeEEEEEecCCCH--HHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHc
Q 012256 251 LDDHQKEL--AGLEVDLYGNGEDF--NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAM 324 (467)
Q Consensus 251 ~~~l~~~~--~~~~l~i~G~g~~~--~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~ 324 (467)
+..+.++. ++++|+|+|+|+.. +.+++++++++..+.+.|.+++.+ ++|+.||++|+||..|++|++++|||||
T Consensus 274 ~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~ 353 (439)
T 3fro_A 274 IEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCL 353 (439)
T ss_dssp HHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHT
T ss_pred HHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHC
Confidence 99998766 89999999999886 889999999884445567788877 9999999999999999999999999999
Q ss_pred CCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHh-cCCC--CccHHHH---HcCCHHHHHHHHHHHHhccc
Q 012256 325 GKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALA-EEPA--LPTEAQR---HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 325 G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~-~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~~ 394 (467)
|+|||+|+.|+ .|++.++ +|++++ |+++++++|.++++ ++.. .++++++ ++|||+.++++++++|+...
T Consensus 354 G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (439)
T 3fro_A 354 GAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSI 431 (439)
T ss_dssp TCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCS
T ss_pred CCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 99999999977 4888776 898887 99999999999999 6554 4555443 67999999999999999654
No 3
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.1e-35 Score=296.69 Aligned_cols=279 Identities=15% Similarity=0.110 Sum_probs=205.4
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhh-hhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHH-GKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~-~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++.+||+||++.+....+... .........|++.++|+.+..... ....... .....+ ..+|.+
T Consensus 89 ~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~--~~~~~~~----~~~~~~--~~ad~i 160 (394)
T 2jjm_A 89 SKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLG--SDPSLNN----LIRFGI--EQSDVV 160 (394)
T ss_dssp HHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTT--TCTTTHH----HHHHHH--HHSSEE
T ss_pred HHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccC--CCHHHHH----HHHHHH--hhCCEE
Confidence 3466677788999999986543332210 111111124889999986543221 1111111 111211 236999
Q ss_pred EEcCHhhHHhhh------cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhc
Q 012256 186 IRLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 258 (467)
Q Consensus 186 i~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~ 258 (467)
+++|+...+... .++.++ ||+|...|.+............+++.+.++|+|++.+.||++.+++|+..+.++
T Consensus 161 i~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~- 239 (394)
T 2jjm_A 161 TAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE- 239 (394)
T ss_dssp EESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-
T ss_pred EECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-
Confidence 999987664432 234444 799988887654332222333334567999999999999999999999999876
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-
Q 012256 259 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 335 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~- 335 (467)
++++|+|+|+|++.+.+++.++++++ ++.|.|..++..++|+.||++|+||..|++|++++||||||+|||+|+.|+
T Consensus 240 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~ 319 (394)
T 2jjm_A 240 VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGI 319 (394)
T ss_dssp SCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTS
T ss_pred CCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCCh
Confidence 67999999999999999999998876 688889765555999999999999999999999999999999999999966
Q ss_pred ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHHHHHhccc
Q 012256 336 NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 336 ~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~ 394 (467)
.|++.++.+|++++ |+++++++|.+++++++. .++++++ ++|||+.++++++++|+...
T Consensus 320 ~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 320 PEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVL 386 (394)
T ss_dssp TTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC
T ss_pred HHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 58999989999998 999999999999997654 4444332 78999999999999999654
No 4
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=3.2e-35 Score=295.38 Aligned_cols=270 Identities=14% Similarity=0.087 Sum_probs=201.7
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE-
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI- 186 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi- 186 (467)
.+.+.+++.+||+||++.+....+.. +..+..|++.++|+...... ...++.+.+++.+ +|.++
T Consensus 117 ~~~~~l~~~~~Dvv~~~~~~~~~~~~----~~~~~~p~v~~~h~~~~~~~---------~~~~~~~~~~~~~--~~~~i~ 181 (416)
T 2x6q_A 117 ENSKFIDLSSFDYVLVHDPQPAALIE----FYEKKSPWLWRCHIDLSSPN---------REFWEFLRRFVEK--YDRYIF 181 (416)
T ss_dssp HHHHSSCGGGSSEEEEESSTTGGGGG----GSCCCSCEEEECCSCCSSCC---------HHHHHHHHHHHTT--SSEEEE
T ss_pred HHHHHHhhcCCCEEEEeccchhhHHH----HHHhcCCEEEEEccccCCcc---------HHHHHHHHHHHHh--CCEEEE
Confidence 35667778899999998766544431 22222689999998653211 1223334443322 46666
Q ss_pred EcCHhhHH-hhhcccccc-cccCCCccccch----hhHHHh-hcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcC
Q 012256 187 RLSAATQE-YANSIICNV-HGVNPKFLEIGK----KKKEQQ-QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA 259 (467)
Q Consensus 187 ~~S~~~~~-~~~~~i~~i-~gvd~~~~~~~~----~~~~~~-~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~ 259 (467)
++|+..++ +...++.++ ||+|...+.+.. .....+ ....+++++.++|+||+.+.||++.+++|+..+.++.|
T Consensus 182 ~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~ 261 (416)
T 2x6q_A 182 HLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIP 261 (416)
T ss_dssp SSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCT
T ss_pred echHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCC
Confidence 55565554 333455555 799976664321 111222 23334567899999999999999999999999998889
Q ss_pred CeEEEEEecCCC-----HHHHHHHHHhcCC--eeEEecCCC---CHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCe
Q 012256 260 GLEVDLYGNGED-----FNQIQEAAEKLKI--VVRVYPGRD---HAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 327 (467)
Q Consensus 260 ~~~l~i~G~g~~-----~~~l~~~~~~~~~--~v~~~g~~~---~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~P 327 (467)
+++|+|+|+|++ .+.++++++++++ +|+|+|.++ +.+ ++|+.||++|+||..|++|++++||||||+|
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~P 341 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKP 341 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCC
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCC
Confidence 999999999975 4567777777775 799999764 344 9999999999999999999999999999999
Q ss_pred EEEeCCCC-ccccccCCCEEeeCCHHHHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHHHHHhc
Q 012256 328 VVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAEL 392 (467)
Q Consensus 328 VV~t~~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~ 392 (467)
||+|+.|+ .|++.++.+|++++|+++++++|.++++++.. .++++++ ++|||+.+++++.++|+.
T Consensus 342 vI~~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 342 VIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDILNS 413 (416)
T ss_dssp EEEESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHT
T ss_pred EEEccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999966 58999999999999999999999999997654 4454433 589999999999999984
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.2e-35 Score=300.41 Aligned_cols=275 Identities=14% Similarity=0.119 Sum_probs=197.7
Q ss_pred CCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhcc-chHHHHHHHHHHHHhhhhhcCEEEEcCHhhHH
Q 012256 117 VADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKN-GRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 194 (467)
Q Consensus 117 ~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 194 (467)
+||+||++.... .+. +..+.+..+ |++.++|+........... ..........+.+. ....+|.++++|+...+
T Consensus 122 ~~Div~~~~~~~-~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~~s~~~~~ 197 (438)
T 3c48_A 122 TYDLIHSHYWLS-GQV--GWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQ-LVDNADVLAVNTQEEMQ 197 (438)
T ss_dssp CCSEEEEEHHHH-HHH--HHHHHHHHTCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHH-HHHHCSEEEESSHHHHH
T ss_pred CCCEEEeCCccH-HHH--HHHHHHHcCCCEEEEecCCcccccccccccCCcchHHHHHHHHH-HHhcCCEEEEcCHHHHH
Confidence 499999975321 111 112232234 9999999876432110000 00111122222222 12237999999977554
Q ss_pred hhh-------cccccc-cccCCCccccchhhH---HHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcC--Ce
Q 012256 195 YAN-------SIICNV-HGVNPKFLEIGKKKK---EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA--GL 261 (467)
Q Consensus 195 ~~~-------~~i~~i-~gvd~~~~~~~~~~~---~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~--~~ 261 (467)
... .++.++ ||+|...|.+..... ........+++++++|+|++.+.||++.+++|+..+.++.| ++
T Consensus 198 ~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~ 277 (438)
T 3c48_A 198 DLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNL 277 (438)
T ss_dssp HHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSE
T ss_pred HHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcce
Confidence 332 234444 799988877643221 22223334557899999999999999999999999998876 89
Q ss_pred EEEEEec----CCCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 262 EVDLYGN----GEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 262 ~l~i~G~----g~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+|+|+|+ |+..+.+++.++++++ ++.|+|.+++.+ ++|+.||++|+||..|++|++++||||||+|||+++.
T Consensus 278 ~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~ 357 (438)
T 3c48_A 278 RVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARV 357 (438)
T ss_dssp EEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESC
T ss_pred EEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCC
Confidence 9999998 7788889999998876 699999998777 9999999999999999999999999999999999999
Q ss_pred CC-ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhcccc
Q 012256 334 PS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELDQA 395 (467)
Q Consensus 334 g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~~~ 395 (467)
|+ .|++.++.+|++++ |+++++++|.++++++.. .++++++ ..|||+.++++++++|+....
T Consensus 358 ~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 427 (438)
T 3c48_A 358 GGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIA 427 (438)
T ss_dssp TTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 76 58999999999988 999999999999997654 4444433 349999999999999996553
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=9.6e-36 Score=306.44 Aligned_cols=284 Identities=13% Similarity=0.079 Sum_probs=203.7
Q ss_pred hhhccCCC--CCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhcc-----chHHHH----HHHHHHH
Q 012256 108 DISEVIPD--EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKN-----GRLQAF----LLKYANS 175 (467)
Q Consensus 108 ~l~~~l~~--~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~-----~~~~~~----~~~~~~~ 175 (467)
.+.+.+++ .+||+||++... ..+. +..+.+..+ |++.++|+........... +.+... ....+.+
T Consensus 109 ~l~~~l~~~~~~~Divh~~~~~-~~~~--~~~~~~~~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (499)
T 2r60_A 109 KIINFYREEGKFPQVVTTHYGD-GGLA--GVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAER 185 (499)
T ss_dssp HHHHHHHHHTCCCSEEEEEHHH-HHHH--HHHHHHHHCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEcCCc-chHH--HHHHHHhcCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHH
Confidence 35555665 589999997642 2222 222333334 8999999976544321110 001111 1111222
Q ss_pred HhhhhhcCEEEEcCHhhHHhhh--------------cccccc-cccCCCccccchh----hHHHhhcC-----CCCCCce
Q 012256 176 WLVDIYCHKVIRLSAATQEYAN--------------SIICNV-HGVNPKFLEIGKK----KKEQQQNG-----THAFAKG 231 (467)
Q Consensus 176 ~~~~~~~d~vi~~S~~~~~~~~--------------~~i~~i-~gvd~~~~~~~~~----~~~~~~~~-----~~~~~~~ 231 (467)
. ....||.++++|+...+... .++.++ ||+|...|.+... ........ ..++.++
T Consensus 186 ~-~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 264 (499)
T 2r60_A 186 L-TMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPA 264 (499)
T ss_dssp H-HHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCE
T ss_pred H-HHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcE
Confidence 2 22337999999977654321 233344 7999888876432 11111211 2334678
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhhcCC-eEEEEEec--CC----------C---HHHHHHHHHhcCC--eeEEecCCC
Q 012256 232 AYYIGKMVWSKGYKELLELLDDHQKELAG-LEVDLYGN--GE----------D---FNQIQEAAEKLKI--VVRVYPGRD 293 (467)
Q Consensus 232 il~vGrl~~~Kg~~~li~a~~~l~~~~~~-~~l~i~G~--g~----------~---~~~l~~~~~~~~~--~v~~~g~~~ 293 (467)
|+|+||+.+.||++.+++|+..+.++.++ ++++|+|+ |+ + .++++++++++++ +|.|+|.++
T Consensus 265 i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~ 344 (499)
T 2r60_A 265 IIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNS 344 (499)
T ss_dssp EEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCS
T ss_pred EEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCC
Confidence 99999999999999999999999876554 58999998 44 1 6788899988876 699999998
Q ss_pred CHH--HHHHhc----CeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 294 HAD--LIFHDY----KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 294 ~~~--~~~~~a----dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
+.+ ++|+.| |++|+||..|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.+++++
T Consensus 345 ~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~ 424 (499)
T 2r60_A 345 QQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFES 424 (499)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhC
Confidence 777 999999 999999999999999999999999999999976 58999988999987 999999999999987
Q ss_pred CCC--CccHHHH----HcCCHHHHHHHHHHHHhcccc
Q 012256 365 EPA--LPTEAQR----HQLSWESATERFLQVAELDQA 395 (467)
Q Consensus 365 ~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~~ 395 (467)
+.. .++++++ ++|||+.++++++++|+....
T Consensus 425 ~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~ 461 (499)
T 2r60_A 425 EETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIAD 461 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 654 4554443 569999999999999986543
No 7
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.2e-35 Score=296.93 Aligned_cols=269 Identities=16% Similarity=0.210 Sum_probs=204.2
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhcc-CCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTK-FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++.+||+||++.+....+.. .+.+. ..|++..+|+.++... ......+.+... ...+|.+
T Consensus 97 ~~l~~~l~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~-------~~~~~~~~~~~~--~~~~d~i 164 (406)
T 2gek_A 97 RKVKKWIAEGDFDVLHIHEPNAPSLSM---LALQAAEGPIVATFHTSTTKSL-------TLSVFQGILRPY--HEKIIGR 164 (406)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSSHHH---HHHHHEESSEEEEECCCCCSHH-------HHHHHHSTTHHH--HTTCSEE
T ss_pred HHHHHHHHhcCCCEEEECCccchHHHH---HHHHhcCCCEEEEEcCcchhhh-------hHHHHHHHHHHH--HhhCCEE
Confidence 346666777899999998766544321 22222 2489999998654322 111222222221 2237999
Q ss_pred EEcCHhhHHhh-----hcccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEecc-ccccCHHHHHHHHHHHHhhc
Q 012256 186 IRLSAATQEYA-----NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKM-VWSKGYKELLELLDDHQKEL 258 (467)
Q Consensus 186 i~~S~~~~~~~-----~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl-~~~Kg~~~li~a~~~l~~~~ 258 (467)
+++|+...+.. ...+ .+ +|+|...+.+...... ...+++.++|+|++ .+.||++.+++++..+.++.
T Consensus 165 i~~s~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~~~~~-----~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~ 238 (406)
T 2gek_A 165 IAVSDLARRWQMEALGSDAV-EIPNGVDVASFADAPLLDG-----YPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARF 238 (406)
T ss_dssp EESSHHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCCCCTT-----CSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTS
T ss_pred EECCHHHHHHHHHhcCCCcE-EecCCCChhhcCCCchhhh-----ccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHC
Confidence 99997755433 2344 44 7888766654332110 11235799999999 99999999999999999888
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCC-CCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 259 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~-~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
++++|+|+|+|++ +.+++.++++..++.++|.+++.+ ++|+.||++|+||. .|++|++++||||||+|||+++.|+
T Consensus 239 ~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~ 317 (406)
T 2gek_A 239 PDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDA 317 (406)
T ss_dssp TTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHH
T ss_pred CCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCCc
Confidence 9999999999988 888888877655899999999886 99999999999996 9999999999999999999999966
Q ss_pred -ccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhccc
Q 012256 336 -NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 336 -~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~~ 394 (467)
.|++.++.+|++++ |+++++++|.++++++.. .++++++ ..|||+.+++++.++|+...
T Consensus 318 ~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 384 (406)
T 2gek_A 318 FRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVS 384 (406)
T ss_dssp HHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 58999889999986 999999999999997654 4444433 58999999999999999544
No 8
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.1e-35 Score=288.83 Aligned_cols=243 Identities=13% Similarity=-0.018 Sum_probs=193.6
Q ss_pred hhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEE
Q 012256 108 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 187 (467)
Q Consensus 108 ~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 187 (467)
.+.+.+++.+||+||++.+....+. ......| +.++|+...... .+|.+++
T Consensus 75 ~l~~~l~~~~~Dvi~~~~~~~~~~~-----~~~~~~p-v~~~h~~~~~~~-----------------------~~d~ii~ 125 (342)
T 2iuy_A 75 EIERWLRTADVDVVHDHSGGVIGPA-----GLPPGTA-FISSHHFTTRPV-----------------------NPVGCTY 125 (342)
T ss_dssp HHHHHHHHCCCSEEEECSSSSSCST-----TCCTTCE-EEEEECSSSBCS-----------------------CCTTEEE
T ss_pred HHHHHHHhcCCCEEEECCchhhHHH-----HhhcCCC-EEEecCCCCCcc-----------------------cceEEEE
Confidence 4666777789999999876543222 1112238 999998754211 0699999
Q ss_pred cCHhhHHhhh--cccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEE
Q 012256 188 LSAATQEYAN--SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD 264 (467)
Q Consensus 188 ~S~~~~~~~~--~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~ 264 (467)
+|+..++... .++.++ ||+|.+.+.+.... .++.+.++|+||+.+.||++.+++++..+ +++|+
T Consensus 126 ~S~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~--------~~~~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~ 192 (342)
T 2iuy_A 126 SSRAQRAHCGGGDDAPVIPIPVDPARYRSAADQ--------VAKEDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLV 192 (342)
T ss_dssp SCHHHHHHTTCCTTSCBCCCCBCGGGSCCSTTC--------CCCCSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEE
T ss_pred cCHHHHHHHhcCCceEEEcCCCChhhcCccccc--------CCCCCEEEEEeccccccCHHHHHHHHHhc-----CcEEE
Confidence 9988775554 334444 79998777654321 12355899999999999999999999876 78999
Q ss_pred EEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCC----------CCCCcHHHHHHHHcCCeEEEeC
Q 012256 265 LYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST----------TDVVCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 265 i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~----------~e~~~~~~lEAma~G~PVV~t~ 332 (467)
|+|+|++.+.+++++++++.+++|+|.+++.+ ++|+.||++|+||. .|++|++++||||||+|||+|+
T Consensus 193 i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~ 272 (342)
T 2iuy_A 193 LAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTG 272 (342)
T ss_dssp EESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECC
T ss_pred EEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcC
Confidence 99999999999999888877899999999886 99999999999999 8999999999999999999999
Q ss_pred CCC-cccccc--CCCEEeeC-CHHHHHHHHHHHHhcCCCCccHHHHHcCCHHHHHHHHHHHHhccc
Q 012256 333 HPS-NDFFKQ--FPNCRTYD-DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 333 ~g~-~e~v~~--~~~g~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~ 394 (467)
.|+ .|++.+ +.+|++++ |+++++++|.++++ .....+...++|||+.+++++.++|+...
T Consensus 273 ~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 273 NGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA--SDEVRRAAVRLWGHVTIAERYVEQYRRLL 336 (342)
T ss_dssp TTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC--HHHHHHHHHHHHBHHHHHHHHHHHHHHHH
T ss_pred CCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 976 589988 88999999 99999999999876 11111123378999999999999998554
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.6e-34 Score=296.26 Aligned_cols=210 Identities=17% Similarity=0.175 Sum_probs=167.6
Q ss_pred cCEEEEcCHhhHHhhh------------------cccccc-cccCCCccccchh------------------hHHHh-hc
Q 012256 182 CHKVIRLSAATQEYAN------------------SIICNV-HGVNPKFLEIGKK------------------KKEQQ-QN 223 (467)
Q Consensus 182 ~d~vi~~S~~~~~~~~------------------~~i~~i-~gvd~~~~~~~~~------------------~~~~~-~~ 223 (467)
+|.++++|+...+... .++.++ ||+|.+.|.+... ....+ ..
T Consensus 205 ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 284 (485)
T 2qzs_A 205 ADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAM 284 (485)
T ss_dssp CSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHH
T ss_pred cCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHc
Confidence 6999999977554321 344445 8999888876432 11122 22
Q ss_pred CCCC--CCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCC--CHHHHHHHHHhcCCeeE-EecCCCCHH--
Q 012256 224 GTHA--FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLKIVVR-VYPGRDHAD-- 296 (467)
Q Consensus 224 ~~~~--~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~-~~g~~~~~~-- 296 (467)
..++ +.+.++|+||+.+.||++.+++|+..+.+ ++++|+|+|+|+ ..+.+++++++++.++. +.|. ++.+
T Consensus 285 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~ 361 (485)
T 2qzs_A 285 GLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGY-HEAFSH 361 (485)
T ss_dssp TCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESC-CHHHHH
T ss_pred CCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCC-CHHHHH
Confidence 2222 56899999999999999999999999976 489999999986 36778888888876787 4566 5544
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccC---------CCEEeeC--CHHHHHHHHHHHH--
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVEATLKAL-- 362 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~---------~~g~~~~--~~~~l~~~i~~~l-- 362 (467)
++|+.||++|+||..|+||++++||||||+|||+|+.|+ .|++.++ .+|++++ |+++++++|.+++
T Consensus 362 ~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~ 441 (485)
T 2qzs_A 362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVL 441 (485)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999966 5899988 8999988 9999999999999
Q ss_pred -hcCCC--CccHHHH-HcCCHHHHHHHHHHHHhccc
Q 012256 363 -AEEPA--LPTEAQR-HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 363 -~~~~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 394 (467)
+++.. .++++++ +.|||+.++++++++|+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ly~~~~ 477 (485)
T 2qzs_A 442 WSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477 (485)
T ss_dssp HTSHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Confidence 45433 4555544 78999999999999998554
No 10
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=4.6e-34 Score=303.81 Aligned_cols=273 Identities=10% Similarity=0.099 Sum_probs=196.8
Q ss_pred CCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHH--H----HHH-HHHHhhhhhcCEEE
Q 012256 115 DEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAF--L----LKY-ANSWLVDIYCHKVI 186 (467)
Q Consensus 115 ~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~--~----~~~-~~~~~~~~~~d~vi 186 (467)
..+|||||++... .++. +..+.+..+ |++.+.|+........... .+... . .+. .+.. ....||.||
T Consensus 405 ~~~PDVIHsH~~~-sglv--a~llar~~gvP~V~T~Hsl~~~k~~~~~~-~~~~~~~~y~~~~r~~aE~~-~l~~AD~VI 479 (816)
T 3s28_A 405 NGKPDLIIGNYSD-GNLV--ASLLAHKLGVTQCTIAHALEKTKYPDSDI-YWKKLDDKYHFSCQFTADIF-AMNHTDFII 479 (816)
T ss_dssp SSCCSEEEEEHHH-HHHH--HHHHHHHHTCCEEEECSCCHHHHSTTTTT-THHHHHHHHCHHHHHHHHHH-HHHHSSEEE
T ss_pred CCCCeEEEeCCch-HHHH--HHHHHHHcCCCEEEEEecccccccccccc-hhhhHHHHHHHHHHHHHHHH-HHHhCCEEE
Confidence 3579999997422 2222 223444445 9999999875432211110 01111 0 111 1111 233489999
Q ss_pred EcCHhhHH--------hhhc--------------------ccccc-cccCCCccccchhhHHH-----------------
Q 012256 187 RLSAATQE--------YANS--------------------IICNV-HGVNPKFLEIGKKKKEQ----------------- 220 (467)
Q Consensus 187 ~~S~~~~~--------~~~~--------------------~i~~i-~gvd~~~~~~~~~~~~~----------------- 220 (467)
++|....+ +... ++.++ +|||.+.|.|.......
T Consensus 480 a~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~ 559 (816)
T 3s28_A 480 TSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVE 559 (816)
T ss_dssp ESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCC
T ss_pred ECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhh
Confidence 99966443 1110 44444 79999888765422110
Q ss_pred --hhc--CCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCC-----------CHHHHHHHHHhcCC-
Q 012256 221 --QQN--GTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE-----------DFNQIQEAAEKLKI- 284 (467)
Q Consensus 221 --~~~--~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~-----------~~~~l~~~~~~~~~- 284 (467)
... ...+++++|+|+||+.+.||++.+++|+..+++..++++|+|+|+|+ ..+.++++++++++
T Consensus 560 ~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~ 639 (816)
T 3s28_A 560 NKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLN 639 (816)
T ss_dssp BTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCC
Confidence 011 12456789999999999999999999999998877899999999998 45678888888886
Q ss_pred -eeEEecCCCC----HH--HHHH-hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC--CHHH
Q 012256 285 -VVRVYPGRDH----AD--LIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNG 353 (467)
Q Consensus 285 -~v~~~g~~~~----~~--~~~~-~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~--~~~~ 353 (467)
+|.|+|.+++ .+ .+|. .+|+||+||.+|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++
T Consensus 640 ~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~ 719 (816)
T 3s28_A 640 GQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQ 719 (816)
T ss_dssp BBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHH
T ss_pred CcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHH
Confidence 7889997654 33 6666 57999999999999999999999999999999977 59999999999998 9999
Q ss_pred HHHHHHHHH----hcCCC--CccHHHH----HcCCHHHHHHHHHHHHhc
Q 012256 354 FVEATLKAL----AEEPA--LPTEAQR----HQLSWESATERFLQVAEL 392 (467)
Q Consensus 354 l~~~i~~~l----~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~ 392 (467)
++++|.+++ .++.. .++++++ ++|||+.++++++++|+.
T Consensus 720 LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~ 768 (816)
T 3s28_A 720 AADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGV 768 (816)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999998777 66544 4555443 789999999999999984
No 11
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.8e-34 Score=295.78 Aligned_cols=278 Identities=14% Similarity=0.120 Sum_probs=195.3
Q ss_pred hhccC-CCCCCCEEEecCCccccchhhhhhhhc--cCC-cEEEEEecchHHH------HHhhccch--HH----HH--HH
Q 012256 109 ISEVI-PDEVADIAVLEEPEHLTWFHHGKRWKT--KFR-YVVGIVHTNYLEY------VKREKNGR--LQ----AF--LL 170 (467)
Q Consensus 109 l~~~l-~~~~~DvI~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~h~~~~~~------~~~~~~~~--~~----~~--~~ 170 (467)
+.+.+ ++.+|||||++.... .+. +..+.+ ..+ |++.++|+..... ......+. +. .. ..
T Consensus 121 ~~~~~~~~~~~DiIh~~~~~~-~~~--~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (485)
T 1rzu_A 121 IGAGVLPGWRPDMVHAHDWQA-AMT--PVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDV 197 (485)
T ss_dssp HHTTCSSSCCCSEEEEEHHHH-TTH--HHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEE
T ss_pred HHHHhccCCCCCEEEecccch-hHH--HHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccc
Confidence 34444 678999999986322 221 111222 134 9999999864211 00000000 00 00 00
Q ss_pred HHHHHHhhhhhcCEEEEcCHhhHHhh----------------hcccccc-cccCCCccccchh-----------------
Q 012256 171 KYANSWLVDIYCHKVIRLSAATQEYA----------------NSIICNV-HGVNPKFLEIGKK----------------- 216 (467)
Q Consensus 171 ~~~~~~~~~~~~d~vi~~S~~~~~~~----------------~~~i~~i-~gvd~~~~~~~~~----------------- 216 (467)
...... ...+|.++++|+...+.. ..++.++ ||+|.+.|.+...
T Consensus 198 ~~~~~~--~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (485)
T 1rzu_A 198 SFLKGG--LQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRAL 275 (485)
T ss_dssp EHHHHH--HHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHH
T ss_pred cHHHHH--HhhcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHH
Confidence 011111 122699999997765432 2334444 7999888876432
Q ss_pred -hHHHh-hcCCCC-CCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEE-ec
Q 012256 217 -KKEQQ-QNGTHA-FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRV-YP 290 (467)
Q Consensus 217 -~~~~~-~~~~~~-~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~-~g 290 (467)
....+ ....+. ..+.++|+||+.+.||++.+++|+..+.+ ++++|+|+|+|+. .+.+++++++++.++.+ .|
T Consensus 276 ~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g 353 (485)
T 1rzu_A 276 NKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIG 353 (485)
T ss_dssp HHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEES
T ss_pred hHHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecC
Confidence 11122 222222 25699999999999999999999999976 4899999999974 67788888888767874 56
Q ss_pred CCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccC---------CCEEeeC--CHHHHHH
Q 012256 291 GRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVE 356 (467)
Q Consensus 291 ~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~---------~~g~~~~--~~~~l~~ 356 (467)
. ++.+ ++|+.||++|+||..|+||++++||||||+|||+|+.|+ .|++.++ .+|++++ |++++++
T Consensus 354 ~-~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~ 432 (485)
T 1rzu_A 354 Y-NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQ 432 (485)
T ss_dssp C-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHH
T ss_pred C-CHHHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHH
Confidence 5 5554 899999999999999999999999999999999999966 5899988 8999988 9999999
Q ss_pred HHHHHH---hcCCC--CccHHHH-HcCCHHHHHHHHHHHHhccc
Q 012256 357 ATLKAL---AEEPA--LPTEAQR-HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 357 ~i~~~l---~~~~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 394 (467)
+|.+++ +++.. .++++++ ++|||+.++++++++|+...
T Consensus 433 ~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~~ 476 (485)
T 1rzu_A 433 AIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSAGLYAALYSQLI 476 (485)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhh
Confidence 999999 45433 4555555 68999999999999998554
No 12
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=3.9e-34 Score=294.91 Aligned_cols=210 Identities=17% Similarity=0.173 Sum_probs=165.0
Q ss_pred hcCEEEEcCHhhHH-hhh--------------cccccc-cccCCCccccchhh-------------------HHHhh-c-
Q 012256 181 YCHKVIRLSAATQE-YAN--------------SIICNV-HGVNPKFLEIGKKK-------------------KEQQQ-N- 223 (467)
Q Consensus 181 ~~d~vi~~S~~~~~-~~~--------------~~i~~i-~gvd~~~~~~~~~~-------------------~~~~~-~- 223 (467)
+||+|+++|+...+ +.. .++..| ||||.+.|.|.... ...+. .
T Consensus 241 ~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~g 320 (536)
T 3vue_A 241 EADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAG 320 (536)
T ss_dssp HCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTT
T ss_pred hccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcC
Confidence 47999999977553 221 234444 89998888763210 00111 1
Q ss_pred -CCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHH--HH
Q 012256 224 -GTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LI 298 (467)
Q Consensus 224 -~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~--~~ 298 (467)
...++.++|+|+||+.++||++.|++|+.++.++ +.+++|+|.|+. ...++.....++.++.+.+.++..+ .+
T Consensus 321 l~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 398 (536)
T 3vue_A 321 LPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398 (536)
T ss_dssp SCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHH
T ss_pred CCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHH
Confidence 1245678999999999999999999999999764 678889998765 3456667777777899999988777 89
Q ss_pred HHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEE----------eeC--CHHHHHHHHHHHHhcC
Q 012256 299 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCR----------TYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 299 ~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~----------~~~--~~~~l~~~i~~~l~~~ 365 (467)
|+.||+||+||.+|+||++++||||||+|||+|++|+ .|++.++.||+ +++ |+++++++|.++++..
T Consensus 399 ~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~ 478 (536)
T 3vue_A 399 MAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVV 478 (536)
T ss_dssp HHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999977 59999999998 555 8999999999988743
Q ss_pred CC----CccHHH-HHcCCHHHHHHHHHHHHhc
Q 012256 366 PA----LPTEAQ-RHQLSWESATERFLQVAEL 392 (467)
Q Consensus 366 ~~----~~~~~~-~~~~sw~~~~~~~~~~~~~ 392 (467)
.. .+.+++ .++|||++++++|+++|+.
T Consensus 479 ~~~~~~~~~~~am~~~fSW~~~A~~y~~ly~~ 510 (536)
T 3vue_A 479 GTPAYEEMVRNCMNQDLSWKGPAKNWENVLLG 510 (536)
T ss_dssp TSHHHHHHHHHHHHSCCSSHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22 233333 3679999999999999984
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.3e-33 Score=283.23 Aligned_cols=336 Identities=13% Similarity=0.002 Sum_probs=225.6
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCCCcccCCcch-hHHHHHHHHhhhc
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPENITFTSPKQ-HETYVRRWLEERT 81 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (467)
|| |+++++.+ |..||.+......+++|+++ ++|+++...-... ..+. .... ...... . .+
T Consensus 1 Mk---I~~v~~~~-p~~gG~~~~~~~l~~~L~~~--~~V~v~~~~~~g~---~~~~------~~~~~~~~~~~--~-~~- 61 (413)
T 3oy2_A 1 MK---LIIVGAHS-SVPSGYGRVMRAIVPRISKA--HEVIVFGIHAFGR---SVHA------NIEEFDAQTAE--H-VR- 61 (413)
T ss_dssp CE---EEEEEECT-TCCSHHHHHHHHHHHHHTTT--SEEEEEEESCCSC---CSCS------SSEEEEHHHHH--H-HT-
T ss_pred Ce---EEEecCCC-CCCCCHHHHHHHHHHHHHhc--CCeEEEeecCCCc---cccc------ccccCCccccc--c-cc-
Confidence 67 99999876 66677453444445999987 7888877642210 0111 1110 001000 0 00
Q ss_pred CCCCCccccccCCCccccceeccchhhhhccCCCCCCCEEEecCCccccchhhhhhhhc-c-CCcEEEEEecchHHHHHh
Q 012256 82 GFTSTFDIRFYPGKFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKT-K-FRYVVGIVHTNYLEYVKR 159 (467)
Q Consensus 82 ~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~h~~~~~~~~~ 159 (467)
... +. .+....+.+.+++.+||+||++.+..+.... ...+.+ . ..+.+...|........
T Consensus 62 ~~~--------~~--------~~~~~~l~~~l~~~~~Div~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (413)
T 3oy2_A 62 GLN--------EQ--------GFYYSGLSEFIDVHKPDIVMIYNDPIVIGNY-LLAMGKCSHRTKIVLYVDLVSKNIRE- 123 (413)
T ss_dssp TCC--------ST--------TCCHHHHHHHHHHHCCSEEEEEECHHHHHHH-HHHGGGCCSCCEEEEEECCCSBSCCG-
T ss_pred ccc--------cc--------cchHHHHHHHHHhcCCCEEEEcchHHHHHHH-HHHhccCCCCCceeeeccccchhhHH-
Confidence 000 00 0111235566677899999998433222111 111111 1 12445555554322111
Q ss_pred hccchHHHHHHHHHHHHhhhhhcC--EEEEcCHhhHHhhh-----cccccc-cccCCCccccchhhHHHhhcCCCC--CC
Q 012256 160 EKNGRLQAFLLKYANSWLVDIYCH--KVIRLSAATQEYAN-----SIICNV-HGVNPKFLEIGKKKKEQQQNGTHA--FA 229 (467)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~d--~vi~~S~~~~~~~~-----~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~--~~ 229 (467)
. +...+.+ +| .++++|+...+... .++.++ ||+|...|.. .......++ +.
T Consensus 124 --------~----~~~~~~~--~~~~~ii~~S~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~-----~~~~~~~~~~~~~ 184 (413)
T 3oy2_A 124 --------N----LWWIFSH--PKVVGVMAMSKCWISDICNYGCKVPINIVSHFVDTKTIYD-----ARKLVGLSEYNDD 184 (413)
T ss_dssp --------G----GGGGGGC--TTEEEEEESSTHHHHHHHHTTCCSCEEECCCCCCCCCCTT-----HHHHTTCGGGTTS
T ss_pred --------H----HHHHHhc--cCCceEEEcCHHHHHHHHHcCCCCceEEeCCCCCHHHHHH-----HHHhcCCCcccCc
Confidence 0 2222222 46 99999977654332 233334 7999887721 111122222 57
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCH------HHHHHHHHhcCCe---------eEEecCCCC
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDF------NQIQEAAEKLKIV---------VRVYPGRDH 294 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~------~~l~~~~~~~~~~---------v~~~g~~~~ 294 (467)
+.++|+||+.+.||++.+++|+..+.++.|+++|+|+|+|++. +.++++++++++. +.+.|.+++
T Consensus 185 ~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~ 264 (413)
T 3oy2_A 185 VLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTD 264 (413)
T ss_dssp EEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCH
T ss_pred eEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCH
Confidence 7999999999999999999999999988999999999999865 7888888888874 666688988
Q ss_pred HH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCC---------------EE--eeC--CHH
Q 012256 295 AD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPN---------------CR--TYD--DRN 352 (467)
Q Consensus 295 ~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~---------------g~--~~~--~~~ 352 (467)
.+ ++|+.||++|+||..|+||++++||||||+|||+|+.|+ .|++.++.+ |+ +++ |++
T Consensus 265 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~ 344 (413)
T 3oy2_A 265 ERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVD 344 (413)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHH
T ss_pred HHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHH
Confidence 77 999999999999999999999999999999999999966 588888777 77 776 999
Q ss_pred HHHHHHHHHHhcCCC--CccHHHH----HcCCHHHHHHHHHHHHhcccc
Q 012256 353 GFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELDQA 395 (467)
Q Consensus 353 ~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~~ 395 (467)
+++++| ++++++.. .++++++ ++|||+.++++++++|+....
T Consensus 345 ~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 392 (413)
T 3oy2_A 345 DLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLR 392 (413)
T ss_dssp HHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999 99987654 4555443 579999999999999996543
No 14
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1e-33 Score=279.80 Aligned_cols=211 Identities=16% Similarity=0.165 Sum_probs=170.2
Q ss_pred hcCEEEEcCHhhHHhhh-------cccccc-cccCCCccccchhh---HHHh-hcCCCCCCceEEEEeccccccCHHHHH
Q 012256 181 YCHKVIRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKK---KEQQ-QNGTHAFAKGAYYIGKMVWSKGYKELL 248 (467)
Q Consensus 181 ~~d~vi~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~---~~~~-~~~~~~~~~~il~vGrl~~~Kg~~~li 248 (467)
.+|.++++|+...+... .++..+ ||+|.+.|.+.... ...+ ....+++++.++|+|++.+.||++.++
T Consensus 136 ~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li 215 (374)
T 2iw1_A 136 KSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSI 215 (374)
T ss_dssp CCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHH
T ss_pred CCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHH
Confidence 48999999977554332 233344 79998877654321 1122 223345578999999999999999999
Q ss_pred HHHHHHHhh-cCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcC
Q 012256 249 ELLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 325 (467)
Q Consensus 249 ~a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G 325 (467)
+++..+.++ .++++|+|+|+|+. +.+++.++++++ +++|+|..++..++|+.||++|+||..|++|++++||||||
T Consensus 216 ~a~~~l~~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G 294 (374)
T 2iw1_A 216 EALASLPESLRHNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAG 294 (374)
T ss_dssp HHHHTSCHHHHHTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHT
T ss_pred HHHHHhHhccCCceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccccCCcccHHHHHHHCC
Confidence 999998766 57999999999875 778888888875 79999986665699999999999999999999999999999
Q ss_pred CeEEEeCCCC-ccccccCCCEEeeC---CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhc
Q 012256 326 KIVVCANHPS-NDFFKQFPNCRTYD---DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAEL 392 (467)
Q Consensus 326 ~PVV~t~~g~-~e~v~~~~~g~~~~---~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~ 392 (467)
+|||+|+.|+ .|++.++.+|++++ |+++++++|.+++++++. .++++++ ..++|+..++++.++++.
T Consensus 295 ~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 295 LPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITG 370 (374)
T ss_dssp CCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHC
T ss_pred CCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999966 68999988998885 999999999999997654 4555443 578999999999998874
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.98 E-value=5.7e-32 Score=270.71 Aligned_cols=186 Identities=10% Similarity=0.045 Sum_probs=142.0
Q ss_pred EEEEcCHhhHHhhhc-cc-----ccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEecc-ccccCHHHHHHHHHHHH
Q 012256 184 KVIRLSAATQEYANS-II-----CNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKM-VWSKGYKELLELLDDHQ 255 (467)
Q Consensus 184 ~vi~~S~~~~~~~~~-~i-----~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl-~~~Kg~~~li~a~~~l~ 255 (467)
.+|++|+.+++...+ ++ ..+ +|+|.+.|.+. . ...+..+.++|+||+ .++||++.+++|+..+.
T Consensus 197 ~vi~~S~~~~~~l~~~g~~~~~~~~i~~g~d~~~~~~~-------~-~~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~ 268 (413)
T 2x0d_A 197 IAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTLKNYI-------N-DKRQKEKIILVYGRPSVKRNAFTLIVEALKIFV 268 (413)
T ss_dssp EEEEESHHHHHHHHHHTCCCSEEEEECCCCCHHHHTTT-------T-SCCCCCSEEEEEECTTCGGGCHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHcCCCCCceEEeCCCcCchhhccc-------c-cccCCCCEEEEEecCchhccCHHHHHHHHHHHH
Confidence 689999887755432 11 122 56665443321 1 122335679999996 68999999999999998
Q ss_pred hhcCC---eEEEEEecCCCHHHHHHHHHhcC--CeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeE
Q 012256 256 KELAG---LEVDLYGNGEDFNQIQEAAEKLK--IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 328 (467)
Q Consensus 256 ~~~~~---~~l~i~G~g~~~~~l~~~~~~~~--~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PV 328 (467)
++.|+ ++|+|+|+|+... +++ .+++|+|.+++.+ ++|+.||+||+||.+|+||++++||||||+||
T Consensus 269 ~~~~~~~~~~l~ivG~~~~~~-------~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PV 341 (413)
T 2x0d_A 269 QKYDRSNEWKIISVGEKHKDI-------ALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRV 341 (413)
T ss_dssp HHCTTGGGCEEEEEESCCCCE-------EEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEE
T ss_pred HhCCCCCceEEEEEcCCchhh-------hcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcE
Confidence 87775 8999999987742 233 3788999998888 99999999999999999999999999999999
Q ss_pred EEeCCCCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCCccHHHH---HcCCHHHHHHH
Q 012256 329 VCANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALPTEAQR---HQLSWESATER 385 (467)
Q Consensus 329 V~t~~g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~~~~~~~---~~~sw~~~~~~ 385 (467)
|+++.|..|++.++.+|++++ |+++++++|.++++++..... +++ +.|||+++.++
T Consensus 342 V~~~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~-~~~~~~~~~~W~~~~~~ 402 (413)
T 2x0d_A 342 ITNKYENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDV-DKKESSNMMFYINEFNE 402 (413)
T ss_dssp EEECBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHHTC--------CCBSCGGGCCCC--
T ss_pred EEeCCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH-hHHHHHHhCCHHHHHHH
Confidence 996656679999999999887 999999999999998765322 333 57999999777
No 16
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.96 E-value=1.7e-29 Score=252.72 Aligned_cols=240 Identities=17% Similarity=0.205 Sum_probs=171.6
Q ss_pred CCCEEEecCCccccchhhhhhhhccC-CcEEEEEecchH-HHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhhHH
Q 012256 117 VADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYL-EYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 194 (467)
Q Consensus 117 ~~DvI~~~~~~~~~~~~~~~~~~~~~-~~~v~~~h~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 194 (467)
++|+||........+. .+.+.. .|++.++|+.+. .... .. ....+.....+ ..+|.++++|+...+
T Consensus 124 ~~DvIh~~~~~~~~~~----~~~~~~~~p~v~~~h~~~~~~~~~--~~----~~~~~~~~~~~--~~ad~vi~~S~~~~~ 191 (406)
T 2hy7_A 124 ESDVIVFESGIAVAFI----ELAKRVNPAAKLVYRASDGLSTIN--VA----SYIEREFDRVA--PTLDVIALVSPAMAA 191 (406)
T ss_dssp HCSEEEEESSGGGGGH----HHHHHHCTTSEEEEEESSCHHHHT--CC----HHHHHHHHHHG--GGCSEEEESCGGGGG
T ss_pred CCCEEEECCchHHHHH----HHHHHhCCCEEEEEeccchhhccc--cc----HHHHHHHHHHH--HhCCEEEEcCHHHHH
Confidence 6899994322211111 122222 388889997653 2221 11 12222222222 237999999988775
Q ss_pred hhhc--ccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 012256 195 YANS--IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED 271 (467)
Q Consensus 195 ~~~~--~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~ 271 (467)
...+ ++.++ ||+|.+.|.+.... ..+.++.++|+||+.+.||+ +..+.+..++++|+|+|+|+
T Consensus 192 ~~~~~~~i~vipngvd~~~f~~~~~~-------~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~- 257 (406)
T 2hy7_A 192 EVVSRDNVFHVGHGVDHNLDQLGDPS-------PYAEGIHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM- 257 (406)
T ss_dssp GCSCSTTEEECCCCBCTTHHHHHCSC-------SCCSSEEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS-
T ss_pred HHHhcCCEEEEcCCcChHhcCccccc-------ccCCCcEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch-
Confidence 5433 34444 89998777543211 11223789999999999999 34444557899999999987
Q ss_pred HHHHHHHHHhcC--CeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHH-------HcCCeEEEeCCCCccccc
Q 012256 272 FNQIQEAAEKLK--IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL-------AMGKIVVCANHPSNDFFK 340 (467)
Q Consensus 272 ~~~l~~~~~~~~--~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAm-------a~G~PVV~t~~g~~e~v~ 340 (467)
+++++ .+|+|+|.+++.+ ++|+.||+||+||..|++|++++||| |||+|||+|+. +.
T Consensus 258 -------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~-----v~ 325 (406)
T 2hy7_A 258 -------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA-----VV 325 (406)
T ss_dssp -------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG-----GT
T ss_pred -------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh-----cc
Confidence 23333 3799999998877 99999999999999999999999999 99999999987 66
Q ss_pred cCCCEEe-eC--CHHHHHHHHHHHHhcCCCCccHHHHHcCCHHHHHHHHHHH--HhccccccC
Q 012256 341 QFPNCRT-YD--DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQV--AELDQAVVK 398 (467)
Q Consensus 341 ~~~~g~~-~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~--~~~~~~~~~ 398 (467)
++.+|++ ++ |+++++++|.++++++.. ...++|||+.++++++++ |+.....+.
T Consensus 326 ~~~~G~l~v~~~d~~~la~ai~~ll~~~~~----~~~~~~sw~~~a~~~~~~~~y~~~~~~~~ 384 (406)
T 2hy7_A 326 GPYKSRFGYTPGNADSVIAAITQALEAPRV----RYRQCLNWSDTTDRVLDPRAYPETRLYPH 384 (406)
T ss_dssp CSCSSEEEECTTCHHHHHHHHHHHHHCCCC----CCSCCCBHHHHHHHHHCGGGSGGGBSSCC
T ss_pred cCcceEEEeCCCCHHHHHHHHHHHHhCcch----hhhhcCCHHHHHHHHHHhhcccccCcCCC
Confidence 7778988 76 999999999999998762 223689999999999999 886554433
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.94 E-value=2.3e-26 Score=226.46 Aligned_cols=250 Identities=12% Similarity=0.011 Sum_probs=174.3
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++.+||+||++.+..... +....+..+ |++...|+..+... .++ ....+|.+
T Consensus 86 ~~l~~~l~~~~pDvv~~~~~~~~~~---~~~~~~~~~~p~v~~~~~~~~~~~----------------~~~-~~~~~d~v 145 (364)
T 1f0k_A 86 RQARAIMKAYKPDVVLGMGGYVSGP---GGLAAWSLGIPVVLHEQNGIAGLT----------------NKW-LAKIATKV 145 (364)
T ss_dssp HHHHHHHHHHCCSEEEECSSTTHHH---HHHHHHHTTCCEEEEECSSSCCHH----------------HHH-HTTTCSEE
T ss_pred HHHHHHHHhcCCCEEEEeCCcCchH---HHHHHHHcCCCEEEEecCCCCcHH----------------HHH-HHHhCCEE
Confidence 3466777788999999986542211 112222234 88888887542111 112 12247999
Q ss_pred EEcCHhhHHhhhcccccc-cccCCCccccchhhHHHhhcCCCCCCce-EEEEeccccccCHHHHHHHHHHHHhhcCCeE-
Q 012256 186 IRLSAATQEYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKG-AYYIGKMVWSKGYKELLELLDDHQKELAGLE- 262 (467)
Q Consensus 186 i~~S~~~~~~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~-il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~- 262 (467)
++.++.. +. ++..+ ||++...+.+.... ......++.+. +++.|++.+.||.+.+++++..+.+ +++
T Consensus 146 ~~~~~~~--~~--~~~~i~n~v~~~~~~~~~~~---~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~ 215 (364)
T 1f0k_A 146 MQAFPGA--FP--NAEVVGNPVRTDVLALPLPQ---QRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTI 215 (364)
T ss_dssp EESSTTS--SS--SCEECCCCCCHHHHTSCCHH---HHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEE
T ss_pred EecChhh--cC--CceEeCCccchhhcccchhh---hhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEE
Confidence 9988653 22 33333 68887666543211 11112233444 4455689999999999999999864 677
Q ss_pred EEEEecCCCHHHHHHHHHhcCC-eeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc-c---
Q 012256 263 VDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-D--- 337 (467)
Q Consensus 263 l~i~G~g~~~~~l~~~~~~~~~-~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~-e--- 337 (467)
++++|+|+ .+.+++.++++++ +++|.|.+++..++|+.||++|+||. |++++||||||+|||+++.++. +
T Consensus 216 l~i~G~~~-~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~ 290 (364)
T 1f0k_A 216 WHQSGKGS-QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQY 290 (364)
T ss_dssp EEECCTTC-HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCCTTCHHH
T ss_pred EEEcCCch-HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCCchhHH
Confidence 57789887 4778888888775 79999999666699999999999983 9999999999999999999642 1
Q ss_pred ----ccccCCCEEeeC--C--HHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhcc
Q 012256 338 ----FFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 393 (467)
Q Consensus 338 ----~v~~~~~g~~~~--~--~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 393 (467)
.+.+...|++++ | +++++++|.++ ++.. .++++++ +.|+|++++++++++|+..
T Consensus 291 ~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 357 (364)
T 1f0k_A 291 WNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVSRVARAL 357 (364)
T ss_dssp HHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 344444599987 5 89999999997 4332 4555444 5799999999999999843
No 18
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.94 E-value=9.5e-27 Score=243.11 Aligned_cols=259 Identities=11% Similarity=0.002 Sum_probs=180.8
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
..+.+.+++.+|||||.......... ...+..+..|++.++|+... .. .. ..+....+|.++
T Consensus 272 ~~l~~~i~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~---~~------------~~~~~~~~d~~i 333 (568)
T 2vsy_A 272 LATAKHIRHHGIDLLFDLRGWGGGGR--PEVFALRPAPVQVNWLAYPG-TS---GA------------PWMDYVLGDAFA 333 (568)
T ss_dssp HHHHHHHHHTTCSEEEECSSCTTCSS--CHHHHTCCSSEEEEESSSSS-CC---CC------------TTCCEEEECTTT
T ss_pred HHHHHHHHhCCCCEEEECCCCCCcch--HHHHhcCCCceeEeeecCCc-cc---CC------------CCceEEEECCCc
Confidence 45677788899999997543221111 01122233477777776321 00 00 011223478888
Q ss_pred EcCHhhHHhhhcccccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEE
Q 012256 187 RLSAATQEYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL 265 (467)
Q Consensus 187 ~~S~~~~~~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 265 (467)
++|+....+. +++.++ |.+.+....+.......+.....+....++++|++.+ ||++.+++++..+.++.|+++|+|
T Consensus 334 ~~s~~~~~~~-~~i~~ipn~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i 411 (568)
T 2vsy_A 334 LPPALEPFYS-EHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWL 411 (568)
T ss_dssp SCTTTGGGCS-SEEEECSSCSCCCCTTCCCCCCCCTGGGTCCTTSCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCcccccCCc-ceeEcCCCcCCCCCCCCCCCCCCCccccCCCCCCEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEE
Confidence 8887655543 344333 3332211110001111112222223446779999999 999999999999988889999999
Q ss_pred Ee-cCCCHHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEE-------eC
Q 012256 266 YG-NGEDFNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC-------AN 332 (467)
Q Consensus 266 ~G-~g~~~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~-------t~ 332 (467)
+| +|+..+.+++.++++++ +|+|.|.+++.+ ++|+.+|+||+||.+ ++|++++||||||+|||+ |+
T Consensus 412 ~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~ 490 (568)
T 2vsy_A 412 LSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAAR 490 (568)
T ss_dssp ECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGS
T ss_pred ecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHH
Confidence 99 88888999999998876 489999998766 999999999999999 999999999999999999 88
Q ss_pred CC-------Cc-cccccCCCEEeeCCHHHHHHHHHHHHhcCCC--CccHHHH------HcCCHHHHHHHHHHHHhccc
Q 012256 333 HP-------SN-DFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR------HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 333 ~g-------~~-e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~------~~~sw~~~~~~~~~~~~~~~ 394 (467)
.| +. |++.+ |+++++++|.++++++.. .++++.+ ..|||+.++++++++|+...
T Consensus 491 ~~~~~l~~~g~~e~v~~--------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~ 560 (568)
T 2vsy_A 491 VAGSLNHHLGLDEMNVA--------DDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALA 560 (568)
T ss_dssp HHHHHHHHHTCGGGBCS--------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhhhcC--------CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 87 53 44433 899999999999998654 4544332 56999999999999998543
No 19
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=2.2e-26 Score=200.60 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=126.5
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v 306 (467)
++.++|+|++.++||++.+++++..+++ .++++|+|+|+|++.+.+++.+++++++++| |.+++.+ ++|+.||++|
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v 79 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKY-KQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYV 79 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTT-GGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhcc-CCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEE
Confidence 4689999999999999999999999854 4899999999999999999999999998888 9998777 9999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCC-eEEEeC-CCC-ccccccCCCEEeeCCHHHHHHHHHHHHhcCCC--CccHHHH---HcCC
Q 012256 307 NPSTTDVVCTTTAEALAMGK-IVVCAN-HPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR---HQLS 378 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~-PVV~t~-~g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~s 378 (467)
+||..|++|++++||||||+ |||+++ .|+ .+++.++.+.+...|+++++++|.++++++.. .++++++ ++||
T Consensus 80 ~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s 159 (166)
T 3qhp_A 80 HAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYT 159 (166)
T ss_dssp ECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGGEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred ECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCceEEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999998 999965 466 47777765522223999999999999997654 4444333 7899
Q ss_pred HHHHHHH
Q 012256 379 WESATER 385 (467)
Q Consensus 379 w~~~~~~ 385 (467)
|++++++
T Consensus 160 ~~~~~~~ 166 (166)
T 3qhp_A 160 LENSVIQ 166 (166)
T ss_dssp -------
T ss_pred hhhhhcC
Confidence 9988764
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.93 E-value=9.4e-26 Score=222.88 Aligned_cols=266 Identities=11% Similarity=0.040 Sum_probs=174.2
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++++||+||++.+....+. +....+..+ |++.+.|+... +. ....+.. ...+++ ....+|.+
T Consensus 85 ~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~~~~~~ip~v~~~~~~~~-~~---~~~~~~~---~~~~~~-~~~~~d~i 154 (375)
T 3beo_A 85 EGLDKVMKEAKPDIVLVHGDTTTTFI--ASLAAFYNQIPVGHVEAGLRT-WD---KYSPYPE---EMNRQL-TGVMADLH 154 (375)
T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHH--HHHHHHHTTCCEEEESCCCCC-SC---TTSSTTH---HHHHHH-HHHHCSEE
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHHCCCEEEEeccccc-cc---ccCCChh---HhhhhH-Hhhhhhee
Confidence 34667778889999999765333332 112223334 88866665411 00 0000111 111221 22237999
Q ss_pred EEcCHhhHHhh-h-----cccccc-cc-cCCCccccch-hhHHHhhcCCCCCCceEEEEeccccc-cCHHHHHHHHHHHH
Q 012256 186 IRLSAATQEYA-N-----SIICNV-HG-VNPKFLEIGK-KKKEQQQNGTHAFAKGAYYIGKMVWS-KGYKELLELLDDHQ 255 (467)
Q Consensus 186 i~~S~~~~~~~-~-----~~i~~i-~g-vd~~~~~~~~-~~~~~~~~~~~~~~~~il~vGrl~~~-Kg~~~li~a~~~l~ 255 (467)
+++|+...+.. + +++.++ || +|...+.+.. .....+... .+.+.+++++||+.+. ||++.+++|+..+.
T Consensus 155 i~~s~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~-~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~ 233 (375)
T 3beo_A 155 FSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKL-GNNRLVLMTAHRRENLGEPMRNMFRAIKRLV 233 (375)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT-TTSEEEEEECCCGGGTTHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHcCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc-cCCCeEEEEecccccchhHHHHHHHHHHHHH
Confidence 99997765433 2 233333 56 6654443321 111111222 2334567899999875 99999999999998
Q ss_pred hhcCCeEEEEEecCCCHHHHHHHHHhc-C--CeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEE
Q 012256 256 KELAGLEVDLYGNGEDFNQIQEAAEKL-K--IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 330 (467)
Q Consensus 256 ~~~~~~~l~i~G~g~~~~~l~~~~~~~-~--~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~ 330 (467)
++.|+++++ +|.|++ ..+++.++++ + .++.|.|.+.+.+ ++|+.||++|+|| |.+++||||||+|||+
T Consensus 234 ~~~~~~~~i-~~~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~ 306 (375)
T 3beo_A 234 DKHEDVQVV-YPVHMN-PVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLV 306 (375)
T ss_dssp HHCTTEEEE-EECCSC-HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEE
T ss_pred hhCCCeEEE-EeCCCC-HHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEE
Confidence 878899855 476765 2333333332 2 3799999887767 9999999999998 7779999999999999
Q ss_pred eCC-CC-ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHh
Q 012256 331 ANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 391 (467)
Q Consensus 331 t~~-g~-~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 391 (467)
++. |+ .|++.++ +|++++ |+++++++|.+++++++. .|+++++ ..|+|+.+++++.+.++
T Consensus 307 ~~~~~~~~e~v~~g-~g~~v~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 307 LRDTTERPEGIEAG-TLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp CSSCCSCHHHHHTT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred ecCCCCCceeecCC-ceEEcCCCHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 975 66 4777777 999996 999999999999997643 3333222 57999999999998775
No 21
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.93 E-value=1.7e-25 Score=201.15 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=139.7
Q ss_pred cccCCCccc--cchh-----hHHHhhcCCCCCCceEEEEeccc-cccCHHHHHHHHHHHH--hhcCCeEEEEEecCC--C
Q 012256 204 HGVNPKFLE--IGKK-----KKEQQQNGTHAFAKGAYYIGKMV-WSKGYKELLELLDDHQ--KELAGLEVDLYGNGE--D 271 (467)
Q Consensus 204 ~gvd~~~~~--~~~~-----~~~~~~~~~~~~~~~il~vGrl~-~~Kg~~~li~a~~~l~--~~~~~~~l~i~G~g~--~ 271 (467)
||||.+.|. +... ....+.....+..+.++|+|++. +.||++.+++++..+. ++.++++|+|+|+++ .
T Consensus 4 ngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~ 83 (200)
T 2bfw_A 4 NGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPEL 83 (200)
T ss_dssp -CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHH
T ss_pred CccChhhccccccccchhhHHHHHHHHcCCCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHH
Confidence 799999888 6542 22333333433456999999999 9999999999999997 777899999999998 7
Q ss_pred HHHHHHHHHhcCCeeEE-ecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEe
Q 012256 272 FNQIQEAAEKLKIVVRV-YPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRT 347 (467)
Q Consensus 272 ~~~l~~~~~~~~~~v~~-~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~ 347 (467)
.+.+++.+++++ ++++ +|.+++.+ ++|+.||++|+||..|++|++++||||||+|||+++.++ .+++ ++.+|++
T Consensus 84 ~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~ 161 (200)
T 2bfw_A 84 EGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGIL 161 (200)
T ss_dssp HHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEE
T ss_pred HHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEE
Confidence 788999999888 9999 99998777 999999999999999999999999999999999999966 5888 8889999
Q ss_pred eC--CHHHHHHHHHHHHh-cCCC
Q 012256 348 YD--DRNGFVEATLKALA-EEPA 367 (467)
Q Consensus 348 ~~--~~~~l~~~i~~~l~-~~~~ 367 (467)
++ |+++++++|.++++ ++..
T Consensus 162 ~~~~~~~~l~~~i~~l~~~~~~~ 184 (200)
T 2bfw_A 162 VKAGDPGELANAILKALELSRSD 184 (200)
T ss_dssp ECTTCHHHHHHHHHHHHHCCHHH
T ss_pred ecCCCHHHHHHHHHHHHhcCHHH
Confidence 88 99999999999998 7543
No 22
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.92 E-value=1.7e-24 Score=219.44 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=141.5
Q ss_pred cccCCCccccchh------hHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCC----eEEEEEec-----
Q 012256 204 HGVNPKFLEIGKK------KKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN----- 268 (467)
Q Consensus 204 ~gvd~~~~~~~~~------~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~----- 268 (467)
+|||++.|.+... ....+.... ++++|+++||+++.||++.+|+|++.+.+++|+ ++|+++|+
T Consensus 226 ~GID~~~f~~~~~~~~~~~~~~lr~~~~--~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~ 303 (482)
T 1uqt_A 226 IGIEPKEIAKQAAGPLPPKLAQLKAELK--NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGD 303 (482)
T ss_dssp CCCCHHHHHHHHHSCCCHHHHHHHHHTT--TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTT
T ss_pred ccCCHHHHHHHhcCcchHHHHHHHHHhC--CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccc
Confidence 7999877754211 112223332 477999999999999999999999999877764 78999995
Q ss_pred CCCH----HHHHHHHHhcC----C----eeEEe-cCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCC-----eE
Q 012256 269 GEDF----NQIQEAAEKLK----I----VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-----IV 328 (467)
Q Consensus 269 g~~~----~~l~~~~~~~~----~----~v~~~-g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~-----PV 328 (467)
+++. +++++++.+++ . .+.++ |.++..+ ++|+.||+||+||..||||++++||||||+ ||
T Consensus 304 ~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpv 383 (482)
T 1uqt_A 304 VQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVL 383 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEE
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCE
Confidence 3322 33444444322 1 36665 7778777 999999999999999999999999999997 99
Q ss_pred EEeCC-CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCC---CccHHHH---HcCCHHHHHHHHHHHHhcc
Q 012256 329 VCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTEAQR---HQLSWESATERFLQVAELD 393 (467)
Q Consensus 329 V~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~~~~---~~~sw~~~~~~~~~~~~~~ 393 (467)
|+|+. |..+.+. +|++++ |+++++++|.+++++++. .+.++.+ ..|||+..++++++.|+.+
T Consensus 384 V~S~~~G~~~~l~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 384 VLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp EEETTBGGGGTCT---TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred EEECCCCCHHHhC---CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99998 5567773 678887 999999999999987543 2333222 5799999999999999855
No 23
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.92 E-value=2e-25 Score=221.33 Aligned_cols=270 Identities=11% Similarity=0.003 Sum_probs=175.8
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++++||+||++......+. +....+..+ |++.+.|+... +.. ... +.... .+......+|.+
T Consensus 76 ~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~a~~~~ip~v~~~~~~~~-~~~--~~~-~~~~~----~~~~~~~~~d~i 145 (384)
T 1vgv_A 76 EGLKPILAEFKPDVVLVHGDTTTTLA--TSLAAFYQRIPVGHVEAGLRT-GDL--YSP-WPEEA----NRTLTGHLAMYH 145 (384)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHHH--HHHHHHTTTCCEEEESCCCCC-SCT--TSS-TTHHH----HHHHHHTTCSEE
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHHCCCEEEEeccccc-ccc--cCC-CchHh----hHHHHHhhccEE
Confidence 45677788889999999865333332 122233334 88877776421 100 001 11111 111112237999
Q ss_pred EEcCHhhHHhhh------cccccc-ccc-CCCccccchh------hHHHhhcCC---CCCCceEEEEeccccc-cCHHHH
Q 012256 186 IRLSAATQEYAN------SIICNV-HGV-NPKFLEIGKK------KKEQQQNGT---HAFAKGAYYIGKMVWS-KGYKEL 247 (467)
Q Consensus 186 i~~S~~~~~~~~------~~i~~i-~gv-d~~~~~~~~~------~~~~~~~~~---~~~~~~il~vGrl~~~-Kg~~~l 247 (467)
+++|+...+... +++..+ ||+ |...+.+... ....+.... .+.+.+++++||+.+. ||++.+
T Consensus 146 i~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~l 225 (384)
T 1vgv_A 146 FSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEI 225 (384)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHH
T ss_pred EcCcHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHH
Confidence 999977654332 223333 553 3221111100 011122221 2234578899999876 999999
Q ss_pred HHHHHHHHhhcCCeEEEEE-ecCC-CHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHH
Q 012256 248 LELLDDHQKELAGLEVDLY-GNGE-DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALA 323 (467)
Q Consensus 248 i~a~~~l~~~~~~~~l~i~-G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma 323 (467)
++|+..+.++.|+++++++ |+++ ..+.+++.+... .++.|.|.+...+ ++|+.||+||.|| |.+++||||
T Consensus 226 i~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a 299 (384)
T 1vgv_A 226 CHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHV-KNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPS 299 (384)
T ss_dssp HHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGG
T ss_pred HHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcC-CCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHH
Confidence 9999999888889999886 5443 344555554322 3799988887766 9999999999999 444899999
Q ss_pred cCCeEEEeCC-CC-ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHhcc
Q 012256 324 MGKIVVCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 393 (467)
Q Consensus 324 ~G~PVV~t~~-g~-~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 393 (467)
||+|||+++. |+ .+++.++ +|++++ |+++++++|.+++++++. .|+++++ ..|+|+.+++.+.+.|+..
T Consensus 300 ~G~PvI~~~~~~~~~e~v~~g-~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 376 (384)
T 1vgv_A 300 LGKPVLVMRDTTERPEAVTAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL 376 (384)
T ss_dssp GTCCEEEESSCCSCHHHHHHT-SEEEECSSHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC
T ss_pred cCCCEEEccCCCCcchhhhCC-ceEEeCCCHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhh
Confidence 9999999987 66 4788777 999997 999999999999997643 3332222 5799999999999988744
No 24
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.90 E-value=2.5e-23 Score=183.41 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=123.5
Q ss_pred CCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHH--hcCC--eeEEecCCCCHH--HHH
Q 012256 226 HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAE--KLKI--VVRVYPGRDHAD--LIF 299 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~--~~~~--~v~~~g~~~~~~--~~~ 299 (467)
+.++++++|+|++.+.||++.+++++..+ ++++|+|+|++++.+.+++.++ ++++ +++++|.+++.+ ++|
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~ 95 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLY 95 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHH
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHH
Confidence 34567899999999999999999999886 6899999999988777888777 5444 799999999977 999
Q ss_pred HhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC
Q 012256 300 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 300 ~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~ 367 (467)
+.||++|+||..|++|++++||||||+|||+++.|+ .+++.++.+|++++ |+++++++|.++++++..
T Consensus 96 ~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 96 SRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp HHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTTT
T ss_pred HhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCHHH
Confidence 999999999999999999999999999999999966 58999888998875 999999999999998763
No 25
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.89 E-value=5.6e-22 Score=202.27 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=77.6
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-ccccccC-------CCEEeeC-----CHHHHHHHHHHHHh
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF-------PNCRTYD-----DRNGFVEATLKALA 363 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~~-------~~g~~~~-----~~~~l~~~i~~~l~ 363 (467)
++|+.||+||+||++|+||++++||||||+|||+|+.|+ .+.+.++ .+|+++. |+++++++|.+++.
T Consensus 514 ~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~ 593 (725)
T 3nb0_A 514 EFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYME 593 (725)
T ss_dssp HHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999977 5777765 3687662 67777777666664
Q ss_pred ----cCCC---CccHHHH---HcCCHHHHHHHHHHHHhccc
Q 012256 364 ----EEPA---LPTEAQR---HQLSWESATERFLQVAELDQ 394 (467)
Q Consensus 364 ----~~~~---~~~~~~~---~~~sw~~~~~~~~~~~~~~~ 394 (467)
.++. .++.+++ +.|||++++++|+++|+.+.
T Consensus 594 ~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL 634 (725)
T 3nb0_A 594 EFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLAL 634 (725)
T ss_dssp HHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2322 3343332 67999999999999998654
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.88 E-value=1.5e-21 Score=195.80 Aligned_cols=266 Identities=12% Similarity=0.063 Sum_probs=179.2
Q ss_pred CCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccch-HHHHHHHHHHHHhhhhhcCEEEEcCHh-hH
Q 012256 116 EVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGR-LQAFLLKYANSWLVDIYCHKVIRLSAA-TQ 193 (467)
Q Consensus 116 ~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~ 193 (467)
..-|+|++++...+......+... ...++..++|..+|..--....+. +...+.+.+ ..||.|..-+.. .+
T Consensus 148 ~~~D~VwVhDYhL~llp~~lR~~~-~~~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gl------l~~DligF~t~~y~~ 220 (496)
T 3t5t_A 148 SADPVYLVHDYQLVGVPALLREQR-PDAPILLFVHIPWPSADYWRILPKEIRTGILHGM------LPATTIGFFADRWCR 220 (496)
T ss_dssp CSSCEEEEESGGGTTHHHHHHHHC-TTSCEEEECCSCCCCHHHHTTSCHHHHHHHHHHH------TTSSEEEESSHHHHH
T ss_pred CCCCEEEEeCccHhHHHHHHHhhC-CCCeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHH------HhCCEEEEecHHHHH
Confidence 356899999876665543111111 223889999998875554334442 222222222 225888888753 22
Q ss_pred Hh-------h-h-----c-----------ccccc-cccCCCccccchhh--HHHhhcCCCCCCceEEEEeccccccCHHH
Q 012256 194 EY-------A-N-----S-----------IICNV-HGVNPKFLEIGKKK--KEQQQNGTHAFAKGAYYIGKMVWSKGYKE 246 (467)
Q Consensus 194 ~~-------~-~-----~-----------~i~~i-~gvd~~~~~~~~~~--~~~~~~~~~~~~~~il~vGrl~~~Kg~~~ 246 (467)
.+ . . . ++..+ +|||+..|.+.... ...+.... ++++|+++||+++.||++.
T Consensus 221 ~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~--~~~lIl~VgRLd~~KGi~~ 298 (496)
T 3t5t_A 221 NFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD--GHRLVVHSGRTDPIKNAER 298 (496)
T ss_dssp HHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT--TSEEEEEEEESSGGGCHHH
T ss_pred HHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC--CceEEEEcccCccccCHHH
Confidence 21 1 0 0 11122 69999888764321 11222222 4789999999999999999
Q ss_pred HHHHHHHHHhhcCC---eEEEEEe-----cCCCHHH----HHHHHHhcC----C-eeEEecCCCCHH--HHHHhcCeEEe
Q 012256 247 LLELLDDHQKELAG---LEVDLYG-----NGEDFNQ----IQEAAEKLK----I-VVRVYPGRDHAD--LIFHDYKVFLN 307 (467)
Q Consensus 247 li~a~~~l~~~~~~---~~l~i~G-----~g~~~~~----l~~~~~~~~----~-~v~~~g~~~~~~--~~~~~adv~v~ 307 (467)
+|+|+ ++.+++|+ +.|+++| ++++..+ +++++.+.+ . .|.|+|.+++.+ .+|+.||+||+
T Consensus 299 lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv 377 (496)
T 3t5t_A 299 AVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIF 377 (496)
T ss_dssp HHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEE
T ss_pred HHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEE
Confidence 99999 88877786 5688886 3333333 444444332 2 588889888877 99999999999
Q ss_pred cCCCCCCcHHHHHHHHcC---CeEEEeCC-CCccccccCCCEEeeC--CHHHHHHHHHHHHhcCCCC---ccH---HHHH
Q 012256 308 PSTTDVVCTTTAEALAMG---KIVVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPAL---PTE---AQRH 375 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G---~PVV~t~~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~---~~~---~~~~ 375 (467)
||..||||++.+|||||| .|+|.|+. |..+.+.+ +|++++ |+++++++|.++|++++.. +.+ +...
T Consensus 378 ~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~~--~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~ 455 (496)
T 3t5t_A 378 NSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLGE--YCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAAR 455 (496)
T ss_dssp CCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHGG--GSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred CcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhCC--CEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999997 89999999 55677743 578887 9999999999999987542 111 2226
Q ss_pred cCCHHHHHHHHHHHHhcc
Q 012256 376 QLSWESATERFLQVAELD 393 (467)
Q Consensus 376 ~~sw~~~~~~~~~~~~~~ 393 (467)
.+++..-++.+++..+..
T Consensus 456 ~~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 456 PWTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp TCBHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHhhc
Confidence 788888888888877644
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.88 E-value=1.3e-22 Score=200.68 Aligned_cols=265 Identities=9% Similarity=-0.059 Sum_probs=165.1
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
..+.+.+++++||+||++......+. +....+..+ |++. +|+....+.. ..+...... +++ ....+|.+
T Consensus 81 ~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~a~~~~ip~v~-~~~~~~~~~~--~~~~~~~~~----~~~-~~~~~~~~ 150 (376)
T 1v4v_A 81 PQAARALKEMGADYVLVHGDTLTTFA--VAWAAFLEGIPVGH-VEAGLRSGNL--KEPFPEEAN----RRL-TDVLTDLD 150 (376)
T ss_dssp HHHHHHHHHTTCSEEEEESSCHHHHH--HHHHHHHTTCCEEE-ETCCCCCSCT--TSSTTHHHH----HHH-HHHHCSEE
T ss_pred HHHHHHHHHcCCCEEEEeCChHHHHH--HHHHHHHhCCCEEE-EeCCCccccc--cCCCchHHH----HHH-HHHHhcee
Confidence 35667778899999999765433333 122333334 7764 3332211100 000011111 222 22337999
Q ss_pred EEcCHhhHHhh-hcc-----cccc-cc-cCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhh
Q 012256 186 IRLSAATQEYA-NSI-----ICNV-HG-VNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 257 (467)
Q Consensus 186 i~~S~~~~~~~-~~~-----i~~i-~g-vd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~ 257 (467)
+++|+...+.. +.+ +..+ |+ +|...+.+. ....+... .+.+.+++++||+...||++.+++|+..+.++
T Consensus 151 ~~~s~~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~~~--~~~~~~~~-~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~ 227 (376)
T 1v4v_A 151 FAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAK--LGRLPEGL-PEGPYVTVTMHRRENWPLLSDLAQALKRVAEA 227 (376)
T ss_dssp EESSHHHHHHHHTTTCCGGGEEECCCHHHHHHHHHHH--HCCCCTTC-CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHcCCCcceEEEECCchHHHHhhhhh--hhHHHHhc-CCCCEEEEEeCcccchHHHHHHHHHHHHHHhh
Confidence 99997765433 222 2222 32 332111110 00001111 12344677899998888999999999999887
Q ss_pred cCCeEEEEE-ecCC-CHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 258 LAGLEVDLY-GNGE-DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 258 ~~~~~l~i~-G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.|+++++++ |+++ ..+.+++.+.. ..++.|.|.+.+.+ ++|+.||+||.|| + |+ ++||||||+|||+++.
T Consensus 228 ~~~~~lv~~~g~~~~~~~~l~~~~~~-~~~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~ 301 (376)
T 1v4v_A 228 FPHLTFVYPVHLNPVVREAVFPVLKG-VRNFVLLDPLEYGSMAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRN 301 (376)
T ss_dssp CTTSEEEEECCSCHHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSS
T ss_pred CCCeEEEEECCCCHHHHHHHHHHhcc-CCCEEEECCCCHHHHHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccC
Confidence 889998886 7665 35566665543 23799998776655 9999999999998 3 33 8899999999999864
Q ss_pred -CCc-cccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHHHHcCCHHHHHHHHHHHHhc
Q 012256 334 -PSN-DFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVAEL 392 (467)
Q Consensus 334 -g~~-e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~~~ 392 (467)
++. +.+.+ .+|++++ |+++++++|.++++++.. .|++ ....|+|...++++.+.+..
T Consensus 302 ~~~~~~~~~~-g~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~ 363 (376)
T 1v4v_A 302 VTERPEGLKA-GILKLAGTDPEGVYRVVKGLLENPEELSRMRK-AKNPYGDGKAGLMVARGVAW 363 (376)
T ss_dssp SCSCHHHHHH-TSEEECCSCHHHHHHHHHHHHTCHHHHHHHHH-SCCSSCCSCHHHHHHHHHHH
T ss_pred CCcchhhhcC-CceEECCCCHHHHHHHHHHHHhChHhhhhhcc-cCCCCCCChHHHHHHHHHHH
Confidence 664 66555 4799985 999999999999987543 3332 22557776777777776663
No 28
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.85 E-value=1.7e-20 Score=185.15 Aligned_cols=233 Identities=10% Similarity=-0.038 Sum_probs=151.1
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCCcEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 186 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 186 (467)
..+.+.+++.+||+||+......... . ....+ |++.+.+.... . . ..+..+ ..+|.++
T Consensus 101 ~~l~~~l~~~~pDiv~~~~~~~~~~~--~-~~~~~--p~~~~~~~~~~--------~---~----~~~~~~--~~~d~ii 158 (374)
T 2xci_A 101 FSVKRFEELSKPKALIVVEREFWPSL--I-IFTKV--PKILVNAYAKG--------S---L----IEKILS--KKFDLII 158 (374)
T ss_dssp HHHHHHHHHHCCSEEEEESCCCCHHH--H-HHCCS--CEEEEEECCCC--------C---H----HHHHHH--TTCSEEE
T ss_pred HHHHHHHHHhCCCEEEEECccCcHHH--H-HHHhC--CEEEEEeecCc--------h---H----HHHHHH--HhCCEEE
Confidence 34667778889999998543322111 1 11112 65544332110 0 0 111111 2269999
Q ss_pred EcCHhhHHhh-hccc---ccc-cccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCe
Q 012256 187 RLSAATQEYA-NSII---CNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGL 261 (467)
Q Consensus 187 ~~S~~~~~~~-~~~i---~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~ 261 (467)
++|+...+.. ..++ .++ |+ .|.+.... .... ..+++++.|+ ..||++.+++|+..+.++.|++
T Consensus 159 ~~S~~~~~~l~~~g~~ki~vi~n~----~f~~~~~~---~~~l---~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~ 226 (374)
T 2xci_A 159 MRTQEDVEKFKTFGAKRVFSCGNL----KFICQKGK---GIKL---KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSL 226 (374)
T ss_dssp ESCHHHHHHHHTTTCCSEEECCCG----GGCCCCCS---CCCC---SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTC
T ss_pred ECCHHHHHHHHHcCCCeEEEcCCC----ccCCCcCh---hhhh---cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCc
Confidence 9997766443 2222 222 22 12111110 0001 1246666665 5689999999999998888999
Q ss_pred EEEEEecCCCH-HHHHHHHHhcCCe----------eEEecCCCCHHHHHHhcCeEEecCCC-CCCcHHHHHHHHcCCeEE
Q 012256 262 EVDLYGNGEDF-NQIQEAAEKLKIV----------VRVYPGRDHADLIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVV 329 (467)
Q Consensus 262 ~l~i~G~g~~~-~~l~~~~~~~~~~----------v~~~g~~~~~~~~~~~adv~v~ps~~-e~~~~~~lEAma~G~PVV 329 (467)
+|+|+|+|++. ++++++++++++. +.+.|...+...+|+.||++++||.+ |++|++++||||||+|||
T Consensus 227 ~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI 306 (374)
T 2xci_A 227 KLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVI 306 (374)
T ss_dssp EEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEE
Confidence 99999999886 5899998888764 44556566666999999998887654 778999999999999999
Q ss_pred Ee-CCCC-ccccccC-CCEEee--CCHHHHHHHHHHHHhcCCC--CccHHHH
Q 012256 330 CA-NHPS-NDFFKQF-PNCRTY--DDRNGFVEATLKALAEEPA--LPTEAQR 374 (467)
Q Consensus 330 ~t-~~g~-~e~v~~~-~~g~~~--~~~~~l~~~i~~~l~~~~~--~~~~~~~ 374 (467)
++ +.++ .|++.+. .+|+++ .|+++|+++|.+++++ .. .|+++++
T Consensus 307 ~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar 357 (374)
T 2xci_A 307 YGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSR 357 (374)
T ss_dssp ECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHH
T ss_pred ECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 86 4455 4655432 244443 4999999999999998 65 6766664
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.76 E-value=2.1e-18 Score=166.90 Aligned_cols=239 Identities=11% Similarity=-0.036 Sum_probs=151.0
Q ss_pred CCCCEEEecCCccccc-h-hhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEEEEcCHhh
Q 012256 116 EVADIAVLEEPEHLTW-F-HHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 192 (467)
Q Consensus 116 ~~~DvI~~~~~~~~~~-~-~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 192 (467)
.++|+|++..|+.... + .....+.++.+ +++..+|+..+.... ... .... .+++ ....||.||++|+.+
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~--~~~----~~~~-~E~~-~y~~aD~Ii~~S~~~ 144 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFS--GNF----YLMD-RTIA-YYNKADVVVAPSQKM 144 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCG--GGG----GGHH-HHHH-HHTTCSEEEESCHHH
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCc--cch----hhHH-HHHH-HHHHCCEEEECCHHH
Confidence 4689999988875332 1 11223333335 899999998664332 111 1111 2232 122379999999887
Q ss_pred HHhhh-cccccccccCCCccccchhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 012256 193 QEYAN-SIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED 271 (467)
Q Consensus 193 ~~~~~-~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~ 271 (467)
.+... .++....-++...|....... .....+++.++|+|++.....+. . + .++++|+|+|+|++
T Consensus 145 ~~~l~~~G~~~~ki~~~~~~~~~~~~~----~~~~~~~~~i~yaG~l~k~~~L~----~---l---~~~~~f~ivG~G~~ 210 (339)
T 3rhz_A 145 IDKLRDFGMNVSKTVVQGMWDHPTQAP----MFPAGLKREIHFPGNPERFSFVK----E---W---KYDIPLKVYTWQNV 210 (339)
T ss_dssp HHHHHHTTCCCSEEEECCSCCCCCCCC----CCCCEEEEEEEECSCTTTCGGGG----G---C---CCSSCEEEEESCCC
T ss_pred HHHHHHcCCCcCceeecCCCCccCccc----ccccCCCcEEEEeCCcchhhHHH----h---C---CCCCeEEEEeCCcc
Confidence 75543 333211111111121111000 01223357899999998533222 1 1 37899999999998
Q ss_pred HHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEec-CCC------CCCcHHHHHHHHcCCeEEEeCCCC-cccccc
Q 012256 272 FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNP-STT------DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ 341 (467)
Q Consensus 272 ~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~p-s~~------e~~~~~~lEAma~G~PVV~t~~g~-~e~v~~ 341 (467)
. +++ +|+|+|.+++.+ .+|+.+|+.+.+ +.. .+.|.+++||||||+|||+++.++ .+++.+
T Consensus 211 ~--------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~ 281 (339)
T 3rhz_A 211 E--------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIEN 281 (339)
T ss_dssp C--------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHH
T ss_pred c--------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHh
Confidence 5 355 899999999988 888888887775 111 256999999999999999999966 589999
Q ss_pred CCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHH---HcCCHHHHHHH
Q 012256 342 FPNCRTYDDRNGFVEATLKALAEEPALPTEAQR---HQLSWESATER 385 (467)
Q Consensus 342 ~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~---~~~sw~~~~~~ 385 (467)
+.+|+++++.++++++|..+..+.-..|+++++ +.++|+..+++
T Consensus 282 ~~~G~~~~~~~e~~~~i~~l~~~~~~~m~~na~~~a~~~~~~~f~k~ 328 (339)
T 3rhz_A 282 NGLGWIVKDVEEAIMKVKNVNEDEYIELVKNVRSFNPILRKGFFTRR 328 (339)
T ss_dssp HTCEEEESSHHHHHHHHHHCCHHHHHHHHHHHHHHTHHHHTTHHHHH
T ss_pred CCeEEEeCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 999999999999999999864432225555544 33444444443
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.73 E-value=2.5e-17 Score=164.56 Aligned_cols=260 Identities=10% Similarity=-0.050 Sum_probs=159.2
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhh------
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVD------ 179 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 179 (467)
..+.+.+++++||+|++...... +....+..+ |++.+.|+...... ....+.+.+..+..+
T Consensus 120 ~~l~~~l~~~~pDvVv~~~~~~~-----~~~aa~~~giP~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~ 187 (412)
T 3otg_A 120 DELQPVIERLRPDLVVQEISNYG-----AGLAALKAGIPTICHGVGRDTPDD-------LTRSIEEEVRGLAQRLGLDLP 187 (412)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHH-----HHHHHHHHTCCEEEECCSCCCCSH-------HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCEEEECchhhH-----HHHHHHHcCCCEEEecccccCchh-------hhHHHHHHHHHHHHHcCCCCC
Confidence 45667777889999988643222 122333334 88888777542111 112233333333222
Q ss_pred -----hhcCEEEEcCHhhHHhhhcccccccccCCCccccc--hhhHHHhhcCCCCCCceEEEEeccccccCHHHHHHHHH
Q 012256 180 -----IYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIG--KKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLD 252 (467)
Q Consensus 180 -----~~~d~vi~~S~~~~~~~~~~i~~i~gvd~~~~~~~--~~~~~~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~ 252 (467)
..+|.+++.+....+.....+. ..|....+.... ............+...+++++|++. .++.+.+.++++
T Consensus 188 ~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~ 265 (412)
T 3otg_A 188 PGRIDGFGNPFIDIFPPSLQEPEFRAR-PRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAID 265 (412)
T ss_dssp SSCCGGGGCCEEECSCGGGSCHHHHTC-TTEEECCCCCCCCCCCCCGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHH
T ss_pred cccccCCCCeEEeeCCHHhcCCcccCC-CCcceeeccCCCCCCCCCCccccccCCCCEEEEEcCCCC-cCcHHHHHHHHH
Confidence 2367788888553333322111 111111111000 0000000011223345677888886 778888888888
Q ss_pred HHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEe
Q 012256 253 DHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 331 (467)
Q Consensus 253 ~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t 331 (467)
.+.+. ++++++++++.. .+.++ ++..++.+.|++ +..++|+.||+||.++ .+.+++|||+||+|+|++
T Consensus 266 ~l~~~--~~~~~~~~g~~~~~~~l~----~~~~~v~~~~~~-~~~~~l~~ad~~v~~~----g~~t~~Ea~a~G~P~v~~ 334 (412)
T 3otg_A 266 GLAGL--DADVLVASGPSLDVSGLG----EVPANVRLESWV-PQAALLPHVDLVVHHG----GSGTTLGALGAGVPQLSF 334 (412)
T ss_dssp HHHTS--SSEEEEECCSSCCCTTCC----CCCTTEEEESCC-CHHHHGGGCSEEEESC----CHHHHHHHHHHTCCEEEC
T ss_pred HHHcC--CCEEEEEECCCCChhhhc----cCCCcEEEeCCC-CHHHHHhcCcEEEECC----chHHHHHHHHhCCCEEec
Confidence 77653 566666664433 33333 234488999999 4558999999999765 348999999999999998
Q ss_pred CCCC-----ccccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccHH---HHHcCCHHHHHHHHHHHHh
Q 012256 332 NHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTEA---QRHQLSWESATERFLQVAE 391 (467)
Q Consensus 332 ~~g~-----~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~~---~~~~~sw~~~~~~~~~~~~ 391 (467)
..++ .+.+.+..+|++++ |+++++++|.++++++.. .+++. ....++|+.+++.++++++
T Consensus 335 p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 335 PWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp CCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC
T ss_pred CCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 7743 25677777898876 789999999999998654 33332 2367899999999999886
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.70 E-value=2.2e-16 Score=155.13 Aligned_cols=238 Identities=12% Similarity=-0.059 Sum_probs=141.9
Q ss_pred hhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCEE
Q 012256 107 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 185 (467)
Q Consensus 107 ~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 185 (467)
....+.+++++||+|+.......... ....+..+ |++..-.+..+ + . .+++.. .+++.+
T Consensus 82 ~~~~~~l~~~~PDvVi~~g~~~s~p~---~laA~~~~iP~vihe~n~~~--------G----~----~nr~l~-~~a~~v 141 (365)
T 3s2u_A 82 FQALRVIRQLRPVCVLGLGGYVTGPG---GLAARLNGVPLVIHEQNAVA--------G----T----ANRSLA-PIARRV 141 (365)
T ss_dssp HHHHHHHHHHCCSEEEECSSSTHHHH---HHHHHHTTCCEEEEECSSSC--------C----H----HHHHHG-GGCSEE
T ss_pred HHHHHHHHhcCCCEEEEcCCcchHHH---HHHHHHcCCCEEEEecchhh--------h----h----HHHhhc-ccccee
Confidence 34556778899999998654322111 11222233 76632222211 1 1 112212 235766
Q ss_pred EEcCHhhHHhhhcccccccccCCCccccchhhHHHhhcCCCCCCc-eEEEEeccccccCHHHHHHHHHHHHhhcCCeEEE
Q 012256 186 IRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAK-GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD 264 (467)
Q Consensus 186 i~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~-~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~ 264 (467)
....+.......+.+..-+.+...++...... ....++++ ++++.|++...+..+.+++++..+... .++.++
T Consensus 142 ~~~~~~~~~~~~k~~~~g~pvr~~~~~~~~~~-----~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~-~~~~vi 215 (365)
T 3s2u_A 142 CEAFPDTFPASDKRLTTGNPVRGELFLDAHAR-----APLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLE-IRPAIR 215 (365)
T ss_dssp EESSTTSSCC---CEECCCCCCGGGCCCTTSS-----CCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTT-TCCEEE
T ss_pred eecccccccCcCcEEEECCCCchhhccchhhh-----cccCCCCcEEEEECCcCCccccchhhHHHHHhcccc-cceEEE
Confidence 65544322111111212245544444322211 11122334 455557787788778888998877543 244454
Q ss_pred EEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c-------
Q 012256 265 LYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N------- 336 (467)
Q Consensus 265 i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~------- 336 (467)
+.+...+.+.+.+..++.+.++++.+++++-.++|+.||++|.-+ -++++.|+|++|+|+|....+. .
T Consensus 216 ~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~N 291 (365)
T 3s2u_A 216 HQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRN 291 (365)
T ss_dssp EECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHHH
T ss_pred EecCccccccccceecccccccccccchhhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHH
Confidence 443333556777777788889999999988889999999999543 3789999999999999876532 1
Q ss_pred -cccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccHHHH
Q 012256 337 -DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTEAQR 374 (467)
Q Consensus 337 -e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~~~~ 374 (467)
+.+.+...|++++ ++++++++|.++++|++. .|+++++
T Consensus 292 A~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~ 336 (365)
T 3s2u_A 292 AEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQAR 336 (365)
T ss_dssp HHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3466666787765 689999999999998765 5666555
No 32
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.69 E-value=4e-17 Score=162.15 Aligned_cols=267 Identities=10% Similarity=0.029 Sum_probs=158.8
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
+..+.+.+++++||+|++.......+. +....++.+ |++.+..+. ..+.. ..+ +... +.+.+....+|.
T Consensus 100 ~~~l~~~l~~~kPDvVi~~g~~~~~~~--~~~aa~~~~IPv~h~~ag~-rs~~~--~~~-~~~~----~~r~~~~~~a~~ 169 (396)
T 3dzc_A 100 LLGMQQVLSSEQPDVVLVHGDTATTFA--ASLAAYYQQIPVGHVEAGL-RTGNI--YSP-WPEE----GNRKLTAALTQY 169 (396)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSHHHHH--HHHHHHTTTCCEEEETCCC-CCSCT--TSS-TTHH----HHHHHHHHTCSE
T ss_pred HHHHHHHHHhcCCCEEEEECCchhHHH--HHHHHHHhCCCEEEEECCc-ccccc--ccC-CcHH----HHHHHHHHhcCE
Confidence 346778888899999999775554443 222333344 765443322 00110 001 1011 112212223799
Q ss_pred EEEcCHhhH-Hhhhcc-----cccc-c-ccCCCccccch--h----hHHHhhcCC--CCCCceEE-EEecc-ccccCHHH
Q 012256 185 VIRLSAATQ-EYANSI-----ICNV-H-GVNPKFLEIGK--K----KKEQQQNGT--HAFAKGAY-YIGKM-VWSKGYKE 246 (467)
Q Consensus 185 vi~~S~~~~-~~~~~~-----i~~i-~-gvd~~~~~~~~--~----~~~~~~~~~--~~~~~~il-~vGrl-~~~Kg~~~ 246 (467)
+++.|+... .+.+.+ +.++ | ++|...+.+.. . ....+.... +++++.++ +.+|. +..|+++.
T Consensus 170 ~~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ 249 (396)
T 3dzc_A 170 HFAPTDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFER 249 (396)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHH
T ss_pred EECCCHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHH
Confidence 999997654 333333 3233 2 34422222111 0 022222222 23344444 44454 34588999
Q ss_pred HHHHHHHHHhhcCCeEEEEE-ecCCC-HHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHH
Q 012256 247 LLELLDDHQKELAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL 322 (467)
Q Consensus 247 li~a~~~l~~~~~~~~l~i~-G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAm 322 (467)
+++|+..+.+++|++++++. |+++. .+.+++... ...++.+.+.+.+.+ .+|+.||++|.+| | |+ ++|||
T Consensus 250 ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~-~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G-g~-~~EA~ 323 (396)
T 3dzc_A 250 ICQALITTAEQHPECQILYPVHLNPNVREPVNKLLK-GVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G-GI-QEEAP 323 (396)
T ss_dssp HHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTT-TCTTEEEECCCCHHHHHHHHHHCSEEEESC---S-GG-GTTGG
T ss_pred HHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHc-CCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c-cH-HHHHH
Confidence 99999999888899998885 65543 333443321 123788888887666 9999999999998 3 33 48999
Q ss_pred HcCCeEEEeC-CCCc-cccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHHHHcCCHHHHHHHHHHHH
Q 012256 323 AMGKIVVCAN-HPSN-DFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVA 390 (467)
Q Consensus 323 a~G~PVV~t~-~g~~-e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~ 390 (467)
+||+|||+++ .+.. |.+.++ .+++++ |++++++++.++++++.. .|+.+. ..|.....++++.+..
T Consensus 324 a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~d~~~l~~ai~~ll~d~~~~~~m~~~~-~~~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 324 SLGKPVLVMRETTERPEAVAAG-TVKLVGTNQQQICDALSLLLTDPQAYQAMSQAH-NPYGDGKACQRIADIL 394 (396)
T ss_dssp GGTCCEEECCSSCSCHHHHHHT-SEEECTTCHHHHHHHHHHHHHCHHHHHHHHTSC-CTTCCSCHHHHHHHHH
T ss_pred HcCCCEEEccCCCcchHHHHcC-ceEEcCCCHHHHHHHHHHHHcCHHHHHHHhhcc-CCCcCChHHHHHHHHH
Confidence 9999999994 4664 777776 568887 899999999999987543 222211 3455566666666554
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.67 E-value=1.5e-16 Score=158.31 Aligned_cols=268 Identities=9% Similarity=0.013 Sum_probs=158.3
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
+..+.+.+++++||+|++.......+. +....++.+ |++.+..+. ..+...... ........+.+ .+|.
T Consensus 103 ~~~l~~~l~~~kPD~Vi~~gd~~~~l~--~~laA~~~~IPv~h~~agl-rs~~~~~~~--p~~~~r~~~~~-----~a~~ 172 (403)
T 3ot5_A 103 MNGINEVIAAENPDIVLVHGDTTTSFA--AGLATFYQQKMLGHVEAGL-RTWNKYSPF--PEEMNRQLTGV-----MADI 172 (403)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHH--HHHHHHHTTCEEEEESCCC-CCSCTTSST--THHHHHHHHHH-----HCSE
T ss_pred HHHHHHHHHHcCCCEEEEECCchhHHH--HHHHHHHhCCCEEEEECCc-cccccccCC--cHHHHHHHHHH-----hcCE
Confidence 346778888899999999765544443 222333344 765333221 000000001 01122222332 3698
Q ss_pred EEEcCHhhH-Hhhhcc-----cccc-c-ccCCCccccchh-hHHHhhcCCCCCCceEEEEecccc-ccCHHHHHHHHHHH
Q 012256 185 VIRLSAATQ-EYANSI-----ICNV-H-GVNPKFLEIGKK-KKEQQQNGTHAFAKGAYYIGKMVW-SKGYKELLELLDDH 254 (467)
Q Consensus 185 vi~~S~~~~-~~~~~~-----i~~i-~-gvd~~~~~~~~~-~~~~~~~~~~~~~~~il~vGrl~~-~Kg~~~li~a~~~l 254 (467)
+++.|+... .+.+.+ +.++ | ++|...+.+... ........ .+.+..+++.||... .|++..+++++..+
T Consensus 173 ~~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l-~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l 251 (403)
T 3ot5_A 173 HFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL-GDNRLILMTAHRRENLGEPMQGMFEAVREI 251 (403)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC-TTCEEEEECCCCHHHHTTHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc-cCCCEEEEEeCcccccCcHHHHHHHHHHHH
Confidence 999997654 333333 3333 2 445322222211 11112222 333344556676543 47899999999999
Q ss_pred HhhcCCeEEEEE-ecCCC-HHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEE
Q 012256 255 QKELAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 330 (467)
Q Consensus 255 ~~~~~~~~l~i~-G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~ 330 (467)
.+++|++++++. |+++. .+.+++... ...++.+.+.+.+.+ .+|+.||++|.+| |...+|||+||+|+|+
T Consensus 252 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~ 325 (403)
T 3ot5_A 252 VESREDTELVYPMHLNPAVREKAMAILG-GHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLV 325 (403)
T ss_dssp HHHCTTEEEEEECCSCHHHHHHHHHHHT-TCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCEEE
T ss_pred HHhCCCceEEEecCCCHHHHHHHHHHhC-CCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCEEE
Confidence 888899999887 44432 233333222 123788999988766 9999999999887 4444999999999999
Q ss_pred eC-CCCc-cccccCCCEEeeC-CHHHHHHHHHHHHhcCCC--CccHHHH---HcCCHHHHHHHHHHHHh
Q 012256 331 AN-HPSN-DFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 391 (467)
Q Consensus 331 t~-~g~~-e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 391 (467)
++ .+.. +.+..+ +|++++ |++++++++.++++++.. .|+.... ...+++++++.+.+.+.
T Consensus 326 ~~~~~~~~e~v~~g-~~~lv~~d~~~l~~ai~~ll~~~~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 326 LRDTTERPEGIEAG-TLKLIGTNKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp CCSSCSCHHHHHHT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHHHT
T ss_pred ecCCCcchhheeCC-cEEEcCCCHHHHHHHHHHHHcCHHHHHHHHhhcCcccCCcHHHHHHHHHHHHhC
Confidence 94 4664 676655 788887 999999999999987543 2322111 22344555555555444
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.64 E-value=1.8e-15 Score=152.10 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=109.1
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEE-EEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEV-DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
..+++++|++. .++.+.+.+++..+.+ .+++++ +++|++++.+.++ ++..++.+.|++++. ++|+.||+||.
T Consensus 233 ~~v~v~~Gs~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~G~~~~~~~l~----~~~~~v~~~~~~~~~-~~l~~ad~~v~ 305 (430)
T 2iyf_A 233 KVVLVSLGSAF-TKQPAFYRECVRAFGN-LPGWHLVLQIGRKVTPAELG----ELPDNVEVHDWVPQL-AILRQADLFVT 305 (430)
T ss_dssp EEEEEECTTTC-C-CHHHHHHHHHHHTT-CTTEEEEEECC---CGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CeEEEEcCCCC-CCcHHHHHHHHHHHhc-CCCeEEEEEeCCCCChHHhc----cCCCCeEEEecCCHH-HHhhccCEEEE
Confidence 45788899987 5555555555554433 256777 5789887654442 234478999999877 79999999998
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCCCC-----ccccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccH---HH
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE---AQ 373 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~g~-----~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~---~~ 373 (467)
.+ .+++++|||++|+|+|++..++ .+.+.+...|+.++ |+++++++|.++++++.. .+++ ..
T Consensus 306 ~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 381 (430)
T 2iyf_A 306 HA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEM 381 (430)
T ss_dssp CC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 65 2479999999999999998754 24566677898876 789999999999987543 2332 22
Q ss_pred HHcCCHHHHHHHHHHHHhcc
Q 012256 374 RHQLSWESATERFLQVAELD 393 (467)
Q Consensus 374 ~~~~sw~~~~~~~~~~~~~~ 393 (467)
...++|+.+++.+++.++..
T Consensus 382 ~~~~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 382 AQEGGTRRAADLIEAELPAR 401 (430)
T ss_dssp HHHCHHHHHHHHHHTTSCC-
T ss_pred HhcCcHHHHHHHHHHHhhcc
Confidence 35689999999988877643
No 35
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.59 E-value=4.2e-15 Score=147.34 Aligned_cols=153 Identities=13% Similarity=0.068 Sum_probs=111.7
Q ss_pred CceEEEEeccccccCH-HHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSKGY-KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~-~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
+.+++++|++...|+. ..+++++... ++.|+++++++|++.+.+.+. ....++++.|++++. +++..||++|.
T Consensus 219 ~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~~~~-~ll~~ad~~v~ 292 (391)
T 3tsa_A 219 RRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHRALLT----DLPDNARIAESVPLN-LFLRTCELVIC 292 (391)
T ss_dssp EEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGGGGCT----TCCTTEEECCSCCGG-GTGGGCSEEEE
T ss_pred CEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcchhhcc----cCCCCEEEeccCCHH-HHHhhCCEEEe
Confidence 4466677988775555 7777777777 777899999999876644433 334488888988654 57899999995
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCCCC-----ccccccCCCEEeeC------CHHHHHHHHHHHHhcCCC--CccH---
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD------DRNGFVEATLKALAEEPA--LPTE--- 371 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~g~-----~e~v~~~~~g~~~~------~~~~l~~~i~~~l~~~~~--~~~~--- 371 (467)
++.+.+++|||++|+|+|+..... .+.+.+...|++++ |++++++++.++++++.. .+++
T Consensus 293 ----~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~ 368 (391)
T 3tsa_A 293 ----AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSD 368 (391)
T ss_dssp ----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 445679999999999999976632 25677777887764 589999999999998653 2333
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 012256 372 AQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 372 ~~~~~~sw~~~~~~~~~~~~ 391 (467)
......+|+.+++.++++..
T Consensus 369 ~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 369 EITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHTSCCHHHHHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHHHh
Confidence 22366899988888776543
No 36
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.56 E-value=1.1e-14 Score=144.77 Aligned_cols=146 Identities=12% Similarity=-0.033 Sum_probs=94.4
Q ss_pred CCceEEEEecccccc----------CHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHH
Q 012256 228 FAKGAYYIGKMVWSK----------GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADL 297 (467)
Q Consensus 228 ~~~~il~vGrl~~~K----------g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~ 297 (467)
...+++++|++...| .+..+++++..+ +++++++|++.+.+.++ ++..++++.|+++ ..+
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~~-~~~ 296 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKLAQTLQ----PLPEGVLAAGQFP-LSA 296 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC------------CCTTEEEESCCC-HHH
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcchhhhc----cCCCcEEEeCcCC-HHH
Confidence 355777889986554 455556655432 67889988876644443 3445899999985 447
Q ss_pred HHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-----ccccccCCCEEeeC----CHHHHHHHHHHHHhcCCC-
Q 012256 298 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA- 367 (467)
Q Consensus 298 ~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-----~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~- 367 (467)
+|..||++|. ++.+.+++|||+||+|+|+...++ .+.+.+...|++++ |+++++++|.++++++..
T Consensus 297 ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 372 (398)
T 4fzr_A 297 IMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYV 372 (398)
T ss_dssp HGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTHHH
T ss_pred HHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 9999999994 455789999999999999976532 25677778898876 788999999999998654
Q ss_pred -CccHHH---HHcCCHHHHHHHHH
Q 012256 368 -LPTEAQ---RHQLSWESATERFL 387 (467)
Q Consensus 368 -~~~~~~---~~~~sw~~~~~~~~ 387 (467)
.+++.. ....+|+.+++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 373 GNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHh
Confidence 333322 26688888887764
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.50 E-value=1.7e-13 Score=136.00 Aligned_cols=151 Identities=11% Similarity=-0.012 Sum_probs=103.6
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEE-EecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
..++++.|+....+ .+.+.++++.+.+ .+ +++++ +|++.+.+.+++ ...++++.+++++. ++|..||++|.
T Consensus 232 ~~v~v~~G~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~g~~~~~~~~~~----~~~~v~~~~~~~~~-~ll~~ad~~v~ 303 (402)
T 3ia7_A 232 PVLLVSLGNQFNEH-PEFFRACAQAFAD-TP-WHVVMAIGGFLDPAVLGP----LPPNVEAHQWIPFH-SVLAHARACLT 303 (402)
T ss_dssp CEEEEECCSCSSCC-HHHHHHHHHHHTT-SS-CEEEEECCTTSCGGGGCS----CCTTEEEESCCCHH-HHHTTEEEEEE
T ss_pred CEEEEECCCCCcch-HHHHHHHHHHHhc-CC-cEEEEEeCCcCChhhhCC----CCCcEEEecCCCHH-HHHhhCCEEEE
Confidence 45677888886554 2233333333322 23 55554 676656444332 34488999999887 89999999997
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCC-C----C-ccccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccH---H
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANH-P----S-NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE---A 372 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~-g----~-~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~---~ 372 (467)
.+ -..+++|||++|+|+|+... . . .+.+.+...|..++ +++++++++.++++++.. .+++ .
T Consensus 304 ~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~ 379 (402)
T 3ia7_A 304 HG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRD 379 (402)
T ss_dssp CC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 65 24788999999999997654 3 2 25667777888775 799999999999998643 2222 2
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 012256 373 QRHQLSWESATERFLQVAE 391 (467)
Q Consensus 373 ~~~~~sw~~~~~~~~~~~~ 391 (467)
.....+++.+++.+.+++.
T Consensus 380 ~~~~~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 380 ILSSGGPARAADEVEAYLG 398 (402)
T ss_dssp HHTSCHHHHHHHHHHHHHH
T ss_pred HhhCChHHHHHHHHHHHHh
Confidence 2356788888888888765
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.50 E-value=3.5e-14 Score=141.19 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=103.5
Q ss_pred CceEEEEeccccc-cCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWS-KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~-Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
..+++++|++... ++.+.+.++++.+.+. +++++++|++.+.+.++ ++..++++.|++ ...++|..||+||.
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~-~~~~ll~~ad~~v~ 305 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDISPLG----TLPRNVRAVGWT-PLHTLLRTCTAVVH 305 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCCGGGC----SCCTTEEEESSC-CHHHHHTTCSEEEE
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcChhhhc----cCCCcEEEEccC-CHHHHHhhCCEEEE
Confidence 4567778998655 4666666666655443 68899998877644333 334489999999 44579999999995
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCC----CC-c--cccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccH---
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANH----PS-N--DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE--- 371 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~----g~-~--e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~--- 371 (467)
.+.+.+++|||++|+|+|+... +. . +.+.+...|+.++ ++++++ ++++++.. .+++
T Consensus 306 ----~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~ 377 (398)
T 3oti_A 306 ----HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVRE 377 (398)
T ss_dssp ----CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHH
Confidence 4556899999999999999543 22 4 6677778898876 444444 77776543 2322
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 012256 372 AQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 372 ~~~~~~sw~~~~~~~~~~~~ 391 (467)
......+|+.+++.++++.+
T Consensus 378 ~~~~~~~~~~~~~~l~~l~~ 397 (398)
T 3oti_A 378 EMVALPTPAETVRRIVERIS 397 (398)
T ss_dssp HHHTSCCHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHhc
Confidence 23367899999998887653
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.40 E-value=3.1e-12 Score=127.65 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=101.0
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEE-EecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
..++++.|++....+ +.+..+++.+. +.+ +++++ +|++.+.+.++ ++..++++.+++++. ++|..||++|.
T Consensus 248 ~~v~v~~Gs~~~~~~-~~~~~~~~al~-~~~-~~~v~~~g~~~~~~~l~----~~~~~v~~~~~~~~~-~ll~~ad~~v~ 319 (415)
T 3rsc_A 248 PVVLVSLGTTFNDRP-GFFRDCARAFD-GQP-WHVVMTLGGQVDPAALG----DLPPNVEAHRWVPHV-KVLEQATVCVT 319 (415)
T ss_dssp CEEEEECTTTSCCCH-HHHHHHHHHHT-TSS-CEEEEECTTTSCGGGGC----CCCTTEEEESCCCHH-HHHHHEEEEEE
T ss_pred CEEEEECCCCCCChH-HHHHHHHHHHh-cCC-cEEEEEeCCCCChHHhc----CCCCcEEEEecCCHH-HHHhhCCEEEE
Confidence 456777788754332 22223333332 233 66766 67665644433 234488999998876 89999999997
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCCCC-----ccccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccH---HH
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE---AQ 373 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~g~-----~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~---~~ 373 (467)
.+ -..+++|||++|+|+|+..... .+.+.+...|..++ ++++++++|.++++++.. .+++ ..
T Consensus 320 ~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 395 (415)
T 3rsc_A 320 HG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHV 395 (415)
T ss_dssp SC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 64 2468999999999999976532 24566667787765 889999999999988543 2222 22
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 012256 374 RHQLSWESATERFLQVAE 391 (467)
Q Consensus 374 ~~~~sw~~~~~~~~~~~~ 391 (467)
....+++.+++.+.+++.
T Consensus 396 ~~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 396 RRAGGAARAADAVEAYLA 413 (415)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhh
Confidence 356778888887777654
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.37 E-value=4e-12 Score=125.50 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=91.3
Q ss_pred CceEEEEeccccc-------cCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh
Q 012256 229 AKGAYYIGKMVWS-------KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD 301 (467)
Q Consensus 229 ~~~il~vGrl~~~-------Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~ 301 (467)
..+++++|++... +.+..+++++..+ ++++++++.+++.+.++ ++..++.+ |++++ .++|..
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~~~l~----~~~~~v~~-~~~~~-~~~l~~ 279 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTVAEALR----AEVPQARV-GWTPL-DVVAPT 279 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHHHHHHH----HHCTTSEE-ECCCH-HHHGGG
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCCHHhhC----CCCCceEE-cCCCH-HHHHhh
Confidence 4578889998765 5677788877542 67888876544333332 34457888 98864 579999
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC----c-cccccCCCEEeeC----CHHHHHHHHHHHHhcC
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-DFFKQFPNCRTYD----DRNGFVEATLKALAEE 365 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~----~-e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~ 365 (467)
||+||..+ .+++++|||++|+|+|+....+ + +.+.+...|+.++ ++++++++|.++++++
T Consensus 280 ~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 348 (384)
T 2p6p_A 280 CDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKD 348 (384)
T ss_dssp CSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCH
T ss_pred CCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCH
Confidence 99999763 4578999999999999998843 2 4566667888775 7899999999999874
No 41
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.31 E-value=7.7e-12 Score=123.22 Aligned_cols=238 Identities=12% Similarity=0.012 Sum_probs=142.1
Q ss_pred hhhhhccCCCCCCCEEEecCCccccchhhhhhhhccCC-cEEEEEecchHHHHHhhccchHHHHHHHHHHHHhhhhhcCE
Q 012256 106 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 184 (467)
Q Consensus 106 ~~~l~~~l~~~~~DvI~~~~~~~~~~~~~~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (467)
+..+.+.+++++||+|++.......+. . ....+.+ |++.+..+. ..+ .........+..+.+ .+|.
T Consensus 83 ~~~l~~~l~~~kPD~Vlv~gd~~~~~a--a-laA~~~~IPv~h~eagl-rs~----~~~~pee~nR~~~~~-----~a~~ 149 (385)
T 4hwg_A 83 IEKVDEVLEKEKPDAVLFYGDTNSCLS--A-IAAKRRKIPIFHMEAGN-RCF----DQRVPEEINRKIIDH-----ISDV 149 (385)
T ss_dssp HHHHHHHHHHHCCSEEEEESCSGGGGG--H-HHHHHTTCCEEEESCCC-CCS----CTTSTHHHHHHHHHH-----HCSE
T ss_pred HHHHHHHHHhcCCcEEEEECCchHHHH--H-HHHHHhCCCEEEEeCCC-ccc----cccCcHHHHHHHHHh-----hhce
Confidence 346778888999999999765544443 1 2222334 765333322 000 000000112222222 3688
Q ss_pred EEEcCHhhH-Hhhhccc-----ccc-c-ccCCCccccc-hhhHHHhhcCC-CCCCceEEEEeccc---cccCHHHHHHHH
Q 012256 185 VIRLSAATQ-EYANSII-----CNV-H-GVNPKFLEIG-KKKKEQQQNGT-HAFAKGAYYIGKMV---WSKGYKELLELL 251 (467)
Q Consensus 185 vi~~S~~~~-~~~~~~i-----~~i-~-gvd~~~~~~~-~~~~~~~~~~~-~~~~~~il~vGrl~---~~Kg~~~li~a~ 251 (467)
+++.|+... .+.+.++ .++ | ++|...+... ......+.... .+.+.++++.+|.. ..|++..+++++
T Consensus 150 ~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al 229 (385)
T 4hwg_A 150 NITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSL 229 (385)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHH
Confidence 999997644 4443333 222 2 3332211100 11111122222 23344555666643 347899999999
Q ss_pred HHHHhhcCCeEEEEEecCCCHHHHHHHHHhc-C-----CeeEEecCCCCHH--HHHHhcCeEEecCCCCCCcHHHHHHHH
Q 012256 252 DDHQKELAGLEVDLYGNGEDFNQIQEAAEKL-K-----IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALA 323 (467)
Q Consensus 252 ~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~-----~~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~~~~~lEAma 323 (467)
..+.+++ ++.+++... + .+++.+++. + .++.+.+.+.+.+ .+|+.||+++.+| |..+.||++
T Consensus 230 ~~l~~~~-~~~vv~p~~-p---~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~a 299 (385)
T 4hwg_A 230 QMLIKEY-NFLIIFSTH-P---RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITEEASI 299 (385)
T ss_dssp HHHHHHH-CCEEEEEEC-H---HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHH
T ss_pred HHHHhcC-CeEEEEECC-h---HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHH
Confidence 9997765 777776543 2 244444443 2 2688888887766 9999999999776 456899999
Q ss_pred cCCeEEEeCCCC--ccccccCCCEEeeC-CHHHHHHHHHHHHhcCCC
Q 012256 324 MGKIVVCANHPS--NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 324 ~G~PVV~t~~g~--~e~v~~~~~g~~~~-~~~~l~~~i~~~l~~~~~ 367 (467)
+|+|+|..+... .|.+..+ ++.++. |++++++++..+++++..
T Consensus 300 lG~Pvv~~~~~ter~e~v~~G-~~~lv~~d~~~i~~ai~~ll~d~~~ 345 (385)
T 4hwg_A 300 LNLPALNIREAHERPEGMDAG-TLIMSGFKAERVLQAVKTITEEHDN 345 (385)
T ss_dssp TTCCEEECSSSCSCTHHHHHT-CCEECCSSHHHHHHHHHHHHTTCBT
T ss_pred cCCCEEEcCCCccchhhhhcC-ceEEcCCCHHHHHHHHHHHHhChHH
Confidence 999999998733 4677665 567776 999999999999998765
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.20 E-value=5.9e-11 Score=119.50 Aligned_cols=149 Identities=11% Similarity=-0.011 Sum_probs=105.8
Q ss_pred CceEEEEeccccc-----cCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcC
Q 012256 229 AKGAYYIGKMVWS-----KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYK 303 (467)
Q Consensus 229 ~~~il~vGrl~~~-----Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~ad 303 (467)
..+++++|++... +.+..+++++..+ ++++++.+.+++.+.++ ++..++.+.+++++ .++|..||
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~~~-~~ll~~ad 337 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQLEGVA----NIPDNVRTVGFVPM-HALLPTCA 337 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTTSSCS----SCCSSEEECCSCCH-HHHGGGCS
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcchhhhc----cCCCCEEEecCCCH-HHHHhhCC
Confidence 4477888998753 8888888888643 57888877665533222 23447889999987 57899999
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC----c-cccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccH-
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE- 371 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~----~-e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~- 371 (467)
++|.. +.+.+++|||++|+|+|+....+ + +.+.+...|+.++ ++++++++|.++++++.. .+++
T Consensus 338 ~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 413 (441)
T 2yjn_A 338 ATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARM 413 (441)
T ss_dssp EEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99964 44689999999999999998843 2 4566667888776 889999999999987543 2222
Q ss_pred --HHHHcCCHHHHHHHHHHHHh
Q 012256 372 --AQRHQLSWESATERFLQVAE 391 (467)
Q Consensus 372 --~~~~~~sw~~~~~~~~~~~~ 391 (467)
.......++.+++.+++++.
T Consensus 414 ~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 414 RDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 22356788888888887765
No 43
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.16 E-value=1.8e-09 Score=107.92 Aligned_cols=126 Identities=14% Similarity=0.037 Sum_probs=89.0
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEE-EEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEV-DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
..++++.|++. .+..+.+.+++..+.+ .++++ +++|.+.+.+.+. ++..++.+.+++++. ++|..||+||.
T Consensus 256 ~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~d~~v~ 327 (424)
T 2iya_A 256 PVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVDPADLG----EVPPNVEVHQWVPQL-DILTKASAFIT 327 (424)
T ss_dssp CEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSCGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCChHHhc----cCCCCeEEecCCCHH-HHHhhCCEEEE
Confidence 45677788876 3333444444444432 45666 5578766544332 234478999999877 79999999986
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCCCC-----ccccccCCCEEeeC----CHHHHHHHHHHHHhcCC
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEP 366 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~g~-----~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~ 366 (467)
. +-.++++|||++|+|+|+..... .+.+.+...|+.++ ++++++++|.++++++.
T Consensus 328 ~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 391 (424)
T 2iya_A 328 H----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391 (424)
T ss_dssp C----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred C----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHH
Confidence 4 33579999999999999998843 14556667787765 89999999999998753
No 44
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.98 E-value=1.1e-10 Score=115.80 Aligned_cols=127 Identities=19% Similarity=0.122 Sum_probs=83.0
Q ss_pred CceEEEEecccccc-CHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSK-GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~K-g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
..+++..|++...+ +...+.+++..+.+ .+..+++.+.+.+.+.. ..+..++.+.+++++. ++|..+|+||.
T Consensus 238 ~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~~----~~~~~~v~~~~~~p~~-~lL~~~~~~v~ 310 (400)
T 4amg_A 238 RRIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLALL----GELPANVRVVEWIPLG-ALLETCDAIIH 310 (400)
T ss_dssp CEEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCCCC----CCCCTTEEEECCCCHH-HHHTTCSEEEE
T ss_pred cEEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCcccccc----ccCCCCEEEEeecCHH-HHhhhhhheec
Confidence 44566678876544 33444445554433 35666666644432211 1233478888998765 58899999984
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCCCC----c-cccccCCCEEeeCCHHHHHHHHHHHHhcCC
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANHPS----N-DFFKQFPNCRTYDDRNGFVEATLKALAEEP 366 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~g~----~-e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~ 366 (467)
.+..++++|||++|+|+|+....+ + +.+.+...|+..++.+..+++|.++|+|+.
T Consensus 311 ----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~~~~~al~~lL~d~~ 370 (400)
T 4amg_A 311 ----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSLGAEQCRRLLDDAG 370 (400)
T ss_dssp ----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTTCSHHHHHHHHHCHH
T ss_pred ----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCCchHHHHHHHHcCHH
Confidence 455679999999999999987733 2 455565678888866677889999998753
No 45
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.96 E-value=3.4e-09 Score=105.25 Aligned_cols=147 Identities=13% Similarity=0.041 Sum_probs=99.1
Q ss_pred CceEEEEeccc-cccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMV-WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~-~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
+.++++.|++. ..+.+..+++++..+ ++++++.+...+.+.. +...++.+.+++++ .+++..+|++|.
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~~~~-----~~~~~v~~~~~~~~-~~ll~~~d~~v~ 290 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGLGRI-----DEGDDCLVVGEVNH-QVLFGRVAAVVH 290 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTCCCS-----SCCTTEEEESSCCH-HHHGGGSSEEEE
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCcccccc-----cCCCCEEEecCCCH-HHHHhhCcEEEE
Confidence 45777789887 666677777777653 4566666543332111 12347888999877 579999999995
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCCCC-c----cccccCCCEEeeC----CHHHHHHHHHHHHhcCCC--CccHHHH--
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANHPS-N----DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTEAQR-- 374 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~g~-~----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~~~~-- 374 (467)
.+ -..++.||+++|+|+|+...++ + +.+.+...|...+ +++++++++.++++ +.. .+.+...
T Consensus 291 ~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~ 365 (404)
T 3h4t_A 291 HG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGTI 365 (404)
T ss_dssp CC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTTC
T ss_pred CC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 53 3478999999999999997743 2 3455556787654 89999999999987 332 1111111
Q ss_pred HcCCHHHHHHHHHHHHh
Q 012256 375 HQLSWESATERFLQVAE 391 (467)
Q Consensus 375 ~~~sw~~~~~~~~~~~~ 391 (467)
..-.++.+++.+++.++
T Consensus 366 ~~~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 366 RTDGTTVAAKLLLEAIS 382 (404)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 11466777777777665
No 46
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.96 E-value=2e-09 Score=93.28 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=92.3
Q ss_pred CceEEEEeccc---cccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHH--HhcC
Q 012256 229 AKGAYYIGKMV---WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF--HDYK 303 (467)
Q Consensus 229 ~~~il~vGrl~---~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~--~~ad 303 (467)
..+++++|++. +.|++..+++++..+ +.++++++++...+ .+..++++.|++++ .+++ ..||
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~~-------~~~~~v~~~~~~~~-~~~l~~~~ad 88 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKPD-------TLGLNTRLYKWIPQ-NDLLGHPKTR 88 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCCT-------TCCTTEEEESSCCH-HHHHTSTTEE
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCcc-------cCCCcEEEecCCCH-HHHhcCCCcC
Confidence 45788899985 667788888887542 36787777665422 23448899999987 4566 8899
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-----ccccccCCCEEeeC----CHHHHHHHHHHHHhcC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 365 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-----~e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~ 365 (467)
++|.. +.+.+++|||++|+|+|+..... .+.+.+...|+.++ ++++++++|.++++++
T Consensus 89 ~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 89 AFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp EEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred EEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 99964 44699999999999999999842 24677777898876 8899999999999874
No 47
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.92 E-value=1.6e-09 Score=110.56 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=98.7
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEE--EEecC--CCHHHHHHHHHhcCC--eeEEecCCCCHH--HHHHh
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD--LYGNG--EDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHD 301 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~--i~G~g--~~~~~l~~~~~~~~~--~v~~~g~~~~~~--~~~~~ 301 (467)
+++...++ ..|..+.+++++.++.++.|+..+. ++|++ .....+++ +...|+ ++.|.|.++..+ +.|+.
T Consensus 442 v~Fg~fn~--~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~-~~~~GI~~Rv~F~g~~p~~e~la~y~~ 518 (631)
T 3q3e_A 442 VNIGIAST--TMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVER-FIKSYLGDSATAHPHSPYHQYLRILHN 518 (631)
T ss_dssp EEEEEEEC--STTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHH-HHHHHHGGGEEEECCCCHHHHHHHHHT
T ss_pred EEEEECCc--cccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHH-HHHcCCCccEEEcCCCCHHHHHHHHhc
Confidence 44555554 5899999999999999988987664 36643 33333333 334444 788899999877 89999
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc-ccc-----c-cCCCE-EeeCCHHHHHHHHHHHHhcCCC
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-DFF-----K-QFPNC-RTYDDRNGFVEATLKALAEEPA 367 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~-e~v-----~-~~~~g-~~~~~~~~l~~~i~~~l~~~~~ 367 (467)
+|+|+.|+.+. .|++.+|||+||+|||+...+.. .-+ . -|-.+ ++.+|.+++++...++..|++.
T Consensus 519 aDIfLDpfpy~-GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~ 591 (631)
T 3q3e_A 519 CDMMVNPFPFG-NTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQE 591 (631)
T ss_dssp CSEEECCSSSC-CSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHH
T ss_pred CcEEEeCCccc-CChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHH
Confidence 99999998664 49999999999999999876432 222 1 23334 3677999999999999998654
No 48
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.50 E-value=8e-07 Score=92.66 Aligned_cols=166 Identities=13% Similarity=0.002 Sum_probs=117.5
Q ss_pred CCCCceEEEEeccccccCHHH-HHHHHHHHHh--hc-----CCeEEEEEecCCC--HHH------HHHHHH------hcC
Q 012256 226 HAFAKGAYYIGKMVWSKGYKE-LLELLDDHQK--EL-----AGLEVDLYGNGED--FNQ------IQEAAE------KLK 283 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~-li~a~~~l~~--~~-----~~~~l~i~G~g~~--~~~------l~~~~~------~~~ 283 (467)
.++.+.++++.|+..+|+.++ ++..+..+.+ .. .++.+++.|.+.. ... +.+.++ +.+
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~ 602 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVG 602 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTG
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccC
Confidence 456889999999999999999 8888877753 12 3589999997764 111 334443 333
Q ss_pred C--eeEEecCCCCHH--HHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc--CCCEEeeC-CHHH
Q 012256 284 I--VVRVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ--FPNCRTYD-DRNG 353 (467)
Q Consensus 284 ~--~v~~~g~~~~~~--~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~--~~~g~~~~-~~~~ 353 (467)
- .|.|+..++-.- .++.+||++++||+ .|+.|+.=+=||..|.+.|++-.|.. |+.++ ..|||++. ++++
T Consensus 603 ~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 682 (796)
T 1l5w_A 603 DKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQ 682 (796)
T ss_dssp GGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEEEecCCHHH
Confidence 3 577776654444 99999999999999 99999999999999999999988885 55433 36899998 7777
Q ss_pred HHHHHHH------HHhcCCCCccH----HHHHcCCHHHHHHHHHHHHhcc
Q 012256 354 FVEATLK------ALAEEPALPTE----AQRHQLSWESATERFLQVAELD 393 (467)
Q Consensus 354 l~~~i~~------~l~~~~~~~~~----~~~~~~sw~~~~~~~~~~~~~~ 393 (467)
+.+.-.. ...+++. +.+ .....|||+.. ++|.++|+..
T Consensus 683 v~~l~~~~y~a~~~y~~~~~-~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L 730 (796)
T 1l5w_A 683 VKAILAKGYDPVKWRKKDKV-LDAVLKELESGKYSDGDK-HAFDQMLHSI 730 (796)
T ss_dssp HHHHHHHCCCHHHHHHHCHH-HHHHHHHHHHTTTTTTCT-TTTHHHHHHT
T ss_pred HHHHHHcccCHHHHhhcCHH-HHHHHHHHHcCCCCCCcH-HHHHHHHHHH
Confidence 6632211 1222221 211 22367999875 7788888744
No 49
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.47 E-value=8.3e-07 Score=92.88 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=114.5
Q ss_pred CCCCceEEEEeccccccCHHHH-HHHHHHHHh--hcC-----CeEEEEEecCCC--HHH------HHHHHHhc------C
Q 012256 226 HAFAKGAYYIGKMVWSKGYKEL-LELLDDHQK--ELA-----GLEVDLYGNGED--FNQ------IQEAAEKL------K 283 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~l-i~a~~~l~~--~~~-----~~~l~i~G~g~~--~~~------l~~~~~~~------~ 283 (467)
.++.++++++.|+..+|+.+++ +..+..+.+ ..| +..+++.|.+.. ... +.+.++.. +
T Consensus 547 dpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~ 626 (824)
T 2gj4_A 547 NPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVG 626 (824)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTG
T ss_pred CCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccC
Confidence 4567899999999999999998 777777742 233 578999997754 111 44444433 2
Q ss_pred C--eeEEecCCCCHH--HHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-cccc--cCCCEEeeC-CHHH
Q 012256 284 I--VVRVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFK--QFPNCRTYD-DRNG 353 (467)
Q Consensus 284 ~--~v~~~g~~~~~~--~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~--~~~~g~~~~-~~~~ 353 (467)
. .|.|+..++-.- .++..||++++||+ .|+.|+.=+=||..|.+.|++-.|.. |+.+ ...|||++. .+++
T Consensus 627 ~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~~~e 706 (824)
T 2gj4_A 627 DRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVED 706 (824)
T ss_dssp GGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCcHHH
Confidence 2 677776654444 99999999999999 99999999999999999999998886 6543 346899998 7666
Q ss_pred HHHHHHH-------HHhcCCC---CccHHHHHcCCHHHHHHHHHHHHhc
Q 012256 354 FVEATLK-------ALAEEPA---LPTEAQRHQLSWESATERFLQVAEL 392 (467)
Q Consensus 354 l~~~i~~-------~l~~~~~---~~~~~~~~~~sw~~~~~~~~~~~~~ 392 (467)
+ .++.. +.+..+. .+.......|||..- ++|.++|+.
T Consensus 707 v-~~l~~~~~~a~~~Y~~~~~l~~v~d~i~~g~fs~~~~-~~y~~ly~~ 753 (824)
T 2gj4_A 707 V-DRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQP-DLFKDIVNM 753 (824)
T ss_dssp H-HHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTCTTST-TTTHHHHHH
T ss_pred H-HHHHHcCCCHHHHhcCCHHHHHHHHHHHhCCCCCCCh-HHHHHHHHH
Confidence 6 44421 1121111 011122256888776 667777763
No 50
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.44 E-value=1.6e-06 Score=90.42 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=115.9
Q ss_pred CCCCceEEEEeccccccCHHH-HHHHHHHHHh--hc-----CCeEEEEEecCCC--HHH------HHHHHH------hcC
Q 012256 226 HAFAKGAYYIGKMVWSKGYKE-LLELLDDHQK--EL-----AGLEVDLYGNGED--FNQ------IQEAAE------KLK 283 (467)
Q Consensus 226 ~~~~~~il~vGrl~~~Kg~~~-li~a~~~l~~--~~-----~~~~l~i~G~g~~--~~~------l~~~~~------~~~ 283 (467)
.++.+.++++.|+..+|+.++ ++..+..+.+ .. .++.+++.|.+.. ... +.+.++ +.+
T Consensus 513 dpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~ 592 (796)
T 2c4m_A 513 DPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVS 592 (796)
T ss_dssp CTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTT
T ss_pred CCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccC
Confidence 456889999999999999999 8888887763 22 3589999997764 111 444444 344
Q ss_pred C--eeEEecCCCCHH--HHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc--CCCEEeeC----C
Q 012256 284 I--VVRVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ--FPNCRTYD----D 350 (467)
Q Consensus 284 ~--~v~~~g~~~~~~--~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~--~~~g~~~~----~ 350 (467)
- .|.|+..++-.- .++.+||++++||+ +|+.|+.=+=||..|.+.|++-.|.. |+.++ ..|||++. +
T Consensus 593 ~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 672 (796)
T 2c4m_A 593 PLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEE 672 (796)
T ss_dssp TTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESCCTTT
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEEEecCchhh
Confidence 3 677776664444 99999999999999 99999999999999999999998885 55433 36899987 3
Q ss_pred HHHHHHH--HHHHHhcCCCCccHHH----HHcCCHHHHHHHHHHHHhcc
Q 012256 351 RNGFVEA--TLKALAEEPALPTEAQ----RHQLSWESATERFLQVAELD 393 (467)
Q Consensus 351 ~~~l~~~--i~~~l~~~~~~~~~~~----~~~~sw~~~~~~~~~~~~~~ 393 (467)
+.++... -.....+++ .+.+.. ...|||+.. ++|.++|+..
T Consensus 673 v~~l~~~y~a~~~y~~~~-~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L 719 (796)
T 2c4m_A 673 LPALRESYKPYELYETVP-GLKRALDALDNGTLNDNNS-GLFYDLKHSL 719 (796)
T ss_dssp HHHHHHTCCHHHHHHHST-THHHHHHTTTSSSSCCTTC-CHHHHHHHHH
T ss_pred HHHHHHhhChHHHhhcCH-HHHHHHHHHHcCCCCCCCH-HHHHHHHHHH
Confidence 4444332 011122222 222211 157999876 6788888744
No 51
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.19 E-value=1.3e-06 Score=86.79 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=86.2
Q ss_pred CceEEEEecc-ccccCHHHHHHHHHHHHhhcCCeEEEEE-ecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEE
Q 012256 229 AKGAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl-~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v 306 (467)
..++++.|++ ...+..+.+++++..+ +.+++++ |.+... . ..+..++.+.+++++. ++|..||+||
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~~~~-~~l~~~d~~v 306 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH-----GRRVILSRGWADLV--L----PDDGADCFAIGEVNHQ-VLFGRVAAVI 306 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT-----TCCEEECTTCTTCC--C----SSCGGGEEECSSCCHH-HHGGGSSEEE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC-----CCeEEEEeCCCccc--c----cCCCCCEEEeCcCChH-HHHhhCCEEE
Confidence 4578888998 4788888888888764 2345554 765431 1 1222378888999874 6889999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c----cccccCCCEEeeC----CHHHHHHHHHHHHhcC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANHPS-N----DFFKQFPNCRTYD----DRNGFVEATLKALAEE 365 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~ 365 (467)
.. +-.++++|||++|+|+|+....+ + +.+.+...|+.++ ++++++++|.++ +++
T Consensus 307 ~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~ 369 (415)
T 1iir_A 307 HH----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTP 369 (415)
T ss_dssp EC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSH
T ss_pred eC----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCH
Confidence 64 33479999999999999998733 2 4566667787765 889999999998 653
No 52
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.05 E-value=0.00013 Score=68.01 Aligned_cols=94 Identities=10% Similarity=0.054 Sum_probs=67.9
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
+.+++++|..+...-...+++++. +. .++ .++.|.+.. .+++++..++.+ ++++++++++-.++|+.||+.|.
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~---~~-~~i-~vv~G~~~~~~~~l~~~~~~~~-~v~v~~~~~~m~~~m~~aDlvI~ 231 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELP---KT-KII-SIATSSSNPNLKKLQKFAKLHN-NIRLFIDHENIAKLMNESNKLII 231 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSC---TT-SCE-EEEECTTCTTHHHHHHHHHTCS-SEEEEESCSCHHHHHHTEEEEEE
T ss_pred CeEEEEECCCchhhHHHHHHHHhh---cC-CCE-EEEECCCchHHHHHHHHHhhCC-CEEEEeCHHHHHHHHHHCCEEEE
Confidence 345667787655443444455543 22 244 567787654 677877766544 88999999888899999999998
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+. |+|+.|++++|+|.|.-..
T Consensus 232 ~g-----G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 232 SA-----SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp ES-----SHHHHHHHHTTCCEEEECC
T ss_pred CC-----cHHHHHHHHcCCCEEEEeC
Confidence 42 6899999999999998765
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.94 E-value=7.6e-05 Score=79.21 Aligned_cols=160 Identities=12% Similarity=-0.052 Sum_probs=113.7
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhcCeE
Q 012256 232 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVF 305 (467)
Q Consensus 232 il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~adv~ 305 (467)
++|.+-=...|=-+.+++++.++.++.|+.+|++..+... ...+++.++..|+ ++.|.+..+..+ ..|+.+|++
T Consensus 524 v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di~ 603 (723)
T 4gyw_A 524 IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVC 603 (723)
T ss_dssp EEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSEE
T ss_pred EEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCeEE
Confidence 4443333457888999999999999999999999886544 5568888888777 688889888777 888999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCeEEEeCCCC---c---ccccc-CCCEEeeCCHHHHHHHHHHHHhcCCC--CccHHHH--
Q 012256 306 LNPSTTDVVCTTTAEALAMGKIVVCANHPS---N---DFFKQ-FPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR-- 374 (467)
Q Consensus 306 v~ps~~e~~~~~~lEAma~G~PVV~t~~g~---~---e~v~~-~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~-- 374 (467)
+-|-. -+-++|.+||+.||+|||+-.... + .++.. |-.-++..|.+++.+.-.++-.|++. .++..-+
T Consensus 604 LDt~p-~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~ 682 (723)
T 4gyw_A 604 LDTPL-CNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQ 682 (723)
T ss_dssp ECCSS-SCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eCCCC-cCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 98743 466899999999999999977532 1 12222 11125667999999988888777543 2222111
Q ss_pred ----HcCCHHHHHHHHHHHHhc
Q 012256 375 ----HQLSWESATERFLQVAEL 392 (467)
Q Consensus 375 ----~~~sw~~~~~~~~~~~~~ 392 (467)
.-|+-...++.+++.|+.
T Consensus 683 ~~~s~l~d~~~~~~~le~a~~~ 704 (723)
T 4gyw_A 683 RISSPLFNTKQYTMELERLYLQ 704 (723)
T ss_dssp HHHSSTTCHHHHHHHHHHHHHH
T ss_pred HHhCcCcCHHHHHHHHHHHHHH
Confidence 246666666666666664
No 54
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.87 E-value=1.9e-05 Score=78.32 Aligned_cols=120 Identities=12% Similarity=0.004 Sum_probs=85.9
Q ss_pred CceEEEEeccc---cccCHHHHHHHHHHHHhhcCCeEEEEE-ecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCe
Q 012256 229 AKGAYYIGKMV---WSKGYKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKV 304 (467)
Q Consensus 229 ~~~il~vGrl~---~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv 304 (467)
..++++.|++. ..+.+..+++++..+ +.+++++ |.++.. . ..+..++.+.+++++ .++|..||+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~~~-~~ll~~~d~ 305 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTELV--L----PDDRDDCFAIDEVNF-QALFRRVAA 305 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTCC--C----SCCCTTEEEESSCCH-HHHGGGSSE
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCcccc--c----cCCCCCEEEeccCCh-HHHhccCCE
Confidence 45677789874 466677777777654 3456554 765431 1 123347888899874 478999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCeEEEeCCCC-c----cccccCCCEEeeC----CHHHHHHHHHHHHhcC
Q 012256 305 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N----DFFKQFPNCRTYD----DRNGFVEATLKALAEE 365 (467)
Q Consensus 305 ~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~-~----e~v~~~~~g~~~~----~~~~l~~~i~~~l~~~ 365 (467)
||. .+-..++.||+++|+|+|+..... + +.+.+...|+.++ ++++++++|.++ +++
T Consensus 306 ~v~----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~ 370 (416)
T 1rrv_A 306 VIH----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAP 370 (416)
T ss_dssp EEE----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSH
T ss_pred EEe----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCH
Confidence 996 344679999999999999988733 2 3556666787664 889999999998 653
No 55
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.96 E-value=0.0027 Score=63.56 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=81.0
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCC---HHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcC
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYK 303 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~ad 303 (467)
..+++..|.+... ..+.+.+.+..+.+..-.+ +..+|.... .+.+.+ ..+.++.+.+++++. ++|. .+|
T Consensus 272 ~vv~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~-lw~~~~~~~~~l~~~~~~---~~~~~~~v~~w~pq~-~vL~h~~~~ 345 (456)
T 2c1x_A 272 SVVYISFGTVTTP-PPAEVVALSEALEASRVPF-IWSLRDKARVHLPEGFLE---KTRGYGMVVPWAPQA-EVLAHEAVG 345 (456)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHTCCE-EEECCGGGGGGSCTTHHH---HHTTTEEEESCCCHH-HHHTSTTEE
T ss_pred ceEEEecCccccC-CHHHHHHHHHHHHhcCCeE-EEEECCcchhhCCHHHHh---hcCCceEEecCCCHH-HHhcCCcCC
Confidence 4456666776543 2344444444443322223 445564321 111222 223477888988875 5777 668
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccC-CCEEeeC----CHHHHHHHHHHHHhcC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQF-PNCRTYD----DRNGFVEATLKALAEE 365 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~-~~g~~~~----~~~~l~~~i~~~l~~~ 365 (467)
+|| +-+-.++++||+++|+|+|+-.. +.+ ..+.+. ..|+..+ +.+++.++|.++++++
T Consensus 346 ~fv----th~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~ 413 (456)
T 2c1x_A 346 AFV----THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQE 413 (456)
T ss_dssp EEE----ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSH
T ss_pred EEE----ecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCC
Confidence 888 44557899999999999999988 432 355555 6787664 7899999999999874
No 56
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=96.82 E-value=0.0054 Score=61.13 Aligned_cols=130 Identities=11% Similarity=0.012 Sum_probs=79.9
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHH-HHHHhcCCeeEEecCCCCHHHHHHhcCeEEe
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQ-EAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 307 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~-~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ 307 (467)
..+++..|.+... ..+.+.+.+..+.+..-.+ +..+|... .+.+. ...++...++.+.+++++. ++|..+++-++
T Consensus 274 ~vVyvsfGS~~~~-~~~~~~el~~~l~~~~~~f-lw~~~~~~-~~~lp~~~~~~~~~~~~vv~w~Pq~-~vL~h~~v~~f 349 (454)
T 3hbf_A 274 SVVYISFGSVVTP-PPHELTALAESLEECGFPF-IWSFRGDP-KEKLPKGFLERTKTKGKIVAWAPQV-EILKHSSVGVF 349 (454)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHCCCE-EEECCSCH-HHHSCTTHHHHTTTTEEEESSCCHH-HHHHSTTEEEE
T ss_pred ceEEEecCCCCcC-CHHHHHHHHHHHHhCCCeE-EEEeCCcc-hhcCCHhHHhhcCCceEEEeeCCHH-HHHhhcCcCeE
Confidence 4455666776532 2344444444444332223 44455432 11111 1112233477888988874 79999994443
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cccccC-CCEEeeC----CHHHHHHHHHHHHhc
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFFKQF-PNCRTYD----DRNGFVEATLKALAE 364 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v~~~-~~g~~~~----~~~~l~~~i~~~l~~ 364 (467)
- +-+-.++++||+++|+|+|+-.. +.+ ..+.+. ..|+.++ +.+++.++|.+++++
T Consensus 350 v--tH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~ 414 (454)
T 3hbf_A 350 L--THSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSS 414 (454)
T ss_dssp E--ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSS
T ss_pred E--ecCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCC
Confidence 3 33446789999999999999887 432 355553 6787664 889999999999976
No 57
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=96.60 E-value=0.025 Score=56.58 Aligned_cols=136 Identities=9% Similarity=-0.034 Sum_probs=81.9
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEE-EEecC--CCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcC
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD-LYGNG--EDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYK 303 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~-i~G~g--~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~ad 303 (467)
..+++..|.+...-+.+.+.+++..+.+. +.+++ .+|.+ ...+.+.+.... ..++.+.+++++. ++|. .+|
T Consensus 277 ~vv~vs~GS~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~v~~w~pq~-~vL~h~~~~ 352 (463)
T 2acv_A 277 SVVFLCFGSMGVSFGPSQIREIALGLKHS--GVRFLWSNSAEKKVFPEGFLEWMEL-EGKGMICGWAPQV-EVLAHKAIG 352 (463)
T ss_dssp CEEEEECCSSCCCCCHHHHHHHHHHHHHH--TCEEEEECCCCGGGSCTTHHHHHHH-HCSEEEESSCCHH-HHHHSTTEE
T ss_pred ceEEEEeccccccCCHHHHHHHHHHHHhC--CCcEEEEECCCcccCChhHHHhhcc-CCCEEEEccCCHH-HHhCCCccC
Confidence 44566667765222334444444444332 34444 45543 111223222210 2267788888876 4676 578
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----cc-cccCCCEEee---------C-CHHHHHHHHHHHHhcCCC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DF-FKQFPNCRTY---------D-DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~-v~~~~~g~~~---------~-~~~~l~~~i~~~l~~~~~ 367 (467)
+|| +-+-.++++||+++|+|+|+-.. +.+ .. +.....|+.+ . +.+++.++|.+++++. .
T Consensus 353 ~fv----th~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~-~ 427 (463)
T 2acv_A 353 GFV----SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD-S 427 (463)
T ss_dssp EEE----ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTT-C
T ss_pred eEE----ecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHhcc-H
Confidence 888 44557899999999999999988 442 34 4566678665 3 7899999999999532 3
Q ss_pred CccHHH
Q 012256 368 LPTEAQ 373 (467)
Q Consensus 368 ~~~~~~ 373 (467)
.+++++
T Consensus 428 ~~r~~a 433 (463)
T 2acv_A 428 IVHKKV 433 (463)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 444433
No 58
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.56 E-value=0.0037 Score=55.80 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=38.4
Q ss_pred CeeEEecCCCCHHHHHH-hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCC
Q 012256 284 IVVRVYPGRDHADLIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 334 (467)
Q Consensus 284 ~~v~~~g~~~~~~~~~~-~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g 334 (467)
.++.+++++++-.++|. .||++|. -+-..+++|++++|+|.|.-..+
T Consensus 114 ~~v~v~~f~~~m~~~l~~~AdlvIs----haGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 114 LKVIGFDFSTKMQSIIRDYSDLVIS----HAGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp SEEEECCSSSSHHHHHHHHCSCEEE----SSCHHHHHHHHHTTCCCCEECCS
T ss_pred ceEEEeeccchHHHHHHhcCCEEEE----CCcHHHHHHHHHhCCCEEEEcCc
Confidence 46667788777779999 9999994 34578999999999999987663
No 59
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=96.19 E-value=0.03 Score=56.28 Aligned_cols=126 Identities=12% Similarity=0.066 Sum_probs=79.7
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEE-EecCC-------CHHHHHHHHHhcCCeeEEecCCCCHHHHHH
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL-YGNGE-------DFNQIQEAAEKLKIVVRVYPGRDHADLIFH 300 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~-------~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~ 300 (467)
..+++..|.+.. .....+.+.+..+.+. +.++++ +|... ..+.+.+ ..+.++.+.+++++. ++|.
T Consensus 296 ~vv~vs~GS~~~-~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~v~~~~pq~-~~L~ 368 (482)
T 2pq6_A 296 SVVYVNFGSTTV-MTPEQLLEFAWGLANC--KKSFLWIIRPDLVIGGSVIFSSEFTN---EIADRGLIASWCPQD-KVLN 368 (482)
T ss_dssp CEEEEECCSSSC-CCHHHHHHHHHHHHHT--TCEEEEECCGGGSTTTGGGSCHHHHH---HHTTTEEEESCCCHH-HHHT
T ss_pred ceEEEecCCccc-CCHHHHHHHHHHHHhc--CCcEEEEEcCCccccccccCcHhHHH---hcCCCEEEEeecCHH-HHhc
Confidence 345556677542 2334444444444332 355554 44321 1122322 234478888988876 5887
Q ss_pred hcCe--EEecCCCCCCcHHHHHHHHcCCeEEEeCCC-Cc----cccc-cCCCEEeeC---CHHHHHHHHHHHHhcC
Q 012256 301 DYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHP-SN----DFFK-QFPNCRTYD---DRNGFVEATLKALAEE 365 (467)
Q Consensus 301 ~adv--~v~ps~~e~~~~~~lEAma~G~PVV~t~~g-~~----e~v~-~~~~g~~~~---~~~~l~~~i~~~l~~~ 365 (467)
.+++ || +-+-.++++||+++|+|+|+-... .+ ..+. +...|+..+ +.+++.++|.++++++
T Consensus 369 h~~~~~~v----th~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~~ 440 (482)
T 2pq6_A 369 HPSIGGFL----THCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGD 440 (482)
T ss_dssp STTEEEEE----ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSH
T ss_pred CCCCCEEE----ecCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcCC
Confidence 7665 66 345578999999999999999884 32 2343 556787665 8999999999999874
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=95.93 E-value=0.018 Score=55.02 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred ceEEEEec-cccccCHH--HHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcC----Cee-EEecCCCCHH--HHH
Q 012256 230 KGAYYIGK-MVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLK----IVV-RVYPGRDHAD--LIF 299 (467)
Q Consensus 230 ~~il~vGr-l~~~Kg~~--~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~----~~v-~~~g~~~~~~--~~~ 299 (467)
.+++..|. ..+.|.+. .+.+++..+.++ ++++++.|...+.+..++..+..+ .++ .+.|..+-.+ +++
T Consensus 182 ~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali 259 (348)
T 1psw_A 182 MIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILI 259 (348)
T ss_dssp EEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHH
T ss_pred EEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHH
Confidence 45556665 44556554 888888888765 788999997766555555544332 133 4447666555 999
Q ss_pred HhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 300 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 300 ~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+.||++|-.. + |..-+ |.|+|+|+|+--.
T Consensus 260 ~~a~l~I~~D---s-g~~Hl-Aaa~g~P~v~lfg 288 (348)
T 1psw_A 260 AACKAIVTND---S-GLMHV-AAALNRPLVALYG 288 (348)
T ss_dssp HTSSEEEEES---S-HHHHH-HHHTTCCEEEEES
T ss_pred HhCCEEEecC---C-HHHHH-HHHcCCCEEEEEC
Confidence 9999999764 2 33333 9999999998654
No 61
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=95.18 E-value=0.28 Score=51.60 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=92.4
Q ss_pred CCCceEEEEeccccccCHHH-HHHHHH---HHHhh-------------cCCeEEEEEecCCC-----H---HHHHHHHH-
Q 012256 227 AFAKGAYYIGKMVWSKGYKE-LLELLD---DHQKE-------------LAGLEVDLYGNGED-----F---NQIQEAAE- 280 (467)
Q Consensus 227 ~~~~~il~vGrl~~~Kg~~~-li~a~~---~l~~~-------------~~~~~l~i~G~g~~-----~---~~l~~~~~- 280 (467)
++...++++-|+..+|...+ ++..+. ++++. .....+++.|.-.. + ..+.+.++
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 55778899999999999888 555544 33433 24577888885322 1 11222332
Q ss_pred -----hcCC--eeEEecCCC--CHHHHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc--CCCEE
Q 012256 281 -----KLKI--VVRVYPGRD--HADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ--FPNCR 346 (467)
Q Consensus 281 -----~~~~--~v~~~g~~~--~~~~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~--~~~g~ 346 (467)
+.+- .|.|+..+. -.+.++.+|||-.+.|+ .|..|+.=+=+|.-|.+.|+|-.|.+ |+.++ ..|+|
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~f 757 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVF 757 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSE
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEE
Confidence 1222 677886654 44499999999999887 49999999999999999999999985 76654 46899
Q ss_pred eeC-CHHHHHH
Q 012256 347 TYD-DRNGFVE 356 (467)
Q Consensus 347 ~~~-~~~~l~~ 356 (467)
++- +.++..+
T Consensus 758 iFG~~~~ev~~ 768 (879)
T 1ygp_A 758 LFGNLSENVEE 768 (879)
T ss_dssp EESCCHHHHHH
T ss_pred EccCCHHHHHH
Confidence 998 7666544
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=94.62 E-value=0.2 Score=47.91 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=68.4
Q ss_pred ceEEEEeccccccC--HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCee-EEecCCCCHH--HHHHhcCe
Q 012256 230 KGAYYIGKMVWSKG--YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVV-RVYPGRDHAD--LIFHDYKV 304 (467)
Q Consensus 230 ~~il~vGrl~~~Kg--~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v-~~~g~~~~~~--~~~~~adv 304 (467)
.+.+..|.-.+.|. .+.+.+.+..+.++ +.++++.|...+.+..++..+..+.++ .+.|..+-.+ .+++.||+
T Consensus 187 ~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~ 264 (349)
T 3tov_A 187 LIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNL 264 (349)
T ss_dssp EEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSE
T ss_pred EEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCE
Confidence 34455564334554 46788888888765 678888998777776777666655443 3447666666 99999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 305 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 305 ~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
+|-. ++ |..-+ |.|+|+|+|+--.+.
T Consensus 265 ~i~~---Ds-G~~Hl-Aaa~g~P~v~lfg~t 290 (349)
T 3tov_A 265 LITN---DS-GPMHV-GISQGVPIVALYGPS 290 (349)
T ss_dssp EEEE---SS-HHHHH-HHTTTCCEEEECSSC
T ss_pred EEEC---CC-CHHHH-HHhcCCCEEEEECCC
Confidence 9966 22 44444 899999999976544
No 63
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=93.76 E-value=0.56 Score=46.90 Aligned_cols=77 Identities=9% Similarity=-0.052 Sum_probs=56.1
Q ss_pred eEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC-CCc----ccc-ccCCCEEee------C-CHH
Q 012256 286 VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSN----DFF-KQFPNCRTY------D-DRN 352 (467)
Q Consensus 286 v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~-g~~----e~v-~~~~~g~~~------~-~~~ 352 (467)
+.+.+++++. ++|..+++-++- +-+-.++++||+++|+|+|+-.. +.+ ..+ .....|+.. . +.+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fv--tHgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~ 417 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFL--THCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRRE 417 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEE--ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHH
T ss_pred EEEeCccCHH-HHhCCCCcCeEE--ecccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHH
Confidence 4445688876 799988853333 34556799999999999999998 432 243 565677654 2 789
Q ss_pred HHHHHHHHHHhcC
Q 012256 353 GFVEATLKALAEE 365 (467)
Q Consensus 353 ~l~~~i~~~l~~~ 365 (467)
+++++|.++++++
T Consensus 418 ~l~~av~~vl~~~ 430 (480)
T 2vch_A 418 EVARVVKGLMEGE 430 (480)
T ss_dssp HHHHHHHHHHTST
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999753
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=93.47 E-value=0.29 Score=46.10 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=76.4
Q ss_pred ceEEEEeccccccC--HHHHHHHHHHHHhhcCCeEEEEE-ecCCCHHHHHHHHHhcCCeeEEecCCCCHH--HHHHhcCe
Q 012256 230 KGAYYIGKMVWSKG--YKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKV 304 (467)
Q Consensus 230 ~~il~vGrl~~~Kg--~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~adv 304 (467)
.+++..|.-.+.|. .+.+.+.+..+.+. ++++++. |...+.+..++..+..+ ++.+.|..+-.+ ++++.||+
T Consensus 180 ~i~l~pga~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 180 YAVFLHATTRDDKHWPEEHWRELIGLLADS--GIRIKLPWGAPHEEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp EEEEECCCSSGGGSCCHHHHHHHHHHTTTT--CCEEEECCSSHHHHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCSE
T ss_pred EEEEEeCCCCccccCCHHHHHHHHHHHHHC--CCcEEEecCCHHHHHHHHHHHhhCC-cccccCCCCHHHHHHHHHhCCE
Confidence 34555554344454 44778888777643 6888887 53334444455444333 456667766666 99999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCeEEEeCCCCc-ccccc-CCCEE--------eeC-CHHHHHHHHHHHHhc
Q 012256 305 FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-DFFKQ-FPNCR--------TYD-DRNGFVEATLKALAE 364 (467)
Q Consensus 305 ~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~-e~v~~-~~~g~--------~~~-~~~~l~~~i~~~l~~ 364 (467)
+|-. ++ |..-+ |.|+|+|+|+--.+.. ..... +.+.. +-+ ++++..+++.+++++
T Consensus 257 ~I~~---DS-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 257 VVSV---DT-GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEEE---SS-HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EEec---CC-cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 9966 22 44445 7789999998754321 11111 11111 112 888888888887764
No 65
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=80.85 E-value=17 Score=36.24 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=27.2
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEE--eeec
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLV--IPWL 48 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~--~p~l 48 (467)
|.|| ..+||..=.... |.++.......-|..+| -+||.+ =|||
T Consensus 1 ~~~k---~i~vtggv~s~l-gkgi~~as~g~ll~~~g-~~v~~~k~dpyl 45 (535)
T 3nva_A 1 MPNK---YIVVTGGVLSSV-GKGTLVASIGMLLKRRG-YNVTAVKIDPYI 45 (535)
T ss_dssp -CCE---EEEEECCCSTTT-THHHHHHHHHHHHHHTT-CCEEEEEEECSS
T ss_pred CCce---EEEEeCccccCc-chHHHHHHHHHHHHHCC-ceEEEEecCcce
Confidence 6677 888887653332 33444444458899999 788877 4665
No 66
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=77.04 E-value=26 Score=27.88 Aligned_cols=108 Identities=6% Similarity=-0.078 Sum_probs=67.4
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHH-----cCCeEEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA-----MGKIVVC 330 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma-----~G~PVV~ 330 (467)
..+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|++++-. ..+.-|+.+++.+. ..+|||.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 467888887655 455677777667665443322111144433 37776643 33455777887775 3567776
Q ss_pred eCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCCC
Q 012256 331 ANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 367 (467)
Q Consensus 331 t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 367 (467)
... ... +.+..+..+++.. +.+++.++|..++.....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 544 332 3556677787776 999999999999886544
No 67
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=74.93 E-value=12 Score=39.21 Aligned_cols=171 Identities=10% Similarity=-0.001 Sum_probs=89.7
Q ss_pred cCEEEEcCHhhHHhhhcc--cc--cc--cccCCC--ccccchh---hHHHh-hcCCCCCCceEEEEecccccc----C--
Q 012256 182 CHKVIRLSAATQEYANSI--IC--NV--HGVNPK--FLEIGKK---KKEQQ-QNGTHAFAKGAYYIGKMVWSK----G-- 243 (467)
Q Consensus 182 ~d~vi~~S~~~~~~~~~~--i~--~i--~gvd~~--~~~~~~~---~~~~~-~~~~~~~~~~il~vGrl~~~K----g-- 243 (467)
.|.+++.|+...+...+. +. .+ .|.+-. ++..... ....+ ....+.++++|+|+-.+.... |
T Consensus 479 ~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~ 558 (729)
T 3l7i_A 479 WDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKY 558 (729)
T ss_dssp CSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSS
T ss_pred CCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCcccccccc
Confidence 499999997655433321 11 11 465521 1211111 11122 233356688999998765431 1
Q ss_pred ---HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH--HhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHH
Q 012256 244 ---YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAA--EKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTT 318 (467)
Q Consensus 244 ---~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~ 318 (467)
...-++.+.+.. .+++.+++-.. |. +.... .+....+......++..++|..||++|-= ++-++
T Consensus 559 ~~~~~~~~~~l~~~l--~~~~~li~r~H-p~---~~~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lITD-----ySSv~ 627 (729)
T 3l7i_A 559 LFELKIDLDNLYKEL--GDDYVILLRMH-YL---ISNALDLSGYENFAIDVSNYNDVSELFLISDCLITD-----YSSVM 627 (729)
T ss_dssp CCCCTTCHHHHHHHH--TTTEEEEECCC-HH---HHTTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEES-----SCTHH
T ss_pred ccchhhHHHHHHHHc--CCCeEEEEecC-cc---hhccccccccCCcEEeCCCCcCHHHHHHHhCEEEee-----chHHH
Confidence 111123332221 24676666442 11 11100 01111222233344555999999999933 45689
Q ss_pred HHHHHcCCeEEEeCCCCccc----------cccCCCEEeeCCHHHHHHHHHHHHh
Q 012256 319 AEALAMGKIVVCANHPSNDF----------FKQFPNCRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 319 lEAma~G~PVV~t~~g~~e~----------v~~~~~g~~~~~~~~l~~~i~~~l~ 363 (467)
+|++..++|||.....-.+. +.+.--|-++.|.+++.++|.....
T Consensus 628 fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~~~~~ 682 (729)
T 3l7i_A 628 FDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTEPYGLAKELKNLDK 682 (729)
T ss_dssp HHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESSHHHHHHHHTTHHH
T ss_pred HhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECCHHHHHHHHhhhhc
Confidence 99999999999884321111 1222335566799999999988765
No 68
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=65.55 E-value=15 Score=30.49 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=42.6
Q ss_pred HHHHhcCeEEecC-CC---CCCcHHHHHHHHcCCeEEEeCCCCc-------c-------cccc-------------CCCE
Q 012256 297 LIFHDYKVFLNPS-TT---DVVCTTTAEALAMGKIVVCANHPSN-------D-------FFKQ-------------FPNC 345 (467)
Q Consensus 297 ~~~~~adv~v~ps-~~---e~~~~~~lEAma~G~PVV~t~~g~~-------e-------~v~~-------------~~~g 345 (467)
+.+..||++|.-- -. .|..+-+==|.|.|+||++-....+ + ..++ ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 7789999987531 12 2333334447899999998755321 1 1111 0278
Q ss_pred EeeCCHHHHHHHHHHHH
Q 012256 346 RTYDDRNGFVEATLKAL 362 (467)
Q Consensus 346 ~~~~~~~~l~~~i~~~l 362 (467)
.++.+.+++.++|...|
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 88899999999988754
No 69
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=63.08 E-value=83 Score=27.99 Aligned_cols=133 Identities=12% Similarity=-0.056 Sum_probs=65.4
Q ss_pred HHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccH-HHHHcCCHHHHHHHHHHHHhcccc
Q 012256 317 TTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTE-AQRHQLSWESATERFLQVAELDQA 395 (467)
Q Consensus 317 ~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~-~~~~~~sw~~~~~~~~~~~~~~~~ 395 (467)
..++.+..|.|||..+..... .....+..|+.+....+.+.+++.......- ......+...-.+-|.+.++..-.
T Consensus 80 ~~~~~~~~~iPvV~i~~~~~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~ 156 (289)
T 3k9c_A 80 DELGALADRVPALVVARASGL---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGL 156 (289)
T ss_dssp HHHHHHHTTSCEEEESSCCSS---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEcCCCCC---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCC
Confidence 566666669999998874321 1122344557777777777777754432111 000112222233333333332110
Q ss_pred ccCCCCCCCCCccccccchhHHhHHHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCCCCCC
Q 012256 396 VVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 463 (467)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 463 (467)
.... . ... -....+.+...+..++...+....+|+.....-.-..+.+++.|+..|+
T Consensus 157 ~~~~------~-~~~----~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~ 213 (289)
T 3k9c_A 157 SASA------T-VVT----GGTTETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDVPA 213 (289)
T ss_dssp GGGE------E-EEC----CCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCc------c-EEE----CCCCHHHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCC
Confidence 0000 0 000 0012344555566666655445566665443344567888999998773
No 70
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=62.28 E-value=53 Score=25.48 Aligned_cols=108 Identities=6% Similarity=-0.110 Sum_probs=67.0
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHHc-----CCeEE
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALAM-----GKIVV 329 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma~-----G~PVV 329 (467)
...+++|+.+.+. ...+.+.....+..+.........-+.+.. .|+++.=. ..+.-|+.+++.+.. .+|||
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 86 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVI 86 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 3567888887665 455666666666555533322222233332 48777543 234457788888764 56776
Q ss_pred EeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 330 CANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 330 ~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
.... ... +.+..+..+++.. +.+++.++|..++....
T Consensus 87 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 87 ALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 5444 332 3456677788776 99999999999887543
No 71
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=61.74 E-value=52 Score=25.24 Aligned_cols=106 Identities=11% Similarity=-0.004 Sum_probs=65.7
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHHc-----CCeEEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVVC 330 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma~-----G~PVV~ 330 (467)
..+++|+.+.+. ...+.+..++.+..+.........-+.+.. .|+++.-.. .+.-|+.+++.+.. .+|||.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 457788877655 445666666666665443322111134433 377776432 34567788887764 678877
Q ss_pred eCCCC-c-----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 331 ANHPS-N-----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 331 t~~g~-~-----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
-.... . +.+..+..+++.. +.+++.++|..++...
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 66532 2 3444556677766 9999999999998764
No 72
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=60.17 E-value=11 Score=34.17 Aligned_cols=42 Identities=7% Similarity=0.020 Sum_probs=31.9
Q ss_pred CHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 294 HADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 294 ~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
+.++++..+|+.|--+..+..---+..|+..|+|+|...+|-
T Consensus 66 dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 66 DIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGF 107 (272)
T ss_dssp CHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 344788899999977765554445677899999999977764
No 73
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=60.15 E-value=57 Score=25.14 Aligned_cols=104 Identities=10% Similarity=-0.040 Sum_probs=64.2
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH----hcCeEEecC-CCCCCcHHHHHHHH---cCCeEEEe
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH----DYKVFLNPS-TTDVVCTTTAEALA---MGKIVVCA 331 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~----~adv~v~ps-~~e~~~~~~lEAma---~G~PVV~t 331 (467)
.+++|+.+.+. ...+.......+..+.........-+.+. ..|+++.=. ..+.-|+.+++.+. ..+|||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 56788877654 44566667766655543332222224444 457776543 33455666666654 36777765
Q ss_pred CC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 332 NH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 332 ~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. ... +.+..+..+++.. +.+++.++|..++..
T Consensus 84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 84 TGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 44 332 4566677787776 999999999998874
No 74
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=59.61 E-value=45 Score=25.56 Aligned_cols=106 Identities=11% Similarity=-0.019 Sum_probs=61.0
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-C-----CCCcHHHHHHHH---cCCe
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-T-----DVVCTTTAEALA---MGKI 327 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~-----e~~~~~~lEAma---~G~P 327 (467)
..+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|+++.=.. . +.-|..+++.+. ..+|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 356777776554 344666666556555433322221144443 366665322 2 334666666654 3677
Q ss_pred EEEeCC-CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 328 VVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 328 VV~t~~-g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
||.... .. .+.+..+..+++.. +.+++.++|..++...
T Consensus 83 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 83 VVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 766543 32 23555666777765 9999999999998764
No 75
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=59.44 E-value=13 Score=32.10 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=55.8
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCC-CCHH-HHHHhcCeEEecCCCCCC
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDVV 314 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~-~~~~-~~~~~adv~v~ps~~e~~ 314 (467)
.|=...|.+|+..+.+- ..-+++++|..+. .+.+++.++..+. +-+|+|+. .... +-+..=|+++..... .=
T Consensus 50 ~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~-~e 127 (208)
T 1vi6_A 50 RKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPA-ID 127 (208)
T ss_dssp HHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTT-TT
T ss_pred HHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCC-cc
Confidence 44455666666666544 3456889997665 3457777777765 23566664 2222 223334666655322 22
Q ss_pred cHHHHHHHHcCCeEEEeCC
Q 012256 315 CTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 315 ~~~~lEAma~G~PVV~t~~ 333 (467)
-.++.||.-.|.|||+--.
T Consensus 128 ~~ai~EA~~l~IPvIalvD 146 (208)
T 1vi6_A 128 KQAVSEATAVGIPVVALCD 146 (208)
T ss_dssp HHHHHHHHHTTCCEEEEEC
T ss_pred hhHHHHHHHhCCCEEEEeC
Confidence 4689999999999998644
No 76
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=59.03 E-value=60 Score=25.02 Aligned_cols=105 Identities=11% Similarity=-0.025 Sum_probs=63.3
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh---cCeEEecCCC-C-CCcHHHHHHHH--cCCeEEEe
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNPSTT-D-VVCTTTAEALA--MGKIVVCA 331 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~---adv~v~ps~~-e-~~~~~~lEAma--~G~PVV~t 331 (467)
..+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|+++.=... + .-|..+++.+. ..+|||.-
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 457888887655 445667777777665433322111144433 4777764332 3 45666666654 36777764
Q ss_pred CC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 332 NH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 332 ~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. ... +.+..+..+++.. +.+++.++|..++..
T Consensus 85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 44 322 3455566677776 999999999998774
No 77
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=58.37 E-value=62 Score=25.63 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=38.9
Q ss_pred cCeEEecCC-CCCCcHHHHHHHH---cCCeEEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 302 YKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 302 adv~v~ps~-~e~~~~~~lEAma---~G~PVV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
.|++++=.. .+.-|+.+++.+. ..+|||.... ... +.+..+..+++.. +.+++.++|..++.
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 466665422 3444666666553 3567765544 332 3556677777776 99999999988764
No 78
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=58.27 E-value=60 Score=24.81 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHHHHHHHH--c-CCeEEEeC
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALA--M-GKIVVCAN 332 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~~lEAma--~-G~PVV~t~ 332 (467)
...+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|++++| +.-|+.+++.+. . .+|||...
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls 93 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSS 93 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEEEe
Confidence 3456777776554 344555566556554433222111133333 4787733 334566666654 3 67777654
Q ss_pred C-CCc----cccccCCCEEeeC---CHHHHHHHHHHHHhc
Q 012256 333 H-PSN----DFFKQFPNCRTYD---DRNGFVEATLKALAE 364 (467)
Q Consensus 333 ~-g~~----e~v~~~~~g~~~~---~~~~l~~~i~~~l~~ 364 (467)
. ... +.+..+..+++.. +.+++.++|..++..
T Consensus 94 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 94 DNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 4 332 3555667777765 788999999887654
No 79
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=56.84 E-value=60 Score=24.35 Aligned_cols=102 Identities=11% Similarity=-0.071 Sum_probs=60.0
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHH-----cCCeEEEeC
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA-----MGKIVVCAN 332 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma-----~G~PVV~t~ 332 (467)
+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=. ..+.-|+.+++.+. ..+|||...
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 5677776554 344555566666554432211111133433 37766532 23455778888774 357776544
Q ss_pred C-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 333 H-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 333 ~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
. +.. +.+..|..+++.. +++++.+++..++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3 432 3456677788876 99999999998875
No 80
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=56.48 E-value=59 Score=24.16 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=62.7
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-C-CCCcHHHHHHHH-----cCCeEEE
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-T-DVVCTTTAEALA-----MGKIVVC 330 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~-e~~~~~~lEAma-----~G~PVV~ 330 (467)
.+++|+.+.+. ...+.+..+..+.++.........-+.+.. .|+++.-.. . +.-|..+++.+. ..+|||.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 46777776554 445666666666665433322111133332 477765322 2 335677777764 4678888
Q ss_pred eCCCCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 331 ANHPSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 331 t~~g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
...... +.+..+..+++.. +.+++.+++..++..+
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 86 IGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp EECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred EecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 722222 3455666677766 9999999999987653
No 81
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=55.22 E-value=60 Score=24.93 Aligned_cols=107 Identities=11% Similarity=0.001 Sum_probs=60.6
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHHHHHHHH---cCCeEEEeCC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALA---MGKIVVCANH 333 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~~lEAma---~G~PVV~t~~ 333 (467)
..+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|+++.=...+.-|..+++.+. ..+|||....
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEEC
Confidence 346777776554 445666666666655433322111133333 4777654422223455555553 3577776544
Q ss_pred -CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 334 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 334 -g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
... +.+..+..+++.. +.+++.++|..++....
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 84 YVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp CCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 332 3455666677766 99999999999987643
No 82
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=54.73 E-value=13 Score=28.29 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=39.4
Q ss_pred EEEEecCCC----HHHHHHHHHhcCCeeEEe-cCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHH
Q 012256 263 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 323 (467)
Q Consensus 263 l~i~G~g~~----~~~l~~~~~~~~~~v~~~-g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma 323 (467)
++++|.|-. -+.+++.+++.|+++.+. ..+...+.....+|+++..... .+-..-++..+
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv-~~~~~~~~~~~ 71 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQI-AYMLPEIQRLL 71 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTS-GGGHHHHHHHS
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccch-hhhHHHHHHHh
Confidence 667777655 345777888888887765 5555555678899999876532 33344445544
No 83
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=54.60 E-value=68 Score=24.36 Aligned_cols=106 Identities=10% Similarity=-0.023 Sum_probs=64.6
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh---cCeEEec-CCCCCCcHHHHHHHHc----CCeEEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNP-STTDVVCTTTAEALAM----GKIVVC 330 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~---adv~v~p-s~~e~~~~~~lEAma~----G~PVV~ 330 (467)
..+++|+.+.+. ...+.+..++.+..+............+.. .|+++.= ...+.-|+.+++.+-. .+|||.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 467888887655 445667677767665543222221133332 4666543 2345567788877753 467776
Q ss_pred eCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 331 ANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 331 t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
... ... +.+..+..+++.. +.+++.++|.+++...
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 554 332 3555677787776 9999999999988764
No 84
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=53.87 E-value=65 Score=28.44 Aligned_cols=146 Identities=14% Similarity=-0.002 Sum_probs=66.4
Q ss_pred hcCeEEecCCCCCCcHHHH-HHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHHHcCCH
Q 012256 301 DYKVFLNPSTTDVVCTTTA-EALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSW 379 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~l-EAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw 379 (467)
..|.+|+.+... -..+ ++...|.|||.-+....+. ....+..++.+....+...+++.......--....-.+
T Consensus 63 ~vdgiIi~~~~~---~~~~~~l~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~ 136 (276)
T 3jy6_A 63 GFDGLILQSFSN---PQTVQEILHQQMPVVSVDREMDAC---PWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELS 136 (276)
T ss_dssp TCSEEEEESSCC---HHHHHHHHTTSSCEEEESCCCTTC---SSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTC
T ss_pred CCCEEEEecCCc---HHHHHHHHHCCCCEEEEecccCCC---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCC
Confidence 446665544333 3344 4445899999987643211 11234444666666677777765443111000000012
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCCccccccchhHHhHHHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCC
Q 012256 380 ESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGL 459 (467)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 459 (467)
....+|+....+...+.+. ........ .-+++...+...+...+....+|+.....-.-..+.+++.|+
T Consensus 137 ~~~~~R~~gf~~~l~~~~~---------~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 205 (276)
T 3jy6_A 137 RTRQERYRGILAAAQDVDV---------LEVSESSY--NHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGL 205 (276)
T ss_dssp HHHHHHHHHHHTTCSEEEE---------EEECSSSC--CHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSS
T ss_pred chHHHHHHHHHHHHHhCCc---------EEEecccc--CCcHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHcCC
Confidence 3334444443332221110 00000000 111233334444444444556666443333456678899999
Q ss_pred CCCC
Q 012256 460 VTPM 463 (467)
Q Consensus 460 ~~~~ 463 (467)
..|+
T Consensus 206 ~vP~ 209 (276)
T 3jy6_A 206 IDNQ 209 (276)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8774
No 85
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=53.79 E-value=72 Score=24.40 Aligned_cols=106 Identities=9% Similarity=-0.024 Sum_probs=62.8
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHHc-----CCeEE
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALAM-----GKIVV 329 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma~-----G~PVV 329 (467)
...+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|+++.=. ..+.-|..+++.+.. .+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 85 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIV 85 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEE
Confidence 3567888887655 445666666666655433322222244443 36666532 234457777877754 46776
Q ss_pred EeCC-CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 330 CANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 330 ~t~~-g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.-.. .. .+.+..+..+++.. +.+++.++|..++..
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 86 MLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 5443 32 23445555567765 999999999988764
No 86
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=53.64 E-value=1.3e+02 Score=30.10 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=66.1
Q ss_pred ccCHHHHHHHHHHH-Hhh----cCCeEEEEEec---CCCHHHHHHHHHhcCCeeEE-e-cCCCCHH-HHHHhcCeEEecC
Q 012256 241 SKGYKELLELLDDH-QKE----LAGLEVDLYGN---GEDFNQIQEAAEKLKIVVRV-Y-PGRDHAD-LIFHDYKVFLNPS 309 (467)
Q Consensus 241 ~Kg~~~li~a~~~l-~~~----~~~~~l~i~G~---g~~~~~l~~~~~~~~~~v~~-~-g~~~~~~-~~~~~adv~v~ps 309 (467)
..|.+..++++-.. ... ..+-.+-|+|. +.+..+++++.+++|+++.. + |+-...+ .-+..|++-+..+
T Consensus 182 ~~G~~~a~~al~~~~~~~~~~~~~~~~VNIlG~~~~~gD~~eikrlL~~~Gi~v~~~~~gg~t~~ei~~~~~A~~niv~~ 261 (533)
T 1mio_A 182 SAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQC 261 (533)
T ss_dssp HHHHHHHHHHHHHHTTBCCCCCCCTTEEEEEEECCBTSHHHHHHHHHHHHTCEEEEEEETTCCHHHHHBTTSCSEEEESC
T ss_pred hHHHHHHHHHHHHHhcccccCCCCCCeEEEEcCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhhcCCEEEEEC
Confidence 35787777766543 211 11346788884 33467899999999997653 3 5544444 4455556665543
Q ss_pred CCCCCcHHHHHHHH--cCCeEEEeCC-CCccccccCCCEEeeCCHHHHHHHHHHHHh
Q 012256 310 TTDVVCTTTAEALA--MGKIVVCANH-PSNDFFKQFPNCRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 310 ~~e~~~~~~lEAma--~G~PVV~t~~-g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~ 363 (467)
. ..+..+.+.|. +|+|.+.... |. ++.+++..+|.+++.
T Consensus 262 ~--~~~~~~A~~Leer~GiP~i~~~piG~-------------~~T~~~Lr~ia~~~g 303 (533)
T 1mio_A 262 H--RSINYIAEMMETKYGIPWIKCNFIGV-------------DGIVETLRDMAKCFD 303 (533)
T ss_dssp H--HHHHHHHHHHHHHHCCCEEECCCSSH-------------HHHHHHHHHHHHHSC
T ss_pred H--HHHHHHHHHHHHHhCCCeEEecCCCH-------------HHHHHHHHHHHHHhC
Confidence 2 24567788885 7999998642 21 145566666766654
No 87
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=53.35 E-value=15 Score=32.77 Aligned_cols=44 Identities=27% Similarity=0.206 Sum_probs=25.2
Q ss_pred CCCCCceEEEEEeccCC------ccccccchhHHHH-HHhhhcCCccEEEEeee
Q 012256 1 MDRKQQHIAIFTTASLP------WLTGTAVNPLFRA-AYLAKDGETRVTLVIPW 47 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P------~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~ 47 (467)
|.|| ||+||.+++-- +.+|--..-+... ..|.+.| .+|+++.|.
T Consensus 1 m~m~--kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG-~~V~iaS~~ 51 (244)
T 3kkl_A 1 MTPK--RALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHG-FEVDFVSET 51 (244)
T ss_dssp --CC--EEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTT-CEEEEEESS
T ss_pred CCCC--EEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 8886 69988886411 2344222223233 8899999 677777664
No 88
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=51.23 E-value=77 Score=23.97 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=62.7
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCC--eeEEecCCCCHHHHHHh---------cCeEEecCC-CCCCcHHHHHHHH----
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFHD---------YKVFLNPST-TDVVCTTTAEALA---- 323 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~---------adv~v~ps~-~e~~~~~~lEAma---- 323 (467)
.+++|+.+.+. ...+.+..+..+. .+.........-+.+.. .|+++.=.. .+.-|..+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 46777776654 4556777777665 33333332222244443 577775432 3445677777765
Q ss_pred -cCCeEEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 324 -MGKIVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 324 -~G~PVV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
..+|||.-.. ... +.+..+..+++.. +.+++.++|..++..
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHH
Confidence 3567765443 332 3455667787766 999999999888764
No 89
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=50.69 E-value=80 Score=23.99 Aligned_cols=105 Identities=7% Similarity=-0.022 Sum_probs=63.7
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCC-CCCCcHHHHHHHHc---CCeEEEeC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALAM---GKIVVCAN 332 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~-~e~~~~~~lEAma~---G~PVV~t~ 332 (467)
..+++|+.+.+. ...+.+..++.+..+.........-+.+. ..|+++.=.. .+.-|..+++.+.. .+|||...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 86 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVIS 86 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 467788887655 44466666665544444333222223333 2477776433 34556777766543 67777665
Q ss_pred C-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 333 H-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 333 ~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
. ... +.+..+..+++.. +.+++.++|.++++.
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 87 AFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 5 332 3556677788776 999999999998765
No 90
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=50.23 E-value=44 Score=25.73 Aligned_cols=107 Identities=10% Similarity=-0.074 Sum_probs=64.2
Q ss_pred CeEEEEEecCCC-HHHHHHHHHh-cCCeeEEecCCCCHHHHHHh---cCeEEecCCC--CCCcHHHHHHHHc-----CCe
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEK-LKIVVRVYPGRDHADLIFHD---YKVFLNPSTT--DVVCTTTAEALAM-----GKI 327 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~-~~~~v~~~g~~~~~~~~~~~---adv~v~ps~~--e~~~~~~lEAma~-----G~P 327 (467)
..+++|+.+.+. ...++...++ .+.++.........-+.+.. .|+++.=... +.-|+.+++.+.. .+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ 83 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTP 83 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCC
Confidence 356788877655 4456666666 56655433322111133333 4777764332 3346667766554 677
Q ss_pred EEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 328 VVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 328 VV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
||.... ... +.+..+..+++.. +.+++.++|..++....
T Consensus 84 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 84 VIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp EEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 776554 332 3556677788876 99999999999987643
No 91
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=49.49 E-value=1.6e+02 Score=27.18 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=68.2
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHH---HhhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKE---QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~---~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=.. ....+.+ ..+++|||-+ +...|.+.... ..+....-....|.|+|-+ ..=...++.++..+
T Consensus 104 ~D~iviR~~~~~~~~~lA~~~~vPVINag~-~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~--~rva~Sl~~~~~~~ 180 (323)
T 3gd5_A 104 VDGLAIRTFAQTELEEYAHYAGIPVINALT-DHEHPCQVVADLLTIRENFGRLAGLKLAYVGDG--NNVAHSLLLGCAKV 180 (323)
T ss_dssp CSEEEEECSSHHHHHHHHHHHCSCEEEEEC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC--CHHHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHhCCCCEEeCCC-CCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC--CcHHHHHHHHHHHc
Confidence 687765552 2333332 4678889887 56666543322 1122122236689999987 22245566666543
Q ss_pred HhhcCCeEEEEEecCC---CH---HHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNGE---DF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~---~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
++++.++|+.. +. +.+++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 181 -----G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~---~d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 181 -----GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQIL---RDPFEAARGAHILYTDVW 234 (323)
T ss_dssp -----TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCC
T ss_pred -----CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEE---CCHHHHhcCCCEEEEece
Confidence 57899999632 22 22333444556555544 344578999999887643
No 92
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=49.34 E-value=84 Score=23.87 Aligned_cols=106 Identities=12% Similarity=-0.033 Sum_probs=63.5
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEE-ecCCCCHHHHHH--hcCeEEecCCC--CCCcHHHHHHHH--cCCeEEE
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRV-YPGRDHADLIFH--DYKVFLNPSTT--DVVCTTTAEALA--MGKIVVC 330 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~-~g~~~~~~~~~~--~adv~v~ps~~--e~~~~~~lEAma--~G~PVV~ 330 (467)
...+++|+.+.+. ...+.+..+..+..+.. .......-+.+. ..|+++.-... +.-|..+++.+. ..+|||.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ 87 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIF 87 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 4567888887655 44566666666665542 332222223333 24877764332 234566666554 5788776
Q ss_pred eCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 331 ANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 331 t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
-.. ... +.+..+..+++.. +.+++.++|..++..
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 88 ITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 544 332 3455666777765 999999999998764
No 93
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=49.14 E-value=71 Score=24.69 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=58.2
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcC-CeeEEecCCCCHH---HHH---HhcCeEEecCC-CCCCcHHHHHHHH---cCCe
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLK-IVVRVYPGRDHAD---LIF---HDYKVFLNPST-TDVVCTTTAEALA---MGKI 327 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~-~~v~~~g~~~~~~---~~~---~~adv~v~ps~-~e~~~~~~lEAma---~G~P 327 (467)
..+++|+.+.+. ...+.+.....+ ..+... .+..+ .+. ...|++++=.. .+.-|+.+++.+. ..+|
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRYRVTRT--VGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSCEEEEE--CCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEe--CCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 356666665544 334555555555 443332 22222 222 33577665422 2334555665553 3567
Q ss_pred EEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 328 VVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 328 VV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
||.-.. ... +.+..+..+++.. +.+++.++|..++...
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 766544 332 3455666677776 9999999999998764
No 94
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=49.11 E-value=21 Score=30.92 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=23.9
Q ss_pred CCCCCceEEEEEeccCCccccccch-hHHHHHHhhhcCCccEEEEe
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDGETRVTLVI 45 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~-~~~~~~~L~~~G~~~V~~~~ 45 (467)
|+++++||++-.+.. +.+.. ....++.|.+.| .+|.+++
T Consensus 1 m~l~~k~IllgiTGs-----iaayk~~~~ll~~L~~~g-~eV~vv~ 40 (207)
T 3mcu_A 1 MSLKGKRIGFGFTGS-----HCTYEEVMPHLEKLIAEG-AEVRPVV 40 (207)
T ss_dssp -CCTTCEEEEEECSC-----GGGGTTSHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCCEEEEEEECh-----HHHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 777778887766654 22333 455569999999 4444443
No 95
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=48.99 E-value=86 Score=23.88 Aligned_cols=107 Identities=6% Similarity=0.035 Sum_probs=66.2
Q ss_pred CeEEEEEecCCC-HHHHHHHHHh-cCCe-eEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHHc-----CCeE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEK-LKIV-VRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIV 328 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~-~~~~-v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma~-----G~PV 328 (467)
..+++|+.+.+. ...+.+..+. .+.. +.........-+.+.. .|+++.-.. .+.-|..+++.+.. .+||
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 467888887655 4456666666 6665 4444333222244443 477775433 34456777777754 5677
Q ss_pred EEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 329 VCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 329 V~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
|.... ... +.+..+..+++.. +.+++.++|..++....
T Consensus 88 i~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 75443 332 3555677777776 99999999999987643
No 96
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=47.63 E-value=74 Score=29.30 Aligned_cols=121 Identities=11% Similarity=0.038 Sum_probs=70.9
Q ss_pred cCEEEEcC---HhhHHhhh-cccccccccCCCccccchhhHH---HhhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLS---AATQEYAN-SIICNVHGVNPKFLEIGKKKKE---QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S---~~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~---~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=. .....+.+ ..+++|||-+-+...|.+.... ..+....-....+.|+|-+....=...++.++..
T Consensus 101 ~D~iviR~~~~~~~~~la~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~- 179 (308)
T 1ml4_A 101 CDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTF- 179 (308)
T ss_dssp CSEEEEEESSTTHHHHHHHTCSSCEEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGG-
T ss_pred CcEEEEecCChhHHHHHHHhCCCCEEeCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHH-
Confidence 58666544 22334432 3578889887556666544322 1222222235689999976433334555555543
Q ss_pred HhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
. ++++.++|+... ...+.+.+++.|..+.+. .+.++.+..+||+.....
T Consensus 180 ---~-G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvyt~~~ 230 (308)
T 1ml4_A 180 ---Y-DVELYLISPELLRMPRHIVEELREKGMKVVET---TTLEDVIGKLDVLYVTRI 230 (308)
T ss_dssp ---S-CEEEEEECCGGGCCCHHHHHHHHHTTCCEEEE---SCTHHHHTTCSEEEECCC
T ss_pred ---C-CCEEEEECCccccCCHHHHHHHHHcCCeEEEE---cCHHHHhcCCCEEEECCc
Confidence 3 689999996322 244556666666555444 344578899999887654
No 97
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=47.35 E-value=99 Score=24.08 Aligned_cols=107 Identities=11% Similarity=-0.065 Sum_probs=60.3
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhc-CC-eeEEecCCCCHHHHHHh---cCeEEecCC-CCCCcHHHHHHHH---cCCeEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKL-KI-VVRVYPGRDHADLIFHD---YKVFLNPST-TDVVCTTTAEALA---MGKIVV 329 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~-~~-~v~~~g~~~~~~~~~~~---adv~v~ps~-~e~~~~~~lEAma---~G~PVV 329 (467)
..+++|+.+.+. ...+....+.. +. .+.........-+.+.. .|+++.-.. .+.-|+.+++.+. .++|||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 457788876655 44566666665 54 33333332222245544 477775432 2334666666654 367887
Q ss_pred EeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 330 CANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 330 ~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
.... ... +.+..+..+++.. +.+++.++|..++....
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 6544 322 3455666677765 99999999999988644
No 98
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=47.13 E-value=99 Score=24.02 Aligned_cols=104 Identities=8% Similarity=-0.024 Sum_probs=59.1
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHHh--cCeEEecC-CCCCCcHHHHHHHHc---CCeEEE
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPS-TTDVVCTTTAEALAM---GKIVVC 330 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~--adv~v~ps-~~e~~~~~~lEAma~---G~PVV~ 330 (467)
.+++|+.+.+. ...+.+.....+....+ ......+ +.+.. .|++++=. ..+.-|+.+++.+.. .+|||.
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v-~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 99 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESV-LQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVV 99 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEE-EEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 56777776544 33455555544321111 1222222 33332 36666543 234556777776643 567665
Q ss_pred eCC-CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 331 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 331 t~~-g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
... .. .+.+..+..+++.. +.+++.++|..++...
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 544 33 24556677788876 9999999999998764
No 99
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=47.05 E-value=99 Score=24.03 Aligned_cols=104 Identities=9% Similarity=0.040 Sum_probs=62.6
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCC--eeEEecCCCCHHHHHH-----------hcCeEEecC-CCCCCcHHHHHHHHc
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFH-----------DYKVFLNPS-TTDVVCTTTAEALAM 324 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~-----------~adv~v~ps-~~e~~~~~~lEAma~ 324 (467)
..+++|+.+.+. ...+++..+..+. .+.........-+.+. ..|+++.=. ..+.-|+.+++.+..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 357788887655 4557777777776 3433332222224442 246766542 234567778887754
Q ss_pred -----CCeEEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 325 -----GKIVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 325 -----G~PVV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
++|||.... ... +.+..+..+++.. +.+++.++|.++..
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 567766544 332 3556677787776 99999999988754
No 100
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=46.97 E-value=98 Score=24.18 Aligned_cols=102 Identities=9% Similarity=0.001 Sum_probs=61.4
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH-----hcCeEEecCC-CCCCcHHHHHHHH---cCCeEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH-----DYKVFLNPST-TDVVCTTTAEALA---MGKIVV 329 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~-----~adv~v~ps~-~e~~~~~~lEAma---~G~PVV 329 (467)
..+++|+.+.+. ...+.+.....+..+.... ..++.+. ..|+++.-.. .+.-|..+++.+. ..+|||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFA---SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEES---CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEEC---CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 346778876655 4456666666666554332 2332222 2477765432 3345666666653 367877
Q ss_pred EeCC-CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 330 CANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 330 ~t~~-g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.... .. .+.+..+..+++.. +.+++.++|..++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 6544 33 23555667777776 999999999998764
No 101
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=46.97 E-value=25 Score=30.24 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=26.2
Q ss_pred CCCCCceEEEEEeccCCccccccc-hhHHHHHHhhhcCCccEEEEee
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAV-NPLFRAAYLAKDGETRVTLVIP 46 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~-~~~~~~~~L~~~G~~~V~~~~p 46 (467)
|+++++||++--+.. +.+. .....++.|.+.| .+|.+++.
T Consensus 3 m~l~~k~I~lgiTGs-----~aa~~k~~~ll~~L~~~g-~eV~vv~T 43 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGS-----HCTYHEVLPQMERLVELG-AKVTPFVT 43 (201)
T ss_dssp CCCTTCEEEEECCSC-----GGGGGGTHHHHHHHHHTT-CEEEEECS
T ss_pred CCcCCCEEEEEEECh-----HHHHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 777778887766554 2244 4566669999999 45555443
No 102
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=46.59 E-value=1.8e+02 Score=28.54 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=54.9
Q ss_pred eEEEEEecC---CCHHHHHHHHHhcCCeeE-Ee-cCCCCHH-HHHHhcCeEEecCCCCCCcHHHHHHH--HcCCeEEEeC
Q 012256 261 LEVDLYGNG---EDFNQIQEAAEKLKIVVR-VY-PGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEAL--AMGKIVVCAN 332 (467)
Q Consensus 261 ~~l~i~G~g---~~~~~l~~~~~~~~~~v~-~~-g~~~~~~-~~~~~adv~v~ps~~e~~~~~~lEAm--a~G~PVV~t~ 332 (467)
-.+-|+|+- .+..+++++.+++|+++. .+ |+-...+ .-+..|++-+.... .++..+.+.| -+|.|.+...
T Consensus 204 ~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~~gg~~~~el~~~~~A~~niv~~~--~~~~~~A~~Le~~~GiP~i~~~ 281 (483)
T 3pdi_A 204 HDVNLIGEYNIAGEFWHVLPLLDELGLRVLCTLAGDARYREVQTMHRAEVNMMVCS--KAMLNVARKLQETYGTPWFEGS 281 (483)
T ss_dssp EEEEEESCCCBTTGGGGTHHHHHHHTEEEEEEETSSBCHHHHTTGGGCSEEEEESC--CTTHHHHHHHHHHHCCCEEEEC
T ss_pred CeEEEEcCCCChhHHHHHHHHHHHCCCcEEEECCCcCCHHHHHhhhcCCEEEEEch--hhHHHHHHHHHHHhCCCEeecC
Confidence 468888852 245678999999999765 33 4445444 45555666554321 2355666666 4799988653
Q ss_pred C-CCccccccCCCEEeeCCHHHHHHHHHHHHhc
Q 012256 333 H-PSNDFFKQFPNCRTYDDRNGFVEATLKALAE 364 (467)
Q Consensus 333 ~-g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~ 364 (467)
. |. ++.+++..+|.+++..
T Consensus 282 p~Gi-------------~~T~~~L~~ia~~~g~ 301 (483)
T 3pdi_A 282 FYGI-------------TDTSQALRDFARLLDD 301 (483)
T ss_dssp SSSH-------------HHHHHHHHHHHHHTTC
T ss_pred CCCH-------------HHHHHHHHHHHHHhCC
Confidence 2 21 1455677777776643
No 103
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=45.72 E-value=93 Score=23.30 Aligned_cols=105 Identities=7% Similarity=-0.026 Sum_probs=60.1
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH---hcCeEEecCC-CC-CCcHHHHHHHH---cCCeEEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH---DYKVFLNPST-TD-VVCTTTAEALA---MGKIVVC 330 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~---~adv~v~ps~-~e-~~~~~~lEAma---~G~PVV~ 330 (467)
..+++|+.+.+. ...+....+..+..+.........-+.+. ..|+++.=.. .+ .-|+.+++.+. ..+|||.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 467888887655 34566666666665543322111114443 3477765432 33 45666666654 3677765
Q ss_pred eCC-CCcc----ccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 331 ANH-PSND----FFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 331 t~~-g~~e----~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
... ...+ .+.. .+++.. +.+++.++|.+++....
T Consensus 85 ~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 85 ISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHhcCC
Confidence 543 3322 2222 256665 99999999999887644
No 104
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=45.26 E-value=85 Score=29.09 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=49.6
Q ss_pred hcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 257 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 257 ~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..++++++-+-+ .+.+..++.+++++.....+ ...++++.. .|+++..+....-.-.+.+|+..|++|++-+.
T Consensus 24 ~~~~~~l~av~d-~~~~~~~~~~~~~g~~~~~~---~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP 98 (344)
T 3mz0_A 24 KLSGAEIVAVTD-VNQEAAQKVVEQYQLNATVY---PNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKP 98 (344)
T ss_dssp TCSSEEEEEEEC-SSHHHHHHHHHHTTCCCEEE---SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred hCCCcEEEEEEc-CCHHHHHHHHHHhCCCCeee---CCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCC
Confidence 357777765444 34466677777776433332 444577776 79999887666556667899999999998665
No 105
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=45.03 E-value=1.1e+02 Score=23.87 Aligned_cols=106 Identities=10% Similarity=0.053 Sum_probs=62.0
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHH---cCCeEEEe
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCA 331 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma---~G~PVV~t 331 (467)
...+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.-.. .+.-|..+++.+. ..+|||.-
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 3567888887655 445666666666555433322111134433 377775432 3345666666653 36787765
Q ss_pred CC-CCc----cccccC-CCEEeeC--CHHHHHHHHHHHHhc
Q 012256 332 NH-PSN----DFFKQF-PNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 332 ~~-g~~----e~v~~~-~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. ... +.+..+ ..+++.. +.+++.++|..++..
T Consensus 86 s~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 86 SGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp ECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 54 332 344444 5677766 999999999988763
No 106
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=44.98 E-value=15 Score=36.29 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=27.1
Q ss_pred CCceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeee
Q 012256 4 KQQHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPW 47 (467)
Q Consensus 4 k~~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~ 47 (467)
+++||++++. | ..+.++++..+ +.|+++| |+||++++.
T Consensus 7 ~~~~vl~~p~---p--~~GHi~P~l~La~~L~~rG-~~VT~v~t~ 45 (482)
T 2pq6_A 7 RKPHVVMIPY---P--VQGHINPLFKLAKLLHLRG-FHITFVNTE 45 (482)
T ss_dssp -CCEEEEECC---S--SHHHHHHHHHHHHHHHHTT-CEEEEEEEH
T ss_pred CCCEEEEecC---c--cchhHHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 3357888852 2 23488888876 9999999 888888764
No 107
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=44.93 E-value=1e+02 Score=26.86 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCC---C----HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCC----
Q 012256 244 YKELLELLDDHQKELAGLEVDLYGNGE---D----FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD---- 312 (467)
Q Consensus 244 ~~~li~a~~~l~~~~~~~~l~i~G~g~---~----~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e---- 312 (467)
++.+.+++..+.+. +-++.|+..+. + ...+.+..+++|.++...-..++..+.+..||.+++|- -+
T Consensus 17 l~~~~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~ 93 (229)
T 1fy2_A 17 LEHALPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQL 93 (229)
T ss_dssp TTTTHHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHH
T ss_pred HHHHHHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHH
Confidence 33345555555432 45677776542 2 23345556667766555433344447788999999995 22
Q ss_pred -------CCcHHHHHHHHcCCeEEEeCCCCc
Q 012256 313 -------VVCTTTAEALAMGKIVVCANHPSN 336 (467)
Q Consensus 313 -------~~~~~~lEAma~G~PVV~t~~g~~ 336 (467)
++--.+-|+...|+|++.+-.|..
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~ 124 (229)
T 1fy2_A 94 LKESRERGLLAPMADRVKRGALYIGWSAGAN 124 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCEEEEETHHHH
T ss_pred HHHHHHCChHHHHHHHHHcCCEEEEECHHHH
Confidence 333457788889999999998763
No 108
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=44.78 E-value=1.6e+02 Score=25.83 Aligned_cols=146 Identities=8% Similarity=0.004 Sum_probs=70.3
Q ss_pred hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHHHcCCHH
Q 012256 301 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 380 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 380 (467)
..|.+|+.+.... ...+.++...|.|||..+.... ....+..++.+....+.+.+++.......--. ...+..
T Consensus 68 ~vdgiIi~~~~~~-~~~~~~~~~~~iPvV~~~~~~~-----~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~-~~~~~~ 140 (289)
T 3g85_A 68 SFDAAIIANISNY-DLEYLNKASLTLPIILFNRLSN-----KYSSVNVDNYKMGEKASLLFAKKRYKSAAAIL-TESLND 140 (289)
T ss_dssp CCSEEEESSCCHH-HHHHHHHCCCSSCEEEESCCCS-----SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEE-CCCSSH
T ss_pred CCCEEEEecCCcc-cHHHHHhccCCCCEEEECCCCC-----CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEe-CCcccc
Confidence 3466665543221 2456666778999999987421 12234455667777777777775443111000 000111
Q ss_pred HHHHH---HHHHHhccccccCCCCCCCCCccccccchhHHhHHHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHh
Q 012256 381 SATER---FLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKEL 457 (467)
Q Consensus 381 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 457 (467)
...+| |.+.++........ . .... -....+.+...+..++...+....+|+.....-....+.+++.
T Consensus 141 ~~~~R~~gf~~~l~~~~~~~~~------~--~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 210 (289)
T 3g85_A 141 AMDNRNKGFIETCHKNGIKISE------N--HIIA--AENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKR 210 (289)
T ss_dssp HHHHHHHHHHHHHHHTTCBCCG------G--GEEE--CCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcCCCCCh------h--heec--cCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHc
Confidence 12222 22222211000000 0 0000 0112344555566666655545566665443444567889999
Q ss_pred CCCCCC
Q 012256 458 GLVTPM 463 (467)
Q Consensus 458 ~~~~~~ 463 (467)
|+..|+
T Consensus 211 g~~vP~ 216 (289)
T 3g85_A 211 QISIPD 216 (289)
T ss_dssp TCCTTT
T ss_pred CCCCCC
Confidence 998773
No 109
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.77 E-value=24 Score=30.31 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=55.3
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCC-CCHH-HHHHhcCeEEecCCCCC
Q 012256 240 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~-~~~~-~~~~~adv~v~ps~~e~ 313 (467)
-.|=...|.+|+..+... ..-.++++|..+. .+.+.+.++..|. +-+|+|+. .... +-+..=|+++..... .
T Consensus 45 L~kT~~~L~~A~~~i~~~-~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~-~ 122 (202)
T 3j20_B 45 VRKTDERLKVAGKFLAKF-EPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPR-A 122 (202)
T ss_dssp HHHHHHHHHHHHHHHHHS-CSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTT-T
T ss_pred HHHHHHHHHHHHHHHHhh-CCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeCCc-c
Confidence 345556666777666544 3456888997665 4456666766654 44677664 2222 223334666555322 1
Q ss_pred CcHHHHHHHHcCCeEEEeC
Q 012256 314 VCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~ 332 (467)
=-.++.||.-.|.|+|+--
T Consensus 123 d~~ai~EA~~l~IP~Ial~ 141 (202)
T 3j20_B 123 DHQAMREAVEIGIPIVALV 141 (202)
T ss_dssp SHHHHHHHHHHTCCEEEEE
T ss_pred chHHHHHHHHcCCCEEEEE
Confidence 2467999999999999743
No 110
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=44.77 E-value=1e+02 Score=23.50 Aligned_cols=106 Identities=8% Similarity=-0.043 Sum_probs=62.8
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHHc-----CCeEEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALAM-----GKIVVC 330 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma~-----G~PVV~ 330 (467)
..+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=. ..+.-|+.+++.+-. .+|||.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~ 83 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILM 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEE
Confidence 356777776554 344666666666555432211111133333 37776542 234457777777643 567765
Q ss_pred eCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 331 ANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 331 t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
... +.. +.+..+..+++.. +.+++.++|..++...
T Consensus 84 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 84 LTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 544 332 3456677788876 9999999999998754
No 111
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=44.68 E-value=66 Score=30.24 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=60.7
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v 306 (467)
+..+..+|--.-.+.+...+.++..+....++++++-+-+. +.+..++.+++++.. ++ +.+.++++.. .|+++
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~-~~~~a~~~a~~~g~~-~~---y~d~~ell~~~~iDaV~ 99 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEA-NAGLAEARAGEFGFE-KA---TADWRALIADPEVDVVS 99 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC---TTHHHHHHHHTCS-EE---ESCHHHHHHCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECC-CHHHHHHHHHHhCCC-ee---cCCHHHHhcCCCCcEEE
Confidence 34677777422223232233333333334567777766553 334566677777753 22 2445577875 48888
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..+....-.-.+++|+..|++|++=+.
T Consensus 100 IatP~~~H~~~a~~al~aGkhVl~EKP 126 (393)
T 4fb5_A 100 VTTPNQFHAEMAIAALEAGKHVWCEKP 126 (393)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred ECCChHHHHHHHHHHHhcCCeEEEccC
Confidence 887666666678999999999999776
No 112
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=44.41 E-value=18 Score=33.12 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=30.2
Q ss_pred CHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 294 HADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 294 ~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
+.++++..+||.|--|..+..---+..++..|+|+|...+|-
T Consensus 81 dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 81 DPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp CHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 344778889999966655544334567889999999877664
No 113
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=44.32 E-value=59 Score=29.62 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=49.1
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.++++++-+-+. +.+..++.+++.+... +...++++...|+++..+......-.+.+|+..|++|++-+.
T Consensus 29 ~~~~~l~av~d~-~~~~~~~~a~~~~~~~-----~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (308)
T 3uuw_A 29 SERFEFVGAFTP-NKVKREKICSDYRIMP-----FDSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVDKP 98 (308)
T ss_dssp CSSSEEEEEECS-CHHHHHHHHHHHTCCB-----CSCHHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred CCCeEEEEEECC-CHHHHHHHHHHcCCCC-----cCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCC
Confidence 467777744443 4456666677666431 455567888899999887766656667899999999998764
No 114
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=44.12 E-value=1.7e+02 Score=25.78 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCC----CCcHHHH
Q 012256 244 YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD----VVCTTTA 319 (467)
Q Consensus 244 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e----~~~~~~l 319 (467)
+..+++.+.+..++ -++.+++.....+.+...+..+. -.-+..|.+|+.+... ...-.+-
T Consensus 30 ~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~~~---------------l~~~~vdgiIi~~~~~~~~~~~~~~~~ 93 (298)
T 3tb6_A 30 FPSIIRGIESYLSE-QGYSMLLTSTNNNPDNERRGLEN---------------LLSQHIDGLIVEPTKSALQTPNIGYYL 93 (298)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEECTTCHHHHHHHHHH---------------HHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCCChHHHHHHHHH---------------HHHCCCCEEEEecccccccCCcHHHHH
Confidence 45555555554443 25666666544443222222221 1112356665543322 1223445
Q ss_pred HHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCC
Q 012256 320 EALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 367 (467)
Q Consensus 320 EAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~ 367 (467)
++...|.|||..+....+. ....+..++.+....+...+++....
T Consensus 94 ~~~~~~iPvV~~~~~~~~~---~~~~V~~d~~~~~~~a~~~L~~~G~~ 138 (298)
T 3tb6_A 94 NLEKNGIPFAMINASYAEL---AAPSFTLDDVKGGMMAAEHLLSLGHT 138 (298)
T ss_dssp HHHHTTCCEEEESSCCTTC---SSCEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHhcCCCEEEEecCcCCC---CCCEEEeCcHHHHHHHHHHHHHCCCC
Confidence 6677899999988743221 12334555667777777777776443
No 115
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=43.57 E-value=18 Score=32.21 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=54.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhcCeEEecCCCCCC
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVV 314 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~adv~v~ps~~e~~ 314 (467)
.|=...|.+|+..+..-...-+++++|..+. .+.+++.++..+. +-+|+|+.--.. .-+..=|+++.....+ =
T Consensus 85 ~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~-e 163 (253)
T 3bch_A 85 KRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRA-D 163 (253)
T ss_dssp HHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTT-T
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCc-c
Confidence 4445556666666652112345888897655 3446677777765 335666642222 2233446666553221 2
Q ss_pred cHHHHHHHHcCCeEEEeCC
Q 012256 315 CTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 315 ~~~~lEAma~G~PVV~t~~ 333 (467)
-.++.||.-.|.|||+--.
T Consensus 164 ~~AI~EA~~lgIPvIalvD 182 (253)
T 3bch_A 164 HQPLTEASYVNLPTIALCN 182 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEC
T ss_pred chHHHHHHHhCCCEEEEEc
Confidence 4689999999999998654
No 116
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=43.56 E-value=64 Score=26.44 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=43.3
Q ss_pred cccCHH--HHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHh-cCCeeEEecCCC-CHHHHHHhcCeEEec
Q 012256 240 WSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LKIVVRVYPGRD-HADLIFHDYKVFLNP 308 (467)
Q Consensus 240 ~~Kg~~--~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~~~v~~~g~~~-~~~~~~~~adv~v~p 308 (467)
..|+.| ..++++... ...+.-+++-||++- ..+-+.+++ +|..|.+.|.-. ..+++.+.||-|+..
T Consensus 90 ~k~~~Dv~laiD~~~~a--~~~d~~vLvSgD~DF-~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l 159 (165)
T 2qip_A 90 AKGDWDVGITLDAIEIA--PDVDRVILVSGDGDF-SLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAI 159 (165)
T ss_dssp CSCCCHHHHHHHHHHHG--GGCSEEEEECCCGGG-HHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEEC
T ss_pred cCCCccHHHHHHHHHhh--ccCCEEEEEECChhH-HHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEec
Confidence 346655 456777653 345666777777744 555555666 598998887633 234889999988854
No 117
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=43.47 E-value=48 Score=29.42 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=43.3
Q ss_pred EEEEEe-cCCCHHHHHHHHHhc-CCeeEEe-cCCCCHHHHHH-hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCC
Q 012256 262 EVDLYG-NGEDFNQIQEAAEKL-KIVVRVY-PGRDHADLIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 262 ~l~i~G-~g~~~~~l~~~~~~~-~~~v~~~-g~~~~~~~~~~-~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
++.|+| .|..-..+.+.+... +..+.-. ..-++.++++. .+|+.|--|..+..---+..|...|+|+|...+|-
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~ 79 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGF 79 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCC
Confidence 577788 376655555555433 3332211 11122335554 78999966566665444556688999999876653
No 118
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=42.75 E-value=96 Score=28.50 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=48.2
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.++++++-+-+ .+.+..++.+++.+.. +...++++. ..|+++..+......-.+.+|+..|++|++-+.
T Consensus 25 ~~~~~l~av~d-~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 95 (331)
T 4hkt_A 25 NADARLVAVAD-AFPAAAEAIAGAYGCE------VRTIDAIEAAADIDAVVICTPTDTHADLIERFARAGKAIFCEKP 95 (331)
T ss_dssp CTTEEEEEEEC-SSHHHHHHHHHHTTCE------ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHhCCC------cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCCcEEEecC
Confidence 46777764444 3445566666666543 355567887 789998887665555667899999999998765
No 119
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=42.10 E-value=64 Score=23.43 Aligned_cols=102 Identities=12% Similarity=-0.021 Sum_probs=57.3
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHH-----cCCeEEEeC
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA-----MGKIVVCAN 332 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma-----~G~PVV~t~ 332 (467)
+++|+.+.+. ...+.+..+..+.++..........+.+.. .|+++.-.. .+.-|..+++.+. ..+|+|...
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 5677776554 445666666666655443322111133332 477665432 3445677777775 456766544
Q ss_pred C-CCc-cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 333 H-PSN-DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 333 ~-g~~-e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
. +.. +.+..+..+++.. +.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 3 222 4444455666665 88899888877654
No 120
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=41.63 E-value=72 Score=29.39 Aligned_cols=122 Identities=7% Similarity=0.047 Sum_probs=69.6
Q ss_pred cCEEEEcC---HhhHHhhh-c-ccccccccCCCccccchhhHHH---hhcCCCCCCceEEEEeccccccCHHHHHHHHHH
Q 012256 182 CHKVIRLS---AATQEYAN-S-IICNVHGVNPKFLEIGKKKKEQ---QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 253 (467)
Q Consensus 182 ~d~vi~~S---~~~~~~~~-~-~i~~i~gvd~~~~~~~~~~~~~---~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~ 253 (467)
+|.++.=. .....+.+ . .+++|||-+-+...|.+..... .+....-....|.|+|-+....=...++.++..
T Consensus 99 ~D~iviR~~~~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~ 178 (310)
T 3csu_A 99 VDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAK 178 (310)
T ss_dssp CSEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSCSSSCEEEEESCTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCChhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCchHHHHHHHHHh
Confidence 58666544 22334433 3 5788898875556665433221 111122235689999975433335555666543
Q ss_pred HHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 254 HQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 254 l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
.+++++.++|.... ...+.+.+++.|..+.+. .+.++.+..+||+.....
T Consensus 179 ----~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvyt~~~ 230 (310)
T 3csu_A 179 ----FDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLH---SSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp ----SSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEC---SCGGGTTTTCSEEEECC-
T ss_pred ----CCCCEEEEECCcccccCHHHHHHHHHcCCeEEEE---cCHHHHhcCCCEEEECCc
Confidence 55789999996322 234555566666554443 344477889998887654
No 121
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=41.53 E-value=81 Score=25.51 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=52.1
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHHH----hc-CeEEecCCCCCCcHHHHHHH----HcCCeEEEeCC---CCcc---
Q 012256 275 IQEAAEKLKIVVRVYPGRDHAD--LIFH----DY-KVFLNPSTTDVVCTTTAEAL----AMGKIVVCANH---PSND--- 337 (467)
Q Consensus 275 l~~~~~~~~~~v~~~g~~~~~~--~~~~----~a-dv~v~ps~~e~~~~~~lEAm----a~G~PVV~t~~---g~~e--- 337 (467)
+++.+.++|..+.+.-.=...+ +.++ .+ .+.++|.-+--.+.++..|+ +.++|+|=--. -.+|
T Consensus 38 l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~FR 117 (151)
T 3u80_A 38 CAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDEFR 117 (151)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC------
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccchh
Confidence 4444555565555542211111 2222 23 57889988888899999994 45999985433 3345
Q ss_pred ---ccccCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 338 ---FFKQFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 338 ---~v~~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
++.+-..|.++- -.+...-++..+++
T Consensus 118 h~S~~s~~a~G~I~G~G~~gY~lAl~~~~~ 147 (151)
T 3u80_A 118 KRSVISPVATGTITGMGFYGYKLALDAVAH 147 (151)
T ss_dssp ---CSCCCCSEEEESSTTHHHHHHHHHHHH
T ss_pred hcccccccceEEEEecChHHHHHHHHHHHH
Confidence 555556677776 66666666665543
No 122
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=41.43 E-value=1.2e+02 Score=23.51 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=59.4
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHH---cCCeEEEeCC
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma---~G~PVV~t~~ 333 (467)
.+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|++++=.. .+.-|+.+++.+. ..+|||....
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 46777766544 334555555555444333222111133333 377665432 3445666666654 4678776655
Q ss_pred -CCc----cccccC-CCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 -PSN----DFFKQF-PNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 -g~~----e~v~~~-~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
... +.+..+ ..+++.. +.+++.++|..++..
T Consensus 95 ~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 95 DPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp CCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 332 345555 5677776 999999999998874
No 123
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=41.22 E-value=2.1e+02 Score=26.23 Aligned_cols=118 Identities=9% Similarity=0.044 Sum_probs=68.4
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHHH---hhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=.. ....+.+ ..+++|||-+. ...|.+..... .+....-....|.|+|-. ..=...++.++..+
T Consensus 102 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~--~rva~Sl~~~~~~~ 178 (315)
T 1pvv_A 102 VDAIMARVYDHKDVEDLAKYATVPVINGLSD-FSHPCQALADYMTIWEKKGTIKGVKVVYVGDG--NNVAHSLMIAGTKL 178 (315)
T ss_dssp CSEEEEECSSHHHHHHHHHHCSSCEEEEECS-SCCHHHHHHHHHHHHHHHSCCTTCEEEEESCC--CHHHHHHHHHHHHT
T ss_pred CcEEEEecCchHHHHHHHHhCCCCEEcCCCC-CCCcHHHHHHHHHHHHHhCCcCCcEEEEECCC--cchHHHHHHHHHHC
Confidence 687766552 2333332 35788898774 66665433221 111122235689999986 22245555555543
Q ss_pred HhhcCCeEEEEEecCCC--HHH----HHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
++++.++|+... ... +++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 179 -----g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~---~d~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 179 -----GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELL---HDPVKAVKDADVIYTDVW 232 (315)
T ss_dssp -----TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred -----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhCCCCEEEEcce
Confidence 689999996322 122 344445666555544 455688999999987654
No 124
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=40.83 E-value=20 Score=32.61 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=17.9
Q ss_pred CCCceEEEEEeccCCccccccchhHHH-H-HHhhhcC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFR-A-AYLAKDG 37 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~-~-~~L~~~G 37 (467)
|+.|||+||... |...+ -...+.. + +.|.+.|
T Consensus 20 m~~MKiLII~aH--P~~~S-~n~aL~~~~~~~l~~~G 53 (280)
T 4gi5_A 20 FQSMKVLLIYAH--PEPRS-LNGALKNFAIRHLQQAG 53 (280)
T ss_dssp --CCEEEEEECC--SCTTS-HHHHHHHHHHHHHHHTT
T ss_pred hhCCeEEEEEeC--CCCcc-HHHHHHHHHHHHHHHCC
Confidence 333449999876 44333 1122333 3 8899999
No 125
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=40.62 E-value=1.1e+02 Score=28.04 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=70.4
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHH---HhhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKE---QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~---~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=.. ....+.+ ..+++|||-+.+...|.+.... ..+....-....|.|+|-+....=...++.++..
T Consensus 97 ~D~iviR~~~~~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD~~~~rva~Sl~~~~~~- 175 (306)
T 4ekn_B 97 ADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSL- 175 (306)
T ss_dssp CSEEEEECSSTTHHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTTCHHHHHHHHHHHT-
T ss_pred CcEEEEEcCChHHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcCCCCCcHHHHHHHHHHh-
Confidence 486666542 2333332 4678889887666777554322 1122222236689999976433334455555543
Q ss_pred HhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
.+++++.++++... .+.+.+.+++.|..+.+. .+.++.+..|||+.....
T Consensus 176 ---~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvy~~~~ 227 (306)
T 4ekn_B 176 ---FENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEK---ESLDDLDDDIDVLYVTRI 227 (306)
T ss_dssp ---SSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEE---SCGGGCCTTCSEEEECCC
T ss_pred ---cCCCEEEEECCcccccCHHHHHHHHHcCCEEEEE---cCHHHHhcCCCEEEeCCc
Confidence 44789999996322 245555566666555444 233467889998886543
No 126
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=40.55 E-value=19 Score=32.87 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=53.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCCC-CHH-HHHHhcCeEEecCCCCCC
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRD-HAD-LIFHDYKVFLNPSTTDVV 314 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~~-~~~-~~~~~adv~v~ps~~e~~ 314 (467)
.|=...|.+|+..+..-...-+++++|..+. .+.+++.++..+. +-+++|+.- ... .-++.=|+++.....+.
T Consensus 52 ~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e- 130 (295)
T 2zkq_b 52 KRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD- 130 (295)
T ss_dssp HHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcc-
Confidence 4445556666666552122345888897655 3446666777665 235666542 222 22334466665532222
Q ss_pred cHHHHHHHHcCCeEEEeCC
Q 012256 315 CTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 315 ~~~~lEAma~G~PVV~t~~ 333 (467)
-.++.||.-.|.|||+--.
T Consensus 131 ~~AI~EA~~lgIPvIalvD 149 (295)
T 2zkq_b 131 HQPLTEASYVNLPTIALCN 149 (295)
T ss_dssp HHHHHHHHHHTCCEEEEEC
T ss_pred hhHHHHHHHhCCCEEEEec
Confidence 4689999999999998644
No 127
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=40.54 E-value=1.4e+02 Score=29.49 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=58.2
Q ss_pred ccCHHHHHHHHHH-HHhh--------cCCeEEEEEec---CCCHHHHHHHHHhcCCeeEE--ecCCCCHH-HHHHhcCeE
Q 012256 241 SKGYKELLELLDD-HQKE--------LAGLEVDLYGN---GEDFNQIQEAAEKLKIVVRV--YPGRDHAD-LIFHDYKVF 305 (467)
Q Consensus 241 ~Kg~~~li~a~~~-l~~~--------~~~~~l~i~G~---g~~~~~l~~~~~~~~~~v~~--~g~~~~~~-~~~~~adv~ 305 (467)
..|.+..++++-. +... ..+-.+-|+|+ ..+..+++++.++.|+++.. .|+-...+ .-+..|++-
T Consensus 192 ~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNIiG~~~~~gD~~eik~lL~~~Gi~v~~~~~g~~t~~ei~~~~~A~~n 271 (492)
T 3u7q_A 192 SLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTPKVKLN 271 (492)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCCCTTEEEEEEECCBTTTTHHHHHHHHHTTCEEEEEEETTCCHHHHHHGGGCSEE
T ss_pred hHHHHHHHHHHHHHHhhhcccccccCCCCCcEEEECCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhhcCcEE
Confidence 4567777777655 3321 12346788883 34568899999999997763 35555555 666677776
Q ss_pred EecCCCCCCcHHHHHHH--HcCCeEEEeC
Q 012256 306 LNPSTTDVVCTTTAEAL--AMGKIVVCAN 332 (467)
Q Consensus 306 v~ps~~e~~~~~~lEAm--a~G~PVV~t~ 332 (467)
+.... .++..+.+.| -+|.|.+...
T Consensus 272 iv~~~--~~~~~~A~~Le~~~GiP~i~~~ 298 (492)
T 3u7q_A 272 LVHCY--RSMNYISRHMEEKYGIPWMEYN 298 (492)
T ss_dssp EESCH--HHHHHHHHHHHHHHCCCEEECC
T ss_pred EEECh--HHHHHHHHHHHHHhCCceEecC
Confidence 65421 2355677776 4799999765
No 128
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=39.67 E-value=18 Score=34.72 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=22.1
Q ss_pred EEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEee
Q 012256 8 IAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIP 46 (467)
Q Consensus 8 I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p 46 (467)
|++++... ++.++++..+ +.|+++| |+|+++++
T Consensus 3 Il~~~~~~-----~GH~~p~l~la~~L~~~G-h~V~~~~~ 36 (416)
T 1rrv_A 3 VLLSVCGT-----RGDVEIGVALADRLKALG-VQTRMCAP 36 (416)
T ss_dssp EEEEEESC-----HHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred EEEEecCC-----CccHHHHHHHHHHHHHCC-CeEEEEeC
Confidence 98885442 4477777765 9999999 44444443
No 129
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=39.41 E-value=1.3e+02 Score=23.02 Aligned_cols=105 Identities=9% Similarity=0.002 Sum_probs=62.5
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCC--eeEEecCCCCHHHHHH------------hcCeEEecCC-CCCCcHHHHHHHH
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFH------------DYKVFLNPST-TDVVCTTTAEALA 323 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~------------~adv~v~ps~-~e~~~~~~lEAma 323 (467)
..+++|+.+.+. ...+.+..+..+. .+.........-+.+. ..|+++.=.. .+.-|+.+++.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 356777776554 4456666666665 3433333222224444 3477765432 3445677777775
Q ss_pred -----cCCeEEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 324 -----MGKIVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 324 -----~G~PVV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
..+|||.... ... +.+..+..+++.. +.+++.++|..++..
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 4567665544 332 3555667787776 999999999888764
No 130
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=39.13 E-value=1.2e+02 Score=22.58 Aligned_cols=102 Identities=12% Similarity=0.046 Sum_probs=61.6
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHHh--cCeEEecC-CCCCCcHHHHHHHH---cCCeEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPS-TTDVVCTTTAEALA---MGKIVV 329 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~--adv~v~ps-~~e~~~~~~lEAma---~G~PVV 329 (467)
+.+++|+.+.+. ...+.......+..+... ...+ +.+.. .|+++.=. ....-|..+++.+. ..+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~---~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMH---QSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEE---SCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEe---CCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 456788887665 344666666666554433 2233 33333 36666432 22334666666664 356776
Q ss_pred EeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 330 CANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 330 ~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.... ... +.+..+..+++.. +.+++.+++..++..
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 5443 332 4556677788876 999999999998764
No 131
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=39.09 E-value=1.2e+02 Score=22.67 Aligned_cols=106 Identities=6% Similarity=0.009 Sum_probs=62.8
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHHc-----CCeEEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALAM-----GKIVVC 330 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma~-----G~PVV~ 330 (467)
..+++|+.+.+. ...+.+..++.+..+.........-+.+.. .|+++.-. ..+.-|..+++.+-. ..|||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEE
Confidence 457788876555 445666666666655443322211133332 37766543 334567788887753 356666
Q ss_pred eCCCCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 331 ANHPSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 331 t~~g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
+..... +.+..+..+++.. +.+++.++|.+.....
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 86 VSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp ECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 655321 4556677777776 9999999999877653
No 132
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=38.95 E-value=1.3e+02 Score=23.12 Aligned_cols=105 Identities=10% Similarity=-0.026 Sum_probs=60.0
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHH-------cCCeE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA-------MGKIV 328 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma-------~G~PV 328 (467)
..+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|++++=- ..+.-|+.+++.+- -.+||
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pi 93 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPV 93 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeE
Confidence 467888887655 445666666666555443221111144443 47777532 23445777777764 12577
Q ss_pred EEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 329 VCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 329 V~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
|.... ... +....+..+++.. +.+++.++|..+...
T Consensus 94 i~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 94 VVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 66544 332 3455677788876 999999999987654
No 133
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=38.89 E-value=16 Score=35.03 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=23.0
Q ss_pred EEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEee
Q 012256 8 IAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIP 46 (467)
Q Consensus 8 I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p 46 (467)
|++++.. +++.++++..+ +.|+++| |+|+++.+
T Consensus 3 Il~~~~~-----~~GHv~P~l~la~~L~~~G-h~V~~~~~ 36 (415)
T 1iir_A 3 VLLATCG-----SRGDTEPLVALAVRVRDLG-ADVRMCAP 36 (415)
T ss_dssp EEEECCS-----CHHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred EEEEcCC-----CchhHHHHHHHHHHHHHCC-CeEEEEcC
Confidence 9887432 34477887766 9999999 55555554
No 134
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=38.86 E-value=1.3e+02 Score=27.92 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=58.1
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v 306 (467)
+..+.++|--.-.+ ..++++ .+..++++++-+-+.. .+..++.+++++.....+ ...++++.. .|+++
T Consensus 23 ~~rvgiIG~G~~g~---~~~~~l---~~~~~~~~lvav~d~~-~~~~~~~a~~~g~~~~~~---~~~~~ll~~~~~D~V~ 92 (357)
T 3ec7_A 23 TLKAGIVGIGMIGS---DHLRRL---ANTVSGVEVVAVCDIV-AGRAQAALDKYAIEAKDY---NDYHDLINDKDVEVVI 92 (357)
T ss_dssp CEEEEEECCSHHHH---HHHHHH---HHTCTTEEEEEEECSS-TTHHHHHHHHHTCCCEEE---SSHHHHHHCTTCCEEE
T ss_pred eeeEEEECCcHHHH---HHHHHH---HhhCCCcEEEEEEeCC-HHHHHHHHHHhCCCCeee---CCHHHHhcCCCCCEEE
Confidence 44677877522111 233333 2235778777555433 245566666666433332 344577774 79999
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..+....-.-.+.+|+..|++|++-+.
T Consensus 93 i~tp~~~h~~~~~~al~aGk~Vl~EKP 119 (357)
T 3ec7_A 93 ITASNEAHADVAVAALNANKYVFCEKP 119 (357)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred EcCCcHHHHHHHHHHHHCCCCEEeecC
Confidence 887666556668899999999998775
No 135
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.75 E-value=30 Score=31.58 Aligned_cols=93 Identities=9% Similarity=-0.031 Sum_probs=54.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCCCCHH--HHHHhcCeEEecCCCCC
Q 012256 240 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~~~~~--~~~~~adv~v~ps~~e~ 313 (467)
-.|=...|..|+..+..-...-+++++|.... .+.+.+.++..+. +-+|+|+.--.. ..++.=|++|.....+
T Consensus 55 L~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~- 133 (305)
T 3iz6_A 55 LGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT- 133 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCccc-
Confidence 34445566666665543222345788997655 3346666766664 335666542222 2233446666653221
Q ss_pred CcHHHHHHHHcCCeEEEeCC
Q 012256 314 VCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~ 333 (467)
=-.++.||.-.|+|+|+--.
T Consensus 134 d~qAI~EA~~lnIPtIALvD 153 (305)
T 3iz6_A 134 DHQPIKESALGNIPTIAFCD 153 (305)
T ss_dssp THHHHHHHHHHTCCEEEEEC
T ss_pred chHHHHHHHHcCCCEEEEEc
Confidence 24678999999999997443
No 136
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=38.36 E-value=1.3e+02 Score=22.86 Aligned_cols=105 Identities=9% Similarity=-0.002 Sum_probs=60.8
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHHc--CCeEEEeCC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM--GKIVVCANH 333 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma~--G~PVV~t~~ 333 (467)
..+++|+.+.+. ...+.......+..+.........-+++.. .|+++.=.. .+.-|+.+++.+.. .+|||.-..
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 457788887655 344666666555554332221111133333 477765322 23346677777643 567765433
Q ss_pred -CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 -g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
... +.+..+..+++.. +.+++.+++..++..
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 84 INEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp CCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 332 4556677788776 999999999887754
No 137
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=38.08 E-value=81 Score=25.88 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=25.0
Q ss_pred HHHHhcCeEEecCC----CCCCcHHHHH---HHHcCCeEEEeCC
Q 012256 297 LIFHDYKVFLNPST----TDVVCTTTAE---ALAMGKIVVCANH 333 (467)
Q Consensus 297 ~~~~~adv~v~ps~----~e~~~~~~lE---Ama~G~PVV~t~~ 333 (467)
+.++.||++|.--. .+.=+.+..| |.|.|+|||+-..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 88999999875411 1223335555 6899999999554
No 138
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=37.68 E-value=37 Score=27.65 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=38.8
Q ss_pred HHHHhcCeEEecCC--CCCCcHHHHHHHHcCCeEEE-eCCC--C-cc-ccccCCC---EEeeC--CHHHHHHHHHHHHhc
Q 012256 297 LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVC-ANHP--S-ND-FFKQFPN---CRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 297 ~~~~~adv~v~ps~--~e~~~~~~lEAma~G~PVV~-t~~g--~-~e-~v~~~~~---g~~~~--~~~~l~~~i~~~l~~ 364 (467)
+.++.||++|.--. ..|.+.-+-=|.|.|+||++ ++.. . .. .+....+ -.+.+ + +++.+.|.+.++.
T Consensus 64 ~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~~ 142 (152)
T 4fyk_A 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFEA 142 (152)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC-
T ss_pred HHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHHh
Confidence 88999999986422 12333345557899999999 4422 1 11 2222222 22333 5 7777777777654
No 139
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=37.64 E-value=1.3e+02 Score=22.58 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=51.8
Q ss_pred EEEEecCCC----HHHHHHHHHhcCCeeEEe-cCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHH--cCCeEEEeCCCC
Q 012256 263 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPS 335 (467)
Q Consensus 263 l~i~G~g~~----~~~l~~~~~~~~~~v~~~-g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma--~G~PVV~t~~g~ 335 (467)
++++|.|-. .+.+++.+++.++++.+. -.+...+..+..+|+++........ ..-++..+ .++||+.-+.-
T Consensus 8 lvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~I~~~- 85 (109)
T 2l2q_A 8 LLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEIINTI- 85 (109)
T ss_dssp EEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEECCHH-
T ss_pred EEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCCCEEEEChH-
Confidence 445555443 456777777888765554 3444444567889998877544322 33444443 58999765431
Q ss_pred ccccccCCCEEeeCCHHHHHHHHHHHHhc
Q 012256 336 NDFFKQFPNCRTYDDRNGFVEATLKALAE 364 (467)
Q Consensus 336 ~e~v~~~~~g~~~~~~~~l~~~i~~~l~~ 364 (467)
.+. .-|.+++.+.+.+++..
T Consensus 86 -~y~--------~~d~~~vl~~i~~~l~~ 105 (109)
T 2l2q_A 86 -DYG--------TMNGEKVLQLAINAFNN 105 (109)
T ss_dssp -HHH--------HTCHHHHHHHHHHHHHH
T ss_pred -Hhc--------cCCHHHHHHHHHHHHhc
Confidence 110 01566666666666653
No 140
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=36.84 E-value=1.2e+02 Score=28.20 Aligned_cols=70 Identities=9% Similarity=0.118 Sum_probs=47.8
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.++++++-+-+ .+.+..++.+++.+.. .+...++++. ..|+++..+....-.-.+.+|+..|++|++-+.
T Consensus 27 ~~~~~lvav~d-~~~~~~~~~~~~~g~~-----~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (354)
T 3db2_A 27 SEKLKLVTCYS-RTEDKREKFGKRYNCA-----GDATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKP 98 (354)
T ss_dssp CSSEEEEEEEC-SSHHHHHHHHHHHTCC-----CCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESS
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHcCCC-----CcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEEccC
Confidence 46777664444 3445566666666543 2455557884 479988887666656667899999999998775
No 141
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=36.73 E-value=1.5e+02 Score=22.99 Aligned_cols=107 Identities=14% Similarity=-0.000 Sum_probs=62.1
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHH--hcCeEEecC-CCCCCcHHHHHHHHc---CCeE
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPS-TTDVVCTTTAEALAM---GKIV 328 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~--~adv~v~ps-~~e~~~~~~lEAma~---G~PV 328 (467)
+..+++|+.+.+. ...+.+...+.+.. .+.......+ +.+. ..|+++.=. ..+.-|+.+++.+.. .+||
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 4567777776554 34455555555522 2222222222 3332 247766542 334456677766643 5667
Q ss_pred EEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 329 VCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 329 V~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
|.... ... +.+..+..+++.. +.+++.++|..++....
T Consensus 93 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred EEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 65444 332 4556677788876 99999999999988643
No 142
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=36.64 E-value=1.3e+02 Score=22.48 Aligned_cols=106 Identities=12% Similarity=-0.001 Sum_probs=63.6
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeE-EecCCCCHHHHHH--hcCeEEecC-CCCCCcHHHHHHHH---cCCeEEEeC
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVR-VYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALA---MGKIVVCAN 332 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~-~~g~~~~~~~~~~--~adv~v~ps-~~e~~~~~~lEAma---~G~PVV~t~ 332 (467)
++++|+.+.+. ...+.+..++.+..+. ........-+.+. ..|+++.-. ..+.-|+.+++.+- ...|||...
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 46777776554 4556666666665443 2333333333333 347776543 23455677777664 356666544
Q ss_pred C-CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhcCC
Q 012256 333 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 366 (467)
Q Consensus 333 ~-g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 366 (467)
. .. .+.+..+..+++.. +.+++.++|..++....
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred CCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 3 32 24556677787776 99999999999987644
No 143
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=36.42 E-value=26 Score=27.90 Aligned_cols=30 Identities=17% Similarity=-0.030 Sum_probs=18.1
Q ss_pred eEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
|++|+.+.. |+.+-.+.+.+..+..+...|
T Consensus 7 k~~ivv~~~-P~g~~~~~~al~~a~a~~a~~ 36 (136)
T 2hy5_B 7 KFMYLNRKA-PYGTIYAWEALEVVLIGAAFD 36 (136)
T ss_dssp EEEEEECSC-TTTSSHHHHHHHHHHHHGGGC
T ss_pred EEEEEEeCC-CCCcHHHHHHHHHHHHHHhCC
Confidence 488888665 664332333344457777788
No 144
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=36.22 E-value=31 Score=30.53 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=53.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCCH-HHHHHHHHhcCCe-e---EEecCC-CCHH-HHHHhcCeEEecCCCCC
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGEDF-NQIQEAAEKLKIV-V---RVYPGR-DHAD-LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~-~~l~~~~~~~~~~-v---~~~g~~-~~~~-~~~~~adv~v~ps~~e~ 313 (467)
.|=...|.+|+..+..-...-+++++|..+.- ..+.+.++..|.. + +++|+. .... ..++.=|+++..... .
T Consensus 47 ~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~-~ 125 (241)
T 2xzm_B 47 EETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPR-S 125 (241)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTT-T
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCC-c
Confidence 44455555566555542123457889976553 3466666666642 3 577664 2222 333344666655322 2
Q ss_pred CcHHHHHHHHcCCeEEEeCC
Q 012256 314 VCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~~ 333 (467)
=-.++.||.-.|.|||+--.
T Consensus 126 e~~ai~EA~~l~IPvIalvD 145 (241)
T 2xzm_B 126 DFQAIKEASYVNIPVIALCD 145 (241)
T ss_dssp THHHHHHHTTTTCCEEECCC
T ss_pred chHHHHHHHHhCCCEEEEec
Confidence 24689999999999998654
No 145
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=35.98 E-value=2.6e+02 Score=25.60 Aligned_cols=119 Identities=10% Similarity=-0.005 Sum_probs=68.0
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHHH---hhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=.. ....+.+ ..+++|||-+ +...|.+..... .+....-....|.|+|-. ...=...++.++..+
T Consensus 95 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~-~~rva~Sl~~~~~~~ 172 (307)
T 2i6u_A 95 VDAIVWRTFGQERLDAMASVATVPVINALS-DEFHPCQVLADLQTIAERKGALRGLRLSYFGDG-ANNMAHSLLLGGVTA 172 (307)
T ss_dssp EEEEEEECSSHHHHHHHHHHCSSCEEESCC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCT-TSHHHHHHHHHHHHT
T ss_pred CCEEEEecCChhHHHHHHhhCCCCEEcCCC-CCcCccHHHHHHHHHHHHhCCcCCeEEEEECCC-CcCcHHHHHHHHHHC
Confidence 486666552 2333332 3578889775 566665433221 111122235689999986 222245555565543
Q ss_pred HhhcCCeEEEEEecCCC--HHH----HHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
++++.++|+... ... +++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 173 -----g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~---~d~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 173 -----GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVT---ADAHAAAAGADVLVTDTW 226 (307)
T ss_dssp -----TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCS
T ss_pred -----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---ECHHHHhcCCCEEEecce
Confidence 689999996322 122 344445666555544 455588999999987644
No 146
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=35.93 E-value=80 Score=25.36 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHH----hc-CeEEecCCCCCCcHHHHHHHH-cCCeEEEeCC---CCcc-----
Q 012256 274 QIQEAAEKLKIVVRVYPGRDHAD--LIFH----DY-KVFLNPSTTDVVCTTTAEALA-MGKIVVCANH---PSND----- 337 (467)
Q Consensus 274 ~l~~~~~~~~~~v~~~g~~~~~~--~~~~----~a-dv~v~ps~~e~~~~~~lEAma-~G~PVV~t~~---g~~e----- 337 (467)
.+++.+++++..+.++-.=...+ +.++ .+ .+.++|.-+--.+.++..|++ .++|+|=--. -.+|
T Consensus 35 ~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~ 114 (146)
T 1h05_A 35 LIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRH 114 (146)
T ss_dssp HHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGSCGGGGC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCcccccccccc
Confidence 35555666676666653222222 2233 23 578899877778999999975 5789885433 2344
Q ss_pred -ccccCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 338 -FFKQFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 338 -~v~~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
++.+-..|.++- -.+...-++..++.
T Consensus 115 S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 142 (146)
T 1h05_A 115 SYLSPIATGVIVGLGIQGYLLALRYLAE 142 (146)
T ss_dssp CSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccceeEEEEecCHHHHHHHHHHHHH
Confidence 444456677776 67777777776654
No 147
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=35.90 E-value=1.4e+02 Score=22.39 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=63.0
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCe-eEEecCCCCHHHHHH---hcCeEEec-CCCCCCcHHHHHHHHc-----CCeE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIV-VRVYPGRDHADLIFH---DYKVFLNP-STTDVVCTTTAEALAM-----GKIV 328 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~-v~~~g~~~~~~~~~~---~adv~v~p-s~~e~~~~~~lEAma~-----G~PV 328 (467)
..+++|+.+.+. ...+.+..+..+.. +.........-+.+. ..|+++.= ...+.-|+.+++.+-. .+||
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pi 84 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPI 84 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeE
Confidence 356788877654 44566666666653 332221111113332 35777643 2334567888887753 5677
Q ss_pred EEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 329 VCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 329 V~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
|.... ... +.+..+..+++.. +++++.++|..++..
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 85 IMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 76544 432 3556677788876 999999999998864
No 148
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=35.84 E-value=92 Score=23.57 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=43.4
Q ss_pred EEEEecCCC----HHHHHHHHHhcCCeeEEec-CCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHc--CCeEEEeCC
Q 012256 263 VDLYGNGED----FNQIQEAAEKLKIVVRVYP-GRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAM--GKIVVCANH 333 (467)
Q Consensus 263 l~i~G~g~~----~~~l~~~~~~~~~~v~~~g-~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~--G~PVV~t~~ 333 (467)
+++++.|-. -..+++.+++.++++.+.. .....++.+..+|++++.... .+-..=++..+- |+||...+.
T Consensus 10 lL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV-~y~~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 10 LVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV-RSYYREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGG-GGGHHHHHHHHTTTTCEEEECCH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHH-HHHHHHHHHHhhhcCCcEEEeCH
Confidence 455555543 2457777888888888753 333344667889999875322 233344555554 889887653
No 149
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=35.63 E-value=1e+02 Score=28.55 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=59.6
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEe
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLN 307 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ 307 (467)
..+..+|--.- |-..++.++.. .|+++++-+-+. +.+..++.+++++.. +. +.+.++++.. .|+++.
T Consensus 24 irigiIG~G~i--g~~~~~~~~~~----~~~~~lvav~d~-~~~~a~~~a~~~g~~-~~---y~d~~ell~~~~iDaV~I 92 (350)
T 4had_A 24 LRFGIISTAKI--GRDNVVPAIQD----AENCVVTAIASR-DLTRAREMADRFSVP-HA---FGSYEEMLASDVIDAVYI 92 (350)
T ss_dssp EEEEEESCCHH--HHHTHHHHHHH----CSSEEEEEEECS-SHHHHHHHHHHHTCS-EE---ESSHHHHHHCSSCSEEEE
T ss_pred cEEEEEcChHH--HHHHHHHHHHh----CCCeEEEEEECC-CHHHHHHHHHHcCCC-ee---eCCHHHHhcCCCCCEEEE
Confidence 45677764211 11223444433 578887765553 456677778887753 11 2445578865 488888
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.+....-.-.+.+|+..|++|++=+.
T Consensus 93 ~tP~~~H~~~~~~al~aGkhVl~EKP 118 (350)
T 4had_A 93 PLPTSQHIEWSIKAADAGKHVVCEKP 118 (350)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred eCCCchhHHHHHHHHhcCCEEEEeCC
Confidence 87666555668999999999999776
No 150
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=35.40 E-value=1.5e+02 Score=22.58 Aligned_cols=106 Identities=8% Similarity=-0.102 Sum_probs=63.6
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCC--eeEEecCCCCHHHHHHh-------cCeEEecCC-CCCCcHHHHHHHHc----
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFHD-------YKVFLNPST-TDVVCTTTAEALAM---- 324 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~-------adv~v~ps~-~e~~~~~~lEAma~---- 324 (467)
..+++|+.+.+. ...+.......+. .+.........-+.+.. .|+++.=.. .+.-|+.+++.+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 467888887655 3446666666665 33322222221145544 587776433 35567777777654
Q ss_pred ---CCeEEEeCC-CCc----cccccC-CCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 325 ---GKIVVCANH-PSN----DFFKQF-PNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 325 ---G~PVV~t~~-g~~----e~v~~~-~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
.+|||.... ... +.+..+ ..+++.. +.+++.++|.+.....
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 567766554 332 344455 6677776 9999999999987754
No 151
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=35.39 E-value=1.4e+02 Score=22.50 Aligned_cols=106 Identities=10% Similarity=-0.051 Sum_probs=59.4
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh---cCeEEecCC-CCCCcHHHHHHHHc---CCeEEE
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNPST-TDVVCTTTAEALAM---GKIVVC 330 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~---adv~v~ps~-~e~~~~~~lEAma~---G~PVV~ 330 (467)
+..+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=.. .+.-|+.+++.+.. .+|||.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ 93 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLI 93 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 4577888887655 345666666666554433222111133333 577765432 23456777777753 577766
Q ss_pred eC-C-CCccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 331 AN-H-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 331 t~-~-g~~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. . ...+.......+++.. +.+++.++|..++..
T Consensus 94 ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 94 LTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred EECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 54 3 3222211114556665 999999999887664
No 152
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=35.29 E-value=1.5e+02 Score=22.86 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=60.5
Q ss_pred CeEEEEEecCCC-HHHHHHHHHh-cCCeeEEecCCCCHH---HHHHh--cCeEEecCC-CCCCcHHHHHHHH---cCCeE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEK-LKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIV 328 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~-~~~~v~~~g~~~~~~---~~~~~--adv~v~ps~-~e~~~~~~lEAma---~G~PV 328 (467)
..+++|+.+.+. ...+....+. .+.. +.+.....+ +.+.. .|+++.=.. .+.-|..+++.+. ..+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~--v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYA--VVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEE--EEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcE--EEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 467788876654 3345555544 3333 333333333 33333 377765422 3345666666654 35677
Q ss_pred EEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 329 VCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 329 V~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
|.... ... +.+..+..+++.. +.+++.++|..++...
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 66443 332 3556677787776 9999999999988764
No 153
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=35.27 E-value=2.9e+02 Score=25.94 Aligned_cols=119 Identities=13% Similarity=-0.014 Sum_probs=68.4
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHHH---hhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=.. ....+.+ ..+++|||-+ +...|.+..... .+....-....|.|+|-. ...=...++.++..+
T Consensus 123 ~D~IviR~~~~~~~~~lA~~s~vPVINa~~-~~~HPtQaLaDl~Ti~E~~g~l~gl~va~vGD~-~~rva~Sl~~~~~~l 200 (359)
T 2w37_A 123 FDGIEFRGFKQSDAEILARDSGVPVWNGLT-DEWHPTQMLADFMTVKENFGKLQGLTLTFMGDG-RNNVANSLLVTGAIL 200 (359)
T ss_dssp CSEEEEESSCHHHHHHHHHHSSSCEEEEEC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCT-TSHHHHHHHHHHHHH
T ss_pred cCEEEEecCChHHHHHHHHhCCCCEEcCCC-CCCCccHHHHHHHHHHHHhCCcCCeEEEEECCC-ccchHHHHHHHHHHc
Confidence 587666552 2333332 3578889776 566665433221 111122235689999986 222244555555543
Q ss_pred HhhcCCeEEEEEecC---CCH---HHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNG---EDF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g---~~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
++++.++|.. ++. +.+++.+++.|..+.+. .+.++.+..|||+....+
T Consensus 201 -----G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 201 -----GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVIT---DDLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp -----TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCS
T ss_pred -----CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhcCCCEEEEccc
Confidence 5789999963 221 22344455666555554 445588999999887654
No 154
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=35.03 E-value=24 Score=34.84 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=25.6
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhc-CCccEEEEeee
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKD-GETRVTLVIPW 47 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~-G~~~V~~~~p~ 47 (467)
+||++++.- ..+.++++..+ +.|+++ | |+||++++.
T Consensus 7 ~~vl~~p~p-----~~GHv~P~l~La~~L~~r~G-h~Vt~~t~~ 44 (480)
T 2vch_A 7 PHVAIIPSP-----GMGHLIPLVEFAKRLVHLHG-LTVTFVIAG 44 (480)
T ss_dssp CEEEEECCS-----CHHHHHHHHHHHHHHHHHHC-CEEEEEECC
T ss_pred cEEEEecCc-----chhHHHHHHHHHHHHHhCCC-CEEEEEECC
Confidence 468777422 23377887776 999998 9 788887765
No 155
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=34.86 E-value=39 Score=28.84 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=39.3
Q ss_pred HHHHhcCeEEecCCCCCCcH--HHHHHHHcCCeEEEeCC-CC-cccc----ccC-------CCE-EeeCCHHHHHHHHHH
Q 012256 297 LIFHDYKVFLNPSTTDVVCT--TTAEALAMGKIVVCANH-PS-NDFF----KQF-------PNC-RTYDDRNGFVEATLK 360 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~--~~lEAma~G~PVV~t~~-g~-~e~v----~~~-------~~g-~~~~~~~~l~~~i~~ 360 (467)
-+...||.||... -++|. .+.||+..|+||+.-+. |. .+.+ .++ ... .+++|++++.+.|.+
T Consensus 114 ~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~ 191 (195)
T 1rcu_A 114 VLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191 (195)
T ss_dssp HHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHT
T ss_pred HHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 5556778887542 23443 57889999999999976 43 1222 111 112 345599999888765
No 156
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=34.80 E-value=84 Score=29.42 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=59.5
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhh---cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cC
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKE---LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YK 303 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~---~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--ad 303 (467)
+..|..+|--.-.+. -++++..+..- ..+.+++-+-+ .+.+..++.+++++.. .+ ..+.++++.. .|
T Consensus 6 klrvgiIG~G~ig~~---h~~~~~~~~~~~~~~~~~~l~av~d-~~~~~a~~~a~~~g~~-~~---~~d~~~ll~~~~iD 77 (390)
T 4h3v_A 6 NLGIGLIGYAFMGAA---HSQAWRSAPRFFDLPLHPDLNVLCG-RDAEAVRAAAGKLGWS-TT---ETDWRTLLERDDVQ 77 (390)
T ss_dssp EEEEEEECHHHHHHH---HHHHHHHHHHHSCCSSEEEEEEEEC-SSHHHHHHHHHHHTCS-EE---ESCHHHHTTCTTCS
T ss_pred cCcEEEEcCCHHHHH---HHHHHHhCccccccccCceEEEEEc-CCHHHHHHHHHHcCCC-cc---cCCHHHHhcCCCCC
Confidence 345677764222222 34444444321 12345555554 3456777778887753 22 2344577765 58
Q ss_pred eEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 304 VFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+++..+....-.-.+++|+..|++|++=+.
T Consensus 78 aV~I~tP~~~H~~~~~~al~aGkhVl~EKP 107 (390)
T 4h3v_A 78 LVDVCTPGDSHAEIAIAALEAGKHVLCEKP 107 (390)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred EEEEeCChHHHHHHHHHHHHcCCCceeecC
Confidence 888887666666678999999999999887
No 157
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=34.76 E-value=85 Score=23.92 Aligned_cols=103 Identities=9% Similarity=0.031 Sum_probs=61.8
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH-----hcCeEEecC-CCC--CCcHHHHHHHHc---CCe
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH-----DYKVFLNPS-TTD--VVCTTTAEALAM---GKI 327 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~-----~adv~v~ps-~~e--~~~~~~lEAma~---G~P 327 (467)
..+++|+.+.+. ...+.+..+..+..+.... ..++.+. ..|+++.=. ..+ .-|+.+++.+.. .+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFA---SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEES---SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC---CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 357888887655 4446666666665554332 2232222 236666532 234 456667766643 567
Q ss_pred EEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 328 VVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 328 VV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
||.-.. ... +.+..+..+++.. +.+++.++|.+++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 765544 332 4556677788876 9999999999988754
No 158
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=34.73 E-value=24 Score=34.69 Aligned_cols=36 Identities=6% Similarity=-0.043 Sum_probs=26.1
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhc--CCccEEEEeee
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKD--GETRVTLVIPW 47 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~--G~~~V~~~~p~ 47 (467)
+||++++ +.+.+.++++..+ +.|+++ | ++||++++.
T Consensus 10 ~~vv~~p-----~p~~GHi~P~l~La~~L~~r~pG-~~Vt~v~t~ 48 (463)
T 2acv_A 10 SELIFIP-----APGIGHLASALEFAKLLTNHDKN-LYITVFCIK 48 (463)
T ss_dssp EEEEEEC-----CSSTTTHHHHHHHHHHHHHTCTT-EEEEEEECC
T ss_pred CEEEEEc-----CcccchHHHHHHHHHHHHhcCCC-cEEEEEEcC
Confidence 4787773 3345588998876 999998 8 777777654
No 159
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=34.55 E-value=2.8e+02 Score=25.68 Aligned_cols=119 Identities=11% Similarity=0.063 Sum_probs=68.8
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHH---HhhcCC-CCCCceEEEEeccccccCHHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKE---QQQNGT-HAFAKGAYYIGKMVWSKGYKELLELLDD 253 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~---~~~~~~-~~~~~~il~vGrl~~~Kg~~~li~a~~~ 253 (467)
+|.++.=.. ....+.+ ..++++||-+ +...|.+.... ..+... .-....+.|+|-. ...=...++.++..
T Consensus 101 ~D~IviR~~~~~~~~~lA~~s~vPVINa~~-~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~-~~~va~Sl~~~~~~ 178 (335)
T 1dxh_A 101 YDAIEYRGFKQEIVEELAKFAGVPVFNGLT-DEYHPTQMLADVLTMREHSDKPLHDISYAYLGDA-RNNMGNSLLLIGAK 178 (335)
T ss_dssp CSEEEEECSCHHHHHHHHHHSSSCEEEEEC-SSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCC-SSHHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHhCCCCEEcCCC-CCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCC-ccchHHHHHHHHHH
Confidence 587666552 2333432 3578889876 56666554332 122222 2235689999985 22223445555544
Q ss_pred HHhhcCCeEEEEEecC---CCH---HHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 254 HQKELAGLEVDLYGNG---EDF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 254 l~~~~~~~~l~i~G~g---~~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
. ++++.++|+. ++. +.+++.+++.|..+.+. .+.++.+..+||+....+
T Consensus 179 ----~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 233 (335)
T 1dxh_A 179 ----L-GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLT---EDPKEAVKGVDFVHTDVW 233 (335)
T ss_dssp ----T-TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred ----c-CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhCCCCEEEeCCc
Confidence 3 6899999963 222 22344455666565554 445588999999887654
No 160
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=34.33 E-value=2.8e+02 Score=25.64 Aligned_cols=119 Identities=9% Similarity=0.020 Sum_probs=69.0
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHH---Hhhc-CC-CCCCceEEEEeccccccCHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKE---QQQN-GT-HAFAKGAYYIGKMVWSKGYKELLELLD 252 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~---~~~~-~~-~~~~~~il~vGrl~~~Kg~~~li~a~~ 252 (467)
+|.++.=.. ....+.+ ..+++|||-+ +...|.+.... ..+. .. .-....|.|+|-. ...=...++.++.
T Consensus 100 ~D~IviR~~~~~~~~~lA~~~~vPVINa~~-~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~-~~~va~Sl~~~~~ 177 (333)
T 1duv_G 100 YDGIQYRGYGQEIVETLAEYASVPVWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDA-RNNMGNSMLEAAA 177 (333)
T ss_dssp CSEEEEECSCHHHHHHHHHHHSSCEEESCC-SSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCT-TSHHHHHHHHHHH
T ss_pred CCEEEEEcCCchHHHHHHHhCCCCeEcCCC-CCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCC-ccchHHHHHHHHH
Confidence 587666552 2333332 3678889876 56666544322 1222 22 2235689999985 2222445555555
Q ss_pred HHHhhcCCeEEEEEecC---CCH---HHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 253 DHQKELAGLEVDLYGNG---EDF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 253 ~l~~~~~~~~l~i~G~g---~~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
.+ ++++.++|+. ++. +.+++.+++.|..+.+. .+.++.+..+||+....+
T Consensus 178 ~~-----G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 178 LT-----GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLT---EDVAKGVEGADFIYTDVW 233 (333)
T ss_dssp HH-----CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEE---SCHHHHHTTCSEEEECCS
T ss_pred Hc-----CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE---ECHHHHhCCCCEEEeCCc
Confidence 43 6789999963 221 22344455666566555 445588999999987654
No 161
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=34.27 E-value=45 Score=29.58 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=24.9
Q ss_pred eEEEEEeccC------CccccccchhHHHH-HHhhhcCCccEEEEeee
Q 012256 7 HIAIFTTASL------PWLTGTAVNPLFRA-AYLAKDGETRVTLVIPW 47 (467)
Q Consensus 7 ~I~iv~~~~~------P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~ 47 (467)
||+|+.+.+- .+.+|--..-+... ..|.+.| .+|++..|.
T Consensus 11 kvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG-~~V~~aSp~ 57 (247)
T 3n7t_A 11 KALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAG-FEVDVASET 57 (247)
T ss_dssp EEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred eEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 6999888741 23345333333333 8899999 777777763
No 162
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=34.23 E-value=26 Score=31.17 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=53.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHHhcCC---eeEEecCC-CCHH-HHHHhcCeEEecCCCCC
Q 012256 240 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDV 313 (467)
Q Consensus 240 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~~---~v~~~g~~-~~~~-~~~~~adv~v~ps~~e~ 313 (467)
-.|=...|..|+..+..-...-.++++|.... ...+.+.++..|. +-+|+|+. .... .-++.=|++|..... .
T Consensus 50 L~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~-~ 128 (252)
T 3u5c_A 50 VGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPR-S 128 (252)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTT-T
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCc-c
Confidence 34545566666666543212345788897655 3446666776664 33566554 2222 223344666655322 2
Q ss_pred CcHHHHHHHHcCCeEEEeC
Q 012256 314 VCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 314 ~~~~~lEAma~G~PVV~t~ 332 (467)
=-.++.||.-.|.|+|+--
T Consensus 129 d~~ai~EA~~l~IP~Ial~ 147 (252)
T 3u5c_A 129 DAQAIKEASYVNIPVIALT 147 (252)
T ss_dssp THHHHHHHHTTTCCEEEEE
T ss_pred chHHHHHHHHcCCCEEEEE
Confidence 2467999999999999743
No 163
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=34.18 E-value=26 Score=30.92 Aligned_cols=67 Identities=13% Similarity=0.012 Sum_probs=42.8
Q ss_pred CCeEEEEEecC-CCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 259 AGLEVDLYGNG-EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 259 ~~~~l~i~G~g-~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
....+++-|-. ++...+.+.++.+|..+ . ....+-..+.-+|.+.. .-..+++.|+|+|++||..+-
T Consensus 8 ~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~--~----~~~~~~~~~THlV~~~~--~RT~K~l~aia~G~wIvs~~w 75 (235)
T 3al2_A 8 KQYIFQLSSLNPQERIDYCHLIEKLGGLV--I----EKQCFDPTCTHIVVGHP--LRNEKYLASVAAGKWVLHRSY 75 (235)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEE--C----CSSSCCTTCCEEEESSC--CCSHHHHHHHHTTCEEECTHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHcCCEE--e----ccCCCCCCCcEEEECCC--CCCHHHHHHHHcCCcCccHHH
Confidence 35667777743 23556788888877432 1 10111245666776643 237899999999999998763
No 164
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.18 E-value=2.4e+02 Score=25.55 Aligned_cols=141 Identities=11% Similarity=-0.008 Sum_probs=64.5
Q ss_pred hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHHHcCCHH
Q 012256 301 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 380 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 380 (467)
..|.+|+.+. +.++...|.|+|..+....+ .....+..|+.+....+.+.+++.......--. ..-+..
T Consensus 119 ~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~-~~~~~~ 187 (333)
T 3jvd_A 119 QAAGIIHVPV-------VGSIAPEGIPMVQLTRGELG---PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALV-GEESLS 187 (333)
T ss_dssp TCSEEEECCC-------TTCCC-CCSCEEEECC-------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEE-SCTTSH
T ss_pred CCCEEEEcch-------HHHHhhCCCCEEEECccCCC---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEe-CCCCCc
Confidence 3466555433 33445789999998874322 122335555777777777777765433110000 000111
Q ss_pred HHHHHHHHHHhccccccCCCCCCCCCccccccchhHHhHHHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCCC
Q 012256 381 SATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 460 (467)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 460 (467)
...+|+.. |..+....... . .... . ....+.+...+..++...+ ...+|+.....-.-..+.+++.|+.
T Consensus 188 ~~~~R~~G-f~~al~~~g~~-----~-~~~~-~--~~~~~~~~~~~~~ll~~~~-~~ai~~~nd~~A~g~~~al~~~G~~ 256 (333)
T 3jvd_A 188 TTQERMRG-ISHAASIYGAE-----V-TFHF-G--HYSVESGEEMAQVVFNNGL-PDALIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHHHH-HHHHHHHTTCE-----E-EEEE-C--CSSHHHHHHHHHHHHHTCC-CSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHH-HHHHHHHCCCC-----E-EEec-C--CCCHHHHHHHHHHHhcCCC-CcEEEECCHHHHHHHHHHHHHcCCC
Confidence 22222222 22111100000 0 0000 0 0123445555566666555 5666665443333567889999998
Q ss_pred CCC
Q 012256 461 TPM 463 (467)
Q Consensus 461 ~~~ 463 (467)
.|+
T Consensus 257 vP~ 259 (333)
T 3jvd_A 257 VPH 259 (333)
T ss_dssp TTT
T ss_pred CCC
Confidence 774
No 165
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.77 E-value=2e+02 Score=24.25 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHH
Q 012256 244 YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 323 (467)
Q Consensus 244 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma 323 (467)
...+++++...++... ++-++|-+.....++....-++.++.++...+..+ .--.+.++.+
T Consensus 80 ~~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e-----------------~~~~i~~l~~ 140 (196)
T 2q5c_A 80 RFDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDE-----------------ITTLISKVKT 140 (196)
T ss_dssp HHHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGG-----------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHH-----------------HHHHHHHHHH
Confidence 3445666666655322 56666654444444444445555555543333322 0123445555
Q ss_pred cCCeEEEeCCCCccccc-cCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 324 MGKIVVCANHPSNDFFK-QFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 324 ~G~PVV~t~~g~~e~v~-~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
-|+-+|.-+.-..+... -+-++++.. +.+++.+++.+++.
T Consensus 141 ~G~~vvVG~~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 141 ENIKIVVSGKTVTDEAIKQGLYGETINSGEESLRRAIEEALN 182 (196)
T ss_dssp TTCCEEEECHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCeEEECCHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 55544444332222221 223344444 57888888777654
No 166
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=33.47 E-value=3e+02 Score=25.60 Aligned_cols=118 Identities=10% Similarity=0.053 Sum_probs=67.4
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHH---HhhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKE---QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~---~~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=.. ....+.+ ..+++|||-+ ....|.+.... ..+....-....|.|+|-++ .=...++.++..+
T Consensus 126 ~D~IviR~~~~~~~~~lA~~~~vPVINag~-~~~HPtQaLaDl~TI~E~~G~l~glkva~vGD~~--nva~Sl~~~~~~~ 202 (340)
T 4ep1_A 126 IDGIMIRTFSHADVEELAKESSIPVINGLT-DDHHPCQALADLMTIYEETNTFKGIKLAYVGDGN--NVCHSLLLASAKV 202 (340)
T ss_dssp CSEEEEECSCHHHHHHHHHHCSSCEEEEEC-SSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCC--HHHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHhCCCCEEeCCC-CCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCc--hhHHHHHHHHHHc
Confidence 587666552 2333333 4678889877 35666543322 11222223366899999761 1244556666554
Q ss_pred HhhcCCeEEEEEecCCC--HHH----HHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
++++.++|+... .+. +++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 203 -----G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 203 -----GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEIL---HNPELAVNEADFIYTDVW 256 (340)
T ss_dssp -----TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEE---SCHHHHHTTCSEEEECCC
T ss_pred -----CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE---CCHHHHhCCCCEEEecCc
Confidence 578999996322 122 333445666555543 344578999999887654
No 167
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=33.20 E-value=2.3e+02 Score=24.12 Aligned_cols=105 Identities=8% Similarity=-0.040 Sum_probs=62.8
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHHc--CCeEEEeCC-
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM--GKIVVCANH- 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma~--G~PVV~t~~- 333 (467)
.+++|+.+.+. ...+....+..+..+.........-+.+.. .|++++=-. .+.-|+.+++.+.. ++|||.-..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 46777777655 344666666666665443332222233332 477765422 34456777776643 677765433
Q ss_pred CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 334 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 334 g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
.. .+.+..+..+++.. +++++.++|..++...
T Consensus 86 ~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 22 24556677787765 9999999999988753
No 168
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=33.20 E-value=55 Score=27.37 Aligned_cols=66 Identities=24% Similarity=0.210 Sum_probs=43.4
Q ss_pred HHHHhcCeEEecCCCCCCcH--HHHHHHHcCCeEEEeCC-CCc-cccccC-CCE-EeeCCHHHHHHHHHHHHhc
Q 012256 297 LIFHDYKVFLNPSTTDVVCT--TTAEALAMGKIVVCANH-PSN-DFFKQF-PNC-RTYDDRNGFVEATLKALAE 364 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~--~~lEAma~G~PVV~t~~-g~~-e~v~~~-~~g-~~~~~~~~l~~~i~~~l~~ 364 (467)
-+...||.||... -++|. .+.||+..++||++-+. +.. .++.+. ... .+++|++++.+.+.+.+..
T Consensus 103 ~m~~~sda~Ivlp--Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 103 INALSSNVLVAVG--MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CCGGGCSEEEEES--CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHHhCCEEEEec--CCccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 4555678776432 23443 57888999999999987 321 233322 222 4556999999999988764
No 169
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=32.97 E-value=93 Score=23.60 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=59.6
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcC-CeeEEecCCCCHHHHHH--hcCeEEecC-CCCCCcHHHHHHHHc---CCeEEEe
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLK-IVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALAM---GKIVVCA 331 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~-~~v~~~g~~~~~~~~~~--~adv~v~ps-~~e~~~~~~lEAma~---G~PVV~t 331 (467)
..+++|+.+.+. ...+.+..+..+ .++.........-+.+. ..|+++.=. ..+.-|+.+++.+.. .+|||..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 93 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAV 93 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEE
Confidence 457888887655 445666677666 55554332222112222 247766532 223334455555432 6777665
Q ss_pred CC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 332 NH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 332 ~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. ... +.+..+..+++.. +++++.++|..++..
T Consensus 94 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 94 SDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred eCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 44 332 3556677788776 999999999887653
No 170
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=32.78 E-value=1.5e+02 Score=27.27 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=56.6
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEe
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLN 307 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ 307 (467)
..+.++|--.- | ..+++++.. .++++++-+-+. +.+..++.+++.+.. ..+.+.++++. ..|+++.
T Consensus 6 ~~igiiG~G~~--g-~~~~~~l~~----~~~~~l~av~d~-~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i 73 (330)
T 3e9m_A 6 IRYGIMSTAQI--V-PRFVAGLRE----SAQAEVRGIASR-RLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYI 73 (330)
T ss_dssp EEEEECSCCTT--H-HHHHHHHHH----SSSEEEEEEBCS-SSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEE
T ss_pred EEEEEECchHH--H-HHHHHHHHh----CCCcEEEEEEeC-CHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEE
Confidence 35666664211 1 134555543 367777655443 335566666666531 12345557887 6799888
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.+....-.-.+.+|+..|++|++-+.
T Consensus 74 ~tp~~~h~~~~~~al~~gk~vl~EKP 99 (330)
T 3e9m_A 74 PTYNQGHYSAAKLALSQGKPVLLEKP 99 (330)
T ss_dssp CCCGGGHHHHHHHHHHTTCCEEECSS
T ss_pred cCCCHHHHHHHHHHHHCCCeEEEeCC
Confidence 77665555567899999999998765
No 171
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=32.56 E-value=29 Score=34.21 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=22.4
Q ss_pred eEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPE 59 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~ 59 (467)
||+|| |.++.-+.-|.+|++.| ++|+|+-.
T Consensus 3 ~VvVI---------GaG~~GL~aA~~La~~G--------------~~V~VlEa 32 (501)
T 4dgk_A 3 PTTVI---------GAGFGGLALAIRLQAAG--------------IPVLLLEQ 32 (501)
T ss_dssp CEEEE---------CCHHHHHHHHHHHHHTT--------------CCEEEECC
T ss_pred CEEEE---------CCcHHHHHHHHHHHHCC--------------CcEEEEcc
Confidence 58787 43556677779999999 88888654
No 172
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=32.46 E-value=1e+02 Score=25.37 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=43.3
Q ss_pred CeEEecCCCCCCcHHHHHHH-HcCCeEEEe---CCCCcc------ccccCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 303 KVFLNPSTTDVVCTTTAEAL-AMGKIVVCA---NHPSND------FFKQFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAm-a~G~PVV~t---~~g~~e------~v~~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
.+.++|.-+--.+.++..|+ +.++|+|=- ++-.+| ++.+-..|.++- -.+...-|+..+++
T Consensus 97 gIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRhhS~is~~a~GvI~G~G~~gY~lAl~al~~ 168 (172)
T 3n8k_A 97 PVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHSYLSPIATGVIVGLGIQGYLLALRYLAE 168 (172)
T ss_dssp CEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred EEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhcccccccccccccceEEEEeCChHHHHHHHHHHHH
Confidence 57889987777899999998 567898854 333355 444555677776 77777777776654
No 173
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=32.31 E-value=1.5e+02 Score=21.66 Aligned_cols=103 Identities=6% Similarity=-0.027 Sum_probs=57.9
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEec-CCCCCCcHHHHHHHH---cCCeEEEeCC-
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNP-STTDVVCTTTAEALA---MGKIVVCANH- 333 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~p-s~~e~~~~~~lEAma---~G~PVV~t~~- 333 (467)
+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|+++.= ...+.-|..+++.+. ..+|+|....
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 4566666544 344555555556554322221111133333 4776653 222345667777765 3567665433
Q ss_pred CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
+. .+.+..+..+++.. +.+++..++..++..
T Consensus 82 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 33 24556677787776 999999999887754
No 174
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=32.09 E-value=53 Score=28.24 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhh-cCCccEEEEee
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAK-DGETRVTLVIP 46 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~-~G~~~V~~~~p 46 (467)
|+|+++||++..+... + +......++.|.+ .| .+|.+++.
T Consensus 15 ~~l~~k~IllgvTGsi----a-a~k~~~lv~~L~~~~g-~~V~vv~T 55 (206)
T 1qzu_A 15 LMERKFHVLVGVTGSV----A-ALKLPLLVSKLLDIPG-LEVAVVTT 55 (206)
T ss_dssp -CCSSEEEEEEECSSG----G-GGTHHHHHHHHC---C-EEEEEEEC
T ss_pred cccCCCEEEEEEeChH----H-HHHHHHHHHHHhcccC-CEEEEEEC
Confidence 4566678877766651 2 4455555588988 78 55555544
No 175
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=32.06 E-value=1.5e+02 Score=27.26 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=56.7
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEe
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLN 307 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ 307 (467)
..+.++|--.- |. .+++++.. .++++++-+-+ .+.+..++.+++++ +..+ ...++++. ..|+++.
T Consensus 5 ~rvgiiG~G~~--g~-~~~~~l~~----~~~~~l~av~d-~~~~~~~~~a~~~g--~~~~---~~~~~~l~~~~~D~V~i 71 (344)
T 3euw_A 5 LRIALFGAGRI--GH-VHAANIAA----NPDLELVVIAD-PFIEGAQRLAEANG--AEAV---ASPDEVFARDDIDGIVI 71 (344)
T ss_dssp EEEEEECCSHH--HH-HHHHHHHH----CTTEEEEEEEC-SSHHHHHHHHHTTT--CEEE---SSHHHHTTCSCCCEEEE
T ss_pred eEEEEECCcHH--HH-HHHHHHHh----CCCcEEEEEEC-CCHHHHHHHHHHcC--Ccee---CCHHHHhcCCCCCEEEE
Confidence 35677774111 11 23444432 46777764444 34455666666665 2222 44557887 7799998
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.+......-.+.+|+..|++|++-+.
T Consensus 72 ~tp~~~h~~~~~~al~~gk~v~~EKP 97 (344)
T 3euw_A 72 GSPTSTHVDLITRAVERGIPALCEKP 97 (344)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEECSC
T ss_pred eCCchhhHHHHHHHHHcCCcEEEECC
Confidence 87666656667899999999998775
No 176
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.83 E-value=1.5e+02 Score=21.69 Aligned_cols=101 Identities=11% Similarity=-0.004 Sum_probs=58.6
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHH--hcCeEEecCC-CCCCcHHHHHHHHc-----CCeEE
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPST-TDVVCTTTAEALAM-----GKIVV 329 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~--~adv~v~ps~-~e~~~~~~lEAma~-----G~PVV 329 (467)
+++|+.+.+. ...+....+..+..+... .... ..+. ..|+++.=.. .+.-|+.+++.+.. .+|||
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~---~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQT---REGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEE---SCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEe---CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 4677776554 344666666656554322 2222 3333 2477765322 23456777777653 56777
Q ss_pred EeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 330 CANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 330 ~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
.... ... +.+..+..+++.. +.+++.+++..++...
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 6543 221 3455677787776 9999999999987653
No 177
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=31.46 E-value=29 Score=27.82 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=21.4
Q ss_pred CCCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 2 DRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 2 ~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
+|| ++|+.+.. |+.+-.+.+.+..+..+.+.|
T Consensus 12 ~~~---~~ivv~~~-Pyg~~~a~~Al~~A~aala~g 43 (140)
T 2d1p_A 12 SMR---FAIVVTGP-AYGTQQASSAFQFAQALIADG 43 (140)
T ss_dssp CCE---EEEEECSC-SSSSSHHHHHHHHHHHHHHTT
T ss_pred ceE---EEEEEcCC-CCCcHHHHHHHHHHHHHHHCC
Confidence 467 98888876 664443444555567777789
No 178
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=31.00 E-value=1.2e+02 Score=24.82 Aligned_cols=104 Identities=10% Similarity=0.012 Sum_probs=61.3
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHH---cCCeEEEeC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA---MGKIVVCAN 332 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma---~G~PVV~t~ 332 (467)
..+++|+.+.+. ...+....+..+..+.........-+.+.. .|++++=- ..+.-|+.+++.+- ..+|||.-.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 457888887665 445666666666554332221111133333 37766532 22445777776654 367777654
Q ss_pred C-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 333 H-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 333 ~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
. ... +.+..|..+++.. +.+++.++|..++.
T Consensus 87 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 87 GYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 4 332 4556777788876 99999998877654
No 179
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.82 E-value=1.6e+02 Score=21.72 Aligned_cols=105 Identities=9% Similarity=-0.042 Sum_probs=61.2
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEec-CCCCCCcHHHHHHHHc-----CCeEEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNP-STTDVVCTTTAEALAM-----GKIVVC 330 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~p-s~~e~~~~~~lEAma~-----G~PVV~ 330 (467)
..+++|+.+.+. ...+.+..+..+..+.........-+.+.. .|+++.= ...+.-|+.+++.+.. .+|||.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVA 82 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEE
Confidence 356788877554 455677677766554443322111144433 3776654 2335567777777653 467776
Q ss_pred eCC-CC---ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 331 ANH-PS---NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 331 t~~-g~---~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
... .. .+.+..+..+++.. +.+++.+++......
T Consensus 83 ~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 83 VSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 544 32 23444556677766 999999999987654
No 180
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=30.60 E-value=2.6e+02 Score=23.99 Aligned_cols=105 Identities=7% Similarity=-0.135 Sum_probs=61.0
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEec-CCCCCCcHHHHHHHHc---CCeEEEeC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP-STTDVVCTTTAEALAM---GKIVVCAN 332 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~p-s~~e~~~~~~lEAma~---G~PVV~t~ 332 (467)
..+++|+.+.+. ...+....+..+..+.........-+.+. ..|++++= ...+.-|+.+++.+.. .+|||.-.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt 102 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLT 102 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 467777776554 34455555555555433221111113332 24777653 2234456777776643 56776554
Q ss_pred C-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 333 H-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 333 ~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
. ... +.+..+..+++.. +.+++.++|..++..
T Consensus 103 ~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 103 ARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp CSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 4 332 3556677788876 999999999998863
No 181
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=30.47 E-value=1.9e+02 Score=22.49 Aligned_cols=102 Identities=6% Similarity=-0.013 Sum_probs=64.4
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCe-eEEecCCCCHH---HHHHh--cCeEEecC-CCCCCcHHHHHHHH-----cC
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIV-VRVYPGRDHAD---LIFHD--YKVFLNPS-TTDVVCTTTAEALA-----MG 325 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~-v~~~g~~~~~~---~~~~~--adv~v~ps-~~e~~~~~~lEAma-----~G 325 (467)
.+.+++|+-|.+. +..+++..+..|.. +... .... ++++. .|+.+.=- ..+--|+.+++.+- ..
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a---~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEA---DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEE---SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEE---CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 3678888877655 44566677777764 3222 2222 34433 37776432 22445778888774 46
Q ss_pred CeEEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 326 KIVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 326 ~PVV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
+|||.-.. +.. +.+..|.++++.. +++++.++|.++++
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 78776544 442 3556677888887 99999999998865
No 182
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.22 E-value=1.7e+02 Score=21.73 Aligned_cols=103 Identities=8% Similarity=-0.011 Sum_probs=59.4
Q ss_pred CCeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHHh--cCeEEecCC-CCCCcHHHHHHHHc---CCeE
Q 012256 259 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALAM---GKIV 328 (467)
Q Consensus 259 ~~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~--adv~v~ps~-~e~~~~~~lEAma~---G~PV 328 (467)
...+++|+.+.+. ...+.+..+..+..+.... ..+ +.+.. .|+++.=.. .+.-|+.+++.+.. .+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 82 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAA---DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPV 82 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEES---CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeC---CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3567888887655 4456666777776654432 233 33333 377765432 34456777776643 4666
Q ss_pred EEeCC-CCc----cccccCCCEEeeC---CHHHHHHHHHHHHhc
Q 012256 329 VCANH-PSN----DFFKQFPNCRTYD---DRNGFVEATLKALAE 364 (467)
Q Consensus 329 V~t~~-g~~----e~v~~~~~g~~~~---~~~~l~~~i~~~l~~ 364 (467)
|.... ... +.+..+..+++.. +.+++.+++..++..
T Consensus 83 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 83 LVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 65444 332 3556677787765 678999999998865
No 183
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=30.12 E-value=1.8e+02 Score=22.02 Aligned_cols=103 Identities=8% Similarity=-0.007 Sum_probs=58.9
Q ss_pred EEEEEecCCCH-HHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCC-CCCCcHHHHHHHH---cCCeEEEeCC-
Q 012256 262 EVDLYGNGEDF-NQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH- 333 (467)
Q Consensus 262 ~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~-~e~~~~~~lEAma---~G~PVV~t~~- 333 (467)
+++|+.+.+.. ..+....+..+..+.........-+.+. ..|+++.=-. .+.-|..+++.+. ..+|||....
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 67888877663 3455555544544432222111113333 3487775422 2345666776664 4567765543
Q ss_pred CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
... +.+..+..+++.. +.+++.++|..++..
T Consensus 86 ~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 86 GSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 332 3556677788776 999999999887653
No 184
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=29.89 E-value=1.7e+02 Score=21.54 Aligned_cols=103 Identities=6% Similarity=-0.041 Sum_probs=58.1
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHH--cCCeEEEeCC-C
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA--MGKIVVCANH-P 334 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma--~G~PVV~t~~-g 334 (467)
+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=. ..+.-|..+++.+. ...|||.... .
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 5677776554 344555566666554432211111133333 37766532 23444666666653 3567765443 3
Q ss_pred Cc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 335 SN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 335 ~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. +.+..+..+++.. +.+++..++..++..
T Consensus 84 ~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 84 SEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp CHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 32 3456677777766 999999999988753
No 185
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.84 E-value=2.9e+02 Score=24.39 Aligned_cols=146 Identities=16% Similarity=0.014 Sum_probs=67.4
Q ss_pred cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHHHcCCHHH
Q 012256 302 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWES 381 (467)
Q Consensus 302 adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~ 381 (467)
.|.+|+.+....-.-.+-++.. |.|||..+....+ ....+..|+.+....+...+++.......--. ...+...
T Consensus 72 vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i~~~~~~----~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~-~~~~~~~ 145 (303)
T 3kke_A 72 VDGVLLQRREDFDDDMLAAVLE-GVPAVTINSRVPG----RVGSVILDDQKGGGIATEHLITLGHSRIAFIS-GTAIHDT 145 (303)
T ss_dssp SSEEEECCCTTCCHHHHHHHHT-TSCEEEESCCCTT----CCCEEEECHHHHHHHHHHHHHHTTCCSEEEEE-SCSSCHH
T ss_pred CcEEEEecCCCCcHHHHHHHhC-CCCEEEECCcCCC----CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEe-CCCcCcc
Confidence 4655554332221102333444 9999999874432 22335555777777777887775444211000 0011122
Q ss_pred HHHHH---HHHHhccccccCCCCCCCCCccccccchhHHhHHHHHHHHHHH-----hcCCCccceEeeecCCCCCchHHH
Q 012256 382 ATERF---LQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFL-----ASGFETSRRAFGAIPGSLHPDEEL 453 (467)
Q Consensus 382 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~ 453 (467)
..+|+ .+.++..- .+.. . ....... ...+.+...+..+ +...+....+|+.....-.-..+.
T Consensus 146 ~~~R~~Gf~~al~~~g-~~~~-----~--~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~a 215 (303)
T 3kke_A 146 AQRRKEGYLETLASAG-LRSE-----A--AWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALST 215 (303)
T ss_dssp HHHHHHHHHHHHHHTT-CCCC-----G--GGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCC-----c--ceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHH
Confidence 22333 22222110 0000 0 0000000 1123444555555 665544556666544333446688
Q ss_pred HHHhCCCCCC
Q 012256 454 CKELGLVTPM 463 (467)
Q Consensus 454 ~~~~~~~~~~ 463 (467)
+++.|+..|+
T Consensus 216 l~~~G~~vP~ 225 (303)
T 3kke_A 216 ALRLGLRVPE 225 (303)
T ss_dssp HHHTTCCTTT
T ss_pred HHHcCCCCCC
Confidence 9999998774
No 186
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=29.81 E-value=48 Score=28.91 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=17.6
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
+++++|+|| |++......++.|.+.|
T Consensus 29 L~gk~VLVV---------GgG~va~~ka~~Ll~~G 54 (223)
T 3dfz_A 29 LKGRSVLVV---------GGGTIATRRIKGFLQEG 54 (223)
T ss_dssp CTTCCEEEE---------CCSHHHHHHHHHHGGGC
T ss_pred cCCCEEEEE---------CCCHHHHHHHHHHHHCC
Confidence 456678887 33434555569999999
No 187
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=29.81 E-value=1.7e+02 Score=21.55 Aligned_cols=100 Identities=7% Similarity=-0.119 Sum_probs=58.9
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH-----hcCeEEecCC-CCCCcHHHHHHHH-----cCCeEE
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH-----DYKVFLNPST-TDVVCTTTAEALA-----MGKIVV 329 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~-----~adv~v~ps~-~e~~~~~~lEAma-----~G~PVV 329 (467)
+++|+.+.+. ...+....+..+..+.. ....++.+. ..|+++.=.. .+.-|..+++.+. .++|||
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~---~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVE---AEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEE---ECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEE---eCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5777776655 34466666666655432 233332222 2377664322 2334677777775 356776
Q ss_pred EeCC-CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 330 CANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 330 ~t~~-g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.-.. .. .+.+..+..+++.. +.+++.+++..++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 5433 32 23555666777765 999999999998765
No 188
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=29.77 E-value=3e+02 Score=24.54 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=34.3
Q ss_pred HhcCeEEecCCC-CCCcHHHHHHHHcCCeEEEeCCCCccccccCCC-EEeeCCHHHHHHHHHHHHh
Q 012256 300 HDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPN-CRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 300 ~~adv~v~ps~~-e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~-g~~~~~~~~l~~~i~~~l~ 363 (467)
+..|.+|+.+.. +...-.+-++...|.|||..+....+. .... .+..++.+.-..+...+++
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~l~~ 121 (330)
T 3uug_A 58 KGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--GDVSYYATFDNFQVGVLQATSITD 121 (330)
T ss_dssp HTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--TTCCEEEEECHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--CceeEEEEeCHHHHHHHHHHHHHH
Confidence 345766654433 334444667778999999998743221 1112 2334455555555556555
No 189
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.40 E-value=1.8e+02 Score=21.69 Aligned_cols=104 Identities=7% Similarity=-0.073 Sum_probs=58.9
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHHc-----CCeEEEe
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALAM-----GKIVVCA 331 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma~-----G~PVV~t 331 (467)
.+++|+.+.+. ...+....+ .+..+.........-+.+.. .|+++.=. ..+.-|..+++.+.. .+|||..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 46777776554 333444443 34444433222111133333 37766542 334557777777654 6777765
Q ss_pred CC-CCc---cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 332 NH-PSN---DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 332 ~~-g~~---e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
.. ... +.+..+..+++.. +++++.++|..++...
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 84 SGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp ESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 44 332 3445556667776 9999999999998764
No 190
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=29.25 E-value=1.2e+02 Score=28.58 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=47.9
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.++++++-+-+. +.+..++.+++++.. . +...++++.. .|+++..+....-.-.+.+|+..|++|++-+.
T Consensus 25 ~~~~~l~av~d~-~~~~~~~~a~~~g~~--~---~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP 96 (387)
T 3moi_A 25 HPDAQIVAACDP-NEDVRERFGKEYGIP--V---FATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKP 96 (387)
T ss_dssp CTTEEEEEEECS-CHHHHHHHHHHHTCC--E---ESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCeEEEEEEeC-CHHHHHHHHHHcCCC--e---ECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCC
Confidence 467777655543 345566666666543 2 3455678876 79999887665555568899999999998775
No 191
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=29.25 E-value=2.1e+02 Score=24.84 Aligned_cols=101 Identities=13% Similarity=0.013 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHH
Q 012256 244 YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 323 (467)
Q Consensus 244 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma 323 (467)
...+++++.+.++... ++-++|-+.....++....-++.++.++...+..+ . -..+.++.+
T Consensus 92 ~~Dil~aL~~a~~~~~--kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee-~----------------~~~i~~l~~ 152 (225)
T 2pju_A 92 GYDVLQFLAKAGKLTS--SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED-A----------------RGQINELKA 152 (225)
T ss_dssp HHHHHHHHHHTTCTTS--CEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHH-H----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC--cEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHH-H----------------HHHHHHHHH
Confidence 3445667776655322 56667766555566666666666666655444433 1 123445555
Q ss_pred cCCeEEEeCCCCccccc-cCCCEEeeCCHHHHHHHHHHHHh
Q 012256 324 MGKIVVCANHPSNDFFK-QFPNCRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 324 ~G~PVV~t~~g~~e~v~-~~~~g~~~~~~~~l~~~i~~~l~ 363 (467)
-|+-+|.-+.-..+... -|-++++..+.+++.+++.+++.
T Consensus 153 ~G~~vVVG~~~~~~~A~~~Gl~~vlI~s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 153 NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALD 193 (225)
T ss_dssp TTCCEEEESHHHHHHHHHTTSEEEESSCHHHHHHHHHHHHH
T ss_pred CCCCEEECCHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 55555544432222222 22334444466777777766654
No 192
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=29.18 E-value=3.4e+02 Score=24.98 Aligned_cols=119 Identities=10% Similarity=0.058 Sum_probs=67.5
Q ss_pred cCEEEEcCH---hhHHhhh-cccccccccCCCccccchhhHHH---hhcCCCCCCceEEEEeccccccCHHHHHHHHHHH
Q 012256 182 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 254 (467)
Q Consensus 182 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~~~~~~~~~~~il~vGrl~~~Kg~~~li~a~~~l 254 (467)
+|.++.=.. ....+.+ ..+++|||-+. ...|.+..... .+....-....|.|+|-. ...=...++.++..
T Consensus 114 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~-~~rva~Sl~~~~~~- 190 (325)
T 1vlv_A 114 VDAIMFRGYKQETVEKLAEYSGVPVYNGLTD-EFHPTQALADLMTIEENFGRLKGVKVVFMGDT-RNNVATSLMIACAK- 190 (325)
T ss_dssp CSEEEEESSCHHHHHHHHHHHCSCEEESCCS-SCCHHHHHHHHHHHHHHHSCSTTCEEEEESCT-TSHHHHHHHHHHHH-
T ss_pred CCEEEEECCChHHHHHHHHhCCCCEEeCCCC-CCCcHHHHHHHHHHHHHhCCcCCcEEEEECCC-CcCcHHHHHHHHHH-
Confidence 587666552 2333332 35788898774 56665433221 111122235689999974 12223445555544
Q ss_pred HhhcCCeEEEEEecC---CCH---HHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCC
Q 012256 255 QKELAGLEVDLYGNG---EDF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 310 (467)
Q Consensus 255 ~~~~~~~~l~i~G~g---~~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~ 310 (467)
. ++++.++|+. ++. +.+++.+++.|..+.+. .+.++.+..+||+.....
T Consensus 191 ---~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvyt~~w 245 (325)
T 1vlv_A 191 ---M-GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFT---SNLEEALAGADVVYTDVW 245 (325)
T ss_dssp ---T-TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEE---SCHHHHHTTCSEEEECCC
T ss_pred ---C-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---cCHHHHHccCCEEEeccc
Confidence 3 6899999963 222 22344455666555554 455688999999887654
No 193
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=28.93 E-value=2.4e+02 Score=25.81 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=47.6
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.++++++-+-+ .+.+..++.++..+.. . .+.+.++++. ..|+++..+......-.+.+|+..|++|++-+.
T Consensus 24 ~~~~~l~av~d-~~~~~~~~~~~~~~~~-~---~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 96 (344)
T 3ezy_A 24 IDDAILYAISD-VREDRLREMKEKLGVE-K---AYKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKP 96 (344)
T ss_dssp STTEEEEEEEC-SCHHHHHHHHHHHTCS-E---EESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHhCCC-c---eeCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEECC
Confidence 46777664444 3445566666666532 1 1244557887 689999887665555567899999999998775
No 194
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=28.78 E-value=1.9e+02 Score=21.93 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=63.7
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH--HHHHh--cCeEEecCC-CCCCcHHHHHHHHc-----CCeE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIV 328 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~--~~~~~--adv~v~ps~-~e~~~~~~lEAma~-----G~PV 328 (467)
..+++|+.+.+. ...+.+..+..+....+...-+..+ +.+.. .|+++.=.. .+.-|+.+++.+.. ++||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 467888887654 4557777777776533322112222 34433 377765432 34557778887764 5777
Q ss_pred EEeCC-CCc----cccccCCCEEeeC---CHHHHHHHHHHHHhc
Q 012256 329 VCANH-PSN----DFFKQFPNCRTYD---DRNGFVEATLKALAE 364 (467)
Q Consensus 329 V~t~~-g~~----e~v~~~~~g~~~~---~~~~l~~~i~~~l~~ 364 (467)
|.... ... +.+..+..+++.. +.+++.++|..++..
T Consensus 85 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 85 VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 76554 332 3556677777765 788999999888764
No 195
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=28.22 E-value=1.9e+02 Score=21.64 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=60.1
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHH---cCCeEEEeCC
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma---~G~PVV~t~~ 333 (467)
.+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=-. .+.-|..+++.+. .++|+|....
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 46777776655 344666666656554432221111133333 477765322 2334666666653 3677765443
Q ss_pred -CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 -g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
... +.+..+..+++.. +.+++.++|..++..
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 332 3556677788876 999999999887753
No 196
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=28.18 E-value=3.1e+02 Score=24.11 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=36.3
Q ss_pred hcCeEEe-cCCCCCCcHHHHHHHHcCCeEEEeCCCCccccc-cCCCEEeeCCHHHHHHHHHHHHhcC
Q 012256 301 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFK-QFPNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 301 ~adv~v~-ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~-~~~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
..|.+|+ |...+...-.+-++...|.|||+.+......-. .....+..++.+....+.+.+++.-
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 127 (297)
T 3rot_A 61 YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELT 127 (297)
T ss_dssp CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhc
Confidence 4565554 444455555566778899999998874322100 1112233445555555666666654
No 197
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=28.11 E-value=39 Score=31.13 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=21.4
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPE 59 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~ 59 (467)
|+|| |+|+.... -....+..|++.| ++|.++..
T Consensus 1 M~mk---I~IiGaGa---------iG~~~a~~L~~~g--------------~~V~~~~r 33 (320)
T 3i83_A 1 MSLN---ILVIGTGA---------IGSFYGALLAKTG--------------HCVSVVSR 33 (320)
T ss_dssp --CE---EEEESCCH---------HHHHHHHHHHHTT--------------CEEEEECS
T ss_pred CCCE---EEEECcCH---------HHHHHHHHHHhCC--------------CeEEEEeC
Confidence 7888 99994432 2233467889999 88877754
No 198
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=28.10 E-value=62 Score=29.23 Aligned_cols=37 Identities=32% Similarity=0.357 Sum_probs=25.8
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLS 49 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~ 49 (467)
+++++|+|+ |++......+..|.+.| .+|+++.|..+
T Consensus 11 l~~k~VLVV---------GgG~va~rka~~Ll~~G-a~VtViap~~~ 47 (274)
T 1kyq_A 11 LKDKRILLI---------GGGEVGLTRLYKLMPTG-CKLTLVSPDLH 47 (274)
T ss_dssp CTTCEEEEE---------EESHHHHHHHHHHGGGT-CEEEEEEEEEC
T ss_pred cCCCEEEEE---------CCcHHHHHHHHHHHhCC-CEEEEEcCCCC
Confidence 346678887 33435566679999999 77888777654
No 199
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=28.09 E-value=1.9e+02 Score=21.76 Aligned_cols=103 Identities=6% Similarity=-0.070 Sum_probs=52.9
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCC-CCCCcHHHHHHHH-----cCCeEEEe
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA-----MGKIVVCA 331 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~-~e~~~~~~lEAma-----~G~PVV~t 331 (467)
.+++|+.+.+. ...+.+..+.. ..+.........-+.+. ..|+++.=.. .+.-|..+++.+. ..+|||..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 45677776544 33455544443 33332222111113332 2377665432 3344566666664 46677654
Q ss_pred CC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 332 NH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 332 ~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. ... +.+..+..+++.. +.+++.++|..++..
T Consensus 83 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 43 322 3455666777776 999999999998864
No 200
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=28.07 E-value=44 Score=30.67 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPE 59 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~ 59 (467)
|+|| |+|+.... + | ...+..|++.| ++|.++..
T Consensus 1 M~mk---I~IiGaGa---i-G-----~~~a~~L~~~g--------------~~V~~~~r 33 (312)
T 3hn2_A 1 MSLR---IAIVGAGA---L-G-----LYYGALLQRSG--------------EDVHFLLR 33 (312)
T ss_dssp ---C---EEEECCST---T-H-----HHHHHHHHHTS--------------CCEEEECS
T ss_pred CCCE---EEEECcCH---H-H-----HHHHHHHHHCC--------------CeEEEEEc
Confidence 8889 99995443 1 2 33357789999 88877755
No 201
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=27.85 E-value=2.7e+02 Score=23.33 Aligned_cols=105 Identities=10% Similarity=-0.070 Sum_probs=62.5
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHH---cCCeEEEeC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA---MGKIVVCAN 332 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma---~G~PVV~t~ 332 (467)
..+++|+.+.+. ...+....+..+..+.........-+.+.. .|++++-- ..+.-|+.+++.+. ..+|||...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt 86 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLS 86 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 457888887665 344666666666554432221111133333 47776542 23445677777764 467777654
Q ss_pred C-CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 333 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 333 ~-g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
. .. .+.+..+..+++.. +.+++.++|..++..
T Consensus 87 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 87 ARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp CCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3 32 24556677788776 999999999988764
No 202
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=27.55 E-value=66 Score=28.28 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCCCCceEEEEEec----cCC--ccccccchhHHHH-HHhhhcCCccEEEEee
Q 012256 1 MDRKQQHIAIFTTA----SLP--WLTGTAVNPLFRA-AYLAKDGETRVTLVIP 46 (467)
Q Consensus 1 m~Mk~~~I~iv~~~----~~P--~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p 46 (467)
|.|| ||+|+.+. |.. +.+|....-+... +.|.+.| .+|+++.|
T Consensus 1 m~m~--kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag-~~v~~~s~ 50 (243)
T 1rw7_A 1 MAPK--KVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEG-FEVDFVSE 50 (243)
T ss_dssp -CCC--EEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTT-CEEEEECS
T ss_pred CCCc--eEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCC-CEEEEECC
Confidence 7775 59998874 221 2345332333333 7888889 45555544
No 203
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=27.49 E-value=47 Score=28.05 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=18.4
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHH-H-HH-hhhcC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFR-A-AY-LAKDG 37 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~-~-~~-L~~~G 37 (467)
|+|| |++|..+. ..+|.. ..+.. + +. |.+.|
T Consensus 1 mMmk---ilii~gS~--r~~g~t-~~la~~i~~~~l~~~g 34 (197)
T 2vzf_A 1 MTYS---IVAISGSP--SRNSTT-AKLAEYALAHVLARSD 34 (197)
T ss_dssp CCEE---EEEEECCS--STTCHH-HHHHHHHHHHHHHHSS
T ss_pred CCce---EEEEECCC--CCCChH-HHHHHHHHHHHHHHCC
Confidence 6678 99987663 445522 33333 3 66 77778
No 204
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=27.48 E-value=1.1e+02 Score=24.79 Aligned_cols=88 Identities=10% Similarity=0.164 Sum_probs=51.2
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHHHh----c-CeEEecCCCCCCcHHHHHHH-HcCCeEEEeCC---CCcc------
Q 012256 275 IQEAAEKLKIVVRVYPGRDHAD--LIFHD----Y-KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSND------ 337 (467)
Q Consensus 275 l~~~~~~~~~~v~~~g~~~~~~--~~~~~----a-dv~v~ps~~e~~~~~~lEAm-a~G~PVV~t~~---g~~e------ 337 (467)
+++.+.+++..+.+.-.=...+ +.++. + .+.++|.-+--.+.++..|+ +.++|+|=--. -.+|
T Consensus 41 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~FRh~S 120 (153)
T 3lwz_A 41 LEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREPFRHHS 120 (153)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCGGGGCC
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccchhhhcc
Confidence 4444555565555542211112 33333 2 36789987777889999997 67889985443 2345
Q ss_pred ccccCCCEEeeC-CHHHHHHHHHHHH
Q 012256 338 FFKQFPNCRTYD-DRNGFVEATLKAL 362 (467)
Q Consensus 338 ~v~~~~~g~~~~-~~~~l~~~i~~~l 362 (467)
++.+-..|.++- -.+...-++..++
T Consensus 121 ~~s~~a~GvI~G~G~~gY~lAl~~~~ 146 (153)
T 3lwz_A 121 YLSDIAVGVICGLGADGYNFALQAAV 146 (153)
T ss_dssp SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccceEEEEecChhHHHHHHHHHH
Confidence 334445677766 6666666665554
No 205
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=27.45 E-value=3.2e+02 Score=24.15 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=32.8
Q ss_pred hcCeEEec-CCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCC-CEEeeCCHHHHHHHHHHHH
Q 012256 301 DYKVFLNP-STTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFP-NCRTYDDRNGFVEATLKAL 362 (467)
Q Consensus 301 ~adv~v~p-s~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~-~g~~~~~~~~l~~~i~~~l 362 (467)
..|.+++. ...+...-.+-++...|.|||..+....+ ... ..+..++.+.-..+.+.++
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 58 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---ADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SCCSEEEEECHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CCceEEEecCHHHHHHHHHHHHH
Confidence 45665554 33333334455566789999998874322 111 1233445555666666666
No 206
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=27.42 E-value=1.2e+02 Score=27.61 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=45.8
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHH-HhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF-HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~-~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.++++++.+-+ .+.+..++.+++++. ..+ ..+.++++ ...|+++..+......-.+.+|+..|++|++-+.
T Consensus 23 ~~~~~~~~v~d-~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP 94 (325)
T 2ho3_A 23 SGEYQLVAIYS-RKLETAATFASRYQN-IQL---FDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKP 94 (325)
T ss_dssp TTSEEEEEEEC-SSHHHHHHHGGGSSS-CEE---ESCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCeEEEEEEe-CCHHHHHHHHHHcCC-CeE---eCCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcCCcEEEecC
Confidence 45677664443 334455555555553 122 23445677 5679999887766656667899999999998764
No 207
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=27.14 E-value=2.1e+02 Score=21.78 Aligned_cols=103 Identities=8% Similarity=-0.014 Sum_probs=52.5
Q ss_pred EEEEEecCCCH-HHHHHHHHhcCCeeEEecCCCCHH---HHHHh--cCeEEecC-CCCCCcHHHHHHHH---cCCeEEEe
Q 012256 262 EVDLYGNGEDF-NQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPS-TTDVVCTTTAEALA---MGKIVVCA 331 (467)
Q Consensus 262 ~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~--adv~v~ps-~~e~~~~~~lEAma---~G~PVV~t 331 (467)
+++|+.+.+.. ..+.......+....+.+.....+ +.+.. .|+++.=. ..+.-|..+++.+. .++|||..
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~l 83 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM 83 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 56777765442 223333321111222333333333 33332 47776532 22345666766654 46787765
Q ss_pred CC-CC----ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 332 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 332 ~~-g~----~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. .. .+.+..+..+++.. +.+++.++|..++..
T Consensus 84 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 84 SGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp CCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 44 32 23455666777776 999999999887753
No 208
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=27.13 E-value=1.9e+02 Score=21.31 Aligned_cols=104 Identities=8% Similarity=-0.033 Sum_probs=59.6
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCC-eeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHHc-----CCeEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKI-VVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVV 329 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~-~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma~-----G~PVV 329 (467)
..+++|+.+.+. ...+....+..+. .+.........-+.+.. .|+++.=.. .+.-|..+++.+.. .+|||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii 83 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVL 83 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEE
Confidence 356777776554 3445665655554 33322221111133332 377765322 34457778887764 46766
Q ss_pred EeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 330 CANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 330 ~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
.... ... +.+..+..+++.. +.+++.+++..++.
T Consensus 84 ~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 84 MVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 5433 332 3556677787776 99999999988765
No 209
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=27.09 E-value=42 Score=30.48 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=15.4
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
|+|| |+|+.... -....+..|++.|
T Consensus 1 M~mk---I~iiGaGa---------~G~~~a~~L~~~g 25 (294)
T 3g17_A 1 MSLS---VAIIGPGA---------VGTTIAYELQQSL 25 (294)
T ss_dssp --CC---EEEECCSH---------HHHHHHHHHHHHC
T ss_pred CCcE---EEEECCCH---------HHHHHHHHHHHCC
Confidence 8888 99995432 2223457789999
No 210
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=27.01 E-value=2.4e+02 Score=27.22 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=29.7
Q ss_pred HHHHHHhcCeEEecCCCC-CCcHHHHHHHHcCCeEEEeCCCC
Q 012256 295 ADLIFHDYKVFLNPSTTD-VVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 295 ~~~~~~~adv~v~ps~~e-~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
.++++..+|+++..+-.. .+.-..++.|.-|.-+|....|.
T Consensus 269 Leeal~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~ 310 (435)
T 3gvp_A 269 LNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSN 310 (435)
T ss_dssp HHHHTTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred HHHHHhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCC
Confidence 347889999999964433 34557888898887777766654
No 211
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=26.98 E-value=87 Score=27.84 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=23.1
Q ss_pred eEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecCC
Q 012256 7 HIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLSL 50 (467)
Q Consensus 7 ~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~~ 50 (467)
|||+.++.-+ ..-.+..+ +.|.+.| +|++++|.-.+
T Consensus 3 ~ILlTNDDGi------~apGi~~L~~~l~~~g--~V~VvAP~~~~ 39 (251)
T 2wqk_A 3 TFLLVNDDGY------FSPGINALREALKSLG--RVVVVAPDRNL 39 (251)
T ss_dssp EEEEECSSCT------TCHHHHHHHHHHTTTS--EEEEEEESSCC
T ss_pred EEEEEcCCCC------CcHHHHHHHHHHHhCC--CEEEEeeCCCC
Confidence 4877766542 21223333 8898888 69999997544
No 212
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=26.82 E-value=2.5e+02 Score=24.51 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=33.2
Q ss_pred hcCeEEecCCC-CCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHh
Q 012256 301 DYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 301 ~adv~v~ps~~-e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~ 363 (467)
..|.+|+.+.. +...-.+-++...|.|||..+.... +....+..++.+....+...+++
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~----~~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 61 KPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP----HAINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT----TCSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC----CcCceEecChHHHHHHHHHHHHH
Confidence 45666654332 2333335556678999999987432 11222344455666666666666
No 213
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=26.75 E-value=1.9e+02 Score=21.19 Aligned_cols=104 Identities=10% Similarity=-0.105 Sum_probs=58.2
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCC-CCCCcHHHHHHHH---cCCeEEEeCC
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~-~e~~~~~~lEAma---~G~PVV~t~~ 333 (467)
.+++|+.+.+. ...+....+..+..+.........-+.+. ..|+++.=-. .+.-|..+++.+. ..+|||....
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 36777776554 34455656655655432221111113333 3477765322 2334566666654 4677775443
Q ss_pred -CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 -g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
+.. +.+..+..+++.. +.+++.+++..++..
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 84 YGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp SCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred cCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 332 3445566677765 999999999987653
No 214
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=26.71 E-value=1.2e+02 Score=29.50 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=27.1
Q ss_pred CHHHHHHhcCeEEecCCCCC-CcHHHHHHHHcCCeEEEeCCCC
Q 012256 294 HADLIFHDYKVFLNPSTTDV-VCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 294 ~~~~~~~~adv~v~ps~~e~-~~~~~lEAma~G~PVV~t~~g~ 335 (467)
..++++..||+++..+-..+ +.-..++.|.-|.-+|....|.
T Consensus 259 sL~eal~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 259 LVEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp CHHHHTTTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSSG
T ss_pred CHHHHHhhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCCC
Confidence 34488899999997654332 3445677777776666655544
No 215
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=26.71 E-value=1.7e+02 Score=27.09 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=57.6
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v 306 (467)
...+.++|--.-.+ ..++++... .++++++-+-+ .+.+..++.+++.+. .. +...++++. ..|+++
T Consensus 13 ~~rvgiiG~G~~g~---~~~~~l~~~---~~~~~lvav~d-~~~~~~~~~~~~~~~--~~---~~~~~~ll~~~~~D~V~ 80 (354)
T 3q2i_A 13 KIRFALVGCGRIAN---NHFGALEKH---ADRAELIDVCD-IDPAALKAAVERTGA--RG---HASLTDMLAQTDADIVI 80 (354)
T ss_dssp CEEEEEECCSTTHH---HHHHHHHHT---TTTEEEEEEEC-SSHHHHHHHHHHHCC--EE---ESCHHHHHHHCCCSEEE
T ss_pred cceEEEEcCcHHHH---HHHHHHHhC---CCCeEEEEEEc-CCHHHHHHHHHHcCC--ce---eCCHHHHhcCCCCCEEE
Confidence 45677887521111 234454432 26777664444 344566666666663 22 245557777 579998
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..+....-.-.+.+|+..|++|++-+.
T Consensus 81 i~tp~~~h~~~~~~al~~gk~v~~EKP 107 (354)
T 3q2i_A 81 LTTPSGLHPTQSIECSEAGFHVMTEKP 107 (354)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred ECCCcHHHHHHHHHHHHCCCCEEEeCC
Confidence 877665555567899999999998765
No 216
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=26.48 E-value=75 Score=26.99 Aligned_cols=30 Identities=17% Similarity=-0.011 Sum_probs=19.7
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
|+++||++..+.. .| +......++.|.+.|
T Consensus 6 l~~k~IllgvTGs----~a-a~k~~~l~~~L~~~g 35 (194)
T 1p3y_1 6 LKDKKLLIGICGS----IS-SVGISSYLLYFKSFF 35 (194)
T ss_dssp GGGCEEEEEECSC----GG-GGGTHHHHHHHTTTS
T ss_pred cCCCEEEEEEECH----HH-HHHHHHHHHHHHHCC
Confidence 4557887776654 13 445555568899999
No 217
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=26.32 E-value=48 Score=27.78 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=16.4
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHH-H-HHhhhcC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFR-A-AYLAKDG 37 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~-~-~~L~~~G 37 (467)
|+|+ ||+||..+ | +| .+..+.. + +.|.+.|
T Consensus 3 M~M~--kilii~~S--~--~g-~T~~la~~i~~~l~~~g 34 (200)
T 2a5l_A 3 MSSP--YILVLYYS--R--HG-ATAEMARQIARGVEQGG 34 (200)
T ss_dssp --CC--EEEEEECC--S--SS-HHHHHHHHHHHHHHHTT
T ss_pred CCcc--eEEEEEeC--C--CC-hHHHHHHHHHHHHhhCC
Confidence 6662 39988766 3 56 2233333 3 7777778
No 218
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=26.23 E-value=2.5e+02 Score=26.60 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHhcCeEEecCCCC------CCcHHHHHHHHcCCeEEEeCC
Q 012256 297 LIFHDYKVFLNPSTTD------VVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e------~~~~~~lEAma~G~PVV~t~~ 333 (467)
+.+..+|+++...... -+.-.+++.|.-|.-+|-...
T Consensus 261 e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 261 DAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp HHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence 7788899999753221 144568888888887776654
No 219
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=26.15 E-value=2.9e+02 Score=24.24 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=20.6
Q ss_pred hcCeEEecCC-CCCCcHHHHHHHHcCCeEEEeCC
Q 012256 301 DYKVFLNPST-TDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 301 ~adv~v~ps~-~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..|.+++.+. .+...-.+-++...|.|||..+.
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 57 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp TCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCC
Confidence 3566555433 33333335677789999999885
No 220
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=26.06 E-value=3.3e+02 Score=23.76 Aligned_cols=148 Identities=5% Similarity=-0.138 Sum_probs=67.2
Q ss_pred hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCCCccHHHHHcCCHH
Q 012256 301 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 380 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 380 (467)
..|.+|+.+.... .-.+-++...|.|||..+....+. ....+..++.+....+.+.+++.......--. ...+..
T Consensus 66 ~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~-~~~~~~ 140 (288)
T 3gv0_A 66 SADGVIISKIEPN-DPRVRFMTERNMPFVTHGRSDMGI---EHAFHDFDNEAYAYEAVERLAQCGRKRIAVIV-PPSRFS 140 (288)
T ss_dssp CCSEEEEESCCTT-CHHHHHHHHTTCCEEEESCCCSSC---CCEEEEECHHHHHHHHHHHHHHTTCCEEEEEC-CCTTSH
T ss_pred CccEEEEecCCCC-cHHHHHHhhCCCCEEEECCcCCCC---CCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEc-CCcccc
Confidence 4565554332211 223444557899999988643211 11224445666777777777776444110000 000111
Q ss_pred HHHHHH---HHHHhccccccCCCCCCCCCccccccchhHHhHHHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHh
Q 012256 381 SATERF---LQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKEL 457 (467)
Q Consensus 381 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 457 (467)
...+|+ .+.++........ .. ... .....+.+...+..++...+....+|+.....-.-..+.+++.
T Consensus 141 ~~~~R~~gf~~~l~~~g~~~~~-~~-----~~~----~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~ 210 (288)
T 3gv0_A 141 FHDHARKGFNRGIRDFGLTEFP-ID-----AVT----IETPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAA 210 (288)
T ss_dssp HHHHHHHHHHHHHHHTTCEECC-CC-----SCC----TTSCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcCCCcch-hh-----eec----cccchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHc
Confidence 222233 2222211100000 00 000 0112234445556666655445566655433334467888999
Q ss_pred CCCCCC
Q 012256 458 GLVTPM 463 (467)
Q Consensus 458 ~~~~~~ 463 (467)
|+..|+
T Consensus 211 g~~vP~ 216 (288)
T 3gv0_A 211 GVKIGE 216 (288)
T ss_dssp TCCTTT
T ss_pred CCCCCC
Confidence 997763
No 221
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=26.05 E-value=1.8e+02 Score=27.01 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=58.9
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v 306 (467)
+..+..+|-- .-+...++.++. .++++++-+-+. +.+..++.+++++. .. .+...++++.. .|+++
T Consensus 26 ~irvgiiG~G--~~~~~~~~~~~~-----~~~~~lvav~d~-~~~~a~~~a~~~~~-~~---~~~~~~~ll~~~~vD~V~ 93 (361)
T 3u3x_A 26 ELRFAAVGLN--HNHIYGQVNCLL-----RAGARLAGFHEK-DDALAAEFSAVYAD-AR---RIATAEEILEDENIGLIV 93 (361)
T ss_dssp CCEEEEECCC--STTHHHHHHHHH-----HTTCEEEEEECS-CHHHHHHHHHHSSS-CC---EESCHHHHHTCTTCCEEE
T ss_pred CcEEEEECcC--HHHHHHHHHHhh-----cCCcEEEEEEcC-CHHHHHHHHHHcCC-Cc---ccCCHHHHhcCCCCCEEE
Confidence 3467888842 234344455543 267777766553 44566777777652 11 12455578875 68888
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..+....-.-.+.+|+..|++|++-+.
T Consensus 94 I~tp~~~H~~~~~~al~aGkhVl~EKP 120 (361)
T 3u3x_A 94 SAAVSSERAELAIRAMQHGKDVLVDKP 120 (361)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred EeCChHHHHHHHHHHHHCCCeEEEeCC
Confidence 876555445567899999999998776
No 222
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=25.98 E-value=1.9e+02 Score=20.85 Aligned_cols=101 Identities=9% Similarity=0.067 Sum_probs=55.8
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHH---cCCeEEEeC-C
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN-H 333 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma---~G~PVV~t~-~ 333 (467)
+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=.. .+.-|..+++.+. ...|+|... .
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 4677776554 344666666666554433221111133333 377664322 2344666666653 356766443 3
Q ss_pred CC--ccccccCCCEEeeC--CHHHHHHHHHHHH
Q 012256 334 PS--NDFFKQFPNCRTYD--DRNGFVEATLKAL 362 (467)
Q Consensus 334 g~--~e~v~~~~~g~~~~--~~~~l~~~i~~~l 362 (467)
+. .+....+..+++.. +.+++.+++..++
T Consensus 83 ~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 32 24455566677776 8999999988764
No 223
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=25.95 E-value=3.5e+02 Score=25.37 Aligned_cols=102 Identities=14% Similarity=0.020 Sum_probs=59.8
Q ss_pred cccccccccCCCccccchhhHH---Hh-hcCCC-CCCce--EEEEeccccc--cCHHHHHHHHHHHHhhcCCeEEEEEec
Q 012256 198 SIICNVHGVNPKFLEIGKKKKE---QQ-QNGTH-AFAKG--AYYIGKMVWS--KGYKELLELLDDHQKELAGLEVDLYGN 268 (467)
Q Consensus 198 ~~i~~i~gvd~~~~~~~~~~~~---~~-~~~~~-~~~~~--il~vGrl~~~--Kg~~~li~a~~~l~~~~~~~~l~i~G~ 268 (467)
..+++||+-+.. .|.+.... .. ..+.. -.... +.|+|-+... .=...++.++..+ ++++.+++.
T Consensus 156 ~~vPVINag~g~--HPtQaLaDl~TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~-----G~~v~~~~P 228 (359)
T 1zq6_A 156 SPVPVINMETIT--HPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRM-----GMDVTLLCP 228 (359)
T ss_dssp CSSCEEESSSSC--CHHHHHHHHHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHT-----TCEEEEECS
T ss_pred CCCCEEeCCCCC--CcHHHHHHHHHHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHHc-----CCEEEEEcC
Confidence 467888977765 66543322 11 22220 12445 8899987543 3356777777654 578999996
Q ss_pred C-C---CH---HHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecC
Q 012256 269 G-E---DF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 309 (467)
Q Consensus 269 g-~---~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps 309 (467)
. . +. +.+++.+++.|..+.+. .+.++.+..+||+....
T Consensus 229 ~~~~~~~~~~~~~~~~~a~~~g~~v~~~---~d~~eav~~aDvVyt~~ 273 (359)
T 1zq6_A 229 TPDYILDERYMDWAAQNVAESGGSLQVS---HDIDSAYAGADVVYAKS 273 (359)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHSCEEEEE---CCHHHHHTTCSEEEEEC
T ss_pred ccccCCCHHHHHHHHHHHHHcCCeEEEE---CCHHHHhcCCCEEEECC
Confidence 5 2 21 22334444666555543 34457899999987664
No 224
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=25.94 E-value=59 Score=30.79 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEE
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLV 44 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~ 44 (467)
|+|+..+|+||. ++...+..|..|++.| .+|+++
T Consensus 1 M~~~~~~V~IVG---------aG~aGl~~A~~L~~~G-~~v~v~ 34 (397)
T 2vou_A 1 MSPTTDRIAVVG---------GSISGLTAALMLRDAG-VDVDVY 34 (397)
T ss_dssp -CCCCSEEEEEC---------CSHHHHHHHHHHHHTT-CEEEEE
T ss_pred CCCCCCcEEEEC---------CCHHHHHHHHHHHhCC-CCEEEE
Confidence 666556798883 3445566678899999 344433
No 225
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=25.80 E-value=1.6e+02 Score=25.41 Aligned_cols=126 Identities=11% Similarity=0.148 Sum_probs=72.2
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHHhcCe---
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKV--- 304 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~adv--- 304 (467)
..++|-|.+.....-..+++-+- ...+.+-+.|+..+. +.+. .+... .-.|.|.++..+-.-+.+..
T Consensus 182 ~d~iyggsfrsg~re~kmve~lf-----dtgl~ieffg~~~~~-qfkn--p~~pwt~~pvf~gki~~~~~~~~ns~a~a~ 253 (351)
T 1jg7_A 182 LDVIYGGSFRSGQRESKMVEFLF-----DTGLNIEFFGNAREK-QFKN--PKYPWTKAPVFTGKIPMNMVSEKNSQAIAA 253 (351)
T ss_dssp EEEEEECCCGGGTTHHHHHHHHS-----SCSSCEEEESSCCGG-GCCC--TTSCCSSCCEEEECCCGGGHHHHHTTEEEE
T ss_pred eeeeeccccccCchHHHHHHHHH-----hcCcceeeecchhHH-hccC--CCCCCcCCCccCCcCCHHHHhhccccceEE
Confidence 35888888877666666666552 245666777864331 1110 01111 23566777766622222222
Q ss_pred EEec-C-CCCC-CcHHHHHHHHcCCeEEEeCC-CC-ccccccCCCEEeeCCHHHHHHHHHHHHhcC
Q 012256 305 FLNP-S-TTDV-VCTTTAEALAMGKIVVCANH-PS-NDFFKQFPNCRTYDDRNGFVEATLKALAEE 365 (467)
Q Consensus 305 ~v~p-s-~~e~-~~~~~lEAma~G~PVV~t~~-g~-~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~ 365 (467)
.|+- . +..+ .-.-+-|+||+-.-...-.. .. ..++.+.. +.+.+-+++.+.+.++-+++
T Consensus 254 ~i~gdk~y~~n~it~rvwe~~as~av~~~d~~fd~~~~i~~~a~--fyv~nr~elid~in~~k~~~ 317 (351)
T 1jg7_A 254 LIIGDKNYNDNFITLRVWETMASDAVMLIDEEFDTKHRIINDAR--FYVNNRAELIDRVNELKHSD 317 (351)
T ss_dssp EECCCGGGTTTCCCHHHHHHHTSSSEEEEEGGGCTTCCSCSCGG--GEECSHHHHHHHHHHHHHCH
T ss_pred EEeccccccCCeecHHHHHHHhhhhHhhhhcccCcccccccCce--eEecCHHHHHHHHhhccchH
Confidence 2222 1 1222 34568999998875554444 44 45665533 77789999999999987764
No 226
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=25.65 E-value=2.3e+02 Score=21.75 Aligned_cols=103 Identities=9% Similarity=-0.002 Sum_probs=60.5
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHH---------hcCeEEecCC-CCCCcHHHHHHHHc-
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH---------DYKVFLNPST-TDVVCTTTAEALAM- 324 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~---------~adv~v~ps~-~e~~~~~~lEAma~- 324 (467)
..+++|+.+.+. ...++...+..+....+. .....+ +++. ..|++++=-. .+.-|..+++.+..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~-~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELI-ILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEE-EECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEE-EeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 467888887655 344666666555422222 222222 4444 3577775322 23456777777743
Q ss_pred ----CCeEEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 325 ----GKIVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 325 ----G~PVV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
.+|||.... ... +.+..+..+++.. +.+++.++|..++.
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 467665433 332 3456677788776 99999999988754
No 227
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=25.58 E-value=58 Score=28.01 Aligned_cols=31 Identities=39% Similarity=0.468 Sum_probs=20.2
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEE
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLV 44 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~ 44 (467)
|+.. |+|| |.+..-+..|..|+++| .+|+++
T Consensus 1 Mt~d---V~II---------GaGpaGL~aA~~La~~G-~~V~v~ 31 (336)
T 3kkj_A 1 MTVP---IAII---------GTGIAGLSAAQALTAAG-HQVHLF 31 (336)
T ss_dssp -CCC---EEEE---------CCSHHHHHHHHHHHHTT-CCEEEE
T ss_pred CCCC---EEEE---------CcCHHHHHHHHHHHHCC-CCEEEE
Confidence 6677 8888 33445566678999999 444443
No 228
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=25.52 E-value=3.6e+02 Score=26.26 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=29.4
Q ss_pred HHHHHHhcCeEEecCCCC-CCcHHHHHHHHcCCeEEEeCCCC
Q 012256 295 ADLIFHDYKVFLNPSTTD-VVCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 295 ~~~~~~~adv~v~ps~~e-~~~~~~lEAma~G~PVV~t~~g~ 335 (467)
.++++..||+++..+-.. -+.-..++.|--|.-+|-+..+.
T Consensus 296 LeElL~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 296 LDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp HHHHGGGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred HHHHHhhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence 348899999999765333 34567788888888777766654
No 229
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=25.45 E-value=1.9e+02 Score=20.84 Aligned_cols=103 Identities=8% Similarity=-0.051 Sum_probs=57.1
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCC-CCCCcHHHHHHHH--cCCeEEEeCC-C
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH-P 334 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~-~e~~~~~~lEAma--~G~PVV~t~~-g 334 (467)
+++|+.+.+. ...+.......+..+.........-+.+. ..|+++.=.. .+.-|..+++.+. ...|+|.... .
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 4666766544 33455555555555433221111113333 2477765322 2334566665553 5677765544 3
Q ss_pred Cc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 335 SN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 335 ~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.. ..+..+..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 83 SEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred chHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 32 3455677787776 999999999988764
No 230
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=25.24 E-value=1.4e+02 Score=23.95 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHHhc-----CeEEecCCCCCCcHHHHHHHH-cCCeEEEeCC---CCcc-----
Q 012256 274 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEALA-MGKIVVCANH---PSND----- 337 (467)
Q Consensus 274 ~l~~~~~~~~~~v~~~g~~~~~~--~~~~~a-----dv~v~ps~~e~~~~~~lEAma-~G~PVV~t~~---g~~e----- 337 (467)
.+++.+.+++..+.++-.=...+ +.++.+ .+.++|.-+--.+.++..|++ .++|+|=--. -.+|
T Consensus 33 ~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~ 112 (143)
T 1gqo_A 33 DLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAREEFRHQ 112 (143)
T ss_dssp HHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGGGC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccccccccc
Confidence 35555666676666653322222 333333 367899877778999999975 5778885333 2244
Q ss_pred -ccccCCCEEeeC-CHHHHHHHHHHHH
Q 012256 338 -FFKQFPNCRTYD-DRNGFVEATLKAL 362 (467)
Q Consensus 338 -~v~~~~~g~~~~-~~~~l~~~i~~~l 362 (467)
++.+-..|.++- -.+...-++..++
T Consensus 113 S~~s~~a~GvI~G~G~~gY~lAl~~~~ 139 (143)
T 1gqo_A 113 SVIAPVAKGQIVGLGAEGYKLAVRYLL 139 (143)
T ss_dssp CSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccceeEEEEecCHHHHHHHHHHHH
Confidence 344445677766 6677777776654
No 231
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=24.84 E-value=1.9e+02 Score=23.21 Aligned_cols=90 Identities=10% Similarity=-0.029 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHHhc------CeEEecCCCCCCcHHHHHHHH-cCCeEEEeCC---CCcc----
Q 012256 274 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY------KVFLNPSTTDVVCTTTAEALA-MGKIVVCANH---PSND---- 337 (467)
Q Consensus 274 ~l~~~~~~~~~~v~~~g~~~~~~--~~~~~a------dv~v~ps~~e~~~~~~lEAma-~G~PVV~t~~---g~~e---- 337 (467)
.+++.+.+++..+.++-.=...+ +.++.| .+.++|.-+--.+.++..|++ .++|+|=--. -.+|
T Consensus 32 ~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 111 (149)
T 2uyg_A 32 LCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHAREEFRR 111 (149)
T ss_dssp HHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 35555666676666653322222 444433 267899888888999999975 5789885333 2244
Q ss_pred --ccccCCCEEeeC-CHHHHHHHHHHHHh
Q 012256 338 --FFKQFPNCRTYD-DRNGFVEATLKALA 363 (467)
Q Consensus 338 --~v~~~~~g~~~~-~~~~l~~~i~~~l~ 363 (467)
++.+-..|.++- -.+...-++..++.
T Consensus 112 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 140 (149)
T 2uyg_A 112 HSVTAPACRGIVSGFGPLSYKLALVYLAE 140 (149)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 444545677776 67777777777654
No 232
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.69 E-value=3.5e+02 Score=23.57 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=33.9
Q ss_pred hcCeEEecCCCCCCcHHHHH-HHHcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhcCCC
Q 012256 301 DYKVFLNPSTTDVVCTTTAE-ALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 367 (467)
Q Consensus 301 ~adv~v~ps~~e~~~~~~lE-Ama~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~~~~ 367 (467)
..|.+|+.+... ....++ +...|.|||..+..... .....+..++.+....+...+++....
T Consensus 64 ~vdgiIi~~~~~--~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~ 126 (291)
T 3egc_A 64 RVDGLILAPSEG--EHDYLRTELPKTFPIVAVNRELRI---PGCGAVLSENVRGARTAVEYLIARGHT 126 (291)
T ss_dssp TCSEEEECCCSS--CCHHHHHSSCTTSCEEEESSCCCC---TTCEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCC--ChHHHHHhhccCCCEEEEecccCC---CCCCEEEECcHHHHHHHHHHHHHcCCC
Confidence 456665543332 223444 44679999998874321 111223444666666667777765433
No 233
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=24.69 E-value=56 Score=29.03 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=20.3
Q ss_pred HHHHHHHHhhc-CCeEEEEEecCCCHHH
Q 012256 248 LELLDDHQKEL-AGLEVDLYGNGEDFNQ 274 (467)
Q Consensus 248 i~a~~~l~~~~-~~~~l~i~G~g~~~~~ 274 (467)
...|+++++++ +++.++++|+|.+.++
T Consensus 217 esCFerI~~RFG~k~~yvvIGDG~eEe~ 244 (274)
T 3geb_A 217 ESCFERIMQRFGRKAVYVVIGDGVEEEQ 244 (274)
T ss_dssp HHHHHHHHHHHCTTSEEEEEESSHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEECCCHHHHH
Confidence 34666666555 7899999999988554
No 234
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=24.66 E-value=1.8e+02 Score=26.76 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=58.3
Q ss_pred CCceEEEEecc-ccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCe
Q 012256 228 FAKGAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKV 304 (467)
Q Consensus 228 ~~~~il~vGrl-~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv 304 (467)
.+..+..+|-- .-.+. .+.++.. ..++++++-+-+. +.+..++.+++++. ..+ +.+.++++.. .|+
T Consensus 17 ~~irvgiIG~G~~~g~~---~~~~l~~---~~~~~~lvav~d~-~~~~~~~~a~~~~~-~~~---~~~~~~ll~~~~vD~ 85 (340)
T 1zh8_A 17 RKIRLGIVGCGIAAREL---HLPALKN---LSHLFEITAVTSR-TRSHAEEFAKMVGN-PAV---FDSYEELLESGLVDA 85 (340)
T ss_dssp CCEEEEEECCSHHHHHT---HHHHHHT---TTTTEEEEEEECS-SHHHHHHHHHHHSS-CEE---ESCHHHHHHSSCCSE
T ss_pred CceeEEEEecCHHHHHH---HHHHHHh---CCCceEEEEEEcC-CHHHHHHHHHHhCC-Ccc---cCCHHHHhcCCCCCE
Confidence 35568888852 11222 2444432 1267777655543 44566667777664 122 2445577774 699
Q ss_pred EEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 305 FLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 305 ~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
++..+....-.-.+.+|+..|++|++-+.
T Consensus 86 V~i~tp~~~H~~~~~~al~aGkhVl~EKP 114 (340)
T 1zh8_A 86 VDLTLPVELNLPFIEKALRKGVHVICEKP 114 (340)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred EEEeCCchHHHHHHHHHHHCCCcEEEeCC
Confidence 98887665555567899999999999765
No 235
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=24.55 E-value=82 Score=29.35 Aligned_cols=72 Identities=8% Similarity=-0.007 Sum_probs=48.6
Q ss_pred eeEEecCCCCHH----HHHHhcCeEEecCCCCCCcHHHHHHHH--------cCCeEEEeCC--CCc-cccccCCCEEeeC
Q 012256 285 VVRVYPGRDHAD----LIFHDYKVFLNPSTTDVVCTTTAEALA--------MGKIVVCANH--PSN-DFFKQFPNCRTYD 349 (467)
Q Consensus 285 ~v~~~g~~~~~~----~~~~~adv~v~ps~~e~~~~~~lEAma--------~G~PVV~t~~--g~~-e~v~~~~~g~~~~ 349 (467)
.+.+.|.++.+. ..+..+|++|.+. --.|+..+-.+. .|+|+|-|.. |.. |+-..+. -
T Consensus 241 Gi~~~GP~paDt~F~~~~~~~~D~vlaMY--HDQGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkG~-----A 313 (334)
T 3lxy_A 241 GINLIGPLPADTLFQPKYLQHADAVLAMY--HDQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELAATGT-----A 313 (334)
T ss_dssp TCCEEEEECHHHHTSHHHHTTCSEEEESS--HHHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGGTTTTC-----S
T ss_pred CCceeCCCChHHhcChhhhccCCEEEEcc--cchhhHhHHhcccCccEEEecCCCeeeecCCCCcchhhccCCC-----C
Confidence 345678887766 6778899999873 334555555555 5888887766 443 6654432 2
Q ss_pred CHHHHHHHHHHHHh
Q 012256 350 DRNGFVEATLKALA 363 (467)
Q Consensus 350 ~~~~l~~~i~~~l~ 363 (467)
|+.+|.+||..+++
T Consensus 314 ~~~S~~~Ai~~A~~ 327 (334)
T 3lxy_A 314 DVGSFITALNLAIK 327 (334)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 88899999977654
No 236
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=24.40 E-value=2.4e+02 Score=21.58 Aligned_cols=101 Identities=10% Similarity=-0.069 Sum_probs=60.3
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHHhc--CeEEecC-CCCCCcHHHHHHH-HcCCeEEEe
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDY--KVFLNPS-TTDVVCTTTAEAL-AMGKIVVCA 331 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~a--dv~v~ps-~~e~~~~~~lEAm-a~G~PVV~t 331 (467)
..+++|+-|.+. ...+.+..++.|..+ .+.....+ ++++.. |+.++=- ..+.-|+.+++.+ ..++|||..
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v--~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~l 85 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEV--AATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFA 85 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCC--CBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCB
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEE--EEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEE
Confidence 467888887766 555777777777543 23333444 444443 7766431 2244567777766 467888765
Q ss_pred CC-CCccc-cccCCCEEeeC--CHHHHHHHHHHHH
Q 012256 332 NH-PSNDF-FKQFPNCRTYD--DRNGFVEATLKAL 362 (467)
Q Consensus 332 ~~-g~~e~-v~~~~~g~~~~--~~~~l~~~i~~~l 362 (467)
.. +..+. ..-+..+++.+ +++++.++|.+++
T Consensus 86 Ta~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 86 TGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred ecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 44 43322 22344556665 9999999887654
No 237
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=24.26 E-value=3.4e+02 Score=23.30 Aligned_cols=106 Identities=8% Similarity=-0.008 Sum_probs=58.6
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHHc--CCeEEEeCC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALAM--GKIVVCANH 333 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma~--G~PVV~t~~ 333 (467)
..+++|+.+.+. ...+....+..+..+.........-+.+.. .|++++=- ..+.-|+.+++.+.. .+|||.-..
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~ 116 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTA 116 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEEC
Confidence 356777776554 334555555555433322211111123322 37766532 223345666666543 456665444
Q ss_pred -CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 334 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 334 -g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
... +.+..+..+++.. +.+++.++|..++...
T Consensus 117 ~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 117 RDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 332 4556677788876 9999999999988754
No 238
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=24.23 E-value=61 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=18.0
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHH--HHhhhc
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRA--AYLAKD 36 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~--~~L~~~ 36 (467)
|+|| |++|..+.-|...+ ....+... +.|.+.
T Consensus 3 mM~k---iLiI~gSpr~~~~S-~s~~l~~~~~~~~~~~ 36 (211)
T 3p0r_A 3 AMTK---VLFVKANNRPAEQA-VSVKLYEAFLASYKEA 36 (211)
T ss_dssp -CCE---EEEEECCCSCTTTC-HHHHHHHHHHHHHHHH
T ss_pred ccCE---EEEEEeCCCCCCCC-HHHHHHHHHHHHHHHh
Confidence 6678 99998875432344 22333332 777776
No 239
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=24.22 E-value=1.1e+02 Score=25.16 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=44.1
Q ss_pred eEEecCCCCCCcHHHHHHH-HcCCeEEEeCC---CCcc------ccccCCCEEeeC-CHHHHHHHHHHHHhc
Q 012256 304 VFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSND------FFKQFPNCRTYD-DRNGFVEATLKALAE 364 (467)
Q Consensus 304 v~v~ps~~e~~~~~~lEAm-a~G~PVV~t~~---g~~e------~v~~~~~g~~~~-~~~~l~~~i~~~l~~ 364 (467)
+.++|.-+--.+.++..|+ +.++|+|=--. -.+| ++.+-..|.++- -.+.+.-++..+++.
T Consensus 87 IIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~l~~~ 158 (167)
T 3kip_A 87 VVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLGVYGYTAAIEYALNY 158 (167)
T ss_dssp EEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHTTC
T ss_pred EEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCChhhHHHHHHHHHHH
Confidence 7789987777889999997 56889885443 2345 445556777777 778888888877653
No 240
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=24.20 E-value=3.1e+02 Score=22.77 Aligned_cols=104 Identities=11% Similarity=0.021 Sum_probs=61.2
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecC-CCCCCcHHHHHHHH---cCCeEEEeCC
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA---MGKIVVCANH 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps-~~e~~~~~~lEAma---~G~PVV~t~~ 333 (467)
.+++|+.+.+. ...+.......+..+.........-+.+.. .|+++.=- ..+.-|+.+++.+. ..+|||.-..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 46777776655 344666666656555433221111133333 47776542 23445677777664 3677776544
Q ss_pred -CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 -g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
... +.+..+..+++.. +++++.++|..++..
T Consensus 83 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 83 LSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp SCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 332 3555667777776 999999999998864
No 241
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=24.18 E-value=2.3e+02 Score=21.33 Aligned_cols=104 Identities=12% Similarity=0.036 Sum_probs=57.8
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHH--------cCCeE
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA--------MGKIV 328 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma--------~G~PV 328 (467)
.+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=.. .+.-|..+++.+. ...|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 46788877655 334555555555555444221111133333 477775432 2334666776664 24566
Q ss_pred EEeCC-CCc-cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 329 VCANH-PSN-DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 329 V~t~~-g~~-e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
|.... ... .....+..+++.. +.+++.++|..++..
T Consensus 91 i~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 65443 222 2334445677776 999999999998754
No 242
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=24.07 E-value=1.9e+02 Score=24.10 Aligned_cols=100 Identities=9% Similarity=0.111 Sum_probs=59.4
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHH---HhcCeEEecC-CCCCCcHHHHHHHH---cCCeEEEeCC
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIF---HDYKVFLNPS-TTDVVCTTTAEALA---MGKIVVCANH 333 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~---~~adv~v~ps-~~e~~~~~~lEAma---~G~PVV~t~~ 333 (467)
+++|+.+.+. ...+....+..+ .+.. ....++.+ ...|+++.=- ..+.-|+.+++.+. ..+|||.-..
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~---~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~ 79 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKT---FLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTL 79 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEE---ESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEE---ECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEc
Confidence 5677776554 334555555444 3322 22333222 3458776532 23445666766664 4678776544
Q ss_pred -CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 334 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 334 -g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
... +.+..+..+++.. +.+++.++|..++...
T Consensus 80 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 80 LSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 332 3555677788776 9999999999988763
No 243
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=23.99 E-value=2.1e+02 Score=24.92 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=21.0
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
|+++.....+. -.++.||.-.|.|||+--.
T Consensus 159 dll~v~Dp~~e-~~ai~EA~~l~IPvIaivD 188 (231)
T 3bbn_B 159 DIVIIVDQQEE-YTALRECITLGIPTICLID 188 (231)
T ss_dssp SEEEESCTTTT-HHHHHHHHTTTCCEEECCC
T ss_pred CEEEEeCCccc-cHHHHHHHHhCCCEEEEec
Confidence 56554432222 4789999999999999643
No 244
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=23.82 E-value=89 Score=27.49 Aligned_cols=73 Identities=14% Similarity=-0.011 Sum_probs=41.4
Q ss_pred CCeEEEEEec----CCCHHHHHHHHHhcCCeeEEecC---CCCHH-H------------HHHhcC-eEEecCCCCCCcHH
Q 012256 259 AGLEVDLYGN----GEDFNQIQEAAEKLKIVVRVYPG---RDHAD-L------------IFHDYK-VFLNPSTTDVVCTT 317 (467)
Q Consensus 259 ~~~~l~i~G~----g~~~~~l~~~~~~~~~~v~~~g~---~~~~~-~------------~~~~ad-v~v~ps~~e~~~~~ 317 (467)
.+..|.|.|. +..+.+++++++..|-.+.--|. +.... . -....+ .++... ...-..+
T Consensus 4 ~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~-~~~rt~K 82 (241)
T 2vxb_A 4 DDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSD-TFSRKVK 82 (241)
T ss_dssp TTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECS-SCCCCHH
T ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcC-CCCCcHH
Confidence 4567778776 24578899999988743210011 10000 0 011112 333332 2345678
Q ss_pred HHHHHHcCCeEEEeC
Q 012256 318 TAEALAMGKIVVCAN 332 (467)
Q Consensus 318 ~lEAma~G~PVV~t~ 332 (467)
.+.|+|.|.|||..+
T Consensus 83 ~~~ala~gipiV~~~ 97 (241)
T 2vxb_A 83 YLEALAFNIPCVHPQ 97 (241)
T ss_dssp HHHHHHHTCCEECTH
T ss_pred HHHHHHcCCCEecHH
Confidence 999999999999874
No 245
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=23.78 E-value=55 Score=30.81 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=20.2
Q ss_pred CCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEE
Q 012256 2 DRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLV 44 (467)
Q Consensus 2 ~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~ 44 (467)
+|| |+|| |++..-+..|..|+++| ++|+++
T Consensus 1 sm~---V~IV---------GaGpaGl~~A~~L~~~G-~~v~v~ 30 (412)
T 4hb9_A 1 SMH---VGII---------GAGIGGTCLAHGLRKHG-IKVTIY 30 (412)
T ss_dssp CCE---EEEE---------CCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred CCE---EEEE---------CcCHHHHHHHHHHHhCC-CCEEEE
Confidence 477 9998 33445576778899999 334333
No 246
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=23.69 E-value=2.4e+02 Score=21.28 Aligned_cols=104 Identities=6% Similarity=-0.015 Sum_probs=60.2
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHH---HHHHh--cCeEEecCC-CCCCcHHHHHHHHc---CCeEE
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALAM---GKIVV 329 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~---~~~~~--adv~v~ps~-~e~~~~~~lEAma~---G~PVV 329 (467)
..+++|+.+.+. ...+.+.....+ ...+.+.....+ +.+.. .|+++.=.. .+.-|..+++.+.. ..|||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~-~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 87 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHS-QMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEE
Confidence 467888887655 344555555542 223233333333 33333 477775432 34456777777753 44554
Q ss_pred -EeCCCC--ccccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 330 -CANHPS--NDFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 330 -~t~~g~--~e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
.|.... .+.+..+..+++.. +.+++.++|..++..
T Consensus 88 ~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 88 FITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 343332 24566677787776 999999999988764
No 247
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.60 E-value=2.8e+02 Score=25.23 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCCCCCC
Q 012256 420 EEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 463 (467)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 463 (467)
+.+...+..++...+....+|+.....-....+.+++.|+..|+
T Consensus 190 ~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~ 233 (350)
T 3h75_A 190 ERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGT 233 (350)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCC
Confidence 34444555555544444556665444444677888889987764
No 248
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=23.59 E-value=2.2e+02 Score=26.38 Aligned_cols=93 Identities=8% Similarity=0.068 Sum_probs=56.8
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCC--eeEEecCCCCHHHHHH--hcCeE
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFH--DYKVF 305 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~--~adv~ 305 (467)
..+..+|--.- | ..+++++.. .++++++-+-+. +.+..++.+++++. ....+ ...++++. ..|++
T Consensus 7 ~~vgiiG~G~i--g-~~~~~~l~~----~~~~~lv~v~d~-~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~D~V 75 (362)
T 1ydw_A 7 IRIGVMGCADI--A-RKVSRAIHL----APNATISGVASR-SLEKAKAFATANNYPESTKIH---GSYESLLEDPEIDAL 75 (362)
T ss_dssp EEEEEESCCTT--H-HHHHHHHHH----CTTEEEEEEECS-SHHHHHHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEE
T ss_pred eEEEEECchHH--H-HHHHHHHhh----CCCcEEEEEEcC-CHHHHHHHHHHhCCCCCCeee---CCHHHHhcCCCCCEE
Confidence 45777764111 1 134555432 467777655543 34556666776664 12322 34457776 47999
Q ss_pred EecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 306 LNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 306 v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+..+......-.+.+|+..|++|++-+.
T Consensus 76 ~i~tp~~~h~~~~~~al~aGk~V~~EKP 103 (362)
T 1ydw_A 76 YVPLPTSLHVEWAIKAAEKGKHILLEKP 103 (362)
T ss_dssp EECCCGGGHHHHHHHHHTTTCEEEECSS
T ss_pred EEcCChHHHHHHHHHHHHCCCeEEEecC
Confidence 9887666555667889999999998653
No 249
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=23.55 E-value=2.2e+02 Score=26.35 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=58.1
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v 306 (467)
+..+.++|--.- |...++.++.. .++++++-+-+. +.+..++.+++++... +...++++. ..|+++
T Consensus 27 ~~rigiIG~G~~--g~~~~~~~l~~----~~~~~l~av~d~-~~~~~~~~a~~~g~~~-----~~~~~~ll~~~~~D~V~ 94 (350)
T 3rc1_A 27 PIRVGVIGCADI--AWRRALPALEA----EPLTEVTAIASR-RWDRAKRFTERFGGEP-----VEGYPALLERDDVDAVY 94 (350)
T ss_dssp CEEEEEESCCHH--HHHTHHHHHHH----CTTEEEEEEEES-SHHHHHHHHHHHCSEE-----EESHHHHHTCTTCSEEE
T ss_pred ceEEEEEcCcHH--HHHHHHHHHHh----CCCeEEEEEEcC-CHHHHHHHHHHcCCCC-----cCCHHHHhcCCCCCEEE
Confidence 456888875211 11123445433 467777644443 3456666777766532 144457776 479998
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..+....-.-.+.+|+..|++|++-+.
T Consensus 95 i~tp~~~h~~~~~~al~aGk~Vl~EKP 121 (350)
T 3rc1_A 95 VPLPAVLHAEWIDRALRAGKHVLAEKP 121 (350)
T ss_dssp ECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred ECCCcHHHHHHHHHHHHCCCcEEEeCC
Confidence 887666555667899999999998765
No 250
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=23.45 E-value=51 Score=28.60 Aligned_cols=63 Identities=13% Similarity=-0.016 Sum_probs=40.9
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+.++.+-|-.+. .+.+.+.++.+|..+ ... ...+.-+|.+.. .-..+.+.|++.|+|||..+-
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~v------~~~---~~~~THLI~~~~--~rT~K~l~A~~~g~~IVs~~W 79 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGEV------AES---AQKCTHLIASKV--TRTVKFLTAISVVKHIVTPEW 79 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCEE------CSS---GGGCSEEECSSC--CCCHHHHHHTTTCSEEECHHH
T ss_pred CeEEEEeCCChHHHHHHHHHHHHCCCEE------eCC---CCCceEEEECCC--CCCHHHHHHHHcCCCEecHHH
Confidence 456677674332 456777888777432 111 266777787642 123689999999999998764
No 251
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=23.35 E-value=2.8e+02 Score=25.16 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=44.3
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeC
Q 012256 259 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 259 ~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~ 332 (467)
++++++-+-+ .+.+..++.+++++.. ..+...++++. ..|+++..+......-.+.+|+..|++|++-+
T Consensus 23 ~~~~~vav~d-~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ek 93 (332)
T 2glx_A 23 TGGEVVSMMS-TSAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEK 93 (332)
T ss_dssp TTCEEEEEEC-SCHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCeEEEEEC-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEEEeC
Confidence 4666654443 2334556666665532 12344557776 48999988766555566788999999999854
No 252
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=23.23 E-value=2.2e+02 Score=20.68 Aligned_cols=104 Identities=10% Similarity=-0.037 Sum_probs=59.6
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHH--cCCeEEEeCC-
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH- 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma--~G~PVV~t~~- 333 (467)
.+++|+.+.+. ...+.+..+..+..+..........+++.. .|+++.=.. .+.-|..+++.+. ...|+|....
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESS
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECC
Confidence 35677776554 344666666556555433221111133433 477765322 2345667777764 3567765433
Q ss_pred CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
+.. +.+..+..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 83 SDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp CCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 332 3455677787776 999999999887653
No 253
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=23.14 E-value=2.3e+02 Score=25.61 Aligned_cols=70 Identities=11% Similarity=0.015 Sum_probs=43.0
Q ss_pred cCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHhcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 258 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 258 ~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.++++++-+-+... +..++.++..+.. ..+..+++-...|+++..+......-.+.+|+..|++|++-+.
T Consensus 28 ~~~~~lvav~d~~~-~~~~~~~~~~g~~-----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP 97 (319)
T 1tlt_A 28 ASDWTLQGAWSPTR-AKALPICESWRIP-----YADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKP 97 (319)
T ss_dssp CSSEEEEEEECSSC-TTHHHHHHHHTCC-----BCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEESS
T ss_pred CCCeEEEEEECCCH-HHHHHHHHHcCCC-----ccCcHHHhhcCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeCC
Confidence 46777773333222 2344445555533 2334445545679999887666555567789999999998653
No 254
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=22.87 E-value=3.3e+02 Score=24.76 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=55.4
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFL 306 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v 306 (467)
+..+.++|--. -|. ..+.++. +..++++++.+-+. +.+..++.+++++.. .++ ...++++. ..|+++
T Consensus 8 ~~~v~iiG~G~--ig~-~~~~~l~---~~~~~~~~vav~d~-~~~~~~~~a~~~g~~-~~~---~~~~~~l~~~~~D~V~ 76 (346)
T 3cea_A 8 PLRAAIIGLGR--LGE-RHARHLV---NKIQGVKLVAACAL-DSNQLEWAKNELGVE-TTY---TNYKDMIDTENIDAIF 76 (346)
T ss_dssp CEEEEEECCST--THH-HHHHHHH---HTCSSEEEEEEECS-CHHHHHHHHHTTCCS-EEE---SCHHHHHTTSCCSEEE
T ss_pred cceEEEEcCCH--HHH-HHHHHHH---hcCCCcEEEEEecC-CHHHHHHHHHHhCCC-ccc---CCHHHHhcCCCCCEEE
Confidence 44677777421 121 2334432 13467776655443 345566666666542 222 34457776 579998
Q ss_pred ecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 307 NPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 307 ~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..+......-.+.+|+..|++|++-+.
T Consensus 77 i~tp~~~h~~~~~~al~~G~~v~~eKp 103 (346)
T 3cea_A 77 IVAPTPFHPEMTIYAMNAGLNVFCEKP 103 (346)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred EeCChHhHHHHHHHHHHCCCEEEEcCC
Confidence 877665555567789999999998543
No 255
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=22.86 E-value=2.1e+02 Score=26.20 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=46.5
Q ss_pred CeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 260 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 260 ~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+++++-+-+ .+.+..++.+++.+.. .. +...++++. ..|+++..+....-.-.+.+|+..|++|++-+.
T Consensus 28 ~~~l~av~d-~~~~~a~~~a~~~~~~-~~---~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP 98 (334)
T 3ohs_X 28 EHQVVAVAA-RDLSRAKEFAQKHDIP-KA---YGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKP 98 (334)
T ss_dssp TEEEEEEEC-SSHHHHHHHHHHHTCS-CE---ESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CeEEEEEEc-CCHHHHHHHHHHcCCC-cc---cCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECC
Confidence 355555544 3445667777776642 11 244457887 579999887665555568899999999999875
No 256
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=22.73 E-value=52 Score=24.94 Aligned_cols=30 Identities=37% Similarity=0.357 Sum_probs=17.2
Q ss_pred CCCCCceEEEEEeccCCccccccchhHH-HH--HHhhhcC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLF-RA--AYLAKDG 37 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~-~~--~~L~~~G 37 (467)
|.|| |+.||... +|.++..+. .+ +.-.++|
T Consensus 1 m~mk---ivaVtaCp----tGiAhTymAAeaLekaA~~~G 33 (106)
T 2m1z_A 1 MKRK---IIAVTACA----TGVAHTYMAAQALKKGAKKMG 33 (106)
T ss_dssp CCCE---EEEEEECS----SCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcc---EEEEEECC----CcHHHHHHHHHHHHHHHHHCC
Confidence 6778 98777653 465544441 12 4445667
No 257
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=22.65 E-value=3.7e+02 Score=23.16 Aligned_cols=104 Identities=4% Similarity=-0.050 Sum_probs=52.7
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEec-CCCCCCcHHHHHHH---HcCCeEEEeCC
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNP-STTDVVCTTTAEAL---AMGKIVVCANH 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~p-s~~e~~~~~~lEAm---a~G~PVV~t~~ 333 (467)
.+++|+.+.+. ...+....+..|..+.........-+++.. .|++++= ...+.-|..+++.+ ...+|||....
T Consensus 130 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~ 209 (254)
T 2ayx_A 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTA 209 (254)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEES
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence 44555554443 233444444444443322221111123332 3555532 11223355555544 34678776544
Q ss_pred -CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 -g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
... +.+..+.++++.. +.+++.++|..++..
T Consensus 210 ~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 210 NALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp STTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHH
Confidence 322 3555667777776 999999999887753
No 258
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.09 E-value=2.5e+02 Score=21.04 Aligned_cols=104 Identities=9% Similarity=0.009 Sum_probs=62.2
Q ss_pred CeEEEEEecCCC-HHHHHHHHHhcCC--eeEEecCCCCHHHHHHh--------cCeEEecCC-CCCCcHHHHHHHH----
Q 012256 260 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFHD--------YKVFLNPST-TDVVCTTTAEALA---- 323 (467)
Q Consensus 260 ~~~l~i~G~g~~-~~~l~~~~~~~~~--~v~~~g~~~~~~~~~~~--------adv~v~ps~-~e~~~~~~lEAma---- 323 (467)
..+++|+.+.+. ...+.+..+..+. .+.........-+.+.. .|+++.=.. .+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 356778877655 4456666666665 44443332222245543 577775432 3445677777775
Q ss_pred -cCCeEEEeCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHh
Q 012256 324 -MGKIVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 363 (467)
Q Consensus 324 -~G~PVV~t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~ 363 (467)
..+|||.... ... +.+..+..+++.. +.+++.+++.....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 4677766544 322 3455666777776 99999999776544
No 259
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=21.96 E-value=1.3e+02 Score=24.37 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=52.5
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHHHhc-----CeEEecCCCCCCcHHHHHHH-HcCCeEEEeCC---CCcc------
Q 012256 275 IQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSND------ 337 (467)
Q Consensus 275 l~~~~~~~~~~v~~~g~~~~~~--~~~~~a-----dv~v~ps~~e~~~~~~lEAm-a~G~PVV~t~~---g~~e------ 337 (467)
+++.+.+++..+.++-.=...+ +.++.+ .+.++|.-+--.+.++..|+ +.++|+|=--. -.+|
T Consensus 35 l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~S 114 (154)
T 1uqr_A 35 LQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAREPFRHHS 114 (154)
T ss_dssp HHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGSCGGGSCC
T ss_pred HHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCccccccccccc
Confidence 4555566666666553222222 444444 36789977777788999997 56889985433 2244
Q ss_pred ccccCCCEEeeC-CHHHHHHHHHHHH
Q 012256 338 FFKQFPNCRTYD-DRNGFVEATLKAL 362 (467)
Q Consensus 338 ~v~~~~~g~~~~-~~~~l~~~i~~~l 362 (467)
++.+-..|.++- -.+...-++..++
T Consensus 115 ~~s~~a~GvI~G~G~~gY~lAl~a~~ 140 (154)
T 1uqr_A 115 YLSDVAKGVICGLGAKGYDYALDFAI 140 (154)
T ss_dssp SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccCcceeEEEEecCHHHHHHHHHHHH
Confidence 444445677766 5566665555544
No 260
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=21.93 E-value=3.3e+02 Score=25.70 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=61.4
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhc----CCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--c
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKEL----AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--Y 302 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--a 302 (467)
+..|..+|--.-.+ ..++++..+.... ++++++-+-+ .+.+..++.+++++.. ++ +.+-++++.. .
T Consensus 26 klrvgiIG~G~ig~---~h~~~~~~~~~~~~~~~~~~elvav~d-~~~~~a~~~a~~~~~~-~~---y~d~~~ll~~~~v 97 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQ---AHADAYRRAAMFYPDLPKRPHLYALAD-QDQAMAERHAAKLGAE-KA---YGDWRELVNDPQV 97 (412)
T ss_dssp EEEEEEECCSHHHH---HHHHHHHHHHHHCTTSSSEEEEEEEEC-SSHHHHHHHHHHHTCS-EE---ESSHHHHHHCTTC
T ss_pred cceEEEEcCcHHHH---HHHHHHHhccccccccCCCeEEEEEEc-CCHHHHHHHHHHcCCC-eE---ECCHHHHhcCCCC
Confidence 45677887422222 3455665554322 2455554444 4556777778887753 22 2344577864 5
Q ss_pred CeEEecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 303 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 303 dv~v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
|+++..+....-.-.+++|+..|++|++-+.
T Consensus 98 D~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 128 (412)
T 4gqa_A 98 DVVDITSPNHLHYTMAMAAIAAGKHVYCEKP 128 (412)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred CEEEECCCcHHHHHHHHHHHHcCCCeEeecC
Confidence 8888877666666678999999999999886
No 261
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=21.91 E-value=98 Score=25.36 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=38.5
Q ss_pred HHHHhcCeEEecCCCCCCcHHHHH---HHHcCCeEEEeCCCC-----ccccccCCC-----EEeeCCHHHHHHHHHHHHh
Q 012256 297 LIFHDYKVFLNPSTTDVVCTTTAE---ALAMGKIVVCANHPS-----NDFFKQFPN-----CRTYDDRNGFVEATLKALA 363 (467)
Q Consensus 297 ~~~~~adv~v~ps~~e~~~~~~lE---Ama~G~PVV~t~~g~-----~e~v~~~~~-----g~~~~~~~~l~~~i~~~l~ 363 (467)
+.++.||++|.--. +.-.-+.+| |.|.|+|||+-.... +-.+..... .+.+ |.+++.+.|...+.
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~~~~~~~~~~y-~~~el~~~l~~~~~ 150 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDY-AEGEVETMLDRYFE 150 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTCCSSSEEEEEC-CTTTHHHHHHHHHH
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccCccceeEEEec-CHHHHHHHHHHHHH
Confidence 78999999876321 333444444 689999999964322 111111111 1233 77777777777766
Q ss_pred c
Q 012256 364 E 364 (467)
Q Consensus 364 ~ 364 (467)
.
T Consensus 151 ~ 151 (165)
T 2khz_A 151 A 151 (165)
T ss_dssp T
T ss_pred h
Confidence 4
No 262
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=21.76 E-value=4.8e+02 Score=24.70 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=48.7
Q ss_pred cCCeEEEE-EecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh-------cCeEEecCCCCCCcHHHHHHHHcCCeEE
Q 012256 258 LAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD-------YKVFLNPSTTDVVCTTTAEALAMGKIVV 329 (467)
Q Consensus 258 ~~~~~l~i-~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~-------adv~v~ps~~e~~~~~~lEAma~G~PVV 329 (467)
.++++++- +- ..+.+..++.+++++... ...+...++++.. .|+++..+....-.-.+.+|+..|++|+
T Consensus 62 ~~~~~lva~v~-d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl 138 (417)
T 3v5n_A 62 DDHYELVAGAL-SSTPEKAEASGRELGLDP--SRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVI 138 (417)
T ss_dssp TSCEEEEEEEC-CSSHHHHHHHHHHHTCCG--GGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEE
T ss_pred CCCcEEEEEEe-CCCHHHHHHHHHHcCCCc--ccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEE
Confidence 45666653 32 334566677777766420 0123455588877 7999888776666667889999999999
Q ss_pred EeCC
Q 012256 330 CANH 333 (467)
Q Consensus 330 ~t~~ 333 (467)
+-+.
T Consensus 139 ~EKP 142 (417)
T 3v5n_A 139 CDKP 142 (417)
T ss_dssp EESS
T ss_pred EECC
Confidence 8776
No 263
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=21.50 E-value=65 Score=29.44 Aligned_cols=32 Identities=31% Similarity=0.231 Sum_probs=20.5
Q ss_pred CCCCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeecCCCCCccccCC
Q 012256 1 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWLSLIDQKLVYPE 59 (467)
Q Consensus 1 m~Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l~~~~~v~v~~~ 59 (467)
|+|| |+|+.... -....+..|+ .| ++|.++..
T Consensus 1 M~mk---I~IiGaGa---------~G~~~a~~L~-~g--------------~~V~~~~r 32 (307)
T 3ego_A 1 MSLK---IGIIGGGS---------VGLLCAYYLS-LY--------------HDVTVVTR 32 (307)
T ss_dssp -CCE---EEEECCSH---------HHHHHHHHHH-TT--------------SEEEEECS
T ss_pred CCCE---EEEECCCH---------HHHHHHHHHh-cC--------------CceEEEEC
Confidence 7888 99994432 2233457788 89 88877654
No 264
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=21.31 E-value=54 Score=25.58 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=18.6
Q ss_pred EEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 8 IAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 8 I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
++|+.+.. |+..-.+.+.+..+..+.+.|
T Consensus 3 ~~iiv~~~-p~~~~~~~~al~~a~a~~~~g 31 (130)
T 2hy5_A 3 FALQINEG-PYQHQASDSAYQFAKAALEKG 31 (130)
T ss_dssp EEEEECSC-TTTSTHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCC-CCCcHHHHHHHHHHHHHHhcC
Confidence 88888775 553332434455568888889
No 265
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=21.27 E-value=71 Score=29.58 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
.||+.+.|+.+.+.|.-.- -+.-+..+..|.+.|..+||+++||+
T Consensus 52 vrg~dV~iiqs~~~p~nd~-lmeLl~~idA~k~asA~rIt~ViPY~ 96 (319)
T 3dah_A 52 VRGKDVFVLQSTCAPTNDN-LMELMIMVDALKRASAGRITAAIPYF 96 (319)
T ss_dssp CBTCEEEEECCCCSSHHHH-HHHHHHHHHHHHHTTBSEEEEEESSC
T ss_pred cCCCeEEEEccCCCCCcHH-HHHHHHHHHHHHHcCCcEEEEEccCc
Confidence 3567788887766563221 22223334889998888999999985
No 266
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=21.24 E-value=2.1e+02 Score=26.16 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=52.4
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEe
Q 012256 230 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLN 307 (467)
Q Consensus 230 ~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ 307 (467)
..+.++|--.- | ..+++++.. .++++++-+-+... +..++.+++.+.. ..+...++++. ..|+++.
T Consensus 6 ~rigiiG~G~i--g-~~~~~~l~~----~~~~~~~av~d~~~-~~~~~~a~~~~~~----~~~~~~~~ll~~~~~D~V~i 73 (329)
T 3evn_A 6 VRYGVVSTAKV--A-PRFIEGVRL----AGNGEVVAVSSRTL-ESAQAFANKYHLP----KAYDKLEDMLADESIDVIYV 73 (329)
T ss_dssp EEEEEEBCCTT--H-HHHHHHHHH----HCSEEEEEEECSCS-STTCC---CCCCS----CEESCHHHHHTCTTCCEEEE
T ss_pred eEEEEEechHH--H-HHHHHHHHh----CCCcEEEEEEcCCH-HHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEE
Confidence 45667765211 1 234555543 36777665544322 2233334444421 11244557887 6799988
Q ss_pred cCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 308 PSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 308 ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
.+....-.-.+.+|+..|++|++-+.
T Consensus 74 ~tp~~~h~~~~~~al~aGk~Vl~EKP 99 (329)
T 3evn_A 74 ATINQDHYKVAKAALLAGKHVLVEKP 99 (329)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEccC
Confidence 77665555567899999999998775
No 267
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=21.23 E-value=91 Score=30.50 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=27.6
Q ss_pred ceEEEEEeccCCccccccchhHHHH-HHhhhcCCccEEEEeeecC
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRA-AYLAKDGETRVTLVIPWLS 49 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~-~~L~~~G~~~V~~~~p~l~ 49 (467)
++|.|.|++|.|.. .+..+ ...+++| .+|++++|..+
T Consensus 272 ~~I~I~tpYf~p~~------~~~~aL~~Aa~rG-V~VrIi~~~~~ 309 (458)
T 3hsi_A 272 KKLVICTPYFNFPR------TLQHKIATLLENG-KRVEIIVGDKV 309 (458)
T ss_dssp SEEEEECSSSCCCH------HHHHHHHHHHTTT-CEEEEEEECGG
T ss_pred cEEEEEEeccCCCH------HHHHHHHHHHHCC-CeEEEEECCcc
Confidence 56999999998763 23333 6667888 89999999865
No 268
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=21.05 E-value=2.5e+02 Score=26.99 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=63.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEEEecCCC--HHHHHHHHHhcCCeeEEe--cCCCCHH-HHHHhcCeEEecCCCCCCc
Q 012256 241 SKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVY--PGRDHAD-LIFHDYKVFLNPSTTDVVC 315 (467)
Q Consensus 241 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~~~v~~~--g~~~~~~-~~~~~adv~v~ps~~e~~~ 315 (467)
..|++..++++-+.....++-.+.|+|.-+. ..+++++.++.|+++... +. ...+ .-+..|.+-+..+.. .
T Consensus 164 ~~G~~~a~~al~~~~~~~~~~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~~~A~~niv~~~~-~-- 239 (437)
T 3aek_A 164 TQGEDTCLAAMVPTLDTTEAAELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAVGPNTRFILAQPF-L-- 239 (437)
T ss_dssp THHHHHHHHHHGGGSCBCCCCCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCBCTTCEEEESSTT-C--
T ss_pred HHHHHHHHHHHHHHhcccCCCcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhhhcCcEEEEECcc-H--
Confidence 5677777777643211112446888886332 268999999999977655 33 3333 445555665554322 1
Q ss_pred HHHHHHH-HcCCeEEEeCCCCccccccCCCEEeeCCHHHHHHHHHHHHhc
Q 012256 316 TTTAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 364 (467)
Q Consensus 316 ~~~lEAm-a~G~PVV~t~~g~~e~v~~~~~g~~~~~~~~l~~~i~~~l~~ 364 (467)
..+.+.| -+|.|.+....+- -.++.+++..+|.+++..
T Consensus 240 ~~~A~~Le~~GiP~i~~~~P~-----------G~~~T~~~l~~la~~~g~ 278 (437)
T 3aek_A 240 GETTGALERRGAKRIAAPFPF-----------GEEGTTLWLKAVADAYGV 278 (437)
T ss_dssp HHHHHHHHHTTCEECCCCCSC-----------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCeEecCCCc-----------CHHHHHHHHHHHHHHHCC
Confidence 3333433 4688988865421 111456777777777654
No 269
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=21.00 E-value=2.2e+02 Score=26.12 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=48.1
Q ss_pred cCCeEEEEEecCC---CHHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHHHHHHHHcCCeEEEeC
Q 012256 258 LAGLEVDLYGNGE---DFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 332 (467)
Q Consensus 258 ~~~~~l~i~G~g~---~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~~lEAma~G~PVV~t~ 332 (467)
.++++++-+-+.. ..+.+.+..++.+..... +.+.++++.. .|+++..+....-.-.+.+|+..|++|++-+
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 98 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKK---YNNWWEMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEK 98 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEE---CSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcc---cCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeC
Confidence 4678887666543 234556666665643332 3455577775 6888887655444456899999999999876
Q ss_pred C
Q 012256 333 H 333 (467)
Q Consensus 333 ~ 333 (467)
.
T Consensus 99 P 99 (337)
T 3ip3_A 99 P 99 (337)
T ss_dssp S
T ss_pred C
Confidence 5
No 270
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=20.93 E-value=2.4e+02 Score=23.56 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=58.0
Q ss_pred EEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCCCCCCcHHHHHHHH--c-CCeEEEeCC-C
Q 012256 262 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALA--M-GKIVVCANH-P 334 (467)
Q Consensus 262 ~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~~e~~~~~~lEAma--~-G~PVV~t~~-g 334 (467)
+++|+.+.+. ...+.......+..+.........-+.+.. .|++++| +.-|+.+++.+. . .+|||.-.. .
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt~~~ 78 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNP 78 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEESSC
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEECCC
Confidence 3566665544 344555555555554432221111133332 4888844 334566666654 2 678776544 3
Q ss_pred Cc----cccccCCCEEeeC---CHHHHHHHHHHHHhcC
Q 012256 335 SN----DFFKQFPNCRTYD---DRNGFVEATLKALAEE 365 (467)
Q Consensus 335 ~~----e~v~~~~~g~~~~---~~~~l~~~i~~~l~~~ 365 (467)
.. +.+..+..+++.. +.+++.++|..++...
T Consensus 79 ~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 79 TSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp CHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 32 3556677787765 6899999999988764
No 271
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=20.93 E-value=51 Score=25.96 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=20.4
Q ss_pred ceEEEEEeccCCccccccchhHHHHHHhhhcC
Q 012256 6 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG 37 (467)
Q Consensus 6 ~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G 37 (467)
+|++|+.+.. |+....+...+..|...+..|
T Consensus 16 ~kl~ii~~sg-P~~~~~~~~al~lA~~A~a~g 46 (134)
T 3mc3_A 16 XXILIVVTHG-PEDLDRTYAPLFMASISASME 46 (134)
T ss_dssp CEEEEEECCC-GGGTHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEccC-CCCHHHHHHHHHHHHHHHHCC
Confidence 4588888775 554444545666666677788
No 272
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=20.92 E-value=2.9e+02 Score=21.22 Aligned_cols=75 Identities=11% Similarity=-0.003 Sum_probs=44.2
Q ss_pred CceEEEEeccccccC--HHHHHHHHHHHHhhc---CCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCC-HHHHHHhc
Q 012256 229 AKGAYYIGKMVWSKG--YKELLELLDDHQKEL---AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDH-ADLIFHDY 302 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg--~~~li~a~~~l~~~~---~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~-~~~~~~~a 302 (467)
+++++++.. .+-.. ....+..+.++.+++ .++.++.+....+.+.+++.+++.+++..++..... ..++....
T Consensus 34 k~vll~F~a-~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 112 (150)
T 3fw2_A 34 KSLLINFWA-SWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQY 112 (150)
T ss_dssp SEEEEEEEC-TTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred CEEEEEEEe-CCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHc
Confidence 555554443 34444 566666777776555 456666666566667888888888876554422211 12566665
Q ss_pred Ce
Q 012256 303 KV 304 (467)
Q Consensus 303 dv 304 (467)
.+
T Consensus 113 ~v 114 (150)
T 3fw2_A 113 SI 114 (150)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 273
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=20.86 E-value=3.8e+02 Score=24.61 Aligned_cols=80 Identities=9% Similarity=0.060 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecC--------------C-CCHHHHHHhcCeEEecCCC
Q 012256 247 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG--------------R-DHADLIFHDYKVFLNPSTT 311 (467)
Q Consensus 247 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~--------------~-~~~~~~~~~adv~v~ps~~ 311 (467)
+++++. ..|+++++-+.+.. .+.....++..+..+ +|. + .+.++++...|+++..+-.
T Consensus 17 ~~r~l~----~~~~~elvav~d~~-~~~~~~~~~~~g~~~--~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~ 89 (334)
T 2czc_A 17 VAYAVT----KQDDMELIGITKTK-PDFEAYRAKELGIPV--YAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPG 89 (334)
T ss_dssp HHHHHH----TCTTEEEEEEEESS-CSHHHHHHHHTTCCE--EESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCST
T ss_pred HHHHHh----cCCCCEEEEEEcCC-HHHHHHHHHhcCccc--cccccccceeccCCceEEcCcHHHhccCCCEEEECCCc
Confidence 455553 25788887777643 244445555554332 221 1 2334777788998887644
Q ss_pred CCCcHHHHHHHHcCCeEEEeCC
Q 012256 312 DVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 312 e~~~~~~lEAma~G~PVV~t~~ 333 (467)
..---....++..|++||++..
T Consensus 90 ~~h~~~a~~~l~aGk~Vi~sap 111 (334)
T 2czc_A 90 GIGAKNKPLYEKAGVKAIFQGG 111 (334)
T ss_dssp THHHHHHHHHHHHTCEEEECTT
T ss_pred cccHHHHHHHHHcCCceEeecc
Confidence 3312233478889999997753
No 274
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.73 E-value=4.1e+02 Score=22.99 Aligned_cols=44 Identities=14% Similarity=-0.053 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCCccceEeeecCCCCCchHHHHHHhCCCCCC
Q 012256 420 EEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 463 (467)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 463 (467)
+.+...+..++...+....+|+.....-.-..+.+++.|+..|+
T Consensus 177 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~ 220 (292)
T 3k4h_A 177 ESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPK 220 (292)
T ss_dssp HHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCCCCCC
Confidence 44555566666665445566665443334567889999997774
No 275
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=20.69 E-value=76 Score=29.49 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCCceEEEEEeccCCccccccchhHHHHHHhhhcCCccEEEEeeec
Q 012256 3 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGETRVTLVIPWL 48 (467)
Q Consensus 3 Mk~~~I~iv~~~~~P~~~G~~~~~~~~~~~L~~~G~~~V~~~~p~l 48 (467)
.||+.+.|+.+.+.|.-.- -+.-+..+..|.+.|..+||.++||+
T Consensus 48 vrg~dV~iiqs~~~p~nd~-lmeLl~~idA~k~asA~rIt~ViPY~ 92 (326)
T 3s5j_B 48 VRGEDVYIVQSGCGEINDN-LMELLIMINACKIASASRVTAVIPCF 92 (326)
T ss_dssp CTTCEEEEECCCCSCHHHH-HHHHHHHHHHHHHTTCSEEEEEESSC
T ss_pred cCCCcEEEEecCCCCccHH-HHHHHHHHHHHHhcCCcEEEEeccCc
Confidence 3567788888777553221 22222333889988888999999985
No 276
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.61 E-value=3.1e+02 Score=22.89 Aligned_cols=105 Identities=11% Similarity=-0.008 Sum_probs=60.6
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHH--hcCeEEecC-CCCCCcHHHHHHHH--cCCeEEEeCC-
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALA--MGKIVVCANH- 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~v~ps-~~e~~~~~~lEAma--~G~PVV~t~~- 333 (467)
.+++|+.+.+. ...+....+..+..+.........-+.+. ..|++++=- ..+.-|+.+++.+. ..+|||.-..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 46777776655 34466666665655443222111113333 247776542 23345666666654 4677776544
Q ss_pred CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhcC
Q 012256 334 PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 365 (467)
Q Consensus 334 g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~~ 365 (467)
... +.+..+..+++.. +++++.++|..++...
T Consensus 85 ~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 85 DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp HHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 222 3445666677765 9999999999988753
No 277
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=20.54 E-value=4.4e+02 Score=24.66 Aligned_cols=73 Identities=15% Similarity=0.018 Sum_probs=47.5
Q ss_pred cCCeEEEE-EecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh-------cCeEEecCCCCCCcHHHHHHHHcCCeEE
Q 012256 258 LAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD-------YKVFLNPSTTDVVCTTTAEALAMGKIVV 329 (467)
Q Consensus 258 ~~~~~l~i-~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~-------adv~v~ps~~e~~~~~~lEAma~G~PVV 329 (467)
.++++++- +- ..+.+..++.+++++... ...+.+.++++.. .|+++..+....-.-.+.+|+..|++|+
T Consensus 37 ~~~~~lva~v~-d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl 113 (398)
T 3dty_A 37 DNTFVLVAGAF-DIDPIRGSAFGEQLGVDS--ERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVV 113 (398)
T ss_dssp GGSEEEEEEEC-CSSHHHHHHHHHHTTCCG--GGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEEEEe-CCCHHHHHHHHHHhCCCc--ceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 35566653 22 344566777777766420 0123445578876 7999887766655566889999999999
Q ss_pred EeCC
Q 012256 330 CANH 333 (467)
Q Consensus 330 ~t~~ 333 (467)
+-+.
T Consensus 114 ~EKP 117 (398)
T 3dty_A 114 CEKP 117 (398)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 8654
No 278
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=20.33 E-value=3.5e+02 Score=22.04 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=59.8
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHH---Hh--cCeEEec-CCCCCCcHHHHHHHH---cCCeEEE
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIF---HD--YKVFLNP-STTDVVCTTTAEALA---MGKIVVC 330 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~---~~--adv~v~p-s~~e~~~~~~lEAma---~G~PVV~ 330 (467)
.+++|+.+.+. ...+....+..+..+... ...++.+ .. .|+++.= ...+.-|+.+++.+. .++|||.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETF---DCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEE---SSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEc---CCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46777776655 344666666656554432 2333222 22 3666543 223445777777764 3677765
Q ss_pred eCC-CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 331 ANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 331 t~~-g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
-.. +.. +.+..+..+++.. +.+++.++|..++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 443 332 3455666677776 999999999988764
No 279
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=20.31 E-value=2.8e+02 Score=25.64 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=27.9
Q ss_pred HHHHHHhcCeEEe--cCCCCC---CcHHHHHHHHcCCeEEEeCCCC
Q 012256 295 ADLIFHDYKVFLN--PSTTDV---VCTTTAEALAMGKIVVCANHPS 335 (467)
Q Consensus 295 ~~~~~~~adv~v~--ps~~e~---~~~~~lEAma~G~PVV~t~~g~ 335 (467)
-+++++.||++++ |...|+ ++-..+..|--|.-+|-+.-|+
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~ 233 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGK 233 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccc
Confidence 3589999999875 433444 4556777777777777666654
No 280
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=20.15 E-value=2.5e+02 Score=20.31 Aligned_cols=104 Identities=7% Similarity=-0.078 Sum_probs=58.6
Q ss_pred eEEEEEecCCC-HHHHHHHHHhcCCeeEEecCCCCHHHHHHh--cCeEEecCC-CCCCcHHHHHHHH--cCCeEEEeCC-
Q 012256 261 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH- 333 (467)
Q Consensus 261 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~v~ps~-~e~~~~~~lEAma--~G~PVV~t~~- 333 (467)
.+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=.. .+.-|..+++.+. ..+|+|....
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 35777776554 344555565555554322221111133333 477765322 2334566666553 4677775443
Q ss_pred CCc----cccccCCCEEeeC--CHHHHHHHHHHHHhc
Q 012256 334 PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 364 (467)
Q Consensus 334 g~~----e~v~~~~~g~~~~--~~~~l~~~i~~~l~~ 364 (467)
+.. +.+..+..+++.. +.+++..++..++..
T Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 332 3456677788776 999999999887653
No 281
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=20.15 E-value=96 Score=28.64 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=51.8
Q ss_pred CceEEEEeccccccCHHHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHhcCCeeEEecCCCCHHHHHHh---cCeE
Q 012256 229 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVF 305 (467)
Q Consensus 229 ~~~il~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~---adv~ 305 (467)
+..+..+|--.- |-...++++.. .++++++-+-+.... ..+ +.. +...++++.. .|++
T Consensus 25 ~~rvgiiG~G~i--g~~~~~~~l~~----~~~~~lvav~d~~~~--------~~g--~~~---~~~~~~ll~~~~~vD~V 85 (330)
T 4ew6_A 25 PINLAIVGVGKI--VRDQHLPSIAK----NANFKLVATASRHGT--------VEG--VNS---YTTIEAMLDAEPSIDAV 85 (330)
T ss_dssp CEEEEEECCSHH--HHHTHHHHHHH----CTTEEEEEEECSSCC--------CTT--SEE---ESSHHHHHHHCTTCCEE
T ss_pred CceEEEEecCHH--HHHHHHHHHHh----CCCeEEEEEEeCChh--------hcC--CCc---cCCHHHHHhCCCCCCEE
Confidence 456777774211 11234555543 467777655554321 122 222 2344578876 7999
Q ss_pred EecCCCCCCcHHHHHHHHcCCeEEEeCC
Q 012256 306 LNPSTTDVVCTTTAEALAMGKIVVCANH 333 (467)
Q Consensus 306 v~ps~~e~~~~~~lEAma~G~PVV~t~~ 333 (467)
+..+....-.-.+..|+..|++|++-+.
T Consensus 86 ~i~tp~~~H~~~~~~al~aGkhVl~EKP 113 (330)
T 4ew6_A 86 SLCMPPQYRYEAAYKALVAGKHVFLEKP 113 (330)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred EEeCCcHHHHHHHHHHHHcCCcEEEeCC
Confidence 8887655555568899999999998775
Done!