Your job contains 1 sequence.
>012257
MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF
NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP
TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES
AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG
EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER
EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI
SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP
RMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYSFLLIDYFNALVLLMI
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012257
(467 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 1519 8.0e-156 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 1479 1.4e-151 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 1468 2.0e-150 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 1195 1.7e-121 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 1130 1.3e-114 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 1130 1.3e-114 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 1128 2.2e-114 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 1128 2.2e-114 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 1128 2.2e-114 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 1128 2.2e-114 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 1128 2.2e-114 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 1127 2.8e-114 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 1127 2.8e-114 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 1126 3.5e-114 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 1125 4.5e-114 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 1125 4.5e-114 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 1125 4.5e-114 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 1125 4.5e-114 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 1124 5.8e-114 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 1123 7.3e-114 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 1117 3.2e-113 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 1117 3.2e-113 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 1114 6.6e-113 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 1107 3.6e-112 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 1099 2.6e-111 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 974 4.3e-111 2
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 1090 2.3e-110 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 1089 2.9e-110 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 1087 4.8e-110 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 1082 1.6e-109 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 1075 9.0e-109 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 1074 1.1e-108 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 1072 1.9e-108 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 1070 3.0e-108 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 1069 3.9e-108 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 1067 6.3e-108 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 1066 8.1e-108 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 1063 1.7e-107 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 1063 1.7e-107 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 1060 3.5e-107 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 1052 2.5e-106 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 1051 3.1e-106 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 1051 3.1e-106 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 744 8.2e-106 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 744 8.2e-106 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 1036 1.2e-104 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 1027 1.1e-103 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 1022 3.7e-103 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 981 8.2e-99 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 979 1.3e-98 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 975 3.5e-98 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 967 2.5e-97 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 706 3.3e-96 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 948 2.6e-95 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 924 9.0e-93 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 907 5.7e-91 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 900 3.1e-90 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 900 3.1e-90 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 898 5.1e-90 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 883 2.0e-88 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 878 6.7e-88 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 872 2.9e-87 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 870 4.7e-87 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 863 2.6e-86 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 859 6.9e-86 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 845 2.1e-84 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 795 5.1e-81 2
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 695 1.1e-70 2
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 682 4.0e-67 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 676 1.7e-66 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 589 2.8e-57 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 587 4.6e-57 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 536 1.2e-51 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 536 1.2e-51 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 536 1.2e-51 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 535 1.5e-51 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 534 1.9e-51 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 481 7.9e-46 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 478 1.6e-45 1
UNIPROTKB|B1ANR1 - symbol:PABPC4 "Polyadenylate-binding p... 425 6.8e-40 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 422 1.4e-39 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 420 2.3e-39 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 389 5.1e-39 2
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 386 9.2e-36 1
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 380 4.0e-35 1
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 368 7.4e-34 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 257 5.4e-33 2
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 254 1.2e-32 2
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 254 1.2e-32 2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 253 1.7e-32 2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 253 1.7e-32 2
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 252 2.2e-32 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 253 3.4e-32 2
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 344 2.6e-31 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 241 2.7e-31 2
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 254 4.2e-31 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 252 8.7e-31 3
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 337 1.4e-30 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 252 2.5e-30 2
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 254 2.7e-30 2
WARNING: Descriptions of 1482 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 1519 (539.8 bits), Expect = 8.0e-156, P = 8.0e-156
Identities = 291/422 (68%), Positives = 352/422 (83%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
T+ A +GG A QF +TSLYVGDLD +V DSQL+D F QMG VV+VRVCRDL TRRSL
Sbjct: 19 TSAPATSGGA-TATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSL 77
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+RDP++R+SGAGNIFIKNLD+SID+
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDH 137
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
KALHDTFS+FGNI+SCKVA DS GQS+GYGFVQ+ NEESA+ AI+KLNGMLLNDKQV+VG
Sbjct: 138 KALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG 197
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
PFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK FGE+G ITS VM+D +GKSK F
Sbjct: 198 PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGF 257
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
GFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK ERE EL+ ++EQ+LKE ADKF+
Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQS 317
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
NLYVKNLD SISD+KLKE+FS FGT+TS KVMRDPNG S+GSGFVAF+T EEA++A+++
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 382 MNGKMVVSKPLYVALAQRKEERRARLQAQFSQXXXXXXXXXXXXXX-----XAPGLGQQL 436
++GKM+ SKPLYVA+AQRKE+RR RLQAQFSQ PG+GQQ+
Sbjct: 378 LSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQM 437
Query: 437 FY 438
FY
Sbjct: 438 FY 439
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
Identities = 284/410 (69%), Positives = 341/410 (83%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q +TSLYVGDLD +V DSQL++ F Q GQVVSVRVCRD++TRRSLGYGYVNY +
Sbjct: 39 AAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQD 98
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A+RAL+ELNF LNG+ IR+MYS RDP++RKSG GNIFIKNLDKSID+KALH+TFS FG
Sbjct: 99 ASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP 158
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D GQS+GYGFVQ+D +E+A+ AIDKLNGMLLNDKQV+VGPF+ K +R+ +
Sbjct: 159 ILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG 218
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+K +F NVYVKNLSE+ ++++L K+FGEFG+ TS +MRD +GKSK FGFVNF++ DDAA
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 278
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+V+ALNGK FDDKEW+VGKAQKK ERE ELK KFEQSLKE ADK +G NLYVKNLD+S+
Sbjct: 279 RAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESV 338
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+DDKL+E F+ FGTITSCKVMRDP+G+SRGSGFVAFST EEA++A+TEMNGKM+V+KPLY
Sbjct: 339 TDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLY 398
Query: 394 VALAQRKEERRARLQAQFSQXXXXXX--XXXXXXXXXAPG---LGQQLFY 438
VALAQRKE+R+ARLQAQFSQ PG +GQQLFY
Sbjct: 399 VALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFY 448
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
Identities = 282/421 (66%), Positives = 335/421 (79%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
T GI GG SLYVGDLD +V DSQLYD F ++ QVVSVRVCRD +T SL
Sbjct: 28 TPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSL 87
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYGYVNY+ +A +A+ +LN++ LNGK IRI YS RD + R+SG GN+F+KNLDKS+DN
Sbjct: 88 GYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDN 147
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
K LH+ FS G I+SCKVATD +GQSRGYGFVQFD E+SAK+AI+KLNG +LNDKQ+FVG
Sbjct: 148 KTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 207
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
PFLRK+ERES ADK +F NVYVKNLSE TT+D+LK FG++G I+S VMRD DGKS+CF
Sbjct: 208 PFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCF 267
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
GFVNF++P+DAAR+VEALNGKKFDDKEWYVGKAQKK ERE+EL ++EQ + +KF+G
Sbjct: 268 GFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDG 327
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
LNLYVKNLDD+++D+KL+ELF+EFGTITSCKVMRDP+G S+GSGFVAFS A EAS+ L E
Sbjct: 328 LNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNE 387
Query: 382 MNGKMVVSKPLYVALAQRKEERRARLQAQFSQXXXXXXXXXX----XXXXXAPGLGQQLF 437
MNGKMV KPLYVALAQRKEERRA+LQAQFSQ APGLGQQ+F
Sbjct: 388 MNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIF 447
Query: 438 Y 438
Y
Sbjct: 448 Y 448
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
Identities = 234/377 (62%), Positives = 290/377 (76%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLY GDLD V ++ L+DLF + VVSVRVCRD RRSLGY Y+N++ ++A RA+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAM 106
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+TPL +PIRIM S RDP+ R SG GNIFIKNLD SIDNKAL +TFS+FG ILSCK
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKT 216
VA D G+S+GYGFVQF+ EESA++AIDKLNGML+NDKQVFVG F+R+QER +
Sbjct: 167 VAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTP 226
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
RF NVYVKNL + ED+L+K FG+FG+I+S VMRD G S+CFGFVNF+ + AA +V
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAV 286
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +NG D YVG+AQKK ERE EL+ KFEQ +K +G NLY+KNLDDS+ D+
Sbjct: 287 EKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE+FSE+G +TS KVM +P G+SRG GFVA+S EEA +AL+EMNGKM+ KPLY+AL
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+RRA LQA FSQ
Sbjct: 407 AQRKEDRRAHLQALFSQ 423
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 220/382 (57%), Positives = 288/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 442 (160.7 bits), Expect = 1.2e-41, P = 1.2e-41
Identities = 102/296 (34%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LKELF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 406 (148.0 bits), Expect = 1.8e-37, P = 1.8e-37
Identities = 97/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L + F FG
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 220/382 (57%), Positives = 288/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 442 (160.7 bits), Expect = 1.2e-41, P = 1.2e-41
Identities = 102/296 (34%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LKELF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 406 (148.0 bits), Expect = 1.8e-37, P = 1.8e-37
Identities = 97/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L + F FG
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 439 (159.6 bits), Expect = 2.7e-41, P = 2.7e-41
Identities = 101/296 (34%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 410 (149.4 bits), Expect = 6.3e-38, P = 6.3e-38
Identities = 98/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L D F FG
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 439 (159.6 bits), Expect = 2.7e-41, P = 2.7e-41
Identities = 101/296 (34%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 410 (149.4 bits), Expect = 6.3e-38, P = 6.3e-38
Identities = 98/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L D F FG
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 439 (159.6 bits), Expect = 2.7e-41, P = 2.7e-41
Identities = 101/296 (34%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 410 (149.4 bits), Expect = 6.3e-38, P = 6.3e-38
Identities = 98/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L D F FG
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 439 (159.6 bits), Expect = 2.7e-41, P = 2.7e-41
Identities = 101/296 (34%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 410 (149.4 bits), Expect = 6.3e-38, P = 6.3e-38
Identities = 98/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L D F FG
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 439 (159.6 bits), Expect = 3.4e-41, P = 3.4e-41
Identities = 101/296 (34%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 410 (149.4 bits), Expect = 7.2e-38, P = 7.2e-38
Identities = 98/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L D F FG
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
Identities = 219/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
Identities = 219/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 220/382 (57%), Positives = 286/382 (74%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 220/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 219/382 (57%), Positives = 286/382 (74%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 435 (158.2 bits), Expect = 8.2e-41, P = 8.2e-41
Identities = 101/296 (34%), Positives = 166/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 410 (149.4 bits), Expect = 6.3e-38, P = 6.3e-38
Identities = 98/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L D F FG
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
Identities = 220/382 (57%), Positives = 286/382 (74%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +D LK IF ++G S VM D +GKS+ FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+V+ +NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM D G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 101/296 (34%), Positives = 169/296 (57%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ + V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + DDKLK++FS++G S +VM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
NG SRG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQ 282
Score = 408 (148.7 bits), Expect = 1.0e-37, P = 1.0e-37
Identities = 97/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D+ L D FS +GN
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
+S +V TD G+SRG+GFV F+ E A+ A+D++NG +N K ++VG +K ER++
Sbjct: 218 MSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM D G+SK FG
Sbjct: 278 RKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
Identities = 209/374 (55%), Positives = 285/374 (76%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LFN +G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
DELN+T + G+P RIM+S RDP++RK G GN+FIKNLD +IDNKALHDTFS FG ILSCK
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D LG ++GYGFV FD+ ESA +AI+ +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 199 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KNL TE + +FG+FG ITS ++++D + K + FGFVN+ + + A ++V
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K++ K+ YVG+AQKK+ERE EL+ ++EQ E +K++G+NL++KNL D + D+
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+LK FS FGTITS K+M D G S+G GFV ++T EEA+KA+TEMN +M+ KPLYVAL
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 397 AQRKEERRARLQAQ 410
AQRKE RR++L+AQ
Sbjct: 439 AQRKEVRRSQLEAQ 452
Score = 406 (148.0 bits), Expect = 2.1e-37, P = 2.1e-37
Identities = 96/288 (33%), Positives = 155/288 (53%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + F++ G + S +V D++ + S GY +V F N E + A+
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D+LN L+ + + +R+ + K NV++KNL L F FG I
Sbjct: 139 DELNYTLIKGRPCRI----MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKI 194
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V D G +K +GFV+FD + A ++E +NG +DK+ YVG + ER+ ++
Sbjct: 195 LSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKV- 253
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
++LK F N+Y+KNLD I++ + +LF +FG ITS +++D N RG G
Sbjct: 254 ----EALKAN---FT--NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFG 304
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
FV ++ E A KA+ E+N K K LYV AQ+K ER L+ ++ Q
Sbjct: 305 FVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ 352
Score = 310 (114.2 bits), Expect = 7.2e-27, P = 7.2e-27
Identities = 70/198 (35%), Positives = 105/198 (53%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+ N++IKNLD I + D F FG I S + D + RG+GFV + N E A+
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-------RFN-----NVYVKNLSETTT 231
A+D+LN K+++VG +K ERE K + N N+++KNL +
Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVD 376
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ LK F FG ITS +M D GKSK FGFV + P++A ++V +N + K YV
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Query: 292 GKAQKKYEREMELKGKFE 309
AQ+K R +L+ + +
Sbjct: 437 ALAQRKEVRRSQLEAQIQ 454
Score = 262 (97.3 bits), Expect = 7.5e-20, P = 7.5e-20
Identities = 69/245 (28%), Positives = 124/245 (50%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD ++++ L+D F+ G+++S +V D + GYG+V++++ A
Sbjct: 163 RKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESA 221
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A++ +N LN K + + + S R+ + K+ N++IKNLD I + D F
Sbjct: 222 NAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLF 281
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I S + D + RG+GFV + N E A+ A+D+LN K+++VG +K E
Sbjct: 282 GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHE 341
Query: 209 RESTADKT-------RFNNVYVKNLSETTTEDDL--KKIFGEFGII-TSTAVMRDADGKS 258
RE K + N NL +D++ +++ EF T T+ D +
Sbjct: 342 REEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQG 401
Query: 259 KCFGF 263
K GF
Sbjct: 402 KSKGF 406
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
Identities = 218/382 (57%), Positives = 287/382 (75%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK+IF ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L +Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTSQYMQ 384
Score = 426 (155.0 bits), Expect = 8.9e-40, P = 8.9e-40
Identities = 97/296 (32%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ + V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE E+ + A +F N+Y+KN + + D+KLKE+F ++G S +VM D
Sbjct: 177 KEREAEMGAR--------AKEFT--NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQ 282
Score = 401 (146.2 bits), Expect = 6.4e-37, P = 6.4e-37
Identities = 95/290 (32%), Positives = 160/290 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L + F +G
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS +V TD G+S+G+GFV F+ E A+ A+D++NG +N KQV+VG +K ER++
Sbjct: 218 LSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQRM 386
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
Identities = 216/382 (56%), Positives = 286/382 (74%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++FG++G S VM D +GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ F FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 438 (159.2 bits), Expect = 3.3e-41, P = 3.3e-41
Identities = 99/296 (33%), Positives = 169/296 (57%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ + V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R+++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN D ++D++LKE+F ++G S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
NG S+G GFV+F E+A KA+ EMNGK + K ++V AQ+K ER+ L+ +F Q
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 382 (139.5 bits), Expect = 8.4e-35, P = 8.4e-35
Identities = 94/290 (32%), Positives = 157/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN ++++ L + F +G
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG +N K +FVG +K ER++
Sbjct: 218 LSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
Identities = 216/382 (56%), Positives = 285/382 (74%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK+ FG++G S VM D GKS+ FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ F+ FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 427 (155.4 bits), Expect = 6.7e-40, P = 6.7e-40
Identities = 98/296 (33%), Positives = 166/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R+++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LKE F ++G S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G SRG GFV+F E+A KA+ +MNGK + K ++V AQ+K ER+ L+ +F Q
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQ 282
Score = 393 (143.4 bits), Expect = 5.0e-36, P = 5.0e-36
Identities = 97/290 (33%), Positives = 157/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L + F +G
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+SRG+GFV F+ E A+ A+D +NG LN K +FVG +K ER++
Sbjct: 218 LSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 215/375 (57%), Positives = 283/375 (75%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+ +DA ++VE
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 MNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAHLTNQYMQ 384
Score = 400 (145.9 bits), Expect = 7.9e-37, P = 7.9e-37
Identities = 97/291 (33%), Positives = 158/291 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + + + +AA A ++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN +D++ L + FS +G
Sbjct: 160 GMLLN--DRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 218 LSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAEL- 276
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK F
Sbjct: 277 KRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGF 335
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 266 (98.7 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 65/210 (30%), Positives = 117/210 (55%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF++ G+ +SV+V D T +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHED 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N +NGK + R + I + N++IKNLD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 363 LYVALAQRKEER-----KAHLTNQYMQRIA 387
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 974 (347.9 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
Identities = 179/321 (55%), Positives = 248/321 (77%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S D K
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKA 239
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN++ T+D+ + +F ++G +TS+++ RD + GKS+ FGFVNF +DA+++
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+F + YVG+AQKK+ERE EL+ +E + +E A K++G+NLY+KNLDD + D
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 336 DKLKELFSEFGTITSCKVMRD 356
+KL++LFSEFG ITS KVMRD
Sbjct: 360 EKLRQLFSEFGPITSAKVMRD 380
Score = 395 (144.1 bits), Expect = 6.9e-36, P = 6.9e-36
Identities = 91/287 (31%), Positives = 158/287 (55%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D +G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 231
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGS 364
KF++ K N+YVKN++ ++DD+ + LF ++G +TS + RD G SRG
Sbjct: 232 SKFDEM------KANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGF 285
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
GFV F++ E+ASKA+ E+N K + LYV AQ+K ER L+ +
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Score = 230 (86.0 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 61/197 (30%), Positives = 109/197 (55%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV L + TE L ++F + G + S V RDA +S + +VN++ D +++E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + +L++T +G N+++KNLD +I + L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDVAIDNKAL 165
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ F+ FG I SCKV +D NG S+G GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 399 RKEERRAR---LQAQFS 412
K++R+++ ++A F+
Sbjct: 226 PKKDRQSKFDEMKANFT 242
Score = 217 (81.4 bits), Expect = 6.1e-25, Sum P(2) = 6.1e-25
Identities = 58/201 (28%), Positives = 103/201 (51%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAK 182
K+ NI++KN++ + + F +G++ S +A D G+SRG+GFV F + E A
Sbjct: 238 KANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDAS 297
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQEREST------------ADKTRFNNVYVKNLSETT 230
A+ +LN + + ++VG +K ERE A K + N+Y+KNL +
Sbjct: 298 KAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEV 357
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
++ L+++F EFG ITS VMRD+ + G + +++ ++ E K ++KE
Sbjct: 358 DDEKLRQLFSEFGPITSAKVMRDSITEPGEEG--ESKEGEESEKNKE----NKPEEKEGD 411
Query: 291 VGKAQKKYEREMELKGKFEQS 311
K ++K + + K K +S
Sbjct: 412 DSKPEEKEGEDSKSKSKLGKS 432
Score = 143 (55.4 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G S+G GFV F+ ++A+KA+ EMN +MV +KPLYVALAQRK+ R+ +L+
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE 479
Score = 112 (44.5 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
GKSK FGFV F +PDDA ++V +N + ++K YV AQ+K R K + EQS++
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 96 (38.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
LG+S+G+GFV F N + A A+ ++N ++N+K ++V RK R++ +++
Sbjct: 429 LGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQS 481
Score = 81 (33.6 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
A ++ +LY+ +LD V+D +L LF++ G + S +V RD T
Sbjct: 340 ASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
Identities = 219/389 (56%), Positives = 282/389 (72%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N+GG + SLYVGDL V ++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+
Sbjct: 2 NSGGPA----YPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYI 57
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
N+ +A ALD +N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+D
Sbjct: 58 NFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYD 117
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
TFS FGNILSCKV D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 207 QEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
+ERE+ A F NVY+KN E + LK IF EFG S VM D G+S+ FGFV
Sbjct: 177 KEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
NF + DA R+V +NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NL
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNL 296
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
YVKNLDDSI D+KL++ F+ +GTITS KVM D G SRG GFV FS+ EEA+KA+TEMNG
Sbjct: 297 YVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 385 KMVVSKPLYVALAQRKEERRARLQAQFSQ 413
++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYIQ 384
Score = 368 (134.6 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 92/290 (31%), Positives = 155/290 (53%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ ++D S+++ LYD F+ G ++S +V D + + G+ + AA+ A ++
Sbjct: 100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + ID++ L + F+ FG
Sbjct: 160 GMLLN--DRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS V TD G+SRG+GFV F N A+ A+ ++NG LN + ++VG ++ ER+
Sbjct: 218 LSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ R+ N+YVKNL ++ ++ L+K F +G ITS VM D G S+ FG
Sbjct: 278 RKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG-GHSRGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRL 386
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
Identities = 213/382 (55%), Positives = 283/382 (74%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 6 AGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 65
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 66 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 125
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 126 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 184
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + + LK++F ++G S VM D GKS+ FGFV+++ +D
Sbjct: 185 GAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHED 244
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG + + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 245 ANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 304
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 305 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 363
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 364 LYVALAQRKEERKAHLTNQYMQ 385
Score = 396 (144.5 bits), Expect = 2.4e-36, P = 2.4e-36
Identities = 94/290 (32%), Positives = 158/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + + + +AA A ++
Sbjct: 101 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMN 160
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN +D++ L + F +G
Sbjct: 161 GMLLN--DRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKT 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+SRG+GFV ++ E A A++++NG LN K VFVG +K ER++
Sbjct: 219 LSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 278
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK FG
Sbjct: 279 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFG 337
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 338 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 387
Score = 226 (84.6 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 69/201 (34%), Positives = 108/201 (53%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDP 269
+TA ++YV +L TE L + F G + S V RD +S + +VNF P
Sbjct: 4 ATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 63
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
DA R+++ +N FD V K K R M + + SL+++ G N+++KNL
Sbjct: 64 ADAERALDTMN---FD-----VVKG--KPIRIMW--SQRDPSLRKSG---VG-NVFIKNL 107
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D SI + L + FS FG I SCKV+ D NG S+G FV F T + A +A+ +MNG ++
Sbjct: 108 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 166
Query: 390 KPLYVALAQRKEERRARLQAQ 410
+ ++V + ++ER A + A+
Sbjct: 167 RKVFVGRFKSRKEREAEMGAK 187
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 214/375 (57%), Positives = 280/375 (74%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAILTNQYMQ 384
Score = 375 (137.1 bits), Expect = 4.2e-34, P = 4.2e-34
Identities = 94/291 (32%), Positives = 155/291 (53%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +L+ S+++ LYD F+ G ++S +V D R G+ + + AA +A ++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA NI++KNL +D + L D FS FG +
Sbjct: 160 GMLLN--DRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D+ G SR +GFV F+ E A+ A+ +NG ++ + ++ G ++ ER++
Sbjct: 218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL- 276
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+YVKNL ++ +D L+K F +G+ITS VM + G SK F
Sbjct: 277 KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGF 335
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 269 (99.8 bits), Expect = 9.8e-21, P = 9.8e-21
Identities = 70/214 (32%), Positives = 115/214 (53%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+ +N ++G+ + R + +R+ N+++KNLD
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 304 SIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
++V RK+ER K N Y++ LS T
Sbjct: 363 LYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 207/374 (55%), Positives = 283/374 (75%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD +++SLGY YVNY+ + +A+
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+ P+ G+P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTFS FG ILSCK
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD GQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ +E+ +K+F FG ITS + +D DGKSK FGFVNF+D + A ++V
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAV 290
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K+ + ++ YVG+AQKK ER ELK ++E E K++G+NL+VKNLDD+I +
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSE 350
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F FGTITS KVM D G S+G GFV F+T EEA+KA+TEMN +M+ KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 410
Query: 397 AQRKEERRARLQAQ 410
AQRK+ RR++L+ Q
Sbjct: 411 AQRKDVRRSQLEQQ 424
Score = 409 (149.0 bits), Expect = 7.5e-38, P = 7.5e-38
Identities = 95/286 (33%), Positives = 157/286 (54%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ L+ S++ L + FS G + S +V D++ + S GY +V + E + AI
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN + + + +R+ +A ++ N+++KNL L F FG I
Sbjct: 111 EELNYNPIEGRPCRI----MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKI 166
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V D G+SKCFGFV+++ + A ++E +NG +D+E +VGK K +RE
Sbjct: 167 LSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRE---- 222
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D + S++ ++LFS FG ITS + +D +G S+G G
Sbjct: 223 SKFEEM------KANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFG 276
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
FV F E A KA+ E+N K + + +YV AQ+K ER L+ Q+
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
Score = 310 (114.2 bits), Expect = 6.5e-27, P = 6.5e-27
Identities = 70/198 (35%), Positives = 112/198 (56%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+ NI++KN+D + ++ FS FG I S + D G+S+G+GFV F++ ESA
Sbjct: 229 KANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVK 288
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADK----TRFN--------NVYVKNLSETTT 231
A+++LN +N ++++VG +K+ER K R N++VKNL +T
Sbjct: 289 AVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTID 348
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+ L++ F FG ITS VM D GKSK FGFV F P++A +++ +N + + K YV
Sbjct: 349 SEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Query: 292 GKAQKKYEREMELKGKFE 309
AQ+K R +L+ + +
Sbjct: 409 ALAQRKDVRRSQLEQQIQ 426
Score = 246 (91.7 bits), Expect = 4.9e-18, P = 4.9e-18
Identities = 57/201 (28%), Positives = 114/201 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ ++++ +L ++++ L+D F+ G+++S +V D +S +G+V+Y A
Sbjct: 134 ARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEA 192
Query: 94 ATRALDELNFTPLNGKPIRI--MYSYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDT 147
A A++ +N LN + + + S +D + K+ NI++KN+D + ++
Sbjct: 193 AEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKL 252
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FG I S + D G+S+G+GFV F++ ESA A+++LN +N ++++VG +K+
Sbjct: 253 FSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKR 312
Query: 208 ERESTADKTRFNNVYVKNLSE 228
ER K ++ V ++ L++
Sbjct: 313 ERLEELKK-QYEAVRLEKLAK 332
Score = 212 (79.7 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 58/204 (28%), Positives = 104/204 (50%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFV 264
+++ ES+ ++YV L+ + E L +IF G ++S V RDA KS + +V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
N+ +D +++E LN + + + +Q+ + S + + D G N+
Sbjct: 99 NYHKYEDGEKAIEELNYNPIEGRPCRIMWSQR------------DPSARRSGD---G-NI 142
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
++KNL +I + L + FS FG I SCKV D G S+ GFV + TAE A A+ +NG
Sbjct: 143 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
Query: 385 KMVVSKPLYVALAQRKEERRARLQ 408
++ + ++V K++R ++ +
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFE 226
Score = 129 (50.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 27/90 (30%), Positives = 52/90 (57%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD +++ +L + F G + S +V D +S G+G+V + EAT
Sbjct: 332 KYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEAT 390
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
+A+ E+N +NGKP+ + + R +R+S
Sbjct: 391 KAITEMNTRMINGKPLYVALAQRKD-VRRS 419
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
Identities = 211/375 (56%), Positives = 278/375 (74%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAILTNQYMQ 384
Score = 394 (143.8 bits), Expect = 3.7e-36, P = 3.7e-36
Identities = 97/290 (33%), Positives = 156/290 (53%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D R G+ + AA+ A + ++
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D+K L + FS FGN
Sbjct: 160 GMLLN--DRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+SRG+GFV + N E A+ A+ ++NG +N + ++VG ++ ER+
Sbjct: 218 LSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELK 277
Query: 215 KT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ R N N+YVKNL + +D L+K F +G ITS VM + G SK FG
Sbjct: 278 RKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 266 (98.7 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 67/204 (32%), Positives = 109/204 (53%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D +L ++F+ G +SV+V D T RS G+G+VNY EA +A+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 100 ELNFTPLNGKPI-------RI---------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N +NG+ I RI + I + N+++KNLD ID+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +++ K ++V
Sbjct: 310 LRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 204 LRKQERESTADKTRFNNVYVKNLS 227
RK+ER K N Y++ L+
Sbjct: 369 QRKEER-----KAILTNQYMQRLA 387
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 208/388 (53%), Positives = 291/388 (75%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
A G + + S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY Y
Sbjct: 24 AATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAY 83
Query: 86 VNYNAAHEATR-ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKAL 144
VN+N HEA R A+++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL
Sbjct: 84 VNFND-HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKAL 142
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+DTFS FG+ILS K+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L
Sbjct: 143 YDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHL 202
Query: 205 RKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
++ER+S ++T+ + N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FG
Sbjct: 203 SRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFG 262
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FVN++ +DA ++VEALN + + ++ YVG+AQKK ER LK ++E E K++G+
Sbjct: 263 FVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGV 322
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NL+VKNLDDS+ D+KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE
Sbjct: 323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQ 410
N ++V KPLYVA+AQRK+ RR++L Q
Sbjct: 383 NQQIVAGKPLYVAIAQRKDVRRSQLAQQ 410
Score = 391 (142.7 bits), Expect = 3.8e-36, P = 3.8e-36
Identities = 91/289 (31%), Positives = 160/289 (55%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAK 182
++ + ++++ +L+ S+ L+D FS G++ S +V D++ + S GY +V F++ E+ +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI++LN + + + +R+ + K N+++KNL L F F
Sbjct: 94 KAIEQLNYTPIKGRLCRI----MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVF 149
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G I S+ + D +GKSK FGFV+F++ A +++ALNG + +E YV + ER+
Sbjct: 150 GDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
+L+ ET K NLYVKN++ +D++ +ELF++FG I S + +D +G +
Sbjct: 210 QLE--------ET--KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLK 259
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
G GFV + E+A KA+ +N + + LYV AQ+K ER L+ Q+
Sbjct: 260 GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Score = 126 (49.4 bits), Expect = 0.00010, P = 0.00010
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F G + S +V R +S G+G+V ++ EAT
Sbjct: 318 KYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEAT 376
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 415
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 210/380 (55%), Positives = 279/380 (73%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A
Sbjct: 7 EYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAE 66
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FG+IL
Sbjct: 67 RALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDIL 126
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A
Sbjct: 127 SCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGA 185
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E + LK+IF FG S VM D G+S+ FGFVN+ + ++A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQ 245
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V +NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I
Sbjct: 246 KAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGI 305
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DD+L++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 306 DDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 394 VALAQRKEERRARLQAQFSQ 413
VALAQRKEER+A L Q+ Q
Sbjct: 365 VALAQRKEERKAILTNQYMQ 384
Score = 396 (144.5 bits), Expect = 2.2e-36, P = 2.2e-36
Identities = 99/290 (34%), Positives = 158/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D R G+ + AA+ A + ++
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D+K L + FS FGN
Sbjct: 160 GMLLN--DRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D+ G+SRG+GFV + N E A+ A+ ++NG +N + V+VG ++ ER+
Sbjct: 218 LSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELK 277
Query: 215 KT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ R N N+YVKNL + +D L+K F +G ITST VM + G SK FG
Sbjct: 278 RKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GHSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 209/375 (55%), Positives = 281/375 (74%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+G+GFV F+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ +T+ F
Sbjct: 132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + + L +FG FG + S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG AQKK +R +ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA++EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERQAHLTNQYIQ 384
Score = 398 (145.2 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 96/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +L+ ++++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + G N++IKN +D+K L+ F FG +
Sbjct: 160 GMLLN--DRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQV 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER----- 209
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN K ++VGP +K +R
Sbjct: 218 LSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELK 277
Query: 210 ----ESTADK-TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ T D+ R+ N+YVKNL + ++ L+K F FG ITST VM + G+SK FG
Sbjct: 278 RKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRM 386
Score = 269 (99.8 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 69/205 (33%), Positives = 113/205 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQV+SV+V D +S G+G+V++ +A +A+D
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 100 ELNFTPLNGK-----P--------IRIMYSYRDPT----IRKSGAGNIFIKNLDKSIDNK 142
E+N LNGK P I + + T IR G N+++KNLD ID++
Sbjct: 250 EMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGI-NLYVKNLDDGIDDE 308
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV T+ G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 309 RLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 367
Query: 203 FLRKQERESTADKTRFNNVYVKNLS 227
RK+ER++ N Y++ ++
Sbjct: 368 AQRKEERQA-----HLTNQYIQRMA 387
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 208/375 (55%), Positives = 278/375 (74%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ +E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L++IF FG S VM D G+SK FGFVNF+ ++A ++V
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAILTNQYMQ 384
Score = 372 (136.0 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 94/290 (32%), Positives = 154/290 (53%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + R G+ + AA A + ++
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN +D+ L + FS FG
Sbjct: 160 GMLLN--DRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+S+G+GFV F+ E A+ A+ +NG +N + V+VG ++ ER+S
Sbjct: 218 LSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+YVKNL + ++ L+K F +G ITS VM + G SK FG
Sbjct: 278 RKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG-GHSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 264 (98.0 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 64/210 (30%), Positives = 114/210 (54%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++Y+ + ++D++L ++F++ G+ +SV+V D T RS G+G+VN+ E
Sbjct: 185 ARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+ ++N +NG+ + R + + + N+++KNLD
Sbjct: 244 AQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +++ K
Sbjct: 304 GIDDERLRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ L+
Sbjct: 363 LYVALAQRKEER-----KAILTNQYMQRLA 387
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 207/374 (55%), Positives = 287/374 (76%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +R+SG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG S VMRD++G+S+ FGF+NF+ ++A ++V+
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+DD+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQF 411
QRKEER+A L Q+
Sbjct: 369 QRKEERKAILTNQY 382
Score = 403 (146.9 bits), Expect = 2.6e-37, P = 2.6e-37
Identities = 95/286 (33%), Positives = 157/286 (54%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS +V D + +S GY ++ F A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ + + + R+ ++ N+++KNL + L F FG I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ V+ + G S+ FGFV+F+ + A +++ +NG +D++ +VG + + +RE EL +
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+L T N+YVKNL + + L++LFS+FG S KVMRD NG SRG GF+
Sbjct: 187 ---ALGFT-------NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFI 236
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
F EEA KA+ MNGK V + LYV AQ++ ER+ L+ +F Q
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQ 282
Score = 390 (142.3 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 95/293 (32%), Positives = 160/293 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +L+ S+++ LYD F+ G ++S +V + R G+ + + AA +A ++
Sbjct: 100 NIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMN 159
Query: 100 E--LNFTPLNGKPIRIMYSYRDPTI--RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
LN + + R+ + R G NI++KNL +D + L D FS FG
Sbjct: 160 GMLLNDRKVFVGHFKSRQK-REAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQ 218
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV DS GQSRG+GF+ F+ E A+ A+D +NG ++ + ++VG ++ ER++ K
Sbjct: 219 SVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNEL-K 277
Query: 216 TRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
RF N+YVKNL ++ +D LK++F +G+ITS VM ++ SK FG
Sbjct: 278 RRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS-HSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ + L +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRS 389
Score = 270 (100.1 bits), Expect = 7.3e-21, P = 7.3e-21
Identities = 71/213 (33%), Positives = 116/213 (54%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + +++ L DLF+Q G+ SV+V RD S +S G+G++N+ E
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDDRLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
++V RK+ER K N Y + LS +
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYRRRLSRS 389
Score = 139 (54.0 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 32/104 (30%), Positives = 61/104 (58%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S+ND +L ++F+ G + S +V + S S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
+A+ E+N + KP+ + + R RK+ N + + L +S+
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEE-RKAILTNQYRRRLSRSV 390
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 211/375 (56%), Positives = 279/375 (74%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG I S VMRD G S+ FGFVNF+ +DA ++V
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAILTNQYIQ 384
Score = 389 (142.0 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 96/290 (33%), Positives = 157/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +L+ S+++ LYD F+ G ++S +V D R G+ + + AA A R ++
Sbjct: 100 NVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA NI++KNL +D + L D FS FG I
Sbjct: 160 GMLLN--DRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKI 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G SRG+GFV F+ E A+ A+ +NG ++ + ++VG ++ ER++
Sbjct: 218 LSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL ++ ++ L+K F +G+ITS VM + G SK FG
Sbjct: 278 RRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG-GHSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQRL 386
Score = 277 (102.6 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 70/211 (33%), Positives = 116/211 (54%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD + S G+G+VN+ +
Sbjct: 185 ARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHED 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+ ++N ++G+ + R +D R G N+++KNLD
Sbjct: 244 AQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SID++ L F+ +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSIDDEKLRKEFAPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ LS
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYIQRLS 387
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 210/375 (56%), Positives = 278/375 (74%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG++ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAILTNQYMQ 384
Score = 381 (139.2 bits), Expect = 9.5e-35, P = 9.5e-35
Identities = 92/289 (31%), Positives = 154/289 (53%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +L+ S+++ LYD F+ G ++S +V D R G+ + + AA A ++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG----NIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ + S R+ + NI++KNL +D + L D FS FG +L
Sbjct: 160 GMLLNDRKVF-VGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKML 218
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV D G SRG+GFV F+ E A+ A+ +NG ++ + ++VG ++ ER++ +
Sbjct: 219 SVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKR 278
Query: 216 ----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
TR+ N+YVKNL ++ ++ L+K F +G+ITS VM + G SK FGF
Sbjct: 279 RFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGF 337
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
V F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 279 (103.3 bits), Expect = 6.2e-22, P = 6.2e-22
Identities = 72/211 (34%), Positives = 116/211 (54%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ +L DLF+Q G+++SV+V RD + S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+ +N ++G+ + R +D R G N+++KNLD
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ LS
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYMQRLS 387
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 208/375 (55%), Positives = 275/375 (73%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAILTNQYMQ 384
Score = 396 (144.5 bits), Expect = 2.2e-36, P = 2.2e-36
Identities = 98/290 (33%), Positives = 158/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D R G+ + + AA+ A + ++
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D+K L + FS FGN
Sbjct: 160 GMLLN--DRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+SRG+GFV + N E A+ A+ ++NG +N + ++VG ++ ER+S
Sbjct: 218 LSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELK 277
Query: 215 KT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ R N N+YVKNL + +D L+K F +G ITS VM + G SK FG
Sbjct: 278 RKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 256 (95.2 bits), Expect = 3.4e-19, P = 3.4e-19
Identities = 65/204 (31%), Positives = 108/204 (52%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D +L ++F+ G +SV+V D + RS G+G+VNY EA +A+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 100 ELNFTPLNGKPI-------RI---------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N +NG+ I RI + I + N+++KNLD ID+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L F +G I S KV T+ G S+G+GFV F + E A A+ ++NG +++ K ++V
Sbjct: 310 LRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 204 LRKQERESTADKTRFNNVYVKNLS 227
RK+ER K N Y++ L+
Sbjct: 369 QRKEER-----KAILTNQYMQRLA 387
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 211/379 (55%), Positives = 276/379 (72%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A R
Sbjct: 8 FPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILS
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE A
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F N+YVKNL E L+ +F FG + S VMRD G S+ FGFVNF ++A +
Sbjct: 187 AMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI
Sbjct: 247 AVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+KL++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+++ +KPLYV
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L Q+ Q
Sbjct: 366 ALAQRKEERKAILTNQYMQ 384
Score = 384 (140.2 bits), Expect = 5.5e-35, P = 5.5e-35
Identities = 93/289 (32%), Positives = 154/289 (53%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +L+ S+++ LYD F+ G ++S +V D R G+ + + AA +A ++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG----NIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ + S R+ + NI++KNL +D + L D FS FG +L
Sbjct: 160 GMLLNDRKVF-VGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKML 218
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV D G SRG+GFV F E A+ A+ +NG ++ + ++VG ++ ER+S +
Sbjct: 219 SVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKR 278
Query: 216 ----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
TR+ N+YVKNL ++ ++ L+K F +G+ITS VM + G SK FGF
Sbjct: 279 RFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGF 337
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
V F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 338 VCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 276 (102.2 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 72/211 (34%), Positives = 116/211 (54%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF++ G+++SV+V RD + S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+ ++N ++G+ + R +D R G N+++KNLD
Sbjct: 244 AQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +L K
Sbjct: 303 DSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRILGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ LS
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYMQRLS 387
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 208/377 (55%), Positives = 273/377 (72%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+S+SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVNY +A RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN TP+ GK RIM+S RDP++RKSG GN+FIKNLDK ID+KAL+DTFS FGNILSC
Sbjct: 68 LDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD S+G+GFV ++ +ESA AI K+NGM++N ++VFVGPF +ER + +
Sbjct: 128 KVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE-VK 186
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NV+ KNLSE D LK++ ++G IT+ +M D GKSK FGF NF+ + A VE
Sbjct: 187 FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVE 246
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
NGK F K Y G+AQKK ERE ELK FE K++G+NLY+KN+DDSI +DK
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDDSIDNDK 299
Query: 338 LKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E+FS+FGTITS VM+D S+G GFV ++ +EA++A+TEMNG+M+ +KPLYVAL
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 397 AQRKEERRARLQAQFSQ 413
AQRK+ RRA+L+ Q Q
Sbjct: 360 AQRKDIRRAQLEMQHQQ 376
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 89/284 (31%), Positives = 155/284 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++ LYD F+ G ++S +V D S G+G+V+Y A +A+ +
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAK 157
Query: 101 LNFTPLNGK-----PIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+N +NG+ P + PT K N+F KNL + + L + +G I
Sbjct: 158 VNGMMINGQKVFVGPFKSSKERGQPTEVKFT--NVFFKNLSEDVGPDQLKELLQQYGEIT 215
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD- 214
+ + D G+S+G+GF F++ E+AK+ ++ NG + + K ++ G +K ERE+
Sbjct: 216 NITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKH 275
Query: 215 --KTRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDP 269
+T++ N+Y+KN+ ++ D L+++F +FG ITS VM+D SK FGFV + P
Sbjct: 276 TFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAP 335
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
D+A R+V +NG+ K YV AQ+K R +L+ + +Q K
Sbjct: 336 DEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFK 379
Score = 218 (81.8 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 56/190 (29%), Positives = 94/190 (49%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G + T+++ +L V QL +L Q G++ ++ + D +S G+G+ N+ +A
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESA 238
Query: 92 HEATRALDELNFTPLNGKPI---RIMYSY-RDPTIR-----KSGAGNIFIKNLDKSIDNK 142
A ++ N +GKPI R R+ ++ K N++IKN+D SIDN
Sbjct: 239 EAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDND 298
Query: 143 ALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
L + FS FG I S V D S+G+GFV + + A A+ ++NG ++ K ++V
Sbjct: 299 KLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVA 358
Query: 202 PFLRKQERES 211
RK R +
Sbjct: 359 LAQRKDIRRA 368
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 206/379 (54%), Positives = 275/379 (72%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 414 (150.8 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 97/296 (32%), Positives = 164/296 (55%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 412 (150.1 bits), Expect = 3.5e-38, P = 3.5e-38
Identities = 99/290 (34%), Positives = 158/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
+++V +LD S+N+ LYD + G ++S V D + + G+ + + AA A + ++
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMN 159
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ K + R + GA N++IKN + +D++ L D F FG
Sbjct: 160 GMLLN--GRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 212/381 (55%), Positives = 276/381 (72%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNILS
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +T
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 217 --RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A
Sbjct: 209 AKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAET 267
Query: 275 SVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+V+AL+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD++
Sbjct: 268 AVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDET 327
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ DD LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKPL
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 387
Query: 393 YVALAQRKEERRARLQAQFSQ 413
YVA+AQRKE+RRA+L +Q+ Q
Sbjct: 388 YVAIAQRKEDRRAQLASQYMQ 408
Score = 311 (114.5 bits), Expect = 5.5e-27, P = 5.5e-27
Identities = 74/198 (37%), Positives = 110/198 (55%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KN + + L F+ FGNI SC+V T G+S+G+GFV F N E A++A+ L
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQAL 272
Query: 189 NGMLLN--DKQVFVGPFLRKQERESTADKT----------RFN--NVYVKNLSETTTEDD 234
+ + D ++ V +K ER + K ++ N+YVKNL ET +D
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 235 LKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
LKK F +G ITS VM D +G+SK FGFV F+ P++A +V +N K K YV A
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Query: 295 QKKYEREMELKGKFEQSL 312
Q+K +R +L ++ Q L
Sbjct: 393 QRKEDRRAQLASQYMQRL 410
Score = 216 (81.1 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 61/200 (30%), Positives = 95/200 (47%)
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFD 267
+ T ++YV +L E L + F G + S V RD A S + +VNF
Sbjct: 22 QNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQ 81
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
P DA R+++ +N + K + +Q+ + M G G N+++K
Sbjct: 82 QPADAERAMDTMNFEALHGKPMRIMWSQR--DPAMRRSGA-------------G-NIFIK 125
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLD I + + + FS FG I SCKV D +G S+G GFV F T E A A+ ++NG ++
Sbjct: 126 NLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLL 185
Query: 388 VSKPLYVALAQRKEERRARL 407
K ++V Q + +R L
Sbjct: 186 AGKKVFVGKFQPRAQRNREL 205
Score = 119 (46.9 bits), Expect = 0.00068, P = 0.00068
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD +V+D L F G + S +V D RS G+G+V + EA
Sbjct: 312 QKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEA 370
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T A+ E+N + KP+ + + R
Sbjct: 371 TSAVTEMNSKMVCSKPLYVAIAQR 394
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 744 (267.0 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
Identities = 149/283 (52%), Positives = 199/283 (70%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VGPF++K ER +T D T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSER-ATND-T 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE L+++F +G ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMD--NKNRKFCFINYADAESAKNAM 248
Query: 277 EALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
+ LNGKK DD + KK E G Q+ ADK
Sbjct: 249 DNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 323 (118.8 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
Identities = 65/122 (53%), Positives = 86/122 (70%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG Q + R LK KF+ E +K +G+NLY+KNLDD I D L+ELF FGTIT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S KVMRD S+G GFV F++ EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 537
Query: 410 QF 411
+F
Sbjct: 538 RF 539
Score = 252 (93.8 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 69/206 (33%), Positives = 104/206 (50%)
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
R+ + K+ N++VKNL ++ L F FG I S V D GKSK +GFV+++D
Sbjct: 94 RDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYED 153
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+ A ++E +NG + K YVG KK ER + +T KF NLYVKN
Sbjct: 154 EESAKEAIEKVNGVQLGSKNVYVGPFIKKSER----------ATNDT--KFT--NLYVKN 199
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
DS+++ L++LF+ +G ITS V D +R F+ ++ AE A A+ +NGK +
Sbjct: 200 FPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKIT 257
Query: 389 SK-PLYVALAQRKEERRARLQAQFSQ 413
+ +KEE A +Q
Sbjct: 258 DDGQIDETYDPKKEEATASTSGAANQ 283
Score = 215 (80.7 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 63/185 (34%), Positives = 98/185 (52%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + A+ + + SL+++ G N++VKNLD SI + L
Sbjct: 77 LNYTNIKGQP-----ARLMWSHR-------DPSLRKSGT---G-NIFVKNLDKSIDNKAL 120
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 399 RKEER 403
+K ER
Sbjct: 181 KKSER 185
Score = 209 (78.6 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
Identities = 57/201 (28%), Positives = 102/201 (50%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ L+D F+ G ++S +V D +S YG+V+Y A A+++
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEK 163
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGN 153
+N L K + Y P I+KS N+++KN S+ L F+ +G
Sbjct: 164 VNGVQLGSKNV-----YVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGE 218
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
I S V D+ ++R + F+ + + ESAK+A+D LNG + D + K+E E+TA
Sbjct: 219 ITSMIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKE-EATA 275
Query: 214 DKTRFNNVYVKNLSETTTEDD 234
+ N ++ T ++D
Sbjct: 276 STSGAANQTTGTDADKTDKND 296
Score = 168 (64.2 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 35/90 (38%), Positives = 56/90 (62%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD ID+ L + F FG I S KV D QS+G+GFV F ++E A A+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ ++N K ++VG ++++R S + RF
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQ-RF 539
Score = 161 (61.7 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 51/170 (30%), Positives = 84/170 (49%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-- 201
L++ +T GN S +S G + D E +A D N + + Q
Sbjct: 371 LNENNNTAGNNNSTNNNNNSGSSMNNAGSAKKD-ETAASDCADTPNILYVGPHQSRARRH 429
Query: 202 PFLR-KQERESTADKTRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
L+ K + + +K + N+Y+KNL + + L+++F FG ITS VMRD +S
Sbjct: 430 AILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQS 489
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F ++A ++V ++ K + K YVG A+K+ +R L+ +F
Sbjct: 490 KGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 133 (51.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
+N V + + +LY+ +LD ++D L +LF G + S +V RD +S G+G+V
Sbjct: 437 DNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFV 495
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRI 113
+ + EA +A+ E++ +NGKP+ +
Sbjct: 496 CFASQEEANKAVTEMHLKIINGKPLYV 522
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
++ K + + L + + L+ K+ L + +NEE K ID+
Sbjct: 813 SMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDE 866
Score = 37 (18.1 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 392 LYVALAQRKEERRARLQAQF 411
LYV Q + R A L+A+F
Sbjct: 417 LYVGPHQSRARRHAILKAKF 436
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 744 (267.0 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
Identities = 149/283 (52%), Positives = 199/283 (70%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VGPF++K ER +T D T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSER-ATND-T 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE L+++F +G ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMD--NKNRKFCFINYADAESAKNAM 248
Query: 277 EALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
+ LNGKK DD + KK E G Q+ ADK
Sbjct: 249 DNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 323 (118.8 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
Identities = 65/122 (53%), Positives = 86/122 (70%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG Q + R LK KF+ E +K +G+NLY+KNLDD I D L+ELF FGTIT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S KVMRD S+G GFV F++ EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 537
Query: 410 QF 411
+F
Sbjct: 538 RF 539
Score = 252 (93.8 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 69/206 (33%), Positives = 104/206 (50%)
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
R+ + K+ N++VKNL ++ L F FG I S V D GKSK +GFV+++D
Sbjct: 94 RDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYED 153
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+ A ++E +NG + K YVG KK ER + +T KF NLYVKN
Sbjct: 154 EESAKEAIEKVNGVQLGSKNVYVGPFIKKSER----------ATNDT--KFT--NLYVKN 199
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
DS+++ L++LF+ +G ITS V D +R F+ ++ AE A A+ +NGK +
Sbjct: 200 FPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKIT 257
Query: 389 SK-PLYVALAQRKEERRARLQAQFSQ 413
+ +KEE A +Q
Sbjct: 258 DDGQIDETYDPKKEEATASTSGAANQ 283
Score = 215 (80.7 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 63/185 (34%), Positives = 98/185 (52%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + A+ + + SL+++ G N++VKNLD SI + L
Sbjct: 77 LNYTNIKGQP-----ARLMWSHR-------DPSLRKSGT---G-NIFVKNLDKSIDNKAL 120
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 399 RKEER 403
+K ER
Sbjct: 181 KKSER 185
Score = 209 (78.6 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
Identities = 57/201 (28%), Positives = 102/201 (50%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ L+D F+ G ++S +V D +S YG+V+Y A A+++
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEK 163
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGN 153
+N L K + Y P I+KS N+++KN S+ L F+ +G
Sbjct: 164 VNGVQLGSKNV-----YVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGE 218
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
I S V D+ ++R + F+ + + ESAK+A+D LNG + D + K+E E+TA
Sbjct: 219 ITSMIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKE-EATA 275
Query: 214 DKTRFNNVYVKNLSETTTEDD 234
+ N ++ T ++D
Sbjct: 276 STSGAANQTTGTDADKTDKND 296
Score = 168 (64.2 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 35/90 (38%), Positives = 56/90 (62%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD ID+ L + F FG I S KV D QS+G+GFV F ++E A A+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ ++N K ++VG ++++R S + RF
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQ-RF 539
Score = 161 (61.7 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 51/170 (30%), Positives = 84/170 (49%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-- 201
L++ +T GN S +S G + D E +A D N + + Q
Sbjct: 371 LNENNNTAGNNNSTNNNNNSGSSMNNAGSAKKD-ETAASDCADTPNILYVGPHQSRARRH 429
Query: 202 PFLR-KQERESTADKTRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
L+ K + + +K + N+Y+KNL + + L+++F FG ITS VMRD +S
Sbjct: 430 AILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQS 489
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F ++A ++V ++ K + K YVG A+K+ +R L+ +F
Sbjct: 490 KGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 133 (51.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
+N V + + +LY+ +LD ++D L +LF G + S +V RD +S G+G+V
Sbjct: 437 DNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFV 495
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRI 113
+ + EA +A+ E++ +NGKP+ +
Sbjct: 496 CFASQEEANKAVTEMHLKIINGKPLYV 522
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
++ K + + L + + L+ K+ L + +NEE K ID+
Sbjct: 813 SMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDE 866
Score = 37 (18.1 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 392 LYVALAQRKEERRARLQAQF 411
LYV Q + R A L+A+F
Sbjct: 417 LYVGPHQSRARRHAILKAKF 436
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
Identities = 210/386 (54%), Positives = 276/386 (71%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD +TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+K L+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND++VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +F FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-----------GLNLYVK 327
+NGK + K+ YVG+AQKK ER+ ELK KF Q +K+ K E G+NLYVK
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKPKIEQVPQDRSVRCQGVNLYVK 309
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 368
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQ 413
+KPLYVALAQRKEER+A L Q+ Q
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQ 394
Score = 433 (157.5 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 102/296 (34%), Positives = 168/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
E A+ A+D +N ++ K V + +R+ + K+ N++VKNL + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ ++A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
+R+ EL + A +F N+Y+KNL + + D++L++LFS FG S KVM D
Sbjct: 177 RDRQAELGAR--------AKEFT--NVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
Score = 185 (70.2 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 39/97 (40%), Positives = 58/97 (59%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKNL + ++ L+K F FG ITS V + G+SK FGFV F P++A ++V +
Sbjct: 305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEM 363
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
NG+ K YV AQ+K ER+ L ++ Q + T+
Sbjct: 364 NGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTS 400
Score = 141 (54.7 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 30/80 (37%), Positives = 53/80 (66%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L DLF++ G +SV+V D S + S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGK-SKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N LNGK I +
Sbjct: 244 ARKAVDEMNGKDLNGKQIYV 263
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
Identities = 201/339 (59%), Positives = 259/339 (76%)
Query: 77 TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
TRRSLGY YVN+ +A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLD
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
KSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND+
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 121
Query: 197 QVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
+VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S VM D
Sbjct: 122 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 181
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKE 314
GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++
Sbjct: 182 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 241
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
+++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EE
Sbjct: 242 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEE 300
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
A+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 301 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 339
Score = 410 (149.4 bits), Expect = 2.8e-38, P = 2.8e-38
Identities = 98/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 114
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L D F FG
Sbjct: 115 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 172
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 173 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 232
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 233 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 291
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 292 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 341
Score = 267 (99.0 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 66/195 (33%), Positives = 110/195 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 142 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 198
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 199 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 257
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 258 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 316
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 317 PLYVALAQRKEERQA 331
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 201/377 (53%), Positives = 274/377 (72%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V+++ L++ F+ G V+S+RVCRD ++R SLGY YVN+ +A RALD
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF ++G+P+RIM+S RDP R++G GNIFIKNLD+ IDNK+++DTFS FGNILSCKVA
Sbjct: 118 MNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 177
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT--RF 218
TD G S+GYGFV F+ E SA++AI+K+NGMLL+DK+V+VG F + +R ++ ++
Sbjct: 178 TDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKY 237
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN E ++ L +F +FG ITS VM DA GK K FGFV F D D A ++VE
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 279 LNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LN + D + V +AQKK ER ELK K+E +E +++G+NLYVKN+++ ++DD
Sbjct: 298 LNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDD 357
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L++ FS FGTITS KVM D NG S+G GFV F EEA+ A+T+MN KM+ +KPLYVAL
Sbjct: 358 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+RRA+L +Q+ Q
Sbjct: 418 AQRKEDRRAQLASQYMQ 434
Score = 315 (115.9 bits), Expect = 2.4e-27, P = 2.4e-27
Identities = 73/198 (36%), Positives = 111/198 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+F+KN + +D + L FS FG I S V TD+ G+ +G+GFV F ++++A A++KL
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 189 NGMLLN--DKQVFVGPFLRKQERESTADKT----------RFN--NVYVKNLSETTTEDD 234
N +L D ++ V +K ER + + R+ N+YVKN+ E +D
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 358
Query: 235 LKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
L+ F FG ITS VM D +G+SK FGFV F+ P++A +V +N K K YV A
Sbjct: 359 LRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
Query: 295 QKKYEREMELKGKFEQSL 312
Q+K +R +L ++ Q L
Sbjct: 419 QRKEDRRAQLASQYMQRL 436
Score = 249 (92.7 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 57/186 (30%), Positives = 107/186 (57%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ + ++++ +LD +++ +YD F+ G ++S +V D S GYG+V++ H
Sbjct: 139 ARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHS 197
Query: 94 ATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSG-AG----NIFIKNLDKSIDNKALHDT 147
A A++++N L+ K + + + R +++ G +G N+F+KN + +D + L
Sbjct: 198 AQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAM 257
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN--DKQVFVGPFLR 205
FS FG I S V TD+ G+ +G+GFV F ++++A A++KLN +L D ++ V +
Sbjct: 258 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 317
Query: 206 KQERES 211
K ER +
Sbjct: 318 KSERSA 323
Score = 120 (47.3 bits), Expect = 0.00058, P = 0.00058
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +++ +ND L D F+ G + S +V D RS G+G+V + EA
Sbjct: 338 QRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEA 396
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T A+ ++N + KP+ + + R
Sbjct: 397 TAAVTDMNSKMIGAKPLYVALAQR 420
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 191/339 (56%), Positives = 250/339 (73%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
I D++L++ FS FGTITS KVM + G S+G GFV FS
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFS 341
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 101/296 (34%), Positives = 167/296 (56%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 192/368 (52%), Positives = 257/368 (69%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN RAL
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
DELN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 101 DELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCK 160
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 161 VAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 220
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN+ +++ +K+F +FG ITS + RD++GKS+ FGFVNF + A +V
Sbjct: 221 NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D + DD
Sbjct: 281 EEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF +GTITS KVMRD + + T E A+K N K + A
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATP--ESETKESANKE----NEKAAEGEKEPAAE 394
Query: 397 AQRKEERR 404
+ KEE++
Sbjct: 395 EKEKEEKK 402
Score = 436 (158.5 bits), Expect = 1.9e-40, P = 1.9e-40
Identities = 104/314 (33%), Positives = 165/314 (52%)
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ N TP N + T + + ++++ LD S+ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 159 VATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
V D++ + S GY +V +++ + A+D+LN L+ K + +R+ KT
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
NV++KNL L F FG I S V +D G SK +GFV+++ + A +++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG +DK+ +VG K +R+ KFE+ K N+Y+KN+D + D++
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQ----SKFEEM------KANFTNIYIKNIDPEVEDEE 238
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
++LF +FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV A
Sbjct: 239 FRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 398 QRKEERRARLQAQF 411
Q+K ER L+ Q+
Sbjct: 299 QKKHEREEELRKQY 312
Score = 176 (67.0 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 46/101 (45%), Positives = 63/101 (62%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
E KE+A+K E + + +++K KE E K + P G S+G GFV
Sbjct: 370 ESETKESANK-ENEKA-AEGEKEPAAEEKEKEEKKE----AEQKPEKKPLGKSKGFGFVC 423
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 424 FSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 464
Score = 108 (43.1 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
GKSK FGFV F PD+A+++V +N + + K YV AQ+K R +L+ +
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 467
Score = 71 (30.1 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
A ++ +LYV +L V+D +L +LF G + S +V RD
Sbjct: 320 ASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 40 (19.1 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 303 ELKGKFE--QSLKETADKFEGLNLY---VKNLDDSISDDKLKELFSE 344
EL G E ++L+ D E L++Y +KN D + +K KE E
Sbjct: 680 ELLGLLEDDEALRAKVD--EALSVYDEYMKNKSDEPAAEKPKEAAQE 724
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 191/322 (59%), Positives = 248/322 (77%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQ 320
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 97/290 (33%), Positives = 159/290 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S +V D + + G+ + AA A ++
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 95
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+ + K + R + GA N++IKN + +D++ L + F FG
Sbjct: 96 GMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 272
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 263 (97.6 bits), Expect = 4.2e-20, P = 4.2e-20
Identities = 65/195 (33%), Positives = 110/195 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S + S G+G+V++ +
Sbjct: 123 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 179
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 238
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 239 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 297
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 298 PLYVALAQRKEERQA 312
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 190/322 (59%), Positives = 246/322 (76%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 164
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 165 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 223
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 224 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 283
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 284 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 343
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 344 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 402
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 403 LYVALAQRKEERKAHLTNQYMQ 424
Score = 437 (158.9 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 97/288 (33%), Positives = 166/288 (57%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D S GY +V++ A +A+++
Sbjct: 140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEK 197
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+++L + FS FG
Sbjct: 198 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 257
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+S+G+GFV ++ E A A++++NG ++ K +FVG +K ER++
Sbjct: 258 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 317
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 318 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 376
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q
Sbjct: 377 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 424
Score = 276 (102.2 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 69/210 (32%), Positives = 117/210 (55%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S + S G+G+V+Y +
Sbjct: 227 AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHED 283
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 284 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 343
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 344 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 402
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 403 LYVALAQRKEER-----KAHLTNQYMQRVA 427
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 706 (253.6 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
Identities = 141/257 (54%), Positives = 190/257 (73%)
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKT 216
V D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 156
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 216
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D+
Sbjct: 217 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 276
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVAL
Sbjct: 277 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 335
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKEER+A L Q+ Q
Sbjct: 336 AQRKEERQAHLTNQYMQ 352
Score = 407 (148.3 bits), Expect = 8.5e-38, P = 8.5e-38
Identities = 93/251 (37%), Positives = 144/251 (57%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIK 133
S GYG+V++ A RA++++N LN + + + + R + GA N++IK
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
N + +D++ L D F FG LS KV TD G+S+G+GFV F+ E A+ A+D++NG L
Sbjct: 165 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 224
Query: 194 NDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGE 241
N KQ++VG +K ER++ + TR+ N+YVKNL + ++ L+K F
Sbjct: 225 NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSP 284
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
FG ITS VM + G+SK FGFV F P++A ++V +NG+ K YV AQ+K ER+
Sbjct: 285 FGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 343
Query: 302 MELKGKFEQSL 312
L ++ Q +
Sbjct: 344 AHLTNQYMQRM 354
Score = 270 (100.1 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
A RALD +NF + GKP+RIM+S RDP++RKSG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 267 (99.0 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 66/195 (33%), Positives = 110/195 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 155 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 211
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 212 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 270
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 271 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 329
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 330 PLYVALAQRKEERQA 344
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 184/315 (58%), Positives = 242/315 (76%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +DA ++VE
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 240 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 299 RKEERKAHLTNQYMQ 313
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 97/288 (33%), Positives = 165/288 (57%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D S GY +V++ A +A+++
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + FS FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+S+G+GFV ++ E A A++++NG ++ K +FVG +K ER++
Sbjct: 147 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 207 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 313
Score = 279 (103.3 bits), Expect = 5.4e-22, P = 5.4e-22
Identities = 69/210 (32%), Positives = 117/210 (55%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S + S G+G+V+Y +
Sbjct: 116 AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHED 172
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 173 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 232
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 233 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 291
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 292 LYVALAQRKEER-----KAHLTNQYMQRVA 316
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 181/342 (52%), Positives = 243/342 (71%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 347
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 97/296 (32%), Positives = 164/296 (55%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 176/317 (55%), Positives = 232/317 (73%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMR 355
++ FS +G ITS K R
Sbjct: 311 RKEFSPYGVITSAKKRR 327
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 100/294 (34%), Positives = 161/294 (54%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
SG+G ++++ +L + L++ FS G ILS +V D + +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N +L + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I S V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL + +L+ T N+YVKNL + + L++LFS+FG + S KVMRD +G
Sbjct: 179 REAELGAR---ALEFT-------NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
SR GFV F EEA KA+ MNGK V + LY AQ++ ER+ L+ +F Q
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 163 (62.4 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 44/141 (31%), Positives = 75/141 (53%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+ +N ++G+ + R + +R+ N+++KNLD
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCK 158
SID+ L FS +G I S K
Sbjct: 304 SIDDDKLRKEFSPYGVITSAK 324
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 180/368 (48%), Positives = 254/368 (69%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 96/286 (33%), Positives = 161/286 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 217 (81.4 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 66/210 (31%), Positives = 110/210 (52%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-N 323
NF DA ++++ +N FD + GK+ ++ + Q ++ + G+ N
Sbjct: 115 NFLQLADAQKALDTMN---FDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGN 157
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMN
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 216
Query: 384 GKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
GK++ ++V + +++R A L+++ S+
Sbjct: 217 GKLLKGCKVFVGRFKNRKDREAELRSKASE 246
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 180/368 (48%), Positives = 254/368 (69%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 96/286 (33%), Positives = 161/286 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
Score = 213 (80.0 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 65/205 (31%), Positives = 108/205 (52%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKN 328
DA ++++ +N FD + GK+ ++ + Q ++ + G+ N+++KN
Sbjct: 62 ADAQKALDTMN---FDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGNVFIKN 104
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK++
Sbjct: 105 LDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLK 163
Query: 389 SKPLYVALAQRKEERRARLQAQFSQ 413
++V + +++R A L+++ S+
Sbjct: 164 GCKVFVGRFKNRKDREAELRSKASE 188
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 181/401 (45%), Positives = 263/401 (65%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+ SLYVGDL SV + LYD F + + SVR+C+D S+ RSL YGY N+ + +A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++ N + LNGK IR+M+S R P R++G GN+F+KNL +S+ N L D F FGNI+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVAT G+SRGYGFVQF+ E++A +AI LN ++ DK+++VG F++K +R +K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEK-- 199
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL +ED L++ F EFG I S A+ +D + + + FVNFD+P+DA R+ E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG KF K YVG+AQKK ERE L+ +F++ +E + N+YVKN++ ++++++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+ GTITS K+M D G S+G GFV FST EEA A+ +G+M KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 398 QRKEERRARLQAQFSQXXXXXXXXXXXXXXXAPGLGQQLFY 438
Q+KE+R+ +LQ QF PG L+Y
Sbjct: 380 QKKEDRKMQLQVQFGNRVEARKSSSSASVN--PGTYAPLYY 418
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 103/290 (35%), Positives = 161/290 (55%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L SV ++ L D+F + G +VS +V L +S GYG+V +
Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQED 163
Query: 93 EATRALDELNFTPLNGKPIRI-MYSYRDPTIR-KSGAGNIFIKNLDKSIDNKALHDTFST 150
A A+ LN T + K I + + + ++ + N+++KNLD + L + F+
Sbjct: 164 AAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE 223
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I+S +A D RGY FV FDN E A+ A + +NG K ++VG +K ERE
Sbjct: 224 FGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Query: 211 STA-----DK-------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
+K + +N+YVKN++ TE++L+K F + G ITST +M D GKS
Sbjct: 284 QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F P++A +V+ +G+ F K YV AQKK +R+M+L+ +F
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 177/317 (55%), Positives = 234/317 (73%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++ LN+ L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVA D+ G S+GYGFVQF ++ S +A + NG L+ ++ + V PF+ + + DK+R
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQW----DKSR 116
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL ET T+ DLK++FGEFG ITS VM+D +GKS+ FGFVNF+ + A ++
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISD 335
E +NG D+KE +VG+AQ+K R +LK KFE + + +G+NLYVKNLDDS+ +
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+ELFSEFGTITSCKVM NGIS+G GFV FST+EEASKA+ +MNGKMV +KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 396 LAQRKEERRARLQAQFS 412
LAQ KE+ + LQ QF+
Sbjct: 297 LAQCKEQHKLHLQTQFN 313
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 95/282 (33%), Positives = 157/282 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQFYSDLSVYTACNF 90
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R + N+++KNL ++ + L F FG I S V
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD----- 214
D G+SR +GFV F+ E+A +AI+K+NG+++++K++ VG RK R
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFEL 210
Query: 215 -------KTRFN-NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
KTR N+YVKNL ++ L+++F EFG ITS VM ++G SK GFV F
Sbjct: 211 EKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEF 270
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
++A++++ +NGK +K YV AQ K + ++ L+ +F
Sbjct: 271 STSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 262 (97.3 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 66/200 (33%), Positives = 109/200 (54%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D+ L LF + G++ S V +D +S +G+VN+ A A A
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTA 175
Query: 98 LDELNFTPLNGKPIRIMYSYR--------------DPTIR--KSGAG-NIFIKNLDKSID 140
++++N ++ K + + + R + IR K+ G N+++KNLD S+D
Sbjct: 176 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 235
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
N L + FS FG I SCKV S G S+G GFV+F E A A+ K+NG ++ +K ++V
Sbjct: 236 NTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Query: 201 GPFLRKQERESTADKTRFNN 220
+ +E+ +T+FNN
Sbjct: 296 S-LAQCKEQHKLHLQTQFNN 314
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 184/373 (49%), Positives = 252/373 (67%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++++ +LYVGDLD V + LY F G + R+CRD TR LGYGYVN+
Sbjct: 10 GKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFP 69
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A AL+ +NF +NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GNILSCKV D G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER +
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA 188
Query: 212 ---TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
T D+ F NV+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++
Sbjct: 189 EVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYET 248
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNLYVK 327
+ A ++V L+GK D K YVG+AQKK ER EL+ +FE+ LKE + + G+ +Y+K
Sbjct: 249 HEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS-RPPGVPIYIK 307
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLD++I+D+KLKE FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V
Sbjct: 308 NLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Query: 388 VSKPLYVALAQRK 400
SKPL+V L Q +
Sbjct: 367 GSKPLHVTLGQAR 379
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 97/286 (33%), Positives = 159/286 (55%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAIDKL 188
+++ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 189 NGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 80 NFDLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR-- 191
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV
Sbjct: 192 -------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+ T E A KA+ +++GK + K LYV AQ+K ER A L+ +F +
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFER 290
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 174/366 (47%), Positives = 248/366 (67%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ + SLYVGDL V + L+ FN +G V+S+R+CRDL + RSLGYGYVN+ +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+AL+ +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG I+
Sbjct: 66 KALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIM 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-D 214
S KV TD G S+GYGFV + ++ +A AI+++NG LL D +FV F +++RE+ +
Sbjct: 126 SSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELRE 184
Query: 215 K-TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
K F NVY+KN + ++ L+ +F ++G S VM+DA GKSK FGFV+FD A
Sbjct: 185 KPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAK 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+VE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + LY+KNLDD+I
Sbjct: 245 NAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+ L++ FS FG+I KVM++ G S+G G + F + E A+KA+ EMNG+++ SKPL
Sbjct: 305 DDETLRKEFSVFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 394 VALAQR 399
+AL Q+
Sbjct: 364 IALGQK 369
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 95/291 (32%), Positives = 162/291 (55%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAK 182
K A ++++ +L + + L F+T G +LS ++ D + +S GYG+V F A+
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
A++ +N L+ K + L +R++ K+ NV++KNL ++ L + F F
Sbjct: 66 KALETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G I S+ VM D +G SK +GFV++ D A R++E +NGK D +V + + + +RE
Sbjct: 122 GKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ K E N+Y+KN D + D+ L+ +FS++G S KVM+D +G S+
Sbjct: 181 ELREK----------PAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK 230
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
GFV+F + + A A+ +MNG+ + + ++V AQ+K ER+A L+ F Q
Sbjct: 231 RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQ 281
Score = 233 (87.1 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 69/200 (34%), Positives = 106/200 (53%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDP 269
S K R ++YV +L E TED L + F G + S + RD +S +G+VNF
Sbjct: 2 SVETKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQV 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKN 328
DA +++E +N FD GK+ ++ + Q ++ + G+ N+++KN
Sbjct: 62 GDAQKALETMN---FD---LIKGKS---------IRLMWSQ--RDACLRKSGIGNVFIKN 104
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD SI + L E FS FG I S KVM D G S+G GFV + A +A+ EMNGK++
Sbjct: 105 LDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLR 163
Query: 389 SKPLYVALAQRKEERRARLQ 408
L+VA + +++R A L+
Sbjct: 164 DSTLFVARFKSRKDREAELR 183
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 183/373 (49%), Positives = 249/373 (66%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++++ +LYVGDLD V + LY F G + R+CRD TR LGYGYVN+
Sbjct: 10 GKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFP 69
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A AL+ +NF +NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G+ILSCKV D G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER +
Sbjct: 130 GSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA 188
Query: 212 ---TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
T DK F NV+VKN + +D LK++F E+G S V+RD+ GKSK FGFV ++
Sbjct: 189 EVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYET 248
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNLYVK 327
+ A ++V L+GK D K YVG+AQKK ER EL+ +FE+ LKE + + G+ +Y+K
Sbjct: 249 HEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS-RPPGVPIYIK 307
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLD++I D+KLKE FS FG+I+ KVM + G +G G + FS+ EEA+KA+ EMNG++V
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMNGRIV 366
Query: 388 VSKPLYVALAQRK 400
SKPL V L Q +
Sbjct: 367 GSKPLQVTLGQAR 379
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 99/286 (34%), Positives = 159/286 (55%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAIDKL 188
+++ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 189 NGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 80 NFDLINGK-----PFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILS 134
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR-- 191
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T DK N++VKN D + DDKLKELFSE+G S KV+RD +G S+G GFV
Sbjct: 192 -------TRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFV 244
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+ T E A KA+ +++GK + K LYV AQ+K ER A L+ +F +
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFER 290
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 181/372 (48%), Positives = 246/372 (66%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++++ +LYVGDLD V + LY F G + R+CRD TR LGYGYVN+
Sbjct: 10 GKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFP 69
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A AL+ +NF +NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GNILSCKV D G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER +
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA 188
Query: 212 ---TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
T D+ F NV+VKN + ++ LKK+F E+G S V+RDA GKSK FGFV ++
Sbjct: 189 EVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYET 248
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+ A ++V L+GK D K VG+AQKK ER EL+ +FE+ + + G+ +Y+KN
Sbjct: 249 HEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKN 308
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD++I+D+KLKE FS FG+I+ KVM + G +G G V FS+ EEASKA+ EMNG++V
Sbjct: 309 LDETINDEKLKEEFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVNEMNGRVVG 367
Query: 389 SKPLYVALAQRK 400
SK L+V L Q +
Sbjct: 368 SKTLHVTLGQAR 379
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 97/286 (33%), Positives = 157/286 (54%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAIDKL 188
+++ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 189 NGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 80 NFDLINGK-----PFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR-- 191
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D+ N++VKN D I D+KLK+LFSE+G S KV+RD G S+G GFV
Sbjct: 192 -------TRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFV 244
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+ T E A KA+ E++GK + K L V AQ+K ER A L+ +F +
Sbjct: 245 RYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFER 290
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 81/275 (29%), Positives = 145/275 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN-YNAAHEATRALD 99
++++ +LD S+++ L+ LF+ G ++S +V D + + Y + + AA+ A ++
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 100 ELNFTPLNGKPIRIMY-SYRDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ R + R +R ++ N+F+KN ID++ L FS +G
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTE 226
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF---------LRK 206
S KV D+ G+S+G+GFV+++ E+A+ A+ +L+G ++ K + VG LR+
Sbjct: 227 SVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRR 286
Query: 207 Q-ERESTADKTRFNNV--YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+ ER DKTR V Y+KNL ET ++ LK+ F FG I+ VM + G+ K FG
Sbjct: 287 RFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEV-GQGKGFGV 345
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
V F ++A+++V +NG+ K +V Q ++
Sbjct: 346 VCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQARH 380
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 182/373 (48%), Positives = 247/373 (66%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++++ +LYVGDLD V + LY F G + R+CRD TR LGYGYVN+
Sbjct: 10 GKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFP 69
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A AL+ +NF +NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS F
Sbjct: 70 ADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAF 129
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GNILSCKV D G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER +
Sbjct: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA 188
Query: 212 ---TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
T D+ F NV+VKN ++ LK+IF +G S V+RDA GKSK FGFV ++
Sbjct: 189 EVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYET 248
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNLYVK 327
+ A ++V L+GK + K YVG+AQKK ER EL+ +FE+ LKE + + G+ +Y+K
Sbjct: 249 HEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKS-RPPGVPIYIK 307
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLD++I D+KLKE FS FG+I+ KVM + G +G G V FS+ E+A+KA+ EMNG+ V
Sbjct: 308 NLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMNGRTV 366
Query: 388 VSKPLYVALAQRK 400
SKPL+V L Q +
Sbjct: 367 GSKPLHVTLGQAR 379
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 94/286 (32%), Positives = 158/286 (55%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAIDKL 188
+++ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 189 NGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 80 NFDLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR-- 191
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D+ N++VKN + + D+KLKE+FS +G S KV+RD +G S+G GFV
Sbjct: 192 -------TRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFV 244
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+ T E A KA+ +++GK + K LYV AQ+K ER A L+ +F +
Sbjct: 245 RYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFER 290
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 167/287 (58%), Positives = 219/287 (76%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+FIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F+ +E+A AI+K+
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 189 NGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++ LK++F +FG
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S VMRD +GKSK FGFV+++ +DA ++VE +NGK+ K +VG+AQKK ER+ ELK
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 180
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
KFEQ +E +++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + +G S+G GF
Sbjct: 181 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 239
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
V FS+ EEA+KA+TEMNG++V SKPLYVALAQRKEER+A L Q+ Q
Sbjct: 240 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 286
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 97/288 (33%), Positives = 166/288 (57%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D S GY +V++ A +A+++
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEK 59
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+++L + FS FG
Sbjct: 60 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 119
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+S+G+GFV ++ E A A++++NG ++ K +FVG +K ER++
Sbjct: 120 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 179
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 180 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 238
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q
Sbjct: 239 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 286
Score = 273 (101.2 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 68/210 (32%), Positives = 116/210 (55%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD +S G+G+V+Y +
Sbjct: 89 AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 145
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 146 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 205
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 206 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 264
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 265 LYVALAQRKEER-----KAHLTNQYMQRVA 289
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 795 (284.9 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 168/374 (44%), Positives = 239/374 (63%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L D F+ VVSV +CR+ T +S+ Y Y+N+++ A+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRK---SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LN + L GK +RIM+S RD R+ +G N+++KNLD SI + L F FG+ILSC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV ++ GQS+G+GFVQFD E+SA SA L+G ++ K++FV F+ K ER + A
Sbjct: 142 KVVEEN-GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD 200
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
NVYVKNL ET T+D L +F ++G ++S VMRD G+S+ FGFVNF +P++A +++E
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+L G + K+ +VGKA KK ER LK KF + + NLYVKNL +S+++ +
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPN-MRWSNLYVKNLSESMNETR 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E+F +G I S KVM NG S+G GFV FS EE+ +A +NG +V KP+ V +A
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 398 QRKEERRARLQAQF 411
+RKE+R RLQ F
Sbjct: 380 ERKEDRIKRLQQYF 393
Score = 400 (145.9 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 99/284 (34%), Positives = 160/284 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV +LD S+ S L +F G ++S +V + +S G+G+V ++ A A
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSA 170
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSG---AGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
L+ + + GK + + + +D +G + N+++KNL +++ + LH FS +G + S
Sbjct: 171 LHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSS 230
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADK 215
V D +G+SRG+GFV F N E+AK A++ L G+ L K++FVG L+K ER E K
Sbjct: 231 VVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQK 290
Query: 216 ----------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
R++N+YVKNLSE+ E L++IFG +G I S VM +G+SK FGFV
Sbjct: 291 FSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVC 350
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
F + +++ ++ LNG D K V A++K +R L+ F+
Sbjct: 351 FSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQ 394
Score = 390 (142.3 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 101/286 (35%), Positives = 156/286 (54%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAID 186
G++++ +L + K L D FS ++S + +S+ G+S Y ++ FD+ SA +A+
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+LN L K + + + ++ +T F N+YVKNL + T L+++F FG I
Sbjct: 81 RLNHSDLKGKAMRI-MWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSIL 139
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ + +G+SK FGFV FD A + AL+G K+ +V K K ER
Sbjct: 140 SCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAA---- 194
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
A + N+YVKNL ++++DD L LFS++GT++S VMRD G SRG GF
Sbjct: 195 --------MAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGF 246
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412
V F E A KA+ + G + SK L+V A +K+ERR L+ +FS
Sbjct: 247 VNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS 292
Score = 270 (100.1 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 73/191 (38%), Positives = 105/191 (54%)
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAAR 274
+RF ++YV +LS TE DL F + S + R++ GKS C+ ++NFD P A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++ LN D K GKA + + +L + + T F NLYVKNLD SI+
Sbjct: 78 AMTRLNHS--DLK----GKAMRIMWSQRDLAYR-----RRTRTGFA--NLYVKNLDSSIT 124
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
L+ +F FG+I SCKV+ + NG S+G GFV F T + A A + ++G MV K L+V
Sbjct: 125 SSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 395 ALAQRKEERRA 405
A K+ER A
Sbjct: 184 AKFINKDERAA 194
Score = 236 (88.1 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 65/186 (34%), Positives = 99/186 (53%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
ST++YV +L +V D L+ LF+Q G V SV V RD RS G+G+VN+ A +A+
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Query: 99 DELNFTPLN------GKPIR-------IMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKA 143
+ L L GK ++ + + D I K N+++KNL +S++
Sbjct: 260 ESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETR 319
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F +G I+S KV G+S+G+GFV F N E +K A LNG L++ K + V
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 204 LRKQER 209
RK++R
Sbjct: 380 ERKEDR 385
Score = 37 (18.1 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 399 RKEERRARLQAQFS 412
RKEERR L + S
Sbjct: 511 RKEERRLTLSGKLS 524
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 695 (249.7 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 156/371 (42%), Positives = 227/371 (61%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ + S+ VCRD +T RSLGY YVN+ H+A RA
Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERA 243
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN+T ++GKP RIM+SYRDPT RK+ GNIF+KNL+K +DN L+DTFS+FGNILSC
Sbjct: 244 LDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSC 303
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV + G S+GYG+V F+ +SA+ AI+K+NG L+ K + V F+ K ER +K
Sbjct: 304 KVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENK-- 360
Query: 218 FNNVYVKNLSETTTEDDLKK-IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA---- 272
V+ +N E+ T + L++ + FG I S + DA+GKSK G V F + +DA
Sbjct: 361 ---VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Query: 273 ----ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
A + ++G + K +K K E+ E K L+L++ N
Sbjct: 418 TESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER-FTEYRKKTTDLSLFINN 476
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
+D+SI D +KE F++ GTI K+++D N ++G GF++FS +EA KAL +NG
Sbjct: 477 IDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFG 536
Query: 389 SKPLYVALAQR 399
SK + V+ + +
Sbjct: 537 SKQIQVSFSNK 547
Score = 196 (74.1 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 58/190 (30%), Positives = 97/190 (51%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFG--IITSTAVMRDADG-KSKCFGFVNFDDPDDAA 273
+ ++YV +L+ E L ++F + G I S V RD++ +S + +VNF + DA
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+++ LN Y + + + + K + G N++VKNL+ +
Sbjct: 242 RALDTLN---------YT----LVHGKPCRIMWSYRDPTKRKTNV--G-NIFVKNLEKGV 285
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+ L + FS FG I SCKV + GIS+G G+V F T + A KA+ ++NG +++ KP+
Sbjct: 286 DNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPIN 344
Query: 394 VALAQRKEER 403
V K ER
Sbjct: 345 VERFVSKVER 354
Score = 39 (18.8 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 366 FVAFSTAEEASKALTEMNGKMVVSK 390
F+ +TAEEA++ L +V++K
Sbjct: 739 FITNATAEEATETLGSEVYNLVLAK 763
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 139/257 (54%), Positives = 187/257 (72%)
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKT 216
V D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 60
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +DA ++V
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 117
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D+
Sbjct: 118 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 177
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVAL
Sbjct: 178 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 236
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKEER+A L Q+ Q
Sbjct: 237 AQRKEERQAHLTNQYMQ 253
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 92/251 (36%), Positives = 143/251 (56%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIK 133
S GYG+V++ A RA++++N LN + + + + R + GA N++IK
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 68
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
N + +D++ L D F G LS KV TD G+S+G+GFV F+ E A+ A+D++NG L
Sbjct: 69 NFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 125
Query: 194 NDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGE 241
N KQ++VG +K ER++ + TR+ N+YVKNL + ++ L+K F
Sbjct: 126 NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSP 185
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
FG ITS VM + G+SK FGFV F P++A ++V +NG+ K YV AQ+K ER+
Sbjct: 186 FGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 244
Query: 302 MELKGKFEQSL 312
L ++ Q +
Sbjct: 245 AHLTNQYMQRM 255
Score = 253 (94.1 bits), Expect = 2.7e-21, P = 2.7e-21
Identities = 66/195 (33%), Positives = 109/195 (55%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF G +SV+V D S + S G+G+V++ +
Sbjct: 59 AKEF--TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGK-SKGFGFVSFERHED 112
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 113 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 171
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 172 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 230
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 231 PLYVALAQRKEERQA 245
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 131/249 (52%), Positives = 175/249 (70%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKK 283
+V+ +NGK+
Sbjct: 247 AVDEMNGKE 255
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 86/268 (32%), Positives = 148/268 (55%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGK 385
+G S+G GFV+F E+A KA+ EMNGK
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 180 (68.4 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 38/88 (43%), Positives = 57/88 (64%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N++VKNLD SI++ L + S FG I SC V+ D NG S+G GFV F T E A +A+ +M
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQ 410
NG ++ + ++V + ++ER A L A+
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR 186
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 118/217 (54%), Positives = 159/217 (73%)
Query: 199 FVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
FVG F ++ERE+ A F NVY+KN E ++ LK++FG+FG S VM D G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
KSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++
Sbjct: 61 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 120
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
+++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+
Sbjct: 121 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 179
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 180 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 216
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 78/196 (39%), Positives = 118/196 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKN + +D++ L + F FG LS KV TD G+S+G+GFV F+ E A+ A+D++
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLK 236
NG LN KQ++VG +K ER++ + TR+ N+YVKNL + ++ L+
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 143
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K F FG ITS VM + G+SK FGFV F P++A ++V +NG+ K YV AQ+
Sbjct: 144 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 202
Query: 297 KYEREMELKGKFEQSL 312
K ER+ L ++ Q +
Sbjct: 203 KEERQAHLTNQYMQRM 218
Score = 263 (97.6 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 65/195 (33%), Positives = 110/195 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S + S G+G+V++ +
Sbjct: 19 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 75
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 76 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 134
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 135 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 193
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 194 PLYVALAQRKEERQA 208
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 118/217 (54%), Positives = 158/217 (72%)
Query: 199 FVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
FVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S VM D G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
KSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++
Sbjct: 62 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 121
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
+++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 180
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 181 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 217
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 79/196 (40%), Positives = 118/196 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKN + +D++ L D F FG LS KV TD G+S+G+GFV F+ E A+ A+D++
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLK 236
NG LN KQ++VG +K ER++ + TR+ N+YVKNL + ++ L+
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 144
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K F FG ITS VM + G+SK FGFV F P++A ++V +NG+ K YV AQ+
Sbjct: 145 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 203
Query: 297 KYEREMELKGKFEQSL 312
K ER+ L ++ Q +
Sbjct: 204 KEERQAHLTNQYMQRM 219
Score = 267 (99.0 bits), Expect = 6.8e-23, P = 6.8e-23
Identities = 66/195 (33%), Positives = 110/195 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 20 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 76
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 77 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 135
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 136 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 194
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 195 PLYVALAQRKEERQA 209
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 106/195 (54%), Positives = 139/195 (71%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 219 NNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 226 (84.6 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 57/193 (29%), Positives = 97/193 (50%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 178 ARQSTSADVKDFE 190
Score = 192 (72.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 63/187 (33%), Positives = 95/187 (50%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN FD V K + R M + + SL+++ G N+++KNL +I + L
Sbjct: 63 LN---FD-----VIKGRPV--RIMW--SQRDPSLRKSG---VG-NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRA 405
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 106/195 (54%), Positives = 139/195 (71%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 219 NNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 226 (84.6 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 57/193 (29%), Positives = 97/193 (50%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 178 ARQSTSADVKDFE 190
Score = 192 (72.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 63/187 (33%), Positives = 95/187 (50%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN FD V K + R M + + SL+++ G N+++KNL +I + L
Sbjct: 63 LN---FD-----VIKGRPV--RIMW--SQRDPSLRKSG---VG-NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRA 405
+ER A
Sbjct: 166 SHKEREA 172
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 102/173 (58%), Positives = 131/173 (75%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL V +S LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL
Sbjct: 1 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 60
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ +NF +NG+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCK
Sbjct: 61 ETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
VA D G +GYGFV F +ESA+ AID LNGM LN +++FVG F +ERE+
Sbjct: 121 VACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREA 172
Score = 227 (85.0 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 63/210 (30%), Positives = 110/210 (52%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 63 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ALNG + ++ +VG+ + ERE E +G
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE-RGA 176
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+ + + T+ F K+ DD SDD+
Sbjct: 177 WAR--QSTSADF-------KDFDDD-SDDE 196
Score = 187 (70.9 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 56/187 (29%), Positives = 93/187 (49%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + SL+++ G N+++KNL +I + L
Sbjct: 63 MNFDVINGRPVRIMWSQR------------DPSLRKSG---VG-NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ +NG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRA 405
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 106/195 (54%), Positives = 139/195 (71%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 219 NNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 222 (83.2 bits), Expect = 8.0e-18, P = 8.0e-18
Identities = 56/193 (29%), Positives = 96/193 (49%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 178 ARQSTSADVKDFE 190
Score = 191 (72.3 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 63/187 (33%), Positives = 95/187 (50%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN FD V K + R M + + SL+++ G N+++KNL +I + L
Sbjct: 63 LN---FD-----VIKGRPV--RIMW--SQRDPSLRKSG---VG-NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRA 405
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 106/195 (54%), Positives = 139/195 (71%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 219 NNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 224 (83.9 bits), Expect = 4.8e-18, P = 4.8e-18
Identities = 57/193 (29%), Positives = 97/193 (50%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 178 ARQSTSADVKDFE 190
Score = 190 (71.9 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 63/187 (33%), Positives = 95/187 (50%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN FD V K + R M + + SL+++ G N+++KNL +I + L
Sbjct: 63 LN---FD-----VIKGRPV--RIMW--SQRDPSLRKSG---VG-NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRA 405
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 103/217 (47%), Positives = 150/217 (69%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERES---TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NG+ LN++QV+VG F +ER + T D+ F NV+VKN+ + ++ LK++F E+G
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 60
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
S V+RDA GKSK FGFV ++ + A ++V L+GK D K YVG+AQKK ER EL
Sbjct: 61 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 120
Query: 305 KGKFEQ-SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
+ +FE+ LKE + + G+ +Y+KNLD++I+D+KLKE FS FG+I+ KVM + G +G
Sbjct: 121 RRRFERLRLKEKS-RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKG 178
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 179 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Score = 255 (94.8 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 62/183 (33%), Positives = 107/183 (58%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+F+KN+ ID++ L + F +G S KV D+ G+S+G+GFV+++ E+A+ A+ L
Sbjct: 36 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 189 NGMLLNDKQVFVGPF---------LRKQ-ERESTADKTRFNNV--YVKNLSETTTEDDLK 236
+G ++ K ++VG LR++ ER +K+R V Y+KNL ET ++ LK
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 155
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKA 294
+ F FG I+ VM + G+ K FG V F ++A ++V+ +NG+ K +V G+A
Sbjct: 156 EEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 214
Query: 295 QKK 297
+++
Sbjct: 215 RRR 217
Score = 251 (93.4 bits), Expect = 4.5e-21, P = 4.5e-21
Identities = 55/135 (40%), Positives = 84/135 (62%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + ++++ YVG+ + ER E++ T D+ N++VKN+ D I D+KL
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDIDDEKL 51
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KELF E+G S KV+RD +G S+G GFV + T E A KA+ +++GK + K LYV AQ
Sbjct: 52 KELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 111
Query: 399 RKEERRARLQAQFSQ 413
+K ER A L+ +F +
Sbjct: 112 KKIERLAELRRRFER 126
Score = 206 (77.6 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 56/177 (31%), Positives = 100/177 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+++V ++ ++D +L +LF + G SV+V RD S + S G+G+V Y A +A+
Sbjct: 35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 93
Query: 100 ELNFTPLNGKPIRIMYSY-----------RDPTIR---KSGAGN--IFIKNLDKSIDNKA 143
+L+ ++GK + + + R +R KS I+IKNLD++I+++
Sbjct: 94 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 153
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
L + FS+FG+I KV + +GQ +G+G V F + E A A+D++NG ++ K + V
Sbjct: 154 LKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 94/191 (49%), Positives = 137/191 (71%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+G I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+
Sbjct: 112 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 171
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
K+NGML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G IT
Sbjct: 172 KVNGMLCNNQKVHVVKFIPRRDREQEK-ATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 230
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW-YVGKAQKKYEREMELK 305
S +M D +G+S+ FGFV +++P A +V L+GK+ D ++ YV +A K ER+ E+
Sbjct: 231 SHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 290
Query: 306 GKFEQSLKETA 316
K E+ ++ A
Sbjct: 291 RKLEERKRQKA 301
Score = 264 (98.0 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 67/194 (34%), Positives = 105/194 (54%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E K T K NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE---------KATHFK----NLYVKNLSEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARLQAQFSQ 413
K ER+ + + +
Sbjct: 282 KAERQQEINRKLEE 295
Score = 241 (89.9 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 56/193 (29%), Positives = 105/193 (54%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
+ GG G S +Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V
Sbjct: 100 STGGSGGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFV 158
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKA 143
++++ A A++++N N + + ++ RD K+ N+++KNL + +
Sbjct: 159 HFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQH 218
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGP 202
L + F +G I S K+ D G+SR +GFV ++N +SA +A+ L+G L D K ++V
Sbjct: 219 LREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVAR 278
Query: 203 FLRKQERESTADK 215
L K ER+ ++
Sbjct: 279 ALSKAERQQEINR 291
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 80/125 (64%), Positives = 97/125 (77%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCK 158
ILSCK
Sbjct: 125 ILSCK 129
Score = 132 (51.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 32/120 (26%), Positives = 60/120 (50%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Score = 130 (50.8 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 47/134 (35%), Positives = 69/134 (51%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N FD V K K R M + + SL+++ G N+++KNLD SI + L
Sbjct: 72 MN---FD-----VIKG--KPIRIMW--SQRDPSLRKSG---VG-NVFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCK 352
+ FS FG I SCK
Sbjct: 116 YDTFSAFGNILSCK 129
Score = 107 (42.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFS 370
+ A + +LYV +L +++ L E FS G + S +V RD S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+A +AL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 79/125 (63%), Positives = 97/125 (77%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCK 158
ILSCK
Sbjct: 125 ILSCK 129
Score = 133 (51.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 34/130 (26%), Positives = 63/130 (48%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITS 247
F FG I S
Sbjct: 118 TFSAFGNILS 127
Score = 132 (51.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 48/134 (35%), Positives = 69/134 (51%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N FD V K K R M + + SL+++ G N+++KNLD SI + L
Sbjct: 72 MN---FD-----VIKG--KPVRIMW--SQRDPSLRKSG---VG-NIFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCK 352
+ FS FG I SCK
Sbjct: 116 YDTFSAFGNILSCK 129
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFS 370
+ +A + +LYV +L +++ L E FS G I S +V RD S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+A +AL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 83/140 (59%), Positives = 111/140 (79%)
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 394 VALAQRKEERRARLQAQFSQ 413
VALAQRKEER+A L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 224 (83.9 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 51/139 (36%), Positives = 82/139 (58%)
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTT 231
A++++NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 61
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ L+K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV
Sbjct: 62 DEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
Query: 292 GKAQKKYEREMELKGKFEQ 310
AQ+K ER+ L ++ Q
Sbjct: 121 ALAQRKEERKAHLTNQYMQ 139
Score = 180 (68.4 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 108
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER K N Y++ ++
Sbjct: 109 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 142
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 28/100 (28%), Positives = 57/100 (57%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 45 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 102
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 103 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 141
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 389 (142.0 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 78/154 (50%), Positives = 107/154 (69%)
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKT 216
V D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +DA ++V
Sbjct: 102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 161
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
E +NGK+ K +VG+AQKK ER+ ELK KFEQ
Sbjct: 162 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
Score = 327 (120.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 70/164 (42%), Positives = 107/164 (65%)
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + FV+F+ + A +++E +NG +D++ +VG+ + + ERE EL K
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-- 99
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
A +F N+Y+KN + + D+ LKELFS+FG S KVMRDPNG S+G GFV++
Sbjct: 100 ------AKEFT--NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSY 151
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
E+A+KA+ EMNGK + K ++V AQ+K ER+A L+ +F Q
Sbjct: 152 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
Score = 219 (82.2 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 47/148 (31%), Positives = 85/148 (57%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIK 133
S GY +V++ A +A++++N LN + + + + R + GA N++IK
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 109
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
N + +D+++L + FS FG LS KV D G+S+G+GFV ++ E A A++++NG +
Sbjct: 110 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 169
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNV 221
+ K +FVG +K ER++ K +F +
Sbjct: 170 SGKIIFVGRAQKKVERQAEL-KRKFEQL 196
Score = 135 (52.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD +S G+G+V+Y +
Sbjct: 100 AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 156
Query: 94 ATRALDELNFTPLNGKPI 111
A +A++E+N ++GK I
Sbjct: 157 ANKAVEEMNGKEISGKII 174
Score = 44 (20.5 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 151 FGNILSCK 158
FGNILSCK
Sbjct: 2 FGNILSCK 9
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 73/112 (65%), Positives = 90/112 (80%)
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
N+ +A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+D
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 61
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
TFS FGNILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++V
Sbjct: 62 TFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 50/123 (40%), Positives = 70/123 (56%)
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
NF P DA R+++ +N FD V K K R M + + SL+++ G N+
Sbjct: 2 NFQQPADAERALDTMN---FD-----VIKG--KPIRIMW--SQRDPSLRKSG---VG-NV 45
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
++KNLD SI + L + FS FG I SCKV+ D NG S+G FV F T E A KA+ +MNG
Sbjct: 46 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 104
Query: 385 KMV 387
++
Sbjct: 105 MLL 107
Score = 131 (51.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDD 234
F A+ A+D +N ++ K + + +R+ + K+ NV++KNL ++
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 58
Query: 235 LKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
L F FG I S V+ D +G SK + FV+F+ + A +++E +NG +D++
Sbjct: 59 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRK 111
Score = 104 (41.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D S GY +V++ A +A+++
Sbjct: 44 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEK 101
Query: 101 LNFTPLNGKPI 111
+N LN + +
Sbjct: 102 MNGMLLNDRKV 112
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 72/106 (67%), Positives = 86/106 (81%)
Query: 77 TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
TRRSLGY YVN+ +A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLD
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
KSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 107
Score = 156 (60.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 48/121 (39%), Positives = 68/121 (56%)
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
+S + +VNF P DA R+++ +N FD V K K R M + + SL+++
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMN---FD-----VIKG--KPVRIMW--SQRDPSLRKSG 52
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
G N+++KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A
Sbjct: 53 ---VG-NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 107
Query: 377 K 377
+
Sbjct: 108 R 108
Score = 135 (52.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 34/109 (31%), Positives = 57/109 (52%)
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKN 225
+S GY +V F A+ A+D +N ++ K V + +R+ + K+ N+++KN
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKN 60
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
L ++ L F FG I S V+ D +G SK +GFV+F+ + A R
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 69/114 (60%), Positives = 87/114 (76%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DT
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 118
Score = 117 (46.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 28/112 (25%), Positives = 57/112 (50%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKS 109
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFS 370
+ +A + +LYV +L +++ L E FS G I S +V RD S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+A +AL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 257 (95.5 bits), Expect = 5.4e-33, Sum P(2) = 5.4e-33
Identities = 58/160 (36%), Positives = 88/160 (55%)
Query: 33 DARQFVS-TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R + T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RA++ LN L K I++ Y+ + K N++I L +S+ K + D FS F
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRSMTQKDVEDMFSRF 129
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ +V D + G SRG F++FD A+ AI NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 196 (74.1 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 49/160 (30%), Positives = 79/160 (49%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ L FS+ G + S K+ D + G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I+ LNG+ L K + V + R E D N+Y+ L + T+ D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSS-EVIKDA----NLYISGLPRSMTQKDVEDMFSRFGR 131
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ G S+ F+ FD +A ++ NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHK 171
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 51/199 (25%), Positives = 87/199 (43%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
E D N+ V L + T+D+L+ +F G + S ++RD G+ F +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNY 68
Query: 270 DDAARSVEALNGKKFDDKEWYVG-KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
A + A+N G + Q K +K + + E + NLY+
Sbjct: 69 VTAKDAERAINTLN--------GLRLQSK-----TIKVSYARPSSEV---IKDANLYISG 112
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMV 387
L S++ ++++FS FG I + +V+ D G+SRG F+ F EA +A+T NG
Sbjct: 113 LPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKP 172
Query: 388 V--SKPLYVALAQRKEERR 404
S+P+ V A + +
Sbjct: 173 PGSSEPITVKFAANPNQNK 191
Score = 141 (54.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 308 FEQSLKETA-DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+E + E D NL V L +++ D+L+ LFS G + S K++RD G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
FV + TA++A +A+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 125 (49.1 bits), Expect = 5.4e-33, Sum P(2) = 5.4e-33
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 36/106 (33%), Positives = 48/106 (45%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + P SG IFI NL + D L F F
Sbjct: 213 HQAQR----FRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPF 267
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV N E A AI LNG L DK
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 313
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 254 (94.5 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 57/160 (35%), Positives = 88/160 (55%)
Query: 33 DARQFVS-TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R + T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A
Sbjct: 20 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 79
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RA++ LN L K I++ Y+ + K N++I L +++ K + D FS F
Sbjct: 80 KDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRF 137
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ +V D + G SRG F++FD A+ AI NG
Sbjct: 138 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 203 (76.5 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ L FS+ G + S K+ D + G S GYGFV + + A+ A
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I+ LNG+ L K + V + R E D N+Y+ L T T+ D++ +F FG
Sbjct: 86 INTLNGLRLQSKTIKVS-YARPSS-EVIKDA----NLYISGLPRTMTQKDVEDMFSRFGR 139
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ G S+ F+ FD +A ++ + NG K
Sbjct: 140 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 179
Score = 141 (54.7 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 308 FEQSLKETA-DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+E + E D NL V L +++ D+L+ LFS G + S K++RD G S G G
Sbjct: 13 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 72
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
FV + TA++A +A+ +NG + SK + V+ A+ E
Sbjct: 73 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 109
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 50/199 (25%), Positives = 87/199 (43%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
E D N+ V L + T+D+L+ +F G + S ++RD G+ F +
Sbjct: 19 EDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNY 76
Query: 270 DDAARSVEALNGKKFDDKEWYVG-KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
A + A+N G + Q K +K + + E + NLY+
Sbjct: 77 VTAKDAERAINTLN--------GLRLQSK-----TIKVSYARPSSEV---IKDANLYISG 120
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMV 387
L +++ ++++FS FG I + +V+ D G+SRG F+ F EA +A+T NG
Sbjct: 121 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 180
Query: 388 V--SKPLYVALAQRKEERR 404
S+P+ V A + +
Sbjct: 181 PGSSEPITVKFAANPNQNK 199
Score = 125 (49.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 118 (46.6 bits), Expect = 6.7e-32, Sum P(2) = 6.7e-32
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 251 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 310
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 311 ASLNGYRLGDKILQVSFKTNKSHK 334
Score = 118 (46.6 bits), Expect = 0.00032, P = 0.00032
Identities = 36/106 (33%), Positives = 48/106 (45%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + P SG IFI NL + D L F F
Sbjct: 221 HQAQR----FRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPF 275
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV N E A AI LNG L DK
Sbjct: 276 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 321
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 254 (94.5 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 57/160 (35%), Positives = 88/160 (55%)
Query: 33 DARQFVS-TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R + T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RA++ LN L K I++ Y+ + K N++I L +++ K + D FS F
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRNMTQKDVEDMFSRF 129
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ +V D + G SRG F++FD A+ AI NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 198 (74.8 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
Identities = 49/160 (30%), Positives = 79/160 (49%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ L FS+ G + S K+ D + G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I+ LNG+ L K + V + R E D N+Y+ L T+ D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSS-EVIKDA----NLYISGLPRNMTQKDVEDMFSRFGR 131
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ G S+ F+ FD +A ++ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 141 (54.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 308 FEQSLKETA-DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+E + E D NL V L +++ D+L+ LFS G + S K++RD G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
FV + TA++A +A+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 50/199 (25%), Positives = 87/199 (43%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
E D N+ V L + T+D+L+ +F G + S ++RD G+ F +
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNY 68
Query: 270 DDAARSVEALNGKKFDDKEWYVG-KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
A + A+N G + Q K +K + + E + NLY+
Sbjct: 69 VTAKDAERAINTLN--------GLRLQSK-----TIKVSYARPSSEV---IKDANLYISG 112
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMV 387
L +++ ++++FS FG I + +V+ D G+SRG F+ F EA +A+T NG
Sbjct: 113 LPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKP 172
Query: 388 V--SKPLYVALAQRKEERR 404
S+P+ V A + +
Sbjct: 173 PGSSEPITVKFAANPNQNK 191
Score = 125 (49.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 6.7e-32, Sum P(2) = 6.7e-32
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 36/106 (33%), Positives = 48/106 (45%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + P SG IFI NL + D L F F
Sbjct: 213 HQAQR----FRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPF 267
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV N E A AI LNG L DK
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 313
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 253 (94.1 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 57/160 (35%), Positives = 87/160 (54%)
Query: 33 DARQFVS-TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R + T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RA+ LN L K I++ Y+ + K N++I L +++ K + D FS F
Sbjct: 72 KDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRF 129
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ +V D + G SRG F++FD A+ AI NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 204 (76.9 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ + L FS+ G + S K+ D + G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I LNG+ L K + V + R E D N+Y+ L T T+ D++ +F FG
Sbjct: 78 ISTLNGLRLQSKTIKVS-YARPSS-EVIKDA----NLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ G S+ F+ FD +A ++ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 308 FEQSLKETA-DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+E + E D NL V L +++ ++L+ LFS G + S K++RD G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
FV + TA++A +A++ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 125 (49.1 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 125 (49.1 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFST 371
+ +++ + NLY+ L +++ ++++FS FG I + +V+ D G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 372 AEEASKALTEMNGKMVV--SKPLYVALAQRKEERR 404
EA +A+T NG S+P+ V A + +
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 118 (46.6 bits), Expect = 9.0e-32, Sum P(2) = 9.0e-32
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 28/91 (30%), Positives = 44/91 (48%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
E D N+ V L + T+++L+ +F G + S ++RD G S +GFVN+
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
DA R++ LNG + K V A+ E
Sbjct: 71 AKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 117 (46.2 bits), Expect = 0.00039, P = 0.00039
Identities = 36/106 (33%), Positives = 48/106 (45%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + P SG IFI NL + D L F F
Sbjct: 213 HQAQR----FRFSPMGVDHMSGISGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPF 267
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV N E A AI LNG L DK
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 313
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 253 (94.1 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 57/160 (35%), Positives = 87/160 (54%)
Query: 33 DARQFVS-TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R + T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RA+ LN L K I++ Y+ + K N++I L +++ K + D FS F
Sbjct: 72 KDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRF 129
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ +V D + G SRG F++FD A+ AI NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 204 (76.9 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ + L FS+ G + S K+ D + G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I LNG+ L K + V + R E D N+Y+ L T T+ D++ +F FG
Sbjct: 78 ISTLNGLRLQSKTIKVS-YARPSS-EVIKDA----NLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ G S+ F+ FD +A ++ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 308 FEQSLKETA-DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+E + E D NL V L +++ ++L+ LFS G + S K++RD G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
FV + TA++A +A++ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 125 (49.1 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 125 (49.1 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFST 371
+ +++ + NLY+ L +++ ++++FS FG I + +V+ D G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 372 AEEASKALTEMNGKMVV--SKPLYVALAQRKEERR 404
EA +A+T NG S+P+ V A + +
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 118 (46.6 bits), Expect = 9.0e-32, Sum P(2) = 9.0e-32
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 28/91 (30%), Positives = 44/91 (48%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
E D N+ V L + T+++L+ +F G + S ++RD G S +GFVN+
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
DA R++ LNG + K V A+ E
Sbjct: 71 AKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 117 (46.2 bits), Expect = 0.00039, P = 0.00039
Identities = 36/106 (33%), Positives = 48/106 (45%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + P SG IFI NL + D L F F
Sbjct: 213 HQAQR----FRFSPMGVDHMSGISGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPF 267
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV N E A AI LNG L DK
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 313
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 252 (93.8 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 55/152 (36%), Positives = 85/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A +A RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ Y+ + K N++I L +++ K + D FS FG I++ +V
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG F++FD A+ AI NG
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 203 (76.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ L FS+ G + S K+ D + G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I+ LNG+ L K + V + R E D N+Y+ L T T+ D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSS-EVIKDA----NLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ G S+ F+ FD +A ++ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ D+L+ LFS G + S K++RD G S G GFV + TA++A +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 382 MNGKMVVSKPLYVALAQRKEE 402
+NG + SK + V+ A+ E
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 125 (49.1 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 125 (49.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFST 371
+ +++ + NLY+ L +++ ++++FS FG I + +V+ D G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 372 AEEASKALTEMNGKMVV--SKPLYVALAQRKEERR 404
EA +A+T NG S+P+ V A + +
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 119 (46.9 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+D+L+ +F G + S ++RD G S +GFVN+ DA R++
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 279 LNGKKFDDKEWYVGKAQKKYE 299
LNG + K V A+ E
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 118 (46.6 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 36/106 (33%), Positives = 48/106 (45%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + P SG IFI NL + D L F F
Sbjct: 213 HQAQR----FRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPF 267
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV N E A AI LNG L DK
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 313
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 253 (94.1 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 56/160 (35%), Positives = 88/160 (55%)
Query: 33 DARQFVS-TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
D R + T+L V L ++ +L LF+ +G++ S ++ RD SLGYG+VNY A
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RA++ LN L K I++ Y+ + K N++I L +++ K + D FS F
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSPF 129
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ +V D + G SRG F++FD A+ AI NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 205 (77.2 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 51/160 (31%), Positives = 81/160 (50%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ + L FS+ G I S K+ D + G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I+ LNG+ L K + V + R E D N+Y+ L T T+ D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSS-EVIKDA----NLYISGLPRTMTQKDVEDMFSPFGR 131
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ G S+ F+ FD +A ++ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 308 FEQSLKETA-DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+E + E D NL V L +++ ++L+ LFS G I S K++RD G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYG 64
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
FV + TA++A +A+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 124 (48.7 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFST 371
+ +++ + NLY+ L +++ ++++FS FG I + +V+ D G+SRG F+ F
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 372 AEEASKALTEMNGKMVV--SKPLYVALAQRKEERR 404
EA +A+T NG S+P+ V A + +
Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 122 (48.0 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++A+ ++ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 121 (47.7 bits), Expect = 4.4e-32, Sum P(2) = 4.4e-32
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEAS A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAI 302
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 36/106 (33%), Positives = 48/106 (45%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + P SG IFI NL + D L F F
Sbjct: 213 HQAQR----FRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPF 267
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV N E A AI LNG L DK
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDK 313
Score = 118 (46.6 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
E D N+ V L + T+++L+ +F G I S ++RD G S +GFVN+
Sbjct: 11 EDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVT 70
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
DA R++ LNG + K V A+ E
Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 69/111 (62%), Positives = 90/111 (81%)
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
ELK KFEQ +E +++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + +G S+
Sbjct: 2 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 60
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQRKEER+A L Q+ Q
Sbjct: 61 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 111
Score = 199 (75.1 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 45/105 (42%), Positives = 63/105 (60%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
KQER S N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FGFV
Sbjct: 11 KQERISRYQGV---NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 66
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q
Sbjct: 67 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 111
Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 80
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER K N Y++ ++
Sbjct: 81 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 114
Score = 124 (48.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 28/100 (28%), Positives = 57/100 (57%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 17 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 74
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 75 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 113
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 241 (89.9 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 54/152 (35%), Positives = 85/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A +A RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ S+ P+ N++I L +++ K + D F FG+I++ +V
Sbjct: 80 TLNGLRLQSKTIKV--SFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRV 137
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG F++FD A+ AI NG
Sbjct: 138 LVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 213 (80.0 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 53/160 (33%), Positives = 83/160 (51%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ L FS+ G + S K+ D + G S GYGFV + N + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I+ LNG+ L K + V F R E+ D N+Y+ L T T+ D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVS-FARPSS-ETIKDA----NLYISGLPRTMTQKDVEDMFLPFGH 131
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ A G S+ F+ FD +A ++ + NG K
Sbjct: 132 IINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 48/188 (25%), Positives = 82/188 (43%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+D+L+ +F G + S ++RD G+ F V L
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GF---------VNYL 69
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K D E + + +K F + ET + NLY+ L +++ ++
Sbjct: 70 NAK---DAERAINTLNGLRLQSKTIKVSFARPSSET---IKDANLYISGLPRTMTQKDVE 123
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVV--SKPLYVAL 396
++F FG I + +V+ D G+SRG F+ F EA +A+ NG S+P+ V
Sbjct: 124 DMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKF 183
Query: 397 AQRKEERR 404
A + +
Sbjct: 184 AANPNQSK 191
Score = 135 (52.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 308 FEQSLKETA-DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+E + + D NL V L +++ D+L+ LFS G + S K++RD G S G G
Sbjct: 5 YEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
FV + A++A +A+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE 101
Score = 127 (49.8 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 120 (47.3 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAF 369
S+ + G +++ NL + L ++F FG +T+ KV+RD N +G GFV
Sbjct: 233 SVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTM 292
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ EEA+ A+ +NG + K L V+ K +
Sbjct: 293 TNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 326
Score = 120 (47.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 37/110 (33%), Positives = 51/110 (46%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + S + SG IFI NL + D L F F
Sbjct: 213 HQAQR----FRFSPMGVDHMSSISSVNVASSASSG-WCIFIYNLGQDADEGILWQMFGPF 267
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
G + + KV D + + +G+GFV N E A AI LNG L DK + V
Sbjct: 268 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQV 317
Score = 40 (19.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRAL 98
VCRD R +L Y+ N + R+L
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSL 39
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 254 (94.5 bits), Expect = 4.2e-31, Sum P(2) = 4.2e-31
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 23 NG--IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
NG I+ NG D++ T+L V L ++ + LF +G++ S ++ RD T +S
Sbjct: 23 NGPVISTNGATDDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQS 78
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYG+VNY ++A +A++ LN L K I++ SY P+ N+++ L K++
Sbjct: 79 LGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMS 136
Query: 141 NKALHDTFSTFGNILSCKVATDSL--GQSRGYGFVQFDNEESAKSAIDKLNG 190
K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 137 QKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 223 (83.6 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 55/172 (31%), Positives = 93/172 (54%)
Query: 120 PTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFV 173
P I +GA N+ + L +++ + F + G I SCK+ D + GQS GYGFV
Sbjct: 25 PVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFV 84
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+ + A AI+ LNG+ L K + V R S+A R N+YV L +T ++
Sbjct: 85 NYVDPNDADKAINTLNGLKLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMSQK 138
Query: 234 DLKKIFGEFGIITSTAVMRD--ADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
D++++F ++G I ++ ++ D G S+ GF+ FD ++A +++ LNG+K
Sbjct: 139 DMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQK 190
Score = 163 (62.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 54/197 (27%), Positives = 92/197 (46%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG K K V A+ + + L +T + K+++ S
Sbjct: 99 LNGLKLQTKTIKVSYARPS-SASIRDANLYVSGLPKTMSQ--------KDMEQLFSQ--- 146
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVAL 396
+ T + V + GISRG GF+ F EA +A+ +NG+ + ++P+ V
Sbjct: 147 ---YGRIIT-SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 202
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA +Q
Sbjct: 203 ANNPSQKTG--QALLTQ 217
Score = 132 (51.5 bits), Expect = 4.2e-31, Sum P(2) = 4.2e-31
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++ +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K+++
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHK 358
Score = 119 (46.9 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 31/87 (35%), Positives = 43/87 (49%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+GAG IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 272 TGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 331
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQER 209
AI LNG L D+ + V KQ +
Sbjct: 332 MAIASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 116 (45.9 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 334
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K+ +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 98 (39.6 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/89 (29%), Positives = 51/89 (57%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNYNAAHEATRALD 99
+LYV L +++ + LF+Q G++++ R+ D T S G G++ ++ +EA A+
Sbjct: 125 NLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIK 184
Query: 100 ELNFT-PLNG-KPIRIMYSYRDPTIRKSG 126
LN PL +PI + ++ +P+ +K+G
Sbjct: 185 GLNGQKPLGAAEPITVKFA-NNPS-QKTG 211
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 252 (93.8 bits), Expect = 8.7e-31, Sum P(3) = 8.7e-31
Identities = 55/152 (36%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS FG I++ ++
Sbjct: 128 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRI 185
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 186 LVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 241 (89.9 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 72/227 (31%), Positives = 117/227 (51%)
Query: 67 VSVRVCRDLSTRRSLGYGYVNYN----AAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
++VR+C S RS + + AA E T+ + + T NG P + + P
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAME-TQLSNGPSCTSSNG-PNSVSNTCTSPVE 58
Query: 123 RKSGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDN 177
+G+ N+ + L +++ + L F + G I SCK+ D + GQS GYGFV +
Sbjct: 59 MPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYME 118
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ AI+ LNG+ L K + V R S+A R N+YV L +T T+ +L++
Sbjct: 119 PKDAEKAINTLNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQ 172
Query: 238 IFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F +FG IITS ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 173 LFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQK 219
Score = 135 (52.6 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 28/87 (32%), Positives = 52/87 (59%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NLYV L +++ +L++LFS+FG I + +++ D G+SRG GF+ F EA +A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKG 214
Query: 382 MNGKMV--VSKPLYVALAQRKEERRAR 406
+NG+ ++P+ V A ++ ++
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKSSQ 241
Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ ++LK LF G I SCK++RD G S G GFV + ++A KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 382 MNGKMVVSKPLYVALAQ 398
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 131 (51.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++LK +FG G I S ++RD G+S +GFVN+ +P DA +++
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 279 LNGKKFDDKEWYVGKAQ 295
LNG + K V A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 125 (49.1 bits), Expect = 8.7e-31, Sum P(3) = 8.7e-31
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E+ L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 113 (44.8 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL ++ L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAI 363
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 45 (20.9 bits), Expect = 8.7e-31, Sum P(3) = 8.7e-31
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S KS+ L+ + + + + GP L +Q + D N Y VK S T
Sbjct: 229 VKFANNPSQKSSQALLSHLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKRFSPMTI 286
Query: 232 E 232
+
Sbjct: 287 D 287
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 64/121 (52%), Positives = 90/121 (74%)
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 352 K 352
K
Sbjct: 122 K 122
Score = 218 (81.8 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 49/119 (41%), Positives = 71/119 (59%)
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
++ L D F FG LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++V
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 201 GPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITS 247
G +K ER++ + TR+ N+YVKNL + ++ L+K F FG ITS
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 120
Score = 195 (73.7 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++LK+LF +FG S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 395 ALAQRKEERRARLQAQFSQ 413
AQ+K ER+ L+ +F Q
Sbjct: 62 GRAQKKVERQTELKRKFEQ 80
Score = 156 (60.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 43/123 (34%), Positives = 64/123 (52%)
Query: 53 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112
D +L DLF + G +SV+V D S + S G+G+V++ +A +A+DE+N LNGK I
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60
Query: 113 IMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ + + D R G N+++KNLD ID++ L FS FG I
Sbjct: 61 VGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTIT 119
Query: 156 SCK 158
S K
Sbjct: 120 SAK 122
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 252 (93.8 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 55/152 (36%), Positives = 85/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A +A RA++
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ Y+ + K N++I L +++ K + D FS FG I++ +V
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRV 164
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG F++FD A+ AI NG
Sbjct: 165 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 203 (76.5 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ L FS+ G + S K+ D + G S GYGFV + + A+ A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I+ LNG+ L K + V + R E D N+Y+ L T T+ D++ +F FG
Sbjct: 105 INTLNGLRLQSKTIKVS-YARPSS-EVIKDA----NLYISGLPRTMTQKDVEDMFSRFGR 158
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ G S+ F+ FD +A ++ + NG K
Sbjct: 159 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 198
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ D+L+ LFS G + S K++RD G S G GFV + TA++A +A+
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 382 MNGKMVVSKPLYVALAQRKEE 402
+NG + SK + V+ A+ E
Sbjct: 108 LNGLRLQSKTIKVSYARPSSE 128
Score = 125 (49.1 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 125 (49.1 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFST 371
+ +++ + NLY+ L +++ ++++FS FG I + +V+ D G+SRG F+ F
Sbjct: 124 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 183
Query: 372 AEEASKALTEMNGKMVV--SKPLYVALAQRKEERR 404
EA +A+T NG S+P+ V A + +
Sbjct: 184 RSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 218
Score = 119 (46.9 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+D+L+ +F G + S ++RD G S +GFVN+ DA R++
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 279 LNGKKFDDKEWYVGKAQKKYE 299
LNG + K V A+ E
Sbjct: 108 LNGLRLQSKTIKVSYARPSSE 128
Score = 118 (46.6 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 270 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 329
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 330 ASLNGYRLGDKILQVSFKTNKSHK 353
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 36/106 (33%), Positives = 48/106 (45%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + P SG IFI NL + D L F F
Sbjct: 240 HQAQR----FRFSPMGVDHMSGLSGVNVPGNASSG-WCIFIYNLGQDADEGILWQMFGPF 294
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV N E A AI LNG L DK
Sbjct: 295 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 340
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 254 (94.5 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 57/171 (33%), Positives = 94/171 (54%)
Query: 23 NG--IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
NG + NG D++ T+L V L ++ + LF +G + S ++ RD T +S
Sbjct: 24 NGPLLGTNGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYG+VNY+ ++A +A++ LN L K I++ SY P+ N+++ L K++
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMS 137
Query: 141 NKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 138 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 226 (84.6 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ F + G+I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ +++++F ++G IIT
Sbjct: 100 LNGLKLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+D+ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 279 LNGKKFDDKEWYVGKAQ 295
LNG K K V A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 136 (52.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ D+ K LF G I SCK++RD G S G GFV +S +A KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 382 MNGKMVVSKPLYVALAQ 398
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NLYV L ++S ++++LFS++G I + +++ D G+SRG GF+ F EA +A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 382 MNGK--MVVSKPLYVALAQRKEER 403
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + ++ V K K+++
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 116 (45.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 115 (45.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+GAG IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQER 209
AI LNG L ++ + V KQ +
Sbjct: 340 MAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 103 (41.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L +++ ++ LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 101 LNFT-PLNG-KPIRIMYSYRDPTIRKSG 126
LN PL +PI + ++ +P+ +K+G
Sbjct: 186 LNGQKPLGAAEPITVKFA-NNPS-QKTG 211
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 254 (94.5 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 57/171 (33%), Positives = 94/171 (54%)
Query: 23 NG--IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
NG + NG D++ T+L V L ++ + LF +G + S ++ RD T +S
Sbjct: 24 NGPLLGTNGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYG+VNY+ ++A +A++ LN L K I++ SY P+ N+++ L K++
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMS 137
Query: 141 NKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 138 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 226 (84.6 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ F + G+I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ +++++F ++G IIT
Sbjct: 100 LNGLKLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+D+ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 279 LNGKKFDDKEWYVGKAQ 295
LNG K K V A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 136 (52.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ D+ K LF G I SCK++RD G S G GFV +S +A KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 382 MNGKMVVSKPLYVALAQ 398
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NLYV L ++S ++++LFS++G I + +++ D G+SRG GF+ F EA +A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 382 MNGK--MVVSKPLYVALAQRKEER 403
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + ++ V K K+++
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 116 (45.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 115 (45.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+GAG IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQER 209
AI LNG L ++ + V KQ +
Sbjct: 340 MAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 103 (41.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L +++ ++ LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 101 LNFT-PLNG-KPIRIMYSYRDPTIRKSG 126
LN PL +PI + ++ +P+ +K+G
Sbjct: 186 LNGQKPLGAAEPITVKFA-NNPS-QKTG 211
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 254 (94.5 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 57/171 (33%), Positives = 94/171 (54%)
Query: 23 NG--IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
NG + NG D++ T+L V L ++ + LF +G + S ++ RD T +S
Sbjct: 24 NGPLLGTNGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYG+VNY+ ++A +A++ LN L K I++ SY P+ N+++ L K++
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMS 137
Query: 141 NKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 138 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 226 (84.6 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ F + G+I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ +++++F ++G IIT
Sbjct: 100 LNGLKLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+D+ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 279 LNGKKFDDKEWYVGKAQ 295
LNG K K V A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 136 (52.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ D+ K LF G I SCK++RD G S G GFV +S +A KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 382 MNGKMVVSKPLYVALAQ 398
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NLYV L ++S ++++LFS++G I + +++ D G+SRG GF+ F EA +A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 382 MNGK--MVVSKPLYVALAQRKEER 403
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + ++ V K K+++
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 116 (45.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 115 (45.5 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 122 IRKSGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
+R G G IF+ NL D L F FG + + KV D + + +G+GFV N +
Sbjct: 277 VRGCGGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 336
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
A AI LNG L ++ + V KQ +
Sbjct: 337 EAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 103 (41.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L +++ ++ LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 101 LNFT-PLNG-KPIRIMYSYRDPTIRKSG 126
LN PL +PI + ++ +P+ +K+G
Sbjct: 186 LNGQKPLGAAEPITVKFA-NNPS-QKTG 211
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 254 (94.5 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 57/171 (33%), Positives = 94/171 (54%)
Query: 23 NG--IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
NG + NG D++ T+L V L ++ + LF +G + S ++ RD T +S
Sbjct: 24 NGPLLGTNGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYG+VNY+ ++A +A++ LN L K I++ SY P+ N+++ L K++
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMS 137
Query: 141 NKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 138 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 226 (84.6 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ F + G+I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ +++++F ++G IIT
Sbjct: 100 LNGLKLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 142 (55.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+D+ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 279 LNGKKFDDKEWYVGKAQ 295
LNG K K V A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 136 (52.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ D+ K LF G I SCK++RD G S G GFV +S +A KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 382 MNGKMVVSKPLYVALAQ 398
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 134 (52.2 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 30/94 (31%), Positives = 55/94 (58%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NLYV L ++S ++++LFS++G I + +++ D G+SRG GF+ F EA +A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 382 MNGK--MVVSKPLYVALAQRKEERRARLQAQFSQ 413
+NG+ + ++P+ V A ++ QA +Q
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQKTG--QALLTQ 217
Score = 128 (50.1 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++ +L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + ++ V K K+++
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
Score = 116 (45.9 bits), Expect = 5.4e-29, Sum P(2) = 5.4e-29
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+
Sbjct: 284 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 343
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K+ +
Sbjct: 344 ASLNGYRLGERVLQVSFKTSKQHK 367
Score = 115 (45.5 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+GAG IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 281 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 340
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQER 209
AI LNG L ++ + V KQ +
Sbjct: 341 MAIASLNGYRLGERVLQVSFKTSKQHK 367
Score = 103 (41.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L +++ ++ LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 101 LNFT-PLNG-KPIRIMYSYRDPTIRKSG 126
LN PL +PI + ++ +P+ +K+G
Sbjct: 186 LNGQKPLGAAEPITVKFA-NNPS-QKTG 211
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 252 (93.8 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 57/171 (33%), Positives = 94/171 (54%)
Query: 23 NG--IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
NG + NG D++ T+L V L ++ + LF +G + S ++ RD T +S
Sbjct: 24 NGPLLGTNGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYG+VNY+ ++A +A++ LN L K I++ SY P+ N+++ L K++
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMS 137
Query: 141 NKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 138 QKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 231 (86.4 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 53/157 (33%), Positives = 88/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ F + G+I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ +++++F ++G IIT
Sbjct: 100 LNGLKLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ A G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 157 (60.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 50/188 (26%), Positives = 92/188 (48%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+D+ K +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI-TGQSLGY-GFVNYSDPNDADKAI 97
Query: 280 NGKKFDDKEWYVG-KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
N G K Q K +K + + ++ NLYV L ++S ++
Sbjct: 98 NTLN--------GLKLQTK-----TIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEM 141
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395
++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ + ++P+ V
Sbjct: 142 EQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVK 201
Query: 396 LAQRKEER 403
A ++
Sbjct: 202 FANNPSQK 209
Score = 128 (50.1 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + ++ V K K+++
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 116 (45.9 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 115 (45.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+GAG IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQER 209
AI LNG L ++ + V KQ +
Sbjct: 340 MAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 107 (42.7 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 26/88 (29%), Positives = 52/88 (59%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L +++ ++ LF+Q G++++ R+ D +T S G G++ ++ EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 101 LNFT-PLNG-KPIRIMYSYRDPTIRKSG 126
LN PL +PI + ++ +P+ +K+G
Sbjct: 186 LNGQKPLGAAEPITVKFA-NNPS-QKTG 211
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 252 (93.8 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 57/171 (33%), Positives = 94/171 (54%)
Query: 23 NG--IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
NG + NG D++ T+L V L ++ + LF +G + S ++ RD T +S
Sbjct: 24 NGPLLGTNGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYG+VNY+ ++A +A++ LN L K I++ SY P+ N+++ L K++
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMS 137
Query: 141 NKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 138 QKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 231 (86.4 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 53/157 (33%), Positives = 88/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ F + G+I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ +++++F ++G IIT
Sbjct: 100 LNGLKLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ A G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 157 (60.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 50/188 (26%), Positives = 92/188 (48%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+D+ K +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI-TGQSLGY-GFVNYSDPNDADKAI 97
Query: 280 NGKKFDDKEWYVG-KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
N G K Q K +K + + ++ NLYV L ++S ++
Sbjct: 98 NTLN--------GLKLQTK-----TIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEM 141
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395
++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ + ++P+ V
Sbjct: 142 EQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVK 201
Query: 396 LAQRKEER 403
A ++
Sbjct: 202 FANNPSQK 209
Score = 128 (50.1 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + ++ V K K+++
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 116 (45.9 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 115 (45.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+GAG IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQER 209
AI LNG L ++ + V KQ +
Sbjct: 340 MAIASLNGYRLGERVLQVSFKTSKQHK 366
Score = 107 (42.7 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 26/88 (29%), Positives = 52/88 (59%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L +++ ++ LF+Q G++++ R+ D +T S G G++ ++ EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 101 LNFT-PLNG-KPIRIMYSYRDPTIRKSG 126
LN PL +PI + ++ +P+ +K+G
Sbjct: 186 LNGQKPLGAAEPITVKFA-NNPS-QKTG 211
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 244 (91.0 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 31 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 234 (87.4 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 100 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 97
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 98 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 142
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 202
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 203 ANNPSQKSS--QALLSQ 217
Score = 126 (49.4 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 111 (44.1 bits), Expect = 6.0e-28, Sum P(3) = 6.0e-28
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 109 (43.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 345
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 346 MAIASLNGYRLGDR 359
Score = 104 (41.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 186 LNGQKPSGATEPITVKFA-NNPSQKSSQA 213
Score = 40 (19.1 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNL 226
V+F N S KS+ L+ + + + + GP L Q + D N Y VK L
Sbjct: 200 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRL 252
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 244 (91.0 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 31 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 234 (87.4 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 100 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 97
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 98 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 142
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 202
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 203 ANNPSQKSS--QALLSQ 217
Score = 126 (49.4 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 111 (44.1 bits), Expect = 6.0e-28, Sum P(3) = 6.0e-28
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 109 (43.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 345
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 346 MAIASLNGYRLGDR 359
Score = 104 (41.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 186 LNGQKPSGATEPITVKFA-NNPSQKSSQA 213
Score = 40 (19.1 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNL 226
V+F N S KS+ L+ + + + + GP L Q + D N Y VK L
Sbjct: 200 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRL 252
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 245 (91.3 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 236 (88.1 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 55/157 (35%), Positives = 90/157 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 100 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 153 (58.9 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 97
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 98 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 142
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA SQ
Sbjct: 203 ANNPSQKTN--QAILSQ 217
Score = 126 (49.4 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 112 (44.5 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 262 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 321
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 322 ASLNGYRLGDRVLQVSFKTNKTHK 345
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 237 (88.5 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 54/152 (35%), Positives = 83/152 (54%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A +A RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ S P+ N++I L +++ K + D F FG I++ +V
Sbjct: 80 TLNGLRLQSKTIKV--SVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRV 137
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG F++FD A+ AI NG
Sbjct: 138 LVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 214 (80.4 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 52/160 (32%), Positives = 83/160 (51%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ L FS+ G + S K+ D + G S GYGFV + N + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG- 243
I+ LNG+ L K + V + + ES D N+Y+ L T T+ D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVS--VARPSSESIKDA----NLYISGLPRTMTQKDVEDMFLPFGR 131
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
II S ++ A G S+ F+ FD +A ++ + NG K
Sbjct: 132 IINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
Score = 135 (52.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ D+L+ LFS G + S K++RD G S G GFV + A++A +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80
Query: 382 MNGKMVVSKPLYVALAQRKEE 402
+NG + SK + V++A+ E
Sbjct: 81 LNGLRLQSKTIKVSVARPSSE 101
Score = 124 (48.7 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
Score = 122 (48.0 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 39/113 (34%), Positives = 52/113 (46%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN--IFIKNLDKSIDNKALHDTFS 149
H+A R F+P+ + M S + S + IFI NL + D L F
Sbjct: 213 HQAQR----FRFSPMG---VDHMSSISGVNVASSASSGWCIFIYNLGQDADEGILWQMFG 265
Query: 150 TFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK--QVF 199
FG + + KV D + + +G+GFV N E A AI LNG L DK QVF
Sbjct: 266 PFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVF 318
Score = 120 (47.3 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+D+L+ +F G + S ++RD G S +GFVN+ + DA R++
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80
Query: 279 LNGKKFDDKEWYVGKAQKKYE 299
LNG + K V A+ E
Sbjct: 81 LNGLRLQSKTIKVSVARPSSE 101
Score = 116 (45.9 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V K +
Sbjct: 303 ASLNGYRLGDKTLQVFFKTSKSHK 326
Score = 115 (45.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 25/95 (26%), Positives = 49/95 (51%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFST 371
+ +++ + NLY+ L +++ ++++F FG I + +V+ D G+SRG F+ F
Sbjct: 97 RPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDK 156
Query: 372 AEEASKALTEMNGKMVV--SKPLYVALAQRKEERR 404
EA +A+ NG S+P+ V A + +
Sbjct: 157 RSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 40 (19.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRAL 98
VCRD R +L Y+ N + R+L
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSL 39
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 244 (91.0 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 234 (87.4 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 107 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 104
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 105 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 149
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 210 ANNPSQKSS--QALLSQ 224
Score = 126 (49.4 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 111 (44.1 bits), Expect = 9.5e-28, Sum P(3) = 9.5e-28
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 353 MAIASLNGYRLGDR 366
Score = 104 (41.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 193 LNGQKPSGATEPITVKFA-NNPSQKSSQA 220
Score = 40 (19.1 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNL 226
V+F N S KS+ L+ + + + + GP L Q + D N Y VK L
Sbjct: 207 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRL 259
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 244 (91.0 bits), Expect = 3.4e-29, Sum P(3) = 3.4e-29
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 42 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 101
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 102 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 159
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 160 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 234 (87.4 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 111 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 164
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 165 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 201
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 108
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 109 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 153
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 154 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 213
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 214 ANNPSQKSS--QALLSQ 228
Score = 126 (49.4 bits), Expect = 3.4e-29, Sum P(3) = 3.4e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
Score = 111 (44.1 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 300 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 359
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 360 ASLNGYRLGDRVLQVSFKTNKAHK 383
Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 297 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 356
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 357 MAIASLNGYRLGDR 370
Score = 104 (41.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 137 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 196
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 197 LNGQKPSGATEPITVKFA-NNPSQKSSQA 224
Score = 40 (19.1 bits), Expect = 3.4e-29, Sum P(3) = 3.4e-29
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNL 226
V+F N S KS+ L+ + + + + GP L Q + D N Y VK L
Sbjct: 211 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRL 263
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 244 (91.0 bits), Expect = 3.5e-29, Sum P(3) = 3.5e-29
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 161 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 234 (87.4 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 112 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 109
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 110 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 154
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 215 ANNPSQKSS--QALLSQ 229
Score = 126 (49.4 bits), Expect = 3.5e-29, Sum P(3) = 3.5e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 111 (44.1 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 357
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 358 MAIASLNGYRLGDR 371
Score = 104 (41.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 198 LNGQKPSGATEPITVKFA-NNPSQKSSQA 225
Score = 40 (19.1 bits), Expect = 3.5e-29, Sum P(3) = 3.5e-29
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNL 226
V+F N S KS+ L+ + + + + GP L Q + D N Y VK L
Sbjct: 212 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRL 264
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 274 (101.5 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 66/192 (34%), Positives = 108/192 (56%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV+VK+L ++DL+ +F ++G + S+ VM D G S +GFV F P ++A ++E L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+G ++ +K+ + + Y L K+ + NL++K L ++DD+L+
Sbjct: 170 DGYQYQNKK-LLCRLSNLYTN---LNSKYPSN-----------NLFIKPLPYDVTDDQLR 214
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK---PLYVAL 396
+LF FG I CKVM D NG S+ +GFV FS+ +ASKA+ MNG + PL V
Sbjct: 215 KLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKY 274
Query: 397 AQRKEERRARLQ 408
A ++++ +R Q
Sbjct: 275 ADTEQQKISRKQ 286
Score = 258 (95.9 bits), Expect = 3.8e-29, Sum P(2) = 3.8e-29
Identities = 56/163 (34%), Positives = 94/163 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+F+K+L +++ L + FS +G +LS KV D G S GYGFV+F + + + +AI++L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 189 NGMLLNDKQVFVGPFLRKQERESTAD-KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+G +K++ R + + K NN+++K L T+D L+K+F FG I
Sbjct: 170 DGYQYQNKKLLC----RLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIE 225
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
VM D +G+SK GFV F DA+++++A+NG + + Y
Sbjct: 226 CKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGY 268
Score = 233 (87.1 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 57/191 (29%), Positives = 100/191 (52%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+++V L ND L +LF++ G+V+S +V D S GYG+V +++ E+ A++
Sbjct: 109 TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMID-PKGNSYGYGFVRFSSPQESAAAIE 167
Query: 100 ELNFTPLNGKPI--RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
EL+ K + R+ Y + K + N+FIK L + + L F FG I+ C
Sbjct: 168 ELDGYQYQNKKLLCRLSNLYTNLN-SKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIEC 226
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF--VGPFLRKQERESTADK 215
KV D GQS+ GFV+F +E A AID +NG+ +N + V + ++++ + +
Sbjct: 227 KVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKISRKQ 286
Query: 216 TRFNNVYVKNL 226
+ +Y + +
Sbjct: 287 RKMQTIYQEKI 297
Score = 153 (58.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
KE + + N++VK+L +D+ L+ LFS++G + S KVM DP G S G GFV FS+
Sbjct: 100 KELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSP 159
Query: 373 EEASKALTEMNGKMVVSKPLYVALA 397
+E++ A+ E++G +K L L+
Sbjct: 160 QESAAAIEELDGYQYQNKKLLCRLS 184
Score = 139 (54.0 bits), Expect = 3.8e-29, Sum P(2) = 3.8e-29
Identities = 34/80 (42%), Positives = 47/80 (58%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTE 381
NL+V +L + D L +LFS+FG + S +V+ D + G ++G GFV F +EA K E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 382 MNGKMVVSKPLYVALAQRKE 401
MNG + SK L V L KE
Sbjct: 830 MNGFRIGSKFLKVKLKNEKE 849
Score = 134 (52.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 36/125 (28%), Positives = 65/125 (52%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
++ I +N G G + T+L+V L V+DS L+ LF+Q G++ SVRV D T +
Sbjct: 753 SSSITSNSGGG--KHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENK 810
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+V + EA + E+N + K +++ ++ SG + +N +K+ +
Sbjct: 811 GYGFVKFYQTDEALKCQKEMNGFRIGSKFLKVKLKNEKESMN-SGKSHHQHQNQNKNQNE 869
Query: 142 KALHD 146
+ L +
Sbjct: 870 QHLEE 874
Score = 126 (49.4 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 31/108 (28%), Positives = 56/108 (51%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDK 187
N+F+ +L +D+ L FS FG + S +V TD G+++GYGFV+F + A +
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYV-KNLSETTTEDD 234
+NG + K F+ L+ ++ + K+ + KN +E E++
Sbjct: 830 MNGFRIGSK--FLKVKLKNEKESMNSGKSHHQHQNQNKNQNEQHLEEE 875
Score = 119 (46.9 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 36/134 (26%), Positives = 70/134 (52%)
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
T N++V +L + L ++F +FG + S V+ D D G++K +GFV F D+A +
Sbjct: 766 TNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALK 825
Query: 275 SVEALNG----KKF------DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
+ +NG KF ++KE + + ++ + + K + EQ L+E ++ + NL
Sbjct: 826 CQKEMNGFRIGSKFLKVKLKNEKE-SMNSGKSHHQHQNQNKNQNEQHLEEEEEE-QTFNL 883
Query: 325 YVKNLDDSISDDKL 338
N+D + S+ ++
Sbjct: 884 PENNIDGNESNQEI 897
Score = 101 (40.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 22/84 (26%), Positives = 46/84 (54%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ S +L++ L V D QL LF G+++ +V D + + G+V +++ +A+
Sbjct: 193 KYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFA-GFVRFSSELDAS 251
Query: 96 RALDELNFTPLN---GKPIRIMYS 116
+A+D +N +N G P+ + Y+
Sbjct: 252 KAIDAMNGVRINKDSGYPLVVKYA 275
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 251 (93.4 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 55/152 (36%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L S+ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 127 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 185 LVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 241 (89.9 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 56/157 (35%), Positives = 90/157 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +S+ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 128 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 182 SRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 136 (52.9 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L ++ T+++LK +FG G I S ++RD G+S +GFVN+ DP DA +++
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 279 LNGKKFDDKEWYVGKAQ 295
LNG + K V A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 134 (52.2 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L S++ ++LK LF G I SCK++RD G S G GFV + ++A KA+
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 382 MNGKMVVSKPLYVALAQ 398
+NG + +K + V+ A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 131 (51.2 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 31/94 (32%), Positives = 54/94 (57%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NLYV L +++ +L++LFS++G I + +++ D G+SRG GF+ F EA +A+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKG 213
Query: 382 MNGKM--VVSKPLYVALAQRKEERRARLQAQFSQ 413
+NG+ ++P+ V A ++ QA SQ
Sbjct: 214 LNGQKPPAATEPITVKFANNPSQKTN--QAILSQ 245
Score = 126 (49.4 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 112 (44.5 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 242 (90.2 bits), Expect = 5.1e-29, Sum P(3) = 5.1e-29
Identities = 53/152 (34%), Positives = 85/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 106 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 234 (87.4 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 107 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 104
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 105 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 149
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 210 ANNPSQKSS--QALLSQ 224
Score = 133 (51.9 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDP 269
+T D ++ N+ V L + T+++ + +FG G I S ++RD G+S +GFVN+ DP
Sbjct: 39 ATTDDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQ 295
DA +++ LNG + K V A+
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYAR 123
Score = 126 (49.4 bits), Expect = 5.1e-29, Sum P(3) = 5.1e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 111 (44.1 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 353 MAIASLNGYRLGDR 366
Score = 104 (41.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 193 LNGQKPSGATEPITVKFA-NNPSQKSSQA 220
Score = 40 (19.1 bits), Expect = 5.1e-29, Sum P(3) = 5.1e-29
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNL 226
V+F N S KS+ L+ + + + + GP L Q + D N Y VK L
Sbjct: 207 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRL 259
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 244 (91.0 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 36 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 95
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 96 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 153
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 154 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 234 (87.4 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 105 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 158
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 159 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 195
Score = 149 (57.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 102
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 103 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 147
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 148 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 207
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 208 ANNPSQKSS--QALLSQ 222
Score = 126 (49.4 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
Score = 111 (44.1 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 267 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 326
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 327 ASLNGYRLGDRVLQVSFKTNKAHK 350
Score = 109 (43.4 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 264 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 323
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 324 MAIASLNGYRLGDR 337
Score = 104 (41.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 131 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 190
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 191 LNGQKPSGATEPITVKFA-NNPSQKSSQA 218
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
V+F N S KS+ L+ + + + + GP + +R
Sbjct: 205 VKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQR 241
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 242 (90.2 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 53/152 (34%), Positives = 85/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 111 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 234 (87.4 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 112 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 109
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 110 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 154
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 215 ANNPSQKSS--QALLSQ 229
Score = 133 (51.9 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDP 269
+T D ++ N+ V L + T+++ + +FG G I S ++RD G+S +GFVN+ DP
Sbjct: 44 ATTDDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQ 295
DA +++ LNG + K V A+
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYAR 128
Score = 126 (49.4 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 111 (44.1 bits), Expect = 2.4e-27, Sum P(3) = 2.4e-27
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 357
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 358 MAIASLNGYRLGDR 371
Score = 104 (41.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 198 LNGQKPSGATEPITVKFA-NNPSQKSSQA 225
Score = 40 (19.1 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNL 226
V+F N S KS+ L+ + + + + GP L Q + D N Y VK L
Sbjct: 212 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRL 264
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 245 (91.3 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 236 (88.1 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 55/157 (35%), Positives = 90/157 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 100 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 97
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 98 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 142
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA SQ
Sbjct: 203 ANNPSQKTN--QAILSQ 217
Score = 126 (49.4 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 112 (44.5 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 39 (18.8 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K+ L+ + + + + GP L +Q + D N Y VK S T
Sbjct: 200 VKFANNPSQKTNQAILSQLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKRFSPMTI 257
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 258 -DGMTSLAG 265
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 245 (91.3 bits), Expect = 7.4e-29, Sum P(2) = 7.4e-29
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 128 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 185
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 186 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 236 (88.1 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 55/157 (35%), Positives = 90/157 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 129 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 182
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 183 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Score = 153 (58.9 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 126
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 127 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 171
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 172 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 231
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA SQ
Sbjct: 232 ANNPSQKTN--QAILSQ 246
Score = 132 (51.5 bits), Expect = 7.4e-29, Sum P(2) = 7.4e-29
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 280 NGKKFDDKEWYVGKAQKKYE 299
NG + D+ V K K ++
Sbjct: 368 NGYRLGDRVLQVFKTNKTHK 387
Score = 107 (42.7 bits), Expect = 3.2e-27, Sum P(3) = 3.2e-27
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 380 TEMNGKMVVSKPLYV 394
+NG + + L V
Sbjct: 365 ASLNGYRLGDRVLQV 379
Score = 39 (18.8 bits), Expect = 3.2e-27, Sum P(3) = 3.2e-27
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K+ L+ + + + + GP L +Q + D N Y VK+ T
Sbjct: 229 VKFANNPSQKTNQAILSQLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKSRFSPMT 286
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 287 IDGMTSLAG 295
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 245 (91.3 bits), Expect = 7.7e-29, Sum P(2) = 7.7e-29
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 236 (88.1 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
Identities = 55/157 (35%), Positives = 90/157 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 100 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 97
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 98 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 142
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA SQ
Sbjct: 203 ANNPSQKTN--QAILSQ 217
Score = 126 (49.4 bits), Expect = 7.7e-29, Sum P(2) = 7.7e-29
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 112 (44.5 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 276 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 336 ASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 39 (18.8 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K+ L+ + + + + GP L +Q + D N Y VK+ T
Sbjct: 200 VKFANNPSQKTNQAILSQLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKSRFSPMT 257
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 258 IDGMTSLAG 266
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 273 (101.2 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 69/214 (32%), Positives = 106/214 (49%)
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
+E S K + ++NLS +D+LK+IF +FG + T + DGK K F FV F
Sbjct: 112 EEIPSPTKKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQF 171
Query: 267 DDPDDAARSVEALNGKKFDDK----EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
+A ++ A+N K D+ +W + + E K E++ + +KF+G+
Sbjct: 172 KCVSEAEKARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGI 229
Query: 323 N-------LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
L ++NL +D LK++FSEFGT+ K+ P+G RG FV F EA
Sbjct: 230 RKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEA 289
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
KALT MNGK + + + V A K++ A A
Sbjct: 290 GKALTAMNGKKIKDRQVAVDWAIAKDKYLATQSA 323
Score = 192 (72.6 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 60/260 (23%), Positives = 114/260 (43%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ I+NL + L FS FG +L K+ G+ RG+ FV F A A+ +N
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMN 297
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII--TS 247
G + D+QV V + K + +T + N+ +N++ E D K + I +
Sbjct: 298 GKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKKSISKKSD 357
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW----YVGKAQKKYEREME 303
++ D D DD ++ ++ + + DD + + + +
Sbjct: 358 SSEDEDDDDDDDDSSGSEMDDAENESQQSDDEDDDDDDDDDDDDDDNDDDDDDDDDDDDD 417
Query: 304 LKGKFEQSLKET---ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-G 359
+GK K +D EG ++++NL ++ L+E+ +FG ++ +V+ +P+ G
Sbjct: 418 SEGKTPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTG 477
Query: 360 ISRGSGFVAFSTAEEASKAL 379
+S+G F F + E A K +
Sbjct: 478 VSKGCAFAQFKSKEAAEKCI 497
Score = 147 (56.8 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 38/118 (32%), Positives = 56/118 (47%)
Query: 282 KKFDDKEWYVGKAQKKYE---REMELKG--KFEQSLKETADKFEGLNLYVKNLDDSISDD 336
KK DDK+ K E + G K + + K E L ++NL DD
Sbjct: 79 KKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKKKENGWLIIRNLSFKCEDD 138
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+LK++FS+FGT+ ++ P+G +G FV F EA KA MN K + +P+ V
Sbjct: 139 ELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEV 196
Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/121 (30%), Positives = 66/121 (54%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
++V+ L ET + + L +IF E G + + V+ D + K + FG+V F DDA R+++ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL-YVKNLDDSISDDKLK 339
K +DD++ +V A+KK + + K ++ K++ D E KN ++ S K K
Sbjct: 65 -KLYDDQKIFVTVAKKKLDDKKRKKNA--KTNKDSGDTEESQKSGETKNTEEIPSPTKKK 121
Query: 340 E 340
E
Sbjct: 122 E 122
Score = 134 (52.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
+ L+V+ L ++ S++ L E+FSE G + +C V+ D RG G+V FS ++A +AL E
Sbjct: 4 VTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKE 63
Query: 382 MNGKMVVSKPLYVALAQRKEERRAR 406
+ K+ + ++V +A++K + + R
Sbjct: 64 V--KLYDDQKIFVTVAKKKLDDKKR 86
Score = 117 (46.2 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 32/110 (29%), Positives = 56/110 (50%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
A +F++ L ++ N+ L + FS G + +C V D + RG+G+V F E+ A+ A+
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
++ L +D+++FV +K + DK R N N TE+ K
Sbjct: 63 EVK--LYDDQKIFVTVAKKKLD-----DKKRKKNAKT-NKDSGDTEESQK 104
Score = 104 (41.7 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
PT +K G + I+NL ++ L FS FG +L ++ G+ +G+ FVQF
Sbjct: 117 PTKKKEN-GWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVS 175
Query: 180 SAKSAIDKLNGMLLNDKQVFV 200
A+ A +N + D+ V V
Sbjct: 176 EAEKARAAMNRKAIRDRPVEV 196
Score = 98 (39.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 37/120 (30%), Positives = 54/120 (45%)
Query: 132 IKNLDKSID-NKALHDTFSTFGN----ILSCKVATDS-------LGQSRGYGFVQFDNEE 179
+ NL KS+D NK + S G I+ C++ D +GQS GYGFV+F E
Sbjct: 595 VHNLPKSVDKNKLFNLCVSAAGGKGVRIIECRIMYDKKPVKGQVMGQSLGYGFVEFQEHE 654
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKK 237
A A+ LN N+ +F GP R S D K + + ++N + D +K
Sbjct: 655 HAIQALRHLN----NNPDIF-GPQKRPIVEFSLEDGRKLKIKAIRLENSKKGLKHDRSQK 709
Score = 76 (31.8 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L+V L + ++ L ++F+++G + + V D ++ G+GYV ++ +A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCD-KEKKCRGFGYVTFSMEDDAQRAL 61
Query: 99 DEL 101
E+
Sbjct: 62 KEV 64
Score = 76 (31.8 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 15/72 (20%), Positives = 34/72 (47%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L + +L D +L +F++ G V+ R+ ++ G+ +V + EA +A +
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKK-GFAFVQFKCVSEAEKARAAM 184
Query: 102 NFTPLNGKPIRI 113
N + +P+ +
Sbjct: 185 NRKAIRDRPVEV 196
Score = 68 (29.0 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 32/109 (29%), Positives = 45/109 (41%)
Query: 299 EREMELKGKFEQ----SLKETADKFEGLNLYVKNLDDSISDDKLKEL-FSEFG----TIT 349
E ++ + +FE+ LK+ L V NL S+ +KL L S G I
Sbjct: 564 EADIAKRTRFEELKRARLKDINVYVSKTRLCVHNLPKSVDKNKLFNLCVSAAGGKGVRII 623
Query: 350 SCKVMRDPN-------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
C++M D G S G GFV F E A +AL +N + P
Sbjct: 624 ECRIMYDKKPVKGQVMGQSLGYGFVEFQEHEHAIQALRHLNNNPDIFGP 672
Score = 48 (22.0 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKK--FDDKEWYVGKAQKKYEREMELKG-KFEQSL 312
G+S +GFV F + + A +++ LN F ++ + + + R++++K + E S
Sbjct: 640 GQSLGYGFVEFQEHEHAIQALRHLNNNPDIFGPQKRPIVEFSLEDGRKLKIKAIRLENSK 699
Query: 313 K 313
K
Sbjct: 700 K 700
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 244 (91.0 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 234 (87.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 107 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 104
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 105 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 149
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 210 ANNPSQKSS--QALLSQ 224
Score = 126 (49.4 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 111 (44.1 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 109 (43.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 279 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 338
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 339 MAIASLNGYRLGDR 352
Score = 104 (41.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 193 LNGQKPSGATEPITVKFA-NNPSQKSSQA 220
Score = 46 (21.3 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S KS+ L+ + + + + GP L Q + D N Y VK S T
Sbjct: 207 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRFSPITI 264
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 265 -DGMTSLVG 272
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 244 (91.0 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 234 (87.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 107 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 104
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 105 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 149
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 210 ANNPSQKSS--QALLSQ 224
Score = 126 (49.4 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 111 (44.1 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 109 (43.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 279 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 338
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 339 MAIASLNGYRLGDR 352
Score = 104 (41.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 193 LNGQKPSGATEPITVKFA-NNPSQKSSQA 220
Score = 46 (21.3 bits), Expect = 8.5e-29, Sum P(3) = 8.5e-29
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S KS+ L+ + + + + GP L Q + D N Y VK S T
Sbjct: 207 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRFSPITI 264
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 265 -DGMTSLVG 272
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 240 (89.5 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 54/152 (35%), Positives = 84/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L +++ +L LF+ +G+V S ++ RD SLGYG+VNY ++A RA+
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N++I L K++ K + + F +G I++ +V
Sbjct: 94 TLNGLRLQSKTIKV--SYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRV 151
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D G SRG F++FD A+ AI LNG
Sbjct: 152 LVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 221 (82.9 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 51/157 (32%), Positives = 86/157 (54%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ L FS+ G + S K+ D + G S GYGFV + N A+ AI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V + R ++D + N+Y+ L +T T+ D++++FG +G II
Sbjct: 95 LNGLRLQSKTIKVS-YARP-----SSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIIN 148
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ A G S+ F+ FD +A +++ LNG+K
Sbjct: 149 SRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQK 185
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/111 (31%), Positives = 60/111 (54%)
Query: 291 VGKAQKKYEREM-ELKGKFEQSLK-ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
V + +Y +E+ ++ +E + E D NL V L ++S D+L+ LFS G +
Sbjct: 3 VRRGHVRYLKEVYDMSNGYEDHMADELIDS--KTNLIVNYLPQNMSQDELRSLFSSIGEV 60
Query: 349 TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
S K++RD G S G GFV + +A +A++ +NG + SK + V+ A+
Sbjct: 61 ESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYAR 111
Score = 124 (48.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + ++D+L+ +F G + S ++RD G S +GFVN+ +P+DA R++
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 279 LNGKKFDDKEWYVGKAQ 295
LNG + K V A+
Sbjct: 95 LNGLRLQSKTIKVSYAR 111
Score = 123 (48.4 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL + E L ++FG FG +T+ V+RD + K K FGFV ++AA ++ +L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 121 (47.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFST 371
+ ++D + NLY+ L +++ ++E+F +G I + +V+ D +G+SRG F+ F
Sbjct: 111 RPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDK 170
Query: 372 AEEASKALTEMNGK 385
EA A+ ++NG+
Sbjct: 171 RAEAEDAIKDLNGQ 184
Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
Identities = 36/106 (33%), Positives = 49/106 (46%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P++ + M P SG IFI NL + D L F F
Sbjct: 227 HQAQR----FRFSPMSVDHMSGMSGVNVPGNSSSG-WCIFIYNLGQDADEGILWQMFGPF 281
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
G + + KV D + + +G+GFV + E A AI LNG L DK
Sbjct: 282 GAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDK 327
Score = 115 (45.5 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G +++ NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+
Sbjct: 257 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAI 316
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + K L V+ K +
Sbjct: 317 ASLNGYRLGDKILQVSFKTSKSHK 340
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 67/117 (57%), Positives = 87/117 (74%)
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
QKK E + ELK KFEQ ++ +++G+NLYVKNLDDSI D++L++ FS FGTITS KVM
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSI-DERLRKQFSPFGTITSAKVM 59
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
+ G S+ GF+ FS+ EEA KA+ EMNGK+V +KPLYVALAQ KEE + L Q+
Sbjct: 60 ME-GGHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQY 115
Score = 158 (60.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 42/108 (38%), Positives = 60/108 (55%)
Query: 204 LRKQERESTADK-TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
L+ + + DK TR+ N+YVKNL ++ E L+K F FG ITS VM + G SK
Sbjct: 10 LKHKFEQMKQDKITRYQGVNLYVKNLDDSIDER-LRKQFSPFGTITSAKVMMEG-GHSKR 67
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
FGF+ F ++A ++V +NGK K YV AQ K E + L ++
Sbjct: 68 FGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQY 115
Score = 153 (58.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 38/114 (33%), Positives = 60/114 (52%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
+D R G N+++KNLD SID + L FS FG I S KV + G S+ +GF+ F +
Sbjct: 19 QDKITRYQGV-NLYVKNLDDSIDER-LRKQFSPFGTITSAKVMMEG-GHSKRFGFICFSS 75
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
E A A+ ++NG ++ K ++V K+E + T N Y+ ++ T
Sbjct: 76 HEEAFKAVMEMNGKIVATKPLYVALAQHKEECQ-----THLTNQYMHRMASVRT 124
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 244 (91.0 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 161 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 234 (87.4 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 112 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 109
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 110 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 154
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 215 ANNPSQKTS--QALLSQ 229
Score = 126 (49.4 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
Score = 111 (44.1 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKTHK 370
Score = 43 (20.2 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K++ L+ + + + + GP L Q + D N Y VK S T
Sbjct: 212 VKFANNPSQKTSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRFSPITI 269
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 270 -DGMTSLVG 277
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 242 (90.2 bits), Expect = 2.5e-28, Sum P(3) = 2.5e-28
Identities = 53/152 (34%), Positives = 85/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 111 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 168
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 169 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 234 (87.4 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 112 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 109
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 110 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 154
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 215 ANNPSQKSS--QALLSQ 229
Score = 133 (51.9 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDP 269
+T D ++ N+ V L + T+++ + +FG G I S ++RD G+S +GFVN+ DP
Sbjct: 44 ATTDDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQ 295
DA +++ LNG + K V A+
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYAR 128
Score = 126 (49.4 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
Score = 111 (44.1 bits), Expect = 2.5e-28, Sum P(3) = 2.5e-28
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKAHK 370
Score = 109 (43.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 284 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 343
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 344 MAIASLNGYRLGDR 357
Score = 104 (41.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 198 LNGQKPSGATEPITVKFA-NNPSQKSSQA 225
Score = 46 (21.3 bits), Expect = 2.5e-28, Sum P(3) = 2.5e-28
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S KS+ L+ + + + + GP L Q + D N Y VK S T
Sbjct: 212 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRFSPITI 269
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 270 -DGMTSLVG 277
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 244 (91.0 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G A T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 54 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 113
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 114 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 171
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 172 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 234 (87.4 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 123 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 176
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 177 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 213
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++ + +FG G I S ++RD + G+ F + D + +A+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 120
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 121 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 165
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 166 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 225
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ + QA SQ
Sbjct: 226 ANNPSQKSS--QALLSQ 240
Score = 126 (49.4 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
Score = 111 (44.1 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 298 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 357
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 358 ASLNGYRLGDRVLQVSFKTNKAHK 381
Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 295 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 354
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 355 MAIASLNGYRLGDR 368
Score = 104 (41.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 149 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 208
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN +G +PI + ++ +P+ + S A
Sbjct: 209 LNGQKPSGATEPITVKFA-NNPSQKSSQA 236
Score = 46 (21.3 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S KS+ L+ + + + + GP L Q + D N Y VK S T
Sbjct: 223 VKFANNPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRFSPITI 280
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 281 -DGMTSLVG 288
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 245 (91.3 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 127 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 185 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 236 (88.1 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 55/157 (35%), Positives = 90/157 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 128 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 182 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 153 (58.9 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 125
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 126 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 170
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 171 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 230
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA SQ
Sbjct: 231 ANNPSQKTN--QAILSQ 245
Score = 126 (49.4 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 112 (44.5 bits), Expect = 9.3e-28, Sum P(3) = 9.3e-28
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 303 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 362
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 363 ASLNGYRLGDRVLQVSFKTNKTHK 386
Score = 39 (18.8 bits), Expect = 9.3e-28, Sum P(3) = 9.3e-28
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K+ L+ + + + + GP L +Q + D N Y VK S T
Sbjct: 228 VKFANNPSQKTNQAILSQLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKRFSPMTI 285
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 286 -DGMTSLAG 293
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 245 (91.3 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 128 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 185
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 186 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 236 (88.1 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 55/157 (35%), Positives = 90/157 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 129 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 182
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 183 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Score = 153 (58.9 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 126
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 127 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 171
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 172 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 231
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA SQ
Sbjct: 232 ANNPSQKTN--QAILSQ 246
Score = 126 (49.4 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 112 (44.5 bits), Expect = 9.8e-28, Sum P(3) = 9.8e-28
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 39 (18.8 bits), Expect = 9.8e-28, Sum P(3) = 9.8e-28
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K+ L+ + + + + GP L +Q + D N Y VK S T
Sbjct: 229 VKFANNPSQKTNQAILSQLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKRFSPMTI 286
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 287 -DGMTSLAG 294
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 73/192 (38%), Positives = 110/192 (57%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + ++YVG LD +++ L++LF Q G VV+V V +D T YG+
Sbjct: 11 ANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
+ Y + +A A+ LN L+GKPIR+ + +D GA N+FI NLD +D K L+
Sbjct: 71 IEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLY 129
Query: 146 DTFSTFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
DTFS FG I S K+ D G SRG+GF+ +D+ E++ +AI+ + G L+++Q+ V
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 204 LRKQ---EREST 212
+K ER T
Sbjct: 190 YKKDTKGERHGT 201
Score = 196 (74.1 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 56/200 (28%), Positives = 102/200 (51%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ +A++ + VYV L +E+ L ++F + G + + V +D + +GF+ +
Sbjct: 16 QHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ LN K K V KA + K++ D G NL++ N
Sbjct: 76 EEDADYAIKVLNMIKLHGKPIRVNKASQD---------------KKSLDV--GANLFIGN 118
Query: 329 LDDSISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I S K+MRDP+ G SRG GF+++ + E + A+ M G+
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQY 178
Query: 387 VVSKPLYVALAQRKEERRAR 406
+ ++ + V+ A +K+ + R
Sbjct: 179 LSNRQITVSYAYKKDTKGER 198
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 238 (88.8 bits), Expect = 9.0e-28, Sum P(2) = 9.0e-28
Identities = 53/152 (34%), Positives = 85/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 230 (86.0 bits), Expect = 3.8e-25, Sum P(2) = 3.8e-25
Identities = 55/157 (35%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 100 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 52/197 (26%), Positives = 93/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 97
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 98 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 142
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA SQ
Sbjct: 203 ANNPSQKTN--QAILSQ 217
Score = 126 (49.4 bits), Expect = 9.0e-28, Sum P(2) = 9.0e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 112 (44.5 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 39 (18.8 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K+ L+ + + + + GP L +Q + D N Y VK S T
Sbjct: 200 VKFANNPSQKTNQAILSQLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKRFSPMTI 257
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 258 -DGMTSLAG 265
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 238 (88.8 bits), Expect = 9.0e-28, Sum P(2) = 9.0e-28
Identities = 53/152 (34%), Positives = 85/152 (55%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 230 (86.0 bits), Expect = 3.8e-25, Sum P(2) = 3.8e-25
Identities = 55/157 (35%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 100 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 146 (56.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 52/197 (26%), Positives = 93/197 (47%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 97
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 98 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 142
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202
Query: 397 AQRKEERRARLQAQFSQ 413
A ++ QA SQ
Sbjct: 203 ANNPSQKTN--QAILSQ 217
Score = 126 (49.4 bits), Expect = 9.0e-28, Sum P(2) = 9.0e-28
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 112 (44.5 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 39 (18.8 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K+ L+ + + + + GP L +Q + D N Y VK S T
Sbjct: 200 VKFANNPSQKTNQAILSQLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKRFSPMTI 257
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 258 -DGMTSLAG 265
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 243 (90.6 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 54/160 (33%), Positives = 87/160 (54%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G + T+L V L ++ + LF +G++ S ++ RD T +SLGYG+VNY
Sbjct: 80 GGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 139
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A +A++ LN L K I++ SY P+ N+++ L K++ K L FS +
Sbjct: 140 KDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 197
Query: 152 GNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 198 GRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 234 (87.4 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 54/157 (34%), Positives = 89/157 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 149 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 202
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
S ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 203 SRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQK 239
Score = 128 (50.1 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ + +FG G I S ++RD G+S +GFVN+ DP DA +++
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 279 LNGKKFDDKEWYVGKAQ 295
LNG + K V A+
Sbjct: 149 LNGLRLQTKTIKVSYAR 165
Score = 128 (50.1 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 31/94 (32%), Positives = 54/94 (57%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NLYV L +++ +L++LFS++G I + +++ D G SRG GF+ F EA +A+
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 382 MNGKMV--VSKPLYVALAQRKEERRARLQAQFSQ 413
+NG+ ++P+ V A ++ + QA SQ
Sbjct: 235 LNGQKPSGAAEPITVKFANNPSQKTS--QALLSQ 266
Score = 126 (49.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NLS + E L ++FG FG + + V+RD + K K FGFV + D+AA ++ +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
Score = 124 (48.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ ++ + LF G I SCK++RD G S G GFV + ++A KA+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 382 MNGKMVVSKPLYVALAQ 398
+NG + +K + V+ A+
Sbjct: 149 LNGLRLQTKTIKVSYAR 165
Score = 111 (44.1 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L +LF FG + + KV+RD N +G GFV + +EA+ A+
Sbjct: 324 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 383
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 384 ASLNGYRLGDRVLQVSFKTNKTHK 407
Score = 44 (20.5 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K++ L+ + + + + GP L Q + D N Y VK S T
Sbjct: 249 VKFANNPSQKTSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNL-LNMAYGVKRFSPITI 306
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 307 -DSMTSLVG 314
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 239 (89.2 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 54/153 (35%), Positives = 86/153 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR-RSLGYGYVNYNAAHEATRAL 98
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A+
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN L K I++ SY P+ N+++ L K++ K L FS +G I++ +
Sbjct: 126 NTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 183
Query: 159 VATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
+ D + G SRG GF++FD A+ AI LNG
Sbjct: 184 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 235 (87.8 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 55/158 (34%), Positives = 90/158 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL--GQSRGYGFVQFDNEESAKSAID 186
N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-II 245
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G II
Sbjct: 127 TLNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
TS ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 181 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 162 (62.1 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 50/197 (25%), Positives = 94/197 (47%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
ES + N+ V L + T+++LK +FG G I S ++RD + + G+ F +
Sbjct: 57 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGY-GFVNY 115
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D + +A+N + + Y R S+++ NLYV L
Sbjct: 116 IDPKDAEKAIN--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGL 160
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV- 387
+++ +L++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+
Sbjct: 161 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPP 220
Query: 388 -VSKPLYVALAQRKEER 403
++P+ V A ++
Sbjct: 221 GATEPITVKFANNPSQK 237
Score = 140 (54.3 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 32/90 (35%), Positives = 50/90 (55%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD--ADGKSKCFGFVN 265
E +T D N+ V L + T+++LK +FG G I S ++RD +G+S +GFVN
Sbjct: 57 ESNNTEDSK--TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVN 114
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+ DP DA +++ LNG + K V A+
Sbjct: 115 YIDPKDAEKAINTLNGLRLQTKTIKVSYAR 144
Score = 126 (49.4 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
Score = 111 (44.1 bits), Expect = 8.3e-26, Sum P(2) = 8.3e-26
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 365 ASLNGYRLGDRVLQVSFKTSKTHK 388
Score = 109 (43.4 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 125 SGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182
+G G IF+ NL D L F FG + + KV D + + +G+GFV N + A
Sbjct: 302 AGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 361
Query: 183 SAIDKLNGMLLNDK 196
AI LNG L D+
Sbjct: 362 MAIASLNGYRLGDR 375
Score = 96 (38.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 213
Query: 101 LNFTPLNG--KPIRIMYS 116
LN G +PI + ++
Sbjct: 214 LNGQKPPGATEPITVKFA 231
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 230 (86.0 bits), Expect = 8.9e-27, Sum P(2) = 8.9e-27
Identities = 56/169 (33%), Positives = 90/169 (53%)
Query: 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD----LSTRR----SLG 82
+GD T+L + L +++ +L LF+ +G+V S ++ RD +S SLG
Sbjct: 47 MGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLG 106
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK 142
YG+VNY +A RA++ LN L K I++ SY P+ N++I L K++ K
Sbjct: 107 YGFVNYVNPSDAERAINTLNGLRLQSKTIKV--SYARPSSDGIKDANLYISGLPKTMTQK 164
Query: 143 ALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
+ D F+ +G I++ ++ D G SRG F++FD A+ AI LNG
Sbjct: 165 NVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNG 213
Score = 203 (76.5 bits), Expect = 9.1e-23, Sum P(2) = 9.1e-23
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 117 YRDPT-IRKSGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD---------SLG 165
Y DP S A N+ I L +++ + L FS+ G + S K+ D +LG
Sbjct: 43 YEDPMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLG 102
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKN 225
S GYGFV + N A+ AI+ LNG+ L K + V + R ++D + N+Y+
Sbjct: 103 HSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVS-YARP-----SSDGIKDANLYISG 156
Query: 226 LSETTTEDDLKKIFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
L +T T+ +++ +F ++G II S ++ A G S+ F+ FD +A +++ LNG K
Sbjct: 157 LPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSK 215
Score = 130 (50.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 26/102 (25%), Positives = 59/102 (57%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFST 371
+ ++D + NLY+ L +++ ++++F+++G I + +++ D +G+SRG F+ F
Sbjct: 141 RPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDK 200
Query: 372 AEEASKALTEMNGKMV--VSKPLYVALAQR-KEERRARLQAQ 410
EA +A+ ++NG S+P+ V A + + ++L +Q
Sbjct: 201 RSEAEEAIKDLNGSKPSGASEPITVKFAANPNQSKNSQLLSQ 242
Score = 129 (50.5 bits), Expect = 8.9e-27, Sum P(2) = 8.9e-27
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC--FGFVNFDDPDDAARSVEA 278
++V NL + E L ++FG FG +T+ V+RD + SKC FGFV + ++AA ++ +
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFN-TSKCKGFGFVTMTNYEEAAMAISS 346
Query: 279 LNGKKFDDKEWYVG-KAQKKYE 299
LNG + DK V K+ K ++
Sbjct: 347 LNGYRLGDKVLQVSFKSSKSHK 368
Score = 124 (48.7 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS-RGSGFVAF 369
S+ + G ++V NL + L ++F FG +T+ KV+RD N +G GFV
Sbjct: 275 SMNVASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTM 334
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ EEA+ A++ +NG + K L V+ K +
Sbjct: 335 TNYEEAAMAISSLNGYRLGDKVLQVSFKSSKSHK 368
Score = 122 (48.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 110 PIRIMYSYRDPTIRKSGAGN--IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQ 166
P+ + +S + S + IF+ NL + D L F FG + + KV D + +
Sbjct: 266 PMSVDHSVSSMNVASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSK 325
Query: 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+G+GFV N E A AI LNG L DK
Sbjct: 326 CKGFGFVTMTNYEEAAMAISSLNGYRLGDK 355
Score = 101 (40.6 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD---------GKSKCFGFVNFDDPD 270
N+ + L + ++++L+ +F G + S ++RD G S +GFVN+ +P
Sbjct: 57 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPS 116
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQ 295
DA R++ LNG + K V A+
Sbjct: 117 DAERAINTLNGLRLQSKTIKVSYAR 141
Score = 98 (39.6 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 19/78 (24%), Positives = 44/78 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ L ++ + D+F Q G++++ R+ D ++ S G ++ ++ EA A+ +
Sbjct: 151 NLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKD 210
Query: 101 LNFTPLNG--KPIRIMYS 116
LN + +G +PI + ++
Sbjct: 211 LNGSKPSGASEPITVKFA 228
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 241 (89.9 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 54/168 (32%), Positives = 93/168 (55%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
A N +G+++ T+L + L + ++ LF +G++ S ++ RD T +SLGYG+
Sbjct: 32 APNVDIGESK----TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGF 87
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
VNY +A RA+ N L K I++ SY P+ + N+++ + KS+ L
Sbjct: 88 VNYVREEDALRAVSSFNGLRLQNKTIKV--SYARPSNDQIKGSNLYVSGIPKSMTLHELE 145
Query: 146 DTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGML 192
F FG I++ ++ +D++ G S+G GFV+FD ++ A AI LNG +
Sbjct: 146 SIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 230 (86.0 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 55/155 (35%), Positives = 85/155 (54%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ I L + + + + F++ G I SCK+ D + GQS GYGFV + EE A A+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
NG+ L +K + V + R D+ + +N+YV + ++ T +L+ IF FG IIT
Sbjct: 103 FNGLRLQNKTIKVS-YARPSN-----DQIKGSNLYVSGIPKSMTLHELESIFRPFGQIIT 156
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
S + + G SK GFV FD D+A +++ LNG
Sbjct: 157 SRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L+V +L +D+ L+ LF+Q G +V+V++ RDL T++ GY +V+ + EA A+ L
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDL-TQQCKGYAFVSMSNYTEAYNAMLSL 434
Query: 102 NFTPLNGKPIRIMYSYRDP 120
N T L GK +++++ P
Sbjct: 435 NGTNLAGKTLQVVFKSSTP 453
Score = 126 (49.4 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375
D+ +G NLYV + S++ +L+ +F FG I + +++ D G+S+G GFV F +EA
Sbjct: 123 DQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEA 182
Query: 376 SKALTEMNGKM 386
A+ +NG +
Sbjct: 183 DVAIKTLNGSI 193
Score = 123 (48.4 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
G L+V NL D L +LFS+FG I + K++RD +G FV+ S EA A+
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 381 EMNGKMVVSKPLYV 394
+NG + K L V
Sbjct: 433 SLNGTNLAGKTLQV 446
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL + L ++ ++++ LF+ G I SCK++RD G S G GFV + E+A +A++
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 382 MNGKMVVSKPLYVALAQRKEER 403
NG + +K + V+ A+ ++
Sbjct: 103 FNGLRLQNKTIKVSYARPSNDQ 124
Score = 110 (43.8 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+ + L + T+++++ +F G I S ++RD G+S +GFVN+ +DA R+V +
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKG 306
NG + +K V A+ + ++KG
Sbjct: 103 FNGLRLQNKTIKVSYARPSND---QIKG 127
Score = 93 (37.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
++V NLS T + L ++F +FG I + ++RD + K + FV+ + +A ++ +LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 281 GKKFDDK 287
G K
Sbjct: 436 GTNLAGK 442
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 224 (83.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 56/163 (34%), Positives = 87/163 (53%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-----------LSTRRSLGYGYVNY 88
T+L V L ++ +L LF+ +G+V S ++ RD LS SLGYG+VNY
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNY 79
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
A +A RA++ LN L K I++ S+ P+ N++I L +++ K + D F
Sbjct: 80 LNAKDAERAINTLNGLRLQSKTIKV--SFARPSSESIKDANLYISGLPRTMTQKDVEDMF 137
Query: 149 STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
FG+I++ +V D + G SRG F++FD A+ AI NG
Sbjct: 138 LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 195 (73.7 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 55/171 (32%), Positives = 83/171 (48%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD------------SLGQSRGYGFV 173
G N+ + L +++ L FS+ G + S K+ D S G S GYGFV
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFV 77
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+ N + A+ AI+ LNG+ L K + V F R ES D N+Y+ L T T+
Sbjct: 78 NYLNAKDAERAINTLNGLRLQSKTIKVS-FARPSS-ESIKDA----NLYISGLPRTMTQK 131
Query: 234 DLKKIFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
D++ +F FG II S ++ A G S+ F+ FD +A ++ + NG K
Sbjct: 132 DVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 182
Score = 143 (55.4 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 48/193 (24%), Positives = 84/193 (43%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS---- 275
N+ V L + T+D+L+ +F G + S ++RD K GF S
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD-----KVAGFEMRSSSLSKGHSLGYG 75
Query: 276 -VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
V LN K D E + + +K F + +++ + NLY+ L +++
Sbjct: 76 FVNYLNAK---DAERAINTLNGLRLQSKTIKVSFA---RPSSESIKDANLYISGLPRTMT 129
Query: 335 DDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVV--SKP 391
++++F FG I + +V+ D G+SRG F+ F EA +A+ NG S+P
Sbjct: 130 QKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEP 189
Query: 392 LYVALAQRKEERR 404
+ V A + +
Sbjct: 190 ITVKFAANPNQNK 202
Score = 128 (50.1 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA ++ +L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + DK V K K ++
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 121 (47.7 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAF 369
S+ + G ++V NL + L ++F FG +T+ KV+RD N +G GFV
Sbjct: 244 SVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTM 303
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ EEA+ A+ +NG + K L V+ K +
Sbjct: 304 TNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 118 (46.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 36/110 (32%), Positives = 51/110 (46%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
H+A R F+P+ + + S + SG IF+ NL + D L F F
Sbjct: 224 HQAQR----FRFSPMGVDHMSSISSVNVASSATSG-WCIFVYNLGQDADEGILWQMFGPF 278
Query: 152 GNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
G + + KV D + + +G+GFV N E A AI LNG L DK + V
Sbjct: 279 GAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQV 328
Score = 115 (45.5 bits), Expect = 0.00069, P = 0.00069
Identities = 32/108 (29%), Positives = 53/108 (49%)
Query: 308 FEQSLKETA-DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP--------- 357
+E + + D NL V L +++ D+L+ LFS G + S K++RD
Sbjct: 5 YEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSS 64
Query: 358 ---NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
G S G GFV + A++A +A+ +NG + SK + V+ A+ E
Sbjct: 65 SLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE 112
Score = 40 (19.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRAL 98
VCRD R +L Y+ N + R+L
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSL 39
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 63/161 (39%), Positives = 98/161 (60%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++Y+G+LD V+DS +++L Q G++V+V + +D T+ GYG+V +N+ +A A
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KV 159
+N L GKPIR+ + D +F+ NLD + + L+DTFS FGN+++ KV
Sbjct: 74 MNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKV 133
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
A D S+GYGFV F + ES+ +AI +NG L +KQV V
Sbjct: 134 ARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSV 174
Score = 197 (74.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 53/188 (28%), Positives = 97/188 (51%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEAL 279
VY+ NL E ++ + ++ + G I + + +D +S + +GFV F+ +DA + +
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + K V KA ++ +E+ G L+V NLD +++ L
Sbjct: 75 NGIRLYGKPIRVNKASADKQKSVEI----------------GAELFVGNLDPMVTEQVLY 118
Query: 340 ELFSEFGTITSC-KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG + + KV RD + +S+G GFV+F+ E + A+ MNG+ +++K + V A
Sbjct: 119 DTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAY 178
Query: 399 RKEERRAR 406
+K+ + R
Sbjct: 179 KKDGKGER 186
Score = 124 (48.7 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ L+VG+LD V + LYD F++ G +V++ +V RD + S GYG+V++ +
Sbjct: 99 IGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARD-DSNLSKGYGFVSFADFESSDA 157
Query: 97 ALDELNFTPLNGKPIRIMYSYR 118
A+ +N L K + + Y+Y+
Sbjct: 158 AIANMNGQYLMNKQVSVQYAYK 179
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 306 (112.8 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 68/190 (35%), Positives = 110/190 (57%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKS---IDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ DS + GFV F++E++A++ I N K++ G K+ R +T+
Sbjct: 213 L--DS---RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 219 NNVYVKNLSE 228
+ + + + E
Sbjct: 268 SRLDAETIIE 277
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 74/294 (25%), Positives = 125/294 (42%)
Query: 105 PLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH-DTFSTFGNILSCKVATDS 163
PLN P+ + D R G I LD D ++ + T N++ T
Sbjct: 187 PLNN-PLLTTRVFYDTFSRY---GKILSCKLDSRKDIGFVYFEDEKTARNVIKMYNNTSF 242
Query: 164 LGQSRGYGFVQFDNE-------ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-TADK 215
G+ G + FD E E+ KS +D ++ +Q + ++ES
Sbjct: 243 FGKKILCG-IHFDKEVRSVPNFETQKSRLDAET--IIEKEQSLNEKHSKGNDKESKNIYS 299
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ N++++KNL TT DD+ F E G I S + +A + FV + + D+ ++
Sbjct: 300 SSQNSIFIKNLPTITTRDDILNFFSEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKA 358
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
++ N F K+ V +AQ K ER KF +S K + L+++NL +
Sbjct: 359 IKRYNNFYFRGKKLLVTRAQDKEER-----AKFIESQKIST-------LFLENLSAVCNK 406
Query: 336 DKLKELFSEFGTITSCKVMRD--PNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
+ LK L + I K+ D S SGF+ F E+A++ +N ++V
Sbjct: 407 EFLKYLCHQ-ENIRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFNFLNNRLV 459
Score = 147 (56.8 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 68/269 (25%), Positives = 119/269 (44%)
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE-RESTADKTRFNNVYVK 224
+S G+G++ F+++E A+ A+++LN +N K++ + P LR R++ F+N+ +
Sbjct: 130 KSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLN 189
Query: 225 NLSETT-----TEDDLKKIFG-------EFGII------TSTAVMRDADGKS----KCFG 262
N TT T KI + G + T+ V++ + S K
Sbjct: 190 NPLLTTRVFYDTFSRYGKILSCKLDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILC 249
Query: 263 FVNFDDPDDAARSVEALNGKKFD-DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
++FD RSV +K D E + K Q E+ KG ++S K +
Sbjct: 250 GIHFDKE---VRSVPNFETQKSRLDAETIIEKEQSLNEKHS--KGNDKES-KNIYSSSQN 303
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
++++KNL + D + FSE G I S + + + FV + + ++ KA+
Sbjct: 304 -SIFIKNLPTITTRDDILNFFSEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKR 361
Query: 382 MNGKMVVSKPLYVALAQRKEERRARLQAQ 410
N K L V AQ KEER +++Q
Sbjct: 362 YNNFYFRGKKLLVTRAQDKEERAKFIESQ 390
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 260 (96.6 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 66/166 (39%), Positives = 93/166 (56%)
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+ T A+ F+P PI + RD R+S G ++ N + D + DT + F
Sbjct: 16 DVTEAMLYEKFSPAG--PILSIRVCRDMITRRS-LGYAYV-NFQQPADAERALDTMN-FD 70
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I V D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 71 VIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 129
Query: 213 --ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
A F NVY+KN E ++ LK +FG+FG S VM D G
Sbjct: 130 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 208 (78.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 38/71 (53%), Positives = 51/71 (71%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 101 LNFTPLNGKPI 111
+NF + GKP+
Sbjct: 67 MNFDVIKGKPV 77
Score = 194 (73.4 bits), Expect = 9.7e-15, P = 9.7e-15
Identities = 52/168 (30%), Positives = 85/168 (50%)
Query: 192 LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
+L +K GP L + + YV E L + F +I V+
Sbjct: 21 MLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVV 78
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + + ERE EL +
Sbjct: 79 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR---- 133
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
A +F N+Y+KN + + D++LK+LF +FG S KVM D +G
Sbjct: 134 ----AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 127 (49.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIK 133
S GYG+V++ A RA++++N LN + + + + R + GA N++IK
Sbjct: 84 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 143
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLG 165
N + +D++ L D F FG LS KV TD G
Sbjct: 144 NFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 109 (43.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
F I V+ D NG S+G GFV F T E A +A+ +MNG ++ + ++V + ++ER
Sbjct: 69 FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 127
Query: 405 ARLQAQ 410
A L A+
Sbjct: 128 AELGAR 133
Score = 94 (38.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS +V D + + S GY +V F A+ A+D
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 188 LNGMLLNDKQV 198
+N ++ K V
Sbjct: 67 MNFDVIKGKPV 77
Score = 84 (34.6 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 279 LN 280
+N
Sbjct: 67 MN 68
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 205 (77.2 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 48/158 (30%), Positives = 82/158 (51%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ST L+VG + S N+ ++ +LF + + SV + ++ +T G +V+ + EA RA
Sbjct: 1 MSTKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRA 60
Query: 98 LDEL-NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+++L N G + Y D K A +F+ L +S + + + + F G +
Sbjct: 61 IEQLHNSKKFQGVLNNLQVKYADSEQEKL-ASKLFVGMLPRSYEEEQIRELFEPHGVVED 119
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
+ +S+G GF++FDN ESA SAI LNGM L+
Sbjct: 120 ICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLD 157
Score = 163 (62.4 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 38/158 (24%), Positives = 81/158 (51%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCK-VATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
+F+ + KS + + + + F+ NI S + + + +G FV + E A AI++L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRF-NNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+ N K+ F G Q + + +++ + + ++V L + E+ ++++F G++
Sbjct: 65 H----NSKK-FQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVED 119
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285
++R + +SK GF+ FD+ + A ++ LNG K D
Sbjct: 120 ICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLD 157
Score = 157 (60.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 51/201 (25%), Positives = 99/201 (49%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
++V + ++ E+++K +F I S +++++ + + FV+ ++A R++E L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ K + + Q KY EQ ++ A K L+V L S +++++
Sbjct: 65 HNSK--KFQGVLNNLQVKYADS-------EQ--EKLASK-----LFVGMLPRSYEEEQIR 108
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG-KMVVS-KPLYVALA 397
ELF G + ++R PN S+G GF+ F E A A+ +NG K+ S PL V A
Sbjct: 109 ELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFA 168
Query: 398 -----QRKEERRARLQAQFSQ 413
++K++++ ++Q Q Q
Sbjct: 169 DTEKDKKKKQKQQQIQIQMQQ 189
Score = 153 (58.9 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKA 378
+G NL+V N+ + SD+ L LF ++G + S KV D N G+S+G GFV++ A+ A
Sbjct: 401 QGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLA 460
Query: 379 LTEMNGKMVVSKPLYVALAQ 398
++ ++G+M+ K L V+L Q
Sbjct: 461 ISNLHGQMMAGKKLKVSLKQ 480
Score = 125 (49.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGF 172
M + ++ ++ G+ N+F+ N+ + L F +G ++S KV D + G S+G+GF
Sbjct: 390 MGNKKNQSVGPQGS-NLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGF 448
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFV 200
V +DN SA AI L+G ++ K++ V
Sbjct: 449 VSYDNPASANLAISNLHGQMMAGKKLKV 476
Score = 116 (45.9 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVE 277
+N++V N+ +++DL +F ++GI+ S V D + G SK FGFV++D+P A ++
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 278 ALNGKKFDDKEWYVGKAQ 295
L+G+ K+ V Q
Sbjct: 463 NLHGQMMAGKKLKVSLKQ 480
Score = 98 (39.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 24 GIANNGGV--GDARQF-VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
G+ NN V D+ Q +++ L+VG L S + Q+ +LF G V + + R ++ S
Sbjct: 72 GVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSE-S 130
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119
G G++ ++ A A+ LN L+G P ++ + D
Sbjct: 131 KGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFAD 169
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 291 (107.5 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 74/262 (28%), Positives = 139/262 (53%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NLD ++ + F+ G++ KV D G + Y FV+F + A A+ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--GSNDPYAFVEFSDHGQASQALQTMN 105
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LL D+++ V + +++S D TR +V+V +LS L++ F FG ++
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 250 VMRDADG-KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V+RD + KSK +GFV++ ++A R++E +NG+ + A +K + E +
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK-PGDQEKPSHY 224
Query: 309 -EQSLKETADKFEGLN--LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
E+S E ++ G N +YV N+ S+++D++++ F+ FG IT ++ + +G
Sbjct: 225 NEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK-----MQGYA 278
Query: 366 FVAFSTAEEASKALTEMNGKMV 387
FV F + A+KA+ +MN + V
Sbjct: 279 FVKFDNKDAAAKAIVQMNNQDV 300
Score = 273 (101.2 bits), Expect = 4.9e-22, P = 4.9e-22
Identities = 73/261 (27%), Positives = 136/261 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+LD +V + + LFNQ+G V +V D S Y +V ++ +A++AL
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQT 103
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNIL 155
+N L + +++ ++ +P ++S ++F+ +L +DN+ L + F FG++
Sbjct: 104 MNKRLLLDREMKVNWAV-EPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVS 162
Query: 156 SCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK---QERES 211
KV D+ +S+GYGFV + E A+ AI+++NG L + + RK QE+ S
Sbjct: 163 DAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPS 222
Query: 212 TADKTRFNNVYVKNLSETT----------TEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
++ ++ +Y + + T TED++++ F FG IT + K + +
Sbjct: 223 HYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEIRQGFASFGRITEVRIF-----KMQGY 277
Query: 262 GFVNFDDPDDAARSVEALNGK 282
FV FD+ D AA+++ +N +
Sbjct: 278 AFVKFDNKDAAAKAIVQMNNQ 298
Score = 230 (86.0 bits), Expect = 9.9e-17, P = 9.9e-17
Identities = 60/189 (31%), Positives = 102/189 (53%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+D+ R +YV NL T TED + +F + G +T T V+ DG + + FV F D A
Sbjct: 42 SDEPR--TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI--FDGSNDPYAFVEFSDHGQA 97
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+++++ +N + D+E V A + G+ +QS +T F +++V +L
Sbjct: 98 SQALQTMNKRLLLDREMKVNWAVEP--------GQ-QQSKIDTTRHF---HVFVGDLSSE 145
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ + KL+E F FG ++ KV+RD N S+G GFV++ EEA +A+ +MNG+ + +
Sbjct: 146 VDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRT 205
Query: 392 LYVALAQRK 400
+ A RK
Sbjct: 206 IRTNWATRK 214
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
E LYV NLD ++++D + LF++ G++T KV+ D G + FV FS +AS+AL
Sbjct: 44 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--GSNDPYAFVEFSDHGQASQAL 101
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARL 407
MN ++++ + + V A ++++++
Sbjct: 102 QTMNKRLLLDREMKVNWAVEPGQQQSKI 129
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 281 (104.0 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 67/199 (33%), Positives = 105/199 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++Y+G+LD V DS L++L Q G VV++ + RD G+G+ + + A
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KV 159
LN L GKPIR+ + +D + N+F+ NLD +D + L+DTFS G ++ +V
Sbjct: 72 LNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-PFLR--KQERESTADKT 216
A D G+S+GYGFV +D+ E+A +AI+ +N L +K + V F R K ER +
Sbjct: 132 ARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAER 191
Query: 217 RFNNVYVKNLSETTTEDDL 235
+ KN T + L
Sbjct: 192 KLAAAAKKNKVAVTPQSTL 210
Score = 177 (67.4 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 55/195 (28%), Positives = 92/195 (47%)
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS-KCFGFVNFDDPDDA 272
D+ + +Y+ NL E T+ L ++ + G + + + RD S FGF F D
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+ + LN K K V +A + +G + G NL+V NLD
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQD-------RG---------VNTLIGANLFVGNLDPL 109
Query: 333 ISDDKLKELFSEFGTITSC-KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ + L + FS G + +V RD NG S+G GFV++ + E A A+ MN + +++KP
Sbjct: 110 VDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKP 169
Query: 392 LYVALAQRKEERRAR 406
+ V+ A ++E + R
Sbjct: 170 ITVSYAFKREGKGER 184
Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ +L+VG+LD V++ LYD F+ +GQ+V +V RD RS GYG+V+Y++ A
Sbjct: 97 IGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADA 155
Query: 97 ALDELNFTPLNGKPIRIMYSYR 118
A++ +N L KPI + Y+++
Sbjct: 156 AIEAMNNQFLMNKPITVSYAFK 177
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 228 (85.3 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 55/174 (31%), Positives = 90/174 (51%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 82
N ANN + T+L V L +++ ++ LF G+V S ++ RD T +SLG
Sbjct: 95 NATANNNNNNEPDP--KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLG 152
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK 142
YG+VNY +A +A++ LN L K I++ S P+ N+++ L K++
Sbjct: 153 YGFVNYVKQEDAEKAINALNGLRLQNKTIKV--SIARPSSESIKGANLYVSGLPKNMTQS 210
Query: 143 ALHDTFSTFGNILSCKVATDSL------GQSRGYGFVQFDNEESAKSAIDKLNG 190
L FS +G I++ ++ D++ G S+G GF++FD A AI +LNG
Sbjct: 211 DLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 224 (83.9 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 53/160 (33%), Positives = 87/160 (54%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F +FG + SCK+ D + GQS GYGFV + +E A+ AI+
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LNG+ L +K + V + + ES N+YV L + T+ DL+ +F +G I +
Sbjct: 171 LNGLRLQNKTIKVS--IARPSSESIKGA----NLYVSGLPKNMTQSDLESLFSPYGKIIT 224
Query: 248 TAVMRD------ADGKSKCFGFVNFDDPDDAARSVEALNG 281
+ ++ D A G SK GF+ FD +A R+++ LNG
Sbjct: 225 SRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 156 (60.0 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 54/197 (27%), Positives = 92/197 (46%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L +T ++D+++ +F FG + S ++RD G+S +GFVN+ +DA +++ A
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGK--FEQSLKE--TADKFEGL-NLYVKNLDDSI 333
LNG + +K V A+ E +KG + L + T E L + Y K + I
Sbjct: 171 LNGLRLQNKTIKVSIARPSSE---SIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRI 227
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS--KP 391
D + E G+S+G GF+ F EA +A+ E+NG + +P
Sbjct: 228 LCDNIT---GEHAA-----------GLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEP 273
Query: 392 LYVALAQRKEERRARLQ 408
+ V A + +Q
Sbjct: 274 ITVKFANNPSSNKNSMQ 290
Score = 115 (45.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ T E+ L ++FG FG + S V+RD K K FGFV + ++A ++++L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 280 NG 281
NG
Sbjct: 423 NG 424
Score = 111 (44.1 bits), Expect = 6.4e-24, Sum P(2) = 6.4e-24
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL ++ L +LF FG + S KV+RD + +G GFV + EEA A+
Sbjct: 360 GWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAI 419
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + ++ L V+ K ++
Sbjct: 420 QSLNGYTLGNRVLQVSFKTNKNKQ 443
Score = 108 (43.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRR----SLGYGYVNYNAAHEAT 95
+LYV L ++ S L LF+ G++++ R+ C +++ S G G++ ++ EA
Sbjct: 197 NLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEAD 256
Query: 96 RALDELN-FTPLNG-KPIRIMYSYRDPTIRKS 125
RA+ ELN TP N +PI + ++ +P+ K+
Sbjct: 257 RAIKELNGTTPKNSTEPITVKFA-NNPSSNKN 287
Score = 108 (43.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 29/77 (37%), Positives = 37/77 (48%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
TI SG IF+ NL + L F FG + S KV D + +G+GFV N E
Sbjct: 355 TIASSG-WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYE 413
Query: 180 SAKSAIDKLNGMLLNDK 196
A AI LNG L ++
Sbjct: 414 EAVLAIQSLNGYTLGNR 430
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 288 (106.4 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 68/181 (37%), Positives = 101/181 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ +LD V++ L +LF Q G V +V + RD GYG+V Y +E A +
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN T L GK +R + +D GA N+FI NLD +D K L D FS+FG I++ KV
Sbjct: 81 LNMTKLFGKALRCNKATQDKRSFDVGA-NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM 139
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ---ERESTADKTR 217
+ S+G+GF+ +DN ES+ AI+ +N + +K+V + +K ER TA + R
Sbjct: 140 RNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGERHGTAAE-R 198
Query: 218 F 218
F
Sbjct: 199 F 199
Score = 211 (79.3 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 62/209 (29%), Positives = 108/209 (51%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
++ ++I NLD +D + L + F GN+ + + D + G GYGFV+++ E +
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN---NVYVKNLSETTTEDDLKKIF 239
A + +LN ++F G LR + +T DK F+ N+++ NL + E L IF
Sbjct: 76 YAAN-----ILNMTKLF-GKALRCNK--ATQDKRSFDVGANLFIGNLDDEVDEKMLFDIF 127
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I + VMR+ D SK GF+++D+ + + ++E +N + +K+ ++ A KK +
Sbjct: 128 SSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKK-D 186
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKN 328
+ E G + A+K LNLY N
Sbjct: 187 SKGERHGTAAERFI-AANK--ALNLYPLN 212
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 52/203 (25%), Positives = 97/203 (47%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGF 263
+ QE ++ +Y+ NL E+ L ++F + G + + + RD +G +GF
Sbjct: 6 KNQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGF 65
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
V ++ + + LN K K KA + K F+ G N
Sbjct: 66 VEYEYEYECEYAANILNMTKLFGKALRCNKATQD-------KRSFDV----------GAN 108
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L++ NLDD + + L ++FS FG I + KVMR+ + S+G GF+++ E + A+ MN
Sbjct: 109 LFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMN 168
Query: 384 GKMVVSKPLYVALAQRKEERRAR 406
+ + +K ++++ A +K+ + R
Sbjct: 169 NQFICNKKVHISYAFKKDSKGER 191
Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 27/92 (29%), Positives = 55/92 (59%)
Query: 28 NGGVGDARQF-VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N D R F V +L++G+LD V++ L+D+F+ GQ+++V+V R+ S G+G++
Sbjct: 94 NKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRN-EDDTSKGHGFI 152
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
+Y+ + A++ +N + K + I Y+++
Sbjct: 153 SYDNFESSDLAIENMNNQFICNKKVHISYAFK 184
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 288 (106.4 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 68/181 (37%), Positives = 101/181 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ +LD V++ L +LF Q G V +V + RD GYG+V Y +E A +
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN T L GK +R + +D GA N+FI NLD +D K L D FS+FG I++ KV
Sbjct: 81 LNMTKLFGKALRCNKATQDKRSFDVGA-NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM 139
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ---ERESTADKTR 217
+ S+G+GF+ +DN ES+ AI+ +N + +K+V + +K ER TA + R
Sbjct: 140 RNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGERHGTAAE-R 198
Query: 218 F 218
F
Sbjct: 199 F 199
Score = 211 (79.3 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 62/209 (29%), Positives = 108/209 (51%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
++ ++I NLD +D + L + F GN+ + + D + G GYGFV+++ E +
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN---NVYVKNLSETTTEDDLKKIF 239
A + +LN ++F G LR + +T DK F+ N+++ NL + E L IF
Sbjct: 76 YAAN-----ILNMTKLF-GKALRCNK--ATQDKRSFDVGANLFIGNLDDEVDEKMLFDIF 127
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I + VMR+ D SK GF+++D+ + + ++E +N + +K+ ++ A KK +
Sbjct: 128 SSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKK-D 186
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKN 328
+ E G + A+K LNLY N
Sbjct: 187 SKGERHGTAAERFI-AANK--ALNLYPLN 212
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 52/203 (25%), Positives = 97/203 (47%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGF 263
+ QE ++ +Y+ NL E+ L ++F + G + + + RD +G +GF
Sbjct: 6 KNQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGF 65
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
V ++ + + LN K K KA + K F+ G N
Sbjct: 66 VEYEYEYECEYAANILNMTKLFGKALRCNKATQD-------KRSFDV----------GAN 108
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L++ NLDD + + L ++FS FG I + KVMR+ + S+G GF+++ E + A+ MN
Sbjct: 109 LFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMN 168
Query: 384 GKMVVSKPLYVALAQRKEERRAR 406
+ + +K ++++ A +K+ + R
Sbjct: 169 NQFICNKKVHISYAFKKDSKGER 191
Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 27/92 (29%), Positives = 55/92 (59%)
Query: 28 NGGVGDARQF-VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N D R F V +L++G+LD V++ L+D+F+ GQ+++V+V R+ S G+G++
Sbjct: 94 NKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRN-EDDTSKGHGFI 152
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
+Y+ + A++ +N + K + I Y+++
Sbjct: 153 SYDNFESSDLAIENMNNQFICNKKVHISYAFK 184
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 277 (102.6 bits), Expect = 5.4e-23, P = 5.4e-23
Identities = 68/178 (38%), Positives = 101/178 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++YVG LD V++S L++L Q G VVSV + +D T G+G+V + +A A+
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KV 159
LN L GKPI++ + GA NIF+ NLD +D K L+DTFS FG IL K+
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKI 132
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-PFLR--KQERESTA 213
D G S+G+ F+ F + E++ +A++ +NG L ++ + V F R K ER TA
Sbjct: 133 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTA 190
Score = 186 (70.5 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 55/189 (29%), Positives = 94/189 (49%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV L E +E L ++ + G + S + +D + FGFV F +DA +++ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K K V KA +E+ M++ G N++V NLD + + L
Sbjct: 75 NMIKLYGKPIKVNKASA-HEKNMDV----------------GANIFVGNLDPEVDEKLLY 117
Query: 340 ELFSEFGTITSC-KVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ FS FG I K+MRD +G S+G F+ F++ E + AL MNG+ + ++ + V+ A
Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
Query: 398 QRKEERRAR 406
+++ + R
Sbjct: 178 FKRDSKGER 186
Score = 182 (69.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 53/181 (29%), Positives = 85/181 (46%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNE 178
P + ++ I++ LD+ + L + G ++S + D + +G+GFV+F E
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A AI LN + L K + V + E D N++V NL E L
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVN---KASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDT 119
Query: 239 FGEFGIITSTA-VMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
F FG+I +MRD D G SK F F+NF + + ++EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 297 K 297
+
Sbjct: 180 R 180
Score = 125 (49.1 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 27/102 (26%), Positives = 54/102 (52%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGY 85
N + V +++VG+LD V++ LYD F+ G ++ V ++ RD+ + S G+ +
Sbjct: 87 NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAF 146
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSY-RDPTIRKSG 126
+N+ + + AL+ +N L + I + Y++ RD + G
Sbjct: 147 INFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHG 188
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 277 (102.6 bits), Expect = 5.4e-23, P = 5.4e-23
Identities = 68/178 (38%), Positives = 101/178 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++YVG LD V++S L++L Q G VVSV + +D T G+G+V + +A A+
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KV 159
LN L GKPI++ + GA NIF+ NLD +D K L+DTFS FG IL K+
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKI 132
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-PFLR--KQERESTA 213
D G S+G+ F+ F + E++ +A++ +NG L ++ + V F R K ER TA
Sbjct: 133 MRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTA 190
Score = 186 (70.5 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 55/189 (29%), Positives = 94/189 (49%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV L E +E L ++ + G + S + +D + FGFV F +DA +++ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K K V KA +E+ M++ G N++V NLD + + L
Sbjct: 75 NMIKLYGKPIKVNKASA-HEKNMDV----------------GANIFVGNLDPEVDEKLLY 117
Query: 340 ELFSEFGTITSC-KVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ FS FG I K+MRD +G S+G F+ F++ E + AL MNG+ + ++ + V+ A
Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
Query: 398 QRKEERRAR 406
+++ + R
Sbjct: 178 FKRDSKGER 186
Score = 182 (69.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 53/181 (29%), Positives = 85/181 (46%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNE 178
P + ++ I++ LD+ + L + G ++S + D + +G+GFV+F E
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A AI LN + L K + V + E D N++V NL E L
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVN---KASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDT 119
Query: 239 FGEFGIITSTA-VMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
F FG+I +MRD D G SK F F+NF + + ++EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 297 K 297
+
Sbjct: 180 R 180
Score = 125 (49.1 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 27/102 (26%), Positives = 54/102 (52%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGY 85
N + V +++VG+LD V++ LYD F+ G ++ V ++ RD+ + S G+ +
Sbjct: 87 NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAF 146
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSY-RDPTIRKSG 126
+N+ + + AL+ +N L + I + Y++ RD + G
Sbjct: 147 INFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHG 188
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 281 (104.0 bits), Expect = 8.0e-23, P = 8.0e-23
Identities = 82/290 (28%), Positives = 148/290 (51%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGN--ILSCKVATDSL-GQSRGYGFVQFDNEESAKSAID 186
I++ +L +D L+ F++ I+S KV + G S GYGFV+F++ + A +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 187 KLNGMLL-NDKQVFVGPFLRKQERESTADKTRFNN-----VYVKNLSETTTEDDLKKIFG 240
+ NG + N Q PF ST +K NN ++V +L+ ++ L + F
Sbjct: 165 EFNGAPMPNTDQ----PFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 241 E-FGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
E + + + V+ DA+ G+SK +GFV F D ++ +++ +NG K + +G A +
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 280
Query: 299 EREMELKGKFEQSLKETADKFEGLN--LYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
+ +G + S T + + +N ++V LD S++D+ LK+ FSEFG I S K+
Sbjct: 281 TNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI--- 337
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
P G +G GFV F A +AL ++NG ++ + + ++ + ++ R
Sbjct: 338 PVG--KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 385
Score = 263 (97.6 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 77/265 (29%), Positives = 137/265 (51%)
Query: 41 SLYVGDLDLSVNDSQLYDLFN--QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++VGDL ++++ L F + ++VS++V R+ S GYG+V + + A + L
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVL 163
Query: 99 DELNFTPL--NGKPIRI---MYSYRDPTIRKSGAG-NIFIKNLDKSIDNKALHDTFST-F 151
E N P+ +P R+ +S + + +G +IF+ +L + + LH+TFS +
Sbjct: 164 QEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223
Query: 152 GNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL-RK--- 206
++ + KV D+ G+S+GYGFV+F +E A+ ++NG+ + + + +GP RK
Sbjct: 224 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 283
Query: 207 -QERESTADKTRFNN---------VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
Q++ F ++V L + T++DLK+ F EFG I S + G
Sbjct: 284 YQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVG 340
Query: 257 KSKCFGFVNFDDPDDAARSVEALNG 281
K C GFV F + +A ++E LNG
Sbjct: 341 KG-C-GFVQFVNRPNAEEALEKLNG 363
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 177 (67.4 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 47/179 (26%), Positives = 93/179 (51%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD--GK--SKCF 261
++E E + +++KNL+ +TTE+ LK +F + G++ S ++ + + G+ S F
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGF 776
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
GFV + P+ A ++++ L G D + V +++ + + K + K+T K
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSK--- 833
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKA 378
+ V+N+ +++ELFS FG + + ++ + G RG GFV F T ++A +A
Sbjct: 834 --ILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 170 (64.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 58/238 (24%), Positives = 110/238 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT--DSLGQ--SRGYGFVQFDNEESAKSAI 185
+FIKNL+ S + L FS G + SC ++ + G+ S G+GFV++ E A+ A+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 186 DKLNGMLLNDKQVFVG-------PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+L G +++ ++ V P L ++ K + + V+N+ + +++++
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQEL 851
Query: 239 FGEFGIITSTAVMRDADGKS--KCFGFVNFDDPDDAARSVEAL-NGKKFDDKEWYVGKAQ 295
F FG + + + + G + FGFV+F DA R+ +AL + + + A
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLVLEWAD 911
Query: 296 KKYEREMELKGKFEQSLKETADKFEGLNL--YVKNLDDSISDDKLKELFSEFGTITSC 351
+ + L+ K + E K + L ++ L+DS SD + + L GT C
Sbjct: 912 SEVSLQA-LRRKTAEHFHEPPKKKRSVVLDEILEQLEDSESDSEEQTLQLRAGTERGC 968
Score = 151 (58.2 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 41/164 (25%), Positives = 77/164 (46%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR---SLGYGYVNYNAAHEATRA 97
+L++ +L+ S + L +F++ G V S + + + S+G+G+V Y +A +A
Sbjct: 731 TLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKA 790
Query: 98 LDELNFTPLNGKPIRIMYSYR--DPTI---------RKSGAGNIFIKNLDKSIDNKALHD 146
L +L ++ + + S R P + RK I ++N+ D + + +
Sbjct: 791 LKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQE 850
Query: 147 TFSTFGNILSCKVATDSLGQS--RGYGFVQFDNEESAKSAIDKL 188
FSTFG + + ++ G RG+GFV F ++ AK A L
Sbjct: 851 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQAL 894
Score = 148 (57.2 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--G--ISRGS 364
E+ +E + G L++KNL+ S +++ LK +FS+ G + SC + + N G +S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGF 776
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
GFV + E+A KAL ++ G +V S L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISER 811
Score = 141 (54.7 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 39/133 (29%), Positives = 69/133 (51%)
Query: 190 GMLLNDKQVFVGPFL-RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
G L N + + G L +E E AD R ++++NL T+TE+DL+++F +FG ++
Sbjct: 378 GPLKNSAKPWQGRTLGENEEEEDLADSGR---LFIRNLPYTSTEEDLQRLFSKFGPLSEL 434
Query: 249 AVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKKYEREMELK 305
D+ K K F FV F P+ A R+ ++G+ F + +V +K+ + + +
Sbjct: 435 HYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQ 494
Query: 306 GKFEQSLKETADK 318
G + KE+ DK
Sbjct: 495 GSSYKKKKESKDK 507
Score = 127 (49.8 bits), Expect = 0.00015, P = 0.00015
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L VKNL + + +D+ ++LF+ FGT+T C + +G R GF+ F + EEA AL N
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFN 63
Query: 384 GKMV 387
+
Sbjct: 64 RSFI 67
Score = 107 (42.7 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 38/161 (23%), Positives = 77/161 (47%)
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSV----EALNGKK---FDDKEWYVGKAQKKYEREM 302
++R+A G + FV+F ++ +++ E + G+ F +K K K +
Sbjct: 327 IVRNAHGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAK- 385
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGIS 361
+G+ +E D + L+++NL + +++ L+ LFS+FG ++ D
Sbjct: 386 PWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKP 445
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
+G FV F E A +A E++G++ + L+V + K+E
Sbjct: 446 KGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKE 486
Score = 105 (42.0 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 58/266 (21%), Positives = 113/266 (42%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S L++ +L + + L LF++ G + + D T++ G+ +V + A RA
Sbjct: 404 SGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAY 463
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGA------GNIFIKNLD-KSIDNKALHDTFSTF 151
E++ G+ + ++ S TI+K + G+ + K + K N + ++T
Sbjct: 464 AEVDGQVFQGRMLHVLPS----TIKKEASEDTDTQGSSYKKKKESKDKANSSSSHNWNTL 519
Query: 152 GNILSCKVATDSLGQSRGYGFVQ-FDNEESAKSAIDKLNG--MLLNDKQVFV---GPFLR 205
+ D++ Q Q FD+E A+ G L+ + + F+ G L
Sbjct: 520 --FMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLLDNGVSLD 577
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
++ A++++ + VKNL T +L++ FG FG + V+ G + V
Sbjct: 578 SFS-QAAAERSK-TVILVKNLPAGTLVAELQETFGRFGSLGR--VLLPEGGIT---AIVE 630
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYV 291
F +P +A ++ L KF Y+
Sbjct: 631 FLEPLEARKAFRHLAYSKFHHTPLYL 656
Score = 102 (41.0 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ +KNL + F++FG + C + G+ R +GF+ F +EE A SA++ N
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFN 63
Query: 190 GMLLNDKQVFV 200
++ ++ V
Sbjct: 64 RSFIDTSRITV 74
Score = 64 (27.6 bits), Expect = 8.2e-19, Sum P(3) = 8.2e-19
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
L V +L + + + LF G + S++ +D R+ +G++ + + EA AL+
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEALSALN 60
Query: 100 ELNFTPLNGKPIRIMY--SYRDPT 121
N + ++ I + + S+ DPT
Sbjct: 61 HFNRSFIDTSRITVEFCKSFGDPT 84
Score = 56 (24.8 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
++ ++ ++ G GY FV F +EE K A+ K N + + + + R++ +T
Sbjct: 323 VAIRIVRNAHGNKTGYIFVDFRSEEEIKQAL-KCNREYMGGRYIEI---FREKNVPTTKG 378
Query: 215 --KTRFNNVYVKNLSETTTEDDL 235
K + L E E+DL
Sbjct: 379 PLKNSAKPWQGRTLGENEEEEDL 401
Score = 38 (18.4 bits), Expect = 3.8e-16, Sum P(3) = 3.8e-16
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 94 ATRALDELNFTPLNGK 109
AT A D L+ PL GK
Sbjct: 149 ATWANDALDIEPLKGK 164
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 276 (102.2 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G + + Q ++YVG LD V++ L++LF Q G VV+ + +D T + GYG+V +
Sbjct: 4 GPISERNQ--DAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A A+ +N L GKPIR+ + GA NIFI NLD ID K L+DTF
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTF 120
Query: 149 STFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S FG IL K+ D G S+GY F+ F + +++ +AI+ +NG L ++ + V +K
Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Query: 207 QER 209
+
Sbjct: 181 DSK 183
Score = 197 (74.4 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 55/189 (29%), Positives = 99/189 (52%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
VYV L E +E L ++F + G + +T + +D G+ + +GFV F +DA +++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K K V KA + + +++ G N+++ NLD I + L
Sbjct: 75 NMIKLYGKPIRVNKASA-HNKNLDV----------------GANIFIGNLDPEIDEKLLY 117
Query: 340 ELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ FS FG I K+MRDP+ G S+G F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 398 QRKEERRAR 406
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 193 (73.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 54/181 (29%), Positives = 88/181 (48%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNE 178
P ++ +++ LD+ + L + F G +++ + D + GQ +GYGFV+F +E
Sbjct: 5 PISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A AI +N + L K + V + D N+++ NL E L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVN---KASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDT 119
Query: 239 FGEFGIITSTA-VMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
F FG+I T +MRD D G SK + F+NF D + ++EA+NG+ ++ V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 297 K 297
K
Sbjct: 180 K 180
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 205 (77.2 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 42/117 (35%), Positives = 69/117 (58%)
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
L +SLGYG+VNY A +A +A++ LN L K I++ SY P+ N+++
Sbjct: 79 LQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKV--SYARPSSESIKGANLYVSG 136
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
L K++ L F++FG I++ ++ D++ G S+G GF++FD A+ AI +LNG
Sbjct: 137 LPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 192 (72.6 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 44/119 (36%), Positives = 70/119 (58%)
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224
GQS GYGFV + E A+ A++ LNG+ L +K + V + R +++ + N+YV
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVS-YARP-----SSESIKGANLYVS 135
Query: 225 NLSETTTEDDLKKIFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
L + ++ DL+ +F FG IITS + + G SK GF+ FD ++A R+++ LNGK
Sbjct: 136 GLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 167 (63.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 49/195 (25%), Positives = 98/195 (50%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ + D++R N+ V L +T T+++++ +F G + S ++RD G + +
Sbjct: 18 DGSNDESR-TNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALN 76
Query: 269 PD-DAARSVEA--LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
P +S+ +N + +D E V + +K + + +++ +G NLY
Sbjct: 77 PALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYA---RPSSESIKGANLY 133
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNG 384
V L ++S L+ +F+ FG I + +++ D +G+S+G GF+ F EA +A+ E+NG
Sbjct: 134 VSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Query: 385 KMV--VSKPLYVALA 397
K ++P+ V A
Sbjct: 194 KTPKGYAEPITVKFA 208
Score = 118 (46.6 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC--FGFVNFDDPDDAARSVEA 278
++V NL+ T E+ L ++FG FG + S V+RD SKC FGFV + D+A ++++
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQ-TSKCKGFGFVTMTNYDEAVVAIQS 333
Query: 279 LNG 281
LNG
Sbjct: 334 LNG 336
Score = 106 (42.4 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 40/158 (25%), Positives = 70/158 (44%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-LSTRRSL 81
NG AN G V + T+L V L ++ ++ LF+ +G++ S ++ RD +S L
Sbjct: 10 NGSAN-GSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVL 68
Query: 82 GYGYVNYNAAHEA-----------TRALD-ELNFTPLNGKPIR---IMYSYRDPTIRKSG 126
N A + RA D E LNG ++ I SY P+
Sbjct: 69 PASLTALNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIK 128
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL 164
N+++ L K++ L F++FG I++ ++ D++
Sbjct: 129 GANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNI 166
Score = 105 (42.0 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKAL 379
G ++V NL ++ L +LF FG + S KV+RD +G GFV + +EA A+
Sbjct: 272 GWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAI 331
Query: 380 TEMNGKMVVSKPLYVALAQRK 400
+NG + ++ L V+ K
Sbjct: 332 QSLNGYTLGNRVLQVSFKTNK 352
Score = 101 (40.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L +++ L +F G++++ R+ D + S G G++ ++ +EA RA+ E
Sbjct: 131 NLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQE 190
Query: 101 LNF-TPLN-GKPIRIMYS 116
LN TP +PI + ++
Sbjct: 191 LNGKTPKGYAEPITVKFA 208
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 276 (102.2 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G + + Q ++YVG LD V++ L++LF Q G VV+ + +D T + GYG+V +
Sbjct: 4 GPISERNQ--DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A A+ +N L GKPIR+ + GA NIFI NLD ID K L+DTF
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTF 120
Query: 149 STFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S FG IL K+ D G S+GY F+ F + +++ +AI+ +NG L ++ + V +K
Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Query: 207 QER 209
+
Sbjct: 181 DSK 183
Score = 198 (74.8 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 55/197 (27%), Positives = 103/197 (52%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
+++ + VYV L E +E L ++F + G + +T + +D G+ + +GFV F +D
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ +N K K V KA + + +++ G N+++ NLD
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASA-HNKNLDV----------------GANIFIGNLDP 109
Query: 332 SISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
I + L + FS FG I K+MRDP+ G S+G F+ F++ + + A+ MNG+ + +
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 390 KPLYVALAQRKEERRAR 406
+P+ V+ A +K+ + R
Sbjct: 170 RPITVSYAFKKDSKGER 186
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 276 (102.2 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G + + Q ++YVG LD V++ L++LF Q G VV+ + +D T + GYG+V +
Sbjct: 4 GPISERNQ--DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A A+ +N L GKPIR+ + GA NIFI NLD ID K L+DTF
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTF 120
Query: 149 STFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S FG IL K+ D G S+GY F+ F + +++ +AI+ +NG L ++ + V +K
Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Query: 207 QER 209
+
Sbjct: 181 DSK 183
Score = 198 (74.8 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 55/197 (27%), Positives = 103/197 (52%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
+++ + VYV L E +E L ++F + G + +T + +D G+ + +GFV F +D
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ +N K K V KA + + +++ G N+++ NLD
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASA-HNKNLDV----------------GANIFIGNLDP 109
Query: 332 SISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
I + L + FS FG I K+MRDP+ G S+G F+ F++ + + A+ MNG+ + +
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 390 KPLYVALAQRKEERRAR 406
+P+ V+ A +K+ + R
Sbjct: 170 RPITVSYAFKKDSKGER 186
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 276 (102.2 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G + + Q ++YVG LD V++ L++LF Q G VV+ + +D T + GYG+V +
Sbjct: 4 GPISERNQ--DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A A+ +N L GKPIR+ + GA NIFI NLD ID K L+DTF
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTF 120
Query: 149 STFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S FG IL K+ D G S+GY F+ F + +++ +AI+ +NG L ++ + V +K
Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Query: 207 QER 209
+
Sbjct: 181 DSK 183
Score = 198 (74.8 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 55/197 (27%), Positives = 103/197 (52%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
+++ + VYV L E +E L ++F + G + +T + +D G+ + +GFV F +D
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ +N K K V KA + + +++ G N+++ NLD
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASA-HNKNLDV----------------GANIFIGNLDP 109
Query: 332 SISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
I + L + FS FG I K+MRDP+ G S+G F+ F++ + + A+ MNG+ + +
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 390 KPLYVALAQRKEERRAR 406
+P+ V+ A +K+ + R
Sbjct: 170 RPITVSYAFKKDSKGER 186
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 276 (102.2 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G + + Q ++YVG LD V++ L++LF Q G VV+ + +D T + GYG+V +
Sbjct: 4 GPISERNQ--DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A A+ +N L GKPIR+ + GA NIFI NLD ID K L+DTF
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTF 120
Query: 149 STFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S FG IL K+ D G S+GY F+ F + +++ +AI+ +NG L ++ + V +K
Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Query: 207 QER 209
+
Sbjct: 181 DSK 183
Score = 198 (74.8 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 55/197 (27%), Positives = 103/197 (52%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
+++ + VYV L E +E L ++F + G + +T + +D G+ + +GFV F +D
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ +N K K V KA + + +++ G N+++ NLD
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASA-HNKNLDV----------------GANIFIGNLDP 109
Query: 332 SISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
I + L + FS FG I K+MRDP+ G S+G F+ F++ + + A+ MNG+ + +
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 390 KPLYVALAQRKEERRAR 406
+P+ V+ A +K+ + R
Sbjct: 170 RPITVSYAFKKDSKGER 186
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 276 (102.2 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G + + Q ++YVG LD V++ L++LF Q G VV+ + +D T + GYG+V +
Sbjct: 4 GPISERNQ--DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A A+ +N L GKPIR+ + GA NIFI NLD ID K L+DTF
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTF 120
Query: 149 STFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S FG IL K+ D G S+GY F+ F + +++ +AI+ +NG L ++ + V +K
Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Query: 207 QER 209
+
Sbjct: 181 DSK 183
Score = 198 (74.8 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 55/197 (27%), Positives = 103/197 (52%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
+++ + VYV L E +E L ++F + G + +T + +D G+ + +GFV F +D
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ +N K K V KA + + +++ G N+++ NLD
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASA-HNKNLDV----------------GANIFIGNLDP 109
Query: 332 SISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
I + L + FS FG I K+MRDP+ G S+G F+ F++ + + A+ MNG+ + +
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 390 KPLYVALAQRKEERRAR 406
+P+ V+ A +K+ + R
Sbjct: 170 RPITVSYAFKKDSKGER 186
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 276 (102.2 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G + + Q ++YVG LD V++ L++LF Q G VV+ + +D T + GYG+V +
Sbjct: 4 GPISERNQ--DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A A+ +N L GKPIR+ + GA NIFI NLD ID K L+DTF
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTF 120
Query: 149 STFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S FG IL K+ D G S+GY F+ F + +++ +AI+ +NG L ++ + V +K
Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Query: 207 QER 209
+
Sbjct: 181 DSK 183
Score = 198 (74.8 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 55/197 (27%), Positives = 103/197 (52%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
+++ + VYV L E +E L ++F + G + +T + +D G+ + +GFV F +D
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ +N K K V KA + + +++ G N+++ NLD
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASA-HNKNLDV----------------GANIFIGNLDP 109
Query: 332 SISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
I + L + FS FG I K+MRDP+ G S+G F+ F++ + + A+ MNG+ + +
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 390 KPLYVALAQRKEERRAR 406
+P+ V+ A +K+ + R
Sbjct: 170 RPITVSYAFKKDSKGER 186
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 276 (102.2 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G + + Q ++YVG LD V++ L++LF Q G VV+ + +D T + GYG+V +
Sbjct: 4 GPISERNQ--DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A A+ +N L GKPIR+ + GA NIFI NLD ID K L+DTF
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDTF 120
Query: 149 STFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
S FG IL K+ D G S+GY F+ F + +++ +AI+ +NG L ++ + V +K
Sbjct: 121 SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Query: 207 QER 209
+
Sbjct: 181 DSK 183
Score = 198 (74.8 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 55/197 (27%), Positives = 103/197 (52%)
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDD 271
+++ + VYV L E +E L ++F + G + +T + +D G+ + +GFV F +D
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +++ +N K K V KA + + +++ G N+++ NLD
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASA-HNKNLDV----------------GANIFIGNLDP 109
Query: 332 SISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
I + L + FS FG I K+MRDP+ G S+G F+ F++ + + A+ MNG+ + +
Sbjct: 110 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 169
Query: 390 KPLYVALAQRKEERRAR 406
+P+ V+ A +K+ + R
Sbjct: 170 RPITVSYAFKKDSKGER 186
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 276 (102.2 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 81/290 (27%), Positives = 151/290 (52%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGN--ILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
I++ +L +D L+ +F++ I+S KV + + G S GYGFV+F++ + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 187 KLNGMLL-NDKQVFVGPFLRKQERESTADKTRFNN-----VYVKNLSETTTEDDLKKIFG 240
+ NG + N Q PF ST +K NN ++V +LS +++ L + F
Sbjct: 163 EFNGTTMPNTDQ----PFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 241 E-FGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
E + + + V+ DA+ G+SK +GFV F D ++ +++ +NG K + +G A +
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 299 EREMELKGKFEQSLKETADKFEGLN--LYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
+ +G + + T + + +N ++V LD S++D+ LK+ F+EFG I S K+
Sbjct: 279 TNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI--- 335
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
P G +G GFV F A +AL ++NG ++ + + ++ + ++ R
Sbjct: 336 PVG--KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
Score = 264 (98.0 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 81/265 (30%), Positives = 139/265 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLF--NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++VGDL ++++ L F ++VSV+V R+ + S GYG+V + + A + L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 99 DELNFT--PLNGKPIRI---MYSYRDPTIRKSGAG-NIFIKNLDKSIDNKALHDTFST-F 151
E N T P +P R+ +S + + +G +IF+ +L + + LH+TFS +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 152 GNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL-RK--- 206
++ + KV D+ G+S+GYGFV+F +E A+ ++NG+ + + + +GP RK
Sbjct: 222 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 281
Query: 207 -QERES---TADKTR-----FNN-VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
Q++ TR N ++V L + T++DLK+ F EFG I S + G
Sbjct: 282 YQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVG 338
Query: 257 KSKCFGFVNFDDPDDAARSVEALNG 281
K C GFV F + +A ++E LNG
Sbjct: 339 KG-C-GFVQFVNRPNAEEALEKLNG 361
>TAIR|locus:2053679 [details] [associations]
symbol:AT2G15500 "AT2G15500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR eggNOG:COG0724
EMBL:AC006248 IPI:IPI00526210 PIR:G84529 RefSeq:NP_179152.1
UniGene:At.52752 ProteinModelPortal:Q9ZQG2 SMR:Q9ZQG2
EnsemblPlants:AT2G15500.1 GeneID:816042 KEGG:ath:AT2G15500
TAIR:At2g15500 Genevestigator:Q9ZQG2 Uniprot:Q9ZQG2
Length = 132
Score = 165 (63.1 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
+VE+L G FDDK+W V +AQKK EREMELK +EQSLKE ADKF+ N
Sbjct: 29 AVESLKGNTFDDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
Score = 87 (35.7 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 185 IDKLNGMLLNDKQVFVGPFLR 205
+ KL GMLLNDKQV+VGPFLR
Sbjct: 1 MSKLIGMLLNDKQVYVGPFLR 21
Score = 50 (22.7 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 10/10 (100%), Positives = 10/10 (100%)
Query: 362 RGSGFVAFST 371
RGSGFVAFST
Sbjct: 79 RGSGFVAFST 88
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 261 (96.9 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 63/168 (37%), Positives = 96/168 (57%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L + DLD V +S L +LF Q VV V + +D T++ G YV + ++ +A AL +
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL-SCKVA 160
F L K I+I +D GA N+FI NLD +D + LHDTFS FG I+ + KV
Sbjct: 75 KFVRLFNKEIKIKKENKDKV--DIGA-NLFIGNLDADVDERILHDTFSRFGTIIFTPKVM 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
D G S+G+ F+ FD+ E++ +AI+ +N L +K + V + RK++
Sbjct: 132 RDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISV-TYARKKD 178
Score = 179 (68.1 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 37/91 (40%), Positives = 57/91 (62%)
Query: 313 KETADKFE-GLNLYVKNLDDSISDDKLKELFSEFGTIT-SCKVMRDPNGISRGSGFVAFS 370
KE DK + G NL++ NLD + + L + FS FGTI + KVMRD NG+S+G F+ F
Sbjct: 88 KENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFD 147
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ E + A+ MN + + +KP+ V A++K+
Sbjct: 148 SFEASDAAIEAMNSQFLCNKPISVTYARKKD 178
Score = 167 (63.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 49/174 (28%), Positives = 84/174 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAIDKL 188
+ I++LD + L + F ++ + D L Q G +V+F + A+ A+ +
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IITS 247
+ L +K++ + K+E + D N+++ NL E L F FG II +
Sbjct: 75 KFVRLFNKEIKI-----KKENKDKVDIGA--NLFIGNLDADVDERILHDTFSRFGTIIFT 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
VMRD +G SK F F+NFD + + ++EA+N + +K V A+KK E
Sbjct: 128 PKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNE 181
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 23/91 (25%), Positives = 53/91 (58%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ +L++G+LD V++ L+D F++ G ++ + +V RD S G+ ++N+++ +
Sbjct: 96 IGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRD-ENGVSKGFAFINFDSFEASDA 154
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
A++ +N L KPI + Y+ + + + G+
Sbjct: 155 AIEAMNSQFLCNKPISVTYARKKDSNERHGS 185
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 193 (73.0 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 42/113 (37%), Positives = 65/113 (57%)
Query: 79 RSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKS 138
+SLGYG+VNY +A +A++ LN L K I++ SY P+ N+++ L K+
Sbjct: 118 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKT 175
Query: 139 IDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
+ K L FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 176 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Score = 183 (69.5 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 44/119 (36%), Positives = 70/119 (58%)
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKN 225
QS GYGFV + + + A+ AI+ LNG+ L K + V R S+A R N+YV
Sbjct: 118 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSG 171
Query: 226 LSETTTEDDLKKIFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
L +T T+ +L+++F ++G IITS ++ G S+ GF+ FD +A +++ LNG+K
Sbjct: 172 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 230
Score = 132 (51.5 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 32/94 (34%), Positives = 54/94 (57%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NLYV L +++ +L++LFS++G I + +++ D GISRG GF+ F EA +A+
Sbjct: 166 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 225
Query: 382 MNGKMV--VSKPLYVALAQRKEERRARLQAQFSQ 413
+NG+ ++P+ V A ++ QA SQ
Sbjct: 226 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQ 257
Score = 126 (49.4 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
++V NL+ E L ++FG FG +T+ V+RD + K K FGFV + D+AA ++ +L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 280 NGKKFDDKEWYVG-KAQKKYE 299
NG + D+ V K K ++
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 112 (44.5 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
G ++V NL + L ++F FG +T+ KV+RD N +G GFV + +EA+ A+
Sbjct: 316 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 375
Query: 380 TEMNGKMVVSKPLYVALAQRKEER 403
+NG + + L V+ K +
Sbjct: 376 ASLNGYRLGDRVLQVSFKTNKTHK 399
Score = 108 (43.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188
IF+ NL D L F FG + + KV D + + +G+GFV N + A AI L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 189 NGMLLNDK 196
NG L D+
Sbjct: 379 NGYRLGDR 386
Score = 97 (39.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ +L LF+Q G++++ R+ D T S G G++ ++ EA A+
Sbjct: 166 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 225
Query: 101 LNFTPLNG--KPIRIMYSYRDPTIRKSGA 127
LN G +PI + ++ +P+ + + A
Sbjct: 226 LNGQKPPGATEPITVKFA-NNPSQKTNQA 253
Score = 77 (32.2 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+F ++ + S ++ +S +GFVN+ DP DA +++ LNG + K V A+
Sbjct: 99 LFEKWRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 156
Score = 67 (28.6 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
N+ V L + T+++LK +FG G I S ++RD
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 83
Score = 58 (25.5 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL--GQSRGY 170
N+ + L +++ + L F + G I SCK+ D + Q R Y
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREY 93
Score = 58 (25.5 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T Y ++ E R LD
Sbjct: 49 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFRE-YFTDSSLFEKWRPLD 107
Score = 39 (18.8 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVY-VKNLSETTT 231
V+F N S K+ L+ + + + + GP L +Q + D N Y VK+ T
Sbjct: 240 VKFANNPSQKTNQAILSQLYQSPNRRYPGP-LAQQAQRFRLDNL-LNMAYGVKSRFSPMT 297
Query: 232 EDDLKKIFG 240
D + + G
Sbjct: 298 IDGMTSLAG 306
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 240 (89.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 64/183 (34%), Positives = 101/183 (55%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC--FGFVNFDDPDDAARSVEA 278
+YV L TED LK+IF G + S ++ D + SK +GFV FDDP A R+++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG++ E V A Y+ K ++T++ F +++V +L + ++D+ L
Sbjct: 152 LNGRRIHQSEIRVNWA---YQSNTANK-------EDTSNHF---HIFVGDLSNEVNDEVL 198
Query: 339 KELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ FS FG+++ +VM D G SRG GFVAF +A KALT M+G+ + S+ + A
Sbjct: 199 LQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWA 258
Query: 398 QRK 400
+K
Sbjct: 259 NQK 261
Score = 228 (85.3 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 51/163 (31%), Positives = 85/163 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS-TRRSLGYGYVNYNAAHEATRALD 99
+LYVG LD V + L +F G V+SV++ D + + YG+V ++ A RA+
Sbjct: 91 ALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQ 150
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILS 156
LN ++ IR+ ++Y+ T K N IF+ +L ++++ L FS FG++
Sbjct: 151 TLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 157 CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+V D G+SRGYGFV F A+ A+ ++G L + +
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Score = 194 (73.4 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 43/156 (27%), Positives = 85/156 (54%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRG--YGFVQFDNEESAKSAIDK 187
+++ LD + L F T G+++S K+ D S+G YGFV+FD+ +A+ A+
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LNG ++ ++ V + + + D + +++V +LS ++ L + F FG ++
Sbjct: 152 LNGRRIHQSEIRVN-WAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 248 TAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGK 282
VM D G+S+ +GFV F + DA +++ +++G+
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGE 246
Score = 123 (48.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL VND L F+ G V RV D+ T RS GYG+V + +A +AL +
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 102 NFTPLNGKPIRIMYSYR--DPTIRKSGA 127
+ L + IR ++ + P+I + A
Sbjct: 244 DGEWLGSRAIRCNWANQKGQPSISQQQA 271
Score = 89 (36.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
YV NL+ TT++D+ +F FG + T + D + F F+ D ++AA ++ LNG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Score = 87 (35.7 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
YV NL + + + LF FG + ++ D RG F+ T E A+ A+ ++NG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 385 KMVVSKPL 392
V +PL
Sbjct: 366 YNVNGRPL 373
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 208 (78.3 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 50/157 (31%), Positives = 88/157 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++GDL V+++ L F+Q G++VSV+V R+ T + GYG++ + + A R L
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 101 LNFTPLNGKPIRIMYSYRD-PTIRKSGAG---NIFIKNLDKSIDNKALHDTFST-FGNIL 155
N T + G + ++ + +K AG +IF+ +L + + L +TF + ++
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 156 SCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
KV TD S G+S+GYGFV+F E A+ ++NG+
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGL 181
Score = 147 (56.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 51/204 (25%), Positives = 95/204 (46%)
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPD 270
T ++ R +++ +L E+ L F + G + S V+R+ G+ + +GF+ F
Sbjct: 19 TLEEVR--TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHA 76
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK-GKFEQSLKETADKFEGLNLYVKNL 329
A R+++ NG + E L F K D +++V +L
Sbjct: 77 AAERTLQTYNGTQMPGTEL-----------TFRLNWASFGSGQK--VDAGPDHSIFVGDL 123
Query: 330 DDSISDDKLKELFS-EFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMV 387
++D L+E F + ++ KV+ DP+ G S+G GFV F+ E ++A+ EMNG
Sbjct: 124 APDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYC 183
Query: 388 VSKPLYVALAQRKEERRARLQAQF 411
++P+ ++ A K + +Q Q+
Sbjct: 184 STRPMRISAATPK--KNVGVQQQY 205
Score = 112 (44.5 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S++VGDL V D L + F V +V D ST RS GYG+V + E RA+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 100 ELNFTPLNGKPIRI 113
E+N + +P+RI
Sbjct: 177 EMNGLYCSTRPMRI 190
Score = 107 (42.7 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 35/148 (23%), Positives = 66/148 (44%)
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNG----------------KKFDDKEWYVGKAQKKYE 299
G+SK +GFV F + + R++ +NG K ++ YV KA
Sbjct: 155 GRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVT 214
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
+ + + + V NLD ++++++LK+ FS+ G + K+ P
Sbjct: 215 VPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI---P-- 269
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMV 387
++G G+V F T A +A+ M G+++
Sbjct: 270 ATKGYGYVQFKTRPSAEEAVQRMQGQVI 297
Score = 106 (42.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 24/96 (25%), Positives = 50/96 (52%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I + NLD+++ + L FS G ++ K+ ++GYG+VQF SA+ A+ ++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPA-----TKGYGYVQFKTRPSAEEAVQRMQ 293
Query: 190 GMLLNDKQVFVGPFLRKQERE---STADKTRFNNVY 222
G ++ + V + + + ++ + AD ++N Y
Sbjct: 294 GQVIGQQAVRIS-WSKNPGQDGWVTQADPNQWNGYY 328
Score = 74 (31.1 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+ V NL + TE++LKK F + G + + +K +G+V F A +V+ +
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPA-----TKGYGYVQFKTRPSAEEAVQRMQ 293
Query: 281 GK 282
G+
Sbjct: 294 GQ 295
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 207 (77.9 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 54/169 (31%), Positives = 91/169 (53%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD--------------SLGQSRGYGFVQ 174
N+ + L +++ + FS+ G I S K+ D S GQS GYGFV
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDD 234
+ + A+ A++ LNG+ L +K + V F R ++D + N+YV L +T T+ +
Sbjct: 210 YVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP-----SSDAIKGANLYVSGLPKTMTQQE 263
Query: 235 LKKIFGEFGIITSTAVMRDA--DGKSKCFGFVNFDDPDDAARSVEALNG 281
L+ IF FG I ++ ++++A D ++K GF+ FD ++A R++ ALNG
Sbjct: 264 LEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 203 (76.5 bits), Expect = 8.1e-21, Sum P(2) = 8.1e-21
Identities = 56/186 (30%), Positives = 98/186 (52%)
Query: 22 TNGIANNGGVGDARQFVST--SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-- 77
TNG A +G + T +L V L ++ + ++ LF+ +G++ SV++ RD S
Sbjct: 129 TNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVY 188
Query: 78 -----------RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
+SLGYG+VNY +A +A++ LN L K I++ ++ R + G
Sbjct: 189 IDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA-RPSSDAIKG 247
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG--QSRGYGFVQFDNEESAKSA 184
A N+++ L K++ + L F+ FG I++ ++ ++ Q++G GF++FD E A A
Sbjct: 248 A-NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRA 306
Query: 185 IDKLNG 190
I LNG
Sbjct: 307 IIALNG 312
Score = 164 (62.8 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 48/182 (26%), Positives = 91/182 (50%)
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF-GFVN 265
Q + + +TR N+ V L +T TED+++ +F G I S ++RD KS+ + +N
Sbjct: 138 QNGSNGSTETR-TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRD---KSQVYIDPLN 193
Query: 266 FDDPDDA-ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
P + +N + D E V + +K F + ++D +G NL
Sbjct: 194 PQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA---RPSSDAIKGANL 250
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKALTEM 382
YV L +++ +L+ +F+ FG I + +++++ + +G GF+ F EEA++A+ +
Sbjct: 251 YVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIAL 310
Query: 383 NG 384
NG
Sbjct: 311 NG 312
Score = 118 (46.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184
GA IFI NL + AL F FG + S K+ D + Q +GYGFV N + A A
Sbjct: 400 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 459
Query: 185 IDKLNGMLLNDK 196
I LNG + ++
Sbjct: 460 IRALNGYTMGNR 471
Score = 112 (44.5 bits), Expect = 8.1e-21, Sum P(2) = 8.1e-21
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
+++ NL+ T E L ++FG FG + S +++D + K +GFV+ + D+AA ++ AL
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 280 NG 281
NG
Sbjct: 464 NG 465
Score = 109 (43.4 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEM 382
+++ NL + L +LF FG + S K+++DP +G GFV+ + +EA+ A+ +
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 383 NGKMVVSKPLYVALAQRK 400
NG + ++ L V+ K
Sbjct: 464 NGYTMGNRVLQVSFKTNK 481
Score = 88 (36.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALD 99
+LYV L ++ +L +F G +++ R+ ++ ++ G G++ ++ EATRA+
Sbjct: 249 NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAII 308
Query: 100 ELN-FTPLN-GKPIRIMYS 116
LN TP + PI + +S
Sbjct: 309 ALNGTTPSSCTDPIVVKFS 327
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 181 (68.8 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 48/183 (26%), Positives = 91/183 (49%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK----SKCF 261
++E E + +++KNL+ +TTE+ LK +F + G I S + + + S F
Sbjct: 709 EEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF 768
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
GFV + P+ A ++++ L G D + V +++ + + K + K+T K
Sbjct: 769 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK--- 825
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKAL 379
+ V+N+ + +++ELFS FG + + ++ + G RG GFV F T ++A KA
Sbjct: 826 --ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883
Query: 380 TEM 382
+
Sbjct: 884 NAL 886
Score = 154 (59.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 43/163 (26%), Positives = 79/163 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT--DSLGQ--SRGYGFVQFDNEESAKSAI 185
+FIKNL+ S + L FS G I SC ++ + G S G+GFV++ E A+ A+
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783
Query: 186 DKLNGMLLNDKQVFVG-------PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+L G ++ ++ V P L ++ K + + V+N+ + +++++
Sbjct: 784 KQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIREL 843
Query: 239 FGEFGIITSTAVMRDADGKS--KCFGFVNFDDPDDAARSVEAL 279
F FG + + + + G + FGFV+F DA ++ AL
Sbjct: 844 FSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
Score = 153 (58.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 39/164 (23%), Positives = 80/164 (48%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR---SLGYGYVNYNAAHEATRA 97
+L++ +L+ S + L +F+++G + S + + + S+G+G+V Y +A +A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782
Query: 98 LDELNFTPLNGKPIRIMYSYR--DPTI---------RKSGAGNIFIKNLDKSIDNKALHD 146
L +L ++G + + S R P + +K I ++N+ + + + +
Sbjct: 783 LKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRE 842
Query: 147 TFSTFGNILSCKVATDSLGQS--RGYGFVQFDNEESAKSAIDKL 188
FSTFG + + ++ G RG+GFV F ++ AK A + L
Sbjct: 843 LFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
Score = 146 (56.5 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--GI--SRGS 364
E+ +E + G L++KNL+ S +++ LK +FS+ G I SC + + N G+ S G
Sbjct: 709 EEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF 768
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
GFV + E+A KAL ++ G V L V +++R
Sbjct: 769 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 803
Score = 131 (51.2 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 35/115 (30%), Positives = 60/115 (52%)
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVN 265
+E E AD R ++V+NLS T++E+DL+K+F +G ++ D+ K K F FV
Sbjct: 391 EEEEDLADSGR---LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 447
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYV--GKAQKKYEREMELKGKFEQSLKETADK 318
F P+ A ++ ++G+ F + +V +K+ +E G + KE DK
Sbjct: 448 FMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKKKKEAMDK 502
Score = 110 (43.8 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 36/159 (22%), Positives = 76/159 (47%)
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEA----LNGKKFDD-KEWYVGKAQKKYEREMEL 304
++R+A G + FV+ ++ ++++ + G+ + +E A+ +
Sbjct: 323 IVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPW 382
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRG 363
+G+ +E D + L+V+NL + S++ L++LFS +G ++ D +G
Sbjct: 383 QGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKG 442
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
FV F E A KA E++G++ + L+V + K+E
Sbjct: 443 FAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 481
Score = 97 (39.2 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ +KNL + + F+ FG + C + G+ R +GF+ F +EE A++A++ +
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFH 63
Query: 190 GMLLNDKQVFV 200
++ ++ V
Sbjct: 64 RSFIDTTRITV 74
Score = 91 (37.1 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
+ + VKNL E+ +++F FG +T ++ DGK + FGF+ F ++A ++
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61
Query: 279 LNGKKFDD 286
+ + F D
Sbjct: 62 FH-RSFID 68
Score = 62 (26.9 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
++ ++ ++ G GY FV +EE K A+ K N + + + V F KQ +
Sbjct: 319 VAIRIVRNAHGNKTGYVFVDLSSEEEVKKAL-KCNRDYMGGRYIEV--FREKQAPTARGP 375
Query: 215 KTRFNNVYVKNLSETTTEDDL 235
+ L E E+DL
Sbjct: 376 PKSTTPWQGRTLGENEEEEDL 396
Score = 53 (23.7 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
L V +L + + + LF G + S++ +D R+ +G++ + + EA AL+
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEAQAALN 60
Query: 100 ELNFTPLNGKPIRIMY--SYRDPT 121
+ + ++ I + + S+ DP+
Sbjct: 61 HFHRSFIDTTRITVEFCKSFGDPS 84
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 221 (82.9 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 50/160 (31%), Positives = 89/160 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S+YVG++ V + L ++F G V S ++ R + YG+V+Y A A+
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIR----KDKSSYGFVHYFDRRSAALAILS 115
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-NIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L G+PI++ ++Y + + NIF+ +L + + L+ +FS F + +V
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARV 175
Query: 160 ATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
D G+SRG+GFV F N++ A++AI+++NG L+ +Q+
Sbjct: 176 MWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 183 (69.5 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 73/279 (26%), Positives = 121/279 (43%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
P S ++++ N+ + L + F++ G + S K+ YGFV + +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKD---KSSYGFVHYFDRR 107
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
SA AI LNG L + + V +RE T+ + FN ++V +LS T+ L + F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTS--SHFN-IFVGDLSPEVTDATLYQSF 164
Query: 240 GEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGKA 294
F + VM D G+S+ FGFV+F + DA ++ +NGK ++ W K
Sbjct: 165 SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT-KG 223
Query: 295 QKKYEREMELKGK--FEQSLKETADKFEGLN------------LYVKNLDDSISDDKLKE 340
+ ++ GK E + + D E LN +YV NL ++ L
Sbjct: 224 ATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHR 283
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
F G +V + +G GFV ++T EA+ A+
Sbjct: 284 YFHALGAGVIEEVRVQRD---KGFGFVRYNTHPEAALAI 319
Score = 149 (57.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 48/153 (31%), Positives = 77/153 (50%)
Query: 244 IITSTAVMRDAD--GKSKC-FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
I TST + + K K +GFV++ D AA ++ +LNG+ + V A +R
Sbjct: 78 IFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQR 137
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-G 359
E +T+ F N++V +L ++D L + FS F + + +VM D G
Sbjct: 138 E------------DTSSHF---NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTG 182
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
SRG GFV+F ++A A+ EMNGK + S+ +
Sbjct: 183 RSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 120 (47.3 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++VGDL V D+ LY F+ RV D T RS G+G+V++ +A A++E
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 101 LNFTPLNGKPIRIMYSYRDPT 121
+N L+ + IR ++ + T
Sbjct: 205 MNGKWLSSRQIRCNWATKGAT 225
Score = 89 (36.4 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG--IITSTAVMRDADGKSKCFGFVNFD 267
E+ + ++F VYV NL+ T+ DL + F G +I V RD K FGFV ++
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-----KGFGFVRYN 310
Query: 268 DPDDAARSVEALNGKKF 284
+AA +++ N + +
Sbjct: 311 THPEAALAIQMGNTQPY 327
Score = 53 (23.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + LH F G + +V + +G+GFV+++ A AI N
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ---RDKGFGFVRYNTHPEAALAIQMGN 323
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 176 (67.0 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 47/183 (25%), Positives = 92/183 (50%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD--GK--SKCF 261
++E E + +++KNL+ +TTE+ LK +F + G + S ++ + + G S F
Sbjct: 722 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGF 781
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
GFV + P+ A ++++ L G D + V +++ + K + + K+T K
Sbjct: 782 GFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSK--- 838
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKAL 379
+ V+N+ +++ELFS FG + + ++ + G RG GFV F T ++A +A
Sbjct: 839 --ILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAF 896
Query: 380 TEM 382
+
Sbjct: 897 NAL 899
Score = 162 (62.1 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 43/164 (26%), Positives = 81/164 (49%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR---SLGYGYVNYNAAHEATRA 97
+L++ +L+ S + L +F+++G V S + + + S+G+G+V Y +A +A
Sbjct: 736 TLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKA 795
Query: 98 LDELNFTPLNGKPIRIMYSYRD----PTI-------RKSGAGNIFIKNLDKSIDNKALHD 146
L +L ++G + + S R PT RK I ++N+ D++ + +
Sbjct: 796 LKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIRE 855
Query: 147 TFSTFGNILSCKVATDSLGQS--RGYGFVQFDNEESAKSAIDKL 188
FSTFG + + ++ G RG+GFV F ++ AK A + L
Sbjct: 856 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Score = 153 (58.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 43/163 (26%), Positives = 79/163 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT--DSLGQ--SRGYGFVQFDNEESAKSAI 185
+FIKNL+ S + L FS G + SC ++ + G S G+GFV++ E A+ A+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 186 DKLNGMLLNDKQVFVG-------PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+L G +++ ++ V P ++ A K + + V+N+ +++++
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIREL 856
Query: 239 FGEFGIITSTAVMRDADGKS--KCFGFVNFDDPDDAARSVEAL 279
F FG + + + + G + FGFV+F DA R+ AL
Sbjct: 857 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Score = 147 (56.8 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--G--ISRGS 364
E+ +E + G L++KNL+ S +++ LK +FS+ G + SC + + N G +S G
Sbjct: 722 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGF 781
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
GFV + E+A KAL ++ G +V L V +++R
Sbjct: 782 GFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISER 816
Score = 127 (49.8 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 48/203 (23%), Positives = 94/203 (46%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+RE T T V ++ TE ++ + + + ++R+A G + FV+F
Sbjct: 288 QREPTTPHT----VKLRGAPFNVTEKNVMEFLAPLKPV-AIRIVRNAHGNKTGYVFVDFS 342
Query: 268 DPDDAARSV----EALNGKK---FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
++ +++ E + G+ F +K KA K + +G+ +E D +
Sbjct: 343 SEEEVKKALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTKA-WQGRTLGEHEEEEDLAD 401
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKAL 379
L+V+NL + S++ L++LFS++G ++ D +G FV F E A KA
Sbjct: 402 SGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 461
Query: 380 TEMNGKMVVSKPLYVALAQRKEE 402
E++G++ + L+V + K+E
Sbjct: 462 AEVDGQVFQGRMLHVLPSTIKKE 484
Score = 123 (48.4 bits), Expect = 0.00042, P = 0.00042
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L VKNL + + +++ ++LF+ FGT+T C + +G R GF+ F + EEA AL N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 384 GKMV 387
+
Sbjct: 64 KSFI 67
Score = 121 (47.7 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 36/130 (27%), Positives = 67/130 (51%)
Query: 194 NDKQVFVGPFLRK-QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
N + + G L + +E E AD R ++V+NL T++E+DL+K+F ++G ++
Sbjct: 380 NSTKAWQGRTLGEHEEEEDLADSGR---LFVRNLPYTSSEEDLEKLFSKYGPLSELHYPI 436
Query: 253 DA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKKYEREMELKGKFE 309
D+ K K F FV F P+ A ++ ++G+ F + +V +K+ + + G
Sbjct: 437 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTPGSSS 496
Query: 310 -QSLKETADK 318
+ KE+ DK
Sbjct: 497 YKKKKESKDK 506
Score = 103 (41.3 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ +KNL + + F+ FG + C + G+ R +GF+ F +EE A++A++ N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 190 GMLLNDKQVFV 200
++ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 97 (39.2 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
+ + VKNL E+ +++F FG +T ++ DGK + FGF+ F ++A ++
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 279 LNGKKFDD 286
N K F D
Sbjct: 62 FN-KSFID 68
Score = 96 (38.9 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 48/218 (22%), Positives = 95/218 (43%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S L+V +L + ++ L LF++ G + + D T++ G+ +V + A +A
Sbjct: 402 SGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 461
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGA------GNIFIKNLDKSIDNKALHDTFSTFG 152
E++ G+ + ++ S TI+K + G+ K +S D KA + +
Sbjct: 462 AEVDGQVFQGRMLHVLPS----TIKKEASEDTDTPGSSSYKKKKESKD-KASSSSSHNWN 516
Query: 153 NI-LSCKVATDSLGQSRGYGFVQ-FDNEESAKSAIDKLNG--MLLNDKQVFV---GPFLR 205
+ + D++ Q Q FD+E A+ G L+ + + F+ G L
Sbjct: 517 TLFMGPNAVADAIAQKYNSTKSQVFDHETKGSVAVRVALGETQLVQEVRRFLLDNGVSLD 576
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
++ A++++ + KNL T +L++ FG FG
Sbjct: 577 SFS-QAAAERSK-TVILAKNLPAGTQAAELQETFGRFG 612
Score = 65 (27.9 bits), Expect = 9.2e-17, Sum P(3) = 9.2e-17
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
L V +L + + + LF G + S++ +D R+ +G++ + + EA AL+
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEAQTALN 60
Query: 100 ELNFTPLNGKPIRIMY--SYRDPT 121
N + ++ I + + S+ DPT
Sbjct: 61 HFNKSFIDTSRITVEFCKSFGDPT 84
Score = 61 (26.5 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
++ ++ ++ G GY FV F +EE K A+ + N + + + V F K + A
Sbjct: 321 VAIRIVRNAHGNKTGYVFVDFSSEEEVKKAL-QCNREYMGGRYIEV--FREKSIPTAKAP 377
Query: 215 KTRFNNVYV-KNLSETTTEDDL 235
+ + L E E+DL
Sbjct: 378 PKNSTKAWQGRTLGEHEEEEDL 399
Score = 59 (25.8 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
+ KNL +L+E F FG++ +V+ G++ V F A EA KA +
Sbjct: 590 ILAKNLPAGTQAAELQETFGRFGSLG--RVLLPEGGVT---AIVEFLEALEARKAFRHLA 644
Query: 384 GKMVVSKPLYVALA 397
PLY+ A
Sbjct: 645 YSKFHHVPLYLEWA 658
Score = 57 (25.1 bits), Expect = 6.1e-16, Sum P(3) = 6.1e-16
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
V++R+ R+ ++ GY +V++++ E +AL + N + G+ I + PT +
Sbjct: 321 VAIRIVRNAHGNKT-GYVFVDFSSEEEVKKAL-QCNREYMGGRYIEVFREKSIPTAK 375
Score = 42 (19.8 bits), Expect = 9.6e-09, Sum P(3) = 9.6e-09
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNI 154
I KNL L +TF FG++
Sbjct: 590 ILAKNLPAGTQAAELQETFGRFGSL 614
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 259 (96.2 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 72/265 (27%), Positives = 127/265 (47%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G SCK+ T+ Y FV+F A +A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + K+V V ++ D + +V+V +LS T +D+K F FG I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK--AQKKYEREM 302
V++D A GKSK +GFV+F + DA ++ + G+ ++ W K A K +
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
+ +FE + +++ K +Y + ++D +++ FS FG I +V + +
Sbjct: 188 TKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----K 240
Query: 363 GSGFVAFSTAEEASKALTEMNGKMV 387
G FV FST E A+ A+ +NG +
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 223 (83.6 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 70/275 (25%), Positives = 128/275 (46%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V + + LF+Q+G S ++ + ++ Y +V + +A AL
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + GK +++ ++ P+ +K N +F+ +L I + + F+ FG I
Sbjct: 68 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-----PFLRKQERES 211
+V D + G+S+GYGFV F N+ A++AI + G L +Q+ P K +E+
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 212 TADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
+ RF +V Y ++ T+ +++ F FG I V + K
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KG 241
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
+ FV F + AA ++ ++NG + + Y GK
Sbjct: 242 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
Score = 169 (64.5 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 51/181 (28%), Positives = 90/181 (49%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G S ++ + + FV F + DAA ++ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ K+T++ F +++V +L I+ + +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 400 K 400
K
Sbjct: 176 K 176
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 259 (96.2 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 72/265 (27%), Positives = 127/265 (47%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G SCK+ T+ Y FV+F A +A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + K+V V ++ D + +V+V +LS T +D+K F FG I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK--AQKKYEREM 302
V++D A GKSK +GFV+F + DA ++ + G+ ++ W K A K +
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
+ +FE + +++ K +Y + ++D +++ FS FG I +V + +
Sbjct: 188 TKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----K 240
Query: 363 GSGFVAFSTAEEASKALTEMNGKMV 387
G FV FST E A+ A+ +NG +
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 223 (83.6 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 70/275 (25%), Positives = 128/275 (46%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V + + LF+Q+G S ++ + ++ Y +V + +A AL
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + GK +++ ++ P+ +K N +F+ +L I + + F+ FG I
Sbjct: 68 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-----PFLRKQERES 211
+V D + G+S+GYGFV F N+ A++AI + G L +Q+ P K +E+
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 212 TADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
+ RF +V Y ++ T+ +++ F FG I V + K
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KG 241
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
+ FV F + AA ++ ++NG + + Y GK
Sbjct: 242 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
Score = 169 (64.5 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 51/181 (28%), Positives = 90/181 (49%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G S ++ + + FV F + DAA ++ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ K+T++ F +++V +L I+ + +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 400 K 400
K
Sbjct: 176 K 176
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 182 (69.1 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 42/160 (26%), Positives = 84/160 (52%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSA 184
G +F+ ++ S++ + + F+ FGNIL + D S+G F+ F +E A +A
Sbjct: 16 GGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNA 75
Query: 185 IDKLN--GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
++ N G L + P L+ + ++ +K +++ L T+ ED ++ +FG +
Sbjct: 76 LNTTNESGTFLENMNK---P-LQVKYSDNEIEKME-RKLFIGMLG-TSDEDQIRILFGNY 129
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
GII ++R+ DGK K +GF+ + D++ ++ ++GK
Sbjct: 130 GIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGK 169
Score = 173 (66.0 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 39/154 (25%), Positives = 79/154 (51%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++VG + S+N+ + +FN+ G ++ + + +D T S G ++ ++ EA AL+
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNT 78
Query: 101 LN----FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
N F KP+++ YS D I K +FI L S D + F +G I
Sbjct: 79 TNESGTFLENMNKPLQVKYS--DNEIEKMER-KLFIGMLGTS-DEDQIRILFGNYGIIED 134
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
+ + G+ +GYGF+++ + +++A+ +++G
Sbjct: 135 LNIVREKDGKPKGYGFIKYSTRDESENALREIDG 168
Score = 162 (62.1 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 50/208 (24%), Positives = 102/208 (49%)
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFG 262
L++Q+++ F V+V ++ + E+ + +IF +FG I +++D SK
Sbjct: 4 LQQQQQQQFNQLGGFT-VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCA 62
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
F+ F ++A ++ N G + + +++K S E +K E
Sbjct: 63 FITFSTKEEADNALNTTNES---------GTFLENMNKPLQVK----YSDNEI-EKMER- 107
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
L++ L S +D+++ LF +G I ++R+ +G +G GF+ +ST +E+ AL E+
Sbjct: 108 KLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREI 166
Query: 383 NGKMVV---SKPLYVALAQRKEERRARL 407
+GK + + P+ V A + ++R +L
Sbjct: 167 DGKHTLPGSNLPIIVKFADTERQKRKKL 194
Score = 137 (53.3 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 27/96 (28%), Positives = 58/96 (60%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGF 263
++Q+++ N++++ L T +++LK++F +G + S+ V D + + SKCFGF
Sbjct: 273 QQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGF 332
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVG-KAQKKY 298
V++D+ A +++ LNG+ + K+ V K +K++
Sbjct: 333 VSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREKQF 368
Score = 127 (49.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAI 185
+ ++FI L + ++ L F+ +GN++S KV D + QS+ +GFV +DN +SA +AI
Sbjct: 286 SNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAI 345
Query: 186 DKLNGMLLNDKQVFVGPFLRKQE 208
+LNG + K++ V F R+++
Sbjct: 346 QELNGRAIEGKKLKVN-FKREKQ 367
Score = 123 (48.4 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFV 367
+Q ++ E +L++ L + D++LK+LF+ +G + S KV D N S+ GFV
Sbjct: 274 QQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFV 333
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
++ + A A+ E+NG+ + K L V + K+
Sbjct: 334 SYDNTQSAIAAIQELNGRAIEGKKLKVNFKREKQ 367
Score = 115 (45.5 bits), Expect = 0.00081, P = 0.00081
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S L++ L + D +L LF G V+S +V D +T++S +G+V+Y+ A A+
Sbjct: 286 SNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAI 345
Query: 99 DELNFTPLNGKPIRIMY 115
ELN + GK +++ +
Sbjct: 346 QELNGRAIEGKKLKVNF 362
Score = 84 (34.6 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++G L S D Q+ LF G + + + R+ + GYG++ Y+ E+ AL E+
Sbjct: 109 LFIGMLGTSDED-QIRILFGNYGIIEDLNIVREKDGKPK-GYGFIKYSTRDESENALREI 166
Query: 102 N--FT-PLNGKPIRIMYSYRDPTIRKSGAGN 129
+ T P + PI + ++ + RK GN
Sbjct: 167 DGKHTLPGSNLPIIVKFADTERQKRKKLLGN 197
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 245 (91.3 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF +G++ S ++ RD T +SLGYG+VNY +A +A++
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N+++ L K++ K L FS +G I++ ++
Sbjct: 99 TLNGLRLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 160 ATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG 190
D + G SRG GF++FD A+ AI LNG
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 231 (86.4 bits), Expect = 7.9e-19, P = 7.9e-19
Identities = 54/156 (34%), Positives = 89/156 (57%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + L F + G I SCK+ D + GQS GYGFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T T+ +L+++F ++G IIT
Sbjct: 100 LNGLRLQTKTIKVS-----YARPSSAS-IRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
S ++ G S+ GF+ FD +A +++ LNG+
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 147 (56.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 46/167 (27%), Positives = 82/167 (49%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+ V L + T+++LK +FG G I S ++RD + G+ F + D + +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKAI 97
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + Y R S+++ NLYV L +++ +L+
Sbjct: 98 N--TLNGLRLQTKTIKVSYARPSSA------SIRDA-------NLYVSGLPKTMTQKELE 142
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK 385
+LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+
Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 131 (51.2 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTE 381
NL V L +++ ++LK LF G I SCK++RD G S G GFV + ++A KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 382 MNGKMVVSKPLYVALAQ 398
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 259 (96.2 bits), Expect = 3.1e-20, P = 3.1e-20
Identities = 57/161 (35%), Positives = 90/161 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++YVG+LD ++ ++++ QMG VV++ + D +R GYG+V ++ A A
Sbjct: 13 TVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARA 72
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KV 159
LN + GK IR+ + D +F+ NLD +D K L DTFS FG +++ V
Sbjct: 73 LNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTPPNV 132
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
D+ S+GYGFV FD+ E++ +A D +NG L KQ+ V
Sbjct: 133 VRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITV 173
Score = 201 (75.8 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 59/188 (31%), Positives = 92/188 (48%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEAL 279
VYV NL E E + ++ + G + + + D ++ + +GFV FD P+ A + AL
Sbjct: 14 VYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARAL 73
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + K V KA ++ E+ G L+V NLD + + L
Sbjct: 74 NGIRVFGKVIRVNKASADKQKTAEI----------------GAELFVNNLDPQVDEKILF 117
Query: 340 ELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG +T V+RD N IS+G GFV F + E + A MNG+ ++SK + V A
Sbjct: 118 DTFSRFGQLVTPPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAY 177
Query: 399 RKEERRAR 406
+K+ + R
Sbjct: 178 KKDGKGER 185
Score = 124 (48.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ L+V +LD V++ L+D F++ GQ+V+ V RD + S GYG+VN+++ +
Sbjct: 98 IGAELFVNNLDPQVDEKILFDTFSRFGQLVTPPNVVRD-ANNISKGYGFVNFDSFEASDT 156
Query: 97 ALDELNFTPLNGKPIRIMYSYR 118
A D +N L K I + Y+Y+
Sbjct: 157 ARDTMNGQYLLSKQITVEYAYK 178
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 231 (86.4 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 48/179 (26%), Positives = 95/179 (53%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD ++ + L F G + ++++ D +++ Y +V Y+ +H+A AL L
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTL 135
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N + ++I ++++ N+F+ +L+ ++D++ L + F F + LS V
Sbjct: 136 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 195
Query: 162 D-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
D G SRGYGFV F +++ A++A+D + G LN + + + ++ + + R N
Sbjct: 196 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRN 254
Score = 201 (75.8 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 53/182 (29%), Positives = 95/182 (52%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NL + TED LK+ F G I + +M D + K+ + FV + DA +++ LN
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 136
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK+ ++ +++ F+ + D F NL+V +L+ ++ D+ L+
Sbjct: 137 GKQIENNI-------------VKINWAFQSQQSSSDDTF---NLFVGDLNVNVDDETLRN 180
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F +F + S VM D G SRG GFV+F++ ++A A+ M G+ + +PL + A +
Sbjct: 181 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Query: 400 KE 401
++
Sbjct: 241 RD 242
Score = 187 (70.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 47/169 (27%), Positives = 86/169 (50%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NLDK+I L F G I + K+ D ++ Y FV++ A A+ LN
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 136
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + + V + + Q+ S++D T FN ++V +L+ ++ L+ F +F S
Sbjct: 137 GKQIENNIVKINWAFQSQQ--SSSDDT-FN-LFVGDLNVNVDDETLRNAFKDFPSYLSGH 192
Query: 250 VMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
VM D G S+ +GFV+F DDA +++++ G+ + + + A K+
Sbjct: 193 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 140 (54.3 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L+VGDL+++V+D L + F +S V D+ T S GYG+V++ + +A A+D
Sbjct: 163 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 222
Query: 101 LNFTPLNGKPIRIMYS 116
+ LNG+P+RI ++
Sbjct: 223 MQGQDLNGRPLRINWA 238
Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
+ET+D+ LYV NLD +I++D LK+ F G I + K+M D N + FV + +
Sbjct: 70 RETSDRV----LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQS 125
Query: 373 EEASKALTEMNGKMV 387
+A+ AL +NGK +
Sbjct: 126 HDANIALQTLNGKQI 140
Score = 70 (29.7 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 23/92 (25%), Positives = 37/92 (40%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
R Y+ N+ TE DL +F FG I + K CF + +D + AA +
Sbjct: 339 RVTTAYIGNIPHFATEADLIPLFQNFGFILD---FKHYPEKGCCF--IKYDTHEQAAVCI 393
Query: 277 EALNGKKFDDKEWYVG--KAQKKYEREMELKG 306
AL F + G K + + + + +G
Sbjct: 394 VALANFPFQGRNLRTGWGKERSNFMPQQQQQG 425
Score = 48 (22.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
Y+ N+ ++ L LF FG I K P +G F+ + T E+A+ + +
Sbjct: 344 YIGNIPHFATEADLIPLFQNFGFILDFK--HYPE---KGCCFIKYDTHEQAAVCIVAL 396
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 235 (87.8 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 60/190 (31%), Positives = 103/190 (54%)
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
TA + +YV L TED L++IF G + + ++ D + K +GFV +DDP
Sbjct: 78 TAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGA 137
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+++ LNG++ E V A Y+ + ++T++ F +++V +L +
Sbjct: 138 ADRAMQTLNGRRVHQSEIRVNWA---YQAATSA------TKEDTSNHF---HIFVGDLSN 185
Query: 332 SISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
++D+ L + FS FG+++ +VM D G SRG GFVAF +A KAL+ M+G+ + S+
Sbjct: 186 EVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSR 245
Query: 391 PLYVALAQRK 400
+ A +K
Sbjct: 246 AIRCNWANQK 255
Score = 220 (82.5 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 51/163 (31%), Positives = 85/163 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG LD V + L +F G V +V++ D + + YG+V Y+ A RA+
Sbjct: 86 ALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAK-GYNYGFVEYDDPGAADRAMQT 144
Query: 101 LNFTPLNGKPIRIMYSYRDPT-IRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILS 156
LN ++ IR+ ++Y+ T K N IF+ +L ++++ L FS FG++
Sbjct: 145 LNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSE 204
Query: 157 CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+V D G+SRGYGFV F + A+ A+ ++G L + +
Sbjct: 205 ARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Score = 192 (72.6 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 40/154 (25%), Positives = 80/154 (51%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ LD + L F T G++ + K+ D + YGFV++D+ +A A+ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G ++ ++ V + + D + +++V +LS ++ L + F FG ++
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206
Query: 250 VMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGK 282
VM D G+S+ +GFV F D DA +++ +++G+
Sbjct: 207 VMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGE 240
Score = 122 (48.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL VND L F+ G V RV D+ T RS GYG+V + +A +AL +
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 102 NFTPLNGKPIRIMYSYR--DPTIRKSGA 127
+ L + IR ++ + P+I + A
Sbjct: 238 DGEWLGSRAIRCNWANQKGQPSIAQQQA 265
Score = 84 (34.6 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
YV NL+ TT +D+ +F FG + + D + F F+ D ++AA+++ LNG
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICGLNG 359
Score = 76 (31.8 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
YV NL + + + LF FG + + D RG F+ + E A++A+ +NG
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICGLNG 359
Query: 385 KMVVSKPL 392
V +PL
Sbjct: 360 YNVNGRPL 367
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 247 (92.0 bits), Expect = 9.0e-20, P = 9.0e-20
Identities = 70/266 (26%), Positives = 126/266 (47%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G SCK+ D+ G Y FV+F A +A+ +N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + K + V ++ D + +V+V +LS + DD++ F FG I+
Sbjct: 70 GRKILGKDMKVNWASTPSSQKK--DTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDAR 127
Query: 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK--AQKKYEREM 302
V++D A GKSK +GF++F + DA +++ +NG+ ++ W K A K
Sbjct: 128 VVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGA 187
Query: 303 ELKG-KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
K +E+ L +++ +Y + +SD +++ FS FG I +V +
Sbjct: 188 SSKHLSYEEVLNQSSPS--NCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE----- 240
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
+G FV F + E A+ A+ +NG +
Sbjct: 241 KGYSFVRFDSHEGAAHAIVSVNGTCI 266
Score = 208 (78.3 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 65/257 (25%), Positives = 120/257 (46%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + +F+Q+G S ++ D T + Y +V + A AL
Sbjct: 10 TLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAAALAA 67
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + GK +++ ++ P+ +K N +F+ +L I + F+ FG I
Sbjct: 68 MNGRKILGKDMKVNWA-STPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDA 126
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADK 215
+V D + G+S+GYGF+ F N+ A+SAI ++NG L +Q+ RK +S +
Sbjct: 127 RVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEG 186
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD---GK--------SKCFGFV 264
++ + + ++ + G S +MR G+ K + FV
Sbjct: 187 ASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFV 246
Query: 265 NFDDPDDAARSVEALNG 281
FD + AA ++ ++NG
Sbjct: 247 RFDSHEGAAHAIVSVNG 263
Score = 186 (70.5 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 53/188 (28%), Positives = 95/188 (50%)
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
D+ + +YV NLS TE + ++F + G S ++ D G + FV F + AA
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAA 62
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++ A+NG+K K+ V A ++ K+T++ F +++V +L I
Sbjct: 63 AALAAMNGRKILGKDMKVNWASTPSSQK-----------KDTSNHF---HVFVGDLSPEI 108
Query: 334 SDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
S D ++ F+ FG I+ +V++D G S+G GF++F +A A+ +MNG+ + + +
Sbjct: 109 STDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQI 168
Query: 393 YVALAQRK 400
A RK
Sbjct: 169 RTNWATRK 176
Score = 160 (61.4 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 47/173 (27%), Positives = 82/173 (47%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL ++ + F G++ RV +DL+T +S GYG++++ +A A+ ++
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD-KSIDNKALHDTFSTF-GNILS--- 156
N L G+ IR ++ R P+ KS K+L + + N++ + + G I S
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLS 218
Query: 157 ---CKVATDSLGQ--------SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ GQ +GY FV+FD+ E A AI +NG + V
Sbjct: 219 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTV 271
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 184 (69.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 49/145 (33%), Positives = 72/145 (49%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VG + S+++SQL ++F + G V S+ V RD +T S G +V + H A +A D L
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDAL 418
Query: 102 -NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
N LNG I D R +F+ L+K ++ + F G I C V
Sbjct: 419 HNVKTLNGMYHPIQMKPADSENRNER--KLFVGMLNKKLNENDVRKLFEVHGAIEECTVL 476
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAI 185
D GQS+G FV F + +A SAI
Sbjct: 477 RDQNGQSKGCAFVTFATKHAAISAI 501
Score = 144 (55.7 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188
+F+ + KS+D L + F +G + S V D + G S+G FV F +A A D L
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDAL 418
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
+ + + G + Q + + ++ ++V L++ E+D++K+F G I
Sbjct: 419 HNV-----KTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHGAIEEC 473
Query: 249 AVMRDADGKSKCFGFVNF 266
V+RD +G+SK FV F
Sbjct: 474 TVLRDQNGQSKGCAFVTF 491
Score = 133 (51.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 39/124 (31%), Positives = 62/124 (50%)
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLN---LYVKNLDDSISDDKLKELFSEFGTIT 349
KAQ L G + + AD E N L+V L+ ++++ +++LF G I
Sbjct: 413 KAQDALHNVKTLNGMYHPIQMKPADS-ENRNERKLFVGMLNKKLNENDVRKLFEVHGAIE 471
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKAL--TEMNGKMV--VSKPLYVALAQ-RKEERR 404
C V+RD NG S+G FV F+T A A+ T K++ + PL V A +KE+ +
Sbjct: 472 ECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQ 531
Query: 405 ARLQ 408
++Q
Sbjct: 532 KKIQ 535
Score = 129 (50.5 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDK 187
N+FI +L + + L TF FGN++S KV D S+ +GFV FDN +SA+ AI
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 787 MNGFQVGTKRLKV 799
Score = 128 (50.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVEA 278
N+++ +L + T+ DL F FG + S V D SKCFGFV+FD+PD A +++A
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 279 LNG 281
+NG
Sbjct: 787 MNG 789
Score = 126 (49.4 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKA 378
EG NL++ +L +D L F FG + S KV D +S+ GFV+F + A A
Sbjct: 724 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 783
Query: 379 LTEMNGKMVVSKPLYVALAQRKEER 403
+ MNG V +K L V L + K+ +
Sbjct: 784 IKAMNGFQVGTKRLKVQLKKPKDSK 808
Score = 37 (18.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
R++ERE ++ R + ++ N S+ ++ + K
Sbjct: 198 RERERERERERERDRSSFIDN-SDYDSQTEFK 228
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 250 (93.1 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 74/275 (26%), Positives = 136/275 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 190 GMLLNDKQVFVG----PFLRKQERES-TADKTRFN----NVYVKNLSETTTEDDLKKIFG 240
G + K+V V P +K++ S T T+ + +V+V +LS T +D+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 241 EFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK-- 293
FG I+ V++D A GKSK +GFV+F + DA +++ + G+ ++ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 294 AQKK-YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
A K YE + + +++ + +++ +Y + +++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK-QLSYDEVVSQSSPN--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
V D +G FV FS+ E A+ A+ +NG +
Sbjct: 245 VFPD-----KGYSFVRFSSHESAAHAIVSVNGTTI 274
Score = 209 (78.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 72/285 (25%), Positives = 129/285 (45%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V ++ A AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN-------------IFIKNLDKSIDNKALHDT 147
+N + GK +++ ++ + +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----- 201
F+ FG I +V D + G+S+GYGFV F N+ A++AI ++ G L +Q+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 202 PFLRKQERESTADKTRF---------NN--VYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
P K ES + + NN VY ++ TE +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
D K + FV F + AA ++ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 193 (73.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ + S + + D F +++V +L I+ + +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 400 K 400
K
Sbjct: 185 K 185
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 249 (92.7 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 69/266 (25%), Positives = 130/266 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + K+V V ++ D + +V+V +LS T +D+K F FG I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK--AQKK-YERE 301
V++D A GKSK +GFV+F + DA +++ + G+ ++ W K A K YE
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
+ + +++ + +++ +Y + +++ +++ FS FG I +V D
Sbjct: 186 TK-QLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD----- 237
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
+G F+ FS+ E A+ A+ +NG +
Sbjct: 238 KGYSFIRFSSHESAAHAIVSVNGTTI 263
Score = 230 (86.0 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 71/275 (25%), Positives = 128/275 (46%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V ++ A AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + GK +++ ++ P+ +K N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-----PFLRKQERES 211
+V D + G+S+GYGFV F N+ A++AI ++ G L +Q+ P K ES
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 212 TADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
+ ++ V Y ++ TE +++ F FG I V D K
Sbjct: 185 NTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KG 239
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
+ F+ F + AA ++ ++NG + + Y GK
Sbjct: 240 YSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 174 (66.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ K+T++ F +++V +L I+ + +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 400 K 400
K
Sbjct: 174 K 174
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 248 (92.4 bits), Expect = 3.5e-19, P = 3.5e-19
Identities = 70/266 (26%), Positives = 129/266 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A SA+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + K+V V ++ D + +V+V +LS T +D+K F FG I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK--AQKK-YERE 301
V++D A GKSK +GFV+F + DA +++ + G+ ++ W K A K YE
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
+ + ++ + +++ +Y + +++ +++ FS FG I +V D
Sbjct: 186 TK-QLSYDDVVNQSSPS--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD----- 237
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
+G FV F++ E A+ A+ +NG +
Sbjct: 238 KGYSFVRFNSHESAAHAIVSVNGTTI 263
Score = 230 (86.0 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 72/275 (26%), Positives = 129/275 (46%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V + A AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALAA 65
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + GK +++ ++ P+ +K N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-----PFLRKQERES 211
+V D + G+S+GYGFV F N+ A++AI ++ G L +Q+ P K ES
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 212 TADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
+ +++V Y ++ TE +++ F FG I V D K
Sbjct: 185 NTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KG 239
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
+ FV F+ + AA ++ ++NG + + Y GK
Sbjct: 240 YSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 172 (65.6 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ K+T++ F +++V +L I+ + +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 400 K 400
K
Sbjct: 174 K 174
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 247 (92.0 bits), Expect = 6.1e-19, P = 6.1e-19
Identities = 73/275 (26%), Positives = 136/275 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 190 GMLLNDKQVFVG----PFLRKQERES-TADKTRFN----NVYVKNLSETTTEDDLKKIFG 240
G + K+V V P +K++ S T T+ + +V+V +LS T +D+K F
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 123
Query: 241 EFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK-- 293
FG I+ V++D A GKSK +GFV+F + DA +++ + G+ ++ W K
Sbjct: 124 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 183
Query: 294 AQKK-YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
A K YE + + +++ + +++ +Y + +++ +++ FS FG I +
Sbjct: 184 APKSTYESNTK-QLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 240
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
V D +G F+ FS+ E A+ A+ +NG +
Sbjct: 241 VFPD-----KGYSFIRFSSHESAAHAIVSVNGTTI 270
Score = 204 (76.9 bits), Expect = 8.1e-14, P = 8.1e-14
Identities = 69/285 (24%), Positives = 128/285 (44%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V ++ A AL
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 61
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN-------------IFIKNLDKSIDNKALHDT 147
+N + GK +++ ++ + +K + + +F+ +L I + +
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 121
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----- 201
F+ FG I +V D + G+S+GYGFV F N+ A++AI ++ G L +Q+
Sbjct: 122 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 181
Query: 202 PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAV 250
P K ES + ++ V Y ++ TE +++ F FG I V
Sbjct: 182 PPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 241
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
D K + F+ F + AA ++ ++NG + + Y GK
Sbjct: 242 FPD-----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 281
Score = 193 (73.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ + S + + D F +++V +L I+ + +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 120
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 400 K 400
K
Sbjct: 181 K 181
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 232 (86.7 bits), Expect = 6.2e-19, P = 6.2e-19
Identities = 50/75 (66%), Positives = 60/75 (80%)
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 3 KE-FSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 61 RKEERQAHLTNQYMQ 75
Score = 148 (57.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+K F FG ITS VM + G+SK FGFV F P++A ++V +NG+ K YV AQ
Sbjct: 2 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 296 KKYEREMELKGKFEQSL 312
+K ER+ L ++ Q +
Sbjct: 61 RKEERQAHLTNQYMQRM 77
Score = 127 (49.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++V RK+
Sbjct: 5 FSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 208 ERES 211
ER++
Sbjct: 64 ERQA 67
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 247 (92.0 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 73/275 (26%), Positives = 136/275 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 190 GMLLNDKQVFVG----PFLRKQERES-TADKTRFN----NVYVKNLSETTTEDDLKKIFG 240
G + K+V V P +K++ S T T+ + +V+V +LS T +D+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 241 EFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK-- 293
FG I+ V++D A GKSK +GFV+F + DA +++ + G+ ++ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 294 AQKK-YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
A K YE + + +++ + +++ +Y + +++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
V D +G FV F++ E A+ A+ +NG +
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 206 (77.6 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 70/285 (24%), Positives = 129/285 (45%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V ++ A AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN-------------IFIKNLDKSIDNKALHDT 147
+N + GK +++ ++ + +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----- 201
F+ FG I +V D + G+S+GYGFV F N+ A++AI ++ G L +Q+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 202 PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAV 250
P K ES + ++ V Y ++ TE +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
D K + FV F+ + AA ++ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 193 (73.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ + S + + D F +++V +L I+ + +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 400 K 400
K
Sbjct: 185 K 185
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 247 (92.0 bits), Expect = 6.6e-19, P = 6.6e-19
Identities = 73/275 (26%), Positives = 136/275 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 190 GMLLNDKQVFVG----PFLRKQERES-TADKTRFN----NVYVKNLSETTTEDDLKKIFG 240
G + K+V V P +K++ S T T+ + +V+V +LS T +D+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 241 EFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK-- 293
FG I+ V++D A GKSK +GFV+F + DA +++ + G+ ++ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 294 AQKK-YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
A K YE + + +++ + +++ +Y + +++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
V D +G FV F++ E A+ A+ +NG +
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 206 (77.6 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 70/285 (24%), Positives = 129/285 (45%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V ++ A AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN-------------IFIKNLDKSIDNKALHDT 147
+N + GK +++ ++ + +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----- 201
F+ FG I +V D + G+S+GYGFV F N+ A++AI ++ G L +Q+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 202 PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAV 250
P K ES + ++ V Y ++ TE +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
D K + FV F+ + AA ++ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 193 (73.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ + S + + D F +++V +L I+ + +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 400 K 400
K
Sbjct: 185 K 185
>POMBASE|SPAC1610.03c [details] [associations]
symbol:crp79 "poly(A) binding protein Crp79"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006406
"mRNA export from nucleus" evidence=IMP] [GO:0008143 "poly(A) RNA
binding" evidence=IDA] [GO:0030437 "ascospore formation"
evidence=IDA] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0061013 "regulation of mRNA catabolic process" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC1610.03c GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0006406 GO:GO:0030437
eggNOG:COG0724 GO:GO:0008143 GO:GO:0061013 EMBL:AF432874
EMBL:AB054316 RefSeq:NP_001018242.1 ProteinModelPortal:Q9P6M8
STRING:Q9P6M8 EnsemblFungi:SPAC1610.03c.1 GeneID:3361521
KEGG:spo:SPAC1610.03c OrthoDB:EOG486CPJ NextBio:20811563
Uniprot:Q9P6M8
Length = 710
Score = 199 (75.1 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 47/93 (50%), Positives = 61/93 (65%)
Query: 323 NLYVKNLDDSISDDK--LKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
NLYVKNLDD++ K L++LFS FG+I S + PN GIS+G GFVAF E A +A
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412
+NG MV K ++V A+RK +R RLQA F+
Sbjct: 443 DTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFA 475
Score = 179 (68.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 71/227 (31%), Positives = 112/227 (49%)
Query: 107 NGKPIRIMY--SYRD--PTIRKS--GAGNIFIKNLDKSIDN-KA-LHDTFSTFGNILSCK 158
+ KP I++ S R+ P+I S N+++KNLD ++ K+ L D FS FG+ILS
Sbjct: 355 DNKPQSIVHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSM 414
Query: 159 VAT-DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
+A + G S+GYGFV F E+A A D LNGM++ K++FV RK +R +
Sbjct: 415 LACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRL-QAF 473
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N K SE T + D K +F + ++ + + + + ++P + VE
Sbjct: 474 FAN---KPTSEQTAQQDNKALFVKPERSSTVTIRKPIESSTNKIS----ENPTTLSSKVE 526
Query: 278 ALNGKKF-DDKE-----WYVGKAQKKYEREMELKGKFEQSLKETADK 318
N K ++KE YV Q+ E +L G + +K+ A K
Sbjct: 527 NKNEPKTGENKEPSQTNEYVNCKQENKELSGQLSGNLD--IKKEAGK 571
Score = 76 (31.8 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 37 FVST-SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
F ST L + +L V LY+ F Q G V V + L +R YG V ++
Sbjct: 199 FASTLPLSILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLD-QRGFRYGEVIMDSVESCQ 257
Query: 96 RALDELNFTPLNGKPIRI 113
A+++LN P G + +
Sbjct: 258 NAIEKLNNVPYKGSILEV 275
Score = 75 (31.5 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 29/128 (22%), Positives = 55/128 (42%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KVATDSL----------GQSRG--YGFV 173
+ I++ N+D + ++ + FS +G + S + DS G YGFV
Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFV 75
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQV-----FVGPFLRKQERESTADKTRFNNVYVKNLSE 228
+F N ES + + GM L +++ V P ++ D + NV+ ++
Sbjct: 76 KFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKKFKPNDTSITANVFNPSIQN 135
Query: 229 TTTEDDLK 236
T E+++K
Sbjct: 136 NTDEENVK 143
Score = 68 (29.0 bits), Expect = 7.4e-19, Sum P(3) = 7.4e-19
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+ NL T DL F + G++ TAV + D + +G V D + ++E LN
Sbjct: 207 ILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLDQRGFRYGEVIMDSVESCQNAIEKLN 264
Score = 65 (27.9 bits), Expect = 7.8e-18, Sum P(3) = 7.8e-18
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
S+++YVG++D ++D ++ F++ GQV S+
Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 61 (26.5 bits), Expect = 4.1e-17, Sum P(3) = 4.1e-17
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRG--YGFVQFDNEESAKSAIDKLN 189
I NL + L++ F G + V+ L Q RG YG V D+ ES ++AI+KLN
Sbjct: 207 ILNLPAEVTPIDLYNHFKQAGVVKGTAVS-QFLDQ-RGFRYGEVIMDSVESCQNAIEKLN 264
Query: 190 GM 191
+
Sbjct: 265 NV 266
Score = 46 (21.3 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+ +YV N+ +++++ K F ++G + S
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVES 45
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 253 (94.1 bits), Expect = 9.4e-19, P = 9.4e-19
Identities = 84/370 (22%), Positives = 178/370 (48%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SL+V +L + + +L + +++V ++ S +GYV++ +A + +AL +
Sbjct: 280 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVS-EVRIGSSKRFGYVDFLSAEDMDKAL-Q 337
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKS----GAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LN L G I++ + +++++ A +F+KNL + + + F N L
Sbjct: 338 LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALE 394
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
++ + G S+G +++F E A+ A+++ G ++ + + + K ++ES
Sbjct: 395 VRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGG 454
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+ + V NLS +E+ L+++F + TS + ++ G+ K + FV F +DA
Sbjct: 455 ERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKE 511
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYER-EMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++ + N + + + + + +++ M +G F Q K L+V+ L +
Sbjct: 512 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVRGLSEDT 562
Query: 334 SDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+++ L+E F G+I S +++ D + G S+G GFV FS+ E+A A M + +
Sbjct: 563 TEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 619
Query: 393 YVALAQRKEE 402
+ A+ K E
Sbjct: 620 TLDFAKPKGE 629
Score = 185 (70.2 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 53/187 (28%), Positives = 96/187 (51%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
+++VKNL+ T ++L+ EF + V G SK FG+V+F +D ++++ L
Sbjct: 280 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-L 338
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGKK +G E ++E K K ++SLKE + + L+VKNL +++D++K
Sbjct: 339 NGKKL------MG-----LEIKLE-KAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 386
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+F +++ + G S+G ++ F T EA KAL E G V + + +
Sbjct: 387 NVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGE 443
Query: 400 KEERRAR 406
K ++ ++
Sbjct: 444 KSQQESQ 450
Score = 183 (69.5 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 64/266 (24%), Positives = 124/266 (46%)
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
+ A ++F+KNL + D + L F + +V+ +G S+ +G+V F + E A
Sbjct: 276 ASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA 335
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+ +LNG L ++ + K+ + + ++VKNL TED++K +F E +
Sbjct: 336 L-QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF-ENAL 393
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
++ + +G SK ++ F +A +++E G + D + + +K ++E +
Sbjct: 394 --EVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ- 450
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRG 363
KG E+ K L V NL + S++ L+ELF + +I + + P G +
Sbjct: 451 KGGGERESK---------TLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFV 501
Query: 364 SGFVAFSTAEEASKAL--TEMNGKMV 387
F A+EA + TE+ G+ +
Sbjct: 502 E-FPTAEDAKEALNSCNNTEIEGRAI 526
Score = 162 (62.1 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 44/155 (28%), Positives = 82/155 (52%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S +L V +L + ++ L +LF + S+++ ++ + R GY +V + A +A AL
Sbjct: 458 SKTLIVNNLSYAASEETLQELFKK---ATSIKMPQN-NQGRPKGYAFVEFPTAEDAKEAL 513
Query: 99 DELNFTPLNGKPIRIMYS---YRDPTIRKSGAGN-----IFIKNLDKSIDNKALHDTFST 150
+ N T + G+ IR+ +S ++ + G N +F++ L + + L ++F
Sbjct: 514 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE- 572
Query: 151 FGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184
G+I S ++ TD G S+G+GFV F + E AK+A
Sbjct: 573 -GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAA 605
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 253 (94.1 bits), Expect = 9.4e-19, P = 9.4e-19
Identities = 84/370 (22%), Positives = 178/370 (48%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SL+V +L + + +L + +++V ++ S +GYV++ +A + +AL +
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVS-EVRIGSSKRFGYVDFLSAEDMDKAL-Q 339
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKS----GAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LN L G I++ + +++++ A +F+KNL + + + F N L
Sbjct: 340 LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALE 396
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
++ + G S+G +++F E A+ A+++ G ++ + + + K ++ES
Sbjct: 397 VRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGG 456
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+ + V NLS +E+ L+++F + TS + ++ G+ K + FV F +DA
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKE 513
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYER-EMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++ + N + + + + + +++ M +G F Q K L+V+ L +
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVRGLSEDT 564
Query: 334 SDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+++ L+E F G+I S +++ D + G S+G GFV FS+ E+A A M + +
Sbjct: 565 TEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 621
Query: 393 YVALAQRKEE 402
+ A+ K E
Sbjct: 622 TLDFAKPKGE 631
Score = 185 (70.2 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 53/187 (28%), Positives = 96/187 (51%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
+++VKNL+ T ++L+ EF + V G SK FG+V+F +D ++++ L
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-L 340
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGKK +G E ++E K K ++SLKE + + L+VKNL +++D++K
Sbjct: 341 NGKKL------MG-----LEIKLE-KAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 388
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+F +++ + G S+G ++ F T EA KAL E G V + + +
Sbjct: 389 NVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGE 445
Query: 400 KEERRAR 406
K ++ ++
Sbjct: 446 KSQQESQ 452
Score = 183 (69.5 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 64/266 (24%), Positives = 124/266 (46%)
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
+ A ++F+KNL + D + L F + +V+ +G S+ +G+V F + E A
Sbjct: 278 ASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA 337
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+ +LNG L ++ + K+ + + ++VKNL TED++K +F E +
Sbjct: 338 L-QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF-ENAL 395
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
++ + +G SK ++ F +A +++E G + D + + +K ++E +
Sbjct: 396 --EVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ- 452
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRG 363
KG E+ K L V NL + S++ L+ELF + +I + + P G +
Sbjct: 453 KGGGERESK---------TLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFV 503
Query: 364 SGFVAFSTAEEASKAL--TEMNGKMV 387
F A+EA + TE+ G+ +
Sbjct: 504 E-FPTAEDAKEALNSCNNTEIEGRAI 528
Score = 162 (62.1 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 44/155 (28%), Positives = 82/155 (52%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S +L V +L + ++ L +LF + S+++ ++ + R GY +V + A +A AL
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKK---ATSIKMPQN-NQGRPKGYAFVEFPTAEDAKEAL 515
Query: 99 DELNFTPLNGKPIRIMYS---YRDPTIRKSGAGN-----IFIKNLDKSIDNKALHDTFST 150
+ N T + G+ IR+ +S ++ + G N +F++ L + + L ++F
Sbjct: 516 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE- 574
Query: 151 FGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184
G+I S ++ TD G S+G+GFV F + E AK+A
Sbjct: 575 -GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 38/135 (28%), Positives = 69/135 (51%)
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
+D D+ E + ++ +D++ V +A K ++EM K E K+T +L+V
Sbjct: 227 EDEDEEDEDDEEEDEEESEDEK-PVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFV 285
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL + ++L+ EF + +V G S+ G+V F +AE+ KAL ++NGK
Sbjct: 286 KNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QLNGKK 344
Query: 387 VVSKPLYVALAQRKE 401
++ + + A+ KE
Sbjct: 345 LMGLEIKLEKAKSKE 359
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 253 (94.1 bits), Expect = 9.5e-19, P = 9.5e-19
Identities = 84/370 (22%), Positives = 178/370 (48%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SL+V +L + + +L + +++V ++ S +GYV++ +A + +AL +
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVS-EVRIGSSKRFGYVDFLSAEDMDKAL-Q 339
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKS----GAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LN L G I++ + +++++ A +F+KNL + + + F N L
Sbjct: 340 LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALE 396
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
++ + G S+G +++F E A+ A+++ G ++ + + + K ++ES
Sbjct: 397 VRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGG 456
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+ + V NLS +E+ L+++F + TS + ++ G+ K + FV F +DA
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKE 513
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYER-EMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++ + N + + + + + +++ M +G F Q K L+V+ L +
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVRGLSEDT 564
Query: 334 SDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+++ L+E F G+I S +++ D + G S+G GFV FS+ E+A A M + +
Sbjct: 565 TEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 621
Query: 393 YVALAQRKEE 402
+ A+ K E
Sbjct: 622 TLDFAKPKGE 631
Score = 185 (70.2 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 53/187 (28%), Positives = 96/187 (51%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
+++VKNL+ T ++L+ EF + V G SK FG+V+F +D ++++ L
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-L 340
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGKK +G E ++E K K ++SLKE + + L+VKNL +++D++K
Sbjct: 341 NGKKL------MG-----LEIKLE-KAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 388
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+F +++ + G S+G ++ F T EA KAL E G V + + +
Sbjct: 389 NVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGE 445
Query: 400 KEERRAR 406
K ++ ++
Sbjct: 446 KSQQESQ 452
Score = 183 (69.5 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 64/266 (24%), Positives = 124/266 (46%)
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
+ A ++F+KNL + D + L F + +V+ +G S+ +G+V F + E A
Sbjct: 278 ASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA 337
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+ +LNG L ++ + K+ + + ++VKNL TED++K +F E +
Sbjct: 338 L-QLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVF-ENAL 395
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
++ + +G SK ++ F +A +++E G + D + + +K ++E +
Sbjct: 396 --EVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ- 452
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRG 363
KG E+ K L V NL + S++ L+ELF + +I + + P G +
Sbjct: 453 KGGGERESK---------TLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFV 503
Query: 364 SGFVAFSTAEEASKAL--TEMNGKMV 387
F A+EA + TE+ G+ +
Sbjct: 504 E-FPTAEDAKEALNSCNNTEIEGRAI 528
Score = 162 (62.1 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 44/155 (28%), Positives = 82/155 (52%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S +L V +L + ++ L +LF + S+++ ++ + R GY +V + A +A AL
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKK---ATSIKMPQN-NQGRPKGYAFVEFPTAEDAKEAL 515
Query: 99 DELNFTPLNGKPIRIMYS---YRDPTIRKSGAGN-----IFIKNLDKSIDNKALHDTFST 150
+ N T + G+ IR+ +S ++ + G N +F++ L + + L ++F
Sbjct: 516 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE- 574
Query: 151 FGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184
G+I S ++ TD G S+G+GFV F + E AK+A
Sbjct: 575 -GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 38/135 (28%), Positives = 69/135 (51%)
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
+D D+ E + ++ +D++ V +A K ++EM K E K+T +L+V
Sbjct: 227 EDEDEEDEDDEEEDEEESEDEK-PVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFV 285
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL + ++L+ EF + +V G S+ G+V F +AE+ KAL ++NGK
Sbjct: 286 KNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QLNGKK 344
Query: 387 VVSKPLYVALAQRKE 401
++ + + A+ KE
Sbjct: 345 LMGLEIKLEKAKSKE 359
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 245 (91.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 73/275 (26%), Positives = 136/275 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 190 GMLLNDKQVFVG----PFLRKQERES-TADKTRFN----NVYVKNLSETTTEDDLKKIFG 240
G + K+V V P +K++ S T T+ + +V+V +LS T +D+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 241 EFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK-- 293
FG I+ V++D A GKSK +GFV+F + DA +++ + G+ ++ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 294 AQKK-YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
A K YE + + +++ + +++ +Y + +++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
V D +G FV F++ E A+ A+ +NG +
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 203 (76.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 70/285 (24%), Positives = 128/285 (44%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V + A AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAA 65
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN-------------IFIKNLDKSIDNKALHDT 147
+N + GK +++ ++ + +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----- 201
F+ FG I +V D + G+S+GYGFV F N+ A++AI ++ G L +Q+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 202 PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAV 250
P K ES + ++ V Y ++ TE +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
D K + FV F+ + AA ++ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 191 (72.3 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ + S + + D F +++V +L I+ + +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 400 K 400
K
Sbjct: 185 K 185
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 245 (91.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 68/262 (25%), Positives = 125/262 (47%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + F G SCK+ D+ G Y FV+F A +++ +N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + K+V V ++ D + +V+V +LS T DD++ F FG I+
Sbjct: 69 GRKIMGKEVKVNWATSPSSQKK--DTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDAR 126
Query: 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGKAQK-KYEREME 303
V++D A GKSK +GFV+F + DA +++ + G+ ++ W K K E
Sbjct: 127 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETN 186
Query: 304 LKG-KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
K F++ + +++ +Y + +++ +++ FS FG I +V D +
Sbjct: 187 TKHLSFDEVVNQSSPS--NCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD-----K 239
Query: 363 GSGFVAFSTAEEASKALTEMNG 384
G FV F++ E A+ A+ +NG
Sbjct: 240 GYSFVRFNSHESAAHAIVSVNG 261
Score = 223 (83.6 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 72/275 (26%), Positives = 125/275 (45%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF Q+G S ++ D T + Y +V + A +L
Sbjct: 9 TLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLAA 66
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + GK +++ ++ P+ +K N +F+ +L I + F+ FG I
Sbjct: 67 MNGRKIMGKEVKVNWA-TSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDA 125
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-----PFLRKQERES 211
+V D + G+S+GYGFV F N+ A++AI ++ G L +Q+ P K E+
Sbjct: 126 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYET 185
Query: 212 TADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
F+ V Y ++ TE +++ F FG I V D K
Sbjct: 186 NTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD-----KG 240
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
+ FV F+ + AA ++ ++NG + + Y GK
Sbjct: 241 YSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGK 275
Score = 186 (70.5 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 55/188 (29%), Positives = 94/188 (50%)
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
D + +YV NLS TE + ++FG+ G S ++ D G + FV F + AA
Sbjct: 3 DDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAA 61
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
S+ A+NG+K KE V A ++ K+T++ F +++V +L I
Sbjct: 62 ASLAAMNGRKIMGKEVKVNWATSPSSQK-----------KDTSNHF---HVFVGDLSPEI 107
Query: 334 SDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D ++ F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + +
Sbjct: 108 TTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 167
Query: 393 YVALAQRK 400
A RK
Sbjct: 168 RTNWATRK 175
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 245 (91.3 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 73/275 (26%), Positives = 136/275 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 190 GMLLNDKQVFVG----PFLRKQERES-TADKTRFN----NVYVKNLSETTTEDDLKKIFG 240
G + K+V V P +K++ S T T+ + +V+V +LS T +D+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 241 EFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK-- 293
FG I+ V++D A GKSK +GFV+F + DA +++ + G+ ++ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 294 AQKK-YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
A K YE + + +++ + +++ +Y + +++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
V D +G FV F++ E A+ A+ +NG +
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 203 (76.5 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 70/285 (24%), Positives = 128/285 (44%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V + A AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAA 65
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN-------------IFIKNLDKSIDNKALHDT 147
+N + GK +++ ++ + +K + + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----- 201
F+ FG I +V D + G+S+GYGFV F N+ A++AI ++ G L +Q+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 202 PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAV 250
P K ES + ++ V Y ++ TE +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
D K + FV F+ + AA ++ ++NG + + Y GK
Sbjct: 246 FPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 191 (72.3 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ + S + + D F +++V +L I+ + +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 400 K 400
K
Sbjct: 185 K 185
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 243 (90.6 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 77/300 (25%), Positives = 144/300 (48%)
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKS 183
S +++I +L + +D + F+ G S KV + L GQS GYGF++F + A+
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 184 AIDKLNGMLL-NDKQVFVGPFLRKQERESTADKTRF------NNVYVKNLSETTTEDDLK 236
+ NG + + +Q F R ++ A + RF + ++V +L+ T+ L
Sbjct: 117 VLQTYNGAPMPSTEQTF-----RLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLS 171
Query: 237 KIFGE-FGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
F +G + V+ D G+SK +GFV F D ++ R++ +NG+ + +G A
Sbjct: 172 DTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA 231
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLN--LYVKNLDDSISDDKLKELFSEFGTITSCK 352
K M+ ++ + A + N ++V LD +++DD+LK +F +FG + K
Sbjct: 232 ANKNALPMQ-PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVK 290
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412
+ P G + GFV ++ A AL+ +NG + + + L+ + + QAQ++
Sbjct: 291 I---PPG--KRCGFVQYANKASAEHALSVLNGTQLGGQS--IRLSWGRSPNKQSDQAQWN 343
Score = 210 (79.0 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 53/191 (27%), Positives = 98/191 (51%)
Query: 24 GIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 83
G N G D + SL++GDL ++++ + +F Q G+ S +V R+ T +S GY
Sbjct: 49 GSQNPGSASDVK-----SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGY 103
Query: 84 GYVNYNAAHEATRALDELNFTPLNG--KPIRIMYSYR---DPTIRKSGAGN-IFIKNLDK 137
G++ + + A R L N P+ + R+ ++ + + G + IF+ +L
Sbjct: 104 GFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAP 163
Query: 138 SIDNKALHDTF-STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
+ + L DTF + +G++ KV D + G+S+GYGFV+F +E A+ ++NG +
Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCST 223
Query: 196 KQVFVGPFLRK 206
+ + +GP K
Sbjct: 224 RPMRIGPAANK 234
>SGD|S000001057 [details] [associations]
symbol:MIP6 "Putative RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005643 "nuclear pore" evidence=IPI]
[GO:0006406 "mRNA export from nucleus" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001057 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723
GO:GO:0006406 EMBL:U10400 PIR:S46788 RefSeq:NP_011879.1
ProteinModelPortal:P38760 SMR:P38760 DIP:DIP-6647N IntAct:P38760
MINT:MINT-644353 STRING:P38760 EnsemblFungi:YHR015W GeneID:856408
KEGG:sce:YHR015W CYGD:YHR015w eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
NextBio:981953 Genevestigator:P38760 GermOnline:YHR015W
Uniprot:P38760
Length = 659
Score = 249 (92.7 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 55/174 (31%), Positives = 93/174 (53%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SL++G+L +V + L +F + S +VCRD T++SLGYGY+N+ ++A A
Sbjct: 110 TNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESAR 169
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNIL 155
E N+T G+ ++IM S ++ RK+ N+F NL + + ++ + +GN+L
Sbjct: 170 KEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVL 229
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
SC L + + GFV FDN+ SA++ I K N ++ G K+ R
Sbjct: 230 SCL-----LERRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKEVR 278
Score = 174 (66.3 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 67/293 (22%), Positives = 128/293 (43%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESA 181
+ S ++FI NL ++ + L F + + S KV D L + S GYG++ F ++ A
Sbjct: 106 KTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDA 165
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQE-RESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
+SA + N + ++V + P ++ R++ F+N+ ++N TT L I
Sbjct: 166 ESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMI-- 223
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG-------K 293
E+G + S + R K GFV FD+ A ++ N ++F + G +
Sbjct: 224 EYGNVLSCLLER-----RKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKEVR 278
Query: 294 AQKKYEREMELKGK---FEQSL---KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
+ ++ + ++ G E L +D + VKNL + +++ + FS G
Sbjct: 279 TRPEFTKRKKMIGSDIVIEDELLASNNLSDNARSKTILVKNLPSDTTQEEVLDYFSTIGP 338
Query: 348 ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
I S + + + FV + EE+ KA +N + + ++V + K
Sbjct: 339 IKSVFIS-EKQANTPHKAFVTYKNEEESKKAQKCLNKTIFKNHTIWVGPGKDK 390
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 242 (90.2 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 70/271 (25%), Positives = 131/271 (48%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNE 178
PT + +++I +L +D L F G ++S KV + GQS GYGF++F +
Sbjct: 76 PTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSH 135
Query: 179 ESAKSAIDKLNGMLL-NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+A++ + NG L+ N +Q F + E D + ++V +L+ T+ L++
Sbjct: 136 AAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAE-HTIFVGDLAADVTDYILQE 194
Query: 238 IFGE-FGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
F + + V+ D G+SK +GFV F D + R++ +NG + +G A
Sbjct: 195 TFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAA 254
Query: 296 KKYEREMELKGKFE--QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
K K ++ Q+ + +D ++V LD +++++ L+++FS +G + K+
Sbjct: 255 NKKPVGTPQKATYQNPQATQGESDP-NNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKI 313
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
+ + GFV F T A +AL+ +NG
Sbjct: 314 VA-----GKRCGFVQFGTRASAEQALSSLNG 339
Score = 213 (80.0 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 55/186 (29%), Positives = 98/186 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SL++GDL ++++ L F G++VS +V R+ T +S GYG++ + + A L
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 101 LNFT--PLNGKPIRIMYSYRDPTIRK--SGAGNIFIKNLDKSIDNKALHDTF-STFGNIL 155
N T P + R+ ++ R+ S IF+ +L + + L +TF S + ++
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVR 204
Query: 156 SCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
KV TD + G+S+GYGFV+F +E A+ ++NG+L + + + +GP K+ T
Sbjct: 205 GAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKP-VGTPQ 263
Query: 215 KTRFNN 220
K + N
Sbjct: 264 KATYQN 269
Score = 173 (66.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 55/188 (29%), Positives = 86/188 (45%)
Query: 30 GVGDARQ-FVSTSLYVGDLDLSVNDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVN 87
G G+ R +++VGDL V D L + F + V +V D T RS GYG+V
Sbjct: 165 GAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVK 224
Query: 88 YNAAHEATRALDELNFTPLNGKPIRI-------------MYSYRDP--TIRKSGAGN--I 130
+ E RA+ E+N + +P+RI +Y++P T +S N I
Sbjct: 225 FADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTI 284
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
F+ LD ++ + L FS +G ++ K+ + GFVQF SA+ A+ LNG
Sbjct: 285 FVGGLDPTVAEEHLRQVFSPYGELVHVKIVA-----GKRCGFVQFGTRASAEQALSSLNG 339
Query: 191 MLLNDKQV 198
L + +
Sbjct: 340 TQLGGQSI 347
Score = 142 (55.0 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 48/193 (24%), Positives = 91/193 (47%)
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPD 270
T + ++++ +L E+ L F G + S V+R+ G+S+ +GF+ F
Sbjct: 77 TGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHA 136
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++ NG + E + + G E+ ++A+ ++V +L
Sbjct: 137 AAETILQTYNGTLMPNVE-------QNFRMNWASLGAGERR-DDSAEH----TIFVGDLA 184
Query: 331 DSISDDKLKELF-SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
++D L+E F S + ++ KV+ D G S+G GFV F+ E +A+TEMNG +
Sbjct: 185 ADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCS 244
Query: 389 SKPLYVALAQRKE 401
++P+ + A K+
Sbjct: 245 TRPMRIGPAANKK 257
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 161 (61.7 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 48/181 (26%), Positives = 86/181 (47%)
Query: 105 PLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL 164
P+NG I + T++ A +FI + ++++ K L F FG I V D
Sbjct: 114 PMNGSE-SISIHPENGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRY 172
Query: 165 -GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRFNNVY 222
G +G F+ + ESA I N L++++ G Q + + ++ + ++
Sbjct: 173 TGMHKGCAFLTYCARESA---IKAQNA--LHEQKTLPGMTRPIQVKPADSESRGEDRKLF 227
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
V L++ TE+D+ ++F +G+I V+R DG SK FV F +A ++ AL+G
Sbjct: 228 VGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGS 287
Query: 283 K 283
+
Sbjct: 288 Q 288
Score = 149 (57.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 46/169 (27%), Positives = 81/169 (47%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+++ + E DLK +F +FG I V++D G K F+ + + A ++ AL
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K G R +++K +S E D+ L+V L+ +++ +
Sbjct: 198 HEQKT-----LPGMT-----RPIQVKPADSESRGE--DR----KLFVGMLNKQQTEEDVY 241
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LF +G I C V+R P+G S+G FV FST EA A++ ++G +
Sbjct: 242 RLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTM 290
Score = 146 (56.5 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 43/152 (28%), Positives = 71/152 (46%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA---AHEATRAL 98
L++G + ++ + L LF Q G++ + V +D T G ++ Y A A +A AL
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R +F+ L+K + ++ F +G I C
Sbjct: 198 HEQKTLPGMTRPIQVKPA--DSESRGEDR-KLFVGMLNKQQTEEDVYRLFEPYGVIEECT 254
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
V G S+G FV+F A+SAI L+G
Sbjct: 255 VLRGPDGNSKGCAFVKFSTHAEAQSAISALHG 286
Score = 133 (51.9 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 26/81 (32%), Positives = 51/81 (62%)
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKC 260
P + +Q+++ + N+++ +L + +++L ++F FG + S+ V D A +SKC
Sbjct: 495 PQVIQQQQQREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKC 554
Query: 261 FGFVNFDDPDDAARSVEALNG 281
FGFV+FD+P A +++A+NG
Sbjct: 555 FGFVSFDNPASAQAAIQAMNG 575
Score = 132 (51.5 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFV 367
+Q + + EG NL++ +L D++L ++F FGT+ S KV D S+ GFV
Sbjct: 499 QQQQQREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFV 558
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+F A A+ MNG + K L V L + K+ R
Sbjct: 559 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDASR 595
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
N+FI +L + + L F FG ++S KV D + QS+ +GFV FDN SA++AI
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 573 MNGFQIGMKRLKV 585
>POMBASE|SPAC343.07 [details] [associations]
symbol:mug28 "RNA-binding protein Mug28" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005619 "ascospore wall" evidence=IDA] [GO:0005628 "prospore
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0031321
"ascospore-type prospore assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC343.07 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005628 GO:GO:0005619 eggNOG:COG0724
GO:GO:0031321 PIR:T38656 RefSeq:NP_593427.1 HSSP:Q60900
ProteinModelPortal:Q9UT83 STRING:Q9UT83 EnsemblFungi:SPAC343.07.1
GeneID:2543165 KEGG:spo:SPAC343.07 OMA:YTHIVER OrthoDB:EOG447K4G
NextBio:20804191 Uniprot:Q9UT83
Length = 609
Score = 200 (75.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 45/94 (47%), Positives = 65/94 (69%)
Query: 323 NLYVKNLDDSI--SDDKLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKAL 379
NL+VKNLDD+I + +L+ELFS+FG I SC + P+ IS+G GFV+FS EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+NG + K L+V A+++E+R+ RL A FSQ
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
Score = 157 (60.3 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 129 NIFIKNLDKSI--DNKALHDTFSTFGNILSCKVAT-DSLGQSRGYGFVQFDNEESAKSAI 185
N+F+KNLD +I + + L + FS FG I SC +A+ S S+GYGFV F + A AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERE 210
+ LNG+L K++FV ++++R+
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 139 (54.0 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 33/95 (34%), Positives = 53/95 (55%)
Query: 220 NVYVKNLSETTTED--DLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSV 276
N++VKNL + + L+++F +FG I S T + SK +GFV+F P +A +++
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
LNG F K +V A+K+ +R+ L F QS
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQS 514
Score = 89 (36.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGN-----ILSCKV--ATDSLGQSRGYGFVQFDNEESA 181
+I++ NL + + LH+ F FGN +LS K +TDS + + F+ F+N+ SA
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTL-FAFITFENKCSA 79
Query: 182 KSAIDKLNG 190
+AI LNG
Sbjct: 80 DNAIASLNG 88
Score = 73 (30.8 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 22/106 (20%), Positives = 48/106 (45%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQ-----VVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
S+YVG+L + S L++LF G ++S + + ++ + ++ + A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 96 RALDELNFTPLNGKPIRIMYSY---RDPTIRKSGAGNIFIKNLDKS 138
A+ LN + G +++ Y++ R ++G I N +K+
Sbjct: 81 NAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKA 126
Score = 49 (22.3 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRG-YGFVQFDNEESAKSAIDKL 188
I I NL + L++ FS G+IL + S+ + Y V ES I+K
Sbjct: 272 IGILNLPLKVSPVELYNEFSNHGHILGVAI-NQSINEDMTHYAEVAVSTYESCIEIIEKF 330
Query: 189 NGMLLNDK--QVFV 200
+ + Q+F+
Sbjct: 331 HAIAYEGSILQLFI 344
Score = 43 (20.2 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS 76
+L L V+ +LY+ F+ G ++ V + + ++
Sbjct: 276 NLPLKVSPVELYNEFSNHGHILGVAINQSIN 306
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 57/194 (29%), Positives = 90/194 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
++V + E DLK +F +FG I V++D G K F+ + D A ++ AL
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K G A R +++K +S + D+ L+V L+ S++ +
Sbjct: 107 HEQKT-----LPGMA-----RPIQVKPADSES-RGGRDR----KLFVGMLNKQQSEEDVL 151
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVAL 396
LF FG I C V+R P+G S+G FV FS+ EA A+ ++G + S L V
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 211
Query: 397 AQRKEERRARLQAQ 410
A +ER R Q
Sbjct: 212 ADTDKERTLRRMQQ 225
Score = 155 (59.6 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 46/166 (27%), Positives = 78/166 (46%)
Query: 29 GGVGDA-RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
GG D + + L+VG + ++++ L LF Q G++ + V +D T G ++
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 92
Query: 88 Y---NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKAL 144
Y ++A +A AL E P +PI++ + D R +F+ L+K + +
Sbjct: 93 YCARDSAIKAQTALHEQKTLPGMARPIQVKPA--DSESRGGRDRKLFVGMLNKQQSEEDV 150
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
F FG I C V G S+G FV+F + A++AI L+G
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 154 (59.3 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 43/159 (27%), Positives = 77/159 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
+F+ + +++D K L F FG I V D G +G F+ + +SA A
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKA---- 102
Query: 189 NGMLLNDKQVFVG---PF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
L++++ G P ++ + ES + R ++V L++ +E+D+ ++F FG+
Sbjct: 103 -QTALHEQKTLPGMARPIQVKPADSESRGGRDR--KLFVGMLNKQQSEEDVLRLFQPFGV 159
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
I V+R DG SK FV F +A ++ AL+G +
Sbjct: 160 IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 198
Score = 135 (52.6 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKC 260
P L++Q+RE N+++ +L + + +L ++F FG I S+ V D A +SKC
Sbjct: 387 PLLQQQQREGPEGC----NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKC 442
Query: 261 FGFVNFDDPDDAARSVEALNG 281
FGFV+FD+P A +++A+NG
Sbjct: 443 FGFVSFDNPASAQTAIQAMNG 463
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
N+FI +L + + L F FGNI+S KV D + QS+ +GFV FDN SA++AI
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQA 460
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 461 MNGFQIGMKRLKV 473
Score = 122 (48.0 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKA 378
EG NL++ +L D +L ++F FG I S KV D S+ GFV+F A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTA 457
Query: 379 LTEMNGKMVVSKPLYVALAQRKE 401
+ MNG + K L V L + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 234 (87.4 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 77/281 (27%), Positives = 131/281 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT---DS--LGQSRG-----------YGFV 173
+++ NL + + + FS G SCK+ T DS + S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+F A +A+ +NG + K+V V ++ D + +V+V +LS T +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTE 128
Query: 234 DLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE---- 288
D+K F FG I+ V++D A GKSK +GFV+F + DA ++ + G+ ++
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 289 WYVGKAQK-KYEREMELKG-KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
W K K +E K +FE + +++ K +Y + ++D +++ FS FG
Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I +V + +G FV FST E A+ A+ +NG +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 185 (70.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSI 139
Y +V + +A AL +N + GK +++ ++ P+ +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F+ FG I +V D + G+S+GYGFV F N+ A++AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 199 FVG-----PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEF 242
P K +E+ + RF +V Y ++ T+ +++ F F
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
G I V + K + FV F + AA ++ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 142 (55.0 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG------IITST------------AVMRDADGKSKCFG 262
+YV NLS TE + ++F + G +IT +V++ CF
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF- 69
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
V F + DAA ++ A+NG+K KE V A ++ K+T++ F
Sbjct: 70 -VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+++V +L I+ + +K F+ FG I+ +V++D G S+G GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 382 MNGKMVVSKPLYVALAQRK 400
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 135 (52.6 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + + F G++ RV +D++T +S GYG+V++ +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD-KSIDNKALHDTFSTF-GNILSCKV 159
L G+ IR ++ R P KS K L + + N++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASG-- 232
Query: 160 ATDSL--------GQ--------SRGYGFVQFDNEESAKSAIDKLNG 190
TD L GQ +GY FV+F ESA AI +NG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 234 (87.4 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 77/281 (27%), Positives = 131/281 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT---DS--LGQSRG-----------YGFV 173
+++ NL + + + FS G SCK+ T DS + S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+F A +A+ +NG + K+V V ++ D + +V+V +LS T +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTE 128
Query: 234 DLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE---- 288
D+K F FG I+ V++D A GKSK +GFV+F + DA ++ + G+ ++
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 289 WYVGKAQK-KYEREMELKG-KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
W K K +E K +FE + +++ K +Y + ++D +++ FS FG
Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I +V + +G FV FST E A+ A+ +NG +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 185 (70.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSI 139
Y +V + +A AL +N + GK +++ ++ P+ +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F+ FG I +V D + G+S+GYGFV F N+ A++AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 199 FVG-----PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEF 242
P K +E+ + RF +V Y ++ T+ +++ F F
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
G I V + K + FV F + AA ++ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 142 (55.0 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG------IITST------------AVMRDADGKSKCFG 262
+YV NLS TE + ++F + G +IT +V++ CF
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF- 69
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
V F + DAA ++ A+NG+K KE V A ++ K+T++ F
Sbjct: 70 -VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+++V +L I+ + +K F+ FG I+ +V++D G S+G GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 382 MNGKMVVSKPLYVALAQRK 400
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 135 (52.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + + F G++ RV +D++T +S GYG+V++ +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD-KSIDNKALHDTFSTF-GNILSCKV 159
L G+ IR ++ R P KS K L + + N++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASG-- 232
Query: 160 ATDSL--------GQ--------SRGYGFVQFDNEESAKSAIDKLNG 190
TD L GQ +GY FV+F ESA AI +NG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 235 (87.8 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 76/281 (27%), Positives = 131/281 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT---DS--LGQSRG-----------YGFV 173
+++ NL + + + FS G SCK+ T DS + S G Y FV
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+F A +A+ +NG + K+V V ++ D + +V+V +LS T +
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTE 127
Query: 234 DLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE---- 288
D+K F FG I+ V++D A GKSK +GFV+F + DA ++ + G+ ++
Sbjct: 128 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 187
Query: 289 WYVGK--AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
W K A K + + +FE + +++ K +Y + ++D +++ FS FG
Sbjct: 188 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFG 245
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I +V + +G FV FST E A+ A+ +NG +
Sbjct: 246 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 281
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSI 139
Y +V + +A AL +N + GK +++ ++ P+ +K N +F+ +L I
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 124
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F+ FG I +V D + G+S+GYGFV F N+ A++AI + G L +Q+
Sbjct: 125 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 184
Query: 199 FVG-----PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEF 242
P K +E+ + RF +V Y ++ T+ +++ F F
Sbjct: 185 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 244
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
G I V + K + FV F + AA ++ ++NG + + Y GK
Sbjct: 245 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 292
Score = 142 (55.0 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG------IITST------------AVMRDADGKSKCFG 262
+YV NLS TE + ++F + G +IT +V++ CF
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF- 68
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
V F + DAA ++ A+NG+K KE V A ++ K+T++ F
Sbjct: 69 -VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 113
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+++V +L I+ + +K F+ FG I+ +V++D G S+G GFV+F +A A+
Sbjct: 114 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 173
Query: 382 MNGKMVVSKPLYVALAQRK 400
M G+ + + + A RK
Sbjct: 174 MGGQWLGGRQIRTNWATRK 192
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 47/166 (28%), Positives = 76/166 (45%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + + F G++ RV +D++T +S GYG+V++ +A A+ +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF-GNILSCKVA 160
L G+ IR ++ R P KS N + + + N++ + + G I S
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASG--L 232
Query: 161 TDSL--------GQ--------SRGYGFVQFDNEESAKSAIDKLNG 190
TD L GQ +GY FV+F ESA AI +NG
Sbjct: 233 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 278
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 166 (63.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 57/194 (29%), Positives = 90/194 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
++V + E DLK +F +FG I V++D G K F+ + D A ++ AL
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K G A R +++K +S + D+ L+V L+ S++ +
Sbjct: 107 HEQKT-----LPGMA-----RPIQVKPADSES-RGGRDR----KLFVGMLNKQQSEEDVL 151
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVAL 396
LF FG I C V+R P+G S+G FV FS+ EA A+ ++G + S L V
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 211
Query: 397 AQRKEERRARLQAQ 410
A +ER R Q
Sbjct: 212 ADTDKERTLRRMQQ 225
Score = 153 (58.9 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 46/166 (27%), Positives = 77/166 (46%)
Query: 29 GGVGDA-RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
GG D + + L+VG + +++ L LF Q G++ + V +D T G ++
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 92
Query: 88 Y---NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKAL 144
Y ++A +A AL E P +PI++ + D R +F+ L+K + +
Sbjct: 93 YCARDSAIKAQTALHEQKTLPGMARPIQVKPA--DSESRGGRDRKLFVGMLNKQQSEEDV 150
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
F FG I C V G S+G FV+F + A++AI L+G
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 152 (58.6 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 43/159 (27%), Positives = 76/159 (47%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
+F+ + + +D K L F FG I V D G +G F+ + +SA A
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKA---- 102
Query: 189 NGMLLNDKQVFVG---PF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
L++++ G P ++ + ES + R ++V L++ +E+D+ ++F FG+
Sbjct: 103 -QTALHEQKTLPGMARPIQVKPADSESRGGRDR--KLFVGMLNKQQSEEDVLRLFQPFGV 159
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
I V+R DG SK FV F +A ++ AL+G +
Sbjct: 160 IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 198
Score = 135 (52.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKC 260
P L++Q+RE N+++ +L + + +L ++F FG I S+ V D A +SKC
Sbjct: 387 PLLQQQQREGPEGC----NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKC 442
Query: 261 FGFVNFDDPDDAARSVEALNG 281
FGFV+FD+P A +++A+NG
Sbjct: 443 FGFVSFDNPASAQAAIQAMNG 463
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
N+FI +L + + L F FGNI+S KV D + QS+ +GFV FDN SA++AI
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 460
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 461 MNGFQIGMKRLKV 473
Score = 122 (48.0 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKA 378
EG NL++ +L D +L ++F FG I S KV D S+ GFV+F A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAA 457
Query: 379 LTEMNGKMVVSKPLYVALAQRKE 401
+ MNG + K L V L + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 235 (87.8 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 76/281 (27%), Positives = 131/281 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT---DS--LGQSRG-----------YGFV 173
+++ NL + + + FS G SCK+ T DS + S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+F A +A+ +NG + K+V V ++ D + +V+V +LS T +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTE 128
Query: 234 DLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE---- 288
D+K F FG I+ V++D A GKSK +GFV+F + DA ++ + G+ ++
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 289 WYVGK--AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
W K A K + + +FE + +++ K +Y + ++D +++ FS FG
Sbjct: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I +V + +G FV FST E A+ A+ +NG +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSI 139
Y +V + +A AL +N + GK +++ ++ P+ +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F+ FG I +V D + G+S+GYGFV F N+ A++AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 199 FVG-----PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEF 242
P K +E+ + RF +V Y ++ T+ +++ F F
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
G I V + K + FV F + AA ++ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 142 (55.0 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG------IITST------------AVMRDADGKSKCFG 262
+YV NLS TE + ++F + G +IT +V++ CF
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF- 69
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
V F + DAA ++ A+NG+K KE V A ++ K+T++ F
Sbjct: 70 -VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+++V +L I+ + +K F+ FG I+ +V++D G S+G GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 382 MNGKMVVSKPLYVALAQRK 400
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 47/166 (28%), Positives = 76/166 (45%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + + F G++ RV +D++T +S GYG+V++ +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF-GNILSCKVA 160
L G+ IR ++ R P KS N + + + N++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASG--L 233
Query: 161 TDSL--------GQ--------SRGYGFVQFDNEESAKSAIDKLNG 190
TD L GQ +GY FV+F ESA AI +NG
Sbjct: 234 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 235 (87.8 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 76/281 (27%), Positives = 131/281 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT---DS--LGQSRG-----------YGFV 173
+++ NL + + + FS G SCK+ T DS + S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+F A +A+ +NG + K+V V ++ D + +V+V +LS T +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTE 128
Query: 234 DLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE---- 288
D+K F FG I+ V++D A GKSK +GFV+F + DA ++ + G+ ++
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 289 WYVGK--AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
W K A K + + +FE + +++ K +Y + ++D +++ FS FG
Sbjct: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I +V + +G FV FST E A+ A+ +NG +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSI 139
Y +V + +A AL +N + GK +++ ++ P+ +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F+ FG I +V D + G+S+GYGFV F N+ A++AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 199 FVG-----PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEF 242
P K +E+ + RF +V Y ++ T+ +++ F F
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
G I V + K + FV F + AA ++ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 142 (55.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG------IITST------------AVMRDADGKSKCFG 262
+YV NLS TE + ++F + G +IT +V++ CF
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF- 69
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
V F + DAA ++ A+NG+K KE V A ++ K+T++ F
Sbjct: 70 -VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+++V +L I+ + +K F+ FG I+ +V++D G S+G GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 382 MNGKMVVSKPLYVALAQRK 400
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 139 (54.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 47/166 (28%), Positives = 76/166 (45%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + + F G++ RV +D++T +S GYG+V++ +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF-GNILSCKVA 160
L G+ IR ++ R P KS N + + + N++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASG--L 233
Query: 161 TDSL--------GQ--------SRGYGFVQFDNEESAKSAIDKLNG 190
TD L GQ +GY FV+F ESA AI +NG
Sbjct: 234 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 235 (87.8 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 76/281 (27%), Positives = 131/281 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT---DS--LGQSRG-----------YGFV 173
+++ NL + + + FS G SCK+ T DS + S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+F A +A+ +NG + K+V V ++ D + +V+V +LS T +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTE 128
Query: 234 DLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE---- 288
D+K F FG I+ V++D A GKSK +GFV+F + DA ++ + G+ ++
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 289 WYVGK--AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
W K A K + + +FE + +++ K +Y + ++D +++ FS FG
Sbjct: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I +V + +G FV FST E A+ A+ +NG +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSI 139
Y +V + +A AL +N + GK +++ ++ P+ +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F+ FG I +V D + G+S+GYGFV F N+ A++AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 199 FVG-----PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEF 242
P K +E+ + RF +V Y ++ T+ +++ F F
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
G I V + K + FV F + AA ++ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 142 (55.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG------IITST------------AVMRDADGKSKCFG 262
+YV NLS TE + ++F + G +IT +V++ CF
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF- 69
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
V F + DAA ++ A+NG+K KE V A ++ K+T++ F
Sbjct: 70 -VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+++V +L I+ + +K F+ FG I+ +V++D G S+G GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 382 MNGKMVVSKPLYVALAQRK 400
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 139 (54.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 47/166 (28%), Positives = 76/166 (45%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + + F G++ RV +D++T +S GYG+V++ +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF-GNILSCKVA 160
L G+ IR ++ R P KS N + + + N++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASG--L 233
Query: 161 TDSL--------GQ--------SRGYGFVQFDNEESAKSAIDKLNG 190
TD L GQ +GY FV+F ESA AI +NG
Sbjct: 234 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 192 (72.6 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 40/116 (34%), Positives = 69/116 (59%)
Query: 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL 226
S GYGFV+F ++ A AI++LNG ++ K P L+ ++++ ++ N+Y+ L
Sbjct: 151 SLGYGFVKFSKKDEAAMAIEQLNGFEVDSK-----P-LKVSYAQASSSQSTHANLYINRL 204
Query: 227 SETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNG 281
T +LK++FG FG + T ++ D D G S+C GFV+F +A ++V ++NG
Sbjct: 205 EPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNG 260
Score = 191 (72.3 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 38/112 (33%), Positives = 63/112 (56%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGYG+V ++ EA A+++LN ++ KP+++ SY + +S N++I L+ +
Sbjct: 151 SLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKV--SYAQASSSQSTHANLYINRLEPHV 208
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
N L + F +FG+++ K+ TD G SR GFV F A A+ +NG
Sbjct: 209 TNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNG 260
Score = 191 (72.3 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 60/202 (29%), Positives = 97/202 (48%)
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM--RDADGKSKCFGFVNFDDPDD 271
D N+ V N+ ++ ++LK +F +FG I S ++ R DG +N ++ +
Sbjct: 77 DLDALTNLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNSNININSNNSNG 136
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREM---ELKGKFE---QSLK-----ETADKFE 320
+ + N + K KK E M +L G FE + LK ++ +
Sbjct: 137 SNSNNNNNNSNNNSSLGYGFVKFSKKDEAAMAIEQLNG-FEVDSKPLKVSYAQASSSQST 195
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKAL 379
NLY+ L+ +++ LKE+F FG + K++ DP+ G SR GFV FS EA KA+
Sbjct: 196 HANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAV 255
Query: 380 TEMNGKMVV--SKPLYVALAQR 399
+ MNG + S P+YV A +
Sbjct: 256 SSMNGANIPFQSTPIYVKFANQ 277
Score = 105 (42.0 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 29/120 (24%), Positives = 57/120 (47%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q +LY+ L+ V ++ L ++F G V+ ++ D T S G+V+++ EA
Sbjct: 193 QSTHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREAL 252
Query: 96 RALDELNFT--PLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
+A+ +N P PI + ++ + +G N I N + + +N +++ S F N
Sbjct: 253 KAVSSMNGANIPFQSTPIYVKFA-NQLSGNNNGNNNNNIINSNSNNNNN--NNSNSNFNN 309
Score = 68 (29.0 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 16/71 (22%), Positives = 37/71 (52%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
+++ NL ++I + L +LF+ FG I+ +++ + G + + + A+ +N
Sbjct: 454 IHISNLPNNIDETFLYKLFA-FGAISGVQLLNN------GQAIITYLDYQTVQNAINTLN 506
Query: 384 GKMVVSKPLYV 394
GK++ + L V
Sbjct: 507 GKIISGRSLKV 517
Score = 63 (27.2 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
T+L V ++ S++ ++L LF++ G++ S C+ + R+ G G N N
Sbjct: 82 TNLIVNNIPKSMDSNELKSLFDKFGEIES---CKIVFNRKKDGNGNSNIN 128
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 54/194 (27%), Positives = 88/194 (45%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+++ + E DLK IF +FG I V++D G K F+ + + A ++ AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K R +++K +S E D+ L+V L +D+ ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVAL 396
+F FG I C V+R P+G S+G FV F T EA A+ ++G + S L V
Sbjct: 113 RMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKF 172
Query: 397 AQRKEERRARLQAQ 410
A ++ER R Q
Sbjct: 173 ADTEKERGLRRMQQ 186
Score = 159 (61.0 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 43/152 (28%), Positives = 73/152 (48%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA---L 98
L++G + ++++ L +F Q G++ + V +D T G ++ Y A A +A L
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R +F+ L K ++ + F TFGNI C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRRMFETFGNIDECT 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
V G S+G FV+F A++AI+ L+G
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 156 (60.0 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 45/166 (27%), Positives = 81/166 (48%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEES 180
+++ A +FI + +++D K L F FG I V D G +G F+ + ES
Sbjct: 1 MKEPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARES 60
Query: 181 A---KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A +SA+ + + ++ + V P + ES + + ++V L + T++D+++
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKP----ADSESRGEDRK---LFVGMLGKQQTDEDVRR 113
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F FG I V+R DG SK FV F +A ++ AL+G +
Sbjct: 114 MFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSR 159
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 41/122 (33%), Positives = 64/122 (52%)
Query: 84 GYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG----NIFIKNLDKSI 139
G +Y AA+ A L FT +P I+ + + P ++ G NIFI +L +
Sbjct: 334 GMQHYTAAYPAAYGLVSPAFT----QPPAIL-TQQPPQQQQQREGPEGCNIFIYHLPQEF 388
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F FGN++S KV D + QS+ +GFV FDN SA++AI +NG + K++
Sbjct: 389 TDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRL 448
Query: 199 FV 200
V
Sbjct: 449 KV 450
Score = 127 (49.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+++ +L + T+ ++ ++F FG + S V D A +SKCFGFV+FD+P A ++++
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 279 LNG 281
+NG
Sbjct: 438 MNG 440
Score = 121 (47.7 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKA 378
EG N+++ +L +D ++ ++F FG + S KV D S+ GFV+F A A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERR 404
+ MNG + K L V L + K+ R
Sbjct: 435 IQSMNGFQIGMKRLKVQLKRPKDANR 460
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 234 (87.4 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 77/281 (27%), Positives = 131/281 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT---DS--LGQSRG-----------YGFV 173
+++ NL + + + FS G SCK+ T DS + S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+F A +A+ +NG + K+V V ++ D + +V+V +LS T +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTE 128
Query: 234 DLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE---- 288
D+K F FG I+ V++D A GKSK +GFV+F + DA ++ + G+ ++
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 289 WYVGKAQK-KYEREMELKG-KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
W K K +E K +FE + +++ K +Y + ++D +++ FS FG
Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I +V + +G FV FST E A+ A+ +NG +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSI 139
Y +V + +A AL +N + GK +++ ++ P+ +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F+ FG I +V D + G+S+GYGFV F N+ A++AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 199 FVG-----PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEF 242
P K +E+ + RF +V Y ++ T+ +++ F F
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
G I V + K + FV F + AA ++ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 142 (55.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG------IITST------------AVMRDADGKSKCFG 262
+YV NLS TE + ++F + G +IT +V++ CF
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF- 69
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
V F + DAA ++ A+NG+K KE V A ++ K+T++ F
Sbjct: 70 -VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+++V +L I+ + +K F+ FG I+ +V++D G S+G GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 382 MNGKMVVSKPLYVALAQRK 400
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 135 (52.6 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + + F G++ RV +D++T +S GYG+V++ +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD-KSIDNKALHDTFSTF-GNILSCKV 159
L G+ IR ++ R P KS K L + + N++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASG-- 232
Query: 160 ATDSL--------GQ--------SRGYGFVQFDNEESAKSAIDKLNG 190
TD L GQ +GY FV+F ESA AI +NG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 234 (87.4 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 77/281 (27%), Positives = 131/281 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT---DS--LGQSRG-----------YGFV 173
+++ NL + + + FS G SCK+ T DS + S G Y FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+F A +A+ +NG + K+V V ++ D + +V+V +LS T +
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTE 128
Query: 234 DLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE---- 288
D+K F FG I+ V++D A GKSK +GFV+F + DA ++ + G+ ++
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 289 WYVGKAQK-KYEREMELKG-KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
W K K +E K +FE + +++ K +Y + ++D +++ FS FG
Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
I +V + +G FV FST E A+ A+ +NG +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 59/233 (25%), Positives = 106/233 (45%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSI 139
Y +V + +A AL +N + GK +++ ++ P+ +K N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 140 DNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + F+ FG I +V D + G+S+GYGFV F N+ A++AI + G L +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 199 FVG-----PFLRKQERESTADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEF 242
P K +E+ + RF +V Y ++ T+ +++ F F
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK--EWYVGK 293
G I V + K + FV F + AA ++ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 142 (55.0 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG------IITST------------AVMRDADGKSKCFG 262
+YV NLS TE + ++F + G +IT +V++ CF
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF- 69
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
V F + DAA ++ A+NG+K KE V A ++ K+T++ F
Sbjct: 70 -VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+++V +L I+ + +K F+ FG I+ +V++D G S+G GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 382 MNGKMVVSKPLYVALAQRK 400
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 135 (52.6 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + + F G++ RV +D++T +S GYG+V++ +A A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD-KSIDNKALHDTFSTF-GNILSCKV 159
L G+ IR ++ R P KS K L + + N++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASG-- 232
Query: 160 ATDSL--------GQ--------SRGYGFVQFDNEESAKSAIDKLNG 190
TD L GQ +GY FV+F ESA AI +NG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 180 (68.4 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 47/183 (25%), Positives = 92/183 (50%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK----SKCF 261
++E E + +++KNL+ TTE+ LK++F + G + S ++ + + S F
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGF 776
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
GFV + P+ A ++++ L G D + V +++ + + L K + K+T K
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK--- 833
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKAL 379
+ V+N+ +++ELFS FG + + ++ + G RG GFV F T ++A +A
Sbjct: 834 --ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 380 TEM 382
+
Sbjct: 892 NAL 894
Score = 161 (61.7 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--GI--SRGS 364
E+ +E + G L++KNL+ +++KLKE+FS+ GT+ SC + + N G+ S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGF 776
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
GFV + E+A KAL ++ G +V L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 811
Score = 155 (59.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 40/164 (24%), Positives = 81/164 (49%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR---SLGYGYVNYNAAHEATRA 97
+L++ +L+ + +L ++F+++G V S + + + S+G+G+V Y +A +A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 98 LDELNFTPLNGKPIRIMYSYR--DPTI---------RKSGAGNIFIKNLDKSIDNKALHD 146
L +L ++G + + S R P + RK I ++N+ ++ + +
Sbjct: 791 LKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRE 850
Query: 147 TFSTFGNILSCKVATDSLGQS--RGYGFVQFDNEESAKSAIDKL 188
FSTFG + + ++ G RG+GFV F ++ AK A + L
Sbjct: 851 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 147 (56.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 41/163 (25%), Positives = 79/163 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT--DSLGQ--SRGYGFVQFDNEESAKSAI 185
+FIKNL+ + L + FS G + SC ++ + G S G+GFV++ E A+ A+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 186 DKLNGMLLNDKQVFVG-------PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+L G +++ ++ V P + ++ K + + V+N+ +++++
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 239 FGEFGIITSTAVMRDADGKS--KCFGFVNFDDPDDAARSVEAL 279
F FG + + + + G + FGFV+F DA R+ AL
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 123 (48.4 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 46/208 (22%), Positives = 98/208 (47%)
Query: 206 KQERESTADK---TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ E E A++ T + V ++ TE ++ + + + ++R+A G +
Sbjct: 278 RAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPV-AIRIVRNAHGNKTGYI 336
Query: 263 FVNFDDPDDAARSV----EALNGKK---FDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
FV+F + ++ +++ E + G+ F +K K K + +G+ +E
Sbjct: 337 FVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTK-SWQGRILGENEEE 395
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374
D E L+V+NL + +++ L++LFS++G ++ D +G F+ F E
Sbjct: 396 EDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEH 455
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEE 402
A KA +E++G++ + L+V + K+E
Sbjct: 456 AVKAYSEVDGQVFQGRMLHVLPSTIKKE 483
Score = 122 (48.0 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 42/175 (24%), Positives = 77/175 (44%)
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
F F N K A + G +++ E++ + G N + + G L +
Sbjct: 337 FVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT----KGAPKNTTKSWQGRILGEN 392
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNF 266
E E D ++V+NL T+TE+DL+K+F ++G ++ D+ K K F F+ F
Sbjct: 393 EEEE--DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITF 450
Query: 267 DDPDDAARSVEALNGKKFDDKEWYV--GKAQKKYEREMELKGKFE-QSLKETADK 318
P+ A ++ ++G+ F + +V +K+ + G + KE DK
Sbjct: 451 MFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDK 505
Score = 122 (48.0 bits), Expect = 0.00053, P = 0.00053
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L VKNL + + +++ ++LF+ FGT+T C + +G R GF+ F + EEA KA N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 384 GKMV 387
+
Sbjct: 64 KSFI 67
Score = 107 (42.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 56/263 (21%), Positives = 111/263 (42%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S L+V +L + + L LF++ G + + D T++ G+ ++ + A +A
Sbjct: 401 SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAY 460
Query: 99 DELNFTPLNGKPIRIMYSY--RDPTIRKSGAGNIFIKNLDKSID--NKALHDTFSTFGNI 154
E++ G+ + ++ S ++ + S G+ K ++ D N A ++T
Sbjct: 461 SEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTL--F 518
Query: 155 LSCKVATDSLGQSRGYGFVQ-FDNEESAKSAIDKLNG--MLLNDKQVFV---GPFLRKQE 208
+ D++ Q Q FD+E A+ G L+ + + F+ G L
Sbjct: 519 MGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFS 578
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
++ A++++ + VKNL T L++ FG FG + V+ G + V F +
Sbjct: 579 -QAAAERSK-TVILVKNLPAGTLAAQLQETFGHFGSLGR--VLLPEGGIT---AIVEFLE 631
Query: 269 PDDAARSVEALNGKKFDDKEWYV 291
P +A ++ L KF Y+
Sbjct: 632 PLEARKAFRHLAYSKFHHVPLYL 654
Score = 100 (40.3 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
+ + VKNL E+ +++F FG +T ++ DGK + FGF+ F ++A ++ +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 279 LNGKKFDD 286
N K F D
Sbjct: 62 FN-KSFID 68
Score = 95 (38.5 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ +KNL + + F+ FG + C + G+ R +GF+ F +EE A+ A N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 190 GMLLNDKQVFV 200
++ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 70 (29.7 bits), Expect = 6.4e-12, Sum P(3) = 6.4e-12
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-- 212
++ ++ ++ G GY FV F NEE K A+ K N + + + V R++ +T
Sbjct: 320 VAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL-KCNREYMGGRYIEV---FREKNVPTTKG 375
Query: 213 ADKTRFNNVYVKNLSETTTEDDL 235
A K + + L E E+DL
Sbjct: 376 APKNTTKSWQGRILGENEEEEDL 398
Score = 53 (23.7 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 18/83 (21%), Positives = 39/83 (46%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
L V +L + + + LF G + S++ +D R+ +G++ + + EA +A
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEAQKAQK 60
Query: 100 ELNFTPLNGKPIRIMY--SYRDP 120
N + ++ I + + S+ DP
Sbjct: 61 HFNKSFIDTSRITVEFCKSFGDP 83
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 34/132 (25%), Positives = 52/132 (39%)
Query: 86 VNYNAAHEATRALDELNFTPLNGK--PIRIMYSYRDPTIRKS---GAGNIFIKNLDKSID 140
V+ A AT A D L+ P GK P ++ + ++S GAG + + S++
Sbjct: 139 VHQRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQESEEEGAGEDLEE--EASLE 196
Query: 141 NKA-LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
KA + S + S V S S + EES A+ G ++
Sbjct: 197 PKAAVQKELSDMDYLKSKMVKAGSSSSS--------EEEESEDEAVHCDEGSEAEEEDSS 248
Query: 200 VGPFLRKQERES 211
P L QER+S
Sbjct: 249 ATPVL--QERDS 258
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 182 (69.1 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK-----C-FG 262
++ T + T+F VY+KNL+ TT + L F + + A+ K+ C FG
Sbjct: 670 KKGTDNNTQF--VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFG 727
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK------KYEREMELKGKFEQSLKETA 316
F+ F A ++ LNG D E + + K + + EL +QS+K
Sbjct: 728 FIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNG 787
Query: 317 DKFE--GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
+ + +KNL + ++++LF+ +G I S ++ + PNG RG GFV F T EE
Sbjct: 788 GQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEE 847
Query: 375 ASKALTEMNGKMVVSKPLYVALAQR 399
A A+ + + L + A++
Sbjct: 848 AKNAMEALGNSHFYGRHLVLQYAEQ 872
Score = 124 (48.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVN 265
+E E + R ++V+NLS +T E+DL+K+F +FG I+ + D D K SK F+
Sbjct: 352 KEDEDVGESGR---IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFIL 408
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYV--GKA 294
+ P++A +++ ++GK F + +V GKA
Sbjct: 409 YLIPENAVQALNDMDGKVFQGRLIHVLPGKA 439
Score = 122 (48.0 bits), Expect = 0.00049, P = 0.00049
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
VK L ++D + KE F +FGT+T K+++ +G SR GF+ FST + A AL+ +NG
Sbjct: 8 VKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGFSTEQSAKNALS-LNGT 65
Query: 386 MVVSKPLYVALA 397
+ + + V A
Sbjct: 66 FIDTSKIVVETA 77
Score = 115 (45.5 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 30/111 (27%), Positives = 55/111 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I +K L K + +K + F FG + K+ G+SR +GF+ F E+SAK+A+ LN
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKKD-GKSRLFGFIGFSTEQSAKNALS-LN 63
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFN--NVYVKNLSETTTEDDLKKI 238
G ++ ++ V E ++++ + K L+E E + K++
Sbjct: 64 GTFIDTSKIVVETATVASETTENRPWSKYSIGSSSNKRLTEMEKEKEKKEL 114
Score = 114 (45.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 308 FEQSL-KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSG 365
FE KE D E ++V+NL S ++ L+++FS+FG I+ + D + S+G
Sbjct: 346 FEHDYTKEDEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIA 405
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYV 394
F+ + E A +AL +M+GK+ + ++V
Sbjct: 406 FILYLIPENAVQALNDMDGKVFQGRLIHV 434
Score = 109 (43.4 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 109 KPIRIM---YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SL 164
KPI+ Y+ D + +SG IF++NL S + L FS FG I + D
Sbjct: 341 KPIKYFEHDYTKEDEDVGESG--RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDS 398
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
+S+G F+ + E+A A++ ++G + + + V P ++ + +K NN
Sbjct: 399 KKSKGIAFILYLIPENAVQALNDMDGKVFQGRLIHVLPGKAAPAKQFSENKDNNNN 454
Score = 104 (41.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+ I IKNL K + F+ +G I S ++ G RG+GFV+F EE AK+A++
Sbjct: 794 SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAME 853
Query: 187 KL 188
L
Sbjct: 854 AL 855
Score = 103 (41.3 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+ VK L + T+ K+ F +FG +T +++ DGKS+ FGF+ F + +A++ +LN
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGFST-EQSAKNALSLN 63
Query: 281 GKKFDDKEWYVGKA 294
G D + V A
Sbjct: 64 GTFIDTSKIVVETA 77
Score = 72 (30.4 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 35/147 (23%), Positives = 65/147 (44%)
Query: 25 IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 84
I + G G R +T L V ++ + +L++LF++ G++ RV LS R++
Sbjct: 540 IQDIGNKGSKRS--NTVLLVKNIPFKTQEHELHELFSKFGELS--RVV--LSPARTIAL- 592
Query: 85 YVNYNAAHEATRALDELNFTPLNGKPIRIMYS----YRDPT----IRKSGAGNIFIKNLD 136
+ Y +EA L ++ + P+ + ++ ++ P I+KS K+ D
Sbjct: 593 -IEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSE---KSSD 648
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDS 163
S D K + T T + K TD+
Sbjct: 649 SSNDKKEVESTTKTAATTTTTKKGTDN 675
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/97 (21%), Positives = 45/97 (46%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-----RDLSTRRSLGYG 84
G + QFV Y+ +L+ + L F + V+V + ++ S R G+G
Sbjct: 672 GTDNNTQFV----YIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFG 727
Query: 85 YVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
++ +++ A + +LN + ++G I + S ++ T
Sbjct: 728 FIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNET 764
Score = 69 (29.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 288 EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
E +V KK+ +E +G Q + K L VKN+ + +L ELFS+FG
Sbjct: 522 ETHVINETKKF---LEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGE 578
Query: 348 ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
++ +V+ P +R + + EA + PLY+ A
Sbjct: 579 LS--RVVLSP---ARTIALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWA 623
Score = 64 (27.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMR--DPNGISR----GSGFVAFSTAEEASK 377
+Y+KNL+ +++ L F + + +P S G GF+ FS+ + A +
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 378 ALTEMNGKMVVSKPLYVALAQRKE 401
+ ++NG + + + L+ + E
Sbjct: 740 CIKKLNGSSIDGYEISLKLSDKNE 763
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 235 (87.8 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 74/276 (26%), Positives = 137/276 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L +D LH FS + S KV + QS GYGFV+F + +A+ A+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 189 NGMLL-NDKQVFVGPFLRKQERESTADKTRFNN-----VYVKNLSETTTEDDLKKIF-GE 241
+G+ + N +Q PF ST +K N ++V +L+ ++ L + F G
Sbjct: 181 SGVTMPNAEQ----PFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236
Query: 242 FGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK--- 297
+ + V+ D++ G+SK +GFV F D ++ +R++ +NG ++ VG A K
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA 296
Query: 298 -YERE-----MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
Y ++ + L G + + + ++V LD ++++ L + FS+FG + S
Sbjct: 297 AYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSV 356
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
K+ P G +G GFV F+ + A +A+ +NG ++
Sbjct: 357 KI---PVG--KGCGFVQFANRQSAEEAIGNLNGTVI 387
Score = 201 (75.8 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 54/170 (31%), Positives = 96/170 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY---NAAHEATRA 97
+L+VGDL ++++ L+ F+ +V SV+V R+ T +S GYG+V + +AA EA ++
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 98 LDELNFTPLNGKPIRIMY-SYRDPTIRKSGAG---NIFIKNLDKSIDNKALHDTFS-TFG 152
+ P +P R+ + S+ R S G +IF+ +L + + L +TF+ +
Sbjct: 180 FSGVTM-PNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 153 NILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
++ KV DS G+S+GYGFV+F +E A+ ++NG + +Q+ VG
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVG 288
Score = 150 (57.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 49/183 (26%), Positives = 86/183 (46%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVEAL 279
++V +L E L F ++S V+R+ +S+ +GFV F A ++++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+G + A++ + F K ++ L+++V +L +SD L
Sbjct: 181 SGVTMPN-------AEQPFRLNW---ASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLL 230
Query: 340 ELFS-EFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
E F+ + ++ KV+ D N G S+G GFV F E S+A+TEMNG S+ + V +A
Sbjct: 231 ETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
Query: 398 QRK 400
K
Sbjct: 291 TPK 293
Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+S IF+ LD + + L FS FG ++S K+ +G GFVQF N +SA+
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV-----GKGCGFVQFANRQSAEE 377
Query: 184 AIDKLNGMLLNDKQVFV--GPFLRKQERESTADK 215
AI LNG ++ V + G KQ R + ++
Sbjct: 378 AIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQ 411
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 216 (81.1 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 60/235 (25%), Positives = 114/235 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + K+V V ++ D + +V+V +LS T +D+K F FG I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK--AQKK-YERE 301
V++D A GKSK +GFV+F + DA +++ + G+ ++ W K A K YE
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
+ + +++ + +++ +Y + +++ +++ FS FG I +V D
Sbjct: 186 TK-QLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Score = 202 (76.2 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 61/233 (26%), Positives = 109/233 (46%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V ++ A AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + GK +++ ++ P+ +K N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-----PFLRKQERES 211
+V D + G+S+GYGFV F N+ A++AI ++ G L +Q+ P K ES
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 212 TADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
+ ++ V Y ++ TE +++ F FG I V D
Sbjct: 185 NTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Score = 174 (66.3 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ K+T++ F +++V +L I+ + +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 400 K 400
K
Sbjct: 174 K 174
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 216 (81.1 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 57/176 (32%), Positives = 87/176 (49%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
VY+ N+ T T + L K+ E G + VM D G+S+ FGF +DA VE L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + +E V +K +L QS +++A +YV NL +++ + L+
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLS--VLQS-EDSAFVDSPYKVYVGNLAKTVTKEMLE 194
Query: 340 ELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
LFSE G + S KV R P S G GFV FS+ E+ A+ +N ++ + + V
Sbjct: 195 NLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 191 (72.3 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 54/187 (28%), Positives = 89/187 (47%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDN 177
DP+ A ++I N+ +++ N+ L G + +V D G+SR +GF +
Sbjct: 69 DPS--SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Query: 178 EESAKSAIDKLNGMLLNDKQVFVG---------PFLRKQERESTADKTRFNNVYVKNLSE 228
E A + ++KLNG + +++ V P L + E +A VYV NL++
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186
Query: 229 TTTEDDLKKIFGEFGIITSTAVMR-DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
T T++ L+ +F E G + S V R KS FGFV F +D ++ ALN + +
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246
Query: 288 EWYVGKA 294
+ V KA
Sbjct: 247 KIRVNKA 253
Score = 179 (68.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 47/173 (27%), Positives = 89/173 (51%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+G++ +V + QL L + G V V+V D + RS +G+ + +A +++L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 102 NFTPLNGKPIRI------MYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTF 148
N + G+ I++ + S D ++ +S +++ NL K++ + L + F
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLF 197
Query: 149 STFGNILSCKVA-TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
S G ++S KV+ +S G+GFV F +EE ++AI LN LL +++ V
Sbjct: 198 SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 238 (88.8 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 88/367 (23%), Positives = 168/367 (45%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SL++G+L+ + + +L ++ + + +D+ + +GYV++ + E +AL E
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEI-QDVRLGGTKKFGYVDFASEEELQKAL-E 348
Query: 101 LNFTPLNGKPIRI--MYSYRDPTIRKS--GAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LN L G+P+++ S + K A +F+KNL SI L + F +I
Sbjct: 349 LNGKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFDQAVDI-- 406
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
+V + G SRG +++F E A+ A+++ G + + + V F + R+
Sbjct: 407 -RVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVD-FTGDKSRQGGRGAP 464
Query: 217 RFNNVYV-KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ V V NL+ + +ED L+ +F + S + ++ +G+ K + FV F++ +D+ +
Sbjct: 465 SASKVLVVNNLAFSASEDSLQSVFEK---AVSIRIPQN-NGRPKGYAFVEFENVEDSKEA 520
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+E N + + + +Q +RE G+ +T L+VK L D +D
Sbjct: 521 LENCNNTDIEGRSIRLEYSQN--DRERGGGGRGNSGPTKT--------LFVKGLSDDTTD 570
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
LK+ F G I + G S+G GFV F ++ A M+ + + +
Sbjct: 571 QTLKDSFD--GAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLD 628
Query: 396 LAQRKEE 402
A+ K E
Sbjct: 629 YAKPKGE 635
Score = 159 (61.0 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 55/187 (29%), Positives = 86/187 (45%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
++++ NL+ D+LK +F + G +K FG+V+F ++ +++E L
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALE-L 349
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGKK + + KA+ K E E K KE + L+VKNL SI+ D L+
Sbjct: 350 NGKKLLGQPVKLDKARSK-ENSQENK-------KER----DARTLFVKNLPYSITQDDLR 397
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E+F + I +V G SRG ++ F T A KAL E G V + + V
Sbjct: 398 EIFDQAVDI---RVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGD 454
Query: 400 KEERRAR 406
K + R
Sbjct: 455 KSRQGGR 461
Score = 121 (47.7 bits), Expect = 0.00047, P = 0.00046
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
+++E A++K E + E KG K+ EG +L++ NL+++ D+LK S+
Sbjct: 256 EEEETPATPAKRKAETKKE-KGT--PPAKKAKTDGEGFSLFLGNLNNNKDFDELKSAISK 312
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
F + ++ G ++ G+V F++ EE KAL E+NGK ++ +P+ + A+ KE
Sbjct: 313 FFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKAL-ELNGKKLLGQPVKLDKARSKE 368
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 54/194 (27%), Positives = 88/194 (45%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+++ + E DLK IF +FG I V++D G K F+ + + A ++ AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K R +++K +S E D+ L+V L +D+ ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVAL 396
+F FG I C V+R P+G S+G FV F T EA A+ ++G + S L V
Sbjct: 113 RMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKF 172
Query: 397 AQRKEERRARLQAQ 410
A ++ER R Q
Sbjct: 173 ADTEKERGLRRMQQ 186
Score = 156 (60.0 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 45/166 (27%), Positives = 81/166 (48%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEES 180
+++ A +FI + +++D K L F FG I V D G +G F+ + ES
Sbjct: 1 MKEPDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARES 60
Query: 181 A---KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A +SA+ + + ++ + V P + ES + + ++V L + T++D+++
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKP----ADSESRGEDRK---LFVGMLGKQQTDEDVRR 113
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F FG I V+R DG SK FV F +A ++ AL+G +
Sbjct: 114 MFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSR 159
Score = 153 (58.9 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 42/152 (27%), Positives = 72/152 (47%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA---L 98
L++G + ++++ L +F Q G++ + V +D T G ++ Y A A +A L
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R +F+ L K ++ + F FGNI C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRRMFEPFGNIDECT 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
V G S+G FV+F A++AI+ L+G
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 139 (54.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 41/121 (33%), Positives = 62/121 (51%)
Query: 84 GYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY--RDPTIRKSGAG-NIFIKNLDKSID 140
G +Y AA+ A L FT +P I+ + R+ G NIFI +L +
Sbjct: 334 GMQHYTAAYPAAYGLVSPAFT----QPPAILQQQPPQQQQQREGPEGCNIFIYHLPQEFT 389
Query: 141 NKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
+ + F FGN++S KV D + QS+ +GFV FDN SA++AI +NG + K++
Sbjct: 390 DSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNGFQIGMKRLK 449
Query: 200 V 200
V
Sbjct: 450 V 450
Score = 130 (50.8 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+++ +L + T+ ++ ++F FG + S V D A +SKCFGFV+FD+P A +++A
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 279 LNG 281
+NG
Sbjct: 438 MNG 440
Score = 120 (47.3 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKA 378
EG N+++ +L +D ++ ++F FG + S KV D S+ GFV+F A A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERR 404
+ MNG + K L V L + K+ R
Sbjct: 435 IQAMNGFQIGMKRLKVQLKRPKDANR 460
>TAIR|locus:2028205 [details] [associations]
symbol:AT1G45100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00546918 RefSeq:NP_175125.1 UniGene:At.52038
ProteinModelPortal:F4HPM6 SMR:F4HPM6 PRIDE:F4HPM6
EnsemblPlants:AT1G45100.1 GeneID:841077 KEGG:ath:AT1G45100
OMA:SAYGANK ArrayExpress:F4HPM6 Uniprot:F4HPM6
Length = 497
Score = 181 (68.8 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 47/164 (28%), Positives = 85/164 (51%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
FV + V +L + + FN + QVVSVR+ + + +GYG+V + +A+ A +
Sbjct: 155 FVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKH-VGYGFVEFASAYGANK 213
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTFSTFGNI 154
AL+E N L+ I +M + P + A +F+ NL SI + + F G +
Sbjct: 214 ALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEV 273
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ ++ +S G+ G+GFV+F + A+ A+ K NG L++ ++
Sbjct: 274 VHVRLIVNSQGKHAGWGFVEFASANEAEKALVK-NGEYLHNYKI 316
Score = 173 (66.0 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 57/254 (22%), Positives = 117/254 (46%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS------LGYGYVNYNAA 91
VS +L+V +L S + D F+ +G+VV+VR+C LS S L + +
Sbjct: 62 VSVTLFVSELSRQTKISDIIDFFSDVGEVVNVRIC--LSHTGSCCVLALLSFLLLVRQTR 119
Query: 92 HEATRALDELNFTPLNGKPIRIMYSY--RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
H R ++ K +R +++ +D T + + NL + F+
Sbjct: 120 HWKRRMVNICTIKRFLLKLLRQVHTVQSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFN 179
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
++S ++ + G+ GYGFV+F + A A+++ NG L++ ++ + ++ E
Sbjct: 180 GVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILL---MKGHES 236
Query: 210 ESTADKTRFNN-VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
A++ ++V NL ++ D+ F + G + ++ ++ GK +GFV F
Sbjct: 237 PGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFAS 296
Query: 269 PDDAARSVEALNGK 282
++A +++ NG+
Sbjct: 297 ANEAEKAL-VKNGE 309
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 63/266 (23%), Positives = 111/266 (41%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+ + +F+ L + + D FS G +++ ++ G + F
Sbjct: 60 KAVSVTLFVSELSRQTKISDIIDFFSDVGEVVNVRICLSHTGSCCVLALLSFLLLVRQTR 119
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNN--VYVKNLSETTTEDDLKKIF 239
+ + K+ F+ LR+ + D+T F + V V NLS T +K F
Sbjct: 120 HWKRRMVNICTIKR-FLLKLLRQVHTVQSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFF 178
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
+ S ++ + +GK +GFV F A +++E NG+ Y+
Sbjct: 179 NGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGE-------YLHN-----H 226
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
+ + +KG E A + L+V NL DSI + F + G + +++ + G
Sbjct: 227 KILLMKGHESPGFAEEAAITK--TLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQG 284
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGK 385
G GFV F++A EA KAL + NG+
Sbjct: 285 KHAGWGFVEFASANEAEKALVK-NGE 309
Score = 100 (40.3 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-----NLYVKNLDDS--ISDDK 337
D K WY +++ E++G + L ET D E + ++V NL + +
Sbjct: 334 DHKVWYEDYLRRESLLIKEVEGV--EGLDETPDFLEEVAARKNTVFVANLPYNCRLIVPT 391
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
+ FS+ G I +++ D G G GFV F+++ EA KAL + GK+ V
Sbjct: 392 IINFFSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKISV 442
Score = 61 (26.5 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 217 RFNNVYVKNLSETTT--EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
R N V+V NL + F + G I ++ D G+ GFV F+ ++A +
Sbjct: 372 RKNTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEK 431
Query: 275 SVEALNGK 282
+++ GK
Sbjct: 432 ALQKKTGK 439
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 181 (68.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 53/183 (28%), Positives = 96/183 (52%)
Query: 206 KQERESTADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM--RDADGK--SKC 260
++E E D+ + +++KNL+ T+E+ L+K F + G++ S + RD GK S
Sbjct: 688 EEEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMG 747
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+GFV + P+ A +++ L D+ + V K ERE++ + K+TA K
Sbjct: 748 YGFVQYKTPEAAQKAMRQLQHCTVDEHQLEV----KISEREVKSGVAQAKRKKQTARKQT 803
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS-RGSGFVAFSTAEEASKAL 379
+ V+N+ + +L+ELF FG + + ++ + G S RG GF+ F T ++A KA
Sbjct: 804 TSKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAF 863
Query: 380 TEM 382
+ +
Sbjct: 864 SAL 866
Score = 168 (64.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 48/163 (29%), Positives = 85/163 (52%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVAT--DSLGQ--SRGYGFVQFDNEESAKSAI 185
+FIKNL+ + L TFS G + SC ++ D G+ S GYGFVQ+ E+A+ A+
Sbjct: 704 LFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAM 763
Query: 186 DKLNGMLLNDKQVFVGPFLRK--------QERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+L +++ Q+ V R+ + ++ TA K + + V+N+ T +L++
Sbjct: 764 RQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRE 823
Query: 238 IFGEFGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEAL 279
+F FG + + + + G S + FGF++F DA ++ AL
Sbjct: 824 LFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 151 (58.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 42/165 (25%), Positives = 78/165 (47%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC--RDLSTRR-SLGYGYVNYNAAHEATR 96
++L++ +L+ ++ L F++ G V S + RD + + S+GYG+V Y A +
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 97 ALDELNFTPLNGKPIRIMYSYRD------------PTIRKSGAGNIFIKNLDKSIDNKAL 144
A+ +L ++ + + S R+ T RK I ++N+ K L
Sbjct: 762 AMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKEL 821
Query: 145 HDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKL 188
+ F TFG + + ++ +G S RG+GF+ F ++ AK A L
Sbjct: 822 RELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 136 (52.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L VKNL + + +D+ +++F++FGT+T C + +G R GFV F T E+A KAL N
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFN 63
Query: 384 GKMVVSKPLYVAL 396
V + + V L
Sbjct: 64 KSFVDTSRVTVEL 76
Score = 127 (49.8 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 33/111 (29%), Positives = 60/111 (54%)
Query: 295 QKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
+K + ++ + E+ +E D+ G L++KNL+ S++ L++ FS+ G + SC +
Sbjct: 674 EKSAVKNDSVQNEEEEEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTI 733
Query: 354 M--RDPNG--ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
RD G +S G GFV + T E A KA+ ++ V L V +++R+
Sbjct: 734 SKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISERE 784
Score = 120 (47.3 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
+ + VKNL ED +K+F +FG +T A+ DGK + FGFV F +DA ++++
Sbjct: 2 SRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKH 61
Query: 279 LNGKKFDD 286
N K F D
Sbjct: 62 FN-KSFVD 68
Score = 119 (46.9 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 42/207 (20%), Positives = 93/207 (44%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
+K R + T F V ++ E +K+ + + +++DG++ + +V
Sbjct: 277 QKSTRPAIEPTTEFT-VKLRGAPFNVKEQQVKEFMMPLKPV-AIRFAKNSDGRNSGYVYV 334
Query: 265 NFDDPDDAARSV----EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK---ETAD 317
+ + R++ + + G+ + K ++ + E++ F + LK E D
Sbjct: 335 DLRSEAEVERALRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEED 394
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEAS 376
E L+++N+ + +++ LKELFS+ G ++ D +G FV + E A
Sbjct: 395 VAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAV 454
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEER 403
AL +++G + L+V ++ K+E+
Sbjct: 455 SALAQLDGHTFQGRVLHVMASRLKKEK 481
Score = 114 (45.2 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 27/100 (27%), Positives = 54/100 (54%)
Query: 203 FLRK-QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKC 260
F+R+ ++ E D ++++N+ T TE+DLK++F + G ++ D+ K K
Sbjct: 382 FVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKG 441
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
F FV + P++A ++ L+G F + +V ++ K E+
Sbjct: 442 FAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEK 481
Score = 97 (39.2 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 56/261 (21%), Positives = 100/261 (38%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S L++ ++ + + L +LF++ G + V D T++ G+ +V Y A AL
Sbjct: 398 SGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSAL 457
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGA---GNIFIKNLDKSIDNKALHDTFSTFGNI- 154
+L+ G+ + +M S G G+ K K +KA + + +
Sbjct: 458 AQLDGHTFQGRVLHVMASRLKKEKADQGPDAPGSSSYKR-KKDAKDKAASGSSHNWNTLF 516
Query: 155 LSCKVATDSLGQSRGYGFVQ-FDNEESAKSAIDKLNG--MLLNDKQVFVGPFLRKQERES 211
L D++ + Q D+E A+ G ++ + + F+ + S
Sbjct: 517 LGTSAVADAIAEKYNTTKSQVLDHESDGSLAVRMALGETQIVQETRQFLLDNGVSLDSFS 576
Query: 212 TADKTRFNNVY-VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
A R V VKNL DL+ +F G + V+ G + V F +P
Sbjct: 577 QASGERSKCVILVKNLPSGVQVADLEALFSPHGSLGR--VLLPPSGLT---AIVEFLEPT 631
Query: 271 DAARSVEALNGKKFDDKEWYV 291
+A R+ L KF Y+
Sbjct: 632 EAKRAFMKLAYTKFQHVPLYL 652
Score = 95 (38.5 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ +KNL + F+ FG + C + G+ R +GFV F EE A+ A+ N
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFN 63
Query: 190 GMLLNDKQVFV 200
++ +V V
Sbjct: 64 KSFVDTSRVTV 74
Score = 65 (27.9 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
+ VKNL + L+ LFS G++ +V+ P+G++ V F EA +A ++
Sbjct: 587 ILVKNLPSGVQVADLEALFSPHGSLG--RVLLPPSGLT---AIVEFLEPTEAKRAFMKLA 641
Query: 384 GKMVVSKPLYVALA 397
PLY+ A
Sbjct: 642 YTKFQHVPLYLEWA 655
Score = 58 (25.5 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 50 SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109
+V + Q+ + + + V++R ++ R S GY YV+ + E RAL L+ + G+
Sbjct: 300 NVKEQQVKEFMMPL-KPVAIRFAKNSDGRNS-GYVYVDLRSEAEVERAL-RLDKDYMGGR 356
Query: 110 PIRIMYSYRDPTIRKSGAGNIFIKNLDKSI-DNKALHD 146
I + + R+S + KN + + D++ D
Sbjct: 357 YIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEED 394
Score = 55 (24.4 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 20/84 (23%), Positives = 43/84 (51%)
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK--QVF-VGPFLRKQERES 211
++ + A +S G++ GY +V +E + A+ +L+ + + +VF F K +R S
Sbjct: 316 VAIRFAKNSDGRNSGYVYVDLRSEAEVERAL-RLDKDYMGGRYIEVFRANNF--KNDRRS 372
Query: 212 TADKTRFNNVYVKNLSETTTEDDL 235
A ++ +V+ L + E+D+
Sbjct: 373 -AKRSEMEKNFVRELKDDEEEEDV 395
Score = 53 (23.7 bits), Expect = 8.8e-13, Sum P(4) = 8.8e-13
Identities = 19/109 (17%), Positives = 45/109 (41%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
L V +L + + + +F G + +++ +D R+ +G+V + +A +AL
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRK---FGFVGFKTEEDAQKALK 60
Query: 100 ELN--FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
N F + + + + DP + + + + K + K H+
Sbjct: 61 HFNKSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSSKKDTEEKKTHE 109
Score = 40 (19.1 bits), Expect = 8.8e-13, Sum P(4) = 8.8e-13
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 172 FVQFDNEESAKSAIDKLNGMLLNDKQ 197
++ FD++ES +S+ D + DKQ
Sbjct: 180 YLNFDSDESEESSDDGEDAADEEDKQ 205
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 214 (80.4 bits), Expect = 6.1e-17, P = 6.1e-17
Identities = 51/139 (36%), Positives = 77/139 (55%)
Query: 73 RDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFI 132
+D T + GYG+V + + +A A+ +N L GKPIR+ + GA NIFI
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFI 61
Query: 133 KNLDKSIDNKALHDTFSTFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
NLD ID K L+DTFS FG IL K+ D G S+GY F+ F + +++ +AI+ +NG
Sbjct: 62 GNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 121
Query: 191 MLLNDKQVFVGPFLRKQER 209
L ++ + V +K +
Sbjct: 122 QYLCNRPITVSYAFKKDSK 140
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 47/135 (34%), Positives = 68/135 (50%)
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224
GQ +GYGFV+F +EE A AI +N + L K + V + D N+++
Sbjct: 8 GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN---KASAHNKNLDVGA--NIFIG 62
Query: 225 NLSETTTEDDLKKIFGEFGIITSTA-VMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGK 282
NL E L F FG+I T +MRD D G SK + F+NF D + ++EA+NG+
Sbjct: 63 NLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 122
Query: 283 KFDDKEWYVGKAQKK 297
++ V A KK
Sbjct: 123 YLCNRPITVSYAFKK 137
Score = 162 (62.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 44/153 (28%), Positives = 80/153 (52%)
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
G+ + +GFV F +DA +++ +N K K V KA + + +++
Sbjct: 8 GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASA-HNKNLDV----------- 55
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAE 373
G N+++ NLD I + L + FS FG I K+MRDP+ G S+G F+ F++ +
Sbjct: 56 -----GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFD 110
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
+ A+ MNG+ + ++P+ V+ A +K+ + R
Sbjct: 111 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 143
Score = 127 (49.8 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 22/82 (26%), Positives = 48/82 (58%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATR 96
V ++++G+LD +++ LYD F+ G ++ ++ RD T S GY ++N+ + +
Sbjct: 55 VGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDA 114
Query: 97 ALDELNFTPLNGKPIRIMYSYR 118
A++ +N L +PI + Y+++
Sbjct: 115 AIEAMNGQYLCNRPITVSYAFK 136
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 214 (80.4 bits), Expect = 6.1e-17, P = 6.1e-17
Identities = 60/235 (25%), Positives = 114/235 (48%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NL + + + FS G +CK+ D+ G Y FV+F A +A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
G + K+V V ++ D + +V+V +LS T +D+K F FG I+
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKK--DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 121
Query: 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE----WYVGK--AQKK-YERE 301
V++D A GKSK +GFV+F + DA +++ + G+ ++ W K A K YE
Sbjct: 122 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 181
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
+ + +++ + +++ +Y + +++ +++ FS FG I +V D
Sbjct: 182 TK-QLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 233
Score = 202 (76.2 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 61/233 (26%), Positives = 109/233 (46%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+L V ++ + LF+Q+G + ++ D T + Y +V ++ A AL
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 61
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N + GK +++ ++ P+ +K N +F+ +L I + + F+ FG I
Sbjct: 62 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 120
Query: 158 KVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-----PFLRKQERES 211
+V D + G+S+GYGFV F N+ A++AI ++ G L +Q+ P K ES
Sbjct: 121 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 180
Query: 212 TADKTRFNNV-----------YVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
+ ++ V Y ++ TE +++ F FG I V D
Sbjct: 181 NTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 233
Score = 174 (66.3 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV NLS TE + ++F + G + ++ D G + FV F + AA ++ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G+K KE V A ++ K+T++ F +++V +L I+ + +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 109
Query: 341 LFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F+ FG I+ +V++D G S+G GFV+F +A A+ +M G+ + + + A R
Sbjct: 110 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 169
Query: 400 K 400
K
Sbjct: 170 K 170
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 212 (79.7 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 50/145 (34%), Positives = 80/145 (55%)
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
V+V + +D T+ GYG+V + + +A + +N L GKPIR+ + G
Sbjct: 59 VNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVG 118
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KVATD-SLGQSRGYGFVQFDNEESAKSA 184
A NIFI NLD +D K L+DTFS FG IL K+ D G+S+ + F+ F + E++ +A
Sbjct: 119 A-NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAA 177
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER 209
+D +NG L ++ + V +K +
Sbjct: 178 MDAMNGQYLCNRPISVSYAFKKDHK 202
Score = 152 (58.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 46/147 (31%), Positives = 73/147 (49%)
Query: 168 RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
+GYGFV+F +EE A I +N + L K + V + + D N+++ NL
Sbjct: 73 QGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVN---KASAHQKNLDVGA--NIFIGNLD 127
Query: 228 ETTTEDDLKKIFGEFGIITSTA-VMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFD 285
E L F FG+I T +MRD + GKSK F F+NF + + +++A+NG+
Sbjct: 128 VEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLC 187
Query: 286 DKEWYVGKAQKKYEREMELKGKFEQSL 312
++ V A KK + + E G + L
Sbjct: 188 NRPISVSYAFKK-DHKGERHGSAAERL 213
Score = 152 (58.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 42/148 (28%), Positives = 75/148 (50%)
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+GFV F +DA ++ +N K K V KA +++ +++
Sbjct: 75 YGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASA-HQKNLDV---------------- 117
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRDPN-GISRGSGFVAFSTAEEASKA 378
G N+++ NLD + + L + FS FG I K+MRDP G S+ F+ F++ E + A
Sbjct: 118 GANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAA 177
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERRAR 406
+ MNG+ + ++P+ V+ A +K+ + R
Sbjct: 178 MDAMNGQYLCNRPISVSYAFKKDHKGER 205
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 22/82 (26%), Positives = 49/82 (59%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATR 96
V ++++G+LD+ V++ LYD F+ G ++ ++ RD T +S + ++N+ + +
Sbjct: 117 VGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDA 176
Query: 97 ALDELNFTPLNGKPIRIMYSYR 118
A+D +N L +PI + Y+++
Sbjct: 177 AMDAMNGQYLCNRPISVSYAFK 198
Score = 57 (25.1 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
G + + Q ++Y G LD V+++ L++LF Q G V
Sbjct: 4 GPIAERNQ--DATIYAGGLDDKVSETLLWELFVQAGPV 39
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 153 (58.9 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
Identities = 42/152 (27%), Positives = 73/152 (48%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA---AHEATRAL 98
L++G + ++ + L +F Q G++ + V +D T G ++ Y A A +A AL
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R G +F+ L K + + + F FG+I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSEGR--GDRKLFVGMLGKQLSDADVRKMFEPFGSIEECT 124
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
V G S+G FV++ + A++AI L+G
Sbjct: 125 VLRGPDGASKGCAFVKYQSNAEAQAAISALHG 156
Score = 149 (57.5 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 45/167 (26%), Positives = 79/167 (47%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEES 180
++++ A +FI + ++++ K L F FG I V D G +G F+ + ES
Sbjct: 1 MKEADAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARES 60
Query: 181 AKSAIDKLNGMLLNDKQVFVG---PF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
A A + L+ +++ G P ++ + E D+ F + K LS+ D++
Sbjct: 61 ALKAQNALH-----EQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDA----DVR 111
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
K+F FG I V+R DG SK FV + +A ++ AL+G +
Sbjct: 112 KMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSR 158
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLN---LYVKNLDDSISDDKLKELFSEFGTIT 349
KAQ + L G + AD EG L+V L +SD ++++F FG+I
Sbjct: 63 KAQNALHEQKTLPGMNRPIQVKPADS-EGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIE 121
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVALAQRKEERRAR 406
C V+R P+G S+G FV + + EA A++ ++G + S L V A ++ER R
Sbjct: 122 ECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKERGIR 181
Query: 407 LQAQ 410
Q
Sbjct: 182 RMQQ 185
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
NIFI +L + + + F FGN++S KV D + QS+ +GFV FDN SA++AI
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 428 MNGFQIGMKRLKV 440
Score = 129 (50.5 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+++ +L + T+ ++ ++F FG + S V D A +SKCFGFV+FD+P A +++A
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 279 LNG 281
+NG
Sbjct: 428 MNG 430
Score = 121 (47.7 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKA 378
EG N+++ +L +D ++ ++F FG + S KV D S+ GFV+F A A
Sbjct: 365 EGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 424
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERR 404
+ MNG + K L V L + K+ R
Sbjct: 425 IQAMNGFQIGMKRLKVQLKRPKDANR 450
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 231 (86.4 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 76/317 (23%), Positives = 149/317 (47%)
Query: 105 PLNGKPIRIMYSYRDPTIRKSGAGNI---FIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
P +G+P + Y + AG I +I +L +D L + F G + KV
Sbjct: 55 PSSGQPQQQQYG-GGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIR 113
Query: 162 DSL-GQSRGYGFVQFDNEESAKSAIDKLNGMLL-NDKQVFVGPFLRKQERESTADKTRFN 219
+ G S GYGF++F N +A+ + NG + + +Q F + + E + +
Sbjct: 114 NKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEH 173
Query: 220 NVYVKNLSETTTEDDLKKIF-GEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVE 277
V+V +L+ T+ L + F + + V+ D G+SK +GFV F D + R++
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN--LYVKNLDDSISD 335
+NG+ + G A K + + ++ Q+ + + + + N ++V +D S+++
Sbjct: 234 EMNGQYCSSRPMRTGPAANK--KPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTE 291
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D LK +F +FG + K+ P G + GFV ++ A +AL+ +NG + + + ++
Sbjct: 292 DDLKSVFGQFGELVHVKI---PAG--KRCGFVQYANRACAEQALSVLNGTQLGGQSIRLS 346
Query: 396 LAQRKEERRARL-QAQF 411
+ ++ + QAQ+
Sbjct: 347 WGRSPSNKQTQPDQAQY 363
Score = 194 (73.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 66/274 (24%), Positives = 127/274 (46%)
Query: 24 GIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 83
G N G G+ R SL++GDL ++++ L ++F G+ + +V R+ S GY
Sbjct: 69 GSQNPGSAGEIR-----SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGY 123
Query: 84 GYVNYNAAHEATRALDELNFTPL--NGKPIRIMYSYRDPTIRKSGAG---NIFIKNLDKS 138
G++ + A R L N P+ + + R+ ++ R+ G +F+ +L
Sbjct: 124 GFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPD 183
Query: 139 IDNKALHDTF-STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ + L +TF + + ++ KV D + G+S+GYGFV+F +E A+ ++NG + +
Sbjct: 184 VTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSR 243
Query: 197 QVFVGPFLRKQE---RESTADKTRFNNVYVKNLSETTTEDDLKKIFGE------FGIITS 247
+ GP K+ + ++ T+ N+ + T + + E FG
Sbjct: 244 PMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGE 303
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
++ GK +C GFV + + A +++ LNG
Sbjct: 304 LVHVKIPAGK-RC-GFVQYANRACAEQALSVLNG 335
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 221 (82.9 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 53/197 (26%), Positives = 103/197 (52%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
++++ E T + ++V NL + + +D+ ++FG+ G + + ++R DGK++ F FV
Sbjct: 81 QEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFV 140
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
++A +++ + + + V A +++++ K L A L
Sbjct: 141 TMASGEEAQAAIDKFDTFQVSGRIISVSFA-RRFKKPTP---KSPNDLPSPAPGDTRHKL 196
Query: 325 YVKNLDDSISDDKLKELFS--EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
YV NL L+ELF+ +F +++ V DP G S G GFV+F+T EEA A+T++
Sbjct: 197 YVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKL 256
Query: 383 NGKMVVSKPLYVALAQR 399
NGK ++ +P+ + + R
Sbjct: 257 NGKEIMGRPITLKFSLR 273
Score = 171 (65.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 59/208 (28%), Positives = 103/208 (49%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L+V +L S++ + + +LF Q G V +V + R ++ G+ +V + EA A+D+
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 102 NFTPLNGKPIRIMYS--YRDPTIRK-----SGA-GN----IFIKNLDKSIDNKALHDTFS 149
+ ++G+ I + ++ ++ PT + S A G+ +++ NL + L + F+
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFT 215
Query: 150 TFG-NILSCKVA-TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
N +S +V D G+S GYGFV F E A++AI KLNG K++ P K
Sbjct: 216 AADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNG-----KEIMGRPITLKF 270
Query: 208 ERESTADKTRFNNVYVKNLSET--TTED 233
S ++ ++V N SE T ED
Sbjct: 271 SLRSASESEDGDSVEANNASEDGDTVED 298
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 155 (59.6 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 39/153 (25%), Positives = 74/153 (48%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S L+VG + +++SQL LF + V V + +D TR S G ++ + EA + +
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 99 DEL-NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ N L G + Y D + + +F+ L K++ + FS +G I
Sbjct: 77 NACHNKKTLPGANSLLQVKYADGELERL-EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDL 135
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
++ + S+G F++++ +E A SA++ +NG
Sbjct: 136 QILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 51/205 (24%), Positives = 96/205 (46%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFV 264
K+E ++ ++V + + +E L +F EF ++ +++D + S+ F+
Sbjct: 5 KEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
++A + V A + KK Q KY + EL+ + E L F G+
Sbjct: 65 LCPSREEADKLVNACHNKK--TLPGANSLLQVKYA-DGELE-RLEHKL------FVGM-- 112
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
L ++S+ +++ LFS++GTI +++R S+G F+ + T E+A A+ +NG
Sbjct: 113 ----LPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
Query: 385 KMVV---SKPLYVALAQRKEERRAR 406
K + + PL V A + ER R
Sbjct: 169 KHKMEGSTVPLVVKWADTERERHTR 193
Score = 138 (53.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
+ +P P+ I S T GA N+FI N+ + ++ L F +FG +LS KV
Sbjct: 324 SISPGMSTPLGIGLSSVVQTEGPEGA-NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFV 382
Query: 162 D-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
D + G S+ +GFV +D++ +A++AID +NG L K++ V
Sbjct: 383 DKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKV 422
Score = 125 (49.1 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKA 378
EG NL++ N+ D +L F FG + S KV D G+S+ GFV++ + A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 379 LTEMNGKMVVSKPLYVAL 396
+ MNG+ + K L V L
Sbjct: 407 IDMMNGRHLGGKKLKVQL 424
Score = 120 (47.3 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+++ N+ + +L F FGI+ S V D A G SKCFGFV++D A +++
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 279 LNGKKFDDKE 288
+NG+ K+
Sbjct: 410 MNGRHLGGKK 419
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 209 (78.6 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 58/195 (29%), Positives = 99/195 (50%)
Query: 206 KQERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGE-FGIITSTAVMRDADGKSKCFG 262
K + T +K N V++ N+ +K + E G +T + +DA+GKS+ G
Sbjct: 22 KDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCG 81
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK-KYEREMELKGKFEQSLKETADKFEG 321
V F D + +++E +N K+D G+ K + + E ++L+ TA + G
Sbjct: 82 VVEFKDEEFVKKALETMN--KYD----LSGRPLNIKEDPDGE---NARRALQRTAGRL-G 131
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
++V NLD + KLKE+FS GT+ + D +G SRG G V F A EA +A++
Sbjct: 132 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 191
Query: 382 MNGKMVVSKPLYVAL 396
NG+ + +P++V +
Sbjct: 192 FNGQFLFDRPMHVKM 206
Score = 169 (64.5 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 49/178 (27%), Positives = 84/178 (47%)
Query: 130 IFIKNLDKSIDNKALHDTF-STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
+FI N+ + +A+ D G + ++ D+ G+SRG G V+F +EE K A++ +
Sbjct: 39 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 98
Query: 189 N-----GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
N G LN K+ G R+ + TA + + ++V NL LK++F G
Sbjct: 99 NKYDLSGRPLNIKEDPDGENARRA-LQRTAGRLG-STIFVANLDFKVGWKKLKEVFSIAG 156
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
+ + D DGKS+ G V F+ +A +++ NG+ D+ +V K E
Sbjct: 157 TVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVPHE 214
Score = 169 (64.5 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 49/181 (27%), Positives = 83/181 (45%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYV 86
N G G+ + +++ ++ + + DL + +G+V V + +D + +S G G V
Sbjct: 25 NSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKD-AEGKSRGCGVV 83
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS---GAGN----IFIKNLDKSI 139
+ +AL+ +N L+G+P+ I R++ AG IF+ NLD +
Sbjct: 84 EFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRTAGRLGSTIFVANLDFKV 143
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
K L + FS G + + D G+SRG G V F+ A AI NG L D+ +
Sbjct: 144 GWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH 203
Query: 200 V 200
V
Sbjct: 204 V 204
Score = 114 (45.2 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
L G +++ +G ++V+NL ++ KLKE FS+ G + ++ + NG S+G
Sbjct: 517 LSGPMGSGIRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 574
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
G V F + E A KA MNG + + + V L
Sbjct: 575 CGTVRFDSPESAEKACRIMNGIKISGREIDVRL 607
Score = 103 (41.3 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N ++V+NL T LK+ F + G + + + +GKSK G V FD P+ A ++
Sbjct: 534 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 592
Query: 279 LNGKKFDDKE 288
+NG K +E
Sbjct: 593 MNGIKISGRE 602
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 202 (76.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 49/162 (30%), Positives = 84/162 (51%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVG+LD SV++ L LF+ MG V S ++ R+ Y ++ Y+ AT AL
Sbjct: 8 TLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP---YAFIEYSNYQAATTALTA 64
Query: 101 LNFTPLNGKPIRIMYSY---RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+N K I++ ++ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNC 124
Query: 158 KVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
++ D +S+GY FV F + A++AI +NG + + +
Sbjct: 125 RIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSI 166
Score = 190 (71.9 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 43/154 (27%), Positives = 84/154 (54%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++ NLD S+ L FST G + SCK+ + G Y F+++ N ++A +A+ +N
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP-GNDP-YAFIEYSNYQAATTALTAMN 66
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L +K++ V + + D + ++++V +LS + L++ F FG I++
Sbjct: 67 KRLFLEKEIKVN-WATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCR 125
Query: 250 VMRDADG-KSKCFGFVNFDDPDDAARSVEALNGK 282
++RD KSK + FV+F +A +++A+NG+
Sbjct: 126 IVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQ 159
Score = 179 (68.1 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 51/188 (27%), Positives = 94/188 (50%)
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
D+++ +YV NL + +ED L +F G + S ++R+ G + F+ + + A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP-GNDP-YAFIEYSNYQAAT 59
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++ A+N + F +KE V A G + D +++V +L I
Sbjct: 60 TALTAMNKRLFLEKEIKVNWATSP--------GN-----QPKTDISSHHHIFVGDLSPEI 106
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ L+E F+ FG I++C+++RDP+ + S+G FV+F EA A+ MNG+ + S+ +
Sbjct: 107 ETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSI 166
Query: 393 YVALAQRK 400
+ RK
Sbjct: 167 RTNWSTRK 174
Score = 111 (44.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL + L + F G++ + R+ RD T +S GY +V++ EA A+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 102 NFTPLNGKPIRIMYSYRD-PTIRKSGAG 128
N + + IR +S R P R+ G
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPPPREPSKG 184
Score = 73 (30.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 304 LKGKFEQSLKETADKFEGLN--LYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGI 360
+KG + +E ++ N +Y + ISDD + + F +FG I +V +D
Sbjct: 201 VKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD---- 256
Query: 361 SRGSGFVAFSTAEEASKAL-----TEMNGKMV 387
+G F+ F T E A+ A+ +E++G +V
Sbjct: 257 -KGFSFIKFVTKEAAAHAIEHTHNSEVHGNLV 287
Score = 59 (25.8 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 221 VYVKNLSETTTEDDLK-KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
VY DDL K F +FG I V +D K F F+ F + AA ++E
Sbjct: 223 VYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKD-----KGFSFIKFVTKEAAAHAIE 275
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 157 (60.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 44/149 (29%), Positives = 67/149 (44%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VG + N++ LF + G V S + RD ST+ S G +V + +A A L
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGAL 116
Query: 102 -NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
N + G + D R +FI L K + + L + F+ FG+I C V
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENRNER--KLFIGQLSKKHNEENLREIFAKFGHIEDCSVL 174
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
D G+SRG FV F N A A +++
Sbjct: 175 RDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 150 (57.9 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 43/148 (29%), Positives = 72/148 (48%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + A +F+ + + + F +G++ SC + D Q S+G FV F +
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
K AI+ G L N K V G Q + + + +++ LS+ E++L++I
Sbjct: 107 ---KDAIEA-QGALHNIK-VIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREI 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNF 266
F +FG I +V+RD DGKS+ FV F
Sbjct: 162 FAKFGHIEDCSVLRDQDGKSRGCAFVTF 189
Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSA 184
GA N+FI +L + + L +TF+ FG ILS KV D + S+ +GFV ++N +SA +A
Sbjct: 502 GA-NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA 560
Query: 185 IDKLNGMLLNDKQVFV 200
I +NG + K++ V
Sbjct: 561 ISAMNGFQIGSKRLKV 576
Score = 128 (50.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L++ L +++ L+E+F++FG I C V+RD +G SRG FV F+ A A EM+
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Query: 384 GKMVV---SKPLYVALAQRKEERRARLQAQFS 412
+ S PL V A ++++ + ++ +
Sbjct: 204 HSQTMEGCSAPLVVKFADTQKDKDVKTKSMIT 235
Score = 125 (49.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKA 378
+G NL++ +L D L F+ FG I S KV D +S+ GFV++ A+ A+ A
Sbjct: 501 DGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA 560
Query: 379 LTEMNGKMVVSKPLYVAL 396
++ MNG + SK L V L
Sbjct: 561 ISAMNGFQIGSKRLKVQL 578
Score = 112 (44.5 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+++ +L + + DL F FG I S V D SKCFGFV++++ A ++ A
Sbjct: 504 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 563
Query: 279 LNGKKFDDKEWYVGKAQKKYER 300
+NG + K K Q K +R
Sbjct: 564 MNGFQIGSKRL---KVQLKVDR 582
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 228 (85.3 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 52/165 (31%), Positives = 91/165 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L+VG L +++D+ L F +G V+ RV + +T +S GYGYV++ + A +AL+E
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEE 228
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSG--------------AGNIFIKNLDKSIDNKALHD 146
+ ++G+PI + S P KS + +FI NL + + L +
Sbjct: 229 MQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFN 288
Query: 147 TFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
F +GN++SC+V T Q +G+G+VQF + + AK+A++ +NG
Sbjct: 289 VFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNG 333
Score = 196 (74.1 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 51/177 (28%), Positives = 89/177 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
++V LS + LK+ F G +I + +M A GKS+ +G+V+F+ A +++E +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 280 NGKKFDDK----EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
GK+ D + + GK K ++ S +D L++ NL + +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAK-QYGDSQSPPSD-----TLFIGNLSFNANR 283
Query: 336 DKLKELFSEFGTITSCKVMRDPNGIS-RGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
D L +F E+G + SC+V P+ +G G+V FS+ +EA AL MNG+ + +P
Sbjct: 284 DNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRP 340
Score = 190 (71.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 46/180 (25%), Positives = 91/180 (50%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNE 178
P +F+ L +ID+ L F G ++ +V + + G+SRGYG+V F+++
Sbjct: 160 PAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESK 219
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR---------FNNVYVKNLSE 228
+A+ A++++ G ++ + + + K +S D+ + + +++ NLS
Sbjct: 220 SAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSF 279
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEALNGKKFDDK 287
D+L +FGE+G + S V D + K FG+V F D+A ++EA+NG+ + +
Sbjct: 280 NANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
Score = 152 (58.6 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 31/91 (34%), Positives = 55/91 (60%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GD++ S +L++G+L + N L+++F + G V+S RV T++ G+GYV +++
Sbjct: 262 GDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSV 321
Query: 92 HEATRALDELNFTPLNGKPIRIMYSY-RDPT 121
EA AL+ +N + G+P R+ +S RD T
Sbjct: 322 DEAKAALEAMNGEYIEGRPCRLDFSTPRDNT 352
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 51/192 (26%), Positives = 80/192 (41%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
S +D + V K S ++D+ KK G + + KS + D
Sbjct: 61 SDSDSSDEEEVEKKESSSDESDDEDKKEESSSG----SDEEEKKEEKSSSSDSEDSSSSD 116
Query: 271 DAARSVEALNGKKFD-DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
++ ++ + D D E K +K E + E ++S K A E L+V L
Sbjct: 117 SSSSESDSDSDSDSDSDSEEEPSKKRKAEESKEEESAPVKKS-KPAASTEEPATLFVGRL 175
Query: 330 DDSISDDKLKELFSEFGTITSCKV-MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
+I D LK F G + +V M G SRG G+V F + A KAL EM GK +
Sbjct: 176 SWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEID 235
Query: 389 SKPLYVALAQRK 400
+P+ + ++ K
Sbjct: 236 GRPINLDMSTGK 247
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 228 (85.3 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 52/165 (31%), Positives = 91/165 (55%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L+VG L +++D+ L F +G V+ RV + +T +S GYGYV++ + A +AL+E
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEE 228
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSG--------------AGNIFIKNLDKSIDNKALHD 146
+ ++G+PI + S P KS + +FI NL + + L +
Sbjct: 229 MQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFN 288
Query: 147 TFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
F +GN++SC+V T Q +G+G+VQF + + AK+A++ +NG
Sbjct: 289 VFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNG 333
Score = 196 (74.1 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 51/177 (28%), Positives = 89/177 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
++V LS + LK+ F G +I + +M A GKS+ +G+V+F+ A +++E +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 280 NGKKFDDK----EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
GK+ D + + GK K ++ S +D L++ NL + +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAK-QYGDSQSPPSD-----TLFIGNLSFNANR 283
Query: 336 DKLKELFSEFGTITSCKVMRDPNGIS-RGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
D L +F E+G + SC+V P+ +G G+V FS+ +EA AL MNG+ + +P
Sbjct: 284 DNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRP 340
Score = 190 (71.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 46/180 (25%), Positives = 91/180 (50%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNE 178
P +F+ L +ID+ L F G ++ +V + + G+SRGYG+V F+++
Sbjct: 160 PAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESK 219
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR---------FNNVYVKNLSE 228
+A+ A++++ G ++ + + + K +S D+ + + +++ NLS
Sbjct: 220 SAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSF 279
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEALNGKKFDDK 287
D+L +FGE+G + S V D + K FG+V F D+A ++EA+NG+ + +
Sbjct: 280 NANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
Score = 152 (58.6 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 31/91 (34%), Positives = 55/91 (60%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GD++ S +L++G+L + N L+++F + G V+S RV T++ G+GYV +++
Sbjct: 262 GDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSV 321
Query: 92 HEATRALDELNFTPLNGKPIRIMYSY-RDPT 121
EA AL+ +N + G+P R+ +S RD T
Sbjct: 322 DEAKAALEAMNGEYIEGRPCRLDFSTPRDNT 352
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 51/192 (26%), Positives = 80/192 (41%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
S +D + V K S ++D+ KK G + + KS + D
Sbjct: 61 SDSDSSDEEEVEKKESSSDESDDEDKKEESSSG----SDEEEKKEEKSSSSDSEDSSSSD 116
Query: 271 DAARSVEALNGKKFD-DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
++ ++ + D D E K +K E + E ++S K A E L+V L
Sbjct: 117 SSSSESDSDSDSDSDSDSEEEPSKKRKAEESKEEESAPVKKS-KPAASTEEPATLFVGRL 175
Query: 330 DDSISDDKLKELFSEFGTITSCKV-MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
+I D LK F G + +V M G SRG G+V F + A KAL EM GK +
Sbjct: 176 SWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEID 235
Query: 389 SKPLYVALAQRK 400
+P+ + ++ K
Sbjct: 236 GRPINLDMSTGK 247
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 152 (58.6 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 50/177 (28%), Positives = 82/177 (46%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF---GNILSCKVATDSLGQ---SRGYGF 172
DP + +S N+ KNL ++ L F+ G ILS + + S GYGF
Sbjct: 595 DPDVTESNVLNV--KNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGF 652
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE-----RESTADKTRFNNVYVKNLS 227
V+FD+ E+A S L G +L D + F + ++S DK ++VKN++
Sbjct: 653 VEFDSVETATSVYRDLQGTVL-DGHALILRFCENKRSDKVGKDSNKDKP-CTKLHVKNIA 710
Query: 228 ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
T+ +L+++F FG I S + + G+ + FV F +A + +AL F
Sbjct: 711 FEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHF 767
Score = 151 (58.2 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 62/194 (31%), Positives = 90/194 (46%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF---GIITSTAVMRDADGK---SK 259
+Q+ E D T N + VKNLS TT++ LKK F + G I S +++ + S
Sbjct: 589 EQQVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSS 648
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF 319
+GFV FD + A L G D + + K ++ GK S K DK
Sbjct: 649 GYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKV---GK--DSNK---DK- 699
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA---S 376
L+VKN+ + +L++LFS FG I S ++ + G G FV F T +EA
Sbjct: 700 PCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAK 759
Query: 377 KAL--TEMNGKMVV 388
KAL T G+ +V
Sbjct: 760 KALASTHFYGRHLV 773
Score = 142 (55.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 42/158 (26%), Positives = 72/158 (45%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQM---GQVVSVRVCRDLSTRRSL--GYGYVNYNAAHE 93
S L V +L D L F ++ G+++SV + + + L GYG+V +++
Sbjct: 601 SNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVET 660
Query: 94 ATRALDELNFTPLNGKPI--RIMYSYRDPTIRKSG-----AGNIFIKNLDKSIDNKALHD 146
AT +L T L+G + R + R + K + +KN+ + L
Sbjct: 661 ATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQ 720
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
FS FG I S ++ ++GQ GY FV+F ++ A +A
Sbjct: 721 LFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 758
Score = 133 (51.9 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
VKNL + +D+L++ FS+ G IT K+MR +G SR GF+ F +A+EA +A+ N
Sbjct: 6 VKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKYFNNT 65
Query: 386 MVVSKPLYVALAQRKEERRA 405
+ + + V +A + + A
Sbjct: 66 YLGTSLIIVEIAHKVGDENA 85
Score = 132 (51.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 59/269 (21%), Positives = 124/269 (46%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L+V +L + + +L + F+ G++ V + D T+RS G Y+ Y A RA++EL
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 102 NFTPLNGKPIRIMYS-YRDPTIRK-SGAGNI---FIKNLDKSI-------DNKALHDTFS 149
+ + G+ + I+ + +R+ + ++ + N+ F + ++ D KA + F
Sbjct: 356 DNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASEAGGDTKAWNSLFM 415
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESA-KSAIDKLNGMLLNDKQVFV--GPFLRK 206
IL V + +S + + E+ A + A+ + ++ K+ G +
Sbjct: 416 RPDTILENIVRVYGVSKSE---LLDREAEDPAVRLALGETK-VIAETKEALAKAGVNVTS 471
Query: 207 QERESTA---DKTRFNNVY-VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
E+ +T +K R ++ VKNL +TE +L ++FG+FG + + +K
Sbjct: 472 LEKFATRNGDEKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILP-----PTKTMA 526
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYV 291
F +P +A +++ + K++ D Y+
Sbjct: 527 LAVFLEPAEARAALKGMAYKRYKDAPLYL 555
Score = 115 (45.5 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
+ + VKNL + ED L+ F + G IT +MR DGKS+ FGF+ F +A ++++
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKY 61
Query: 279 LN 280
N
Sbjct: 62 FN 63
Score = 114 (45.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADK-FEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
VGK E+E GK Q K +D + L+V+NL + ++++L E FS FG I+
Sbjct: 262 VGKDDDGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKIS 321
Query: 350 SCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
++ D SRG ++ + E A++A+ E++ + L++ A+ +E
Sbjct: 322 EVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRE 374
Score = 105 (42.0 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I +KNL K + L D FS G I K+ + G+SR +GF+ F + + A+ AI N
Sbjct: 4 ICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKYFN 63
Query: 190 GMLLNDKQVFV 200
L + V
Sbjct: 64 NTYLGTSLIIV 74
Score = 105 (42.0 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 43/191 (22%), Positives = 86/191 (45%)
Query: 133 KNL-DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
KNL D DN++ + G+ K TD GQ + D + A + K +
Sbjct: 213 KNLSDSESDNESEDSSEDEAGDD-DGKAETD--GQDADIRYFPIDGDVEA-GGVGKDDD- 267
Query: 192 LLNDKQVFVGPFLRKQERESTADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
D G QE ++ +D ++V+NL T TE++L + F FG I+ +
Sbjct: 268 --GDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHL 325
Query: 251 MRDADGK-SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKKYEREMELKGK 307
+ D + K S+ ++ + P+ AAR++E L+ F + ++ K ++ ++++
Sbjct: 326 VLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTSN 385
Query: 308 FEQSLKETADK 318
++ K+ ++
Sbjct: 386 LPKTFKQKREE 396
Score = 90 (36.7 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 29/103 (28%), Positives = 52/103 (50%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAID 186
G +F++NL + + L + FSTFG I + D +SRG ++ + E A A++
Sbjct: 294 GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAME 353
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
+L+ + + + P + RE T+DK + N+ NL +T
Sbjct: 354 ELDNSSFQGRLLHILP---AKHRE-TSDK-QVNDT--SNLPKT 389
Score = 89 (36.4 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF---GTITSCKVMRDPNG---ISR 362
EQ ++ D E L VKNL +D+ LK+ F++ G I S +++ +S
Sbjct: 589 EQQVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSS 648
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
G GFV F + E A+ ++ G ++ L + + K
Sbjct: 649 GYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENK 686
Score = 84 (34.6 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
V +L V + QL D F+Q G++ ++ R + +S +G++ + +A EA +A+ N
Sbjct: 6 VKNLPKHVKEDQLRDHFSQKGEITDAKLMRS-NDGKSRQFGFIGFRSAQEAQQAIKYFNN 64
Query: 104 TPLNGKPIRIMYSYR 118
T L I + +++
Sbjct: 65 TYLGTSLIIVEIAHK 79
Score = 70 (29.7 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L VKNL + ++ +L ++F +FG++ K++ P ++ F EA AL M
Sbjct: 490 LLVKNLPFASTEKELAQMFGKFGSLD--KIILPP---TKTMALAVFLEPAEARAALKGMA 544
Query: 384 GKMVVSKPLYVALA 397
K PLY+ A
Sbjct: 545 YKRYKDAPLYLEWA 558
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 144 (55.7 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 42/151 (27%), Positives = 71/151 (47%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY---NAAHEATRAL 98
L+VG + + + L +F Q G++ + V +D T G ++ Y ++A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R G +F+ L K ++ + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESR--GDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECT 124
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
V G S+G FV+F A++AI+ L+
Sbjct: 125 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 155
Score = 144 (55.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 42/166 (25%), Positives = 78/166 (46%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQF---DN 177
+++ A +F+ + + ++ K L F FG I V D G +G F+ + D+
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+SA+ + + ++ + V P + ES D+ ++V L + T++D++K
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKP----ADSESRGDR----KLFVGMLGKQQTDEDVRK 112
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F FG I V+R DG SK FV F +A ++ L+ +
Sbjct: 113 MFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 158
Score = 140 (54.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 39/123 (31%), Positives = 58/123 (47%)
Query: 293 KAQKKYEREMELKGKFEQSLKETAD-KFEG-LNLYVKNLDDSISDDKLKELFSEFGTITS 350
KAQ + L G + AD + G L+V L +D+ ++++F FGTI
Sbjct: 63 KAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 122
Query: 351 CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVALAQRKEERRARL 407
C V+R P+G S+G FV F T EA A+ ++ + S L V A ++ER R
Sbjct: 123 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRR 182
Query: 408 QAQ 410
Q
Sbjct: 183 MQQ 185
Score = 131 (51.2 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGF 263
++Q+++ + N+++ +L + T+ ++ ++F FG + S V D A +SKCFGF
Sbjct: 366 QQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 425
Query: 264 VNFDDPDDAARSVEALNG 281
V+FD+P A +++A+NG
Sbjct: 426 VSFDNPASAQAAIQAMNG 443
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
NIFI +L + + + F FG+++S KV D + QS+ +GFV FDN SA++AI
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 118 (46.6 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFV 367
+Q ++ + +G N+++ +L +D ++ ++F FG + S KV D S+ GFV
Sbjct: 367 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 426
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+F A A+ MNG + K L V L + K+ R
Sbjct: 427 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 159 (61.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 50/197 (25%), Positives = 90/197 (45%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
++V + E DL+ +F +FG I +++D G K F+ + D A R L
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA-DKFEGLNLYVKNLDDSISDDKL 338
+ D++ G R M++K S + DK + L++ L S+D++
Sbjct: 91 H-----DQKTLPGM-----NRAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEV 140
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVA 395
+ LF+ FG + V+R +G S+G FV + +A A++ ++G + S L V
Sbjct: 141 RALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVK 200
Query: 396 LAQRKEERRARLQAQFS 412
A ++ER+ R Q +
Sbjct: 201 YADTEKERQNRRMQQMA 217
Score = 153 (58.9 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 40/166 (24%), Positives = 78/166 (46%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEES 180
++ A +F+ + ++++ K L F FG I + D G +G F+ + + +S
Sbjct: 23 VKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDS 82
Query: 181 A---KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A ++ + + ++ + V P S DK +++ LS+ +ED+++
Sbjct: 83 AVRCQATLHDQKTLPGMNRAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRA 142
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F FG + V+R ADG SK FV + DA ++ AL+G +
Sbjct: 143 LFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQ 188
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
N+FI +L + + L F+ FG+I+S KV D + QS+ +GFV +DN S+++AI
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITA 489
Query: 188 LNGMLLNDKQVFVGPFLRKQERES 211
+NG + K++ V L++ ES
Sbjct: 490 MNGFQIGMKRLKVQ--LKRPRNES 511
Score = 122 (48.0 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKA 378
+G NL++ +L D +L ++F+ FG I S KV D S+ GFV++ + A
Sbjct: 427 DGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAA 486
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERR 404
+T MNG + K L V L + + E R
Sbjct: 487 ITAMNGFQIGMKRLKVQLKRPRNESR 512
Score = 113 (44.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 38/156 (24%), Positives = 66/156 (42%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA---L 98
L+VG + ++ + L LF Q G++ + +D T G ++ Y A R L
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 99 DELNFTPLNGKPIRIMYSYRD--PTIRKSGAGN--IFIKNLDKSIDNKALHDTFSTFGNI 154
+ P + +++ + D P K + +FI L K + F+TFG +
Sbjct: 91 HDQKTLPGMNRAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGEL 150
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
V + G S+G FV++ + A AI L+G
Sbjct: 151 DEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHG 186
Score = 107 (42.7 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
N+++ +L + + +L ++F FG I S V D A +SKCFGFV++D+ + ++ A
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITA 489
Query: 279 LNG 281
+NG
Sbjct: 490 MNG 492
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 224 (83.9 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 50/168 (29%), Positives = 95/168 (56%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++GDL +++S L+ F+Q G+V+SV++ R+ T +S YG+V +N A + L
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS 144
Query: 101 LNFT--PLNGKPIRIMYSYRDPTIRKSGAGN---IFIKNLDKSIDNKALHDTF-STFGNI 154
N T P +P R+ ++ +++ G+ IF+ +L + + L DTF S + ++
Sbjct: 145 YNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSL 204
Query: 155 LSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
KV D+ G S+GYGFV+F +E A+ ++NG+ + + + +G
Sbjct: 205 KGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIG 252
Score = 224 (83.9 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 65/258 (25%), Positives = 128/258 (49%)
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNG-MLLNDKQVFVGPFLRKQERESTADKTRFNNVYV 223
GQS YGFV+F+ +A+ + NG M+ N +Q F + E A+ +++V
Sbjct: 122 GQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFV 181
Query: 224 KNLSETTTEDDLKKIFGE-FGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNG 281
+L+ T+ L+ F + + V+ DA+ G SK +GFV F D + +R++ +NG
Sbjct: 182 GDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNG 241
Query: 282 KKFDDKEWYVG-------KAQKKYERE-MELKGKFEQSLKET-ADKFEG----LNLYVKN 328
+ +G A ++Y + + L G + + T + +G ++V
Sbjct: 242 VYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGG 301
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD ++D++L++ F++FG + S K+ P G +G GFV FS A +A+ +++G ++
Sbjct: 302 LDSEVTDEELRQSFNQFGEVVSVKI---PAG--KGCGFVQFSDRSSAQEAIQKLSGAIIG 356
Query: 389 SKPLYVALAQRKEERRAR 406
+ + ++ + ++ R
Sbjct: 357 KQAVRLSWGRSPANKQMR 374
Score = 165 (63.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 49/184 (26%), Positives = 92/184 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEAL 279
+++ +L + E L F + G + S ++R+ G+S+ +GFV F+ A + +++
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + E + + + G F K A+ +++V +L ++D L+
Sbjct: 146 NGTMMPNTE-------QPFR--LNWAG-FSTGEKR-AETGSDFSIFVGDLASDVTDTMLR 194
Query: 340 ELF-SEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+ F S + ++ KV+ D N G S+G GFV F E S+A+TEMNG S+ + + +A
Sbjct: 195 DTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVA 254
Query: 398 QRKE 401
K+
Sbjct: 255 TPKK 258
Score = 117 (46.2 bits), Expect = 0.00063, P = 0.00063
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IF+ LD + ++ L +F+ FG ++S K+ +G GFVQF + SA+ AI KL+
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKIPA-----GKGCGFVQFSDRSSAQEAIQKLS 351
Query: 190 GMLLNDKQV 198
G ++ + V
Sbjct: 352 GAIIGKQAV 360
Score = 117 (46.2 bits), Expect = 0.00063, P = 0.00063
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG A +G D +T+++VG LD V D +L FNQ G+VVSV++
Sbjct: 278 SNGAATHGSQSDGDSS-NTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI------PAGK 330
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
G G+V ++ A A+ +L+ + + +R+ + R P
Sbjct: 331 GCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWG-RSP 368
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 223 (83.6 bits), Expect = 6.8e-16, P = 6.8e-16
Identities = 53/170 (31%), Positives = 89/170 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++VG L S++D L F +G V+ RV + T RS GYGYV++ A +A+ E
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 101 LNFTPLNGKPIRIMYSYRDPT-----IRKSG------AGNIFIKNLDKSIDNKALHDTFS 149
+ ++G+PI S P +K G + +F+ NL + D A+ + F+
Sbjct: 229 MQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFA 288
Query: 150 TFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
G ++S ++ T Q +G+G+VQF N E AK A+D L G ++++ V
Sbjct: 289 KHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338
Score = 185 (70.2 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 48/190 (25%), Positives = 95/190 (50%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IITSTAVMRDADGKSKCFGF 263
+KQ+ E T + ++V LS + ++ LKK F G +I + + +S+ +G+
Sbjct: 157 KKQKNEETEEPA---TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGY 213
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
V+F++ A ++++ + GK+ D + + K + KF + E +D
Sbjct: 214 VDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSD-----T 268
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS-RGSGFVAFSTAEEASKALTEM 382
L++ NL + D + ELF++ G + S ++ P +G G+V FS E+A KAL +
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 383 NGKMVVSKPL 392
G+ + ++P+
Sbjct: 329 QGEYIDNRPV 338
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/97 (30%), Positives = 54/97 (55%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GD S +L++G+L + + +++LF + G+VVSVR+ T + G+GYV ++
Sbjct: 259 GDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNM 318
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+A +ALD L ++ +P+R+ +S P G G
Sbjct: 319 EDAKKALDALQGEYIDNRPVRLDFSSPRPN-NDGGRG 354
Score = 115 (45.5 bits), Expect = 0.00099, P = 0.00099
Identities = 33/109 (30%), Positives = 52/109 (47%)
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
K++ E E E +Q +ET E ++V L SI D+ LK+ F G + +
Sbjct: 142 KSEDAEEEEDEESSNKKQKNEETE---EPATIFVGRLSWSIDDEWLKKEFEHIGGVIGAR 198
Query: 353 VMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
V+ + SRG G+V F A KA+ EM GK + +P+ ++ K
Sbjct: 199 VIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 178 (67.7 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 49/167 (29%), Positives = 95/167 (56%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNYNAAHEATRAL 98
T+L++G+L+ ++++ + +L+ QMG+ V+V++ RD S R + GY +V++ + A +AL
Sbjct: 65 TTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL 124
Query: 99 DELNFTPL--NGKPIRIMYSYRDPTIRKS--GAG---NIFIKNLDKSIDNKALHDTF-ST 150
LN TP+ + ++ ++ +S G +IF+ +L ++ L F S
Sbjct: 125 S-LNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSR 183
Query: 151 FGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
F + S K+ TD + G SRGYGFV+F +E + A+ ++ G+ ++
Sbjct: 184 FPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNR 230
Score = 148 (57.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 47/186 (25%), Positives = 93/186 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKC-FGFVNFDDPDDAARSVEA 278
+++ L E+ ++ ++ + G + ++RD G+S + FV+F P AA+++ +
Sbjct: 67 LWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL-S 125
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG + + ++ G ++ D+ +++V +L +++ L
Sbjct: 126 LNGTPMPN-------TNRLFKLNWATGGGLADRSRD--DRGPEYSIFVGDLGPEVNEYVL 176
Query: 339 KELF-SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
LF S F + S K+M DP +G+SRG GFV FS + +AL+EM G ++P+ ++
Sbjct: 177 VSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRIST 236
Query: 397 AQRKEE 402
A K +
Sbjct: 237 ATPKNK 242
Score = 119 (46.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 46/182 (25%), Positives = 81/182 (44%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSR-GYGFVQFDNEESAKS 183
G +++ L+ ID + + + G ++ K+ D G+S GY FV F + +A
Sbjct: 63 GKTTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAK 122
Query: 184 AIDKLNGMLL-NDKQVF-----VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ LNG + N ++F G L + R+ D+ +++V +L E L
Sbjct: 123 ALS-LNGTPMPNTNRLFKLNWATGGGLADRSRD---DRGPEYSIFVGDLGPEVNEYVLVS 178
Query: 238 IF-GEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+F F S +M D G S+ +GFV F D +D R++ + G ++ + A
Sbjct: 179 LFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTAT 238
Query: 296 KK 297
K
Sbjct: 239 PK 240
Score = 105 (42.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 29/92 (31%), Positives = 48/92 (52%)
Query: 26 ANNGGVGD-AR--QFVSTSLYVGDLDLSVNDSQLYDLF-NQMGQVVSVRVCRDLSTRRSL 81
A GG+ D +R + S++VGDL VN+ L LF ++ S ++ D + S
Sbjct: 143 ATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSR 202
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
GYG+V ++ ++ RAL E+ +P+RI
Sbjct: 203 GYGFVRFSDENDQQRALSEMQGVYCGNRPMRI 234
Score = 88 (36.0 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 23/75 (30%), Positives = 36/75 (48%)
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
Q + + D ++V L +++D+L+ F FG IT K+ P G +G GFV F
Sbjct: 275 QPMNQFTDP-NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKI---PPG--KGCGFVQF 328
Query: 370 STAEEASKALTEMNG 384
A A+ +M G
Sbjct: 329 VQRHAAEMAINQMQG 343
Score = 79 (32.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 24/98 (24%), Positives = 42/98 (42%)
Query: 103 FTPLNGKPIRIMYSYRDPTIRKSGAGN--IFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+ P+ P+ Y P + + N +F+ L + L F FG I K+
Sbjct: 260 YPPMGAPPMGF-YGAPQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIP 318
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+G GFVQF +A+ AI+++ G + + +V
Sbjct: 319 P-----GKGCGFVQFVQRHAAEMAINQMQGYPIGNSRV 351
Score = 72 (30.4 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 24/65 (36%), Positives = 31/65 (47%)
Query: 219 NN--VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
NN V+V LS TED+L+ F FG IT + GK C GFV F A ++
Sbjct: 284 NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKI---PPGKG-C-GFVQFVQRHAAEMAI 338
Query: 277 EALNG 281
+ G
Sbjct: 339 NQMQG 343
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 155 (59.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 52/195 (26%), Positives = 88/195 (45%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+++ + E DLK IF ++G I V++D G K F+ + + A ++ AL
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ Y G R +++K ++ + E L+V L SD+ ++
Sbjct: 69 HYSS-----GYSGM-----NRPIQVKPA------DSEGRGEDRKLFVGMLGKQQSDEDVR 112
Query: 340 ELFSEFGTITSCKVMRDPNGISR-GSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVA 395
++F FG I C V+R P+G S+ G FV F + EA A+ ++G + S L V
Sbjct: 113 KIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVK 172
Query: 396 LAQRKEERRARLQAQ 410
A ++ER R Q
Sbjct: 173 FADTEKERGVRRMQQ 187
Score = 142 (55.0 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 41/153 (26%), Positives = 74/153 (48%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++G + ++ + L +F Q G++ + V +D T G ++ Y A A +A L
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 102 NFTP-LNG--KPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+++ +G +PI++ + D R +F+ L K ++ + F FG I C
Sbjct: 69 HYSSGYSGMNRPIQVKPA--DSEGRGEDR-KLFVGMLGKQQSDEDVRKIFEPFGGIDECT 125
Query: 159 VATDSLGQSR-GYGFVQFDNEESAKSAIDKLNG 190
V G S+ G FV+F + A+SAI+ L+G
Sbjct: 126 VLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHG 158
Score = 142 (55.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 43/167 (25%), Positives = 80/167 (47%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEES 180
+++ A +FI + ++++ K L F +G I V D G +G F+ + ES
Sbjct: 1 MKEPDAIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARES 60
Query: 181 A---KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A +SA+ +G ++ + V P + E + + ++V L + +++D++K
Sbjct: 61 AIKAQSALHYSSGYSGMNRPIQVKP----ADSEGRGEDRK---LFVGMLGKQQSDEDVRK 113
Query: 238 IFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEALNGKK 283
IF FG I V+R DG SK FV F +A ++ +L+G +
Sbjct: 114 IFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSR 160
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 122 IRKSGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFD 176
+R++ G N+FI +L + + + F FGN++S KV D + QS+ +GFV FD
Sbjct: 347 VREANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFD 406
Query: 177 NEESAKSAIDKLNGMLLNDKQVFV 200
N SA++AI +NG + K++ V
Sbjct: 407 NPASAQTAIQAMNGFQIGMKRLKV 430
Score = 130 (50.8 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
NV++ +L + T+ ++ ++F FG + S V D A +SKCFGFV+FD+P A +++A
Sbjct: 358 NVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 417
Query: 279 LNG 281
+NG
Sbjct: 418 MNG 420
Score = 129 (50.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGF 366
F Q ++E EG N+++ +L +D ++ ++F FG + S KV D S+ GF
Sbjct: 343 FSQCVREANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGF 402
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
V+F A A+ MNG + K L V L + K+ R
Sbjct: 403 VSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 440
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 198 (74.8 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 46/172 (26%), Positives = 94/172 (54%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKL 188
+++ ++ + + F+ FG I S ++ DS+ +G+ FV+++ E+A+ A++++
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 189 NGMLLNDKQVFVG-PFLRKQER---ESTADKTR-FNNVYVKNLSETTTEDDLKKIFGEFG 243
N ++L + + VG P Q + + A++ R FN +YV ++ + ++DD+K +F FG
Sbjct: 162 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 221
Query: 244 IITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
I S + RD GK K +GF+ ++ + +V ++N + VGKA
Sbjct: 222 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 187 (70.9 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 48/166 (28%), Positives = 83/166 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
VYV ++ ED +++ F FG I S + D+ K K F FV ++ P+ A ++E +
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN-LYVKNLDDSISDDKL 338
N + VG+ G+ + + + A++ N +YV ++ +SDD +
Sbjct: 162 NSVMLGGRNIKVGRPSNI--------GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 339 KELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMN 383
K +F FG I SC + RDP G +G GF+ + A+ + A++ MN
Sbjct: 214 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 259
Score = 176 (67.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 42/170 (24%), Positives = 84/170 (49%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+YVG + + + + F G + S+ + D T + G+ +V Y A AL+++
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 102 NFTPLNGKPIRI----MYSYRDPTI----RKSGAGN-IFIKNLDKSIDNKALHDTFSTFG 152
N L G+ I++ P I ++ A N I++ ++ + + + + F FG
Sbjct: 162 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 221
Query: 153 NILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
I SC +A D + G+ +GYGF++++ +S++ A+ +N L + + VG
Sbjct: 222 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271
Score = 112 (44.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
+AR F +YV + ++D + +F G++ S + RD +T + GYG++ Y A
Sbjct: 192 EARAF--NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 249
Query: 93 EATRALDELNFTPLNGKPIRI 113
+ A+ +N L G+ +R+
Sbjct: 250 SSQDAVSSMNLFDLGGQYLRV 270
Score = 71 (30.1 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 19/88 (21%), Positives = 40/88 (45%)
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG-----FVAFSTAEEASKALTE 381
K++DD + + +E +FG + + ++ G + FV FS A E KA+ +
Sbjct: 444 KDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQD 502
Query: 382 MNGKMVVSKPLYVALAQRKEERRARLQA 409
+NG+ + + + ++ + L A
Sbjct: 503 LNGRWFAGRKVVAEVYDQERFDNSDLSA 530
Score = 64 (27.6 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG- 262
LRKQE ST R N V K++ + E ++ + G+FG + + ++ G+ +
Sbjct: 427 LRKQE--STVMVLR-NMVDPKDIDDDL-EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEI 482
Query: 263 ----FVNFDDPDDAARSVEALNGKKFDDKEWYVGK--AQKKYERE 301
FV F + ++++ LNG+ W+ G+ + Y++E
Sbjct: 483 IVKIFVEFSVASETHKAIQDLNGR------WFAGRKVVAEVYDQE 521
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 170 (64.9 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 56/194 (28%), Positives = 89/194 (45%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
++V + E DLK IF +FG I V++D G K F+ + D A ++ AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K R +++K +S E D+ L+V L +D+ ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVAL 396
++F FGTI C V+R P+G S+G FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 397 AQRKEERRARLQAQ 410
A ++ER R Q
Sbjct: 173 ADTEKERGLRRMQQ 186
Score = 140 (54.3 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 41/151 (27%), Positives = 70/151 (46%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY---NAAHEATRAL 98
L+VG + + + L +F Q G++ + V +D T G ++ Y ++A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R +F+ L K ++ + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECT 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
V G S+G FV+F A++AI+ L+
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 140 (54.3 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 41/166 (24%), Positives = 78/166 (46%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQF---DN 177
+++ A +F+ + + ++ K L F FG I V D G +G F+ + D+
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+SA+ + + ++ + V P + ES + + ++V L + T++D++K
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKP----ADSESRGEDRK---LFVGMLGKQQTDEDVRK 113
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F FG I V+R DG SK FV F +A ++ L+ +
Sbjct: 114 MFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 131 (51.2 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGF 263
++Q+++ + N+++ +L + T+ ++ ++F FG + S V D A +SKCFGF
Sbjct: 316 QQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 375
Query: 264 VNFDDPDDAARSVEALNG 281
V+FD+P A +++A+NG
Sbjct: 376 VSFDNPASAQAAIQAMNG 393
Score = 128 (50.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
NIFI +L + + + F FG+++S KV D + QS+ +GFV FDN SA++AI
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 391 MNGFQIGMKRLKV 403
Score = 118 (46.6 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFV 367
+Q ++ + +G N+++ +L +D ++ ++F FG + S KV D S+ GFV
Sbjct: 317 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 376
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+F A A+ MNG + K L V L + K+ R
Sbjct: 377 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 413
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 170 (64.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 56/194 (28%), Positives = 89/194 (45%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
++V + E DLK IF +FG I V++D G K F+ + D A ++ AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K R +++K +S E D+ L+V L +D+ ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVAL 396
++F FGTI C V+R P+G S+G FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 397 AQRKEERRARLQAQ 410
A ++ER R Q
Sbjct: 173 ADTEKERGLRRMQQ 186
Score = 140 (54.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 41/151 (27%), Positives = 70/151 (46%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY---NAAHEATRAL 98
L+VG + + + L +F Q G++ + V +D T G ++ Y ++A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R +F+ L K ++ + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECT 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
V G S+G FV+F A++AI+ L+
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 140 (54.3 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 41/166 (24%), Positives = 78/166 (46%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQF---DN 177
+++ A +F+ + + ++ K L F FG I V D G +G F+ + D+
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+SA+ + + ++ + V P + ES + + ++V L + T++D++K
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKP----ADSESRGEDRK---LFVGMLGKQQTDEDVRK 113
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F FG I V+R DG SK FV F +A ++ L+ +
Sbjct: 114 MFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 133 (51.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGF 263
++Q+++ + N+++ +L + T+ ++ ++F FG + S V D A +SKCFGF
Sbjct: 395 QQQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 454
Query: 264 VNFDDPDDAARSVEALNG 281
V+FD+P A +++A+NG
Sbjct: 455 VSFDNPASAQAAIQAMNG 472
Score = 129 (50.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESA 181
R G NIFI +L + + + F FG+++S KV D + QS+ +GFV FDN SA
Sbjct: 405 RPDGC-NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 463
Query: 182 KSAIDKLNGMLLNDKQVFV 200
++AI +NG + K++ V
Sbjct: 464 QAAIQAMNGFQIGMKRLKV 482
Score = 120 (47.3 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFV 367
+Q ++ + +G N+++ +L +D ++ ++F FG + S KV D S+ GFV
Sbjct: 396 QQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 455
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+F A A+ MNG + K L V L + K+ R
Sbjct: 456 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 492
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 226 (84.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 89/371 (23%), Positives = 167/371 (45%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++L+V +L L + F+ +G + V + T + GYG+V ++ +A RA
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 99 DELNFTPLNGKPIRIMY------SYRDP--------TIRKSGAGNIFIKNLDKSIDN-KA 143
EL L+G+ +R+ + S D TIR+ + I+NL SI +
Sbjct: 64 KELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQH 123
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L FS FG + K+ T G+ G+ FV + ++A+ A++ LNG ++ + + V
Sbjct: 124 LEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG--IITSTAVMRDADGKSKCF 261
+ K E+T L + ++E++ K+ + G I+T A D++ + +
Sbjct: 184 VSKDAFEATT------------LKDASSEEENKEFVSDEGHSIVTEDA-SADSESEEEVD 230
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G + + + A S E G DD E + K E++ + L++T
Sbjct: 231 G--HSEGKELAGESEE--EGSNVDDVEDSGDSSSDKNSINHEIRDN--EGLEDT------ 278
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
++V+NL ++ +L F +FG + K+++DP S G GF+ F ++ L
Sbjct: 279 --VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCL- 335
Query: 381 EMNGKMVVSKP 391
EM ++ +P
Sbjct: 336 EMASQLPTQEP 346
Score = 177 (67.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 49/185 (26%), Positives = 91/185 (49%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVE 277
+ ++V+NL+ T +DDL F + G I V+ + + G+++ +GFV F +DA R+ +
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L KK + + A + E++ +++K+T + L ++NL SI +
Sbjct: 65 ELKNKKLHGRILRLDFATPRKRSEVDTDQN--KAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 338 -LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+ FS+FG + K+ G G FV + A +A+ +NG + +P+ V
Sbjct: 123 HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 397 AQRKE 401
A K+
Sbjct: 183 AVSKD 187
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 221 (82.9 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 74/302 (24%), Positives = 139/302 (46%)
Query: 120 PTIRKSGAGNI---FIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQF 175
P+++ + A I +I +L +D L+ F+ G ++S KV + GQ GYGF++F
Sbjct: 51 PSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEF 110
Query: 176 DNEESAKSAIDKLNGMLLND--KQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
+ +A+ + N + Q+F + + D + ++V +L+ T+
Sbjct: 111 ASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT-IFVGDLAADVTDY 169
Query: 234 DLKKIF-GEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
L + F + + V+ D G++K +GFV F D + R++ +NG + +
Sbjct: 170 ILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
Query: 292 GKAQKKYEREMELKGKFEQSLKE-TADKF-EGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
G A K + + ++ S T D ++V LD S++DD LK +FS++G I
Sbjct: 230 GPAASK-KGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIV 288
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
K+ P G + GFV FS A +AL +NG + + ++ + +++ +
Sbjct: 289 HVKI---PAG--KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPS 343
Query: 410 QF 411
QF
Sbjct: 344 QF 345
Score = 196 (74.1 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 53/202 (26%), Positives = 106/202 (52%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT-RALD 99
+L++GDL ++++ LY F G++VS +V R+ T + GYG++ + A+H A R L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEF-ASHAAAERVLQ 121
Query: 100 ELNFTPLNGKP---IRIMYSYRDPTIRKSGAGN--IFIKNLDKSIDNKALHDTF-STFGN 153
N P+ P R+ ++ ++ + + IF+ +L + + L +TF +++ +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPS 181
Query: 154 ILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+ KV D + G+++GYGFV+F +E A+ ++NG+ + + + +GP K+
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQ 241
Query: 213 ADKTRFNNVYVKNLSETTTEDD 234
D Y + + TT++D
Sbjct: 242 RDS------YQSSAAGVTTDND 257
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 133 (51.9 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
G ++V NLD + KLKE+F GT+ V D +G SRG G V F EA +A++
Sbjct: 211 GATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAIS 270
Query: 381 EMNGKMVVSKPLYVAL 396
NG+M+ + ++V +
Sbjct: 271 MFNGQMLFDRQMHVKM 286
Score = 122 (48.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
R G IF++NL + + L + FS G ++ ++ ++ G+S+G G V+FD+ ESA+
Sbjct: 475 RSKGGCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMEN-GKSKGCGTVRFDSPESAE 533
Query: 183 SAIDKLNGMLLNDKQVFV 200
A +NG +N ++V V
Sbjct: 534 KACRLMNGTKINGREVDV 551
Score = 118 (46.6 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
GA IF+ NLD + K L + F G + V D G+SRG G V F+ A AI
Sbjct: 211 GA-TIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAI 269
Query: 186 DKLNGMLLNDKQVFV 200
NG +L D+Q+ V
Sbjct: 270 SMFNGQMLFDRQMHV 284
Score = 117 (46.2 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
G ++V+NL +S KLKE FS G + ++ + NG S+G G V F + E A KA
Sbjct: 479 GCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACR 537
Query: 381 EMNGKMVVSKPLYVAL 396
MNG + + + V L
Sbjct: 538 LMNGTKINGREVDVRL 553
Score = 114 (45.2 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
++V NL LK++FG G + V D DGKS+ G V F+ P +A +++ N
Sbjct: 214 IFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFN 273
Query: 281 GKKFDDKEWYV 291
G+ D++ +V
Sbjct: 274 GQMLFDRQMHV 284
Score = 110 (43.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 42/171 (24%), Positives = 76/171 (44%)
Query: 124 KSGAGNI---FIKNLDKSIDNKALHDTFSTFGNILSC--KVATDSLGQSRGYGFVQFDNE 178
+SG G + F +N D + +++ D+FS+ G +G G G + D
Sbjct: 386 RSGMGGMDRDFGRN-DLGM-SRSFGDSFSSLGGGFGGMGNSGMGPMGSGLGMGNMGMDR- 442
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN-NVYVKNLSETTTEDDLKK 237
S D+++ + D G F +D+++ ++V+NLS + LK+
Sbjct: 443 --MNSGFDRMSSSM--DMSRGFGQFGGSGYMGGMSDRSKGGCQIFVRNLSYDLSWQKLKE 498
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
F G + + + +GKSK G V FD P+ A ++ +NG K + +E
Sbjct: 499 KFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACRLMNGTKINGRE 548
Score = 98 (39.6 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 207 QERESTADK--TRFNNVYVKNLSETTTEDDLKKIFGE-FGIITSTAVMRDADGKSKCFGF 263
+ER ADK T N V++ N+ +K + E G +T + +D +GKS+ G
Sbjct: 67 KERSGGADKKTTHRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGV 126
Query: 264 VNFDDPDDAARSVEA-----LNGKKFDDKEWYVGK-AQKKYEREMELKG 306
V F D + +++E LNG+ + KE G+ A++ +R + G
Sbjct: 127 VEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHARRVLQRSGRMYG 175
Score = 85 (35.0 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 130 IFIKNLDKSIDNKALHDTF-STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID-- 186
+FI N+ +A+ D G + ++ D G+SRG G V+F +EE K AI+
Sbjct: 83 VFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIEVM 142
Query: 187 ---KLNGMLLNDKQ 197
LNG LN K+
Sbjct: 143 SKHDLNGRPLNIKE 156
Score = 66 (28.3 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYV 86
+GG D + +++ ++ + DL + +G+V V + +D +S G G V
Sbjct: 70 SGGA-DKKTTHRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKD-GEGKSRGCGVV 127
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRI 113
+ +A++ ++ LNG+P+ I
Sbjct: 128 EFKDEEFVKKAIEVMSKHDLNGRPLNI 154
Score = 66 (28.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ +++V +LD V +L ++F G V V D +S G G V + EA +A
Sbjct: 210 LGATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKED-KDGKSRGMGTVTFEQPLEAVQA 268
Query: 98 LDELN 102
+ N
Sbjct: 269 ISMFN 273
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 202 (76.2 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 49/173 (28%), Positives = 84/173 (48%)
Query: 22 TNGIANNGGVGDA-RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
TN +NN + Q T+LY+ L D L L G++VS + D +T +
Sbjct: 42 TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQC 101
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
GYG+V++++ A +A+ L + + + +DPT N++I NL S+D
Sbjct: 102 KGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMD 152
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
+ L + FG+++S ++ D+ G SRG GF + ++ E + I NG L
Sbjct: 153 EQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
Score = 176 (67.0 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 45/155 (29%), Positives = 78/155 (50%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
N++I+ L ++ L +G I+S K D + Q +GYGFV FD+ +A+ A+
Sbjct: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
L N Q + ++QE++ T N+Y+ NL + E +L+ + FG + S
Sbjct: 122 LKA---NGVQAQMA---KQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVIS 168
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
T ++RDA+G S+ GF + + ++ NGK
Sbjct: 169 TRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
Score = 141 (54.7 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
A +K ++ G Q K+ + NLY+ NL S+ + +L+ + FG + S ++
Sbjct: 114 AAQKAVASLKANGVQAQMAKQQEQ--DPTNLYISNLPISMDEQELENMLKPFGHVISTRI 171
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+RD NG+SRG GF + E+ + NGK + + P
Sbjct: 172 LRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPP 209
Score = 109 (43.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDP 269
S+ ++ N+Y++ L TT+ DL K+ +G I ST + D + + K +GFV+FD P
Sbjct: 53 SSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSP 112
Query: 270 DDAARSVEAL--NG 281
A ++V +L NG
Sbjct: 113 AAAQKAVASLKANG 126
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 170 (64.9 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 56/194 (28%), Positives = 89/194 (45%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
++V + E DLK IF +FG I V++D G K F+ + D A ++ AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K R +++K +S E D+ L+V L +D+ ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVAL 396
++F FGTI C V+R P+G S+G FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 397 AQRKEERRARLQAQ 410
A ++ER R Q
Sbjct: 173 ADTEKERGLRRMQQ 186
Score = 140 (54.3 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 41/151 (27%), Positives = 70/151 (46%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY---NAAHEATRAL 98
L+VG + + + L +F Q G++ + V +D T G ++ Y ++A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R +F+ L K ++ + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECT 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
V G S+G FV+F A++AI+ L+
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 140 (54.3 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 41/166 (24%), Positives = 78/166 (46%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQF---DN 177
+++ A +F+ + + ++ K L F FG I V D G +G F+ + D+
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+SA+ + + ++ + V P + ES + + ++V L + T++D++K
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKP----ADSESRGEDRK---LFVGMLGKQQTDEDVRK 113
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F FG I V+R DG SK FV F +A ++ L+ +
Sbjct: 114 MFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 131 (51.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGF 263
++Q+++ + N+++ +L + T+ ++ ++F FG + S V D A +SKCFGF
Sbjct: 362 QQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 421
Query: 264 VNFDDPDDAARSVEALNG 281
V+FD+P A +++A+NG
Sbjct: 422 VSFDNPASAQAAIQAMNG 439
Score = 128 (50.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
NIFI +L + + + F FG+++S KV D + QS+ +GFV FDN SA++AI
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 437 MNGFQIGMKRLKV 449
Score = 118 (46.6 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFV 367
+Q ++ + +G N+++ +L +D ++ ++F FG + S KV D S+ GFV
Sbjct: 363 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 422
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+F A A+ MNG + K L V L + K+ R
Sbjct: 423 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 459
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 170 (64.9 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 56/194 (28%), Positives = 89/194 (45%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
++V + E DLK IF +FG I V++D G K F+ + D A ++ AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ +K R +++K +S E D+ L+V L +D+ ++
Sbjct: 69 HEQK----------TLPGMNRPIQVKPADSESRGE--DR----KLFVGMLGKQQTDEDVR 112
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYVAL 396
++F FGTI C V+R P+G S+G FV F T EA A+ ++ + S L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 397 AQRKEERRARLQAQ 410
A ++ER R Q
Sbjct: 173 ADTEKERGLRRMQQ 186
Score = 140 (54.3 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 41/151 (27%), Positives = 70/151 (46%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY---NAAHEATRAL 98
L+VG + + + L +F Q G++ + V +D T G ++ Y ++A +A AL
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E P +PI++ + D R +F+ L K ++ + F FG I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECT 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
V G S+G FV+F A++AI+ L+
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 140 (54.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 41/166 (24%), Positives = 78/166 (46%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQF---DN 177
+++ A +F+ + + ++ K L F FG I V D G +G F+ + D+
Sbjct: 1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS 60
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+SA+ + + ++ + V P + ES + + ++V L + T++D++K
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKP----ADSESRGEDRK---LFVGMLGKQQTDEDVRK 113
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
+F FG I V+R DG SK FV F +A ++ L+ +
Sbjct: 114 MFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 159
Score = 131 (51.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGF 263
++Q+++ + N+++ +L + T+ ++ ++F FG + S V D A +SKCFGF
Sbjct: 366 QQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 425
Query: 264 VNFDDPDDAARSVEALNG 281
V+FD+P A +++A+NG
Sbjct: 426 VSFDNPASAQAAIQAMNG 443
Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
NIFI +L + + + F FG+++S KV D + QS+ +GFV FDN SA++AI
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 188 LNGMLLNDKQVFV 200
+NG + K++ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 118 (46.6 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFV 367
+Q ++ + +G N+++ +L +D ++ ++F FG + S KV D S+ GFV
Sbjct: 367 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 426
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
+F A A+ MNG + K L V L + K+ R
Sbjct: 427 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 198 (74.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 46/172 (26%), Positives = 94/172 (54%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKL 188
+++ ++ + + F+ FG I S ++ DS+ +G+ FV+++ E+A+ A++++
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 189 NGMLLNDKQVFVG-PFLRKQER---ESTADKTR-FNNVYVKNLSETTTEDDLKKIFGEFG 243
N ++L + + VG P Q + + A++ R FN +YV ++ + ++DD+K +F FG
Sbjct: 162 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 221
Query: 244 IITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
I S + RD GK K +GF+ ++ + +V ++N + VGKA
Sbjct: 222 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 187 (70.9 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 48/166 (28%), Positives = 83/166 (50%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
VYV ++ ED +++ F FG I S + D+ K K F FV ++ P+ A ++E +
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN-LYVKNLDDSISDDKL 338
N + VG+ G+ + + + A++ N +YV ++ +SDD +
Sbjct: 162 NSVMLGGRNIKVGRPSNI--------GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 213
Query: 339 KELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMN 383
K +F FG I SC + RDP G +G GF+ + A+ + A++ MN
Sbjct: 214 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 259
Score = 176 (67.0 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 42/170 (24%), Positives = 84/170 (49%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+YVG + + + + F G + S+ + D T + G+ +V Y A AL+++
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 102 NFTPLNGKPIRI----MYSYRDPTI----RKSGAGN-IFIKNLDKSIDNKALHDTFSTFG 152
N L G+ I++ P I ++ A N I++ ++ + + + + F FG
Sbjct: 162 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 221
Query: 153 NILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
I SC +A D + G+ +GYGF++++ +S++ A+ +N L + + VG
Sbjct: 222 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271
Score = 112 (44.5 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
+AR F +YV + ++D + +F G++ S + RD +T + GYG++ Y A
Sbjct: 192 EARAF--NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQ 249
Query: 93 EATRALDELNFTPLNGKPIRI 113
+ A+ +N L G+ +R+
Sbjct: 250 SSQDAVSSMNLFDLGGQYLRV 270
Score = 70 (29.7 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 27/105 (25%), Positives = 51/105 (48%)
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG- 262
LRKQE ST R N V K++ + E ++ + G+FG + + ++ G+ +
Sbjct: 427 LRKQE--STVMVLR-NMVDPKDIDDDL-EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEI 482
Query: 263 ----FVNFDDPDDAARSVEALNGKKFDDKEWYVGK--AQKKYERE 301
FV F + ++++ALNG+ W+ G+ + Y++E
Sbjct: 483 IVKIFVEFSVASETHKAIQALNGR------WFAGRKVVAEVYDQE 521
Score = 68 (29.0 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG-----FVAFSTAEEASKALTE 381
K++DD + + +E +FG + + ++ G + FV FS A E KA+
Sbjct: 444 KDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQA 502
Query: 382 MNGKMVVSKPLYVALAQRKEERRARLQA 409
+NG+ + + + ++ + L A
Sbjct: 503 LNGRWFAGRKVVAEVYDQERFDNSDLSA 530
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 221 (82.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 52/184 (28%), Positives = 103/184 (55%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
+N G D + T+L++G+L+ V ++ + ++N +G+ V V++ R+ T + GY +
Sbjct: 79 SNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCF 138
Query: 86 VNYNAAHEATRALDELNFTPLNGKP--IRIMYS----YRDPTIRKSGAGNIFIKNLDKSI 139
V + + HEA+ A+ +N P+ G ++ ++ R+ +I K+ +IF+ +L ++
Sbjct: 139 VEFASPHEASSAMS-MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNV 197
Query: 140 DNKALHDTF-STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ ++ F S + + S K+ TD SRGYGFV+F +E KSA+ ++ G + D+
Sbjct: 198 NEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRP 257
Query: 198 VFVG 201
+ VG
Sbjct: 258 IRVG 261
Score = 179 (68.1 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 69/286 (24%), Positives = 122/286 (42%)
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQ 174
S RD + + +++ L+ + + ++T G + K+ + G + GY FV+
Sbjct: 83 SSRDENVYQKTT--LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE-RESTADKTRFNNVYVKNLSETTTED 233
F + A SA+ N + +F + RE + K +++V +LS E
Sbjct: 141 FASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEF 200
Query: 234 DLKKIFGE-FGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
D+ +F + S +M D S+ +GFV F D +D ++ + G+ D+ V
Sbjct: 201 DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
Query: 292 GKAQKKYERE-----------MELKGKFE--QSLKETADKFEGLNLYVKNLDDSISDDKL 338
G A K + M G + Q + + AD ++V L +S+++L
Sbjct: 261 GLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANS-TVFVGGLSKFVSEEEL 319
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
K LF FG I K+ P G +G GFV F + A A+ ++ G
Sbjct: 320 KYLFQNFGEIVYVKI---PPG--KGCGFVQFVNRQSAEIAINQLQG 360
Score = 146 (56.5 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 52/204 (25%), Positives = 96/204 (47%)
Query: 208 ERESTADKTRFNNVYVKN------LSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKC 260
E S +R NVY K L TE +++++ G ++R+ G +
Sbjct: 76 ENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAG 135
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+ FV F P +A+ S ++N K ++ K + L+ E+S+ + ++
Sbjct: 136 YCFVEFASPHEAS-SAMSMNNKPIPGTN-HLFKLN--WASGGGLR---EKSISKASE--- 185
Query: 321 GLNLYVKNLDDSISDDKLKELF-SEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKA 378
+++V +L ++++ + LF S + + S K+M DP +SRG GFV F+ + A
Sbjct: 186 -YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSA 244
Query: 379 LTEMNGKMVVSKPLYVALAQRKEE 402
L EM G++ +P+ V LA K +
Sbjct: 245 LAEMQGQICGDRPIRVGLATPKSK 268
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 169 (64.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 52/200 (26%), Positives = 95/200 (47%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG---KSKCFGFVNFDDPDDAARSVE 277
++V + + +E +LK++F +G + V+RD +SK FV F A +
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
AL+ K +++K + E ++ E L++ + +++
Sbjct: 102 ALHNIK----------TLPGMHHPIQMK----PADSEKSNAVEDRKLFIGMVSKKCNEND 147
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SKPLYV 394
++ +FS FG I C+++R P+G+SRG FV FST A A+ M+ + S P+ V
Sbjct: 148 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVV 207
Query: 395 ALAQ-RKEERRARLQAQFSQ 413
A +K++ + RLQ Q +Q
Sbjct: 208 KFADTQKDKEQRRLQQQLAQ 227
Score = 150 (57.9 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 53/180 (29%), Positives = 81/180 (45%)
Query: 22 TNGIAN--NGGV--GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
+NG AN NG + D + ++VG + S ++ +L +LF G V + V RD S
Sbjct: 18 SNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 77
Query: 78 R--RSLGYGYVNY---NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA---GN 129
+S G +V + AA EA AL + P PI++ + KS A
Sbjct: 78 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQM----KPADSEKSNAVEDRK 133
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+FI + K + + FS FG I C++ G SRG FV F A++AI ++
Sbjct: 134 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 193
Score = 122 (48.0 bits), Expect = 0.00023, P = 0.00023
Identities = 30/87 (34%), Positives = 51/87 (58%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSA 184
GA N+FI +L + ++ + F FGN++S KV D S+ +GFV +DN SA++A
Sbjct: 422 GA-NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 480
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERES 211
I +NG + K++ V L++ + +S
Sbjct: 481 IQAMNGFQIGMKRLKVQ--LKRSKNDS 505
Score = 120 (47.3 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKA 378
EG NL++ +L D + ++F FG + S KV D +S+ GFV++ A A
Sbjct: 421 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 480
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERR 404
+ MNG + K L V L + K + +
Sbjct: 481 IQAMNGFQIGMKRLKVQLKRSKNDSK 506
Score = 118 (46.6 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 35/154 (22%), Positives = 68/154 (44%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD---SLGQSRGYGFVQFDNEESAKSAID 186
+F+ + +S K L + F +G + V D + QS+G FV F ++A A +
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
L+ + P K ++ +++ +S+ E+D++ +F FG I
Sbjct: 102 ALHN--IKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
++R DG S+ FV F A +++A++
Sbjct: 160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 193
Score = 114 (45.2 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVEA 278
N+++ +L + + D+ ++F FG + S V D SKCFGFV++D+P A +++A
Sbjct: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
Query: 279 LNG 281
+NG
Sbjct: 484 MNG 486
WARNING: HSPs involving 1332 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 467 422 0.00083 118 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1582
No. of states in DFA: 602 (64 KB)
Total size of DFA: 222 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.29u 0.18s 39.47t Elapsed: 00:00:02
Total cpu time: 39.40u 0.18s 39.58t Elapsed: 00:00:02
Start: Fri May 10 00:16:40 2013 End: Fri May 10 00:16:42 2013
WARNINGS ISSUED: 2