BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012257
(467 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/453 (98%), Positives = 450/453 (99%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF
Sbjct: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP
Sbjct: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES
Sbjct: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG
Sbjct: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER
Sbjct: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI
Sbjct: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP 420
SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP
Sbjct: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP 420
Query: 421 RMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYSF 453
RMPMYPPVAPGLGQQLFYGQGPPIIPPQ + +
Sbjct: 421 RMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 453
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/458 (81%), Positives = 412/458 (89%), Gaps = 16/458 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
M+QVQ QPQ PV+ A G+A+NGG QFVSTSLYVGDL+ +V ++QLYDLF
Sbjct: 1 MSQVQSQPQGPVS-------APVGMASNGG----NQFVSTSLYVGDLEQNVTETQLYDLF 49
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQ+VS+RVCRDL++RRSLGYGYVNYN H+A +AL+ LNFTP+NGKPIRIMYSYRDP
Sbjct: 50 NQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEVLNFTPVNGKPIRIMYSYRDP 109
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
TIRKSGAGNI+IKNLDK+IDNKALHDTFS FGNILSCKVATDS GQS GYGFVQFDNEES
Sbjct: 110 TIRKSGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEES 169
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
AK+AIDKLNGMLLNDKQV+VGPFLR+QERES DKT+FNNVYVKNLSETTTE+DLKKIFG
Sbjct: 170 AKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFG 229
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS VMRD DGKS+CFGFVNF++PDDAARSVEALNGK FD+KEWYVGKAQKK ER
Sbjct: 230 EYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSER 289
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQ+LKET DKFEGLNLYVKNLDDSI+DDKLKELFSEFGTITSCKVMRDPNG+
Sbjct: 290 EVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGV 349
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----P 416
S+GSGFVA+STAEEASKALTEMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMR P
Sbjct: 350 SKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPAMAP 409
Query: 417 PVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
VGPRMPMYP PG+GQQLFYGQGPP I+PPQ + +
Sbjct: 410 AVGPRMPMYPHGTPGIGQQLFYGQGPPAIVPPQPGFGY 447
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/458 (80%), Positives = 410/458 (89%), Gaps = 16/458 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQVQPQAPV+ A NG+ +NG QFV TSLYVGDL+ +V ++QLYDLF
Sbjct: 1 MAQVQVQPQAPVS-------APNGVVSNG----VNQFVPTSLYVGDLEQNVTETQLYDLF 49
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ GQVVS+RVCRDL++RRSLGYGYVNYN H+A +A++ LNFTP+NGKPIRIMYSYRDP
Sbjct: 50 NQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEVLNFTPVNGKPIRIMYSYRDP 109
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
TIRKSG GNI+IKNLDK+IDNKALHDTFS FG+ILSCKVATDSLGQS GYGFVQFDNEES
Sbjct: 110 TIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEES 169
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
AK+AIDKLNGMLLNDKQV+VGPFLRKQERES DK FNNVYVKNLSETTTE+DLKKIFG
Sbjct: 170 AKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFG 229
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS VMRD +GKS+CFGFVNF++PDDAA+SVEALNGK FD+KEWYVGKAQKK ER
Sbjct: 230 EYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSER 289
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQ+LKET DKF+GLNLYVKNLDDSI+DDKLKELFSEFGTITSCKVMRDPNG+
Sbjct: 290 EVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGV 349
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----P 416
SRGSGFVAFSTAEEAS+ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ+SQ+R P
Sbjct: 350 SRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRPAMAP 409
Query: 417 PVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P+GPRMP+YPP PG+G QLFYGQGPP I+PPQ + +
Sbjct: 410 PIGPRMPIYPPGTPGIGHQLFYGQGPPAIVPPQPGFGY 447
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/424 (81%), Positives = 382/424 (90%), Gaps = 6/424 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QFVSTSLYVGDL+ +V DS LYDLF Q+G VVSVRVCRDLSTRRSLGYGYVNY +A
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAA 87
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD LNFTPLNGKPIRIMYS+RDP+IR+SG NIFIKNLDK+IDNKAL+DTFSTFG IL
Sbjct: 88 RALDMLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAIL 147
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+ATD+ GQS+GYGFVQFDNEESAK+A DKLNGMLLNDKQV+VGPF+RKQERES +K
Sbjct: 148 SCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNK 207
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
T+FNNVYVKNL E+TT++DLK IFGE+G ITS VM+D DGKSKCFGFVNF++ DDAARS
Sbjct: 208 TKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARS 267
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALNGKKFDDKEWYVGKAQKK ERE+ELKG+FEQSLKE DKF+GLNLYVKNLDDSI+D
Sbjct: 268 VEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIAD 327
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
DKL+ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS+AL +MNGKMV SKPLYVA
Sbjct: 328 DKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVA 387
Query: 396 LAQRKEERRARLQAQFSQMRPP-----VGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQV 449
LAQRKE+RRARLQAQFSQMRP VGPRM MYPP APGLGQQLFYGQGPP +IPPQ
Sbjct: 388 LAQRKEDRRARLQAQFSQMRPAAMAPSVGPRMSMYPPGAPGLGQQLFYGQGPPALIPPQP 447
Query: 450 IYSF 453
+ +
Sbjct: 448 GFGY 451
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/459 (76%), Positives = 392/459 (85%), Gaps = 18/459 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQV PQ + G QFV+TSLYVGDLD +V D+QLYDLF
Sbjct: 1 MAQVQVPPQNAIPGPNG------------GGAAGNQFVTTSLYVGDLDPNVTDAQLYDLF 48
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVN++ +A RALD LNFTPLN +PIRIMYS+RDP
Sbjct: 49 NQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDP 108
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG GNIFIKNLD++ID+KALHDTFSTFGNILSCKVATDS GQS+GYGFVQFDNEES
Sbjct: 109 SIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEES 168
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQERESTADK +FNNV+VKNLSE+TT+D+LK +FG
Sbjct: 169 AQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFG 228
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD DGKSKCFGFVNF++ DDAAR+VEALNGKKFDDKEWYVGKAQKK ER
Sbjct: 229 EFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSER 288
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK +FEQS+KE ADK++G NLYVKNLDDS+ DDKLKELFS FGTITSCKVMRDPNGI
Sbjct: 289 ENELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGI 348
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST +EAS+AL EMNGKMVVSKPLYV LAQRKE+RRARLQAQF+QMR
Sbjct: 349 SRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMP 408
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P VGPR+PMYPP PG+GQQ+FY QGPP IIP Q + +
Sbjct: 409 PSVGPRVPMYPPGGPGIGQQIFYAQGPPAIIPSQPGFGY 447
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/459 (78%), Positives = 396/459 (86%), Gaps = 28/459 (6%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+Q A A P NG+AN + SLYVGDLD+++ DSQLYDLF
Sbjct: 1 MAQIQ-------AAVAGP----NGVAN-----------TASLYVGDLDVNITDSQLYDLF 38
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
Q GQV+SVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLNGKPIRIMYS+RDP
Sbjct: 39 IQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDP 98
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG NIFIKNLDKSIDNKALHDTFS FGNILSCK+ATD GQS+GYGFVQFDNEES
Sbjct: 99 SIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEES 158
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQERE+ +KT+FNNVYVKNLSE+TTE+DLK IFG
Sbjct: 159 AQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFG 218
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFGIITS VMRD DGKSKCFGFVNF++ DDAA +VEALNGKKFD+KEWYVGKAQKKYER
Sbjct: 219 EFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYER 278
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQS+KE DKF+G+NLY+KNLDDSI DDKLKELFSEFGTITSCKVMRDP+GI
Sbjct: 279 ELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGI 338
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST+EEAS+ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR
Sbjct: 339 SRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMA 398
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P V PRMPMYPP APGLGQQLFYGQGPP IIPPQ + +
Sbjct: 399 PSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGY 437
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/459 (78%), Positives = 396/459 (86%), Gaps = 28/459 (6%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+Q A A P NG+AN + SLYVGDLD+++ DSQLYDLF
Sbjct: 1 MAQIQ-------AAVAGP----NGVAN-----------TASLYVGDLDVNITDSQLYDLF 38
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
Q GQV+SVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLNGKPIRIMYS+RDP
Sbjct: 39 IQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDP 98
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG NIFIKNLDKSIDNKALHDTFS FGNILSCK+ATD GQS+GYGFVQFDNEES
Sbjct: 99 SIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEES 158
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQERE+ +KT+FNNVYVKNLSE+TTE+DLK IFG
Sbjct: 159 AQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFG 218
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFGIITS VMRD DGKSKCFGFVNF++ DDAA +VEALNGKKFD+KEWYVGKAQKKYER
Sbjct: 219 EFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYER 278
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQS+KE DKF+G+NLY+KNLDDSI DDKLKELFSEFGTITSCKVMRDP+GI
Sbjct: 279 ELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGI 338
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST+EEAS+ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR
Sbjct: 339 SRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMA 398
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P V PRMPMYPP APGLGQQLFYGQGPP IIPPQ + +
Sbjct: 399 PSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGY 437
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/459 (76%), Positives = 390/459 (84%), Gaps = 15/459 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQV PQ + G G QFV+TSLYVGDLD +V D+QLYDLF
Sbjct: 1 MAQVQVPPQNAMPGPN---------GGGGAGGAGNQFVTTSLYVGDLDPNVTDAQLYDLF 51
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVN++ +A RALD LNFTPLN +PIRIMYS+RDP
Sbjct: 52 NQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDP 111
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG GNIFIKNLD++ID+KALHDTFSTFGNILSCKVATDS GQS+GYGFVQFDNEES
Sbjct: 112 SIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEES 171
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQERES ADK +FNNV+VKNLSE+TT+D+LK FG
Sbjct: 172 AQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFG 231
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD DGKSKCFGFVNF++ DDAAR+VEALNGK FDDKEWYVGKAQKK ER
Sbjct: 232 EFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSER 291
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK +FEQS+KE ADK++G NLYVKNLDDSI D+KLKELFS FGTITSCKVMRDPNG+
Sbjct: 292 ENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGL 351
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST EEAS+AL EMNGKMVVSKPLYV LAQRKE+RRARLQAQF+QMR
Sbjct: 352 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMP 411
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P VGPR+PMYPP PG+GQQLFY QGPP IIP Q + +
Sbjct: 412 PSVGPRVPMYPPGGPGIGQQLFYSQGPPAIIPSQPGFGY 450
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/459 (75%), Positives = 398/459 (86%), Gaps = 8/459 (1%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QVQ Q+PVA A G A STSLYVGDL+ +V DSQLYDLF
Sbjct: 1 MAQIQVQHQSPVAGGNGVVAAAVGGAAAVATPGG--LTSTSLYVGDLEFNVTDSQLYDLF 58
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDLSTRRSLGYGYVNY+ ++A+RA++ LNFTP+NGK IR+MYS+RDP
Sbjct: 59 NQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEMLNFTPVNGKSIRVMYSHRDP 118
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
T+RKSG+ NIFIKNLDKSIDNKALHDTFS+FGNILSCK+ATDS GQS+GYGFVQ+DNEES
Sbjct: 119 TLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEES 178
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AIDKLNGML+NDKQV+VG FLRKQEREST T+F NVYVKNLSE+TT+D+LKK+FG
Sbjct: 179 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFG 238
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRDADGKSKCFGF+NF+ +DAA++VE+LNGKKFDDKEWYVGKAQKK ER
Sbjct: 239 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 298
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK KFEQ+ KE DK++GLNLYVKNLDD+I D+KLKELFSEFGTITSCKVMRDP+GI
Sbjct: 299 EQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGI 358
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST+EEAS+AL+EMNGKM+VSKPLYVALAQRKEERRA+LQAQFSQ+R
Sbjct: 359 SRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQLRPVAMP 418
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P + PRMP+YPP APG+GQQLFYGQGPP +IPPQ + +
Sbjct: 419 PSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAGFGY 457
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/459 (76%), Positives = 390/459 (84%), Gaps = 12/459 (2%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQVQPQ A P G A G FV+TSLYVGDLD++V DSQLYDLF
Sbjct: 1 MAQVQVQPQN-----AMTGP-NGGAAAAAAAGGGGNFVTTSLYVGDLDMNVTDSQLYDLF 54
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVNY+ +A RALD LNFTPLN +PIRIMYS+RDP
Sbjct: 55 NQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDP 114
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG GNIFIKNLDK+ID+KALHDTFS+FGNILSCKVA D GQS+GYGFVQFD EE+
Sbjct: 115 SIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEA 174
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQEREST D+ +FNNV+VKNLSE+TT+D+LKK FG
Sbjct: 175 AQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFG 234
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD DGKSKCFGFVNF+ DDAAR+VEALNGKK DDKEWYVGKAQKK ER
Sbjct: 235 EFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSER 294
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK KFEQS+KE ADK++G NLYVKNLDDSI+D+KLKELFS +GTITSCKVMRDPNG+
Sbjct: 295 EHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGV 354
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST EEAS+AL EMNGKMV SKPLYV LAQRKE+RRARLQAQF+QMR
Sbjct: 355 SRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMP 414
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P V PRMPMYPP PG+GQQ+FYGQGPP IIP Q + +
Sbjct: 415 PSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGY 453
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/446 (77%), Positives = 384/446 (86%), Gaps = 24/446 (5%)
Query: 1 MAQVQV--QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQV QPQ+ N ANN FV+TSLYVGDL+ SV DSQLYD
Sbjct: 1 MAQVQVPVQPQS-----------VNAGANN------PNFVTTSLYVGDLEASVTDSQLYD 43
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
LFNQ+GQVVSVRVCRDL++RRSLGYGYVNY+ +A RAL+ LNFTPLNG PIR+MYS+R
Sbjct: 44 LFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEMLNFTPLNGSPIRVMYSHR 103
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DPTIRKSGAGNIFIKNLDK+ID+KALHDTFS FGNILSCKVATD GQS+GYGFVQFD+E
Sbjct: 104 DPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSE 163
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E+A+ AI+KLNGMLLNDKQV+VGPFLRKQER++ DK RFNNV+VKNLSETTTE+DL K
Sbjct: 164 EAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKT 223
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGEFG ITS VMRD DGKSKCFGFVNF++ +DAA++VEALNGKK DDKEW+VGKAQKKY
Sbjct: 224 FGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKY 283
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE+ELK +FEQS+KE ADKF+G NLY+KNLDDSI D+KLKELFS FGTITSCKVMRDPN
Sbjct: 284 EREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPN 343
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR--- 415
GISRGSGFVAFST EEAS+AL EMNGK+VVSKPLYVALAQRKE+RRARLQAQFSQMR
Sbjct: 344 GISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQMRPVA 403
Query: 416 --PPVGPRMPMYPPVAPGLGQQLFYG 439
P VGPRMPMYPP PGLGQQ+FYG
Sbjct: 404 MAPSVGPRMPMYPPAGPGLGQQIFYG 429
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/451 (76%), Positives = 391/451 (86%), Gaps = 17/451 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQV QPQ P + A PA NG AN Q V+TSLYVGDLD++V DSQLYDLF
Sbjct: 1 MAQVPPQPQVPNSGA---DPAANGGAN--------QHVTTSLYVGDLDVNVTDSQLYDLF 49
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVNY+ +A+RALD LNFTPLNG PIR+MYS+RDP
Sbjct: 50 NQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDP 109
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG+GNIFIKNLDK+ID+KALHDTFS FG+ILSCKVATDS GQS+G+GFVQFD EE+
Sbjct: 110 SVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEA 169
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A AI+KLNGMLLNDKQVFVGPFLRKQERES ++KT+FNNV+VKNL+ETT+E+DLK +FG
Sbjct: 170 ALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFG 229
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD +GKSKCFGFVNF++ DDAARSVEALNGKK D KEWYVGKAQKK ER
Sbjct: 230 EFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSER 289
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELK +FEQS+KE ADK++G NLYVKNLDDSI DDKLKELF+ FGTITSCKVMRDPNGI
Sbjct: 290 EVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGI 349
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP---- 416
SRGSGFVAFS+ EEA++AL EMNG+M+VSKPLYVALAQRKE+RRARLQAQFSQM+P
Sbjct: 350 SRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMA 409
Query: 417 -PVGPR-MPMYPPVAPGLGQQLFYGQGPPII 445
V PR MPMYPP PG+GQQ+FYGQ PP I
Sbjct: 410 SSVAPRGMPMYPPGGPGIGQQIFYGQAPPTI 440
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/444 (78%), Positives = 381/444 (85%), Gaps = 21/444 (4%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQV PV G NGG +V+TSLYVGDL+ +V DS LYDLF
Sbjct: 1 MAQVQV----PV----------QGQNVNGGANAP--YVTTSLYVGDLEANVTDSHLYDLF 44
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVNY++ +A RALD LNFTPLNG PIRIMYS+RDP
Sbjct: 45 NQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALDMLNFTPLNGSPIRIMYSHRDP 104
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG+GNIFIKNLDK ID+KALHDTFS FGNILSCKVATDS GQS+GYGFVQFDNEES
Sbjct: 105 SVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEES 164
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQERES DKTRFNNVYVKNLSETTTE+DLKK FG
Sbjct: 165 AQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFG 224
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS VMRD DGK+KCFGFVNF++ DDAA +VEALNGKKFDDKEW+VGKAQKK ER
Sbjct: 225 EYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNER 284
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK +FEQS+KE ADKF+G NLY+KNLDDSI DD+LK+LFS FGTITSCKVMRDPNGI
Sbjct: 285 ENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGI 344
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST EEASKAL EMNGKMVVSKPLYVALAQRKE+RRARLQAQFSQ+R
Sbjct: 345 SRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMA 404
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYG 439
P V PRMPMYPP PGLGQQ+FYG
Sbjct: 405 PSVAPRMPMYPPGGPGLGQQIFYG 428
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/452 (75%), Positives = 388/452 (85%), Gaps = 18/452 (3%)
Query: 3 QVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
QVQ QPQ ++ +PA NG AN FV+TSLYVGDLDL+V DSQLYD+FNQ
Sbjct: 4 QVQAQPQNAISGI---NPAANGGAN---------FVTTSLYVGDLDLNVTDSQLYDIFNQ 51
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+GQVVSVRVCRDL+TRRSLGYGYVNY+ +A RALD LNFTPLNGKPIR+MYS+RDP+I
Sbjct: 52 VGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSI 111
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RKSGAGNIFIKNLDK+ID+KALHDTFS FG+ILSCKVA DS GQS+GYGFVQFDNEESA
Sbjct: 112 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAL 171
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI+KLNGMLLNDKQV+VGPFLRKQER+ DK++FNNV+VKNLSETTTE+DL K F EF
Sbjct: 172 KAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEF 231
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G +TS VMRDADGKS+CFGFVNF++ DDAAR+V+ LNGK DDKEWYVGKAQKK ERE+
Sbjct: 232 GTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREV 291
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
ELK +FEQ++KE ADK++G NLY+KNLDDSI DDKLKELF+ FGTITSCKVMRDPNGISR
Sbjct: 292 ELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISR 351
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-----PP 417
GSGFVAFST +EAS+AL EMNGKMVVSKPLYVALAQRKE+RRARLQAQFSQ+R
Sbjct: 352 GSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPAS 411
Query: 418 VGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQ 448
V PRMP+YPP PG+GQQLFYGQ PP +IP Q
Sbjct: 412 VAPRMPIYPPGGPGIGQQLFYGQAPPAMIPSQ 443
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/459 (73%), Positives = 396/459 (86%), Gaps = 11/459 (2%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MA++QVQ Q+PV+ A P G+AN +A QFV+TSLYVGDLD +VNDSQLYDLF
Sbjct: 1 MAEIQVQHQSPVSAA---PPPNGGVAN--APNNANQFVTTSLYVGDLDQNVNDSQLYDLF 55
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVN++ +A RALD LNFTPLN + IRIMYS+RDP
Sbjct: 56 NQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDP 115
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG NIFIKNLDK+ID+KALHDTFS+FG ILSCK+ATD+ G S+GYGFVQFDNEE+
Sbjct: 116 SLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEA 175
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQ+RE+ KT+FNNVYVKNLSE+TT+++L FG
Sbjct: 176 AQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFG 235
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS +MRDADGKS+CFGFVNF++PDDAA++VE LNGKKFDDKEWYVGKAQKK ER
Sbjct: 236 EYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSER 295
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELKG+FEQS+KE ADK+ GLNLY+KNLDD+ISD+KLKE+F+++GTITSCKVMRDP GI
Sbjct: 296 EQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGI 355
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST EEA++AL EMNGKM KPLYVALAQRKEERRARLQAQFSQMR
Sbjct: 356 SRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMRPVAIT 415
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P V PRMP+YPP APGLGQQ YGQGPP ++PPQ + +
Sbjct: 416 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGY 454
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/451 (75%), Positives = 390/451 (86%), Gaps = 17/451 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQV QPQ P + A PA NG AN Q V+TSLYVGDLD++V DSQLYDLF
Sbjct: 1 MAQVPPQPQVPNSGA---DPAANGGAN--------QHVTTSLYVGDLDVNVTDSQLYDLF 49
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVNY+ +A+RALD LNFTPLNG PIR+MYS+RDP
Sbjct: 50 NQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDP 109
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG+GNIFIKNLDK+ID+KALHDTFS FG+ILSCKVATDS GQS+G+GFVQFD EE+
Sbjct: 110 SVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEA 169
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A AI+KLNGMLLNDKQVFVGPFLRKQERES ++KT+FNNV+VKNL+ETT+E+DLK +FG
Sbjct: 170 ALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFG 229
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD +GKSKCFGFVNF++ DDAARSVEALNGKK D KEWYVGKAQKK ER
Sbjct: 230 EFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSER 289
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELK +FEQS+KE ADK++G NLYVKNLDDSI DDKLKELF+ FGTITSCKVMRDPNGI
Sbjct: 290 EVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGI 349
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP---- 416
SRGSGFVAFS+ EEA++AL EMNG+M+VSKPLYVALAQRKE+R ARLQAQFSQM+P
Sbjct: 350 SRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMA 409
Query: 417 -PVGPR-MPMYPPVAPGLGQQLFYGQGPPII 445
V PR MPMYPP PG+GQQ+FYGQ PP I
Sbjct: 410 SSVAPRGMPMYPPGGPGIGQQIFYGQAPPTI 440
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/458 (74%), Positives = 390/458 (85%), Gaps = 15/458 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QV AA P P NG+A G A QFV TSLYVGDLD +V DSQLYDLF
Sbjct: 1 MAQIQVH------QAAAPVPGPNGVAAGPG---AIQFVPTSLYVGDLDFNVTDSQLYDLF 51
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLN KP+RIMYS+RDP
Sbjct: 52 NQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPLRIMYSHRDP 111
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG NIFIKNLDK+ID+KALHDTFS+FGNILSCKVATD+ GQS+GYGFVQFD+EE+
Sbjct: 112 SIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEA 171
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQER+S +FNN+YVKNL+E+TT++DLK IF
Sbjct: 172 AQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFE 231
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E G ITS VMRDADGKSKCFGFVNF++ DDAA++VEALNGKKFDDKEWYVGKAQKK ER
Sbjct: 232 EHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSER 291
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELKG+FEQSL E+ +K++ +NLY+KNLDDS++D+KLKELFS+FGTITSCKVM DP+GI
Sbjct: 292 ELELKGRFEQSL-ESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGI 350
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST EEAS+AL E+NGKMVVSKPLYVA AQRKEERRARLQAQFSQMR
Sbjct: 351 SRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMRPVAMA 410
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYSF 453
P V PRM MYPP APGLGQQ YGQGPP + PQ + +
Sbjct: 411 PSVAPRMQMYPPGAPGLGQQFLYGQGPPAMIPQAGFGY 448
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/454 (77%), Positives = 396/454 (87%), Gaps = 10/454 (2%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QVQ Q+ A AA P P NG A G G ++ TSLYVGDLDL+V DSQLYD+F
Sbjct: 1 MAQIQVQHQS--AAAAAPIPGANGAAAAAGSGSV-PYMPTSLYVGDLDLNVTDSQLYDVF 57
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVNY + +A RALD LNFTP N KPIRIMYS+RDP
Sbjct: 58 NQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDILNFTPFNNKPIRIMYSHRDP 117
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSG GNIFIKNLDK+ID+KALHDTFS+FGNILSCKVATDS GQSRGYGFVQFDNEE+
Sbjct: 118 SIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEA 177
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGMLLNDKQV+VG FLRK ER+S ++K +FNNVYVKNLSE+TTE+DLK IFG
Sbjct: 178 AQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNK-KFNNVYVKNLSESTTEEDLKNIFG 236
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS +MRDADGKSKCFGFVNF++ D AA++VE+LNGKK DDKEWYVGKAQKK ER
Sbjct: 237 EYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSER 296
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELK +FEQS+KE DK++G+NLY+KNLDDSISD+ LKELFS+FG ITSCKVMRDP+GI
Sbjct: 297 ELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGI 356
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST EEAS+AL EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR
Sbjct: 357 SRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMA 416
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQ 448
P VGPRMP+Y P APG+GQQ YGQGPP +IPPQ
Sbjct: 417 PSVGPRMPIYSPGAPGMGQQFLYGQGPPTMIPPQ 450
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/460 (72%), Positives = 394/460 (85%), Gaps = 15/460 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QVQ Q P V P+P +NG+ N A QFV+TSLYVGDL+++VNDSQLYDLF
Sbjct: 1 MAQIQVQHQTPAPV---PAP-SNGVVPNV----ANQFVTTSLYVGDLEVNVNDSQLYDLF 52
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL+TRRSLGYGYVN+ +A RALD LNFTP+N K IR+MYS+RDP
Sbjct: 53 NQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDP 112
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+ RKSG NIFIKNLDK+ID+KALHDTFS+FG I+SCK+ATD GQS+GYGFVQF+ E+S
Sbjct: 113 SSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDS 172
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQVFVG FLRKQ+R++ KT+FNNVYVKNLSE+ TEDDLK FG
Sbjct: 173 AQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFG 232
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+G ITS +MRDADG+SKCFGFVNF++ +DAA++VEALNGKK DDKEWYVGKAQKK ER
Sbjct: 233 AYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSER 292
Query: 301 EMELKGKFEQSLKET-ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
E ELKG+FEQ++KE+ DKF+GLNLY+KNLDDSI+D+KLKE+FSEFGTITS K+MRDPNG
Sbjct: 293 EQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNG 352
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR---- 415
+SRGSGFVAFST EEAS+AL EMNGKM+VSKPLYVA+AQRKE+RRARLQAQFSQMR
Sbjct: 353 VSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAI 412
Query: 416 -PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P V PRMP+YPP PGLGQQ YGQGPP ++PPQ + +
Sbjct: 413 TPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGY 452
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/426 (76%), Positives = 375/426 (88%), Gaps = 6/426 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A QFV TSLYVGDLD +V DSQLYD+FNQ+GQVVSVRVCRDLSTRRSLGYGYVNY+ +
Sbjct: 6 AIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQD 65
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD LNFTPLN KPIRIMYS+RDP+IRKSG NIFIKNLDK ID+KALHDTFS+FGN
Sbjct: 66 AARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGN 125
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVATD+ GQS+GYGFVQFD+EE+A++AIDKLNGML+NDKQV+VG FLRKQ+R+
Sbjct: 126 ILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGAL 185
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+FNNV+VKNL+E+TT+++LK IF E G ITS VMRDADGKSKCFGFVNF+ DDAA
Sbjct: 186 YSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAA 245
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++VEALNGKK D +EWYVGKAQKK ERE+ELKG+FEQS+KET DKF+GLNLY+KNLDDSI
Sbjct: 246 KAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSI 305
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+D+KLKELFS+FG ITSCKVMRDP+GISRGSGFVAFST EEAS+AL EMNGKM++SKPLY
Sbjct: 306 NDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLY 365
Query: 394 VALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPP 447
VALAQRKEERRARLQAQFSQMR P V RMPMYPP APG+GQQ YGQGPP ++PP
Sbjct: 366 VALAQRKEERRARLQAQFSQMRPVTMAPSVASRMPMYPPGAPGMGQQFLYGQGPPAMMPP 425
Query: 448 QVIYSF 453
Q + +
Sbjct: 426 QAGFGY 431
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/459 (72%), Positives = 398/459 (86%), Gaps = 13/459 (2%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQ+QVQ Q+PV+ +P NG+AN + QFV+TSLYVGDL+ +VND+QLYDLF
Sbjct: 1 MAQIQVQHQSPVS-----APPPNGVAN--APNNPNQFVTTSLYVGDLEQNVNDAQLYDLF 53
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+ QVVSVRVCRDL+TRRSLGYGYVN++ +A RALD LNFTPLN +PIRIMYS+RDP
Sbjct: 54 NQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDP 113
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG NIFIKNLDK+ID+KALHDTFS+FG ILSCK+ATD+ G S+GYGFVQFD+EES
Sbjct: 114 SLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEES 173
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AIDKLNGML+NDKQV+VG FLRKQ+RE+ KT+FNNVYVKNLSE+TT+++L K FG
Sbjct: 174 AQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFG 233
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS +MRDADGKS+CFGFVNF++PDDAA++VE LNGKK DDKEWYVGKAQKK ER
Sbjct: 234 EYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSER 293
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELKG+FEQS+KE+ADK++G+NLY+KNLDD+ISD+KLKE+F+E+GTITSCKVMRDP GI
Sbjct: 294 EQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGI 353
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
RGSGFVAFST EEAS+AL EMNGKM+ KPLYVALAQRKE+RRARLQAQFSQMR
Sbjct: 354 GRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAIT 413
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P V PRMP+YPP APGLGQQ YGQGPP ++PPQ + +
Sbjct: 414 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGY 452
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/424 (76%), Positives = 378/424 (89%), Gaps = 6/424 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QF +TSLYVGDLD SV DSQLYDLFNQ+GQVVSVRVCRDLST RSLGYGYVNY+ +AT
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RA+D LNFTPLN K IR+ S RDPT RKSGAGNIFIKNLDKSID KALH+TFS+FG I+
Sbjct: 96 RAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTII 155
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+ATD+ GQS+GYGFVQ+D+EE+A++AIDKLNGML+NDKQV+VG FLRKQ+R+S K
Sbjct: 156 SCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSK 215
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
T+FNN+YVKNLS++T+EDDL+K FGE+G ITS VMRDADGKSKCFGFVNF++P+DAA++
Sbjct: 216 TKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKA 275
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ALNGKKFDDKEWYVGKAQKK ERE+ELK +FEQ++KE DK++G+NLYVKNLDD+I D
Sbjct: 276 VDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDD 335
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KLKELFSE+GTITSCKVMRDP+GISRGSGFVAFST EEAS+AL EMNGKM+VSKPLYVA
Sbjct: 336 EKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 395
Query: 396 LAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQV 449
LAQRKEERRARLQAQFSQMR P +GPRMPMY P APG+GQQLFYGQ PP +I PQ
Sbjct: 396 LAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQA 455
Query: 450 IYSF 453
+ +
Sbjct: 456 GFGY 459
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/433 (75%), Positives = 382/433 (88%), Gaps = 9/433 (2%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N GGV + QFV TSLYVGDLD++V DSQLYDLFNQ+GQVVSVRVCRDL+++RSLGYGYV
Sbjct: 17 NAGGVNN--QFV-TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYV 73
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
NY +A RAL+ LNFTPL+GKPIRIMYS RDPTIR+SG GNIFIKNLDK+ID+KALHD
Sbjct: 74 NYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHD 133
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
TFS FGNILSCKVA DS GQS+GYGFVQ+D++E+A+ AI+KLNGMLLNDKQV+VGPF+RK
Sbjct: 134 TFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRK 193
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
QER+ DKTRF NV+VKNLSE+T E++L+KIFGEFG ITS AVM+D DGKS+CFGFVNF
Sbjct: 194 QERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNF 253
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ +DAAR+VEALNG K D+K+W+VG+AQKK EREMELK +FEQS +E DK +GLNLY+
Sbjct: 254 ENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYL 313
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDDSISDDKLKELFS +GTITSCKVMRDP+G+S+GSGFVAFST EEAS+AL+EMNGKM
Sbjct: 314 KNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKM 373
Query: 387 VVSKPLYVALAQRKEERRARLQAQFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQG 441
VVSKPLYVALAQRKEERRARLQAQFSQMRP V PRMPMYPP PGLGQQ+FYGQ
Sbjct: 374 VVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQP 433
Query: 442 PP-IIPPQVIYSF 453
PP ++PPQ + +
Sbjct: 434 PPAMLPPQAGFGY 446
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/443 (76%), Positives = 379/443 (85%), Gaps = 16/443 (3%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFN 61
AQVQVQPQ P + A QFV+TSLYVGDL+L+VNDSQLYDLF+
Sbjct: 3 AQVQVQPQGPGPAPNGAAGAG-----------GNQFVTTSLYVGDLELNVNDSQLYDLFS 51
Query: 62 QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
QMG VVSVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLNGKPIRIMYS+RDP+
Sbjct: 52 QMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPS 111
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
IRKSG GNIFIKNLDK ID+KALHDTFS FGNILSCKVATD+ G S+G+GFVQFD+EE+A
Sbjct: 112 IRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAA 171
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
+ AIDKLNGMLLNDKQVFVGPF+RKQEREST +K +FNNV+VKN+SE TE+DL +IFGE
Sbjct: 172 QKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGE 231
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
FG ITS VMRD DGKSKCFGFVNF++ DDAA SVEALNG+KFDDKEWYVGKAQKK ERE
Sbjct: 232 FGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSERE 291
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
+ELK +FEQ++KE DKF+G NLY+KNLDDSI DDKLKELF++FGTITSCKVMRDPNG+S
Sbjct: 292 IELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLS 351
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-----P 416
RGSGFVAFS+ EEAS+AL EMN KMVVSKPLYVALAQRKE+RRARLQAQFSQMR P
Sbjct: 352 RGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPP 411
Query: 417 PVGPRMPMYPPVAPGLGQQLFYG 439
V PR+PMYPP PGLGQQ+FYG
Sbjct: 412 SVVPRLPMYPPSGPGLGQQMFYG 434
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/433 (75%), Positives = 379/433 (87%), Gaps = 9/433 (2%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N GGV + QFV TSLYVGDLD++V DSQLYDLFNQ+GQVVSVRVCRDL+++RSLGYGYV
Sbjct: 17 NAGGVNN--QFV-TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYV 73
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
NY +A RAL+ LNFTPL+GKPIRIMYS RDPTIR+SG GNIFIKNLDK+ID+KALHD
Sbjct: 74 NYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHD 133
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
TFS FGNILSCKVA DS GQS+GYGFVQ+D+EE+A+ AI+KLNGMLLNDKQV+VGPF+RK
Sbjct: 134 TFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRK 193
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
ER+ DKTRF NV+VKNLSE+T E++L+KIFGEFG ITS AVM+D DGKS+CFGFVNF
Sbjct: 194 HERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNF 253
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ +DAAR+VEALNG K D+K+W+VG+AQKK EREMELK +FEQS KE DK +GLNLY+
Sbjct: 254 ENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYI 313
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDDSISD+KLKELFS +GTITSCKVMRDP+G+S+GSGFVAFS EEAS+AL+EMNGKM
Sbjct: 314 KNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKM 373
Query: 387 VVSKPLYVALAQRKEERRARLQAQFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQ- 440
VVSKPLYVALAQRKEERRARLQAQFSQMRP V PRMPMYPP PGLGQQ+FYGQ
Sbjct: 374 VVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQP 433
Query: 441 GPPIIPPQVIYSF 453
P ++PPQ + +
Sbjct: 434 QPAMLPPQAGFGY 446
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/461 (69%), Positives = 387/461 (83%), Gaps = 14/461 (3%)
Query: 1 MAQVQVQPQAP--VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQ+Q Q P A +PAT+G A A QF +TSLYVGDLD +V DSQL+D
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGAT------ATQFGNTSLYVGDLDFNVTDSQLFD 54
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
F QMG VV+VRVCRDL TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+R
Sbjct: 55 AFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++R+SGAGNIFIKNLD+SID+KALHDTFS+FGNI+SCKVA DS GQS+GYGFVQ+ NE
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
ESA+ AI+KLNGMLLNDKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGE+G ITS VM+D +GKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK
Sbjct: 235 FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL+ ++EQ+LKE ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TS KVMRDPN
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----- 413
G S+GSGFVAF+T EEA++A+++++GKM+ SKPLYVA+AQRKE+RR RLQAQFSQ
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVA 414
Query: 414 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
M+P VGPRMP+YPP PG+GQQ+FYGQ PP +IPPQ Y +
Sbjct: 415 MQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGY 455
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/422 (76%), Positives = 368/422 (87%), Gaps = 6/422 (1%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 82
+G + +G +R F S SLYVGDLDL+V DSQL+DLF+Q+ QVVS+RVCRD +T RSLG
Sbjct: 153 SGTNDEPNIGPSR-FASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLG 211
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK 142
YGYVNY +A RALD LNFTPLNGKPIRIMYS+RDP+IRKSG GNIFIKNLDK ID+K
Sbjct: 212 YGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHK 271
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
ALHDTFS FGNILSCKVATD+ G S+G+GFVQFD+EE+A+ AIDKLNGMLLNDKQVFVGP
Sbjct: 272 ALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGP 331
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
F+RKQEREST +K +FNNV+VKN+SE TE+DL +IFGEFG ITS VMRD DGKSKCFG
Sbjct: 332 FVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFG 391
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FVNF++ DDAA SVEALNG+KFDDKEWYVGKAQKK ERE+ELK +FEQ++KE DKF+G
Sbjct: 392 FVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGA 451
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NLY+KNLDDSI DDKLKELF++FGTITSCKVMRDPNG+SRGSGFVAFS+ EEAS+AL EM
Sbjct: 452 NLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEM 511
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLF 437
N KMVVSKPLYVALAQRKE+RRARLQAQFSQMR P V PR+PMYPP PGLGQQ+F
Sbjct: 512 NSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMF 571
Query: 438 YG 439
YG
Sbjct: 572 YG 573
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 238/464 (51%), Gaps = 79/464 (17%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFN 61
AQVQVQPQ P + A QFV+TSLYVGDL+L+VNDSQLYDLF+
Sbjct: 3 AQVQVQPQGPGPAPNGAAGAG-----------GNQFVTTSLYVGDLELNVNDSQLYDLFS 51
Query: 62 QMGQVVSVRVCRDLSTRRSLGYGYVNYNAA------------------------------ 91
QMG VVSVRVCRDLSTRRSLGYGYVNY+
Sbjct: 52 QMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKETIYEGFCVFCLIPSNYAIFFVLG 111
Query: 92 ----HEATRALD--------ELNFTPLNGKPIRIM-------YSYRDPTIRKS--GAGNI 130
H+ R + ELNF + G+ + + +P I S + ++
Sbjct: 112 FSYIHKKRRGKERGGELQKRELNFLRVGGEMAEVQDHEGLLSGTNDEPNIGPSRFASASL 171
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLN 189
++ +LD ++ + LHD FS ++S +V DS +S GYG+V + + E A A+D LN
Sbjct: 172 YVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDVLN 231
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LN K + + R+ + K+ N+++KNL + L F FG I S
Sbjct: 232 FTPLNGKPIRI----MYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCK 287
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V DA G SK GFV FD + A ++++ LNG +DK+ +VG +K ERE
Sbjct: 288 VATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERE-------- 339
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T +K + N++VKN+ + ++++ L +F EFG ITS VMRD +G S+ GFV F
Sbjct: 340 ----STINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNF 395
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
++A+ ++ +NG+ K YV AQ+K ER L+++F Q
Sbjct: 396 ENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQ 439
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/461 (69%), Positives = 387/461 (83%), Gaps = 18/461 (3%)
Query: 1 MAQVQVQPQAP--VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQ+Q Q P VA +P T+G A G G +TSLYVGDLD++V DSQL+D
Sbjct: 1 MAQVQLQGQTPNGSTVAVTSAPVTSGGATAAGFG------TTSLYVGDLDVNVTDSQLFD 54
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
F+QMG VVSVRVCRDL+TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+R
Sbjct: 55 AFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++R+SGAGNIFIKNLD+SID+KALHDTFS FGNI+SCKVA DS GQS+GYGFVQ+ NE
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
ESA+ AI+KLNGMLLNDKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGE+G ITS VM+D DGKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK
Sbjct: 235 FGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL+ ++EQ+LKE ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TSCKVMRDPN
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----- 413
G S+GSGFVAFST EEA++A+++++GKM+ SKPLYVA+AQRKE+RR AQFSQ
Sbjct: 355 GTSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR----AQFSQVRPVA 410
Query: 414 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
M+P VGPRMP+YPP PG+GQQ+FYGQGPP +IPPQ + +
Sbjct: 411 MQPSVGPRMPVYPPGGPGIGQQMFYGQGPPTMIPPQPGFGY 451
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/445 (70%), Positives = 378/445 (84%), Gaps = 12/445 (2%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
A +PAT+G A A QF +TSLYVGDLD +V DSQL+D F QMG VV+VRVCRD
Sbjct: 1 AVTSAPATSGGAT------ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRD 54
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
L TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+RDP++R+SGAGNIFIKN
Sbjct: 55 LVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKN 114
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD+SID+KALHDTFS+FGNI+SCKVA DS GQS+GYGFVQ+ NEESA+ AI+KLNGMLLN
Sbjct: 115 LDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLN 174
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
DKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK FGE+G ITS VM+D
Sbjct: 175 DKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG 234
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKE 314
+GKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK ERE EL+ ++EQ+LKE
Sbjct: 235 EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE 294
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TS KVMRDPNG S+GSGFVAF+T EE
Sbjct: 295 AADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEE 354
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ-----MRPPVGPRMPMYPPVA 429
A++A+++++GKM+ SKPLYVA+AQRKE+RR RLQAQFSQ M+P VGPRMP+YPP
Sbjct: 355 ATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGG 414
Query: 430 PGLGQQLFYGQGPP-IIPPQVIYSF 453
PG+GQQ+FYGQ PP +IPPQ Y +
Sbjct: 415 PGIGQQMFYGQAPPAMIPPQPGYGY 439
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/412 (73%), Positives = 366/412 (88%), Gaps = 5/412 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F Q+G VVSVRVCRD++TRRSLGY YVNY++ +A R
Sbjct: 37 FPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAAR 96
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP++RKSG NIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 97 ALEMLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 156
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD+ G+S+GYGFVQ++ +E+A++AIDKLNGML+NDK+V+VGPF+RKQER+++ +
Sbjct: 157 CKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQV 216
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNLSE TTEDDLK+IFG+FG ITS VMR+ DG+SKCFGFVNF+ PDDAA++V
Sbjct: 217 KFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGKKFDDKEWYVG+AQKK EREMELK KFE++L+E ADK++ NLY+KNLDDS+ DD
Sbjct: 277 QELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDD 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+E+GTITSCKVMRD NG+SRGSGFVAF +AE+AS+AL EMN KMV SKPLYVAL
Sbjct: 337 KLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVAL 396
Query: 397 AQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP 443
AQRKE+R+ARLQAQFSQ+R P VGPRMPM+PP PG+GQQLFYGQ PP
Sbjct: 397 AQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPP 448
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/424 (73%), Positives = 369/424 (87%), Gaps = 7/424 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A R
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVAT+ G+S+GYGFVQF+ EE+A++AI KLNGMLLNDK+V+VGPF+RKQERE+ +
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNP 215
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNLSE+TTED+LK+IFG+FG ITS VMR+ DGKS+CFGFVNF++PDDAAR+V
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGKKFDDKEWYV +AQKK EREMELK KFE+++KE ADK +G NLY+KNLDDSI DD
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 337 -KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KLKE+F++FGTITSCKVMRD NG+S+GSGFVAF +AE+AS+AL MNGKM+ SKPLYVA
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 396 LAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQV 449
LAQRKEERRARLQAQFSQMR P V PRMPMYPP PG+GQQLFYGQ PP + PQ
Sbjct: 396 LAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQP 455
Query: 450 IYSF 453
+ F
Sbjct: 456 GFGF 459
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/421 (71%), Positives = 362/421 (85%), Gaps = 6/421 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDLD +V DSQL++ F+Q GQVVSVRVCRD++TRRSLGYGYVNY +A+RAL
Sbjct: 38 TTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 97
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELNF LNG+ IR+MYS RDP++RKSG GNIFIKNLDKSID+KALH+TFS FG ILSCK
Sbjct: 98 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 157
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D GQS+GYGFVQ+D +E+A+ AIDKLNGMLLNDKQV+VGPF+ K +R+ + +K +F
Sbjct: 158 VAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKF 217
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKNLSE+ ++++L K+FGEFG+ TS +MRD +GKSK FGFVNF++ DDAAR+V+A
Sbjct: 218 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 277
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGK FDDKEW+VGKAQKK ERE ELK KFEQSLKE ADK +G NLYVKNLD+S++DDKL
Sbjct: 278 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 337
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+E F+ FGTITSCKVMRDP G+SRGSGFVAFST EEAS+A+TEMNGKM+V+KPLYVALAQ
Sbjct: 338 REHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQ 397
Query: 399 RKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYS 452
RKE+R+ARLQAQFSQMR P VGPRM MYPP P +GQQLFYGQGPP +IPPQ +
Sbjct: 398 RKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPPQPGFG 457
Query: 453 F 453
+
Sbjct: 458 Y 458
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/421 (73%), Positives = 371/421 (88%), Gaps = 5/421 (1%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G A QF +TSLYVGDLD +V DSQL+D F+QMGQVVSVRVCRDL+TRRSLGYGYVN+
Sbjct: 30 GAAAAAQFGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFT 89
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+ +A RA+ ELN+ PLNGKP+R+MYS+RDP++R+SGAGNIFIKNLDKSID+KALHDTFS
Sbjct: 90 SPQDAARAIQELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFS 149
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNI+SCKVA DS GQS+GYGFVQ++ EESA+ A+ +LNGMLLNDKQV+VGPFLR+QER
Sbjct: 150 VFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQER 209
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+ST +KT F NVYVKNL+E+TT+DDLK IFGEFG ITS VM+D +GK K FGFVNF++
Sbjct: 210 DSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENA 269
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
DDAA++VE+LNGK FDDKEW+VG+AQKK EREMELK ++EQSLKE ADKF+ NLYVKNL
Sbjct: 270 DDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNL 329
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DDS+SD+KLKELF+ +GT+TSCKVMRDPNG+SRGSGFVAFST EEA+KA++EM+GKM+ +
Sbjct: 330 DDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIEN 389
Query: 390 KPLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPPI 444
KPLYVA+AQRKE+RRARLQAQFSQMR PPVGPRMP+YPP PG+GQ +FYGQ PP
Sbjct: 390 KPLYVAVAQRKEDRRARLQAQFSQMRPVAMPPPVGPRMPIYPPGGPGIGQPMFYGQAPPT 449
Query: 445 I 445
+
Sbjct: 450 M 450
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/420 (74%), Positives = 368/420 (87%), Gaps = 7/420 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A R
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVAT+ G+S+GYGFVQF+ EE+A++AI KLNGMLLNDK+V+VGPF+RKQERE+ +
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNP 215
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNLSE+TTED+LK+IFG+FG ITS VMR+ DGKS+CFGFVNF++PDDAAR+V
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGKKFDDKEWYV +AQKK EREMELK KFE+++KE ADK +G NLY+KNLDDSI DD
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 337 -KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KLKE+F++FGTITSCKVMRD NG+S+GSGFVAF +AE+AS+AL MNGKM+ SKPLYVA
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 396 LAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQV 449
LAQRKEERRARLQAQFSQMR P V PRMPMYPP PG+GQQLFYGQ PP + PQ+
Sbjct: 396 LAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVNPQL 455
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/423 (71%), Positives = 366/423 (86%), Gaps = 6/423 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F Q+G VVSVRVCRD++TR+SLGY YVNYN +A R
Sbjct: 31 FPATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAAR 90
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NG+PIRIMYS RDP++RKSG NIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 91 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 150
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD+ G+S+GYGFVQ++ +E+A +AI+KLNGML+NDK+V+VGPF+RKQER+++
Sbjct: 151 CKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNV 210
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNV+VKNLSETTTEDDL++IFG+FG ITS VMR+ DG+SKCFGFVNF+ PD+AA +V
Sbjct: 211 KFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAV 270
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGKKFDDKEWYVG+AQKK EREMELK KFE++L+ETADK++ NLY+KNLDD++ D+
Sbjct: 271 QDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDE 330
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+EFG ITSCKVMRD NG SRGSGFVAF +AE+AS+AL EMN KMV SKPLYVAL
Sbjct: 331 KLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVAL 390
Query: 397 AQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVI 450
AQRKE+R+ARLQAQFSQ+R P VGPRM M+PP PG+GQQLFYGQ PP I PQ
Sbjct: 391 AQRKEDRKARLQAQFSQLRPVPMAPTVGPRMAMFPPGVPGVGQQLFYGQPPPAFINPQPG 450
Query: 451 YSF 453
+ F
Sbjct: 451 FGF 453
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/420 (71%), Positives = 360/420 (85%), Gaps = 5/420 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDLD +V DSQL++ F Q GQVVSVRVCRD++TRRSLGYGYVNY +A+RAL
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELNF LNG+ IR+MYS RDP++RKSG GNIFIKNLDKSID+KALH+TFS FG ILSCK
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D GQS+GYGFVQ+D +E+A+ AIDKLNGMLLNDKQV+VGPF+ K +R+ + +K +F
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKF 223
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKNLSE+ ++++L K+FGEFG+ TS +MRD +GKSK FGFVNF++ DDAAR+V+A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGK FDDKEW+VGKAQKK ERE ELK KFEQSLKE ADK +G NLYVKNLD+S++DDKL
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+E F+ FGTITSCKVMRDP+G+SRGSGFVAFST EEA++A+TEMNGKM+V+KPLYVALAQ
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Query: 399 RKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYSF 453
RKE+R+ARLQAQFSQMR P VGPRM MYPP P +GQQLFYGQGPP + PQ + +
Sbjct: 404 RKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPQPGFGY 463
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/422 (71%), Positives = 354/422 (83%), Gaps = 5/422 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VND QLYDLFNQ+ QVVSVR+CRD++T++SLGYGYVN++ AH+A +
Sbjct: 21 LTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAK 80
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D LNFTPLNGK IRIMYS RDP+ RKSGA N+FIKNLDK+ID+KAL+DTFS FGNILS
Sbjct: 81 AIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILS 140
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD+ GQS+G+GFVQF++EESA++AIDKLNGML+NDKQVFVGPFLRKQ+RES T
Sbjct: 141 CKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGT 200
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNV+VKNL ++ TE DL++IFGE+G ITS VMRD DGKSK FGFVNF + DDAA++V
Sbjct: 201 KFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAV 260
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALNGK FD KEWYVGKAQKK ERE+ELKG+ EQ KET DK+ G NLY+KNLDDS+ D+
Sbjct: 261 EALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDE 320
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L ELFSEFGTITSCKVMRDPNGISRGSGFV+FS AE A++AL EMNGKMV KPLYVAL
Sbjct: 321 ELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVAL 380
Query: 397 AQRKEERRARLQAQFSQMRPP-----VGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIY 451
AQRKE+RRARLQAQFSQ RP V PRMP+YP AP +GQQ YGQ P PQ +
Sbjct: 381 AQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATIPQAAF 440
Query: 452 SF 453
+
Sbjct: 441 GY 442
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 161/294 (54%), Gaps = 17/294 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ + ++++ +LD +++ LYD F+ G ++S +V D S +S G+G+V + +
Sbjct: 106 ARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASG-QSKGHGFVQFESEES 164
Query: 94 ATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
A A+D+LN +N K + + R+ + + N+F+KNL S+ L F
Sbjct: 165 AQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFG 224
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+G I S V D G+S+G+GFV F N + A A++ LNG + K+ +VG +K ER
Sbjct: 225 EYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSER 284
Query: 210 E------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
E T DK N+Y+KNL ++ +++L ++F EFG ITS VMRD +G
Sbjct: 285 ELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGI 344
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
S+ GFV+F + A R++ +NGK K YV AQ+K +R L+ +F QS
Sbjct: 345 SRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQS 398
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/445 (70%), Positives = 362/445 (81%), Gaps = 8/445 (1%)
Query: 14 VAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
+A P TN A +G + SLYVGDLD VND QLYDLFNQ+ QVVSVR+CR
Sbjct: 1 MAHIPQTPTNDAAASGA---NPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICR 57
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D++T++SLGYGYVN++ A +A +A+D LNFTPLNGK IRIMYS RDP+ RKSGA N+FIK
Sbjct: 58 DVATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIK 117
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLDK+ID+KAL DTFS FGNILSCK+ATD+ GQS+G+GFVQF++EESA++AIDKLNGML+
Sbjct: 118 NLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLI 177
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
NDKQV+VGPF RKQ+RES T+FNNVYVKNL E TTE DLK IFGE+G ITS VMRD
Sbjct: 178 NDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRD 237
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
DGKSK FGFVNF + +DAA++VEALNGK FD KEWYVGKAQKK ERE+ELK + EQS K
Sbjct: 238 VDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTK 297
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
ET DK+ G NLY+KNLDDS+ D++L+ELFSEFGTITSCKVMRDP+GISRGSGFVAFS AE
Sbjct: 298 ETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAE 357
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPV 428
AS AL EMNGKMV KPLYVALAQRKE+RRARLQAQFSQ R P V PRMP+YP
Sbjct: 358 GASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAITPNVSPRMPLYPLG 417
Query: 429 APGLGQQLFYGQGPPIIPPQVIYSF 453
APG+GQQL YGQ P + PQ + +
Sbjct: 418 APGIGQQLLYGQAAPSMIPQAAFGY 442
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 309/451 (68%), Positives = 373/451 (82%), Gaps = 14/451 (3%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
+P AV A SP G+ G+G A+ +TSLYVGDL+ SV+DSQLY+LF+Q GQVVSV
Sbjct: 14 SPGAVPAVVSPGAVGV----GLGVAQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSV 69
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD+++RRSLGY YVN+N +A RAL+ LNF PLN KPIR+MYS RDP+ R+SG+ N
Sbjct: 70 RVCRDVTSRRSLGYAYVNFNNPLDAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSAN 129
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDK IDNK+LH+TFS+FG ILSCKVA D GQS+G+GFVQ++ EE+A++AI LN
Sbjct: 130 IFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLN 189
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML+NDK VFVGPFLRKQER+ + DKT+FNNV+VKNLSE+TT++DL KIFGE+G ITS
Sbjct: 190 GMLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAV 249
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VM DGKS+CFGF+NF++PD A+R+V+ LNGKK +DKEWYVG+AQKK EREMELK +FE
Sbjct: 250 VMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFE 309
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
Q LK+ ADK++GLNLY+KNLDDSI DD+L+ELFS FG ITSCKVMRD NG+S+GSGFVAF
Sbjct: 310 QILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAF 369
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV------GPRMP 423
ST EEAS+ALTEMNGKM+ KPLYVA AQRKE+R+A LQAQFSQMRP V PR+P
Sbjct: 370 STREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLP 429
Query: 424 MYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
MYPP+AP QQLFYGQ PP +IPPQ + F
Sbjct: 430 MYPPMAP---QQLFYGQAPPAMIPPQPGFGF 457
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/422 (70%), Positives = 361/422 (85%), Gaps = 6/422 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 122 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 181
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NG+PIRIMYS RDP++RKSG NIFIKNLDKSIDNKALHDTF FGNILS
Sbjct: 182 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILS 241
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+GYGFVQ++ +E+A +AI+KLNGML+NDK+V+VGPF+RKQER+++
Sbjct: 242 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV 301
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNL+ETTTEDDLK+IFG+FG ITS VMRD DG+SKCFGFVNF+ PD+AA +V
Sbjct: 302 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 361
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGKKF DKEWYVG+AQKK EREMELK KFE++L+E ADK++ NLY+KNLDD++ D+
Sbjct: 362 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 421
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+EFGTITSCKVMRD NG SRGSGFVAF +A++AS+AL EMN KMV +KPLYVAL
Sbjct: 422 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 481
Query: 397 AQRKEERRARLQAQFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIY 451
AQRKE+R+ARLQAQFSQMRP VGPRM M PP P +GQQ+FYGQ P I PQ +
Sbjct: 482 AQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQPPAFINPQPGF 540
Query: 452 SF 453
F
Sbjct: 541 GF 542
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/419 (71%), Positives = 359/419 (85%), Gaps = 7/419 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ SV DSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVN+N +A RAL+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF PLNGKPIR+MYS RDP+ R+SG+ NIFIKNLDK+ID+K LHDTFS FGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD +GQS+G+GFVQ+D E+A+SAI LNGML+NDK V+VGPFLRKQERE++ DKT+FNN
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNLSE+TT++DL KIFG +G ITS +M DGKS+CFGF+NF PDDAAR+VE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GKK +DKEWYVG+AQKK ERE+ELK +FEQS+K+ ADK++GLNLY+KNLDDSI DD+L E
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LFS +G ITSCK+MRD NG+S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 401 EERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
E+R+A LQAQFSQ+R P + PR+PMYPP+AP LGQQLFYGQ PP I+PPQ + F
Sbjct: 400 EDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAP-LGQQLFYGQAPPAIMPPQPGFGF 457
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 302/422 (71%), Positives = 358/422 (84%), Gaps = 4/422 (0%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q +TSLYVGDLD V DSQLYDLFNQ+GQVVSVR+CRDL++++SLGYGYVN++ H+A
Sbjct: 20 QLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAA 79
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+A+D LNFTPLN KPIRIMYS+RDP++RKSGA NIFIKNLD++ID+KAL+DTFS FGNIL
Sbjct: 80 KAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNIL 139
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+A D+ G S+GYGFVQF+NEESA+SAIDKLNGMLLNDK V+VG F RKQ+R++
Sbjct: 140 SCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSN 199
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+FNNVYVKNLSE+ T+DDLK FGE+G ITS VMRD DGKSKCFGFVNF++ D AA +
Sbjct: 200 AKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEA 259
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALNGKKFDDKEWYVGKA KKYERE+ELK + EQS+KET DKF G NLY+KNLDDS++D
Sbjct: 260 VEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTD 319
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KL ELFSEFGT+TSCK++RDP GISRGSGFVAFST EEA++AL EMNGKMV KPLYVA
Sbjct: 320 EKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 396 LAQRKEERRARLQAQFSQMRP----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIY 451
AQ+KEER+ARLQAQFSQ+RP P+ PR+P YP PG+GQQ+ YGQ PP Q +
Sbjct: 380 PAQKKEERKARLQAQFSQVRPVTMAPIAPRLPFYPAGVPGMGQQIMYGQAPPAFISQAGF 439
Query: 452 SF 453
+
Sbjct: 440 GY 441
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 17/292 (5%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD +++ LYD F+ G ++S ++ D S S GYG+V + A
Sbjct: 107 RKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASG-LSKGYGFVQFENEESA 165
Query: 95 TRALDELNFTPLNGKPIRIMY----SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A+D+LN LN KP+ + + RD + + N+++KNL +S+ + L +TF
Sbjct: 166 QSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGE 225
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
+G I S V D G+S+ +GFV F+N ++A A++ LNG +DK+ +VG L+K ERE
Sbjct: 226 YGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERE 285
Query: 211 ------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
T DK N+Y+KNL ++ T++ L ++F EFG +TS ++RD G S
Sbjct: 286 LELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGIS 345
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ GFV F P++A R++ +NGK K YV AQKK ER+ L+ +F Q
Sbjct: 346 RGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQ 397
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/419 (71%), Positives = 358/419 (85%), Gaps = 7/419 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ SV DSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVN+N +A RAL+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF PLNGKPIR+MYS RDP+ R+SG+ NIFIKNLDK+ID+K LHDTFS FGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD +GQS+G+GFVQ+D E+A+SAI LNGML+NDK V+VGPFLRKQERE++ DKT+FNN
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNLSE+TT++DL KIFG +G ITS +M DGKS+CFGF+NF PDDAAR+VE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GKK +DKEWYVG+AQKK ERE+ELK +FEQS+K+ ADK++GLNLY+KNLDDSI DD+L E
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LFS +G ITSCK+MRD NG+S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 401 EERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
E+R+ LQAQFSQ+R P + PR+PMYPP+AP LGQQLFYGQ PP I+PPQ + F
Sbjct: 400 EDRKVMLQAQFSQVRPVPMTPSMAPRLPMYPPMAP-LGQQLFYGQAPPAIMPPQPGFGF 457
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/420 (71%), Positives = 365/420 (86%), Gaps = 6/420 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QFVSTSLYVGDL+ +V+++QLY++F+Q+GQVVS+RVCRDL TRRSLGY YVNYN A +AT
Sbjct: 20 QFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDAT 79
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RAL+ LNFT +NGKPIRIM+S+RDP+IRKSG NIFIKNLDKSIDNKALHDTF+ FGNIL
Sbjct: 80 RALELLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGNIL 139
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVATD+ GQS+GYGFVQF+ EESA++AI+K+NGMLLNDKQVFVGPF+R+QER+
Sbjct: 140 SCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAGGV 199
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
++FNNVYVKNL++ TT+D+LKK+FG +G I+S VMRD DGKSKCFGFVNF+ PDDAA++
Sbjct: 200 SKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKA 259
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEAL GKKFD+KEWYVG+AQKK ERE EL+ KFEQ KE +K++G+NLY+KNLDD++ D
Sbjct: 260 VEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDD 319
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+K++ELF+E+GTITSCKVMRD G S+GSGFVAFS+ +EA++A+TEMNGKMV +KPLYVA
Sbjct: 320 EKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYVA 379
Query: 396 LAQRKEERRARLQAQFSQMRPPVGP----RMPMYPPVAPGLGQQL-FYGQGPP-IIPPQV 449
LAQRKEERR RLQA F+QMR VGP +PMY P APG+G Q+ +YGQ PP IP QV
Sbjct: 380 LAQRKEERRMRLQAAFAQMRTHVGPAVPTSLPMYHPGAPGMGPQMSYYGQHPPGPIPLQV 439
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 297/422 (70%), Positives = 361/422 (85%), Gaps = 6/422 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDLD+SV D+QL+D+F Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 29 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NG+PIRIMYS RDP++RKSG NIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 89 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+GYGFVQ++ +E+A +AI+KLNGML+NDK+V+VGPF+RKQER+++
Sbjct: 149 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNV 208
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNL+ETTTEDDLK+IFG+FG ITS VMRD DG+SKCFGFVNF+ PD+AA +V
Sbjct: 209 KFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 268
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGKKF DKEWYVG+AQKK ERE+ELK KFE++L+E ADK++ NLY+KNLDD++ D+
Sbjct: 269 QDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 328
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+EFGTITSCKVMRD NG SRGSGFVAF +A++AS+AL EMN KMV +KPLYVAL
Sbjct: 329 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 388
Query: 397 AQRKEERRARLQAQFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIY 451
AQRKE+R+ARLQAQFSQMRP VGPRM M PP P +GQQ+FYGQ P I PQ +
Sbjct: 389 AQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQPPAFINPQPGF 447
Query: 452 SF 453
F
Sbjct: 448 GF 449
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 293/414 (70%), Positives = 358/414 (86%), Gaps = 5/414 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
FVSTSLYVGDLD +V+++QLYDLFNQ+GQV+S+RVCRDL TRRSLGY YVNYN +ATR
Sbjct: 1 FVSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATR 60
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGK +RIM+S+RDP+IRKSG NIFIKNLD++IDNKALHDTF +FGNILS
Sbjct: 61 ALELLNFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILS 120
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATDS GQS+GYGFVQF+ EESA+ AIDK+NGML+ +KQVFVGPF+R+QERE
Sbjct: 121 CKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQEREQNG--- 177
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNV+VKNL E+TT+D+LK++FG FG ITS VMRD+DGKSKCFGFVNF++PD+AA++V
Sbjct: 178 KFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAV 237
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGKK +DKEWYVG+AQKK ERE EL+ K+EQ KE D+++G NLY+KNLDD + D+
Sbjct: 238 VGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDE 297
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L+E+F++FG+ITSCKVMRD G S+GSGFVA+S EEA++A EMNGKM+ SKP+YVA+
Sbjct: 298 RLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAM 357
Query: 397 AQRKEERRARLQAQFSQMRPPVG--PRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
AQRKEERRA+LQAQF+QMR PVG MPMY P APGLGQQLFYGQ P ++PPQ
Sbjct: 358 AQRKEERRAKLQAQFAQMRSPVGVATTMPMYHPGAPGLGQQLFYGQPPALMPPQ 411
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 14/289 (4%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD ++++ L+D F G ++S +V D S +S GYG+V + A
Sbjct: 87 RKSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCKVATD-SNGQSKGYGFVQFEQEESA 145
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGN 153
A+D++N + K + + R ++G N+F+KNL +S + L + F FG
Sbjct: 146 QVAIDKVNGMLVAEKQVFVGPFVRRQEREQNGKFNNVFVKNLGESTTDDELKEVFGAFGK 205
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
I S V DS G+S+ +GFV F+N + A A+ LNG + DK+ +VG +K ERE+
Sbjct: 206 ITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAEL 265
Query: 213 -----------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
D+ + N+Y+KNL + ++ L++IF +FG ITS VMRDA G+SK
Sbjct: 266 RAKYEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGS 325
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
GFV + P++A R+ +NGK K YV AQ+K ER +L+ +F Q
Sbjct: 326 GFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRKEERRAKLQAQFAQ 374
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 297/423 (70%), Positives = 367/423 (86%), Gaps = 6/423 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDL SV D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSG GNIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ATD G+SRGYGFVQF+ +ESA+SAIDKLNGML+NDK+VFVGPF+RKQ+RE+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F+NVYVKNLS+T T+D+LK++FG++G ITS VMRD+DGKS+CFGFVNF++ D AA++V
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F+DKE YVG+AQKK EREMELK KFE++++E A+KF+ NLY+KNL+++I D+
Sbjct: 272 QELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDE 331
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+E+G ITSCKVMRD NG+SRGSGFVAF +AE+A++ALTEMNGKMV SKPLYVAL
Sbjct: 332 KLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVAL 391
Query: 397 AQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVI 450
AQRKE+R+A+LQAQFSQMR P VGPRMPM+PP PG+GQQLFYGQ PP I PQ
Sbjct: 392 AQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQAG 451
Query: 451 YSF 453
++F
Sbjct: 452 FAF 454
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/419 (72%), Positives = 361/419 (86%), Gaps = 6/419 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A RAL+
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL+DTFS FGNILSCKVA
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVA 162
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
T+ G+S+GYGFVQ++ +ESA++AI++LNGMLLNDK+V+VGPF+RKQERE+ +FNN
Sbjct: 163 TEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNN 222
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKNLSE+TTED+LK++FG FG ITS V+R DGKS+CFGFVNF++PDDA +VE LN
Sbjct: 223 VYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLN 282
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD-KLK 339
GKKFDDKE YVG+AQKK EREM+LK FE+S KETAD+ +G NLY+KNLD S+ DD KLK
Sbjct: 283 GKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLK 342
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
ELF+EFGTITSCKVMRD NG+++GSGFVAF ++E+A++AL MNGKMV SKPLYVALAQR
Sbjct: 343 ELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQR 402
Query: 400 KEERRARLQAQFSQMR----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
KEERRARLQAQFSQMR PPV PRMPMYPP PG+GQQLFYGQ PP + PQ Y F
Sbjct: 403 KEERRARLQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNPQPGYGF 461
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/422 (71%), Positives = 357/422 (84%), Gaps = 4/422 (0%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q +TSLYVGDLD V DSQLYDLFNQ+GQVVSVR+CRDL++++SLGYGYVN++ H+A
Sbjct: 20 QLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAA 79
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+A+D LNFTPLN KPIRIMYS+RDP++RKSGA NIFIKNLD++ID+KAL+DTFS FGNIL
Sbjct: 80 KAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNIL 139
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+A D+ G S+GYGFVQF+NEESA+SAIDKLNGMLLNDK V+VG F RKQ+R++
Sbjct: 140 SCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSN 199
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+FNNVYVKNLSE+ T+DDLK FGE+G ITS VMRD DGKSKCFGFVNF++ D AA +
Sbjct: 200 AKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEA 259
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALNGKKFDDKEWYVGKA KKYERE+ELK + EQS+KET DKF G NLY+KNLDDS++D
Sbjct: 260 VEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTD 319
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KL ELFSEFGT+TSCK++RDP GISRGSGFVAFST EEA++AL EMNGKMV KPLYVA
Sbjct: 320 EKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 396 LAQRKEERRARLQAQFSQMRP----PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIY 451
AQ+KEER+ARL AQFSQ+RP P+ PR+P YP PG+GQQ+ YGQ PP Q +
Sbjct: 380 PAQKKEERKARLPAQFSQVRPVTMAPIAPRLPFYPAGVPGMGQQIMYGQAPPAFISQAGF 439
Query: 452 SF 453
+
Sbjct: 440 GY 441
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 166/292 (56%), Gaps = 17/292 (5%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD +++ LYD F+ G ++S ++ D S S GYG+V + A
Sbjct: 107 RKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASG-LSKGYGFVQFENEESA 165
Query: 95 TRALDELNFTPLNGKPIRIMY----SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A+D+LN LN KP+ + + RD + + N+++KNL +S+ + L +TF
Sbjct: 166 QSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGE 225
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
+G I S V D G+S+ +GFV F+N ++A A++ LNG +DK+ +VG L+K ERE
Sbjct: 226 YGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERE 285
Query: 211 ------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
T DK N+Y+KNL ++ T++ L ++F EFG +TS ++RD G S
Sbjct: 286 LELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGIS 345
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ GFV F P++A R++ +NGK K YV AQKK ER+ L +F Q
Sbjct: 346 RGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLPAQFSQ 397
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/418 (72%), Positives = 360/418 (86%), Gaps = 6/418 (1%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A RAL+ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
NFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL+DTFS FGNILSCKVAT
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVAT 163
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
+ G+S+GYGFVQ++ +ESA++AI++LNGMLLNDK+V+VGPF+RKQERE+ +FNNV
Sbjct: 164 EMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNV 223
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
YVKNLSE+TTED+LK++FG FG ITS V+R DGKS+CFGFVNF++PDDA +VE LNG
Sbjct: 224 YVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNG 283
Query: 282 KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD-KLKE 340
KKFDDKE YVG+AQKK EREM+LK FE+S KETAD+ +G NLY+KNLD S+ DD KLKE
Sbjct: 284 KKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKE 343
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LF+EFGTITSCKVMRD NG+++GSGFVAF ++E+A++AL MNGKMV SKPLYVALAQRK
Sbjct: 344 LFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRK 403
Query: 401 EERRARLQAQFSQMR----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
EERRARLQAQFSQMR PPV PRMPMYPP PG+GQQLFYGQ PP + PQ Y F
Sbjct: 404 EERRARLQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNPQPGYGF 461
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 313/407 (76%), Positives = 354/407 (86%), Gaps = 15/407 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQVQV AQP NG ANN FV+TSLYVGDL+ +V DSQLYDLF
Sbjct: 1 MAQVQV--------PAQPQ-NVNGGANN------PNFVTTSLYVGDLEANVTDSQLYDLF 45
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVSVRVCRDL++RRSLGYGYVNY+ +A RAL+ LNFTP+NG PIR+MYS+RDP
Sbjct: 46 NQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEVLNFTPVNGSPIRVMYSHRDP 105
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSGAGNIFIKNLDK+ID+KALHDTFS FGNILSCKVATD GQS+GYGFVQFD+EE+
Sbjct: 106 SVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEA 165
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+KLNGMLLNDKQV+VGPFLRKQER++ DKTRFNNV+VKNLSETT E+DL K FG
Sbjct: 166 AQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAFG 225
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRD DGKS+CFGFVNF++ DDAA++ EALNGKKFDDKEW+VGKAQKKYER
Sbjct: 226 EFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYER 285
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E+ELK +FEQS+KE ADKF+G NLY+KNLDDSI D+K+KELFS FGTITSCKVMRDPNGI
Sbjct: 286 EVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGI 345
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
SRGSGFVAFST EEAS+AL EMNGKMV SKPLYVALAQRKE+RRARL
Sbjct: 346 SRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARL 392
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 156/286 (54%), Gaps = 17/286 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L+ ++ + L+D F+ G ++S +V D + +S GYG+V + N + A A++
Sbjct: 26 SLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEV 85
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN +N + V R+ + K+ N+++KNL + L F FG I S
Sbjct: 86 LNFTPVNGSPIRV----MYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILS 141
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G+SK +GFV FD + A +++E LNG +DK+ YVG +K ER+
Sbjct: 142 CKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDT----- 196
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
DK N++VKNL ++ +++ L + F EFGTITS VMRD +G SR GFV
Sbjct: 197 -------ATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFV 249
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
F A++A+KA +NGK K +V AQ+K ER L+ +F Q
Sbjct: 250 NFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 295
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 296/418 (70%), Positives = 364/418 (87%), Gaps = 6/418 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDL SV D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSG GNIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ATD G+SRGYGFVQF+ +ESA+SAIDKLNGML+NDK+VFVGPF+RKQ+RE+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F+NVYVKNLS+T T+D+LK++FG++G ITS VMRD+DGKS+CFGFVNF++ D AA++V
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F+DKE YVG+AQKK EREMELK KFE++++E A+KF+ NLY+KNL+++I D+
Sbjct: 272 QELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDE 331
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+E+G ITSCKVMRD NG+SRGSGFVAF +AE+A++ALTEMNGKMV SKPLYVAL
Sbjct: 332 KLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVAL 391
Query: 397 AQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQ 448
AQRKE+R+A+LQAQFSQMR P VGPRMPM+PP PG+GQQLFYGQ PP I PQ
Sbjct: 392 AQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQ 449
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/430 (70%), Positives = 365/430 (84%), Gaps = 16/430 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QFVSTS+YVGDL+ +V+++QLY++F+Q G VVS+RVCRDL TRRSLGY YVNY++A +AT
Sbjct: 20 QFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDAT 79
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RAL+ LNFTP+NGKPIRIM+S+RDP++RKSGA NIFIKNLDK+IDNKALHDTFS FG IL
Sbjct: 80 RALELLNFTPVNGKPIRIMFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFSAFGGIL 139
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVATDS GQS+GYGFVQF+ EESA+SAI+K+NGMLLNDKQVFVGPF+R+QER+ +
Sbjct: 140 SCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQERDLSGGV 199
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
++FNNVYVKNL E TT+D+LKK+FG +G I+S VMRD +GKSKCFGFVNF+ DDAA++
Sbjct: 200 SKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKA 259
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALNGKK D+KEWYVG+AQKK ERE EL+ KFEQ K +K++G+NLY+KNLDD++ D
Sbjct: 260 VEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAVDD 319
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KL+ELF+E+GTITSCKVM+DP G SRGSGFVAFST EEA++A+TEMN KMV SKPLYVA
Sbjct: 320 EKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYVA 379
Query: 396 LAQRKEERRARLQAQFSQMRPPVGP----RMPMYPPVAPGLGQQL-FYGQGP--PI---- 444
LAQRKEERR RLQA F+QMR PVGP +PMY P PGLG Q+ +YGQ P PI
Sbjct: 380 LAQRKEERRVRLQAAFAQMRTPVGPTVPTSLPMYHP-GPGLGPQMPYYGQHPSGPIPLQP 438
Query: 445 ----IPPQVI 450
PPQ++
Sbjct: 439 AAFGYPPQIM 448
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/429 (69%), Positives = 360/429 (83%), Gaps = 16/429 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
FVSTSLYVGDL+ +V+++QLY+LF Q+GQVVS+RVCRDL TRRSLGY YVNYN+A +ATR
Sbjct: 25 FVSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATR 84
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF+ LNG PIRIM+S+RDP+IRKSG NIFIKNLDK+IDNKALHDTFS FG ILS
Sbjct: 85 ALELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILS 144
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D GQS+GYGFVQF+ EESA +AI+K+NGMLLNDKQVFVGPF+R+QER+ + +
Sbjct: 145 CKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVS 204
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNL E TTEDDLK +FG +G I+S VMRD+DGKSKCFGFVNF+ PD+AA++V
Sbjct: 205 KFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAV 264
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALNGKK D+KEWYVG+AQKK ERE EL+ KFEQ KE +K++G+NLY+KNLDD++ D+
Sbjct: 265 EALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDE 324
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ELF+++GTITSCKVMRDP G SRGSGFVAFS+ EEA++A+TEMNGKMV SKPLYVAL
Sbjct: 325 KLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVAL 384
Query: 397 AQRKEERRARLQAQFSQMRPPVGP----RMPMYPPVAPGLGQQL-FYGQGP----PIIP- 446
AQRKEERRARLQA F+QMR V P +PMY P PG+ Q+ +YGQ P P+ P
Sbjct: 385 AQRKEERRARLQAAFAQMRTSVSPAVPTSLPMYHP-GPGMSPQMPYYGQHPSGPIPLQPA 443
Query: 447 -----PQVI 450
PQ+I
Sbjct: 444 AFGYQPQII 452
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/422 (70%), Positives = 358/422 (84%), Gaps = 10/422 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDL+ SV+DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN++ +A RAL
Sbjct: 45 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNF LN KPIR+MYS RDP+ R+SG+ NIFIKNLDK+IDNK LH+TFS+FG ILSCK
Sbjct: 105 EVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D GQS+G+GFVQ++ EE+A++AI LNGML+NDK VFVGPFLRKQER+ + DKT+F
Sbjct: 165 VAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKF 224
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNV+VKNLSE+TT++DL K+FGE+G ITS VM DGKS+CFGF+NF++PD A+R+V+
Sbjct: 225 NNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQE 284
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGKK +DKEWYVG+AQKK EREMELK +FEQSLK+ ADK++GLNLY+KNLDDSI DD+L
Sbjct: 285 LNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQL 344
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ELFS FG ITS KVMRD NG+S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQ
Sbjct: 345 RELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 404
Query: 399 RKEERRARLQAQFSQMRPPV------GPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIY 451
RKE+R+A LQAQFSQMRP V PR+PMYPP+AP QQLFYGQ PP +IPPQ +
Sbjct: 405 RKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAP---QQLFYGQAPPAMIPPQPGF 461
Query: 452 SF 453
F
Sbjct: 462 GF 463
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 292/412 (70%), Positives = 356/412 (86%), Gaps = 6/412 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
FVSTSLYVGDL+ +V+++QLY++F+Q+GQVVS+RVCRDL TRRSLGY YVNYN A +ATR
Sbjct: 21 FVSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATR 80
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF +NGKPIRIM+S+RDP+IRKSG NIFIKNLDKSIDNKALHDTF+ FG ILS
Sbjct: 81 ALELLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILS 140
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD GQS+GYGFVQF+ EESA++AI+K+NGMLLNDKQVFVGPF+R+QER+ + +
Sbjct: 141 CKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVS 200
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNNVYVKNL+++TT+D+LKK+F +G I+S VMRD +GKSKCFGFVNF+ DDAA++V
Sbjct: 201 KFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAV 260
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALNGKKFD+KEWYVG+AQKK ERE EL+ KFEQ KE +K++G+NLY+KNLDD+I D+
Sbjct: 261 EALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDE 320
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E+FSE+GTI SCKVMRDP G SRGSGFVAFS+ +EA++A+TEMNGKMV SKPLYVAL
Sbjct: 321 KLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVAL 380
Query: 397 AQRKEERRARLQAQFSQMRPPVGP----RMPMYPPVAPGLGQQL-FYGQGPP 443
AQRKEERR RLQA F+Q R PVGP +PMY P PG+G + +YGQ PP
Sbjct: 381 AQRKEERRNRLQAAFAQ-RTPVGPAVPTSLPMYHPAGPGMGPGMSYYGQHPP 431
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/415 (71%), Positives = 353/415 (85%), Gaps = 6/415 (1%)
Query: 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
VG A+ +TSLYVGDL+ SV DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN++
Sbjct: 28 VGVAQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSN 87
Query: 91 AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
+A RAL+ LNF PLN KPIR+MYS RDP+ R+SG+ NIFIKNLDK+IDNK LHDTFS
Sbjct: 88 PMDAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSA 147
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG ILSCKVATD +GQS+G+GFVQ++ EE A+SA+ LNGML+NDK V+VGPFLRKQER+
Sbjct: 148 FGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERD 207
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
++ DK RFNNV+VKNLSE+TT++DL KIF E+G ITS VM DGKS+CFGF+NF+ PD
Sbjct: 208 NSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPD 267
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA R+VE LNGKK +DKEWY G+AQKK EREM+LK +FEQS+K+ ADK++G NLY+KNLD
Sbjct: 268 DAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLD 327
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D ISDD+L+ELFS FG ITSCKVMRD NG+S+GSGFVAFST EEAS+A+TEMNGKM+ K
Sbjct: 328 DGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGK 387
Query: 391 PLYVALAQRKEERRARLQAQFSQMRP-PV----GPRMPMYPPVAPGLGQQLFYGQ 440
PLYVA AQRKEER+A LQAQFSQMRP P+ PR+PMYPP+AP LGQQLFYGQ
Sbjct: 388 PLYVAFAQRKEERKAMLQAQFSQMRPVPITPSMTPRLPMYPPMAP-LGQQLFYGQ 441
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/419 (70%), Positives = 353/419 (84%), Gaps = 9/419 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ SV DSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVN+N +A RAL+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF PLNGKPIR+MYS RDP+ R+SG+ NIFIKNLDK+ID+K LHDTFS FGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD +GQS+G+GFVQ+D E+A+SAI LNGML+NDK V+VGPFLRKQERE++ DKT+FNN
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNLSE+TT++DL KIFG +G ITS +M DGKS+CFGF+NF PDDAAR+VE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GKK +DKEWYVG+AQKK ERE+ELK +FEQS+K+ ADK++GLNLY+KNLDDSI DD+L E
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LFS +G ITSCK+MRD NG+S+GSGFVAFST LTEMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTLPFIQ--LTEMNGKMISGKPLYVAFAQRK 397
Query: 401 EERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
E+R+A LQAQFSQ+R P + PR+PMYPP+AP LGQQLFYGQ PP I+PPQ + F
Sbjct: 398 EDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAP-LGQQLFYGQAPPAIMPPQPGFGF 455
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 309/462 (66%), Positives = 368/462 (79%), Gaps = 12/462 (2%)
Query: 1 MAQVQV----QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQL 56
MAQVQ P V + + AT GI GV SLYVGDLD +V DSQL
Sbjct: 1 MAQVQAPSSHSPPPVVNDGSVTASATLGIGGGDGVNHG---ALCSLYVGDLDFNVTDSQL 57
Query: 57 YDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116
YD F ++ QVVSVRVCRD +T SLGYGYVNY+ +A +A+ +LN++ LNGK IRI YS
Sbjct: 58 YDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKLNYSTLNGKMIRITYS 117
Query: 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176
RD + R+SG GN+F+KNLDKS+DNK LH+TFS G I+SCKVA D +GQSRGYGFVQFD
Sbjct: 118 SRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFD 177
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
E+SAK+AI+KLNG +LNDKQ+FVGPFLRK+ERES ADK +F NVYVKNLSE TT+D+LK
Sbjct: 178 TEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDELK 237
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
FG++G I+S VMRD DGKS+CFGFVNF++P+DAAR+VEALNGKKFDDKEWYVGKAQK
Sbjct: 238 TTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQK 297
Query: 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
K ERE+EL ++EQ + +KF+GLNLYVKNLDD+++D+KL+ELF+EFGTITSCKVMRD
Sbjct: 298 KSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD 357
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP 416
P+G S+GSGFVAFS A EAS+ L EMNGKMV KPLYVALAQRKEERRA+LQAQFSQMRP
Sbjct: 358 PSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRP 417
Query: 417 P----VGPRMPMYPPVAPGLGQQLFYGQG-PPIIPPQVIYSF 453
VGPRMP++P APGLGQQ+FYGQG PPIIP Q + +
Sbjct: 418 AFIPGVGPRMPIFPGGAPGLGQQIFYGQGSPPIIPHQPGFGY 459
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/417 (70%), Positives = 355/417 (85%), Gaps = 7/417 (1%)
Query: 32 GDARQ-FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
G A+Q +TSLYVGDL+ +V DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNY+
Sbjct: 113 GAAQQPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSN 172
Query: 91 AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
+A RA++ LNF PLN KPIR+MYS RDP+ R+SG+ NIFIKNLDK+IDNK LHDTFS
Sbjct: 173 PMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSA 232
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG ILSCKVA D +GQS+G+GFVQ++ EESA+SA+ LNGML+NDK V+VGPFLRKQER+
Sbjct: 233 FGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERD 292
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
+++DK +FNNV+VKNLSE+TT++DL K+F E+G ITS VM DGKS+CFGFVNF+ PD
Sbjct: 293 NSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPD 352
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DAAR+VE LNGKK +DKEWYVG+AQKK EREM+LK +FEQS+K+ ADK++G NLY+KNLD
Sbjct: 353 DAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLD 412
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D I+DD+L+ELFS FG ITSCK+MRD NG+S+GSGFV+FST EEAS+ALTEMNGKM+ K
Sbjct: 413 DGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGK 472
Query: 391 PLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGP 442
PLYVA AQRKEER+A LQAQFSQMR P + PR+PMYPP+ P LGQQLFYGQ P
Sbjct: 473 PLYVAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPPM-PTLGQQLFYGQAP 528
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/414 (70%), Positives = 353/414 (85%), Gaps = 7/414 (1%)
Query: 32 GDARQ-FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
G A+Q +TSLYVGDL+ +V DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNY+
Sbjct: 113 GAAQQPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSN 172
Query: 91 AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
+A RA++ LNF PLN KPIR+MYS RDP+ R+SG+ NIFIKNLDK+IDNK LHDTFS
Sbjct: 173 PMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSA 232
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG ILSCKVA D +GQS+G+GFVQ++ EESA+SA+ LNGML+NDK V+VGPFLRKQER+
Sbjct: 233 FGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERD 292
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
+++DK +FNNV+VKNLSE+TT++DL K+F E+G ITS VM DGKS+CFGFVNF+ PD
Sbjct: 293 NSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPD 352
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DAAR+VE LNGKK +DKEWYVG+AQKK EREM+LK +FEQS+K+ ADK++G NLY+KNLD
Sbjct: 353 DAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLD 412
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D I+DD+L+ELFS FG ITSCK+MRD NG+S+GSGFV+FST EEAS+ALTEMNGKM+ K
Sbjct: 413 DGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGK 472
Query: 391 PLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYG 439
PLYVA AQRKEER+A LQAQFSQMR P + PR+PMYPP+ P LGQQLFYG
Sbjct: 473 PLYVAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPPM-PTLGQQLFYG 525
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/419 (70%), Positives = 352/419 (84%), Gaps = 5/419 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD +V DSQLYD F ++ QVVSVRVCRD +T SLGYGYVNY+ +A +A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ LNGK IRI YS RD + R+SG GN+F+KNLDKS+DNK LH+ FS G I+SCKV
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD +GQSRGYGFVQFD E+SAK+AI+KLNG +LNDKQ+FVGPFLRK+ERES ADK +F
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFT 225
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNLSE TT+D+LK FG++G I+S VMRD DGKS+CFGFVNF++P+DAAR+VEAL
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGKKFDDKEWYVGKAQKK ERE+EL ++EQ + +KF+GLNLYVKNLDD+++D+KL+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
ELF+EFGTITSCKVMRDP+G S+GSGFVAFS A EAS+ L EMNGKMV KPLYVALAQR
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 400 KEERRARLQAQFSQMRPP----VGPRMPMYPPVAPGLGQQLFYGQG-PPIIPPQVIYSF 453
KEERRA+LQAQFSQMRP VGPRMP++ APGLGQQ+FYGQG PPIIP Q + +
Sbjct: 406 KEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGY 464
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/419 (70%), Positives = 352/419 (84%), Gaps = 5/419 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD +V DSQLYD F ++ QVVSVRVCRD +T SLGYGYVNY+ +A +A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ LNGK IRI YS RD + R+SG GN+F+KNLDKS+DNK LH+ FS G I+SCKV
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD +GQSRGYGFVQFD E+SAK+AI+KLNG +LNDKQ+FVGPFLRK+ERES ADK +F
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFT 225
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNLSE TT+D+LK FG++G I+S VMRD DGKS+CFGFVNF++P+DAAR+VEAL
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGKKFDDKEWYVGKAQKK ERE+EL ++EQ + +KF+GLNLYVKNLDD+++D+KL+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
ELF+EFGTITSCKVMRDP+G S+GSGFVAFS A EAS+ L EMNGKMV KPLYVALAQR
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 400 KEERRARLQAQFSQMRPP----VGPRMPMYPPVAPGLGQQLFYGQG-PPIIPPQVIYSF 453
KEERRA+LQAQFSQMRP VGPRMP++ APGLGQQ+FYGQG PPIIP Q + +
Sbjct: 406 KEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGY 464
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/407 (73%), Positives = 355/407 (87%), Gaps = 6/407 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDLD+SV D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVN+++ +A RA++
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFTP+NGKPIRIMYS RDP+ RKSGA NIFIKNLDKSIDNKAL DTFS FG ILSCKV
Sbjct: 102 MLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKV 161
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
AT+ G+S+GYGFVQ++ +ESA++AI++LNGMLLNDK+V+VGPF+RKQERE+ +FN
Sbjct: 162 ATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFN 221
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNLSE+TTED+LK++FG+FG ITS V+R DGKS+CFGFVNF++PDDAAR+VE L
Sbjct: 222 NVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDL 281
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD-KL 338
NGKK DDKE YVG+AQKK EREM+LK KFE+S KETADK +G NLY+KNLD S+ DD KL
Sbjct: 282 NGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKL 341
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KELF+EFGTITSCKVMRD NG+++GSGFVAF ++E+AS+AL MNGKMV SKPLYVALAQ
Sbjct: 342 KELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALAQ 401
Query: 399 RKEERRARLQAQFSQ-----MRPPVGPRMPMYPPVAPGLGQQLFYGQ 440
RKEERRARLQAQFSQ M PPV PRMPMYPP PG+GQQ+FYGQ
Sbjct: 402 RKEERRARLQAQFSQMRPVVMPPPVAPRMPMYPPGVPGMGQQMFYGQ 448
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/463 (63%), Positives = 361/463 (77%), Gaps = 26/463 (5%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDA-------RQFVSTSLYVGDLDLSVND 53
MAQ+QVQP SP + G QF STSLYVGDLD +V +
Sbjct: 1 MAQIQVQP----------SPGSAGAVPVPVPVSVPVSPAAPNQFFSTSLYVGDLDPNVTE 50
Query: 54 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
QLYD+FNQ+ V+S+RVCRDL ++RSLGY YVNYN +A+RAL+ LNF+ +NGKPIRI
Sbjct: 51 GQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEMLNFSLVNGKPIRI 110
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S+RDP+IRKSG NIFIKNLDKSIDNKAL+DTF+ FGNILSCKVA DS GQSRGYGFV
Sbjct: 111 MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFV 170
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
QF+ E++A+SAI ++NGMLL +KQVFVGPF+R+QER+ T T+FNNVYVKNL + TT+D
Sbjct: 171 QFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDD 230
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
DLK++FGEFG I+S VMRD +GKSKCFGFVNF++ DDAA +VE LNGKK DDKEWYVG+
Sbjct: 231 DLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGR 290
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ERE EL+ +++Q KE +DK++G+NLY+KNLDD+I DDKL+ELF FGTI SCKV
Sbjct: 291 AQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKV 350
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA--RLQAQF 411
MRDP G S+GSGFVAFST EEA++A+TEMNG+MV +KP+YVALAQ+++ERR QAQF
Sbjct: 351 MRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDERRRFNAAQAQF 410
Query: 412 SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
+ R PVG +PM+ P A G+GQ +FYGQ PP PPQ
Sbjct: 411 APFRVPVGLGPAVASSVPMFHPGA-GMGQPVFYGQHPPAFPPQ 452
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/463 (63%), Positives = 360/463 (77%), Gaps = 26/463 (5%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDA-------RQFVSTSLYVGDLDLSVND 53
MAQ+QVQP SP + G QF STSLYVGDLD +V +
Sbjct: 1 MAQIQVQP----------SPGSAGAVPVPVPVSVPVSPAAPNQFFSTSLYVGDLDPNVTE 50
Query: 54 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
QLYD+FNQ+ V+S+RVCRDL ++RSLGY YVNYN +A+RAL+ LNF+ +NGKPIRI
Sbjct: 51 GQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEMLNFSLVNGKPIRI 110
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S+RDP+IRKSG NIFIKNLDKSIDNKAL+DTF+ FGNILSCKVA DS GQSRGYGFV
Sbjct: 111 MFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFV 170
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
QF+ E++A+SAI ++NGMLL +KQVFVGPF+R+QER+ T +FNNVYVKNL + TT+D
Sbjct: 171 QFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDATTDD 230
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
DLK++FGEFG I+S VMRD +GKSKCFGFVNF++ DDAA +VE LNGKK DDKEWYVG+
Sbjct: 231 DLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGR 290
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ERE EL+ +++Q KE +DK++G+NLY+KNLDD+I DDKL+ELF FGTI SCKV
Sbjct: 291 AQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKV 350
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA--RLQAQF 411
MRDP G S+GSGFVAFST EEA++A+TEMNG+MV +KP+YVALAQ+++ERR QAQF
Sbjct: 351 MRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDERRRFNAAQAQF 410
Query: 412 SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
+ R PVG +PM+ P A G+GQ +FYGQ PP PPQ
Sbjct: 411 APFRVPVGLGPAVASSVPMFHPGA-GMGQPVFYGQHPPAFPPQ 452
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 284/361 (78%), Positives = 319/361 (88%), Gaps = 6/361 (1%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD LNFTP NGKPIR+MYS+RDP+IRKSGAGNIFIKNLDK+ID+KALHDTFS FG+
Sbjct: 5 AARALDVLNFTPXNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGS 64
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA DS GQS+GYGFVQFDNEESA AI+KLNGMLLNDKQV+VGPFLRKQER+
Sbjct: 65 ILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVV 124
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
DK++FNNV+VKNLSETTTE+DL K F EFG +TS VMRDADGKS+CFGFVNF++ DDAA
Sbjct: 125 DKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAA 184
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+V+ LNGK DDKEWYVGKAQKK ERE+ELK +FEQ++KE ADK++G NLY+KNLDDSI
Sbjct: 185 RAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSI 244
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DDKLKELF+ FGTITSCKVMRDPNGISRGSGFVAFST +EAS+AL EMNGKMVVSKPLY
Sbjct: 245 GDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLY 304
Query: 394 VALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPP 447
VALAQRKE+RRARLQAQFSQ+R V PRMP+YPP PG+GQQLFYGQ PP +IP
Sbjct: 305 VALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAMIPS 364
Query: 448 Q 448
Q
Sbjct: 365 Q 365
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 171/292 (58%), Gaps = 17/292 (5%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD +++ L+D F+ G ++S +V D S+ +S GYG+V ++ A
Sbjct: 34 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALD-SSGQSKGYGFVQFDNEESA 92
Query: 95 TRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
+A+++LN LN K + + RD + KS N+F+KNL ++ + L+ FS
Sbjct: 93 LKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSE 152
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG + S V D+ G+SR +GFV F+N + A A+D LNG L++DK+ +VG +K ERE
Sbjct: 153 FGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSERE 212
Query: 211 ------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
ADK + N+Y+KNL ++ +D LK++F FG ITS VMRD +G S
Sbjct: 213 VELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGIS 272
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ GFV F PD+A+R++ +NGK K YV AQ+K +R L+ +F Q
Sbjct: 273 RGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQ 324
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ +LY+ +LD S+ D +L +LF G + S +V RD S G G+V ++ E
Sbjct: 227 ADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRD-PNGISRGSGFVAFSTPDE 285
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A+RAL E+N + KP+ + + R
Sbjct: 286 ASRALVEMNGKMVVSKPLYVALAQR 310
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/445 (64%), Positives = 347/445 (77%), Gaps = 14/445 (3%)
Query: 12 VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
VA AA P A G+A GG F + SLYVGDL+ +VN+ QLYDLF+Q+ Q+ S+RV
Sbjct: 13 VAAAATPVIAP-GVALGGG-----PFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRV 66
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD + R SLGY YVN+ A +A+ A++ LNFTPLNGKPIRIM+S RDP+IRKSG GN+F
Sbjct: 67 CRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVF 126
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLD SIDNKALHDTF+ FG +LSCKVA DS GQS+GYGFVQFDNEE+A++AI +LNGM
Sbjct: 127 IKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGM 186
Query: 192 LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
L+NDKQV+VG F+R+QERE T +F NVYVKNLSET T++DLKK+FG +G ITS VM
Sbjct: 187 LINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVM 246
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQ 310
+D +GKS+CFGFVNF +PD AA +VE LNG +D+ YVG+AQ+K ERE ELK K EQ
Sbjct: 247 KDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQ 306
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+K +G NLY+KNLDDS SD+KLK+LFSEFGTITSCKVM D NG S+GSGFV+FS
Sbjct: 307 ERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFS 366
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG-----PRMPMY 425
T EEASKAL EMNGK++ KPLYVA+AQRKEER+A LQAQF+Q+R P G +P+Y
Sbjct: 367 TPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRAPGGMAPLPAGIPLY 426
Query: 426 PPVAPGLG-QQLFYGQGPP-IIPPQ 448
P AP L QQL+YGQG P +PPQ
Sbjct: 427 HPGAPRLAPQQLYYGQGTPGFMPPQ 451
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 291/457 (63%), Positives = 351/457 (76%), Gaps = 15/457 (3%)
Query: 1 MAQVQVQPQA-PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDL 59
MA P A VA AA P A G+A GG F + SLYVGDL+ +VN+ QLYDL
Sbjct: 1 MAAAISSPMAQSVAAAATPVIAP-GVALGGG-----PFANASLYVGDLEGNVNEEQLYDL 54
Query: 60 FNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119
F+Q+ Q+ S+RVCRD + R SLGY YVN+ A +A+ A++ LNFTPLNGKPIRIM+S RD
Sbjct: 55 FSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRD 114
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
P+IRKSG GN+FIKNLD SIDNKALHDTF+ FG +LSCKVA DS GQS+GYGFVQFDNEE
Sbjct: 115 PSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEE 174
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
+A++AI +LNGML+NDKQV+VG F+R+QERE T +F NVYVKNLSET T++DLKK+F
Sbjct: 175 AAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLF 234
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKY 298
G +G ITS VM+D +GKS+CFGFVNF +PD AA +VE LNG +D+ YVG+AQ+K
Sbjct: 235 GPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKA 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE ELK K EQ +K +G NLY+KNLDDS SD+KLK+LFSEFGTITSCKVM D N
Sbjct: 295 EREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+GSGFV+FST EEASKAL EMNGK++ KPLYVA+AQRKEER+A LQAQF+Q+R P
Sbjct: 355 GRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRAPG 414
Query: 419 G-----PRMPMYPPVAPGLG-QQLFYGQGPP-IIPPQ 448
G +P+Y P AP L QQL+YGQG P +PPQ
Sbjct: 415 GMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQ 451
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/456 (62%), Positives = 349/456 (76%), Gaps = 23/456 (5%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MAQV QAP A P + + +V+ SLYVGDLD V++S+LY++F
Sbjct: 1 MAQVMQAQQAPTI--ATP------------ISGSSPYVAPSLYVGDLDPDVSESELYEVF 46
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
NQ+GQVVS+RVCRDL T++SLGY YVNY +A++AL+ LNFT + GKPIRIMYS+RDP
Sbjct: 47 NQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALELLNFTLVKGKPIRIMYSHRDP 106
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+IRKSGA NIFIKNL+KSIDNKALHDTFS FG ILSC+V D G S+GYGFVQF+ EES
Sbjct: 107 SIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEES 166
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AI+K+NGML+ND+QV V PF+RKQER+ + K FNNVYVKNL+E TT++DL+K+F
Sbjct: 167 AQIAIEKVNGMLINDRQVSVAPFIRKQERDMASSKN-FNNVYVKNLAEATTDEDLRKVFA 225
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG I+S VMRDADGKSKCFGFVNF++ DDAA +VE LNGK ++KEWYVG+AQKK ER
Sbjct: 226 GFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSER 285
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK KFEQ KE +KF+G+NLY+KN+DDSI D+KL+ELF+ FGT+TSCKVM+ P G
Sbjct: 286 EAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQ 345
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
S GSGFV FS EEA +A+ +MNGKMV SKPLYVALAQRKEERRARLQAQF+QM+
Sbjct: 346 SMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQAQFAQMQIVAPN 405
Query: 416 --PPVGPRMPMYPPVAPGLGQQLFYGQ-GPPIIPPQ 448
P MY P G+G Q+FYGQ P ++P Q
Sbjct: 406 APPMAPNPPSMYHPGPQGMGHQMFYGQPAPGLLPSQ 441
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/408 (68%), Positives = 336/408 (82%), Gaps = 9/408 (2%)
Query: 2 AQVQVQPQA-PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
AQV V P P AV A SP G VG A+ +TSLYVGDL+ +V+DSQLY+LF
Sbjct: 3 AQVAVVPNGGPGAVPAVVSP--------GAVGVAQPLPTTSLYVGDLEGAVSDSQLYELF 54
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
+Q GQVVSVRVCRD+++RRSLGY YVNY+ +A RAL+ LNF LN KPIR+MYS RDP
Sbjct: 55 SQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVLNFAALNNKPIRVMYSNRDP 114
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
+ R+SG+ NIFIKNLDK+IDNK LH+TFS+FG ILSCKVA D GQS+G+GFVQ+D EE+
Sbjct: 115 SSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEA 174
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AI LNGML+NDK VFVGPF+RKQER+ + DKT+FNNV+VKNLSE+TT++DL KIFG
Sbjct: 175 AQNAIKSLNGMLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFG 234
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E+G ITS VM DGKS+CFGF+NF++PD A+ +V+ LNGKK +DKEWYVG+AQKK ER
Sbjct: 235 EYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQKKSER 294
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
EMELK +FEQSLK+ ADK++GLNLY+KNLDDSI DD+L ELFS FG ITS KVMRD NG+
Sbjct: 295 EMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGL 354
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQRKE+R+A LQ
Sbjct: 355 SKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQ 402
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 155/286 (54%), Gaps = 17/286 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L+ ++ + L++ FS G ++S +V D + S GY +V + N A A++
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN LN+K + V R+ ++ ++ N+++KNL +T L + F FG I S
Sbjct: 95 LNFAALNNKPIRV----MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILS 150
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G+SK FGFV +D + A ++++LNG +DK +VG +K ER+
Sbjct: 151 CKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFVRKQERDHSF--- 207
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
DK + N++VKNL +S + + L ++F E+G ITS VM +G SR GF+
Sbjct: 208 ---------DKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFI 258
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
F + AS A+ E+NGK + K YV AQ+K ER L+ +F Q
Sbjct: 259 NFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQ 304
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 284/450 (63%), Positives = 340/450 (75%), Gaps = 16/450 (3%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
PQ+ VA Q S A G G F + SLYVGDLD ++ + QLYDLF Q+ V+
Sbjct: 13 PQSLSPVAVQQSTAMTGHTAAAG------FANASLYVGDLDTAIGEGQLYDLFQQVAPVL 66
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD + R SLGY YVN+ + +AT AL+ LNFTPLNGKPIRIM+S+RDP+IRKSG
Sbjct: 67 SIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGF 126
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+FIKNLD SIDNKAL DTF+ FG +LSCK+A D+ GQS+GYGFVQF+ EE+A++AI +
Sbjct: 127 ANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKR 186
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LNGML+NDKQV+VG F+R QER +F NVYVKNLSETTT+DDLK IFG++G ITS
Sbjct: 187 LNGMLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITS 246
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKG 306
VMRDA G SKCFGFVNF D AA +VE LNG F DDK WYVGKAQ+K ERE EL+
Sbjct: 247 AVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRA 306
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
KFEQ K +KF+G NLY+KNLDDS++D+KL ELFSEFGTITSCKVM DP G+S+GSGF
Sbjct: 307 KFEQERKNKFEKFKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGF 366
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYP 426
VAF T EEA++AL MNGKM+ KPLYVA+AQRKEER+ARLQAQF+Q+R P G P+
Sbjct: 367 VAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSP-GAMTPLQS 425
Query: 427 PV------APGLG-QQLFYGQGPP-IIPPQ 448
V AP L QQL++GQG P +IP Q
Sbjct: 426 GVPGFHSGAPRLAPQQLYFGQGTPGLIPTQ 455
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/422 (65%), Positives = 332/422 (78%), Gaps = 10/422 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F + SLYVGDLD ++ + QLYDLF Q+ V+S+RVCRD + R SLGY YVN+ + +AT
Sbjct: 469 RFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDAT 528
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
AL+ LNFTPLNGKPIRIM+S+RDP+IRKSG N+FIKNLD SIDNKAL DTF+ FG +L
Sbjct: 529 NALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVL 588
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCK+A D+ GQS+GYGFVQF+ EE+A++AI +LNGML+NDKQV+VG F+R QER
Sbjct: 589 SCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGS 648
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NVYVKNLSETTT+DDLK IFG++G ITS VMRDA G SKCFGFVNF D AA +
Sbjct: 649 PKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAA 708
Query: 276 VEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
VE LNG F DDK WYVGKAQ+K ERE EL+ KFEQ K +KF+G NLY+KNLDDS++
Sbjct: 709 VEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVN 768
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+KLKELFSEFGTITSCKVM DP G+S+GSGFVAF T EEA++AL MNGKM+ KPLYV
Sbjct: 769 DEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYV 828
Query: 395 ALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPV------APGLG-QQLFYGQGPP-IIP 446
A+AQRKEER+ARLQAQF+Q+R P G P+ V AP L QQL++GQG P +IP
Sbjct: 829 AVAQRKEERKARLQAQFAQIRSP-GAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGLIP 887
Query: 447 PQ 448
Q
Sbjct: 888 TQ 889
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/391 (69%), Positives = 322/391 (82%), Gaps = 7/391 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ SV DSQLY+ F GQV+SVRVCRD+ RS G YVN+N +A RAL+
Sbjct: 40 SLYVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALEL 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF PLNGKPIR+MYS RDP+ R+SG+ NIFIKNLDK+ID+K LHDTFS FGNILSCKVA
Sbjct: 99 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD +GQS+G+GFVQ+D E+A+SAI LNGML+NDK V+VGPFLRKQERE++ DKT+FNN
Sbjct: 159 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 218
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNLSE+TT++DL KIFG +G ITS +M DGKS+CFGF+NF PDDAAR+VE LN
Sbjct: 219 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 278
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GKK +DKEWYVG+AQKK ERE+ELK +FEQS+K+ ADK++GLNLY+KNLDDSI DD+L E
Sbjct: 279 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 338
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LFS +G ITSCK+MRD NG+S+GSGFVAFST EEAS+ALTEMNGKM+ KPLYVA AQRK
Sbjct: 339 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 398
Query: 401 EERRARLQAQFS---QMRP---PVGPRMPMY 425
E+R+A LQ F Q+ P P G MP Y
Sbjct: 399 EDRKAMLQPGFGFQQQLVPGMRPGGAHMPNY 429
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/424 (65%), Positives = 332/424 (78%), Gaps = 10/424 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A F + SLYVGDLD ++ + QLYDLF Q+ V+S+RVCRD + R SLGY YVN+ + +
Sbjct: 7 AAGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQD 66
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
AT AL+ LNFTPLNGKPIRIM+S+RDP+IRKSG N+FIKNLD SIDNKAL DTF+ FG
Sbjct: 67 ATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGT 126
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
+LSCK+A D+ GQS+GYGFVQF+ EE+A++AI +LNGML+NDKQV+VG F+R QER
Sbjct: 127 VLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGN 186
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+F NVYVKNLSETTT+DDLK IFG++G ITS VMRDA G SKCFGFVNF D AA
Sbjct: 187 GSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAA 246
Query: 274 RSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+VE LNG F DDK WYVGKAQ+K ERE EL+ KFEQ K +KF+G NLY+KNLDDS
Sbjct: 247 AAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDS 306
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
++D+KLKELFSEFGTITSCKVM DP G+S+GSGFVAF T EEA++AL MNGKM+ KPL
Sbjct: 307 VNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPL 366
Query: 393 YVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPV------APGLG-QQLFYGQGPP-I 444
YVA+AQRKEER+ARLQAQF+Q+R P G P+ V AP L QQL++GQG P +
Sbjct: 367 YVAVAQRKEERKARLQAQFAQIRSP-GAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGL 425
Query: 445 IPPQ 448
IP Q
Sbjct: 426 IPTQ 429
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/425 (63%), Positives = 335/425 (78%), Gaps = 6/425 (1%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G +A QF ++SLYVGDL+ +VN+ QL+DLF+Q+ QVVS+RVCRD + R SLGY YVN++
Sbjct: 23 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 82
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+A+ A++ LNFTPLNGK IRIM S+RDP++RKSG N+FIKNLD SIDNKAL +TF+
Sbjct: 83 NPQDASNAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 142
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+FG++LSCKVA D+ GQS+GYGFVQF+NEE+A+SAI++LNGML+NDK+VFVG F+R QER
Sbjct: 143 SFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 202
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+F NVYVKNLSETT+++DLKK F +G ITS VM+D GKSK FGFVNF P
Sbjct: 203 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSP 262
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D AA +VE LNG F+DK WYVG+AQ+K ERE ELK +FEQ +K + NLY+KNL
Sbjct: 263 DSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 322
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DD I D+KLKELFSEFG+ITSCKVM D G+S+GSGFVAFST EEAS+AL MNGKM+
Sbjct: 323 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 382
Query: 390 KPLYVALAQRKEERRARLQAQFSQMRPP-VGPR---MPMYPPVAPGLG-QQLFYGQGPP- 443
KPLYVA+AQR+EER+ARLQA F+Q++ P + P +P Y P AP L QQLF+GQG
Sbjct: 383 KPLYVAVAQRREERKARLQAHFTQIQAPGLSPMPSGLPGYHPGAPRLAPQQLFFGQGTAG 442
Query: 444 IIPPQ 448
++PPQ
Sbjct: 443 MMPPQ 447
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/421 (64%), Positives = 330/421 (78%), Gaps = 8/421 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QF + SLYVGDL+ +VN+ QLYDLF+Q+ QVVSVRVCRD + R SLGYGYVN++ +A
Sbjct: 41 QFANLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAA 100
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+ LNFTPLNGKPIRIM+S+RDP+IRKSG GN+FIKNLD ++DNK LH+TF+ FG +L
Sbjct: 101 NAMKALNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVL 160
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA DS GQS+GYGFVQF+NEESA+ AI L+GM LNDKQV+VG F+R+QER T
Sbjct: 161 SCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGS 220
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NVYVKNLSET T +DL+K+FG +G ITS VM+D GKS+ FGFVNF DPD AA +
Sbjct: 221 PKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAA 280
Query: 276 VEALNGKK-FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
VE LNG DDK WYVG+AQ+K ERE ELK KFEQ ++ + NLY+KNLDD+I+
Sbjct: 281 VEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNIN 340
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D KLKELFSEFG+ITSCKVM D G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYV
Sbjct: 341 DVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYV 400
Query: 395 ALAQRKEERRARLQAQFSQMRPP--VGPR---MPMYPPVAPGLG-QQLFYGQGPP-IIPP 447
A+AQRKEER+ARLQA F+ +R P + P +P Y AP L QQL++GQG P ++PP
Sbjct: 401 AIAQRKEERKARLQAHFALVRAPGALAPLPSGIPGYNAGAPRLAPQQLYFGQGTPGMMPP 460
Query: 448 Q 448
Q
Sbjct: 461 Q 461
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/425 (63%), Positives = 333/425 (78%), Gaps = 6/425 (1%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G +A QF ++SLYVGDL+ +VN+ QL+DLF+Q+ QVVS+RVCRD + R SLGY YVN++
Sbjct: 13 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 72
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+A A++ LNFTPLNGK IRIM S+RDP++RKSG N+FIKNLD SIDNKAL +TF+
Sbjct: 73 NPQDAANAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 132
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+FG +LSCKVA D+ GQS+GYGFVQF+NEE+A+SAI++LNGML+NDK+VFVG F+R QER
Sbjct: 133 SFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 192
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+F NVYVKNLSETT+++DLKK F +G ITS VM+D GKSK FGFVNF P
Sbjct: 193 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSP 252
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D AA +VE LNG F+DK WYVG+AQ+K ERE ELK +FEQ +K + NLY+KNL
Sbjct: 253 DSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 312
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DD I D+KLKELFSEFG+ITSCKVM D G+S+GSGFVAFST EEAS+AL MNGKM+
Sbjct: 313 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 372
Query: 390 KPLYVALAQRKEERRARLQAQFSQMRPP-VGPR---MPMYPPVAPGLG-QQLFYGQGPP- 443
KPLYVA+AQR+EER+ARLQA F+Q++ P + P +P Y P AP L QQLF+GQG
Sbjct: 373 KPLYVAVAQRREERKARLQAHFTQIQAPGLSPMPSGLPGYHPGAPRLAPQQLFFGQGTAG 432
Query: 444 IIPPQ 448
++PPQ
Sbjct: 433 MMPPQ 437
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/412 (62%), Positives = 332/412 (80%), Gaps = 7/412 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F ST+LYVGDLD SVN++Q++D+F Q+G V+SVR+CRD+ T+RSLGY YVNYN +A+R
Sbjct: 12 FASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASR 71
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A++ELNF P+NGKP+RIM+SYRDP+IRKSG+GN+F+KNLDKSIDNKALHD FS +G ILS
Sbjct: 72 AIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILS 131
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+A D S+G+GFVQFD E++A +AI+K+NG L+DKQ+FVGPF+R+QER+ A K
Sbjct: 132 CKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPPASK- 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
FNNV+VKNLSE TT++DL+K+FG FG I+S VM++ DGKSKCFGFVNF++P+DA ++V
Sbjct: 191 -FNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E L+G F DKE YV +AQKK ERE ELK KFE K+T DK NLY+KNLDD I D+
Sbjct: 250 EDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDK-SPTNLYLKNLDDGIDDE 308
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLK++FS FG +TSCKVMRDP G S+GSGFVAFST++ A +A+ +MNGKM+ SKPLYVA+
Sbjct: 309 KLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAM 368
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
AQ+KEER+A+L+AQF+ P P P+Y V GQQL Y + P++P Q
Sbjct: 369 AQKKEERKAKLEAQFASRGPVNFPPPPLYSAV----GQQLLYSRPAPMVPQQ 416
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 162/290 (55%), Gaps = 20/290 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S +L+V +LD S+++ L+DLF+ G+++S ++ D+S S G+G+V ++ A
Sbjct: 98 RKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSN-VSKGHGFVQFDTEDAA 156
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A++++N T L+ K + + RDP K N+F+KNL + ++ L F
Sbjct: 157 HTAIEKINGTTLHDKQLFVGPFVRRQERDPPASK--FNNVFVKNLSEITTDEDLQKLFGV 214
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I S V + G+S+ +GFV F+N E A A++ L+G DK+++V +K ERE
Sbjct: 215 FGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNERE 274
Query: 211 S------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
+ T DK+ N+Y+KNL + ++ LK +F FG +TS VMRD G S
Sbjct: 275 AELKAKFEHERKDTEDKSP-TNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHS 333
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K GFV F D A R+V +NGK K YV AQKK ER+ +L+ +F
Sbjct: 334 KGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQKKEERKAKLEAQF 383
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 276/437 (63%), Positives = 335/437 (76%), Gaps = 15/437 (3%)
Query: 20 PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
P T +A GG F+S+SLYVGDLD SVN+ QL +LF Q+ QVVS+RVCRD + R+
Sbjct: 21 PPTVAVATGGG------FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQ 74
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVN+++ +A A++ LNFTP+NGKPIRIM S RDP+IRKSG N+FIKNLD SI
Sbjct: 75 SLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSI 134
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DNKAL DTF+ FG +LSCKVA DS GQS+GYGFVQF++EESA+ +I+KLNGMLLNDKQV+
Sbjct: 135 DNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVY 194
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
VG F+R QER A+ ++F NVYVKNL ETTT+DDLK +F G ITS VM D++GKSK
Sbjct: 195 VGHFIRHQER-IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSK 253
Query: 260 CFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
CFGFVNF + D AA +VE L+G DDK YVG+AQ+K ERE ELK KFEQ K +K
Sbjct: 254 CFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEK 313
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
+G NLY+KNLDD I D+KLKELFSE+GTITSCKVM D +G+S+GSGFVAFS+ +EA+KA
Sbjct: 314 LQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKA 373
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG-PRMPM-YPPVAPGLG--- 433
L EMNGKM KPLYVA+AQRKEER+ARLQAQF+Q+R G +P P PG
Sbjct: 374 LNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVS 433
Query: 434 -QQLFYGQG-PPIIPPQ 448
QQ++YGQG P + PPQ
Sbjct: 434 PQQMYYGQGNPGLAPPQ 450
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 275/437 (62%), Positives = 335/437 (76%), Gaps = 15/437 (3%)
Query: 20 PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
P T +A GG F+S+SLYVGDLD SVN+ QL +LF Q+ QVVS+RVCRD + R+
Sbjct: 21 PPTVAVATGGG------FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQ 74
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVN+++ +A A++ LNFTP+NGKPIRIM S RDP+IRKSG N+FIKNLD SI
Sbjct: 75 SLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSI 134
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DNKAL DTF+ FG +LSCKVA DS GQS+GYGFVQF++EESA+ +I+KLNGMLLNDKQV+
Sbjct: 135 DNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVY 194
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
VG F+R QER A+ ++F NVYVKNL ETTT+DDLK +F G ITS VM D++GKSK
Sbjct: 195 VGHFIRHQER-IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSK 253
Query: 260 CFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
CFGFVNF + D AA +VE L+G DDK YVG+AQ+K ERE EL+ KFEQ K +K
Sbjct: 254 CFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEK 313
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
+G NLY+KNLDD I D+KLKELFSE+GTITSCKVM D +G+S+GSGFVAFS+ +EA+KA
Sbjct: 314 LQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKA 373
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG-PRMPM-YPPVAPGLG--- 433
L EMNGKM KPLYVA+AQRKEER+ARLQAQF+Q+R G +P P PG
Sbjct: 374 LNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVS 433
Query: 434 -QQLFYGQG-PPIIPPQ 448
QQ++YGQG P + PPQ
Sbjct: 434 PQQMYYGQGNPGLAPPQ 450
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 261/425 (61%), Positives = 330/425 (77%), Gaps = 7/425 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
QF + SLYVGDL+ +V + QL+DLF+Q+ VVS RVCRD + SLGY YVN++ +A
Sbjct: 29 QFPNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAA 88
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+A++ LNFTPLNGKPIRIM+S+RDPT R+SG N+FIKNLD IDNKAL++TF++FG +L
Sbjct: 89 KAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVL 148
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA D+ GQS+GYGF+QF+NEE A+SAI++LNGML+ND++V+VGPF+R+ ER
Sbjct: 149 SCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEANGS 208
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NVYVKNLSETT+++DLKKIF +G ITS VM+D +GKS+ FGFVNF PD AA +
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAA 268
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LNG F DK WYVG+AQ+K ERE ELK KFEQ +K + NLY+KNL D+I +
Sbjct: 269 VEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDE 328
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LKELFSEFG+ITSCKVM D G+S+GSGFVAFST EEAS+AL+EMNGKM+ KPLYVA
Sbjct: 329 ERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVA 388
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPM----YPPVAPGLG-QQLFYGQGPP-IIPPQV 449
+AQR+EER ARLQA FSQ++ P P +P Y P P L QL++GQG P ++PPQ
Sbjct: 389 IAQRREERMARLQAHFSQIQAPGLPTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMPPQP 448
Query: 450 I-YSF 453
YSF
Sbjct: 449 AGYSF 453
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/413 (62%), Positives = 319/413 (77%), Gaps = 5/413 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLY GDLD S ++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVN+ ++A RA+
Sbjct: 31 ATSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAI 90
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LNF +NGKPIRIMYS RDP +RKSG GNIFIKNLDK IDNKAL+DTF+ FGNI+S K
Sbjct: 91 DALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVSAK 150
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VATD GQS+GYGFVQFD EE A+SAI+K+NGMLLNDKQV+VGPF ++ ER T F
Sbjct: 151 VATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNER--GGGPTTF 208
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNVYVKNL E+ TE+ L+++F +FG +TS VM+DA+GKSK FGFV ++D + A +SVE
Sbjct: 209 NNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEE 268
Query: 279 LNG-KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+G K +DK W V +AQKK ERE ELK KF+ +E +K G NLY+KNL+D++ D K
Sbjct: 269 LDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAK 328
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ELF+EFGTITSC+VMRD G SRGS FVAFS+A+EA++A+TEMNGKM KPLYVALA
Sbjct: 329 LRELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALA 388
Query: 398 QRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPII--PPQ 448
QRKE+RR RLQAQF+Q + G M P P G ++YGQ PP + PPQ
Sbjct: 389 QRKEDRRLRLQAQFAQRQVAAGGMPNMGPYGMPPPGAPMYYGQPPPGVMGPPQ 441
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/432 (59%), Positives = 324/432 (75%), Gaps = 14/432 (3%)
Query: 21 ATNGIANNGGVGDARQ---FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
A+N AN G A Q ++SLYVGDL+ SV ++QLY+ F+ +G VVS+RVCRDL T
Sbjct: 15 ASNATANADGTTPAAQQPGAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLIT 74
Query: 78 RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDK 137
RRSLGY YVN+ + ++A A+D LNF +NGKPIR++YS RDP +R+SG GNIFIKNLDK
Sbjct: 75 RRSLGYAYVNFQSPNDAAHAIDVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDK 134
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+IDNKAL DTF+ FG I S KVA D G S+GYGFVQF+ +E+A++AID +NGM LNDKQ
Sbjct: 135 AIDNKALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQ 194
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
V+VGPF R+ ER +T + +FNNVYVKNLSE +++ L++ F E G +TS +MRD +GK
Sbjct: 195 VYVGPFQRRAERSNTGE-AKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGK 253
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD 317
SK FGFV +++P+ AA +VE L+G D+K W V +AQKK ERE ELK KF+Q +E +
Sbjct: 254 SKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQERRERME 313
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
K G NLY+KNL+D D+KL+ELF EFGTITSC+VMRD +G+SRGS FVAFS+ +EA++
Sbjct: 314 KMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATR 373
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG------PRMPMYPPVAPG 431
A+TEMNGKMV +KPLYVALAQRKEERR RLQAQF+Q P G P MP PP PG
Sbjct: 374 AVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFAQRMPGAGMPGGMAPYMP--PPGVPG 431
Query: 432 LGQQLFYGQGPP 443
++YGQ PP
Sbjct: 432 A--PMYYGQPPP 441
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/420 (60%), Positives = 317/420 (75%), Gaps = 13/420 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL+ +V+++QL+ LF ++G + S+RVCRD T RSLGY YVN+ +A A+
Sbjct: 5 NASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRD-ETNRSLGYAYVNFVNPQDAANAM 63
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNFTPLNGK IR+M+S RDP+IRKSG N+FIKNLD SIDNK LHDTF+ FG +LS K
Sbjct: 64 EHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVLSSK 123
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA DS+GQS+GYGFVQFDNEESA++AI +LNGML+NDK+V+VG F+ +QER +F
Sbjct: 124 VAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKF 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN SET T++DL+++F +G ITS VM+D DGKS+CFGFVNF+ PD A +VE
Sbjct: 184 TNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVER 243
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNG DDK YVG+AQ+K ERE ELK +FE +K+ G NLYVKNLD +I+DDK
Sbjct: 244 LNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDK 303
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKELFSEFGTITSCKVM +PNG S+G GFVAFS A++AL EMNGKM+ +PLYVA+A
Sbjct: 304 LKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVAVA 363
Query: 398 QRKEERRARLQAQFSQMRP-------PVGPRMPMYPPVAPGLG-QQLFYGQGPP-IIPPQ 448
QRKEER+A L+AQFSQM P G +P+Y P AP G Q L YGQG P ++ PQ
Sbjct: 364 QRKEERKALLEAQFSQMHALYAITHLPTG--IPVYHPGAPRHGPQALHYGQGAPSLVAPQ 421
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ T+LYV +LD ++ND +L +LF++ G + S +V + RS GYG+V ++A A
Sbjct: 284 KYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLE-PNGRSKGYGFVAFSAPRNAN 342
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RAL E+N + +P+ + + R
Sbjct: 343 RALHEMNGKMIGRRPLYVAVAQR 365
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/417 (61%), Positives = 314/417 (75%), Gaps = 12/417 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLY GDLD + ++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVN+ +A RA+
Sbjct: 19 ATSLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAI 78
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LNF +NGKPIRIMYS RDP +RKSG GNIFIKNLDK IDNKAL+DTFS FGNI+S K
Sbjct: 79 DVLNFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVSAK 138
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D G S+GYGFVQF +E+A+ AIDK+NGMLLNDKQV+VGPF R+ ER T F
Sbjct: 139 VAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGER--GGGPTTF 196
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNVYVKNL E+ ED LK++FG G +TS +M+D +GKSK FGFV F++ + A+ +VE
Sbjct: 197 NNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEK 256
Query: 279 LNG-KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+G K +DK W V +AQKK ERE ELK KF+ +E +K G NLY+KNL+D++ D K
Sbjct: 257 LDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDDAK 316
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ELF+EFGTITSC+VMRD +G SRGS FVAFS+A+EA++A+TEMNGKM +KPLYVALA
Sbjct: 317 LRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMNGKMAGTKPLYVALA 376
Query: 398 QRKEERRARLQAQFSQM----RPPVGPRMPMYPPVAPGLGQQLFYGQGPPII--PPQ 448
QRKE+RR RLQAQF+Q G M PP PG ++YGQ PP + PPQ
Sbjct: 377 QRKEDRRMRLQAQFAQRAVANGGMPGMPYGMPPPGVPG---AMYYGQPPPGVMGPPQ 430
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/389 (62%), Positives = 307/389 (78%), Gaps = 4/389 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVGDL+ S ++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVN++ A +A RA+
Sbjct: 42 NTSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAI 101
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LNF +NGKPIRI+YS RDPTIRKSG GNIFIKNLDK ID AL DTF+ FGNI+S K
Sbjct: 102 DVLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAK 161
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VATD G S+GYGF+QFD E +AK AI+K+NGM LNDK V+VGPF R+ ER +T +T+F
Sbjct: 162 VATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVGPFQRRAERGTT--ETKF 219
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNV+VKNL + T+++L+K+F FG +TS + +D DGKSK FGFV ++ P+DA+++VE
Sbjct: 220 NNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEE 279
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+GK +DK+W V +AQKK ERE ELK KFE +E +K G NLY+KNL+D D+
Sbjct: 280 LDGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGADDET 339
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ELF EFGTITSC+VMRD +G+SRGS FVAFS+ EEA++A+TE+NGKMV +KPLYVALA
Sbjct: 340 LRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALA 399
Query: 398 QRKEERRARLQAQFSQMR-PPVGPRMPMY 425
QRKE+RR RLQAQF+Q P G PMY
Sbjct: 400 QRKEDRRMRLQAQFAQRSMGPGGVMAPMY 428
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/424 (58%), Positives = 316/424 (74%), Gaps = 15/424 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SV++ QL DLFNQ+ V +VRVCRDL TRRSLGY YVN+ +A+RA+
Sbjct: 57 NSSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDL-TRRSLGYAYVNFANPEDASRAM 115
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS FG ILSCK
Sbjct: 116 DSLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCK 175
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D++G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R +
Sbjct: 176 VAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVP 235
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
RF NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF+ P+ AA +V
Sbjct: 236 RFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAV 295
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +NG + YVG+AQKK ERE EL+ KFEQ +K +G NLY+KNLDDS++D+
Sbjct: 296 EKMNGISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDE 355
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE+FSE+G +TSCKVM + G+SRG GFVA+S+ EEAS+AL+EMNGKM+ KPLYVA
Sbjct: 356 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAF 415
Query: 397 AQRKEERRARLQAQFSQMR-----PPVGPRMP---MYPPVAPGLGQQ---LFYGQ-GPPI 444
AQRKEERRA LQ F+ +R P+ MP +PP P G ++ GQ G +
Sbjct: 416 AQRKEERRAHLQTLFTHIRSPGTMSPIPSPMPGFHHHPPGGPMSGPHHPTMYIGQNGQGL 475
Query: 445 IPPQ 448
+PPQ
Sbjct: 476 VPPQ 479
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/409 (60%), Positives = 315/409 (77%), Gaps = 6/409 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A +F ++SLYVGDL +VND+QLYDLF+Q+ V+SVRVCRD T+ SLGYGYVNY+ A +
Sbjct: 19 AGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARD 78
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A A++ LN+ PLNGKPIRIM+S+RDP IRK+G N+FIKNL+ SIDNKALH+TFS FGN
Sbjct: 79 AANAMENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGN 138
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
+LSCKVA DS G S+G+GFVQFDN++SAK+AI+KL+G L+NDK+V+VG F+R QER S
Sbjct: 139 VLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSS-- 196
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+F NVYVKNLSE+ T +DLK++F FG+ITS +M+D +G SK FGFVNF D AA
Sbjct: 197 --PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAA 254
Query: 274 RSVEALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+VE LNG +D K +VG+AQKK ERE ELK FEQ + +KF+G NLY+KN+D S
Sbjct: 255 TAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKS 314
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
++++KLKELFSEFGTITSCKVM D G S+G GFVAF+T EEASKA+ EMNGK++ KP+
Sbjct: 315 LNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPV 374
Query: 393 YVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
YV++AQRKEER+A+LQA F ++ G + V QQ +Y QG
Sbjct: 375 YVSVAQRKEERKAQLQAHFPAIQVS-GGNAGYHSSVQRLAPQQFYYEQG 422
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373
+A +FE +LYV +L +++D +L +LFS+ + S +V RD S G G+V +S A
Sbjct: 18 SAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNAR 77
Query: 374 EASKALTEMNGKMVVSKPLYVALAQR 399
+A+ A+ +N + KP+ + + R
Sbjct: 78 DAANAMENLNYVPLNGKPIRIMFSHR 103
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/405 (58%), Positives = 312/405 (77%), Gaps = 6/405 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE---AT 95
++SLYVGDLD V ++QL+++F+Q+G V S+RVCRD TRRSLGY YVNYN+ + A
Sbjct: 37 NSSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAE 96
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD+LN+TPL G+P+RIM+S+RDP RKSG GNIFIKNLD+S+DNKALHDTFS FGNIL
Sbjct: 97 RALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNIL 156
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA D G+S+GYGFV F+ +ESA+ AI+K+NGMLL K+V+VGPFLR+ ER S ++
Sbjct: 157 SCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDSE- 215
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+F NV+VKNL E ++D++K +F E G + S +MRD +GKSK FGF+NF++P+ AA +
Sbjct: 216 VKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASA 275
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ALNGK + KE YVG+AQKK ERE L+ KFE+ E K++G+NLYVKNL D I D
Sbjct: 276 VQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDD 335
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+ L+ FS+FGTITS KVM D G SRG GFV +++ EEA++A+TEMNG+M+ KP+YVA
Sbjct: 336 ETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVA 395
Query: 396 LAQRKEERRARLQAQFSQ-MRPPVGPRMPMYPPV-APGLGQQLFY 438
LAQR++ RRA+L+ Q+ Q + P GPR PM P + PG +FY
Sbjct: 396 LAQRRDVRRAQLEQQYQQRVAMPPGPRGPMAPGMFPPGGAPPMFY 440
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/419 (59%), Positives = 309/419 (73%), Gaps = 14/419 (3%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q Q PV++ A PSPA V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 23 AQTSVQVPVSIPA-PSPA--------AVAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHV 72
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 73 ANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFERPIRIMLSNRDPSTR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++
Sbjct: 132 LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQA 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
AIDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+
Sbjct: 192 AIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
FG+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 252 FGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+S
Sbjct: 312 EELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLS 371
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP 420
RG GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQA FSQ+R P GP
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALAQRKEDRRAHLQALFSQIRAP-GP 429
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/327 (70%), Positives = 279/327 (85%), Gaps = 6/327 (1%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
RDP+ R+SG+ NIFIKNLDK+IDNK LHDTFS FG ILSCKVA D +GQS+G+GFVQ++
Sbjct: 1 RDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEK 60
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
EESA+SA+ LNGML+NDK V+VGPFLRKQER+++ DK +FNNV+VKNLSE+TT+DDL K
Sbjct: 61 EESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVK 120
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
+F +G ITS VM DGKS+CF FVNF+ PDDAAR+VE LNGKK +DKEWYVG+AQKK
Sbjct: 121 VFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKK 180
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
EREM+LK +FEQS+K+ ADK++G NLY+KNLDD I+DD+L+ELFS FG ITSCK+MRD
Sbjct: 181 SEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQ 240
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-- 415
NG+S+GSGFV+FST EEAS+ALTEMNGKM+ KPLYVA AQRKE+R+A LQAQFSQMR
Sbjct: 241 NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPV 300
Query: 416 ---PPVGPRMPMYPPVAPGLGQQLFYG 439
P + PR+PMYPP+ P LGQQLFYG
Sbjct: 301 PMTPSMTPRLPMYPPM-PTLGQQLFYG 326
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 164/293 (55%), Gaps = 17/293 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
+R+ S ++++ +LD ++++ L+D F+ G ++S +V D +S G+G+V Y
Sbjct: 5 SRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEES 63
Query: 94 ATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
A A+ LN +N KP+ + RD + K+ N+F+KNL +S L FS
Sbjct: 64 AQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFS 123
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
+G I S V G+SR + FV F++ + A A+++LNG +NDK+ +VG +K ER
Sbjct: 124 GYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSER 183
Query: 210 E------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
E ADK + N+Y+KNL + T+D L+++F FG ITS +MRD +G
Sbjct: 184 EMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGV 243
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
SK GFV+F ++A++++ +NGK K YV AQ+K +R+ L+ +F Q
Sbjct: 244 SKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ 296
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/456 (56%), Positives = 323/456 (70%), Gaps = 19/456 (4%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRM 422
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQA FSQ+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP-GPMS 431
Query: 423 PMY---PPVAPGLGQQLFYGQ-GPPIIPPQVI-YSF 453
+ PG Q ++ GQ G ++P Q I Y F
Sbjct: 432 GFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGF 467
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 258/456 (56%), Positives = 323/456 (70%), Gaps = 19/456 (4%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRM 422
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQA FSQ+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP-GPMS 431
Query: 423 PMY---PPVAPGLGQQLFYGQ-GPPIIPPQVI-YSF 453
+ PG Q ++ GQ G ++P Q I Y F
Sbjct: 432 GFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGF 467
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/396 (59%), Positives = 300/396 (75%), Gaps = 4/396 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDL+ SV ++QLY+ F+ +G VVS+RVCRDL TRRSLGY YVN+ ++ +A A+
Sbjct: 31 TSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAI 90
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D LNF +NGKPIR++YS RDP +R+SG GNIFIKNLDK+IDNKAL DTF+ FG I S K
Sbjct: 91 DVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAK 150
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA DS G S+GYGFVQF+ E+A++AID +NGM LNDKQV+VGPF R+ +R ST + +F
Sbjct: 151 VAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADR-STQGEAKF 209
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNVYVKNLSE +++ L++ F E G +TS +M+D +GKSK FGFV F+ P+ AA +VE
Sbjct: 210 NNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVEN 269
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
L+G D+K W V +AQKK ERE ELK KFE +E +K G NLY+KNL++ D+KL
Sbjct: 270 LDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKL 329
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ELF+EFGTITSC+VMRD +G SRGS FVAFS+ +EA++A+TEMNGKMV +KPLYVALAQ
Sbjct: 330 RELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQ 389
Query: 399 RKEERRA-RLQAQFSQMRPPVGP--RMPMYPPVAPG 431
RKEE A R A + + G R + P APG
Sbjct: 390 RKEEPHAGRWHAGYGPVHATAGCSGRADVLRPTAPG 425
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/425 (57%), Positives = 313/425 (73%), Gaps = 18/425 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER---ESTADK 215
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R ES A
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +
Sbjct: 237 S-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVA 295
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D
Sbjct: 296 VEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVND 355
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVA
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPP 443
LAQRKEER+A LQ+ F+Q+R P G P+ +PP P G +F G G
Sbjct: 416 LAQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 474
Query: 444 IIPPQ 448
++P Q
Sbjct: 475 LVPSQ 479
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/425 (57%), Positives = 313/425 (73%), Gaps = 18/425 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 102
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 103 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 162
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER---ESTADK 215
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R ES A
Sbjct: 163 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 222
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +
Sbjct: 223 S-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVA 281
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D
Sbjct: 282 VEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVND 341
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVA
Sbjct: 342 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 401
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPP 443
LAQRKEER+A LQ+ F+Q+R P G P+ +PP P G +F G G
Sbjct: 402 LAQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 460
Query: 444 IIPPQ 448
++P Q
Sbjct: 461 LVPSQ 465
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/425 (57%), Positives = 313/425 (73%), Gaps = 18/425 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 102
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 103 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 162
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER---ESTADK 215
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R ES A
Sbjct: 163 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 222
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +
Sbjct: 223 S-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVA 281
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D
Sbjct: 282 VEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVND 341
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVA
Sbjct: 342 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 401
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPP 443
LAQRKEER+A LQ+ F+Q+R P G P+ +PP P G +F G G
Sbjct: 402 LAQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 460
Query: 444 IIPPQ 448
++P Q
Sbjct: 461 LVPSQ 465
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/406 (58%), Positives = 298/406 (73%), Gaps = 13/406 (3%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQ
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQ 418
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/421 (53%), Positives = 306/421 (72%), Gaps = 12/421 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN++ + RAL
Sbjct: 38 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 97
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+T + GKP RIM+S RDP++RK+G+GN+FIKNLD SIDNKALHDTFS FGNILSCK
Sbjct: 98 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCK 157
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+A D G S+GYGFV ++ EE+A +AI ++GMLLNDK+V+VG + ++ER++ ++ R
Sbjct: 158 IALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRA 217
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL E+ ++ K++F +FG ITS V D +GKSK FGF+NF++ +DA ++V
Sbjct: 218 KFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAV 277
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN + + K YV +AQKK ERE EL+ ++EQ+ E K++G+NLY+KNLDD I D+
Sbjct: 278 DTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 337
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL++ FS +G ITS KVM D G S+G GFV FS+ +EA+KA+TEMNG+M+ SKP+YVAL
Sbjct: 338 KLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 397
Query: 397 AQRKEERRARLQAQFS---QMRPPVGPRMPMYPPVAPGL-------GQQLFYGQGPPIIP 446
AQRKE RR++L+AQ + QMR G MP P PG GQ + GQ P +
Sbjct: 398 AQRKEVRRSQLEAQMAQRNQMRMQQGMPMPGAPGYMPGAPMFYAPPGQFMPQGQRPTVFA 457
Query: 447 P 447
P
Sbjct: 458 P 458
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 160/294 (54%), Gaps = 19/294 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S ++++ +LD S+++ L+D F+ G ++S ++ D S S GYG+V+Y A
Sbjct: 122 RKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCKIALDESG-NSKGYGFVHYETEEAA 180
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTF 148
A+ ++ LN K + I R I + A N+++KNLD+SI+++ + F
Sbjct: 181 DNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMF 240
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FG I S V TD G+S+G+GF+ F+N E A A+D LN N K ++V +K E
Sbjct: 241 SKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLYVARAQKKTE 300
Query: 209 RESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE K ++ N+Y+KNL + ++ L++ F +G+ITS VM D G
Sbjct: 301 REEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKG 360
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
SK FGFV F PD+A ++V +NG+ K YV AQ+K R +L+ + Q
Sbjct: 361 TSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEVRRSQLEAQMAQ 414
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/398 (56%), Positives = 294/398 (73%), Gaps = 7/398 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSC+VA
Sbjct: 72 MNFDAIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCRVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD S+GYGFV F+ EE+A AI K+NGMLLN+K+V+VG F+ ++ERE DK R F
Sbjct: 132 TDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLGDKARCF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + +D L IF ++G ITS VM D GK++ FGFV+F++PD A R+VE
Sbjct: 192 TNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEE 251
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNGK + YVG+AQKK ER+ ELK FEQ +E ++++G+NLYVKNLDD++ D++L
Sbjct: 252 LNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERL 311
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F FG ITS KVM D NG S+G GFV FS+ EEA+KA+TEMNG++VVSKPLYVALAQ
Sbjct: 312 RKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQ 371
Query: 399 RKEERRARLQAQFSQMRPPVGPRM---PMYPPVAPGLG 433
RKE+R+A L +Q+ M G RM M+PP G+
Sbjct: 372 RKEDRKAHLASQY--MHRIAGMRMQMGQMFPPGGTGVA 407
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V D + RS G+G+V +++ EAT
Sbjct: 291 RYQGVNLYVKNLDDALDDERLRKEFGPFGNITSAKVMTD-ANGRSKGFGFVCFSSPEEAT 349
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 350 KAVTEMNGRIVVSKPLYVALAQR 372
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/376 (59%), Positives = 292/376 (77%), Gaps = 4/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD+ T+RSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ PL GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFSTFGNILSCKVA
Sbjct: 72 MNYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK--TRF 218
D G S+GYGFV F+ EE+A +IDK+NGMLLN K+VFVG F+ ++ERE + RF
Sbjct: 132 QDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELGEKAKRF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E ++D L+++F ++G ITS VM DGKSK FGFV F+DP+ A ++V +
Sbjct: 192 TNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVAS 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K +VG+AQKK ER+ ELK KFEQ E +++G+NLYVKN+DD+I D++
Sbjct: 252 LNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+AEEA+KA+TEMNG++V SKPLYVALA
Sbjct: 312 LRKEFTPFGTITSAKVMLE-DGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALA 370
Query: 398 QRKEERRARLQAQFSQ 413
QRKE+R+A L +Q+ Q
Sbjct: 371 QRKEDRKAHLASQYMQ 386
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 240/460 (52%), Positives = 317/460 (68%), Gaps = 26/460 (5%)
Query: 1 MAQVQVQPQAPVAVAAQP----SPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQL 56
MA P++ +A AA P +PA + G +SLYVGDL SV+++QL
Sbjct: 1 MASPSTTPRSTIAAAAVPVAEGTPAAAAVLPPLGS-------ISSLYVGDLAESVDETQL 53
Query: 57 YDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116
+ +F+Q+ +VSVRVCRD+ + SLGYGYVN+ + EAT AL+ LNF PL+GK IR+M+S
Sbjct: 54 HAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALEALNFAPLSGKHIRVMFS 113
Query: 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176
RDP++RKSG N+F+KNL+ SID+K L++ FS+FG ILSCKVATDS GQS+GYGFVQ++
Sbjct: 114 NRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYE 173
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
EESA+ AI++LNGML ND+++FVG +R++ RE +F NVY+KNL ++DDL+
Sbjct: 174 TEESAQDAINRLNGMLANDREMFVGLHMRRRNRE-----VKFTNVYIKNLPTEFSDDDLR 228
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
+ F FG ITS VMRD +G SKCFGFVNF+ P+ A +V+ NGK +DK YVG+AQK
Sbjct: 229 QEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQK 288
Query: 297 KYEREMELKGKFEQSLKE-TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR 355
K ER+ ELK KF+Q ++ DK G+NLY+KN+DDSI+D+ LK LF EFG +TSCKVM
Sbjct: 289 KAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMV 348
Query: 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
D G S+GSGFV F+TAE A+ MNG++V KPLYV LAQ KEERRA L A F+Q
Sbjct: 349 DAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVGLAQPKEERRAMLMAHFAQR- 407
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQ-GPPIIPPQ-VIYSF 453
M P P QQ+++G P IPPQ ++ F
Sbjct: 408 ---NLAMAASPYAGP---QQVYFGHPAPGQIPPQAAVFGF 441
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/279 (77%), Positives = 248/279 (88%), Gaps = 6/279 (2%)
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A+ AIDKLNGML+NDKQV+VG FLRKQEREST T+F NVYVKNLSE+TT+D LKK+FG
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS VMRDADGKSKCFGF+NF+ +DAA++VE+LNGKKFDDKEWYVGKAQKK ER
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK KFEQ+ KE DK++GLNLYVKNLDD+I D+KLKELFSEFGTITSCKVMRDP+GI
Sbjct: 121 EQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGI 180
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR----- 415
SRGSGFVAFST+EEAS+AL+EMNGKM+VSKPLYVALAQRKEERRA+L+AQFSQ+R
Sbjct: 181 SRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQLRPVAMP 240
Query: 416 PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P + PRMP+YPP APG+GQQLFYGQGPP +IPPQ + +
Sbjct: 241 PSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAGFGY 279
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 130/234 (55%), Gaps = 18/234 (7%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTF 148
A A+D+LN +N K + + + R R+S G N+++KNL +S + L F
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRK-QERESTTGMTKFQNVYVKNLSESTTDDGLKKVF 59
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FGNI S V D+ G+S+ +GF+ F+ E A A++ LNG +DK+ +VG +K E
Sbjct: 60 GEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSE 119
Query: 209 RE------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE DK + N+YVKNL +T ++ LK++F EFG ITS VMRD G
Sbjct: 120 REQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSG 179
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
S+ GFV F ++A+R++ +NGK K YV AQ+K ER +L+ +F Q
Sbjct: 180 ISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQ 233
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 17/187 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++YV +L S D L +F + G + S V RD + +S +G++N+ A +A +A++
Sbjct: 40 NVYVKNLSESTTDDGLKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAEDAAKAVES 98
Query: 101 LNFTPLNGKPIRI----MYSYRDPTIR------------KSGAGNIFIKNLDKSIDNKAL 144
LN + K + S R+ ++ K N+++KNLD +ID++ L
Sbjct: 99 LNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKL 158
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ FS FG I SCKV D G SRG GFV F E A A+ ++NG ++ K ++V
Sbjct: 159 KELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ 218
Query: 205 RKQERES 211
RK+ER +
Sbjct: 219 RKEERRA 225
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L +LF++ G + S +V RD S S G G+V ++ + EA+
Sbjct: 138 KYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSG-ISRGSGFVAFSTSEEAS 196
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RAL E+N + KP+ + + R
Sbjct: 197 RALSEMNGKMIVSKPLYVALAQR 219
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/421 (53%), Positives = 304/421 (72%), Gaps = 12/421 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN++ + RAL
Sbjct: 43 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 102
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+T + GKP RIM+S RDP++RK+G+GN+FIKNLD SIDNKALHDTFS FGNILSCK
Sbjct: 103 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCK 162
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+A D G S+GYGFV ++ EE+A +AI +NGMLLNDK+V+VG + K+ER++ ++ R
Sbjct: 163 IALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIEQFRA 222
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL E+ +++ ++ +FG ITS V D +GKSK FGFVNF++ +DA ++V
Sbjct: 223 KFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAV 282
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ALN + K YV +AQKK ERE EL+ ++EQ+ E K++G+NLY+KNLDD I D+
Sbjct: 283 DALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 342
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL++ FS +G ITS KVM D S+G GFV FS+ +EA+KA+TEMNG+M+ SKP+YVAL
Sbjct: 343 KLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 402
Query: 397 AQRKEERRARLQAQFS---QMRPPVGPRMPMYPPVAPGL-------GQQLFYGQGPPIIP 446
AQRKE RR++L+AQ + QMR G MP P PG GQ + GQ P +
Sbjct: 403 AQRKEIRRSQLEAQMAQRNQMRMQQGMPMPGAPGYMPGAPMFYAPPGQFMPQGQRPAVFA 462
Query: 447 P 447
P
Sbjct: 463 P 463
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 158/294 (53%), Gaps = 19/294 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S ++++ +LD S+++ L+D F+ G ++S ++ D S S GYG+V+Y A
Sbjct: 127 RKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCKIALDESG-NSKGYGFVHYETEEAA 185
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + R I + A N+++KNLD+S+ ++ ++
Sbjct: 186 DNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIEQFRAKFTNVYVKNLDESVKDEEFNEML 245
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
+ FG I S V TD G+S+G+GFV F+N E A+ A+D LN K ++V +K E
Sbjct: 246 AKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALNETEHKGKILYVARAQKKTE 305
Query: 209 RESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE K ++ N+Y+KNL + ++ L++ F +G+ITS VM D
Sbjct: 306 REEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKD 365
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
SK FGFV F PD+A ++V +NG+ K YV AQ+K R +L+ + Q
Sbjct: 366 TSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEIRRSQLEAQMAQ 419
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/376 (59%), Positives = 289/376 (76%), Gaps = 5/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRDL TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF P+ G+PIRIM+S RDP++RKSG GN+FIKNLDK IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D GQS+GYGFV F+ EESA ++I+K+NGMLLN+K+V+VG F+ ++ERE +K + F
Sbjct: 123 QDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E TE+ L+ +F +FG ITS VM DGKS+ FGFV F+ P+DA +V+
Sbjct: 183 TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVM-TKDGKSRGFGFVAFEKPEDAEEAVQK 241
Query: 279 LNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ D K YVG+AQKK ER+MELK +FEQ E ++ G+NLYVKNLDD+I D++
Sbjct: 242 LNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDER 301
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ +GTITS KVM D G S+G GFV FS +EA+KA+TEMNG++V SKPLYVALA
Sbjct: 302 LRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALA 360
Query: 398 QRKEERRARLQAQFSQ 413
QRKEER++ L +Q+ Q
Sbjct: 361 QRKEERKSHLASQYIQ 376
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 162/290 (55%), Gaps = 17/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N + + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 62 TMNFDPIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G+SK +GFV+F+ + A S+E +NG ++K+ YVG+ + ERE EL
Sbjct: 118 SCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELG- 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++++ L+++F +FG ITS +VM +G SRG GF
Sbjct: 177 -------EKAKLF--TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTK-DGKSRGFGF 226
Query: 367 VAFSTAEEASKALTEMNGKMVV-SKPLYVALAQRKEERRARLQAQFSQMR 415
VAF E+A +A+ ++NGK + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 227 VAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLK 276
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 24/191 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRAL 98
T++YV + + + L D+F + G + S RV +D +R G+G+V + +A A+
Sbjct: 183 TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTKDGKSR---GFGFVAFEKPEDAEEAV 239
Query: 99 DELNFTPL-NGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSID 140
+LN L +GK + + + + + R G N+++KNLD +ID
Sbjct: 240 QKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGV-NLYVKNLDDTID 298
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
++ L F+ +G I S KV D G+S+G+GFV F + A A+ ++NG ++ K ++V
Sbjct: 299 DERLRKEFAPYGTITSAKVMLDE-GRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYV 357
Query: 201 GPFLRKQERES 211
RK+ER+S
Sbjct: 358 ALAQRKEERKS 368
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V D RS G+G+V ++A EAT
Sbjct: 282 RYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEG--RSKGFGFVCFSAPDEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
+A+ E+N + KP+ + + R RKS + +I+ ++
Sbjct: 340 KAVTEMNGRIVGSKPLYVALAQRKEE-RKSHLASQYIQRVN 379
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/457 (51%), Positives = 308/457 (67%), Gaps = 21/457 (4%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
MA P AP+A P A +G SLYVGDL +V++ QL+ LF
Sbjct: 1 MASPSTTPSAPIAAEVVPVAEGTPAAVLPPLGSM-----ASLYVGDLAETVDEPQLHALF 55
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
+Q+ V +VRVCRD+ + SLGYGYVN+ + EATRAL+ LNFTPL GK IR+M+S RDP
Sbjct: 56 SQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEALNFTPLIGKYIRVMFSNRDP 115
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
++RKSG N+F+KNL+ +ID+K L++ FS+FG ILSCKVATDS GQS+GYGFVQ++ EES
Sbjct: 116 SLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEES 175
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
A++AI+ LNGML N++++FVG +R+++RE +F NVY+KNL +EDDL++ F
Sbjct: 176 AEAAINGLNGMLANNRKMFVGLHMRRRDRE-----VKFTNVYIKNLPTEFSEDDLRQEFA 230
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG ITS VMRDADG SKCFGFVNF P+ A +VE NGK DK YVG+AQKK ER
Sbjct: 231 PFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEER 290
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
+ ELK +F + DK G+NLY+KN+DD I+D+ LK+LF EFG + SCKVM D G
Sbjct: 291 KAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGR 350
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP 420
S+GSGFV+F+TAE +A+ MNG++V KPLYV LAQ KEER+A L A F+Q +
Sbjct: 351 SKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAMAA 410
Query: 421 RMPMYPPVAPGLGQQLFYGQGP---PIIPPQ-VIYSF 453
P QQ+++G PI PPQ ++ F
Sbjct: 411 SQYAGP-------QQVYFGHPSSPGPIAPPQGAVFGF 440
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I+D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GINDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/416 (54%), Positives = 300/416 (72%), Gaps = 15/416 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S+SLYVGDL V++S L+++FNQ+G V ++R+CRD +TRRSL Y Y+NY+ + +A R
Sbjct: 5 FSSSSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAER 64
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN TP+ GK RIM+S RDP++RKSG GNIFIKNLDK++D+KAL+DTFS FGNILS
Sbjct: 65 ALDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNILS 124
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKV TD S+G+GFV ++++ESA+ AI K+NGM++N+++VFVGPF +ER +T +
Sbjct: 125 CKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGATQE-V 183
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
++ NV++KNLSE +E L + G IT+ +M D GKSK FGF NF+ D A +V
Sbjct: 184 KYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAV 243
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E NGK F K YVG+AQKK ERE ELK KFE K++G+NLY+KNLDDSI D
Sbjct: 244 ENENGKMFSGKVIYVGRAQKKLEREAELKHKFE-------TKYQGVNLYIKNLDDSIDSD 296
Query: 337 KLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+ FS +GTITS KVMRD G S+G GFV +ST +EASKA+ EM+G+MV SKPLYVA
Sbjct: 297 KLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVA 356
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFY-GQGPPIIPPQVI 450
AQRK+ RRA+L+AQ ++ + P +YPP P +FY G P++ PQ+I
Sbjct: 357 FAQRKDVRRAQLEAQHTKFKSSRMPVQSIYPPTGP-----IFYPPAGMPVVYPQMI 407
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD S++ +L F+ G + S +V RD S G+G+V Y+ EA+
Sbjct: 278 KYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEAS 337
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E++ + KP+ + ++ R
Sbjct: 338 KAVAEMHGRMVGSKPLYVAFAQR 360
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/415 (54%), Positives = 296/415 (71%), Gaps = 15/415 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD +V ++QL+ +F+QMG V SVRVCRD TRRSLGYGYVNY++ +A RA++
Sbjct: 38 VSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAME 97
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN+TP+NGK IRIM+S+RDP+ RKSG GNIFIKNLD+SIDNKALHDTF FG ILSCK+
Sbjct: 98 ALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKI 157
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A G+S+GYGFV F+ +E+A AI+K+NGM L K+VFV F+++ +R + +T+F
Sbjct: 158 AHQD-GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFT 216
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV+VKNL E+++K+ F FG+IT+ +M+D + KSK FGFVNFDDP+ A +VE +
Sbjct: 217 NVFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETM 276
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + YVG+AQKK ERE L+ +FE+ E K++G NLYVKNLDDSI D+ LK
Sbjct: 277 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 336
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS +G ITS KVMRD GIS+G GFV F++ EEAS+A TE NG M+ KP+YVA+AQR
Sbjct: 337 QEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQR 396
Query: 400 KEER----RARLQAQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIPPQV 449
KE R + + + S + PP G ++ YPPV Y PP + PQV
Sbjct: 397 KEIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPPV---------YYAAPPALLPQV 442
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 288/384 (75%), Gaps = 4/384 (1%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+
Sbjct: 3 ASAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 212 T--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 390 KPLYVALAQRKEERRARLQAQFSQ 413
KPLYVALAQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ 384
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 211/376 (56%), Positives = 286/376 (76%), Gaps = 2/376 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVG+LD V ++ L+++FN +G V SVRVCRD TRRSLGY YVNY ++ RALD
Sbjct: 74 VSLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALD 133
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ + GKP RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FG +LSCKV
Sbjct: 134 QLNYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSCKV 193
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTR 217
ATD G S+GYGFV +D+ E+A++AI +NGMLLNDK+VFVG + ++ER+S D K+
Sbjct: 194 ATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKSH 253
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E++ + +F +FG ITS + +D +G SK FGFVNF++ +DA R+VE
Sbjct: 254 FTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVE 313
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+ K+ K +VG+AQKK ERE EL+ ++EQ+ E A K++G NLY+KNL+D + D+K
Sbjct: 314 ELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEK 373
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ F FGTITSCKVMRD G S+G GFV FS+ +EA++A++EMN K+V +KPLYVALA
Sbjct: 374 LRAEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALA 433
Query: 398 QRKEERRARLQAQFSQ 413
QRK+ R+ +L++Q +Q
Sbjct: 434 QRKDVRKQQLESQIAQ 449
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/377 (58%), Positives = 288/377 (76%), Gaps = 5/377 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ L++ F+ G V+S+RVCRDL TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK IDNKA++DTFS FGNILSCKV
Sbjct: 71 TMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR- 217
A D GQS+GYGFV F+ EESA ++I+K+NGMLLN+K+VFVG F+ ++ERE +K +
Sbjct: 131 AQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKL 190
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN E TE+ L ++F ++G ITS VM DGKS+ FGFV F++PD A R+V+
Sbjct: 191 FTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMK-DGKSRGFGFVAFENPDAAERAVQ 249
Query: 278 ALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LN K+ D K YVG+AQKK ER+MELK +FEQ E ++ G+NLYVKNLDD+I D+
Sbjct: 250 ELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDE 309
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L++ F+ +GTITS KVM D G S+G GFV FS +EA+KA+TEMNG++V SKPLYVAL
Sbjct: 310 RLRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVAL 368
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKEER++ L +Q+ Q
Sbjct: 369 AQRKEERKSHLASQYIQ 385
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 160/290 (55%), Gaps = 17/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N + + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDTIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G+SK +GFV+F+ + A S+E +NG ++K+ +VG+ + ERE EL
Sbjct: 127 SCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++++ L E+F ++G+ITS +VM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMK-DGKSRGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVV-SKPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+N K + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 236 VAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLK 285
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V D RS G+G+V ++A EAT
Sbjct: 291 RYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEG--RSKGFGFVCFSAPDEAT 348
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
+A+ E+N + KP+ + + R RKS + +I+ ++
Sbjct: 349 KAVTEMNGRIVGSKPLYVALAQRKEE-RKSHLASQYIQRVN 388
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/444 (53%), Positives = 308/444 (69%), Gaps = 21/444 (4%)
Query: 20 PATNGIA----NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
P TN +A N G +A S ++YVGDL VN++ L+++F+ +G V SVRVCRD+
Sbjct: 53 PDTNKVAAATRNIGTETNAPSVSSATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDI 112
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPL---NGKPIRIMYSYRDPTIRKSGAGNIFI 132
TRRSLGY YVN+++ +A RAL+ +NF KP+R+M+ RDPTIRKSGAGN+FI
Sbjct: 113 VTRRSLGYAYVNFHSMDDAERALETMNFYACPQTRDKPMRLMWKNRDPTIRKSGAGNVFI 172
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDK+IDNK L DTFS FGNILSCKVATD G S GYGFV F+N E A++AI+K+NGML
Sbjct: 173 KNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGML 232
Query: 193 LNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVM 251
LNDKQV+VG F +QERE++ + F NVY KNL TE+ ++++F +G ITS V
Sbjct: 233 LNDKQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVP 292
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
D + K F FVNF P+ AA++VE LNG+ F+ K YVG+AQKK ERE EL+ K E
Sbjct: 293 VDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENK 352
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
E K++G+NLYV+NL D + ++ L++ FS FGT+TSC+VMRD G+SRG GFV FST
Sbjct: 353 RAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFST 412
Query: 372 AEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ-----FSQMRPPVGPRMPMYP 426
EEA+KA+TEMNGKM+ KPLYV LAQRKE R+A+L+AQ +R P +YP
Sbjct: 413 PEEATKAVTEMNGKMMGKKPLYVCLAQRKEIRQAQLEAQRIAAAAGGLRIPGAVPGSLYP 472
Query: 427 -PVAPGLGQQLFYGQGPPIIPPQV 449
P AP +FY Q P +PPQ+
Sbjct: 473 QPGAP-----MFYPQ--PGVPPQM 489
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/383 (57%), Positives = 291/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DSI+D++L+ F+ FGTITS KVM + +G S+G GFV FS EEA+KA+TEMNG+++V+K
Sbjct: 305 DSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/383 (57%), Positives = 291/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DSI+D++L+ F+ FGTITS KVM + +G S+G GFV FS EEA+KA+TEMNG+++V+K
Sbjct: 305 DSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQK+ ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/380 (57%), Positives = 286/380 (75%), Gaps = 4/380 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+ SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A
Sbjct: 29 HYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 88
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNIL
Sbjct: 89 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 148
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 149 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 207
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E +D+LK++F +FG S VMRD GKSK FGFV+++ +DA
Sbjct: 208 KAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDAN 267
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I
Sbjct: 268 KAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 327
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLY
Sbjct: 328 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 386
Query: 394 VALAQRKEERRARLQAQFSQ 413
VALAQRKEER+A L Q+ Q
Sbjct: 387 VALAQRKEERKAHLTNQYMQ 406
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S +S G+G+V+Y +
Sbjct: 209 AKEF--TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHED 265
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 266 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 325
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 326 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 384
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 385 LYVALAQRKEER-----KAHLTNQYMQRVA 409
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/415 (53%), Positives = 295/415 (71%), Gaps = 15/415 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD +V ++QL+ +F+QMG V SVRVCRD TRRSLGYGYVNY++ +A RA++
Sbjct: 37 VSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAME 96
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN+TP+NGK IRIM+S+RDP+ RKSG GNIFIKNLD+SIDNKALHDTF FG ILSCK+
Sbjct: 97 ALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKI 156
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A G+S+GYGFV F+ +E+A AI+K+NGM L K+VFV F+++ +R + +T+F
Sbjct: 157 AHQD-GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFT 215
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV+VKNL E+++ + F FG+IT+ +M+D + KSK FGFVNFDDP+ A +VE +
Sbjct: 216 NVFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETM 275
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + YVG+AQKK ERE L+ +FE+ E K++G NLYVKNLDDSI D+ LK
Sbjct: 276 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 335
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS +G ITS KVMRD GIS+G GFV F++ EEAS+A TE NG M+ KP+YVA+AQR
Sbjct: 336 QEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQR 395
Query: 400 KEER----RARLQAQFSQMRPPVGPRM-PMYPPVAPGLGQQLFYGQGPPIIPPQV 449
KE R + + + S + PP G ++ YPPV Y PP + PQV
Sbjct: 396 KEIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPPV---------YYAAPPALLPQV 441
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/404 (57%), Positives = 297/404 (73%), Gaps = 12/404 (2%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
N G G+ + SLYVGDLD V +S L++ F Q G V+S+RVCRD+ +RRSLGY YVN
Sbjct: 2 NSGGGN---YTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVN 58
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
++ +A RALD +NF PL +P+RIM+S RDP++RKSG GN+FIKNL K IDNKA+ DT
Sbjct: 59 FHQPGDAERALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDT 118
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSC+VATD G SRGYGFV F+ EE+A AI+K+NGMLLN+K+VFVG F+ +
Sbjct: 119 FSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRS 178
Query: 208 ERES-TADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
ERE DK R F NVYVKN E + LK++F +G ITS VM D GKS+ FGFV+
Sbjct: 179 ERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVS 238
Query: 266 FDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
F++PD+A ++V+ LN K+ + K+ YVG+AQKK ER +LK KFEQ E +++G+NL
Sbjct: 239 FENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNL 298
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMN 383
YVKNLDD I D++L+ F+ +GTITS KVM D G S+G GFV FS+ EEA+KA+TEMN
Sbjct: 299 YVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMN 358
Query: 384 GKMVVSKPLYVALAQRKEERRARLQAQFSQ----MRPPVGPRMP 423
G+++V KPLYVALAQRKE+RRA L +QF Q +R P G +MP
Sbjct: 359 GRIIVQKPLYVALAQRKEDRRAHLSSQFVQRFTGVRVPFG-QMP 401
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 22 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 81
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 82 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 141
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 142 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 200
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 201 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 260
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 261 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 320
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 321 TIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 379
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 380 LYVALAQRKEERKAHLTNQYMQ 401
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/383 (57%), Positives = 291/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DSI D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+K
Sbjct: 305 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++DDKLKE+F ++GTITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 165/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKSIDR 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L + F +G I
Sbjct: 159 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV G+SRG+GFV F++ ++A+ A+ +LNG + + K ++VG +K ER+
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK F
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q L
Sbjct: 338 GFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 388
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
+ RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 SERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/415 (55%), Positives = 301/415 (72%), Gaps = 11/415 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S SLYVGDL V ++QL+++FN +G VVS+RVCRD TRRSLGY YVN++AA +A R
Sbjct: 42 FPSGSLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN++ + GKP RIM+S RDP +RKSG GN+FIKNLDK+IDNKAL DTFS FGNILS
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILS 161
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADK 215
CKV TD G S+GYGFV ++ +E+A++AI K+NGM++N KQVFVG F+ ++ER E
Sbjct: 162 CKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVELGEGV 220
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAAR 274
T+F NV+VKNL E TT+ L +F +FG ITS +M+ + D KSK FGFV ++ +DA
Sbjct: 221 TKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQA 280
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V ALNG + K +V +AQKK ERE ELK +++ E +K++G+NLYVKNLDD+I
Sbjct: 281 AVNALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAID 340
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPL 392
+DK++ F+ FGTITS K+MRD G SRG GF+ FS+AEEA+KA+TEMNG+ + KPL
Sbjct: 341 EDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKPL 400
Query: 393 YVALAQRKEERRARLQAQFSQMRPPVGPRM-----PMYPPVAPGLGQQLFYGQGP 442
YVALAQR E+RRA+L A F+Q R +G RM PP G Q+FY P
Sbjct: 401 YVALAQRAEDRRAQLAAHFAQQRGNMGGRMAGGVIAGMPPQYMA-GPQMFYAGVP 454
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/383 (57%), Positives = 291/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DSI D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+K
Sbjct: 305 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++DDKLKE+F ++GTITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 165/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKSIDR 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L + F +G I
Sbjct: 159 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV G+SRG+GFV F++ ++A+ A+ +LNG + + K ++VG +K ER+
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK F
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q L
Sbjct: 338 GFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 388
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++ KSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/383 (57%), Positives = 291/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DSI D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+K
Sbjct: 305 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++DDKLKE+F ++GTITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 165/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKSIDR 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L + F +G I
Sbjct: 159 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV G+SRG+GFV F++ ++A+ A+ +LNG + + K ++VG +K ER+
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK F
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q L
Sbjct: 338 GFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 388
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/396 (56%), Positives = 291/396 (73%), Gaps = 8/396 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E +D LK IF ++G S VM D +GKS+ FGFV+F+ +DA R+V+
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM D G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
RKEER+A L Q+ Q +R P + Y P P
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPP 405
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/383 (57%), Positives = 291/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DSI D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+K
Sbjct: 305 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++DDKLKE+F ++GTITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 165/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKSIDR 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L + F +G I
Sbjct: 159 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV G+SRG+GFV F++ ++A+ A+ +LNG + + K ++VG +K ER+
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK F
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q L
Sbjct: 338 GFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 388
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/407 (54%), Positives = 297/407 (72%), Gaps = 8/407 (1%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDL VN++QLY+ FN G + S+RVCRD TRRSLGY YVN+ ++A RALD L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
NF P+NGKP RIM+S RDP++R+SG GNIFIKNL+K IDNKA++DTFS FGNILSCK+A
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIAL 140
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTAD-KTRFN 219
D G S+GY FV F+ +E+A AI+K+NGMLL+ K+VFVG F+ ++ER E + ++
Sbjct: 141 DENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYT 200
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKN + ++D+ + +F + G I S VMRD GKS+ FGFV+++ + A ++VE L
Sbjct: 201 NLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETL 260
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+FD + YV +AQKK ER L+ ++EQ +E +F+G+NLYVKNLDD I D KL+
Sbjct: 261 NEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLR 320
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F+ FGTITS KVM D GISRG GFV FS+ EEA+KA+TEMNG++++SKPLYVALAQR
Sbjct: 321 QEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQR 380
Query: 400 KEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 446
KE+R+A+L AQ+ Q + R+P P PG+ Q + QG +P
Sbjct: 381 KEDRKAQLAAQYVQRMSTL--RIPQ--PGQPGVNQ--MFQQGGYYMP 421
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 28/207 (13%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+LYV + ++D + DLF Q G++VS V RD S +S G+G+V+Y A +A++
Sbjct: 200 TNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSG-KSRGFGFVSYETHEAAQKAVE 258
Query: 100 ELNFTPLNGKPIRIMY-------SYRDPTIRKS------------GAGNIFIKNLDKSID 140
LN + +R MY S R +R+ N+++KNLD ID
Sbjct: 259 TLNEKEFD---LRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVID 315
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
+ L F+ FG I S KV +D G SRG+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 316 DAKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYV 375
Query: 201 GPFLRKQERESTADKTRFNNVYVKNLS 227
RK++R K + YV+ +S
Sbjct: 376 ALAQRKEDR-----KAQLAAQYVQRMS 397
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
++F +LYV +LD ++D++L F G + S +V D S G+G+V +++ EA
Sbjct: 298 KRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSD-EKGISRGFGFVCFSSPEEA 356
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E+N + KP+ + + R
Sbjct: 357 TKAVTEMNGRIIISKPLYVALAQR 380
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG++G S VM D +GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++ KSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/383 (57%), Positives = 289/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D+I D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG++V SK
Sbjct: 305 DTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++DDKLKE+F ++GTITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 168/291 (57%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D+
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGA-SKGYGFVHFETEEAANKSIDK 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L + F +G I
Sbjct: 159 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV + G+SRG+GFV F++ ++A+ A+ +LNG +++ K ++VG +K ER+
Sbjct: 219 TSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQEL 278
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL +T ++ L+K F FG ITS VM + +G+SK F
Sbjct: 279 KRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 338 GFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 388
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/402 (54%), Positives = 293/402 (72%), Gaps = 4/402 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALD 99
SLYVGDL+ SV + QL LF+Q+ V S VCRD++ R+SLGYGYVN+ + +ATRA++
Sbjct: 85 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 144
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFT +NGKPIR+M+S RDPT+RKSG N+FIKNL+ +IDNK+L++ FS+FG ILS KV
Sbjct: 145 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 204
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD G+S+GYGF+QF++E SAK AI+ LNGML N +++FVG F+R+QERE T D F
Sbjct: 205 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 264
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL + +++DL F FG ITS VMRDA+G S+CFGFVNF+ + A +V+ L
Sbjct: 265 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 324
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGK D YV +AQKK ER+ ELK KFE + +K + +NLY+KNLDD I+D+ L+
Sbjct: 325 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+LF FG + SCKVM D +G S+G GFV+F+T E+A+ A+ +MNGKMV KPLYVA+AQR
Sbjct: 385 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 444
Query: 400 KEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
KEER+A L A F+++R + P +AP Q +G G
Sbjct: 445 KEERKAFLAAHFARVRALATMAPTLGPNIAP---HQFNFGHG 483
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/383 (57%), Positives = 290/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK +F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DSI D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+K
Sbjct: 305 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++DDKLK++F ++GTITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 165/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKSIDR 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L D F +G I
Sbjct: 159 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV G+SRG+GFV F++ ++A+ A+ +LNG + + K ++VG +K ER+
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK F
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q L
Sbjct: 338 GFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 388
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/383 (57%), Positives = 290/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E T+D LK +F ++G ITS VM DGKS+ FGFV F+DPD
Sbjct: 185 GEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLD
Sbjct: 245 AEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DSI D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+K
Sbjct: 305 DSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLASQYMQ 386
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++DDKLK++F ++GTITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 165/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKSIDR 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L D F +G I
Sbjct: 159 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV G+SRG+GFV F++ ++A+ A+ +LNG + + K ++VG +K ER+
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK F
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q L
Sbjct: 338 GFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 388
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/402 (54%), Positives = 293/402 (72%), Gaps = 4/402 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALD 99
SLYVGDL+ SV + QL LF+Q+ V S VCRD++ R+SLGYGYVN+ + +ATRA++
Sbjct: 61 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 120
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFT +NGKPIR+M+S RDPT+RKSG N+FIKNL+ +IDNK+L++ FS+FG ILS KV
Sbjct: 121 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 180
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD G+S+GYGF+QF++E SAK AI+ LNGML N +++FVG F+R+QERE T D F
Sbjct: 181 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 240
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL + +++DL F FG ITS VMRDA+G S+CFGFVNF+ + A +V+ L
Sbjct: 241 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 300
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGK D YV +AQKK ER+ ELK KFE + +K + +NLY+KNLDD I+D+ L+
Sbjct: 301 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+LF FG + SCKVM D +G S+G GFV+F+T E+A+ A+ +MNGKMV KPLYVA+AQR
Sbjct: 361 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 420
Query: 400 KEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
KEER+A L A F+++R + P +AP Q +G G
Sbjct: 421 KEERKAFLAAHFARVRALATMAPTLGPNIAP---HQFNFGHG 459
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E +++L+++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/418 (54%), Positives = 297/418 (71%), Gaps = 16/418 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL +V++ QL+ LF+Q+ V +VRVCRD+ + SLGYGYVN+ + EATRAL+
Sbjct: 2 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFTPL GK IR+M+S RDP++RKSG N+F+KNL+ +ID+K L++ FS+FG ILSCKV
Sbjct: 62 ALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATDS GQS+GYGFVQ++ EESA++AI+ LNGML N++++FVG +R+++RE +F
Sbjct: 122 ATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDRE-----VKFT 176
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVY+KNL +EDDL++ F FG ITS VMRDADG SKCFGFVNF P+ A +VE
Sbjct: 177 NVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKA 236
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGK DK YVG+AQKK ER+ ELK +F + DK G+NLY+KN+DD I+D+ LK
Sbjct: 237 NGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 296
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+LF EFG + SCKVM D G S+GSGFV+F+TAE +A+ MNG++V KPLYV LAQ
Sbjct: 297 KLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQP 356
Query: 400 KEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGP---PIIPPQ-VIYSF 453
KEER+A L A F+Q + P QQ+++G PI PPQ ++ F
Sbjct: 357 KEERKAMLMAHFAQRNLAMAASQYAGP-------QQVYFGHPSSPGPIAPPQGAVFGF 407
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 17/193 (8%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ T++Y+ +L ++ L F G++ S V RD + S +G+VN+ A
Sbjct: 171 REVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRD-ADGASKCFGFVNFKKPEFA 229
Query: 95 TRALDELNFTPLNGKPIRIMYSY----------------RDPTIRKSGAGNIFIKNLDKS 138
A+++ N + K + + + RD + K N+++KN+D
Sbjct: 230 IEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDG 289
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
I+++ L F FG + SCKV D+ G+S+G GFV F E+ + AI+++NG ++ K +
Sbjct: 290 INDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPL 349
Query: 199 FVGPFLRKQERES 211
+VG K+ER++
Sbjct: 350 YVGLAQPKEERKA 362
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/376 (55%), Positives = 285/376 (75%), Gaps = 2/376 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LFN +G V S+RVCRD TRRSLGY YVN++ + +A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP++RK G GN+FIKNLD +IDNKALHDTFS FG ILSC
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D LG ++GYGFV FD+ ESA +AI+ +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 257
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KNL TE + +FG+FG ITS ++++D + K + FGFVN+ + + A ++
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K++ K+ YVG+AQKK+ERE EL+ ++EQ E +K++G+NL++KNL D + D
Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LK FS FGTITS K+M D G S+G GFV ++T EEA+KA+TEMN +M+ KPLYVA
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 396 LAQRKEERRARLQAQF 411
LAQRKE RR++L+AQ
Sbjct: 438 LAQRKEVRRSQLEAQI 453
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/377 (58%), Positives = 289/377 (76%), Gaps = 4/377 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSC+V
Sbjct: 71 TMNFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR- 217
A D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K +
Sbjct: 131 AQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELGEKAKL 190
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DP+ A R+V
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVA 250
Query: 278 ALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D+
Sbjct: 251 DLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDE 310
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L++ F+ FGTITS KVM + +G S+G GFV FS AEEA+KA+TEMNG++V SKPLYVAL
Sbjct: 311 RLRKEFAPFGTITSVKVMME-DGRSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVAL 369
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+R+A L +Q+ Q
Sbjct: 370 AQRKEDRKAHLASQYLQ 386
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D++ + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + ++ NV++KNL + + F FG I
Sbjct: 71 TMNFDIIKGRPIRI----MWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + ++DDKLKE+F ++GTITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF A +A+ ++NGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLK 286
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/405 (55%), Positives = 295/405 (72%), Gaps = 9/405 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ----MRP-PVGPRMPMYPPVAPG 431
LYVALAQRKEER+A L Q+ Q MR P + + P A G
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG 407
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSID KAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRVVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK+IF ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L +Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTSQYMQ 384
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNK L+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 22 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 81
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 82 AERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 141
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 142 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 200
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +D
Sbjct: 201 GAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHED 260
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 261 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 320
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 321 TIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 379
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 380 LYVALAQRKEERKAHLTNQYMQ 401
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/418 (54%), Positives = 298/418 (71%), Gaps = 14/418 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A F S+SLYVGDL V DSQL+++FNQ+G V ++R+CRD +TRRSL Y YVNY+ +
Sbjct: 2 AASFSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPAD 61
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD LN T + GK RIM+S RDP++RKSG GNIFIKNLDKS+D+KAL DTFS FGN
Sbjct: 62 AERALDTLNNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGN 121
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKV TD S+G+GFV +++++SA AI K+NGM++ND++VFVGPF +ER T
Sbjct: 122 ILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERGQTQ 181
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+ ++ NVYVKNLSE E++L+ + +G IT+ +M D KSK FGF NF+ PD+A
Sbjct: 182 E-LKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAK 240
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
VEA NGK F K YVG+AQKK ERE ELK KFE K++G+NLY+KN+DDSI
Sbjct: 241 NCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFE-------TKYQGVNLYIKNIDDSI 293
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
DKL+ F+ +GTITS KVMRD S+G GFV ++T +EASKA+ EM+G+MV +KPL
Sbjct: 294 DSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPL 353
Query: 393 YVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVI 450
YVA AQRKE RR L+AQ ++ + G R+ P + G +FY QG P++ PQ++
Sbjct: 354 YVAFAQRKEIRRQHLEAQHNKFK---GNRIQPVPSMY--AGGPMFYNQGMPVVYPQMM 406
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 106/204 (51%), Gaps = 15/204 (7%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ T++YV +L VN+ +L DL G++ ++ + D + +S G+G+ N+
Sbjct: 178 GQTQELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKS-KSKGFGFANFETP 236
Query: 92 HEATRALDELNFTPLNGKPIRIMYSY----RDPTIR-----KSGAGNIFIKNLDKSIDNK 142
EA ++ N +GK I + + R+ ++ K N++IKN+D SID+
Sbjct: 237 DEAKNCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFETKYQGVNLYIKNIDDSIDSD 296
Query: 143 ALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
L TF+ +G I S KV D S+G+GFV + + A A+ +++G ++ +K ++V
Sbjct: 297 KLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVA 356
Query: 202 ----PFLRKQERESTADKTRFNNV 221
+R+Q E+ +K + N +
Sbjct: 357 FAQRKEIRRQHLEAQHNKFKGNRI 380
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 285/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/376 (58%), Positives = 291/376 (77%), Gaps = 4/376 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ L++ F+ G V+S+RVCRDL TRRSLGY YVN+ +A RALD
Sbjct: 12 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++RKSG GNIFIKNLDK+IDNKAL+DTFS FGNILSCK+
Sbjct: 72 TMNFDAIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKI 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKT-R 217
A D G S GYGFV F+ EE+A+++I+K+NGMLLN K+VFVG F+ ++ER E DK +
Sbjct: 132 AMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKK 190
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKNL+ET + L+++F FG I S +M +G+ + FGFV+FDD + AA++VE
Sbjct: 191 FTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVE 250
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LN K+ + KE YVG+AQKK ER+ ELK KFE+ E ++++G+NLYVKNLD+ I D++
Sbjct: 251 ELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDER 310
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+FGTITS +VM + G ++G GFV FS+ EEA+KA+TEMNG++VV+KPLYVALA
Sbjct: 311 LRKEFSQFGTITSARVMTE-GGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALA 369
Query: 398 QRKEERRARLQAQFSQ 413
QRKE+R+A L AQ+ Q
Sbjct: 370 QRKEDRKAHLAAQYMQ 385
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 173/301 (57%), Gaps = 21/301 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ LYD F+ G ++S ++ D + SLGYG+V++ A ++++
Sbjct: 101 NIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG--SLGYGFVHFETEEAARNSIEK 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R + G N+++KNL++++D+K L + F FG I
Sbjct: 159 VNGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFGKI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
+S K+ GQ RG+GFV FD+ E+A A+++LN + K+++VG +K ER++
Sbjct: 219 ISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELK 278
Query: 215 KT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ R N N+YVKNL E ++ L+K F +FG ITS VM + G++K FG
Sbjct: 279 EKFERMKMERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEG-GRTKGFG 337
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q + + +G+
Sbjct: 338 FVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLAAQYMQRIAGMRMQGQGV 397
Query: 323 N 323
N
Sbjct: 398 N 398
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 159/288 (55%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L + FST G +LS +V D + + S GY +V F A+ A+D
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 72
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + + + +R+ + K+ N+++KNL + L F FG I S
Sbjct: 73 MNFDAIKGRPIRI----MWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILS 128
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ D +G S +GFV+F+ + A S+E +NG + K+ +VG+ + ER +E+ G
Sbjct: 129 CKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKER-LEMLG- 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+ A KF N+YVKNL++++ D KL+E+F FG I S K+M G RG GFV
Sbjct: 186 ------DKAKKF--TNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFV 237
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F E A+KA+ E+N K V K +YV AQ+K ER+A L+ +F +M+
Sbjct: 238 SFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMK 285
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+Q G + S RV + R+ G+G+V +++ EAT
Sbjct: 291 RYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGG--RTKGFGFVCFSSPEEAT 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 349 KAVTEMNGRIVVAKPLYVALAQR 371
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/399 (56%), Positives = 293/399 (73%), Gaps = 9/399 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 122 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E +D+LK++F +FG S VMRD GKSK FGFV+++ +DA ++VE
Sbjct: 181 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 240
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+K
Sbjct: 241 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 300
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 301 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 359
Query: 398 QRKEERRARLQAQFSQ----MRP-PVGPRMPMYPPVAPG 431
QRKEER+A L Q+ Q MR P + + P A G
Sbjct: 360 QRKEERKAHLTNQYMQRVAGMRALPANAILSQFQPAAGG 398
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S +S G+G+V+Y +
Sbjct: 178 AKEF--TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHED 234
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 235 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 294
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 295 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 353
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 354 LYVALAQRKEER-----KAHLTNQYMQRVA 378
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/431 (54%), Positives = 312/431 (72%), Gaps = 28/431 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD V ++QL+++F+Q+G V S+RVCRD TRRSLGY YVNYN+A +A A
Sbjct: 23 NSSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAAAAE 82
Query: 99 DE---LNFTPL--------NGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
LN+T + + KP+RIM+S+RDP RKSG GNIFIKNLDK IDNKALHDT
Sbjct: 83 RAIEALNYTSVIPGKEGGEDSKPMRIMWSHRDPAFRKSGVGNIFIKNLDKDIDNKALHDT 142
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
F+ FG ILSCKVATD G S+GYGFV ++ EE+A+ AI+K+NGMLL K+VFVGPFL++
Sbjct: 143 FTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGPFLKRT 202
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
ER ++ + NV+VKNLSE T+++++K+F E G++TS A+M+D GKSK FGF+NF+
Sbjct: 203 ERPVDKEQ-HYTNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFE 261
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
D + A +V ALNGK+ D KE Y G+AQKK ERE ELK KF++ +E K++G+NLYVK
Sbjct: 262 DAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVK 321
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NL D + DD+L+ F+ GTITS KVM+D G S+G GFV +S+ EEA++A+TEMNGKM+
Sbjct: 322 NLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNGKML 381
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQMR-PPVGPR--------MP-MYPPVAPGLGQQLF 437
+ KP+YVALAQR+E RR +L+ Q++Q R P+ R MP ++PP A QQ F
Sbjct: 382 LGKPMYVALAQRREVRRQQLEQQYTQQRVAPMSGRPNAPGPVPMPGVFPPNAVSFPQQYF 441
Query: 438 ------YGQGP 442
YG GP
Sbjct: 442 APPTNAYGPGP 452
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +L V+D QL F G + S +V +D S +S G+G+V Y++ EAT
Sbjct: 312 KYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKD-SAGKSKGFGFVCYSSPEEAT 370
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N L GKP+ + + R
Sbjct: 371 RAVTEMNGKMLLGKPMYVALAQR 393
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/383 (57%), Positives = 289/383 (75%), Gaps = 4/383 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRDL TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLD+SIDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E TE+ L+ +F ++G ITS +M DGKSK FGFV F+ P+
Sbjct: 185 GEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEA 244
Query: 272 AARSVEALNGKK-FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A +VEALNGK+ D K YVG+AQKK ER+ ELK +FE E ++++G+NLYVKNLD
Sbjct: 245 AETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D+I D++L++ FS FGTITS KVM + N S+G GFV FS+ EEA+KA+TEMNG++V SK
Sbjct: 305 DTIDDERLRKEFSPFGTITSAKVMMEDNR-SKGFGFVCFSSPEEATKAVTEMNGRIVGSK 363
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 PLYVALAQRKEDRKAHLTSQYMQ 386
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/423 (52%), Positives = 297/423 (70%), Gaps = 16/423 (3%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LFN +G V S+RVCRD TRRSLGY YVN++ + +A
Sbjct: 64 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 123
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP++RK G GN+FIKNLD +IDNKALHDTFS FG ILSC
Sbjct: 124 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 183
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D LG ++GYGFV FD+ ESA +AI+ +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 184 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 243
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KNL TE + +FG+FG ITS ++++D + K + FGFVN+ + + A ++
Sbjct: 244 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 303
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K++ K+ YVG+AQKK+ERE EL+ +EQ E +K++G+NL++KNL D + D
Sbjct: 304 VDELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDD 363
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LK FS FGTITS K+M D G S+G GFV ++T EEA+KA+TEMN +M+ KPLYVA
Sbjct: 364 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 423
Query: 396 LAQRKEERRARLQAQF---------SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 446
LAQRKE RR++L+AQ Q+ G P V G L YG G IP
Sbjct: 424 LAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAG-----IPAVQYGATGPLIYGPGGYPIP 478
Query: 447 PQV 449
V
Sbjct: 479 AAV 481
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/409 (51%), Positives = 297/409 (72%), Gaps = 4/409 (0%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
QP AA P P G A + A S SLYVG+LD +V +S L+++FN +G V
Sbjct: 11 QPVPEQVAAAAPPPL--GYAASAPTHGANTATSASLYVGELDPTVTESMLFEIFNMIGPV 68
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD TRRSLGY YVNY A + RAL++LN++ + +P RIM+S RDP +RK+G
Sbjct: 69 ASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSSIKNRPCRIMWSQRDPALRKTG 128
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKVATD G S+GYGFV ++ E+A++AI
Sbjct: 129 QGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIK 188
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLNDK+V+VGP + ++ER+S D+ R F N+YVKN+ T+++ + +F ++G
Sbjct: 189 SVNGMLLNDKKVYVGPHISRKERQSKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQ 248
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
+ S+ + RD G++ FGFVNF+ ++A ++V+AL+ F ++ YV +AQKK ERE EL
Sbjct: 249 VQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYVARAQKKAEREAEL 308
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ +++Q+ +E +K++G+NLY+KNL+D + D+KL+ F FGTITSC+VMRD G S+G
Sbjct: 309 RKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRDERGKSKGF 368
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
GFV +S +EA+KA+ EMN KM+ SKPLYV+LAQRKE RR +L++Q +Q
Sbjct: 369 GFVCYSAPDEATKAVAEMNNKMIGSKPLYVSLAQRKEIRRQQLESQIAQ 417
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/402 (54%), Positives = 292/402 (72%), Gaps = 4/402 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALD 99
SLYVGDL+ SV + QL LF+Q+ V S VCRD++ +SLGYGYVN+ + +ATRA++
Sbjct: 62 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAME 121
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNFT +NGKPIR+M+S RDPT+RKSG N+FIKNL+ +IDNK+L++ FS+FG ILS KV
Sbjct: 122 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 181
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
ATD G+S+GYGF+QF++E SAK AI+ LNGML N +++FVG F+R+QERE T D F
Sbjct: 182 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 241
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL + +++DL F FG ITS VMRDA+G S+CFGFVNF+ + A +V+ L
Sbjct: 242 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 301
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NGK D YV +AQKK ER+ ELK KFE + +K + +NLY+KNLDD I+D+ L+
Sbjct: 302 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+LF FG + SCKVM D +G S+G GFV+F+T E+A+ A+ +MNGKMV KPLYVA+AQR
Sbjct: 362 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 421
Query: 400 KEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
KEER+A L A F+++R + P +AP Q +G G
Sbjct: 422 KEERKAFLAAHFARVRALATMAPTLGPNIAP---HQFNFGHG 460
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/403 (55%), Positives = 294/403 (72%), Gaps = 8/403 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q +R P + Y P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPP 405
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/397 (56%), Positives = 292/397 (73%), Gaps = 8/397 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
QRKEER+A L Q+ Q +R P + Y P P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPP 405
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + + SLYVGDL V+++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RAL+ +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL DTFS FGN
Sbjct: 65 AERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ ++A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E + LK++FG+FG S VM D G SK FGFVNF+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G ++G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRNKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LY+ALAQRKEER+A L Q+ Q
Sbjct: 363 LYIALAQRKEERQAHLTNQYMQ 384
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 285/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+ VCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/404 (53%), Positives = 298/404 (73%), Gaps = 6/404 (1%)
Query: 17 QPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS 76
+ +PA+ + + GD STSLYVG+LD SV+++ LYDLF+ +G V S+RVCRD
Sbjct: 25 EATPASTASSESQQAGD-NDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAI 83
Query: 77 TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
T+ SLGY YVN++ +A+++LN+TP+ GK RIM+S RDP++RK G GNIFIKNL+
Sbjct: 84 TKTSLGYAYVNFSDHEAGKQAIEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLN 143
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ IDNKAL DTFS FGNILS K+ATD G+S+G+GFV F+ E +A AID LNGMLLN +
Sbjct: 144 QDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQ 203
Query: 197 QVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
+++V P L ++ER+S ++T+ F NVYVKN+ TT+++ K+ FG+ G +TS A+ R
Sbjct: 204 EIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGP 263
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKE 314
DGK K FGFVN++D +DA ++VE LNG +F D+E +VG+AQKKYER LK ++E + E
Sbjct: 264 DGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLE 323
Query: 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374
K++G+NL+VKNLDDSI D+KL+E F+ FG ITS KVMR NG S+G GFV FS+ EE
Sbjct: 324 KMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEE 383
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
A+KA+TE N ++V KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 384 ATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 427
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/421 (52%), Positives = 307/421 (72%), Gaps = 15/421 (3%)
Query: 1 MAQVQVQPQAPVAVAAQPSPATNGI-ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDL 59
+ ++ +Q + P A +PAT I A + V + V+ SLYVG+LD SV+++ LYD+
Sbjct: 12 LEKLNIQDEQPAA-----TPATTAIEAESPNVEN----VTASLYVGELDPSVSEALLYDI 62
Query: 60 FNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119
F+ +G V S+RVCRD T+ SLGY YVN+N A+++LN+T + G+P RIM+S RD
Sbjct: 63 FSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYTAIKGRPCRIMWSQRD 122
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
P++RK G+GNIFIKNL IDNK L++TFS FGNILSCK+A D G+S+G+GFV F+NEE
Sbjct: 123 PSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEE 182
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKK 237
+A+ AID +NGMLLN ++V+V P + K++R+S D+ R F NVYVKNL TE+D +
Sbjct: 183 AAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFEN 242
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
+F +G ITS A+ +DA+GKS+ FGFV+F++ +DA ++VEALN ++ + YVG+AQKK
Sbjct: 243 LFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKK 302
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
YER ELK +++ S E K++G+NL++KNLDDSI D+KLKE F+ FGTITS +VMR
Sbjct: 303 YERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTE 362
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQM 414
NG S+G GFV FST EEA++A+TE N ++V KPLYVA+AQRK+ RR++L Q +QM
Sbjct: 363 NGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQM 422
Query: 415 R 415
R
Sbjct: 423 R 423
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/399 (55%), Positives = 291/399 (72%), Gaps = 4/399 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++FG++G S VM D +GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ F FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q V P+ P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP 401
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/375 (57%), Positives = 284/375 (75%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G +VS+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ ++A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK+IF +FG TS VM D G + FGFV+F++ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + +VG+AQKK ER+MELK +FEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERQAHLITQYMQ 384
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/399 (55%), Positives = 291/399 (72%), Gaps = 4/399 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++FG++G S VM D +GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ F FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q V P+ P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP 401
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/399 (55%), Positives = 290/399 (72%), Gaps = 4/399 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK+ FG++G S VM D GKS+ FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ F+ FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q V P+ P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP 401
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/428 (53%), Positives = 299/428 (69%), Gaps = 29/428 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+++F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 440
RKEER+A L Q+ Q MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 441 GPPIIPPQ 448
G P+ P Q
Sbjct: 424 G-PVTPTQ 430
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L +LF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/516 (47%), Positives = 321/516 (62%), Gaps = 81/516 (15%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNG----IANNGGVGDARQFV----------STSLYVGDL 47
A+ P A P ATNG IA + G+A Q S SLYVG+L
Sbjct: 3 AETATNPPVDTTPGAAPESATNGSNANIAADTTAGEASQTTSSTTPTAQPHSASLYVGEL 62
Query: 48 DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107
D SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T +
Sbjct: 63 DPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIK 122
Query: 108 GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS 167
G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S
Sbjct: 123 GRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS 182
Query: 168 RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKN 225
+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K F NVYVKN
Sbjct: 183 KGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKN 242
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKF 284
+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +VEALN K F
Sbjct: 243 IDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS
Sbjct: 303 KGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSS 362
Query: 345 FGTITSCKVMRD------------------------------------------------ 356
+GTITS KVMRD
Sbjct: 363 YGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESK 422
Query: 357 -----PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 423 KSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASI 482
Query: 412 SQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
Q R + P+ M P V G GQQ F
Sbjct: 483 -QARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF 517
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/376 (58%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ 413
QRKEER+A L Q+ Q
Sbjct: 369 QRKEERQAHLTNQYMQ 384
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 165/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K V + +R+ + K+ N+++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ + E N+Y+KN + + D++LK+LF +FG S KVM D +G S+G GF
Sbjct: 186 RAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/422 (54%), Positives = 297/422 (70%), Gaps = 17/422 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 447 PQ 448
Q
Sbjct: 429 TQ 430
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/428 (53%), Positives = 298/428 (69%), Gaps = 29/428 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 440
RKEER+A L Q+ Q MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 441 GPPIIPPQ 448
G P+ P Q
Sbjct: 424 G-PVTPTQ 430
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/386 (56%), Positives = 286/386 (74%), Gaps = 8/386 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG----NIFIKNLDKSIDNKALHDTFS 149
A RAL+ LNF + G+P+RIM+S RDP++RKSG G NIFIKNLDKSIDNKAL+DTFS
Sbjct: 65 AKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFS 124
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ER
Sbjct: 125 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 183
Query: 210 EST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
E+ A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+
Sbjct: 184 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFE 243
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVK
Sbjct: 244 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 303
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 304 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 362
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQ 413
+KPLYVALAQRKEER+A L Q+ Q
Sbjct: 363 ATKPLYVALAQRKEERQAHLTNQYMQ 388
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/516 (47%), Positives = 321/516 (62%), Gaps = 81/516 (15%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNG----IANNGGVGDARQFV----------STSLYVGDL 47
A+ P A P ATNG +A + G+A Q S SLYVG+L
Sbjct: 3 AETATNPPVDTTPGAAPESATNGSNANVAADTTAGEASQTTSSTTPTAQPHSASLYVGEL 62
Query: 48 DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107
D SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T +
Sbjct: 63 DPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIK 122
Query: 108 GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS 167
G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S
Sbjct: 123 GRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS 182
Query: 168 RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKN 225
+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K F NVYVKN
Sbjct: 183 KGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKN 242
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKF 284
+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +VEALN K F
Sbjct: 243 IDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS
Sbjct: 303 KGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSS 362
Query: 345 FGTITSCKVMRD------------------------------------------------ 356
+GTITS KVMRD
Sbjct: 363 YGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESK 422
Query: 357 -----PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 423 KSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASI 482
Query: 412 SQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
Q R + P+ M P V G GQQ F
Sbjct: 483 -QARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF 517
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/403 (54%), Positives = 293/403 (72%), Gaps = 8/403 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG +G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + ++ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q +R P + Y P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPP 405
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/516 (47%), Positives = 321/516 (62%), Gaps = 81/516 (15%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNG----IANNGGVGDARQFV----------STSLYVGDL 47
A+ P A P ATNG +A + G+A Q S SLYVG+L
Sbjct: 3 AETATNPPVDTTPGAAPESATNGSNANVAADTTAGEASQTTSSTTPTAQPHSASLYVGEL 62
Query: 48 DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107
D SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T +
Sbjct: 63 DPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIK 122
Query: 108 GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS 167
G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S
Sbjct: 123 GRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS 182
Query: 168 RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKN 225
+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K F NVYVKN
Sbjct: 183 KGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKN 242
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKF 284
+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +VEALN K F
Sbjct: 243 IDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS
Sbjct: 303 KGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSS 362
Query: 345 FGTITSCKVMRD------------------------------------------------ 356
+GTITS KVMRD
Sbjct: 363 YGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESK 422
Query: 357 -----PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 423 KSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASI 482
Query: 412 SQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
Q R + P+ M P V G GQQ F
Sbjct: 483 -QARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF 517
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 294/410 (71%), Gaps = 13/410 (3%)
Query: 6 VQPQAPVAVAAQPS-PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
VQP APV + S P +G + S SLYVG+LD +V ++ L+++FN +G
Sbjct: 31 VQPPAPVHASMPYSVPPASGASTP----------SASLYVGELDSTVTEAMLFEIFNMIG 80
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
V S+RVCRD TRRSLGY YVNY A + RAL++LN++ + + RIM+S RDP +RK
Sbjct: 81 PVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKNRACRIMWSQRDPALRK 140
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
+G GNIFIKNLD+ ID+KALHDTF+ FGN+LSCKVATD G+SRG+GFV +D E+A +A
Sbjct: 141 TGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTA 200
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEF 242
I +NGMLLNDK+VFVG ++ K+ER++ D K++F N+YVKNL T+D+ +F +F
Sbjct: 201 IKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKF 260
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G +TS V +D +GKSK FGFVNF D + A +V+AL+ + + K+ +V +AQKK ERE
Sbjct: 261 GEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQKKAEREE 320
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ +EQ+ E K++G NLY+KNL+D + DDKL+ F FGTITSCK+MRD G S+
Sbjct: 321 ELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTSK 380
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412
G GFV +S+ EEA+KA+ EMN KM+ SKPLYV+ AQR+E RR +L++Q +
Sbjct: 381 GFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQLESQIA 430
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/403 (54%), Positives = 292/403 (72%), Gaps = 8/403 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 AASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + E+ L+ +F ++G S VM D GKS+ FGFV+F+ +D
Sbjct: 184 GARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q +R P + Y P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPP 405
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/411 (51%), Positives = 296/411 (72%), Gaps = 6/411 (1%)
Query: 6 VQPQAPVAVAAQPSPATN-GIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
VQP+A ++ P+P + + + A S SLYVG+LD +V ++ ++++FN +G
Sbjct: 13 VQPEAASVPSSAPAPTPSYNLPPQTSISSA---PSASLYVGELDPTVTEAMIFEIFNMIG 69
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
V S+RVCRD TRRSLGY YVNY + RAL++LN++ + G+P RIM+S RDP +RK
Sbjct: 70 PVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQLNYSLIKGRPCRIMWSQRDPALRK 129
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
+G GNIFIKNLD+ IDNKALHDTF FGN+LSCKVATD G+S+GYGFV ++ E+A++A
Sbjct: 130 TGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETA 189
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEF 242
I +NGMLLNDK+V+VGP + ++ER+S D K +F N+Y+KNL T+++ +++F +
Sbjct: 190 IKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRY 249
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G +TS V D +G+SK FGFVN++ ++A +V+ L+ K+ YV +AQKK ERE
Sbjct: 250 GSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREE 309
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ +EQ+ E K++G+NLYVKNL+D + DDKL+ F FGTITSCKVM D G S+
Sbjct: 310 ELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSK 369
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
G GFV FS+ +EA+KA+ EMN KM+ SKPLYV+LAQR+E RR +L++Q +Q
Sbjct: 370 GFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQ 420
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/389 (56%), Positives = 283/389 (72%), Gaps = 8/389 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+N+ +A ALD
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + LK IF EFG S VM D G+S+ FGFVNF + DA R+V
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +GTITS KVM D G SRG GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMP 423
RKEER+A L Q+ Q +R GP +P
Sbjct: 370 RKEERKAILTNQYIQRLASIRAIPGPAIP 398
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/377 (58%), Positives = 289/377 (76%), Gaps = 5/377 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKV
Sbjct: 62 TMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR- 217
A D G S+GYGFV F+ EESA ++I+K+NGMLLN K+VFVG F+ ++ERE +K +
Sbjct: 122 AQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKL 181
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN + T++ LK++F ++G ITS VM + KS+ FGFV F++P+ A +V+
Sbjct: 182 FTNVYVKNFGDELTDESLKEMFEKYGTITSHRVM-IKENKSRGFGFVAFENPESAEVAVQ 240
Query: 278 ALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGK+ D K YVG+AQKK ER+MELK +FEQ E +++G+NLYVKNLDDSI D+
Sbjct: 241 ELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 300
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L++ FS FGTITS KVM + G S+G GFV FS AEEA+KA+TEMNG++V SKPLYVAL
Sbjct: 301 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVAL 359
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+R+A L +Q+ Q
Sbjct: 360 AQRKEDRKAHLASQYMQ 376
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 159/290 (54%), Gaps = 17/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N L+ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 62 TMNFDLIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A S+E +NG + K+ +VG+ + ERE EL
Sbjct: 118 SCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELG- 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN D ++D+ LKE+F ++GTITS +VM N SRG GF
Sbjct: 177 -------EKAKLF--TNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENK-SRGFGF 226
Query: 367 VAFSTAEEASKALTEMNGKMVV-SKPLYVALAQRKEERRARLQAQFSQMR 415
VAF E A A+ E+NGK + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 227 VAFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLK 276
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 163/291 (56%), Gaps = 22/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S GYG+V++ A ++++
Sbjct: 91 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-EKGNSKGYGFVHFETEESANTSIEK 149
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + R ++ G N+++KN + +++L + F +G I
Sbjct: 150 VNGMLLNAKKVFVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELTDESLKEMFEKYGTI 209
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV-FVGPFLRKQERESTA 213
S +V +SRG+GFV F+N ESA+ A+ +LNG L D +V +VG +K ER+
Sbjct: 210 TSHRVMIKE-NKSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMEL 268
Query: 214 DK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ TR+ N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK F
Sbjct: 269 KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLE-EGRSKGF 327
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F ++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 328 GFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 378
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L F+ G + S +V L RS G+G+V ++AA EAT
Sbjct: 282 RYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVCFSAAEEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 340 KAVTEMNGRIVGSKPLYVALAQR 362
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/403 (54%), Positives = 293/403 (72%), Gaps = 8/403 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + ++ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q +R P + Y P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPP 405
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/428 (53%), Positives = 298/428 (69%), Gaps = 29/428 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 440
RKEER+A L Q+ Q MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 441 GPPIIPPQ 448
G P+ P Q
Sbjct: 424 G-PVTPTQ 430
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/418 (53%), Positives = 305/418 (72%), Gaps = 13/418 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V +S LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD++G+S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQMRP--PV-----GPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
QRKEER+A L Q+ + RP PV P + P V Q ++Y G I P Q
Sbjct: 369 QRKEERKAILTNQYRR-RPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSG-SITPMQ 424
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L +V++ +L DLF+Q G + SV+V RD S +S G+G+VN+ E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI+++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDERLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 362 PLYVALAQRKEERKA 376
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/389 (56%), Positives = 283/389 (72%), Gaps = 8/389 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+N+ +A ALD
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + LK IF EFG S VM D G+S+ FGFVNF + DA R+V
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +GTITS KVM D G SRG GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMP 423
RKEER+A L Q+ Q +R GP +P
Sbjct: 370 RKEERKAILTNQYIQRLASIRAIPGPAIP 398
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/418 (53%), Positives = 305/418 (72%), Gaps = 13/418 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V +S LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD++G+S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQMRP--PV-----GPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
QRKEER+A L Q+ + RP PV P + P V Q ++Y G I P Q
Sbjct: 369 QRKEERKAILTNQYRR-RPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSG-SITPMQ 424
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L +V++ +L DLF+Q G + SV+V RD S +S G+G+VN+ E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI+++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDERLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 362 PLYVALAQRKEERKA 376
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/382 (56%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ L+++F ++G S VM D +GKS+ FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ + V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGQPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + + E N+Y+KN D + D+KL+ELFS++G S +VM D
Sbjct: 177 KEREAELGARAK----------EFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
NG SRG GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMK 284
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + FS +GN
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
+S +V TD G+SRG+GFV F+ E A+ A+D++NG +N K ++VG +K ER++
Sbjct: 218 MSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/377 (58%), Positives = 289/377 (76%), Gaps = 5/377 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKV
Sbjct: 62 TMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR- 217
A D G S+GYGFV F+ EESA ++I+K+NGMLLN K+V+VG F+ ++ERE +K +
Sbjct: 122 AQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL 181
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN + ++ LK++F ++G ITS VM DGKS+ FGFV F++P+ A +V+
Sbjct: 182 FTNVYVKNFGDELNDETLKEMFEKYGTITSHRVM-IKDGKSRGFGFVAFENPESAEHAVQ 240
Query: 278 ALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGK+ + K YVG+AQKK ER+MELK +FEQ E +++G+NLYVKNLDDSI D+
Sbjct: 241 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 300
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L++ FS FGTITS KVM + G S+G GFV FS AEEA+KA+TEMNG++V SKPLYVAL
Sbjct: 301 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVAL 359
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+R+A L +Q+ Q
Sbjct: 360 AQRKEDRKAHLASQYMQ 376
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 160/290 (55%), Gaps = 17/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N L+ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 62 TMNFDLIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A S+E +NG + K+ YVG+ + ERE EL
Sbjct: 118 SCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN D ++D+ LKE+F ++GTITS +VM +G SRG GF
Sbjct: 177 -------EKAKLF--TNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIK-DGKSRGFGF 226
Query: 367 VAFSTAEEASKALTEMNGK-MVVSKPLYVALAQRKEERRARLQAQFSQMR 415
VAF E A A+ E+NGK + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 227 VAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLK 276
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 165/291 (56%), Gaps = 22/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S GYG+V++ A ++++
Sbjct: 91 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-EKGNSKGYGFVHFETEESANTSIEK 149
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN ++++ L + F +G I
Sbjct: 150 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELNDETLKEMFEKYGTI 209
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S +V G+SRG+GFV F+N ESA+ A+ +LNG L + K ++VG +K ER+
Sbjct: 210 TSHRVMIKD-GKSRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMEL 268
Query: 214 DK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ TR+ N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK F
Sbjct: 269 KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLE-EGRSKGF 327
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F ++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 328 GFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 378
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L F+ G + S +V L RS G+G+V ++AA EAT
Sbjct: 282 RYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVCFSAAEEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 340 KAVTEMNGRIVGSKPLYVALAQR 362
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/382 (56%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ L+++F ++G S VM D +GKS+ FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ + V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGQPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + + E N+Y+KN D + D+KL+ELFS++G S +VM D
Sbjct: 177 KEREAELGARAK----------EFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
NG SRG GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMK 284
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + FS +GN
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
+S +V TD G+SRG+GFV F+ E A+ A+D++NG +N K ++VG +K ER++
Sbjct: 218 MSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/428 (53%), Positives = 298/428 (69%), Gaps = 29/428 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 440
RKEER+A L Q+ Q MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 441 GPPIIPPQ 448
G P+ P Q
Sbjct: 424 G-PVTPTQ 430
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/390 (56%), Positives = 289/390 (74%), Gaps = 10/390 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L+D F+ G V+S+RVCRDL TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLD+SIDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKVA D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+K + F NVYVKN E +E+ L+ +F +FG ITS VM DGKSK FGFV F+ P+
Sbjct: 185 GEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEA 244
Query: 272 AARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A +V+ALNGK+ + K YVG+AQKK ER+ ELK +FE E ++++G+NLYVKNLD
Sbjct: 245 AETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLD 304
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGI-------SRGSGFVAFSTAEEASKALTEMN 383
D+I D++L++ F+ FGTITS KVM + N S+G GFV FS+ EEA+KA+TEMN
Sbjct: 305 DTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 384 GKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
G++V SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 365 GRIVGSKPLYVALAQRKEDRKAHLTSQYMQ 394
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 162/290 (55%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L D FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N L+ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDLIRGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D +G SK +GFV+F+ + A +S+E +NG + K+ YVG+ + ERE EL
Sbjct: 127 SCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + +S+++L+ +F +FG ITS KVM +G S+G GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGF 236
Query: 367 VAFSTAEEASKALTEMNGK-MVVSKPLYVALAQRKEERRARLQAQFSQMR 415
VAF + E A A+ +NGK +V KPLYV AQ+K ER+ L+ +F ++
Sbjct: 237 VAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALK 286
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 166/299 (55%), Gaps = 29/299 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ +YD F+ G ++S +V +D S GYG+V++ A +++++
Sbjct: 100 NVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKSIEK 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L + F FG I
Sbjct: 159 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERESTA 213
S KV + G+S+G+GFV F++ E+A++A+D LNG L+ K ++VG +K ER+
Sbjct: 219 TSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQEL 278
Query: 214 DKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD----- 255
K RF N+YVKNL +T ++ L+K F FG ITS VM + +
Sbjct: 279 -KRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESF 337
Query: 256 --GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+SK FGFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 338 ITTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRM 396
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/428 (53%), Positives = 298/428 (69%), Gaps = 29/428 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 440
RKEER+A L Q+ Q MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 441 GPPIIPPQ 448
G P+ P Q
Sbjct: 424 G-PVTPTQ 430
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 31/228 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
K ++V RK+ER K N Y++ LS T + + G F
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRTLSN--PLLGSF 400
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/382 (57%), Positives = 284/382 (74%), Gaps = 7/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHED 240
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 300
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 301 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 359
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 360 LYVALAQRKEERQAHLTNQYMQ 381
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/422 (53%), Positives = 296/422 (70%), Gaps = 17/422 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 447 PQ 448
Q
Sbjct: 429 TQ 430
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/382 (57%), Positives = 284/382 (74%), Gaps = 7/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHED 240
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 300
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 301 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 359
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 360 LYVALAQRKEERQAHLTNQYMQ 381
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/382 (57%), Positives = 284/382 (74%), Gaps = 7/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHED 240
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 300
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 301 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 359
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 360 LYVALAQRKEERQAHLTNQYMQ 381
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/428 (54%), Positives = 302/428 (70%), Gaps = 15/428 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGD+ V ++ L+++FN +G V S+RVCRD TRRSLGY YVN++ +A R
Sbjct: 42 FHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAER 101
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NFT + G P RIM+S RDP++RKSG GNIF+KNLD SIDNKAL+DTFS FGNILS
Sbjct: 102 ALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILS 161
Query: 157 CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
CKVA + + G S+GYG+V ++ E+A AI K+NGML+ +VFVG F ++Q+R D
Sbjct: 162 CKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDRPDADDW 221
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG--KSKCFGFVNFDDPDDAA 273
T N YVKN+ T+ DL K F FG + S VM+D ++ FGFVN+++ D A
Sbjct: 222 T---NCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAH 278
Query: 274 RSVEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
++V+ALNGK + D E YVGKAQK+ ERE EL+ KFEQ E +K++G+NLYVKN
Sbjct: 279 KAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKN 338
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDD +SDD+L+E F+E GTITS +VMRDPNG SRG GFV FST EEA+KA+ EMNGK++
Sbjct: 339 LDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLIS 398
Query: 389 SKPLYVALAQRKEERRARLQAQFSQMRPP--VGPRMPMYPPVAPGLGQQLFYGQGPPIIP 446
KP+YVALAQRKE RRA+L+AQ +Q R VG MPM P G +FYGQ P +P
Sbjct: 399 GKPVYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQPPMYGAA-PMFYGQ-PGQLP 456
Query: 447 PQVIYSFL 454
PQ F+
Sbjct: 457 PQARQGFM 464
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/414 (55%), Positives = 295/414 (71%), Gaps = 16/414 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N+S L+D F+ G V+S+RVCRD+ +RRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ D G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L + FS +GTITS KVM D G S+G GFV F +A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPP 447
QRKEER+A L +Q+ MR G RM ++PP A G G P +PP
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRMQQLGQIFPPNAAG-------GFFVPTMPP 407
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/420 (53%), Positives = 297/420 (70%), Gaps = 17/420 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + +D L++IF FG S VM D +G+SK FGFVNF+ ++A ++V
Sbjct: 191 TNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR GP + + PP+ + FYG P++P
Sbjct: 370 RKEERKAILTNQYMQRLATMRALPGPLLGSFQTPSGYFLPPMPQPQTRAAFYGPS-PVVP 428
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--RSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/406 (52%), Positives = 288/406 (70%), Gaps = 12/406 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRDL TRRSLGY YVN+
Sbjct: 7 AANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGH 66
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF P+ G+P RIM+ RDP++RKSG GNIFIKNLDKSIDNK+L+DTFS FGN
Sbjct: 67 AEKALDTMNFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGN 126
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ES 211
ILSCK+A D LG +GYGFV F+ E++A AI +++GMLLNDK+VFVG ++ K+ER +
Sbjct: 127 ILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKM 186
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+F NVYVKN + ++ +K+I E G I S VM D +GKSK FGFV+F+ P++
Sbjct: 187 GTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEE 246
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V LNGK+ + + G+A+K+ ER E+K + E+ +E ++F+G+NLY+KNLDD
Sbjct: 247 AEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDD 306
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L+E FS +GTI+S KVM+D G S+G GFV FS+ EEA+KA+TEMNG++++SKP
Sbjct: 307 PIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKP 366
Query: 392 LYVALAQRKEERRARLQAQFSQ----------MRPPVGPRMPMYPP 427
LYVALAQR+EER+A+L AQ RP P+MP P
Sbjct: 367 LYVALAQRREERKAQLAAQHMHRISGLRMHQGQRPFFTPQMPQVRP 412
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/422 (53%), Positives = 296/422 (70%), Gaps = 17/422 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 447 PQ 448
Q
Sbjct: 429 TQ 430
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/403 (54%), Positives = 293/403 (72%), Gaps = 8/403 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + ++ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q +R P + Y P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPP 405
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/422 (53%), Positives = 296/422 (70%), Gaps = 17/422 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 447 PQ 448
Q
Sbjct: 429 TQ 430
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/382 (56%), Positives = 284/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/418 (53%), Positives = 305/418 (72%), Gaps = 13/418 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V +S LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD++G+S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQMRP--PV-----GPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
QRKEER+A L Q+ + RP PV P + P V Q ++Y G I P Q
Sbjct: 369 QRKEERKAILTNQYRR-RPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSG-SITPMQ 424
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L +V++ +L DLF+Q G + SV+V RD S +S G+G+VN+ E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI+++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDERLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 362 PLYVALAQRKEERKA 376
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/420 (53%), Positives = 295/420 (70%), Gaps = 16/420 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG++ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR GP + + P V Q +YG GPPI P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQAPYYGSGPPIQP 429
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ +L DLF+Q G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVVNMNGREVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/399 (54%), Positives = 290/399 (72%), Gaps = 4/399 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++FG++G S VM D +GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ + GK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ F FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q V P+ P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP 401
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/382 (56%), Positives = 284/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGAITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/417 (52%), Positives = 298/417 (71%), Gaps = 17/417 (4%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVG+LD SV +S L+++F+ +GQV ++RVCRD +++SLGY YVN+ + + +AL+
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
ELN+TP+ GK RIM+S RDP++R++G+GNIFIKNL +IDNK LHDTFS FG ILSCK+
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKI 166
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK--TR 217
ATD G S+G+GFV ++ ESAK+AI+ +NGMLLND +V+VGP L K++R+S +
Sbjct: 167 ATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIAN 226
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN++ ED L++ F FG I+S + +D GKS+ FGFVNF+ +DA ++VE
Sbjct: 227 FTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVE 286
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LN K D ++ YVG+AQKK ER LK ++E + +E +K++G NL+VKNLDDSI D K
Sbjct: 287 ELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAK 346
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E F +GTITS KVM D G S+G GFV +S+ EEA+KA+TEM+ +MV KPLYVALA
Sbjct: 347 LEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALA 406
Query: 398 QRKEERRARLQAQF---SQMRPPVGPRMPMYPPVAP-GLGQ---QLFYGQGPPIIPP 447
QRKE RR++L Q +QMR M A G+GQ +FYGQ P +PP
Sbjct: 407 QRKEVRRSQLSQQIQARNQMR--------MQQAAAQGGMGQFVAPMFYGQNPGFLPP 455
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/382 (56%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++FG++G S VM D GKSK FGFV+F+ ++
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEE 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/393 (52%), Positives = 288/393 (73%), Gaps = 6/393 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 45 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + +P RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCK
Sbjct: 105 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S D K
Sbjct: 165 VATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKA 224
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+Y+KN+ T+++ + +F E G +TS+ + RD +G+S+ FGFVN++ ++A ++V
Sbjct: 225 QFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAV 284
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K F ++ +V +AQKK ERE EL+ EQ+ E K++GLNLYVKNLDD + D+
Sbjct: 285 DNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDE 344
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FGTITS KVMRD G+S+G GFV +S+ EEASKA+ EMN KM+ SKPLYV+
Sbjct: 345 KLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSH 404
Query: 397 AQRKEERRARLQAQFSQ----MRPPVGPRMPMY 425
AQR+E RR +L++Q +Q M MP Y
Sbjct: 405 AQRREVRRQQLESQIAQRNQIMHQAAAGGMPGY 437
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/422 (53%), Positives = 299/422 (70%), Gaps = 17/422 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND +VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+++F +FG + S VMRD+ G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR P +G P P V GQ +YG + P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGSPFLGSFQQPTSYFLPAVPQPPGQAAYYGSS-SMPP 428
Query: 447 PQ 448
PQ
Sbjct: 429 PQ 430
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 131/263 (49%), Gaps = 35/263 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L V++ L +LF+Q G+++SV+V RD S+ S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRD-SSGHSRGFGFVNFETHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS--TAVM 251
K ++V RK+ER K N Y++ LS T G F TS +
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS--TMRALGSPFLGSFQQPTSYFLPAV 411
Query: 252 RDADGKSKCFGFVNFDDPDDAAR 274
G++ +G + P A R
Sbjct: 412 PQPPGQAAYYGSSSMPPPQPAPR 434
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/421 (53%), Positives = 296/421 (70%), Gaps = 16/421 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG I S VMRD G S+ FGFVNF+ +DA ++V
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQF----SQMR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ S MR P +G P P V Q +Y GPP+ P
Sbjct: 370 RKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQPPAQSPYYASGPPVQP 429
Query: 447 P 447
P
Sbjct: 430 P 430
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S S G+G+VN+ +
Sbjct: 185 ARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSG-HSRGFGFVNFEKHED 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVTDMNGKEVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L F+ +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFAPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYIQRLS 387
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/422 (53%), Positives = 295/422 (69%), Gaps = 17/422 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ER E A F
Sbjct: 132 CDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G+S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y +AQK+ ER+ ELK KFEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 447 PQ 448
Q
Sbjct: 429 TQ 430
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 31/218 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L V++ L DLF+Q G+++SV+V RD ++ RS +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-NSGRSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y+ R D R G N+++K
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID+ L FS +G I S KV T+ S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDDKLRKEFSPYGVITSAKVMTEG-SHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/414 (51%), Positives = 289/414 (69%), Gaps = 15/414 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL ++ LY F+++G V+S R+CRDL+TR SLGYGYVN+ +A RAL+
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN+ G+PIRIM+S RDP++RKSG GNIFIKNLDK+ID K L+DTFS G ILSCK+
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKI 120
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A D G S+GYGFV F+ EE A+ AI+K+NGM++ND+ V+VG F+ +R+S + K RFN
Sbjct: 121 AMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGKLRFN 180
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKN TT++ L+ +F EFG I S V ++ +GKSK FGFV F DPD A ++V +
Sbjct: 181 NIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVM 240
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKL 338
+GK+ + + Y +AQ+K ER+ ELK + E+ E K+ G+NLYVKNLDD+I D++L
Sbjct: 241 HGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERL 300
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE FS +G ITS KVM D NG S+G GFV F+ E+A++A+TEMN +V SKPLYVALAQ
Sbjct: 301 KEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQ 360
Query: 399 RKEERRARL----QAQFSQMRPPVGPRMPM----------YPPVAPGLGQQLFY 438
RKE+RRA+L Q + +Q R PV +P +PP A Q+ ++
Sbjct: 361 RKEDRRAKLIAEHQQRLAQYRSPVTQMLPAAAAHAAAPSYFPPTAFPQAQRYYH 414
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/447 (50%), Positives = 311/447 (69%), Gaps = 13/447 (2%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVST--SLYVGDLDLSVNDSQLYDLFNQMGQV 66
++P + +PAT+ A + Q T SLYVG+LD +V +S LY+ F+ +G V
Sbjct: 19 ESPATAVTEETPATSTEAAEESNESSTQASETLASLYVGELDPTVTESDLYEFFSPIGSV 78
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD T+RSLGYGYVN+++ RAL+ELN+ + G R+M+S RDP++R+SG
Sbjct: 79 NSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEELNYAEIKGVRCRLMWSQRDPSLRRSG 138
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+GNIFIKNLD +I+NK LHDTFS+FG +LSCKVATD G S+G+GFV ++++E+A++AI+
Sbjct: 139 SGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIE 198
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLN ++++VGP L K++RES + + NV+VKN +TED+L+++F +G
Sbjct: 199 NINGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGP 258
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS + D++G +K FGFVNF + DDA ++VEALN K++ K YVG+AQKK ER EL
Sbjct: 259 ITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHEL 318
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K+E E K++ +NL++KNLD+SI D +L+E F FGTITS KVM D NG SRG
Sbjct: 319 TKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKSRGF 378
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPM 424
GFV ST EEA+KA++EMN +MV +KPLYVALAQ K RR++L AQ Q R +M M
Sbjct: 379 GFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQL-AQQIQAR----NQMRM 433
Query: 425 YPPVAPGLGQQ----LFYGQGPPIIPP 447
PG+ Q +FYGQ P ++PP
Sbjct: 434 QQQAGPGIPNQFVQPIFYGQQPGMLPP 460
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/375 (54%), Positives = 283/375 (75%), Gaps = 2/375 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RALD+
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN++ + + RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKVA
Sbjct: 108 LNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVA 167
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G S+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + ++ER+S D K ++
Sbjct: 168 TDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQY 227
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL ++ +++FG+FG ITS A+ +D +GKS+ FGFVNF+ + AA +VE
Sbjct: 228 TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVET 287
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
L+ + + ++ YV +AQKK ERE EL+ +E + +E K++G+NLY+KNL+D I D+KL
Sbjct: 288 LHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKL 347
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ F FGTITSCKVMRD S+G GFV FS+ +EA+KA++EMN KM+ SKPLYV+LAQ
Sbjct: 348 RAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQ 407
Query: 399 RKEERRARLQAQFSQ 413
R+E RR +L+ Q +Q
Sbjct: 408 RREVRRQQLETQIAQ 422
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 152/291 (52%), Gaps = 21/291 (7%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ LD S+ L + F+ G + S +V D++ + S GY +V + N + A+D+
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN L+ ++ + +R+ KT N+++KNL E L F FG + S
Sbjct: 108 LNYSLIKNRACRI----MWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLS 163
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM---EL 304
V D G SK +GFV+++ + A +++++NG +DK+ +VG + ER+ E+
Sbjct: 164 CKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEM 223
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K ++ N+YVKNLD + + +ELF +FG ITS + +D G SRG
Sbjct: 224 KAQY-------------TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGF 270
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
GFV F + E+A+ A+ ++ + + LYVA AQ+K ER L+ + +
Sbjct: 271 GFVNFESHEQAAAAVETLHDTEINGRKLYVARAQKKSEREDELRKSYENAK 321
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/382 (56%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D+ GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ +EA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + FS +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TDS G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 218 LSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F PD+A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K + E N+Y+KN D + D++LKELFS++G S KVM D +G S+G GF
Sbjct: 186 KAK----------EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A+KA+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/420 (53%), Positives = 295/420 (70%), Gaps = 16/420 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG++ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR GP + + P V Q +YG GPPI P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPVLGSFQQPASYFLPAVPQPPAQAQYYGSGPPIQP 429
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ +L DLF+Q G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVVNMNGREVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 304/416 (73%), Gaps = 12/416 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ +G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+P+RIM+S RDP++RKSG GN+FIKNLD+SIDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDILKGRPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D GQS+GYGFV F+ E+SA +I+K+NGMLLN K+VFVG F+ +++RE + +
Sbjct: 123 QDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLY 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN+ E + +L ++F ++G ITS VM DG S+ FGFV F+DP++A ++V
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+GK+ + K +YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D++
Sbjct: 243 LHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM D +G S+G GFV FS+ EEA+KA+T+MNG++V +KPLYVALA
Sbjct: 303 LRKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVALA 361
Query: 398 QRKEERRARLQAQFSQMRPPVGPRMPMYPPV-APGLGQQLFYGQGPPIIP-PQVIY 451
QRKE+R+A L +Q+ Q + RM P+ PG F P IP PQ Y
Sbjct: 362 QRKEDRKAHLDSQYLQRNTNM--RMQSIGPIYQPGASSGYFV----PTIPQPQRFY 411
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 106/194 (54%), Gaps = 23/194 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRAL 98
T++Y+ ++D +VND +L+++F + G + S +V RD + R G+G+V + EA +A+
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSR--GFGFVAFEDPEEAEKAV 240
Query: 99 DELNF--TPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
EL+ +P GK R Y+ + + N+++KNLD +ID
Sbjct: 241 TELHGKESP-EGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTID 299
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
++ L FS FG I S KV D G+S+G+GFV F + E A A+ +NG ++ K ++V
Sbjct: 300 DERLRKEFSVFGTITSAKVMMDD-GRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYV 358
Query: 201 GPFLRKQERESTAD 214
RK++R++ D
Sbjct: 359 ALAQRKEDRKAHLD 372
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F+ G + S +V D RS G+G+V +++ EAT
Sbjct: 283 RYQGVNLYVKNLDDTIDDERLRKEFSVFGTITSAKVMMDDG--RSKGFGFVCFSSPEEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ ++N + KP+ + + R
Sbjct: 341 KAVTDMNGRIVGTKPLYVALAQR 363
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/376 (57%), Positives = 284/376 (75%), Gaps = 4/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL DTFS FGNILSCKVA
Sbjct: 63 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K V+VG F+ ++ERE +K + F
Sbjct: 123 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E +++ LK +F ++G ITS VM DG S+ FGFV F+DPD A R+
Sbjct: 183 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDD+I D++
Sbjct: 243 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 303 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Query: 398 QRKEERRARLQAQFSQ 413
QRKE+R+A L +Q+ Q
Sbjct: 362 QRKEDRKAHLTSQYMQ 377
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 21/190 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRAL 98
T++YV + +D L D+F + G++ S +V +D R G+G+V + A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR--GFGFVAFEDPDAAERAC 240
Query: 99 DELNFTPL-NGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
ELN L GKP+ R + + + N+++KNLD +ID+
Sbjct: 241 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 300
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+ L F+ FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 301 ERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 359
Query: 202 PFLRKQERES 211
RK++R++
Sbjct: 360 LAQRKEDRKA 369
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V L RS G+G+V +++ EAT
Sbjct: 283 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 341 KAVTEMNGRIVGTKPLYVALAQR 363
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/411 (52%), Positives = 295/411 (71%), Gaps = 12/411 (2%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G + SLYVGDLD + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+
Sbjct: 4 GGGPTYPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQP 63
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RALD +NF + GKP+RIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS F
Sbjct: 64 ADAERALDTMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAF 123
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GNILSCKVA D G S+G+GFV F+ +E+A A+ K+NGM+LN K+V+VG F+ + ER +
Sbjct: 124 GNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLA 183
Query: 212 TADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+ RF N+YVKN + +D L+ F ++G + S VM D G S+ FGFV++++P
Sbjct: 184 AMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEP 243
Query: 270 DDAARSVEALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
D A ++ E +N + DD + YVG+AQKK ER+ ELK KFE+ +E +++G+NLYVKN
Sbjct: 244 DSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKN 303
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD +I ++ L++ FS+FGTITS KVM + NG S+G GFV FS+ EEA+KA+TEMNG++VV
Sbjct: 304 LDSTIDEEILRKEFSQFGTITSSKVMTE-NGRSKGFGFVCFSSPEEATKAVTEMNGRIVV 362
Query: 389 SKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYG 439
SKPLYVALAQRKE+R+A+L +Q+ Q G RMP P Q+F G
Sbjct: 363 SKPLYVALAQRKEDRKAQLASQYMQRM--AGMRMPAPQP------NQMFQG 405
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/446 (47%), Positives = 302/446 (67%), Gaps = 44/446 (9%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL++L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKVAT
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVAT 169
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D G+S+GYGFV ++ E+A +AI +NGMLLNDK+V+VGP + ++ER+S + K +F
Sbjct: 170 DEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFT 229
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKN+ T+++ +++F +FG +TS + RD +G+SK FGFVNF+ ++A + VE+L
Sbjct: 230 NVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESL 289
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ + + K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D + D++L+
Sbjct: 290 HDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLR 349
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F FGTITS KVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+LAQR
Sbjct: 350 QEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 409
Query: 400 KEERRARLQAQFSQM----------------------------------------RPPVG 419
+E RR +L++Q +Q +P +
Sbjct: 410 REVRRQQLESQIAQRNQIRMQQAAVAGGYINGPLYYPPGPGGFPPQGGRGMMGYGQPGML 469
Query: 420 PRMPMYPP--VAPGLGQQLFYGQGPP 443
P P YPP PG+ YGQ PP
Sbjct: 470 PPRPRYPPNGQVPGMPIPAPYGQAPP 495
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/377 (56%), Positives = 286/377 (75%), Gaps = 2/377 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVG+LD +V ++ LY++F+ +G V S+RVCRD TRRSLGY YVNY A +A RAL
Sbjct: 172 NTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERAL 231
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + K RIM+S RDP++RK+G GNIFIKNLD++IDNKALHDTF+ FG+ILSCK
Sbjct: 232 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCK 291
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VATD G S+GYGFV + ESA++AI +NGM LNDK VFVG + +++R++ D+ R
Sbjct: 292 VATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRS 351
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KNL TT ++L ++FG+FG ITS AV D GK + FGFVN+++ + A+++V
Sbjct: 352 QFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAV 411
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+AL+ K + YV +AQK+ ER+ ELK EQ ET K++G+NLYVKNLDD D+
Sbjct: 412 DALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDE 471
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ FGTITSCKVM+D G S+G GFV FS+ +EA+KA+ EMNGKM+ SKPLYV+L
Sbjct: 472 KLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSL 531
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE R+ +L+AQ SQ
Sbjct: 532 AQRKEVRKQQLEAQMSQ 548
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 152/288 (52%), Gaps = 15/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ LD ++ L++ FS G + S +V D++ + S GY +V + N A+ A+++
Sbjct: 174 SLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQ 233
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN L+ +K + +R+ + KT N+++KNL ET L F FG I S
Sbjct: 234 LNYSLIKNKACRI----MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILS 289
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G SK +GFV++ + A +++ +NG + +DK +VG + +R+ ++
Sbjct: 290 CKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKID-- 347
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E +F NLY+KNL + ++L E+F +FG ITS V D +G RG GFV
Sbjct: 348 ------EVRSQF--TNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFV 399
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+ E ASKA+ ++ K LYVA AQ++ ER A L+ Q +
Sbjct: 400 NYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQK 447
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/410 (53%), Positives = 302/410 (73%), Gaps = 10/410 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 193
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 194 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 252
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKNL E L+ +F +FG + S VMRD++G+S+ FGFVNF+ ++A ++V+
Sbjct: 253 FTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 312
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+D++
Sbjct: 313 HMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDER 372
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 373 LKEVFSAYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 431
Query: 398 QRKEERRARLQAQF-SQMRPPV-----GPRMPMYPPVAPGLGQQLFYGQG 441
QRKEER+A L Q+ Q+ PV P + V+ Q ++YG G
Sbjct: 432 QRKEERKAILTNQYRRQLSRPVLSSFQQPTNYLLSAVSQSTAQAVYYGSG 481
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 168/311 (54%), Gaps = 16/311 (5%)
Query: 106 LNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SL 164
L G P + DP + ++++ +L + L++ FS G ILS +V D +
Sbjct: 52 LLGDPFLGALNTMDPGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVAT 111
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224
+S GY ++ F A+ A+D +N ++ + + + R+ K+ N+++K
Sbjct: 112 RRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRI----MWSHRDPGLRKSGMGNIFIK 167
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NL + L F FG I S+ V+ + G S+ FGFV+F+ + A +++ +NG
Sbjct: 168 NLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 226
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
+D++ +VG + + +RE EL + +L T N+YVKNL + + L++LFS+
Sbjct: 227 NDRKVFVGHFKSRQKREAELGAR---ALGFT-------NVYVKNLHMDMDEQGLQDLFSQ 276
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
FG + S KVMRD NG SRG GFV F EEA KA+ MNGK V + LYV AQ++ ER+
Sbjct: 277 FGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQ 336
Query: 405 ARLQAQFSQMR 415
+ L+ +F Q++
Sbjct: 337 SELKRRFEQVK 347
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 25/211 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + +++ L DLF+Q G++ SV+V RD S +S G+G+VN+ E
Sbjct: 248 ARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRD-SNGQSRGFGFVNFEKHEE 306
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N + G+ + R ++ R G N+++KNLD
Sbjct: 307 AQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGV-NLYVKNLD 365
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI+++ L + FS +G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 366 DSINDERLKEVFSAYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 424
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y + LS
Sbjct: 425 PLYVALAQRKEER-----KAILTNQYRRQLS 450
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/423 (52%), Positives = 296/423 (69%), Gaps = 16/423 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SID+KAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F +ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAELGAQALA 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F EFG + S VMRD G S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSISD+K
Sbjct: 250 HMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ +FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG +V +KPLYVALA
Sbjct: 310 LRTVFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQM--------RPPVG----PRMPMYPPVAPGLGQQLFYGQGPPII 445
QRKEER+A L Q+ Q RP +G P P VA Q YG +
Sbjct: 369 QRKEERKAILTNQYMQRLSTVQALGRPVMGSFQQPNSYFLPAVAQPPAQATCYGGSGSVA 428
Query: 446 PPQ 448
P Q
Sbjct: 429 PVQ 431
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 27/226 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A+ T++YV +L + +++ L DLF + G+++SV+V RD ++ S G+G+VN+ E
Sbjct: 185 AQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRD-NSGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R +D R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI ++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSISDEKLRTVFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGCIVGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
++V RK+ER K N Y++ LS T + + + G F
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYMQRLS--TVQALGRPVMGSF 400
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/451 (51%), Positives = 304/451 (67%), Gaps = 19/451 (4%)
Query: 6 VQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
+Q A A + SP ++ G + F + SLYVGD+ V ++ L+++FN +G
Sbjct: 47 LQNMANAATSPTNSPTAASVS-----GPVQPFQTASLYVGDIHPDVTEALLFEIFNAVGP 101
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V S+RVCRD TRRSLGY YVN++ +A RALD +NFT + G P RIM+S RDP++RKS
Sbjct: 102 VASIRVCRDAVTRRSLGYAYVNFHNLVDAERALDTMNFTCIKGVPCRIMWSQRDPSLRKS 161
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GNIF+KNLD SIDNKAL+DTFS FGNILSCKVA D GQS+GYG+V ++ E+A AI
Sbjct: 162 GVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTGQSKGYGYVHYETAEAATEAI 221
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+K+NGML+ +VFVG F ++QER D T N YVKNL T+ DL++ F FG +
Sbjct: 222 NKINGMLIAGTEVFVGHFQKRQERPDIEDWT---NCYVKNLPTQWTDADLRREFEPFGQV 278
Query: 246 TSTAVMRDADGKS-KCFGFVNFDDPDDAARSVEALNGKKFD-----DKEWYVGKAQKKYE 299
S VM+D + + + FGFVN++D D A +VE L+GK F D E YVGKAQK+ E
Sbjct: 279 NSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTE 338
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL+ KF+Q E +K++G+NLYVKNLDD + D++L+E F+ +GTITS +VMRD G
Sbjct: 339 RERELRQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTG 398
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP-- 417
SRG GFV FST EEA+ A+ EMNGK++ KP+YVA AQRKE RRA+L+AQ +Q
Sbjct: 399 NSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVYVAFAQRKEVRRAQLEAQHAQRATGVL 458
Query: 418 VGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
V MPM P P G +FY Q P +P Q
Sbjct: 459 VNRGMPMGQP--PMYGAPMFYAQ-PNQMPMQ 486
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/376 (57%), Positives = 283/376 (75%), Gaps = 4/376 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+ +DA ++VE
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVE 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+KNLDD+I D+K
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ 413
QRKEER+A L Q+ Q
Sbjct: 369 QRKEERKAHLTNQYMQ 384
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF++ G+ +SV+V D T +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHED 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N +NGK + R + I + N++IKNLD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 363 LYVALAQRKEER-----KAHLTNQYMQRIA 387
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/382 (57%), Positives = 284/382 (74%), Gaps = 7/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F + S VMRD GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSK---TLSVKVMRDPSGKSKGFGFVSYEKHED 240
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 241 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 300
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 301 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 359
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 360 LYVALAQRKEERKAHLTNQYMQ 381
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 285/377 (75%), Gaps = 2/377 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 48 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + +P RIM+S RDP +RK+G GNIFIKNLD++IDNKALHDTF+ FG +LSCK
Sbjct: 108 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCK 167
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S ++ R
Sbjct: 168 VATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRA 227
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKNL T+D+ ++F ++G +TS + D +GKSK FGFVNF+ D+A ++V
Sbjct: 228 QFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAV 287
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN + K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D + DD
Sbjct: 288 DELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDD 347
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FGTITSCKVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 348 KLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 407
Query: 397 AQRKEERRARLQAQFSQ 413
AQR+E RR +L++Q +Q
Sbjct: 408 AQRREVRRQQLESQIAQ 424
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/377 (56%), Positives = 287/377 (76%), Gaps = 4/377 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RAL+
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKV
Sbjct: 71 GMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR- 217
A D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE +K +
Sbjct: 131 AQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL 190
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN E +++ L+++F ++G ITS VM DG S+ FGFV F+DPD A R+
Sbjct: 191 FTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACM 250
Query: 278 ALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDD+I D+
Sbjct: 251 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 310
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L++ F+ FGTITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVAL
Sbjct: 311 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 369
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+R+A L +Q+ Q
Sbjct: 370 AQRKEDRKAHLTSQYMQ 386
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 162/290 (55%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FST G +LS +V D + + S GY +V F A+ A++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL +T + F FG I
Sbjct: 71 GMNFDIIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S+E +NG + K+ YVG+ + ERE EL
Sbjct: 127 SCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + SD+ L+E+F ++G ITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGK-MVVSKPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A E+NGK +V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 286
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 165/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D T S GYG+V++ A +++++
Sbjct: 100 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + ++ L + F +G I
Sbjct: 159 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERESTA 213
S KV G SRG+GFV F++ ++A+ A +LNG L+ K ++VG +K ER+
Sbjct: 219 TSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKEL 278
Query: 214 DK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ TR+ N+YVKNL +T ++ L+K F FG ITS VM + DG+SK F
Sbjct: 279 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 338 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRM 388
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V L RS G+G+V +++ EAT
Sbjct: 292 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEAT 349
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 350 KAVTEMNGRIVGTKPLYVALAQR 372
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/377 (55%), Positives = 283/377 (75%), Gaps = 2/377 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVG+LD +V ++ LY++F+ +G V S+RVCRD TRRSLGY YVNY A +A RAL
Sbjct: 56 NTSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERAL 115
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + K RIM+S RDP++RK+G GNIFIKNLD++IDNKALHDTF+ FG+ILSCK
Sbjct: 116 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCK 175
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VA DS G S+GYGFV + ESA++AI +NGM LNDK VFVG + ++ER++ D+ R
Sbjct: 176 VAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRA 235
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KNL T ++L ++F ++G +TS AV D GK + FGFVN+++ + A+++V
Sbjct: 236 HFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAV 295
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EAL+ K + YV +AQK+ ER+ EL+ EQ ET K++G+NLY+KNLDD D+
Sbjct: 296 EALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDE 355
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FGTITSCKVM+D G+SRG GFV FS +EA+KA+ EMNGKM+ SKPLYV+L
Sbjct: 356 KLQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSL 415
Query: 397 AQRKEERRARLQAQFSQ 413
AQRK+ R+ +L+AQ SQ
Sbjct: 416 AQRKDVRKQQLEAQMSQ 432
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/420 (53%), Positives = 293/420 (69%), Gaps = 16/420 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA---HE 93
++SLYVGDL+ V ++QL++LF+ +G V S+RVCRD TRRSLGY YVNYN+A
Sbjct: 18 LTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQA 77
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RA++ LN+ LNGKP+RIM+S+RDP+ RKSG GNIFIKNLDKSID KALHDTFS FG
Sbjct: 78 AERAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFGK 137
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVATD+ G S+GYGFV F+++ +A AI +N + K V+VGPF ++ +R
Sbjct: 138 ILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQGK 197
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
D + NV+VKNL +D+L K+ EFG +TS VM+D G SK FGF+NF D + AA
Sbjct: 198 DV--YTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECAA 255
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+ VEALN K+ K Y G+AQKK ERE L+ K E+S +E K++G+NLYVKNL D +
Sbjct: 256 KCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADEV 315
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DD L++LF+ GTITSCKVM+D +G S+G GFV F++ +EA++A+TEMNGKMV KPLY
Sbjct: 316 DDDALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLY 375
Query: 394 VALAQRKEERRARLQAQF-------SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 446
VALAQRK+ RRA+L+A + RPP P M P G G F+ GP +P
Sbjct: 376 VALAQRKDVRRAQLEANVQNRLGMGAMTRPP-NPMTGMGP---YGPGAMPFFAAGPGGMP 431
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/376 (57%), Positives = 286/376 (76%), Gaps = 4/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 QDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E +++ L+ +F ++G ITS VM DG S+ FGFV F+DPD A R+
Sbjct: 183 TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDD+I D++
Sbjct: 243 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 303 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Query: 398 QRKEERRARLQAQFSQ 413
QRKE+R+A L +Q+ Q
Sbjct: 362 QRKEDRKAHLTSQYMQ 377
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 161/290 (55%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 62 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D +G SK +GFV+F+ + A +S+E +NG + K+ YVG+ + ERE EL
Sbjct: 118 SCKVAQDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + SD+ L+++F ++G ITS KVM +G SRG GF
Sbjct: 177 -------EKAKLF--TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGF 227
Query: 367 VAFSTAEEASKALTEMNGK-MVVSKPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A E+NGK +V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 228 VAFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 277
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 164/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S GYG+V++ A +++++
Sbjct: 91 NVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQD-ENGASKGYGFVHFETEEAANKSIEK 149
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + ++ L D F +G I
Sbjct: 150 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRI 209
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERESTA 213
S KV G SRG+GFV F++ ++A+ A +LNG L+ K ++VG +K ER+
Sbjct: 210 TSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKEL 269
Query: 214 DK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ TR+ N+YVKNL +T ++ L+K F FG ITS VM + DG+SK F
Sbjct: 270 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGF 328
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 329 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRM 379
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 23/191 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC--RDLSTRRSLGYGYVNYNAAHEATRA 97
T++YV + +D L D+F + G++ S +V D S+R G+G+V + A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSR---GFGFVAFEDPDAAERA 239
Query: 98 LDELNFTPL-NGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
ELN L GKP+ R + + + N+++KNLD +ID
Sbjct: 240 CLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTID 299
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
++ L F+ FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 300 DERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 358
Query: 201 GPFLRKQERES 211
RK++R++
Sbjct: 359 ALAQRKEDRKA 369
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V L RS G+G+V +++ EAT
Sbjct: 283 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 341 KAVTEMNGRIVGTKPLYVALAQR 363
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/377 (56%), Positives = 286/377 (75%), Gaps = 2/377 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+TSLYVG+LD +V ++ LY++F+ +G V S+RVCRD TRRSLGY YVNY A +A RAL
Sbjct: 83 NTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERAL 142
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + K RIM+S RDP++RK+G GNIFIKNLD++IDNKALHDTF+ FG+ILSCK
Sbjct: 143 EQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCK 202
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VATD G S+GYGFV + ESA++AI +NGM LNDK VFVG + +++R++ D+ R
Sbjct: 203 VATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRS 262
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KNL TT ++L ++FG+FG ITS AV D GK + FGFVN+++ + A+++V
Sbjct: 263 QFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAV 322
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+AL+ K + YV +AQK+ ER+ ELK EQ ET K++G+NLYVKNLDD D+
Sbjct: 323 DALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDE 382
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ FGTITSCKVM+D G S+G GFV FS+ +EA+KA+ EMNGKM+ SKPLYV+L
Sbjct: 383 KLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSL 442
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE R+ +L+AQ SQ
Sbjct: 443 AQRKEVRKQQLEAQMSQ 459
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 152/288 (52%), Gaps = 15/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ LD ++ L++ FS G + S +V D++ + S GY +V + N A+ A+++
Sbjct: 85 SLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQ 144
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN L+ +K + +R+ + KT N+++KNL ET L F FG I S
Sbjct: 145 LNYSLIKNKACRI----MWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILS 200
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G SK +GFV++ + A +++ +NG + +DK +VG + +R+ ++
Sbjct: 201 CKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKID-- 258
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E +F NLY+KNL + ++L E+F +FG ITS V D +G RG GFV
Sbjct: 259 ------EVRSQF--TNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFV 310
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+ E ASKA+ ++ K LYVA AQ++ ER A L+ Q +
Sbjct: 311 NYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQK 358
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/405 (53%), Positives = 289/405 (71%), Gaps = 6/405 (1%)
Query: 13 AVAAQPSPAT----NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
A AA PS T +N + S SLY+G+LD V ++ L++LFN +G V S
Sbjct: 38 AAAAAPSEETKDSSESASNKTKSENGNTSTSASLYIGELDPMVTEAMLFELFNSIGPVAS 97
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD TRRSLGY YVN++ + +ALDELN+T + G+P RIM+S RDP++RK G G
Sbjct: 98 IRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTG 157
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+FIKNLD +IDNKALHDTFS FG ILSCKVA D LG S+GYGFV FD+ +SA +AI+ +
Sbjct: 158 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHV 217
Query: 189 NGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NGMLLNDK+V+VG + +++R+S A K F NVYVKNL TTE++ K+F ++G IT
Sbjct: 218 NGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKIT 277
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S ++ +D GK + F FVNF D A ++V+ LN ++ K+ YVG+AQKK+ER+ EL+
Sbjct: 278 SLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRK 337
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
++EQ E +K++G+NL+VKNL D I D++LK FS FGTITS KVM D N S+G GF
Sbjct: 338 QYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGF 397
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
V +S EEA+KA+ EMN +M+ KPLYVALAQRKE RR++L+AQ
Sbjct: 398 VCYSNPEEATKAIAEMNQRMLAGKPLYVALAQRKEVRRSQLEAQI 442
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/376 (56%), Positives = 287/376 (76%), Gaps = 4/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RAL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTF+ FGNILSCKVA
Sbjct: 72 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 132 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN E +++ L+++F ++G ITS VM DG S+ FGFV F+DPD A R+
Sbjct: 192 TNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACME 251
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDD+I D++
Sbjct: 252 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ FGTITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 312 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 370
Query: 398 QRKEERRARLQAQFSQ 413
QRKE+R+A L +Q+ Q
Sbjct: 371 QRKEDRKAHLTSQYMQ 386
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 162/290 (55%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FST G +LS +V D + + S GY +V F A+ A++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL +T + F FG I
Sbjct: 71 GMNFDIIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S+E +NG + K+ YVG+ + ERE EL
Sbjct: 127 SCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG- 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + SD+ L+E+F ++G ITS KVM +G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGK-MVVSKPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A E+NGK +V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 237 VAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 286
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 164/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F G ++S +V +D T S GYG+V++ A +++++
Sbjct: 100 NVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + ++ L + F +G I
Sbjct: 159 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRI 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERESTA 213
S KV G SRG+GFV F++ ++A+ A +LNG L+ K ++VG +K ER+
Sbjct: 219 TSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKEL 278
Query: 214 DK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ TR+ N+YVKNL +T ++ L+K F FG ITS VM + DG+SK F
Sbjct: 279 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGF 337
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 338 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRM 388
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V L RS G+G+V +++ EAT
Sbjct: 292 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEAT 349
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 350 KAVTEMNGRIVGTKPLYVALAQR 372
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/382 (56%), Positives = 284/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + + LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ +EA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K + E N+Y+KN D + D +LKELFS++G S KVM DP+G S+G GF
Sbjct: 186 KAK----------EFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A+KA+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D+ L + FS +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 218 LSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F PD+A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/382 (56%), Positives = 284/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + + LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ +EA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K + E N+Y+KN D + D +LKELFS++G S KVM DP+G S+G GF
Sbjct: 186 KAK----------EFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A+KA+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D+ L + FS +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 218 LSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F PD+A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/465 (49%), Positives = 302/465 (64%), Gaps = 58/465 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKES 405
Query: 359 ------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++
Sbjct: 406 EEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 465
Query: 407 LQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLFYGQG 441
L+A Q R + P+ M P V G GQQ F G
Sbjct: 466 LEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAG 509
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/382 (56%), Positives = 284/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + + LK++F ++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ +EA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K + E N+Y+KN D + D +LKELFS++G S KVM DP+G S+G GF
Sbjct: 186 KAK----------EFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A+KA+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D+ L + FS +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 218 LSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F PD+A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/388 (55%), Positives = 285/388 (73%), Gaps = 4/388 (1%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G G + SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+
Sbjct: 8 GAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQ 67
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+A RALD +NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DTFS
Sbjct: 68 QPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFS 127
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKVA D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F + R
Sbjct: 128 MFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTAR 187
Query: 210 ESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+T RF NVY+KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV F+
Sbjct: 188 LREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFE 247
Query: 268 DPDDAARSVEALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
+P+DA ++V ++ + +++ YV +AQKK ER ELK ++EQ E +++G+NLY
Sbjct: 248 NPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLY 307
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
VKNLDD+++DD LK+ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMNGK
Sbjct: 308 VKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 367
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
M+ +KPLYVALAQRKE+R+A+L +Q+ Q
Sbjct: 368 MMCTKPLYVALAQRKEDRKAQLASQYMQ 395
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 170/299 (56%), Gaps = 23/299 (7%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD S+++ +YD F+ G ++S +V D + S GYG+V++ A
Sbjct: 101 RRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESA 159
Query: 95 TRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTF 148
+A++++N L GK + + + R +R+ G N++IKN +D +AL F
Sbjct: 160 QKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLF 219
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRK 206
S FG I S V D+ G+S+G+GFV F+N E A+ A+ +++ L +++++V +K
Sbjct: 220 SKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKK 279
Query: 207 QERESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
ER S K R+ N+YVKNL +T +D LK+ F +G ITS VM D
Sbjct: 280 NER-SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCD 338
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+G+SK FGFV F+ PD+A ++V +NGK K YV AQ+K +R+ +L ++ Q L
Sbjct: 339 DNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 167/306 (54%), Gaps = 25/306 (8%)
Query: 121 TIRKSGAG--------NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYG 171
T+ +GAG ++++ +L + L + FS+ G +LS +V D++ + S GY
Sbjct: 3 TVATAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYA 62
Query: 172 FVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
+V F A+ A+D +N ++ K + + +R+ + ++ N+++KNL ++
Sbjct: 63 YVNFQQPADAERALDTMNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSID 118
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+ F FG I S V D + SK +GFV+F+ + A +++E +NG + K+ YV
Sbjct: 119 NKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 178
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
GK Q + R E+ ETA +F N+Y+KN D + + L++LFS+FG ITS
Sbjct: 179 GKFQPRTARLREMG--------ETARRF--TNVYIKNFADELDKEALEKLFSKFGKITSA 228
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRKEERRARLQA 409
VM D +G S+G GFVAF E+A KA+TEM+ + + LYV AQ+K ER A L+
Sbjct: 229 AVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKR 288
Query: 410 QFSQMR 415
++ Q +
Sbjct: 289 RYEQQK 294
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/467 (49%), Positives = 302/467 (64%), Gaps = 60/467 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPK 405
Query: 359 --------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR
Sbjct: 406 ESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 465
Query: 405 ARLQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLFYGQG 441
++L+A Q R + P+ M P V G GQQ F G
Sbjct: 466 SQLEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAG 511
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/388 (55%), Positives = 285/388 (73%), Gaps = 4/388 (1%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G G + SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+
Sbjct: 8 GAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQ 67
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+A RALD +NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DTFS
Sbjct: 68 QPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFS 127
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKVA D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F + R
Sbjct: 128 MFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTAR 187
Query: 210 ESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+T RF NVY+KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV F+
Sbjct: 188 LREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFE 247
Query: 268 DPDDAARSVEALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
+P+DA ++V ++ + +++ YV +AQKK ER ELK ++EQ E +++G+NLY
Sbjct: 248 NPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLY 307
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
VKNLDD+++DD LK+ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMNGK
Sbjct: 308 VKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 367
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
M+ +KPLYVALAQRKE+R+A+L +Q+ Q
Sbjct: 368 MMCTKPLYVALAQRKEDRKAQLASQYMQ 395
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 170/299 (56%), Gaps = 23/299 (7%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD S+++ +YD F+ G ++S +V D + S GYG+V++ A
Sbjct: 101 RRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESA 159
Query: 95 TRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTF 148
+A++++N L GK + + + R +R+ G N++IKN +D +AL F
Sbjct: 160 QKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLF 219
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRK 206
S FG I S V D+ G+S+G+GFV F+N E A+ A+ +++ L +++++V +K
Sbjct: 220 SKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKK 279
Query: 207 QERESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
ER S K R+ N+YVKNL +T +D LK+ F +G ITS VM D
Sbjct: 280 NER-SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCD 338
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+G+SK FGFV F+ PD+A ++V +NGK K YV AQ+K +R+ +L ++ Q L
Sbjct: 339 DNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 167/306 (54%), Gaps = 25/306 (8%)
Query: 121 TIRKSGAG--------NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYG 171
T+ +GAG ++++ +L + L + FS+ G +LS +V D++ + S GY
Sbjct: 3 TVATAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYA 62
Query: 172 FVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
+V F A+ A+D +N ++ K + + +R+ + ++ N+++KNL ++
Sbjct: 63 YVNFQQPADAERALDTMNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSID 118
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+ F FG I S V D + SK +GFV+F+ + A +++E +NG + K+ YV
Sbjct: 119 NKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 178
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
GK Q + R E+ ETA +F N+Y+KN D + + L++LFS+FG ITS
Sbjct: 179 GKFQPRTARLREMG--------ETARRF--TNVYIKNFADELDKEALEKLFSKFGKITSA 228
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRKEERRARLQA 409
VM D +G S+G GFVAF E+A KA+TEM+ + + LYV AQ+K ER A L+
Sbjct: 229 AVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKR 288
Query: 410 QFSQMR 415
++ Q +
Sbjct: 289 RYEQQK 294
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/419 (53%), Positives = 288/419 (68%), Gaps = 31/419 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + + L++ F FG S VM D G+SK FGFVNF+ DA ++VE
Sbjct: 191 TNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVED 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ---------------MRPPVG----------PRMPMY--PPVAP 430
RKEER+A L Q+ Q +PP G PR P Y PVAP
Sbjct: 370 RKEERKAILTNQYMQRLATLRTLPGPLFCSFQPPPGYFVPSIPQPQPRTPYYNASPVAP 428
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/376 (56%), Positives = 289/376 (76%), Gaps = 5/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+A
Sbjct: 72 MNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-TADKT-RF 218
+D G S+GYGFV F+ EE+A+ AI+K+NGMLLN K+V+VG F+ ++ER + DK RF
Sbjct: 132 SDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKRF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NNVY+KN + +D ++++F FG I S VM D GKS+ FGFV++++P+ A ++V+
Sbjct: 191 NNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDN 250
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNG + K Y G+AQKK ER+ ELK KFE+ E ++++G+NLYVKNLDD + D++
Sbjct: 251 LNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDER 310
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+FGTITS +VM + G S+G GFV FS+ EEA+KA+TEMNG+++VSKPLYVALA
Sbjct: 311 LRKEFSQFGTITSARVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVALA 369
Query: 398 QRKEERRARLQAQFSQ 413
QRKE+RRA L +Q+ Q
Sbjct: 370 QRKEDRRAHLASQYMQ 385
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 166/291 (57%), Gaps = 22/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S ++ D + S GYG+V++ A +A+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENG--SKGYGFVHFETEEAARQAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R I G N++IKN +D+ + + F FG I
Sbjct: 158 VNGMLLNGKKVYVGKFIPRKERIALLGDKMKRFNNVYIKNFGDELDDDKIRELFDPFGKI 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV-FVGPFLRKQEREST- 212
+S KV TD +G+SRG+GFV ++ E+A+ A+D LNGM L +V + G +K ER++
Sbjct: 218 ISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAERQAEL 277
Query: 213 ADK------TRFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
DK R N N+YVKNL + ++ L+K F +FG ITS VM + G+SK F
Sbjct: 278 KDKFEKIKMERINRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEG-GRSKGF 336
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R L ++ Q +
Sbjct: 337 GFVCFSSPEEATKAVTEMNGRIIVSKPLYVALAQRKEDRRAHLASQYMQRM 387
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 157/289 (54%), Gaps = 17/289 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L + FST G +LS +V D + + S GY +V F A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + + + +R+ + K+ NV++KNL ++ L F FG I S
Sbjct: 72 MNFDTIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ D +G SK +GFV+F+ + A +++E +NG + K+ YVGK + ER L K
Sbjct: 128 CKIASDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDK 186
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+ +F N+Y+KN D + DDK++ELF FG I S KVM D G SRG GFV
Sbjct: 187 MK--------RFN--NVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFV 236
Query: 368 AFSTAEEASKALTEMNG-KMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
++ E A KA+ +NG ++ K LY AQ+K ER+A L+ +F +++
Sbjct: 237 SYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIK 285
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD V+D +L F+Q G + S RV + RS G+G+V +++ EAT
Sbjct: 291 RYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEGG--RSKGFGFVCFSSPEEAT 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 349 KAVTEMNGRIIVSKPLYVALAQR 371
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/375 (56%), Positives = 283/375 (75%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ LK+IF ++G S VM D GKS+ FGFV+++ +DA ++VE
Sbjct: 191 TNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 MNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAHLTNQYMQ 384
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K + E N+Y+KN D + D++LKE+F ++G S KVM DP+G SRG GF
Sbjct: 186 KAK----------EFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V++ E+A+KA+ EMNG + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 236 VSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLK 284
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + F +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+SRG+GFV ++ E A A++++NG LN K VFVG +K ER++
Sbjct: 218 LSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK FG
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRI 386
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/456 (49%), Positives = 295/456 (64%), Gaps = 64/456 (14%)
Query: 18 PSPA--TNGIANNGGVGD---------ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
P+PA TNG +N + Q S SLYVG+LD SV ++ LY+LF+ +GQV
Sbjct: 9 PAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQV 68
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +RK+G
Sbjct: 69 ASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTG 128
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F +FG
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE 248
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ERE EL
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEEL 308
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-------- 356
+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 309 RKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETAT 368
Query: 357 -------------------------------------------PNGISRGSGFVAFSTAE 373
P G S+G GFV FS+ +
Sbjct: 369 PESETKESANKENEKAAEGEKEPAAEEKEKEEEKEAEQKPEKKPLGKSKGFGFVCFSSPD 428
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 429 EASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 464
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 167/344 (48%), Gaps = 70/344 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAA 183
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + + S +D + K+ NI+IKN+D ++++ F
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I S ++ DS G+SRG+GFV F ESA++A++++N + ++++VG +K E
Sbjct: 244 EKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHE 303
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD- 255
RE A K + N+YVKNL++ +D L+++FG +G ITS VMRD
Sbjct: 304 REEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAP 363
Query: 256 --------------------------------------------------GKSKCFGFVN 265
GKSK FGFV
Sbjct: 364 VETATPESETKESANKENEKAAEGEKEPAAEEKEKEEEKEAEQKPEKKPLGKSKGFGFVC 423
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
F PD+A+++V +N + + K YV AQ+K R +L+ +
Sbjct: 424 FSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 467
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/421 (54%), Positives = 297/421 (70%), Gaps = 18/421 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRDKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK D K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG+++ SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM----PMYPPVAPG-------LGQQLFYGQGPPIIP 446
QRKEER+A L +Q+ MR G RM ++PP G Q F+ GP I
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRMQQLGQLFPPNTAGGFFVPTMTPSQRFF--GPQITT 418
Query: 447 P 447
P
Sbjct: 419 P 419
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/456 (49%), Positives = 295/456 (64%), Gaps = 64/456 (14%)
Query: 18 PSPA--TNGIANNGGVGD---------ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
P+PA TNG +N + Q S SLYVG+LD SV ++ LY+LF+ +GQV
Sbjct: 9 PAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQV 68
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +RK+G
Sbjct: 69 ASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTG 128
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F +FG
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE 248
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ERE EL
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEEL 308
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-------- 356
+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 309 RKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETAT 368
Query: 357 -------------------------------------------PNGISRGSGFVAFSTAE 373
P G S+G GFV FS+ +
Sbjct: 369 PESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPD 428
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 429 EASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 464
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 167/344 (48%), Gaps = 70/344 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAA 183
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + + S +D + K+ NI+IKN+D ++++ F
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I S ++ DS G+SRG+GFV F ESA++A++++N + ++++VG +K E
Sbjct: 244 EKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHE 303
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD- 255
RE A K + N+YVKNL++ +D L+++FG +G ITS VMRD
Sbjct: 304 REEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAP 363
Query: 256 --------------------------------------------------GKSKCFGFVN 265
GKSK FGFV
Sbjct: 364 VETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVC 423
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
F PD+A+++V +N + + K YV AQ+K R +L+ +
Sbjct: 424 FSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 467
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/456 (49%), Positives = 295/456 (64%), Gaps = 64/456 (14%)
Query: 18 PSPA--TNGIANNGGVGD---------ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
P+PA TNG +N + Q S SLYVG+LD SV ++ LY+LF+ +GQV
Sbjct: 9 PAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQV 68
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +RK+G
Sbjct: 69 ASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTG 128
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F +FG
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE 248
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ERE EL
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEEL 308
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-------- 356
+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 309 RKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETAT 368
Query: 357 -------------------------------------------PNGISRGSGFVAFSTAE 373
P G S+G GFV FS+ +
Sbjct: 369 PESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPD 428
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 429 EASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 464
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 167/344 (48%), Gaps = 70/344 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAA 183
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + + S +D + K+ NI+IKN+D ++++ F
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I S ++ DS G+SRG+GFV F ESA++A++++N + ++++VG +K E
Sbjct: 244 EKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHE 303
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD- 255
RE A K + N+YVKNL++ +D L+++FG +G ITS VMRD
Sbjct: 304 REEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAP 363
Query: 256 --------------------------------------------------GKSKCFGFVN 265
GKSK FGFV
Sbjct: 364 VETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVC 423
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
F PD+A+++V +N + + K YV AQ+K R +L+ +
Sbjct: 424 FSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 467
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/408 (53%), Positives = 300/408 (73%), Gaps = 15/408 (3%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A +A+ ++GIA N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVC
Sbjct: 50 ADSAEEQGESSGIAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVASIRVC 99
Query: 73 RDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFI 132
RD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R+SG GNIFI
Sbjct: 100 RDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFI 159
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNL +IDNKALHDTFS FG ILS KVATD LGQS+ +GFV ++ EE+A++AI+ +NGML
Sbjct: 160 KNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGML 219
Query: 193 LNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++V+VG + K++RES + K + N+YVKN+ TE + +++F FG ITS +
Sbjct: 220 LNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYL 279
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+DA+GKSK FGFVNF++ + AA++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 280 EKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEA 339
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
E K++G+NL+VKNLD+ I +KL+E F FGTITS KVM D G S+G GFV FS
Sbjct: 340 VRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFS 399
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
T EEA+KA+TEMN +MV KPLYVALAQRK+ RR++L+ Q +QMR
Sbjct: 400 TPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMR 447
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/433 (50%), Positives = 309/433 (71%), Gaps = 23/433 (5%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+TSLYVG+L+ +VN++ L+++FN +G V S+RVCRD TRRSLGY YVN+ A ++ RA
Sbjct: 78 VNTSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERA 137
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L++LN+TP+ G+P RIM+S RDP R++G GNIFIKNLD++IDNKALHDTF+ FG ILSC
Sbjct: 138 LEQLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSC 197
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVA++ G S GYGFV +++ ++A++AI +NGMLLNDK+V+VG + K++R++ ++ R
Sbjct: 198 KVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEAR 256
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ NVYVKNL T+++ +K+F ++G ITS A+ D +GKS+ FGFVNF + + AA++
Sbjct: 257 AHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKA 316
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN +F ++ ++G+AQKK ERE EL+ +E + E K++G+NLY+KNL + D
Sbjct: 317 VEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDD 376
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++L+E F+ FGT TS KVMR P G SRG GFV +S EEA+KA+ EMNGKM+ ++PLYVA
Sbjct: 377 ERLQEEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVA 436
Query: 396 LAQRKEERRARLQAQF---SQMR-----------PPVGPRMP-MY---PPVAPGLGQQLF 437
LAQRK+ R +L AQ +Q+R + P P MY PP A G+GQ F
Sbjct: 437 LAQRKDVRHQQLAAQMMQHNQLRLQQQQAAAAAAAQMYPGAPGMYYPQPPAAAGMGQ--F 494
Query: 438 YGQGPPIIPPQVI 450
GQ P P ++
Sbjct: 495 PGQVRPQYAPGIM 507
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/466 (47%), Positives = 305/466 (65%), Gaps = 62/466 (13%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 62 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 121
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 122 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 181
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 182 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 241
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F N+YVKN++ T+D+ + +F FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 242 ANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + D
Sbjct: 302 VDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDD 361
Query: 336 DKLKELFSEFGTITSCKVMRD--------------------------------------- 356
+KL++LF++FG ITS KVMRD
Sbjct: 362 EKLRQLFADFGPITSAKVMRDNATESGNEDEGSSDDKENEPKKEEGEEKAEEAKSEDKED 421
Query: 357 ------------PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
P+G S+G GFV FS ++A+KA+ EMN +MV KPLYVALAQRK+ R+
Sbjct: 422 ADKKADKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRK 481
Query: 405 ARLQAQF---SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQG 441
++L+A +Q+R P+ M PPV GQQ + QG
Sbjct: 482 SQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAAGQQPVFPQG 527
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/414 (52%), Positives = 289/414 (69%), Gaps = 12/414 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR+SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ PL G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+YVKN T + LK++F EFG I S VM+D +GKSK FGFV + DPD A +V
Sbjct: 190 KFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-GLNLYVKNLDDSISD 335
++GK+ + + Y +AQ+K ER+ ELK K E+ E + +NLYVKNLDD+I D
Sbjct: 250 RTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDD 309
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+L+E FS G+ITS KVM+D N S+G GFV F+ E+A++A+T+MNG ++ SKPLYVA
Sbjct: 310 KRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 396 LAQRKEERRARL----QAQFSQMRPPVGPRMPMYPPVA-------PGLGQQLFY 438
LAQRKE+RRA+L Q + +Q R PV +P P A P Q FY
Sbjct: 370 LAQRKEDRRAKLIEEHQQRLAQYRAPVASMIPAVPGHAAPHNYFPPAFQAQRFY 423
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +LYV + ++ +L ++F++ G++ S V +D + +S G+G+V Y
Sbjct: 186 ARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKD-NEGKSKGFGFVCYLDPDH 244
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------DPTIRKSGAG---------NIFIK 133
A A+ ++ + G R++Y R I K A N+++K
Sbjct: 245 AENAVRTMHGKEIEG---RVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVK 301
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD +ID+K L + FS G+I S KV D+ +S+G+GFV F N E A A+ +NG ++
Sbjct: 302 NLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTII 361
Query: 194 NDKQVFVGPFLRKQERES 211
K ++V RK++R +
Sbjct: 362 GSKPLYVALAQRKEDRRA 379
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/373 (57%), Positives = 279/373 (74%), Gaps = 6/373 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ S SLYVGDL+ +V ++ L+++F +G V S+RVCRD TRRSLGY YVN++ +A R
Sbjct: 7 YQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAER 66
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P RIM+S+RDP+IRKSG GNIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 67 ALDTLNYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILS 126
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKV TD G S+GYGFV ++ E+A SAI K+NG +LN K V+VG F+ ++ER +D
Sbjct: 127 CKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTPGSDPE 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+Y+KNL E TE+DLK+ FG FG + S +M+D + F FVNF+D + A R+
Sbjct: 187 KFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRAT 246
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNG+K DKE YVG+AQKK ERE L+ E E A K++G+NLY+KNLDD+++D+
Sbjct: 247 EELNGRKLGDKEVYVGRAQKKSERESFLRKLRE----ERAQKYQGINLYIKNLDDTVNDE 302
Query: 337 KLKELFSE--FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+L +LFS FG ITSCKVM D G SRG GFV ++ E+ASKA++EMNGKMV +KP+YV
Sbjct: 303 ELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYV 362
Query: 395 ALAQRKEERRARL 407
ALA+RK+ R A+L
Sbjct: 363 ALAERKDVRSAKL 375
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
A+++ +LY+ +LD +VND +L+ LF+ + GQ+ S +V D S G+G+V Y
Sbjct: 282 AQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSD-DKGNSRGFGFVCYTNP 340
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYR 118
+A++A+ E+N + KPI + + R
Sbjct: 341 EDASKAVSEMNGKMVANKPIYVALAER 367
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/403 (55%), Positives = 291/403 (72%), Gaps = 11/403 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHED 240
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 300
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 301 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 359
Query: 392 LYVALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q +R P + Y P P
Sbjct: 360 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPP 402
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/459 (50%), Positives = 299/459 (65%), Gaps = 48/459 (10%)
Query: 21 ATNGIANNGGV-GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
A G NGG+ A FVS SLYVGDL V ++ L+++FN +G V S+RVCRD TRR
Sbjct: 63 APAGQRPNGGMNAGAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRR 122
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVNY +A R+LD LN+T + G+P RIM+ +RDP++RKSG GNIF+KNLDK+I
Sbjct: 123 SLGYAYVNYQGIQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNI 182
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DNKAL+DTFS FGNILSCKVA D G S+GYGFV ++NEESA+SAIDK+NGML+ K V+
Sbjct: 183 DNKALYDTFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVY 242
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
VGPF+R+ ER++ A+ ++ NVY+KN+ S E L++ F +FG ITS V +D G
Sbjct: 243 VGPFIRRAERDNLAE-AKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRKDPKG-- 299
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDD----KE---------------------WYVGK 293
+ F F NF D D A +VEALNGK+ D KE +VG
Sbjct: 300 RLFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEEGQKREGDQILFVGP 359
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
Q K R L+ KFEQ ++ D+F+G+NLY+KN+DDSI D+KL++LF FG+ITS KV
Sbjct: 360 HQSKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKV 419
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
MRD G+SR GFV F + EEA+KA+TEM+ K+V KPLYV LA+R+E+R RLQ +F
Sbjct: 420 MRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRF-- 477
Query: 414 MRPPVGPRMPMYPPVAPGL---------GQQLFYGQGPP 443
R+P P A L QL YG G P
Sbjct: 478 -------RLPSLRPAAAALPGNVAAAAAAAQLQYGGGAP 509
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/382 (54%), Positives = 290/382 (75%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 39 SASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAI 98
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP +RK G+ NIFIKNL IDNKAL+DTFS FGNILS K
Sbjct: 99 EKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSSK 158
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+++ +AK AID LNGMLLN +++FVGP L ++ER+S ++++
Sbjct: 159 IATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKA 218
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN++ TT+++ ++F ++G + S A+ + DGK K FGFV+F++ +DAA++V
Sbjct: 219 NFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAV 278
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNG +F D+E +V +AQKKYER ELK ++E S E K++G+NL++KNLDDSI D+
Sbjct: 279 EELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDE 338
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE F+ +G ITS +VMR NG SRG GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 339 KLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 398
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L Q +QMR
Sbjct: 399 AQRKDVRRSQLAQQIQARNQMR 420
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 161/293 (54%), Gaps = 15/293 (5%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAK 182
++ + ++++ +LD S+ L+D FS G++ S +V D++ + S GY +V F++ E+ K
Sbjct: 36 ENSSASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGK 95
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI+KLN + + + +R+ K N+++KNL L F F
Sbjct: 96 KAIEKLNYTPIKGRLCRI----MWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVF 151
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G I S+ + D GKSK FGFV+F+D A +++ALNG + +E +VG + ER+
Sbjct: 152 GNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDS 211
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
+ L+E+ F N+YVKN++ +D++ ELFS++G + S + + +G +
Sbjct: 212 Q--------LEESKANF--TNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLK 261
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G GFV F E+A+KA+ E+NG + L+V+ AQ+K ER L+ Q+ R
Sbjct: 262 GFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASR 314
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L++ +LD S++D +L + F G + SVRV R +S G+G+V ++ EAT
Sbjct: 320 KYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMR-TENGKSRGFGFVCFSTPEEAT 378
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 379 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 417
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/376 (56%), Positives = 284/376 (75%), Gaps = 4/376 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN + ++ LK++F ++G S VM D+ GKS+ FGFV+F+ +DA ++VE
Sbjct: 190 FTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVE 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG + + K +VG+AQKK ER+ ELK KFE +E +++G+NLY+KNLDD+I D+K
Sbjct: 250 EINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ 413
QRKEER+A L Q+ Q
Sbjct: 369 QRKEERKAHLTNQYMQ 384
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN ++++ L + F +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TDS G+SRG+GFV F+ E A A++++NG LN K VFVG +K ER++
Sbjct: 218 LSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 278 RKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 164/289 (56%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K + E N+Y+KN D + D++LKE+F ++G S KVM D +G SRG GF
Sbjct: 186 KAK----------EFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A+KA+ E+NG + K ++V AQ+K ER+A L+ +F ++
Sbjct: 236 VSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLK 284
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + + D QL ++F + G+ +SV+V D S+ +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRGFGFVSFEKHED 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N T LNGK + R + I + N++IKNLD
Sbjct: 244 ANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 363 LYVALAQRKEER-----KAHLTNQYMQRIA 387
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/459 (49%), Positives = 300/459 (65%), Gaps = 61/459 (13%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 49 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 109 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 169 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+ T+++ +++FG++G ITS + RD GKS+ FGFVN+ D +A +V
Sbjct: 229 NFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D + DD
Sbjct: 289 DELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDD 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGI------------------------------------ 360
KL+ELFS FGTITS KVMRD G+
Sbjct: 349 KLRELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKAEDEEKT 408
Query: 361 ------------SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ R+++L+
Sbjct: 409 ETKKPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLE 468
Query: 409 AQFSQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
A Q R + P+ M P V G GQQ F
Sbjct: 469 ASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGF 506
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 157/297 (52%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 102 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 217
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+YVKN+D ++D++ +ELF ++G ITS + RD +
Sbjct: 218 DRQ----SKFEEM------KANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDS 267
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV + + A A+ E+N K S+ LYV AQ+K ER L+ Q+ R
Sbjct: 268 GKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAAR 324
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 281/375 (74%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK+ F ++G S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 MNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAHLTNQYMQ 384
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L +TFS +G
Sbjct: 158 MNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A+D +NG +N K +FVG +K ER++
Sbjct: 218 LSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAEL- 276
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK F
Sbjct: 277 KRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGF 335
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K + E N+Y+KN + + D++LKE FS++G S KVM DP+G S+G GF
Sbjct: 186 KAK----------EFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A+KA+ +MNGK V K ++V AQ+K ER+A L+ +F Q++
Sbjct: 236 VSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLK 284
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRI 386
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+ +A RALD
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DTFS FGNILSCKV
Sbjct: 79 TMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 138
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT--R 217
A D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F + R +T R
Sbjct: 139 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGETARR 198
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NV++KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV F++P+DA ++V
Sbjct: 199 FTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVN 258
Query: 278 ALNGKKFDDKE--WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
++ + D E YV +AQKK ER ELK ++EQ E +++G+NLYVKNLDD++ D
Sbjct: 259 EMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDD 318
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+ L++ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMNGKM+ +KPLYVA
Sbjct: 319 EVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 378
Query: 396 LAQRKEERRARLQAQFSQ 413
LAQRKE+R+A+L +Q+ Q
Sbjct: 379 LAQRKEDRKAQLASQYMQ 396
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 172/299 (57%), Gaps = 23/299 (7%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD S+++ +YD F+ G ++S +V D + S GYG+V++ A
Sbjct: 102 RRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESA 160
Query: 95 TRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTF 148
+A++++N L GK + + + R +R+ G N+FIKN +D + L F
Sbjct: 161 QKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGETARRFTNVFIKNFADELDKEKLEKLF 220
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND--KQVFVGPFLRK 206
+ FG I SC V +D+ G+S+G+GFV F+N E A+ A+++++ L D ++++V +K
Sbjct: 221 AKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLYVCRAQKK 280
Query: 207 QERESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
ER S K R+ N+YVKNL +T ++ L++ F +G ITS VM D
Sbjct: 281 NER-SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCD 339
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+G+SK FGFV F+ PD+A ++V +NGK K YV AQ+K +R+ +L ++ Q L
Sbjct: 340 DNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 398
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 162/291 (55%), Gaps = 17/291 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L + FS+ G +LS +V D++ + S GY +V F A+ A+D
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + ++ N+++KNL ++ + F FG I
Sbjct: 79 TMNFDVMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNIL 134
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D + SK +GFV+F+ + A +++E +NG + K+ YVGK Q + R E+
Sbjct: 135 SCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMG- 193
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
ETA +F N+++KN D + +KL++LF++FG ITSC VM D +G S+G GF
Sbjct: 194 -------ETARRF--TNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGF 244
Query: 367 VAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRKEERRARLQAQFSQMR 415
VAF E+A KA+ EM+ + + LYV AQ+K ER A L+ ++ Q +
Sbjct: 245 VAFENPEDAEKAVNEMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQK 295
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/431 (49%), Positives = 307/431 (71%), Gaps = 18/431 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V+++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 51 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERAL 110
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD +IDNKALHDTF+ FGN+LSCK
Sbjct: 111 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCK 170
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD +G+S+GYGFV ++ E+A+SAI +NGMLLNDK+V+VG + K++R++ D K
Sbjct: 171 VATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKK 230
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F NVYVKN+ +D+ +++F FG +TS + RD +G+S+ FGFVNF+ ++A ++V
Sbjct: 231 QFTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAV 290
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ F ++ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D + D+
Sbjct: 291 DTLHDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDE 350
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL++ F FG ITS KVMR G S+G GFV FS+ +EA+KA+ EMN KM+ SKPLYV+L
Sbjct: 351 KLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSL 410
Query: 397 AQRKEERRARLQAQFSQ-----MRPPVGPRMP---MYPPV-------APGLGQQLFYGQG 441
AQR+E RR +L++Q +Q M+ MP M PP+ P G+ YGQ
Sbjct: 411 AQRREVRRQQLESQIAQRNQIRMQQAAAAGMPAGYMNPPMYYPGPGFPPPAGRGFGYGQ- 469
Query: 442 PPIIPPQVIYS 452
P ++PP+ Y+
Sbjct: 470 PGMMPPRPRYA 480
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/414 (50%), Positives = 304/414 (73%), Gaps = 5/414 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ SLYVG+L+ S+N++ L+++F+ +GQV S+RVCRD T+RSLGY YVNY+ + +A
Sbjct: 58 TTASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+DELN++ + G+PIRIM+S RDP R++G GN+FIKNL +IDNKALHDTFS FG ILSC
Sbjct: 118 IDELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT- 216
KVATD+ GQS+G+GFV F++ E+A++AI+ +NGMLLN+ +V+VGP + +++R+S ++
Sbjct: 178 KVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEEVI 237
Query: 217 -RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN+ +E+++K++F FG +TS + +DA+GKS+ F FVN+++ + A +S
Sbjct: 238 KSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKS 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+E+LN + + K+ YVG+AQKK ER ELK ++E + E K +G+NL+VKNLDDSI D
Sbjct: 298 IESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KLKE F FGTI+S KVM D +G S+G GFV+FS+ EEAS+A++EMN M+ KPLYVA
Sbjct: 358 EKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVA 417
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPG--LGQQLFYGQGPPIIPP 447
LAQRK+ RR++L+ Q Q R + + PG + YGQ P +PP
Sbjct: 418 LAQRKDVRRSQLEQQI-QARNQLRLQQAAAAGGLPGQFIPTPFIYGQQPQFLPP 470
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/395 (55%), Positives = 284/395 (71%), Gaps = 17/395 (4%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+ VCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 AT-------------RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSID
Sbjct: 65 VMPTSTSSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID 124
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
NKAL+DTFS FGNILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFV
Sbjct: 125 NKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 183
Query: 201 GPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
G F ++ERE+ A F NVY+KN E ++ LK++F +FG S VMRD GKS
Sbjct: 184 GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS 243
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
K FGFV+++ +DA ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +
Sbjct: 244 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 303
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA
Sbjct: 304 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKA 362
Query: 379 LTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+TEMNG++V SKPLYVALAQRKEER+A L Q+ Q
Sbjct: 363 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 397
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/381 (53%), Positives = 285/381 (74%), Gaps = 6/381 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 43 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 102
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCK
Sbjct: 103 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 162
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ----ERESTAD 214
VATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ ER+S +
Sbjct: 163 VATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLE 222
Query: 215 --KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
K +F N+YVKNL T+DD K+F +FG +TS + D G+S+ FGFVNF+ ++A
Sbjct: 223 EMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEA 282
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
++VE L+ ++ ++ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D
Sbjct: 283 QKAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDD 342
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I D++L++ F FG+ITS KVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ SKPL
Sbjct: 343 IDDERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPL 402
Query: 393 YVALAQRKEERRARLQAQFSQ 413
YV+LAQR+E RR +L++Q +Q
Sbjct: 403 YVSLAQRREVRRQQLESQIAQ 423
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/415 (53%), Positives = 290/415 (69%), Gaps = 15/415 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYP-------PVAPGLGQQLFYGQGP 442
RKEER+A L Q+ Q MR GP + + P P + FY P
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPNP 424
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/385 (57%), Positives = 284/385 (73%), Gaps = 5/385 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM 422
QRKEER+A L +Q+ MR G RM
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRM 385
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/380 (56%), Positives = 288/380 (75%), Gaps = 3/380 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL+ V ++ L++ F+Q G V+S+RVCRDL TRRSLGY YVN+ +A RA+D
Sbjct: 12 SLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAIDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ P+ G+P RIM+S RDPT+R+SG GNIFIKNLDK+IDNK L+D FS FGNILSCK+A
Sbjct: 72 MNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFGNILSCKIA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKT-RF 218
DS SRGYGFV ++ +E+A AI K+NGM+LNDK+VFVG F+ K+ER E D+ +F
Sbjct: 132 VDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQAKKF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN ++ E+ LK++FG+ G ITS VM ++ GKSK FGFV F+ P+ A +V
Sbjct: 192 KNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAES-GKSKGFGFVAFEAPEAAEAAVNE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG + + ++ V +AQKK ER MELK +FE E ++++G+NLY+KNL+D + D++L
Sbjct: 251 LNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKNLEDGLDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS +GTITS KVM+D GIS+G GFV FS+ +EA+KA+TEMNG+++V+KPLYVALAQ
Sbjct: 311 RSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYVALAQ 370
Query: 399 RKEERRARLQAQFSQMRPPV 418
RKEERRA+L QF Q P+
Sbjct: 371 RKEERRAQLSTQFLQRVNPL 390
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 17/199 (8%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ST ++YV +L+ TE L + F + G + S V RD +S + +VNF
Sbjct: 2 QSTTQNYPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQ 61
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
P DA R+++ +N + + +Q+ + +L+ + N+++KN
Sbjct: 62 PADAERAIDTMNYDPIKGRPCRIMWSQR------------DPTLRRSGVG----NIFIKN 105
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD +I + L + FS FG I SCK+ D +SRG GFV + T E A +A+ ++NG M+
Sbjct: 106 LDKNIDNKGLYDAFSAFGNILSCKIAVDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLN 165
Query: 389 SKPLYVALAQRKEERRARL 407
K ++V K ER +L
Sbjct: 166 DKKVFVGEFMSKRERLEKL 184
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFS 370
++ T + +LYV +L+ +++ L E FS+ G + S +V RD S G +V F
Sbjct: 1 MQSTTQNYPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQ 60
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQR 399
+A +A+ MN + +P + +QR
Sbjct: 61 QPADAERAIDTMNYDPIKGRPCRIMWSQR 89
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/375 (56%), Positives = 281/375 (74%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 73 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 132
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 133 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + + LK++F ++G S VM D GKS+ FGFV+++ +DA ++VE
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEE 251
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 252 MNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 311
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 312 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 370
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 371 RKEERKAHLTNQYMQ 385
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 101 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 158
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + F +G
Sbjct: 159 MNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKT 218
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+SRG+GFV ++ E A A++++NG LN K VFVG +K ER++
Sbjct: 219 LSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 278
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK FG
Sbjct: 279 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFG 337
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 338 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 387
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 164/289 (56%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 72 TMNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 127
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE E+
Sbjct: 128 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGA 186
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K + E N+Y+KN D + D +LKELF ++G S KVM DP G SRG GF
Sbjct: 187 KAK----------EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGF 236
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V++ E+A+KA+ EMNG + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 VSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLK 285
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/420 (52%), Positives = 296/420 (70%), Gaps = 17/420 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ +E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L++IF FG S VM D G+SK FGFVNF+ ++A ++V
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRM------PMY--PPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR GP + P Y PP+ + FY P++P
Sbjct: 370 RKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQPRAAFYSPS-PVVP 428
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/385 (57%), Positives = 284/385 (73%), Gaps = 5/385 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM 422
QRKEER+A L +Q+ MR G RM
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRM 385
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/420 (52%), Positives = 295/420 (70%), Gaps = 17/420 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ +E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L++IF FG S VM D G+SK FGFVNF+ ++A ++V
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRM------PMY--PPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR GP + P Y PP+ + FY P++P
Sbjct: 370 RKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQTRAAFYSPS-PVVP 428
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/405 (53%), Positives = 292/405 (72%), Gaps = 7/405 (1%)
Query: 10 APVAVAAQPSPATNGI-ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
AP A + +PA + ANN V S SLYVG+LD SV+++ LYD+F+ +G V S
Sbjct: 23 APAASETEGTPAASETEANNSNVDT----TSASLYVGELDPSVSEALLYDIFSPIGPVTS 78
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD T+ SLGY YVN+N A+++LN++P+ GKP RIM+S RDP +RK GAG
Sbjct: 79 IRVCRDAITKTSLGYAYVNFNDHESGRTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAG 138
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
NIFIKNL IDNKALHDTFS FGNILSCK+ATD G+S+G+GFV F+ + +A A+D +
Sbjct: 139 NIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAI 198
Query: 189 NGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NGM+LN ++V+V + K++RES + K F NVYVKN+ T ED+ +F ++G IT
Sbjct: 199 NGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPIT 258
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S A+ +D++GK + FGF+NF++ DDAA++VE LN +F ++ YVG+AQKKYER ELK
Sbjct: 259 SIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELKK 318
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
++E S E K++G+NL+VKNLDDSI D+KL+ F+ FG+ITS KVMR+ G S+ GF
Sbjct: 319 QYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGF 378
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
V FST EEA+KA+TE N ++V KPLYVA+AQRK+ RR++L Q
Sbjct: 379 VCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 423
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/461 (49%), Positives = 309/461 (67%), Gaps = 56/461 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKAL 122
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 182
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 183 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 242
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ TE++ +++F ++G +TS+++ RD +GKS+ FGFVNF AA++V
Sbjct: 243 NFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAV 302
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F +E YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + DD
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDD 362
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSEFG ITS KVMRD
Sbjct: 363 KLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKK 422
Query: 359 -----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
G S+G GFV FS ++A+KA+ EMN +MV KPLYVALAQRK+ R+++L+A Q
Sbjct: 423 VERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEASI-Q 481
Query: 414 MRPPVGPRMPMYPPVAPGLGQQ-----LFY--GQGPPIIPP 447
R + RM A GL QQ ++Y GQ P +PP
Sbjct: 482 ARNQL--RMQQAAAQA-GLPQQYMQAPVYYAPGQQPGFLPP 519
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/385 (56%), Positives = 285/385 (74%), Gaps = 5/385 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM 422
QRKEER+A L +Q+ MR G RM
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRM 385
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/422 (53%), Positives = 294/422 (69%), Gaps = 17/422 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ER E A F
Sbjct: 132 CDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD+ G+S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y +AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D KL
Sbjct: 251 MNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR P +G P P V Q +YG G P+ P
Sbjct: 370 RKEERKAILTNQYMQRVSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 428
Query: 447 PQ 448
Q
Sbjct: 429 TQ 430
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 31/218 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L V++ L DLF+Q G+++SV+V RD S+ RS +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-SSGRSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y+ R D R G N+++K
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID+ L FS +G I S KV T+ S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDGKLRKEFSPYGVITSAKVMTEG-SHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ +S T
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRVSTMRT 391
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/457 (49%), Positives = 300/457 (65%), Gaps = 59/457 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 49 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 109 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 169 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+ T+++ +++FG+FG ITS + RD GKS+ FGFVN+ D ++A +V
Sbjct: 229 NFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D + D+
Sbjct: 289 DDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDE 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGI------------------------------------ 360
KL+ELFS FGTITS KVMRD G
Sbjct: 349 KLRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDA 408
Query: 361 ----------SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410
S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 409 KKSDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEAS 468
Query: 411 FSQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
Q R + P+ M P V G GQQ F
Sbjct: 469 I-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGF 504
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 156/297 (52%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 102 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 217
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+YVKN+D ++D++ +ELF +FG ITS + RD +
Sbjct: 218 DRQ----SKFEEM------KANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDS 267
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV + E A A+ ++N K + LYV AQ+K ER L+ Q+ R
Sbjct: 268 GKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAAR 324
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/428 (52%), Positives = 301/428 (70%), Gaps = 15/428 (3%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ L++ F+ G VVS+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 ASLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF L G+PIRIM+S RDP++R+SG GNIFIKNLDK+IDNKA++DTFS FGNILSCKV
Sbjct: 72 SMNFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE-STADKTR- 217
A D G S+GYGFV F+ EESA +AI K+NGMLLN K+VFVG F+ +++RE +K +
Sbjct: 132 AQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFIPRKDRERELGEKAKY 191
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN + ++ L + F ++G +TS VM DGKS+ FGFV ++DPD A R+ +
Sbjct: 192 FTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACD 251
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
++ K + K +VG+AQK+ ER+ EL+ KFEQ E ++++G+NLYVKNLDD+I D++
Sbjct: 252 DMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVNLYVKNLDDTIDDER 311
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F+ +GTITS KVM + G GFV FS+ EEA+KA+TEMNG+++VSKPLYVALA
Sbjct: 312 LRKEFAPYGTITSAKVMTEGGRNKGGFGFVCFSSPEEATKAVTEMNGRILVSKPLYVALA 371
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPPQVIYSF 453
QRKE+R+A+L +Q+ M+ G RM M+ P PG P I PQ Y+
Sbjct: 372 QRKEDRKAQLASQY--MQRMAGMRMQQMGQMFQPGGPGYFM-------PAPIQPQRFYTP 422
Query: 454 LLIDYFNA 461
+ F A
Sbjct: 423 AQMAQFRA 430
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F G + S +V + R G+G+V +++ EAT
Sbjct: 292 RYQGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMTE-GGRNKGGFGFVCFSSPEEAT 350
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N L KP+ + + R
Sbjct: 351 KAVTEMNGRILVSKPLYVALAQR 373
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/405 (54%), Positives = 290/405 (71%), Gaps = 6/405 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL ++ LYD F+Q G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPED 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RA+D +NF L GK IRIM+S RDP +RKSG GNIFIKNLDK+IDNK L+DTFS FGN
Sbjct: 65 AERAIDTMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-EST 212
ILSCKV + G+S+GYGFV F+ EE+A AI+KL+GML+NDK+VFVG F + ER
Sbjct: 125 ILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREY 184
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
D+ + F NV++KNL + L ++FGE G + S A+ D +GKS+ FGFV+F+ +
Sbjct: 185 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHEC 244
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A + VE L+ K+F+ K+ +VG+AQKK ER+ ELK KFE+ E +++G+NLYVKNLDD
Sbjct: 245 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDD 304
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN---GISRGSGFVAFSTAEEASKALTEMNGKMVV 388
SI+DD L+E F+ +G ITS KVM D + S+G GFV F++AEEA+KA+TEMNG+++
Sbjct: 305 SITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 364
Query: 389 SKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLG 433
SKPLYVALAQRK+ER+A LQ Q+ Q R G R+ +P P G
Sbjct: 365 SKPLYVALAQRKDERKAHLQQQYMQ-RVTTGMRLQAFPTNQPQYG 408
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/429 (51%), Positives = 296/429 (68%), Gaps = 18/429 (4%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A
Sbjct: 7 EYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAE 66
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FG+IL
Sbjct: 67 RALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDIL 126
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A
Sbjct: 127 SCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGA 185
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E + LK+IF FG S VM D G+S+ FGFVN+ + ++A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQ 245
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V +NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I
Sbjct: 246 KAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGI 305
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DD+L++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 306 DDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 394 VALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYP-------PVAPGLGQQLFYGQGP 442
VALAQRKEER+A L Q+ Q MR GP + + P P + FY P
Sbjct: 365 VALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNP 424
Query: 443 --PIIP-PQ 448
P+ P PQ
Sbjct: 425 VAPVRPAPQ 433
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/385 (57%), Positives = 283/385 (73%), Gaps = 5/385 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM 422
QRKEER+A L +Q+ MR G RM
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRM 385
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/376 (56%), Positives = 280/376 (74%), Gaps = 4/376 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDK
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ 413
QRKEER+A L Q+ Q
Sbjct: 369 QRKEERKAILTNQYMQ 384
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 160/296 (54%), Gaps = 20/296 (6%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
SG+G ++++ +L + L++ FS G ILS +V D + +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N +L + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I S V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL A E N+YVKNL + + L++LFS+FG + S KVMRD +G
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
SR GFV F EEA KA+ MNGK V + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 163/292 (55%), Gaps = 25/292 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +L+ S+++ LYD F+ G ++S +V D R G+G+V++ A +A++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINT 157
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGN 153
+N LN + + + + ++ R++ G NI++KNL +D + L D FS FG
Sbjct: 158 MNGMLLNDRKVFVGH-FKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGK 216
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
+LS KV D+ G SR +GFV F+ E A+ A+ +NG ++ + ++ G ++ ER++
Sbjct: 217 MLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL 276
Query: 214 DKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
K RF N+YVKNL ++ +D L+K F +G+ITS VM + G SK
Sbjct: 277 -KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKG 334
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FGFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 118/217 (54%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER++ N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEERKAI-----LTNQYMQRLSTMRT 391
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/395 (53%), Positives = 284/395 (71%), Gaps = 5/395 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ L G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+Y+KN T + LK++F EFG I S VM+D++GKSK FGFV F DPD A +V
Sbjct: 190 KFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-GLNLYVKNLDDSISD 335
+ ++GK+ + + Y +AQ+K ER+ ELK + E+ E + +NLYVKNLDD+I D
Sbjct: 250 KTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDD 309
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+L+E FS G+ITS KVM+D N S+G GFV F+ E+A++A+T+MNG ++ SKPLYVA
Sbjct: 310 KRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 396 LAQRKEERRARL----QAQFSQMRPPVGPRMPMYP 426
LAQRKE+RRA+L Q + +Q R PV +P P
Sbjct: 370 LAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVP 404
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +LY+ + ++ +L ++FN+ G++ S V +D S +S G+G+V +
Sbjct: 186 ARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDH 244
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPT--------IRKSGAG---------NIFIKNLD 136
A A+ ++ + G+ + + R + K A N+++KNLD
Sbjct: 245 AENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLD 304
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ID+K L + FS G+I S KV D+ +S+G+GFV F N E A A+ +NG ++ K
Sbjct: 305 DNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Query: 197 QVFVGPFLRKQERES 211
++V RK++R +
Sbjct: 365 PLYVALAQRKEDRRA 379
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/381 (56%), Positives = 282/381 (74%), Gaps = 8/381 (2%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD +NF + GKP+RIM+
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F
Sbjct: 62 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++
Sbjct: 121 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 180
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+
Sbjct: 181 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 240
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KV
Sbjct: 241 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 300
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
M + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 301 MME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 359
Query: 414 ----MRPPVGPRMPMYPPVAP 430
+R P + Y P P
Sbjct: 360 RMASVRAVPNPVINPYQPAPP 380
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 75 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 132
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 133 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 192
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 193 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 252
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 253 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 311
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 312 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 361
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 162 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 218
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 219 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 277
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 278 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 336
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 337 PLYVALAQRKEERQA-----HLTNQYMQRMA 362
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/415 (50%), Positives = 290/415 (69%), Gaps = 43/415 (10%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 58 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 118 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 237
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+++ +++F +FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
DKL+ +FSE+G ITS KVMRD
Sbjct: 358 DKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKG 417
Query: 358 ---NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 418 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 472
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 161/290 (55%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT N+++KNL L F FG I
Sbjct: 119 EELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNI 174
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 175 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 230
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+++ ++D++ +ELF++FG +TS + RD G SRG G
Sbjct: 231 SKFEEM------KANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFG 284
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 285 FVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 166/334 (49%), Gaps = 60/334 (17%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A
Sbjct: 143 RKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAA 201
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
++A+ +N LN K + + + +D + K+ N+++KN++ + ++ + F
Sbjct: 202 SQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELF 261
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
+ FG + S +A D G+SRG+GFV F E+A A+D+LNG + ++VG +K E
Sbjct: 262 AKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHE 321
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD- 255
RE A+K + N+Y+KNL + +D L+ +F E+G ITS VMRD+
Sbjct: 322 REEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLI 381
Query: 256 ----------------------------------------GKSKCFGFVNFDDPDDAARS 275
GKSK FGFV F +PDDA ++
Sbjct: 382 EGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKA 441
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V +N + D K YV AQ+K R+ +L+ +
Sbjct: 442 VTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQ 475
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/377 (53%), Positives = 284/377 (75%), Gaps = 2/377 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V+++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 48 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD++IDNKALHDTF+ FGN+LSCK
Sbjct: 108 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 167
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
VATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + K+ER+S D+ R
Sbjct: 168 VATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRA 227
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKNL + ++ ++F +FG +TS + D +G SK FGFVNF+ ++A +V
Sbjct: 228 QFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAV 287
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ +++ ++ +V +AQKK ERE EL+ +E + E K++G+NLY+KNLDD I D+
Sbjct: 288 DGLHDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDE 347
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L+ F FGTITS KVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 348 RLRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSL 407
Query: 397 AQRKEERRARLQAQFSQ 413
AQR+E RR +L++Q +Q
Sbjct: 408 AQRREVRRQQLESQIAQ 424
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/376 (59%), Positives = 288/376 (76%), Gaps = 5/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+
Sbjct: 77 MNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIV 136
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
D G SRGYGFV F+ EE+A+ AI+K+NGMLLN K+VFVG F+ ++ER E DK R F
Sbjct: 137 CDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKF 195
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR-DADGKSKCFGFVNFDDPDDAARSVE 277
NNVYVKN SE ++ L+ +F +G I S VM D GK K FGFV+F+DP+ A ++VE
Sbjct: 196 NNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVE 255
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
ALNG K YVG+AQKK ER+ ELK KFE+ E ++++G+NLYVKNLDD+I D++
Sbjct: 256 ALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDER 315
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F++FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++VV+KPLYVALA
Sbjct: 316 LRKEFAQFGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALA 374
Query: 398 QRKEERRARLQAQFSQ 413
QRKE+R+A L +Q+ Q
Sbjct: 375 QRKEDRKAHLASQYMQ 390
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 173/304 (56%), Gaps = 26/304 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S + VC + +R GYG+V++ A A++
Sbjct: 105 NVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHGSR---GYGFVHFETEEAARIAIE 161
Query: 100 ELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGN 153
++N LNGK + + + R + G N+++KN + I+++ L D F +G
Sbjct: 162 KVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGK 221
Query: 154 ILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I+S KV TD G+ +G+GFV F++ E+A+ A++ LNG + K ++VG +K ER++
Sbjct: 222 IISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAE 281
Query: 213 ADKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
+ R N N+YVKNL + ++ L+K F +FG ITS VM + G+SK
Sbjct: 282 LKEKFERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEG-GRSKG 340
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
FGFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q + T+ + +
Sbjct: 341 FGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLASQYMQRI--TSMRMQ 398
Query: 321 GLNL 324
G +
Sbjct: 399 GQQI 402
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 154/290 (53%), Gaps = 19/290 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L + FST G +LS +V D + + S GY +V F A+ A+D
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + + + +R+ + K+ NV++KNL ++ L F FG I S
Sbjct: 77 MNFDTIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
++ D G S+ +GFV+F+ + A ++E +NG + K+ +VG+ + ER
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRER------- 184
Query: 308 FEQSLKETADKFEGLN-LYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSG 365
L+ DK N +YVKN + I+D+ L+++F +G I S KVM D +G +G G
Sbjct: 185 ----LEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFG 240
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV+F E A KA+ +NG K LYV AQ+K ER+A L+ +F ++R
Sbjct: 241 FVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIR 290
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F Q G + S +V + RS G+G+V +++ EAT
Sbjct: 296 RYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEGG--RSKGFGFVCFSSPEEAT 353
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 354 KAVTEMNGRIVVAKPLYVALAQR 376
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/374 (55%), Positives = 287/374 (76%), Gaps = 4/374 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +R+SG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F +Q+RE+ A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG S VMRD++G+S+ FGF+NF+ ++A ++V+
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDDSI+DD+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
LKE+FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQF 411
QRKEER+A L Q+
Sbjct: 369 QRKEERKAILTNQY 382
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +L+ S+++ LYD F+ G ++S +V + R G+G+V++ A +A++
Sbjct: 100 NIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKAINT 157
Query: 101 LNFTPLNGKPIRIMY----SYRDPTI--RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R+ + R G NI++KNL +D + L D FS FG
Sbjct: 158 MNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S KV DS GQSRG+GF+ F+ E A+ A+D +NG ++ + ++VG ++ ER++
Sbjct: 218 QSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNEL- 276
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+YVKNL ++ +D LK++F +G+ITS VM ++ SK F
Sbjct: 277 KRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS-HSKGF 335
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ + L +
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRS 389
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 158/288 (54%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS +V D + +S GY ++ F A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ + + + R+ ++ N+++KNL + L F FG I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ V+ + G S+ FGFV+F+ + A +++ +NG +D++ +VG + + +RE EL +
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A F N+YVKNL + + L++LFS+FG S KVMRD NG SRG GF+
Sbjct: 187 --------ALGF--TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFI 236
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
F EEA KA+ MNGK V + LYV AQ++ ER+ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMK 284
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 25/213 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + +++ L DLF+Q G+ SV+V RD S +S G+G++N+ E
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+D +N ++G+ + R ++ R G N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SI++ L + FST+G I S KV T+S S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSINDDRLKEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
++V RK+ER K N Y + LS +
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYRRRLSRS 389
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/395 (53%), Positives = 284/395 (71%), Gaps = 5/395 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ L G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+Y+KN T + LK++F EFG I S VM+D++GKSK FGFV F DPD A +V
Sbjct: 190 KFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-GLNLYVKNLDDSISD 335
+ ++GK+ + + Y +AQ+K ER+ ELK + E+ E + +NLYVKNLDD+I D
Sbjct: 250 KTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDD 309
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+L+E FS G+ITS KVM+D N S+G GFV F+ E+A++A+T+MNG ++ SKPLYVA
Sbjct: 310 KRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 396 LAQRKEERRARL----QAQFSQMRPPVGPRMPMYP 426
LAQRKE+RRA+L Q + +Q R PV +P P
Sbjct: 370 LAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVP 404
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +LY+ + ++ +L ++FN+ G++ S V +D S +S G+G+V +
Sbjct: 186 ARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDH 244
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPT--------IRKSGAG---------NIFIKNLD 136
A A+ ++ + G+ + + R + K A N+++KNLD
Sbjct: 245 AENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLD 304
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ID+K L + FS G+I S KV D+ +S+G+GFV F N E A A+ +NG ++ K
Sbjct: 305 DNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Query: 197 QVFVGPFLRKQERES 211
++V RK++R +
Sbjct: 365 PLYVALAQRKEDRRA 379
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/395 (53%), Positives = 284/395 (71%), Gaps = 5/395 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ L G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+Y+KN T + LK++F EFG I S VM+D++GKSK FGFV F DPD A +V
Sbjct: 190 KFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-GLNLYVKNLDDSISD 335
+ ++GK+ + + Y +AQ+K ER+ ELK + E+ E + +NLYVKNLDD+I D
Sbjct: 250 KTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDD 309
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+L+E FS G+ITS KVM+D N S+G GFV F+ E+A++A+T+MNG ++ SKPLYVA
Sbjct: 310 KRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVA 369
Query: 396 LAQRKEERRARL----QAQFSQMRPPVGPRMPMYP 426
LAQRKE+RRA+L Q + +Q R PV +P P
Sbjct: 370 LAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAVP 404
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +LY+ + ++ +L ++FN+ G++ S V +D S +S G+G+V +
Sbjct: 186 ARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKD-SEGKSKGFGFVCFLDPDH 244
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPT--------IRKSGAG---------NIFIKNLD 136
A A+ ++ + G+ + + R + K A N+++KNLD
Sbjct: 245 AENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLD 304
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ID+K L + FS G+I S KV D+ +S+G+GFV F N E A A+ +NG ++ K
Sbjct: 305 DNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSK 364
Query: 197 QVFVGPFLRKQERES 211
++V RK++R +
Sbjct: 365 PLYVALAQRKEDRRA 379
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/414 (50%), Positives = 290/414 (70%), Gaps = 42/414 (10%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 58 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 118 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 237
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+++ +++F +FG +TS+++ RD +GK++ FGFVNF + AA++
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQA 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
DKL+ +FSE+G ITS KVMRD
Sbjct: 358 DKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGD 417
Query: 358 --NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 418 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 471
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 161/290 (55%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT N+++KNL L F FG I
Sbjct: 119 EELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNI 174
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 175 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 230
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+++ ++D++ +ELF++FG +TS + RD G +RG G
Sbjct: 231 SKFEEM------KANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFG 284
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 285 FVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 166/333 (49%), Gaps = 59/333 (17%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A
Sbjct: 143 RKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAA 201
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
++A+ +N LN K + + + +D + K+ N+++KN++ + ++ + F
Sbjct: 202 SQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELF 261
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
+ FG + S +A D G++RG+GFV F E+A A+D+LNG + ++VG +K E
Sbjct: 262 AKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHE 321
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD- 255
RE A+K + N+Y+KNL + +D L+ +F E+G ITS VMRD+
Sbjct: 322 REEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLI 381
Query: 256 ---------------------------------------GKSKCFGFVNFDDPDDAARSV 276
GKSK FGFV F +PDDA ++V
Sbjct: 382 EGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAV 441
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+N + D K YV AQ+K R+ +L+ +
Sbjct: 442 TEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQ 474
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/377 (53%), Positives = 280/377 (74%), Gaps = 2/377 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 41 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 100
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + + RIM+S RDP +RK+G GN+FIKNLD++IDNKALHDTF FGN+LSCK
Sbjct: 101 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCK 160
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G+S+GYGFV ++ E+A +AI +NGMLLNDK+V+VG + ++ER+S D K
Sbjct: 161 VATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKA 220
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+Y+KNL T+++ ++F +G +TS+ V D +GKSK FGFVN++ ++A R+V
Sbjct: 221 QFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAV 280
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D DD
Sbjct: 281 DELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDD 340
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FG ITSCKVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 341 KLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 400
Query: 397 AQRKEERRARLQAQFSQ 413
AQR+E RR +L++Q +Q
Sbjct: 401 AQRREVRRQQLESQIAQ 417
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/424 (51%), Positives = 304/424 (71%), Gaps = 24/424 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T SLGY YVN++ +A+++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+T + GKP RIM+S RDP++RK G+GNI+IKNL +IDNK+LH+TFSTFGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G SRG+GFV F+NE A+ AI+ ++GML+ND++V+V + K++R+S + K +F
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN+ + T++++ +++FG++G ITS + +D++GK + FGFVNF+D AA++V+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN +F ++ YVG+AQKKYER ELK ++E + E K++G+NL+VKNLDDSI D+KL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE F+ FGTITS KVMRD G SRG GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 399 RKEERRARLQAQF---SQMR----------PPVG-PRMPMYPPVAPGLGQQLFYGQGPPI 444
RKE RR +L Q +QMR G P M PP ++YG PP
Sbjct: 399 RKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPP--------MYYGGIPPR 450
Query: 445 IPPQ 448
+P Q
Sbjct: 451 VPFQ 454
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNF 266
E E+ +T ++YV L T +E L IF G ++S V RDA S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
D + +++E LN K + +Q+ + SL++ N+Y+
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQR------------DPSLRKKGSG----NIYI 130
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL +I + L E FS FG I SCKV D NG+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
+ + +YVAL K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++D + + +LF + G++ S + +D S + G+G+VN+ A +A+D
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 100 ELNFTPLNGKPI---RIMYSY-------------RDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN G+ + R Y R + K N+F+KNLD SID++
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F+ FG I S KV D G SRG+GFV F E A AI + N ++ K ++V
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 204 LRKQER 209
RK+ R
Sbjct: 398 QRKEVR 403
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD S++D +L + F G + S +V RD T S G+G+V ++ EAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEAT 376
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARN 415
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/377 (53%), Positives = 282/377 (74%), Gaps = 2/377 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 6 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 65
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCK
Sbjct: 66 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 126 VATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKN 185
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN+ T+++ ++F FG ITS + D +GKS+ FGFVNFD ++A +V
Sbjct: 186 QFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAV 245
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EAL+ ++ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D I D+
Sbjct: 246 EALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDE 305
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L+ F FG ITS KVMRD GIS+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 306 RLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 365
Query: 397 AQRKEERRARLQAQFSQ 413
AQR+E RR +L++Q +Q
Sbjct: 366 AQRREVRRQQLESQIAQ 382
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/377 (56%), Positives = 281/377 (74%), Gaps = 5/377 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLY+GDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++R+SG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKARE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEF-GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN + ++ L++ F ++ G S VM D GKSK FGFV+F+ +DA ++V
Sbjct: 190 FTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ +N K+ + + YVG+AQKK ER+ ELK KFE +E K++G+NLYVKNLDD+I+D+
Sbjct: 250 DEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDE 309
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L + FS FGTITS KVM + G SRG GFV FS+ EEA+KA+TEMNG+++ SKPLYVAL
Sbjct: 310 RLWKEFSPFGTITSAKVMME-EGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 368
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKEER+ L +QF Q
Sbjct: 369 AQRKEERKMHLTSQFMQ 385
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 164/292 (56%), Gaps = 24/292 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A +A+++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAADKAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTF-GN 153
+N LN + + + + R + GA N++IKN +D++ L + F + G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAEFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGK 217
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
LS KV D G+S+G+GFV F+ E A+ A+D++N LN + ++VG +K ER+ T
Sbjct: 218 TLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQ-TE 276
Query: 214 DKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
K +F N+YVKNL + ++ L K F FG ITS VM + +G+S+
Sbjct: 277 LKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMME-EGRSRG 335
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FGFV F P++A ++V +NG+ K YV AQ+K ER+M L +F Q L
Sbjct: 336 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEERKMHLTSQFMQRL 387
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 161/290 (55%), Gaps = 17/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
+++I +L + L++ FS G ILS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + ++ N+++KNL ++ L F FG I
Sbjct: 71 TMNFDVVKGKPIRI----MWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ + A +++E +NG +D++ +VG+ + + ERE E
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF-GTITSCKVMRDPNGISRGSG 365
K A +F N+Y+KN D + D++L+E F ++ G S KVM D G S+G G
Sbjct: 186 K--------AREF--TNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFG 235
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV+F E+A KA+ EMN K + + +YV AQ+K ER+ L+ +F ++
Sbjct: 236 FVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLK 285
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++ND +L+ F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 291 KYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVM--MEEGRSRGFGFVCFSSPEEAT 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 349 KAVTEMNGRIIGSKPLYVALAQR 371
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/379 (55%), Positives = 281/379 (74%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG GNIF+KNLDKSI+NK L+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NG LLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L Q+ Q
Sbjct: 366 ALAQRKEERQAHLTNQYMQ 384
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/457 (47%), Positives = 307/457 (67%), Gaps = 57/457 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A+ AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN++ ++D+ +++F +G ITS+++ RD DGKS+ FGFVN+ + A ++V
Sbjct: 238 NFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + D+
Sbjct: 298 DELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDE 357
Query: 337 KLKELFSEFGTITSCKVMRD-PN------------------------------------- 358
KL+ +FSEFG ITS KVMRD P+
Sbjct: 358 KLRHMFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKF 417
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
G S+G GFV FS ++A+KA+ EM+ +M+ KPLYVALAQRK+ R+++L+A +Q+R
Sbjct: 418 GKSKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKDVRKSQLEASIQARNQLR 477
Query: 416 PPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
P+ M PPV FYGQ P +P
Sbjct: 478 MQQAAAAAGMPQQYMQPPV--------FYGQQPGFMP 506
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/273 (75%), Positives = 241/273 (88%), Gaps = 5/273 (1%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
+ D EE+A +AI+KLNGMLLNDK+VFVGPFLRKQ+RE+TA+ T+FNNV+VKNLSE+TTE
Sbjct: 1 IYVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTE 60
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
D+L +IFGE+G ITS VMR+ DGKSKCFGFVNF+DP+ AA++V+ LNGKKFD KEWYVG
Sbjct: 61 DNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVG 120
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
KAQKK EREMELKG+FEQ ++E ADK +G NLY+KNLDDSI DDKL+ELFSEFG+ITSCK
Sbjct: 121 KAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCK 180
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412
VMRDPNG+SRGSGFVAF + ++ASKAL EMNGKM+ SKPLYVALAQRKE+RRARLQAQFS
Sbjct: 181 VMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFS 240
Query: 413 QMR-----PPVGPRMPMYPPVAPGLGQQLFYGQ 440
QMR P V PR+PMYP APG+GQQLFYGQ
Sbjct: 241 QMRPVAIPPSVAPRVPMYPAGAPGMGQQLFYGQ 273
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 131/237 (55%), Gaps = 19/237 (8%)
Query: 90 AAHEATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
AAH A +++LN LN K + + R+ T + N+F+KNL +S L
Sbjct: 8 AAHNA---IEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTEDNLL 64
Query: 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205
+ F +GNI S V + G+S+ +GFV F++ E A A+ +LNG + K+ +VG +
Sbjct: 65 EIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGKAQK 124
Query: 206 KQERE------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K ERE ADK + N+Y+KNL ++ +D L+++F EFG ITS VMRD
Sbjct: 125 KSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCKVMRD 184
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+G S+ GFV F PDDA++++ +NGK K YV AQ+K +R L+ +F Q
Sbjct: 185 PNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFSQ 241
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 17/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+++V +L S + L ++F + G + S V R+ +S +G+VN+ A +A+
Sbjct: 47 NNVFVKNLSESTTEDNLLEIFGEYGNITSAVVMRE-GDGKSKCFGFVNFEDPEHAAKAVK 105
Query: 100 ELNFTPLNGKPIRI----MYSYRDPTIR------------KSGAGNIFIKNLDKSIDNKA 143
ELN +GK + S R+ ++ K+ N+++KNLD SI +
Sbjct: 106 ELNGKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDK 165
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS FG+I SCKV D G SRG GFV F + + A A+ ++NG ++ K ++V
Sbjct: 166 LRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALA 225
Query: 204 LRKQERES 211
RK++R +
Sbjct: 226 QRKEDRRA 233
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/389 (55%), Positives = 286/389 (73%), Gaps = 4/389 (1%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GVG + SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+
Sbjct: 7 AGVGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNF 66
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+A RALD +NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DTF
Sbjct: 67 QQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FGNILSCKVA D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F +
Sbjct: 127 SMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMA 186
Query: 209 RESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
R +T RF NVY+KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV F
Sbjct: 187 RLREMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAF 246
Query: 267 DDPDDAARSVEALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
++P+DA ++V ++ + +++ YV +AQKK ER ELK ++EQ E +++G+NL
Sbjct: 247 ENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNL 306
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
YVKNLDD+++DD LK+ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMNG
Sbjct: 307 YVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNG 366
Query: 385 KMVVSKPLYVALAQRKEERRARLQAQFSQ 413
KM+ +KPLYVALAQRKE+R+A+L +Q+ Q
Sbjct: 367 KMMCTKPLYVALAQRKEDRKAQLASQYMQ 395
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 165/293 (56%), Gaps = 23/293 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ +YD F+ G ++S +V D S GYG+V++ A +A+++
Sbjct: 107 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVAND-EELNSKGYGFVHFETEESAQKAIEK 165
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N L GK + + + R +R+ G N++IKN +D +AL F FG I
Sbjct: 166 VNGMLLEGKKVYVGKFQPRMARLREMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKI 225
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRKQEREST 212
S V D+ G+S+G+GFV F+N E A+ A+ +++ L +++++V +K ER S
Sbjct: 226 TSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNER-SA 284
Query: 213 ADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
K R+ N+YVKNL +T +D LK+ F +G ITS VM D +G+SK
Sbjct: 285 ELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSK 344
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FGFV F+ PD+A ++V +NGK K YV AQ+K +R+ +L ++ Q L
Sbjct: 345 GFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 159/291 (54%), Gaps = 17/291 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L + FS+ G +LS +V D++ + S GY +V F A+ A+D
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + ++ N+++KNL ++ + F FG I
Sbjct: 78 TMNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNIL 133
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D + SK +GFV+F+ + A +++E +NG + K+ YVGK Q + R E+
Sbjct: 134 SCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLREMG- 192
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
ET +F N+Y+KN D + + L++LF +FG ITS VM D +G S+G GF
Sbjct: 193 -------ETTRRF--TNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGF 243
Query: 367 VAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRKEERRARLQAQFSQMR 415
VAF E+A KA+TEM+ + + LYV AQ+K ER A L+ ++ Q +
Sbjct: 244 VAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 294
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/465 (48%), Positives = 301/465 (64%), Gaps = 64/465 (13%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 44 QPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 103
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNIL
Sbjct: 104 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 163
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD- 214
SCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S +
Sbjct: 164 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 223
Query: 215 -KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
K F NVY+KNL + +E++ +++F +FG ITS + RD +GKS+ FGFVN+ D A
Sbjct: 224 MKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQ 283
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D I
Sbjct: 284 AAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDI 343
Query: 334 SDDKLKELFSEFGTITSCKVMRDPN----------------------------------- 358
D+KL+E+F+ +GTITS KVMRD N
Sbjct: 344 DDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKES 403
Query: 359 ----------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
G S+G GFV FS+ +EASKA+TEMN +M+ KPLYVALAQRK+
Sbjct: 404 GDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDV 463
Query: 403 RRARLQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
RR++L+A Q R + P+ M P V G GQQ F
Sbjct: 464 RRSQLEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGF 507
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/421 (50%), Positives = 300/421 (71%), Gaps = 24/421 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 39 TASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAI 98
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+P RIM+S RDP++RK G+GNIFIKNL IDNKALHDTFS FGNILSCK
Sbjct: 99 EKLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCK 158
Query: 159 VATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
+ATD + G S+G+GFV F+++E+A+ AID +NGMLLN ++V+V P + +++R+S + K
Sbjct: 159 IATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAK 218
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+S T E + ++ F + +TS + +D++GK + FGFVN++ AA++
Sbjct: 219 ANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKA 278
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LNG +F ++ +VG+AQKKYER+ EL+ ++EQS E +K++G+NL++KNLDDSI D
Sbjct: 279 VEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDD 338
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++L+E FS FGTITS KVM NG S+G GFV FST EEA+KA+TE N ++V KPLYVA
Sbjct: 339 ERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 398
Query: 396 LAQRKEERRARLQAQF---SQMR----------PPVGPRMPMYPPVAPGLGQQLFYGQGP 442
+AQRK+ RR++L Q +QMR G R PP +FYG P
Sbjct: 399 IAQRKDVRRSQLAQQIQARNQMRYQQVTAAAAAAAAGMRGQFMPP--------MFYGVMP 450
Query: 443 P 443
P
Sbjct: 451 P 451
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 18/196 (9%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAA 273
+T ++YV L T +E L IF G ++S V RDA K+ + +VNF+D +
Sbjct: 36 ETSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGR 95
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+++E LN + + +Q+ + SL++ N+++KNL I
Sbjct: 96 QAIEKLNYTPIKGQPCRIMWSQR------------DPSLRKKGSG----NIFIKNLHADI 139
Query: 334 SDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ L + FS FG I SCK+ D G S+G GFV F + E A +A+ +NG ++ + +
Sbjct: 140 DNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEV 199
Query: 393 YVALAQRKEERRARLQ 408
YVA +++R+++L+
Sbjct: 200 YVAPHVSRKDRQSKLE 215
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/470 (47%), Positives = 314/470 (66%), Gaps = 60/470 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYNA + +AL
Sbjct: 113 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 172
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 173 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 232
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A +AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 233 VAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 292
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+ T+++ +++F ++G +TS+++ R +GKS+ FGFVNF + A+++V
Sbjct: 293 NFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAV 352
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK F +E YVG+AQKK+ERE EL+ +E + +E A+K++G+NLY+KNL D + DD
Sbjct: 353 EELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDD 412
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSE+G ITS KVMRD
Sbjct: 413 KLRQMFSEYGPITSAKVMRDSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETKEKRKL 472
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
G S+G GFV FS ++A+KA+TEMN +M+ +KPLYVALAQRK+ R+++L+A +Q+R
Sbjct: 473 GKSKGFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRKDVRKSQLEASIQARNQLR 532
Query: 416 ----------PPVGPRMPMY--PPVAPGL-----GQQLFYGQGPPIIPPQ 448
P + P+Y P PG G+ + + QG IPPQ
Sbjct: 533 MQQAAAQAGIPQQFMQQPVYYAPGQQPGFMPPAGGRGMPFAQGAMGIPPQ 582
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/444 (51%), Positives = 294/444 (66%), Gaps = 46/444 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A FVS SLYVGDL V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY +
Sbjct: 78 AANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQD 137
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A R+LD LN+T + G+P RIM+ +RDP++RKSG GNIF+KNLDK+IDNKAL+DTFS FGN
Sbjct: 138 AERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGN 197
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++NEESA+SAIDK+NGML+ K V+VGPF+R+ ER++ A
Sbjct: 198 ILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLA 257
Query: 214 DKTRFNNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ T++ NVY+KN+ S E L++ F ++G ITS V +D G+ F F NF D D A
Sbjct: 258 E-TKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVVRKDPKGR--LFAFCNFADHDSA 314
Query: 273 ARSVEALNGKKFDD----KE---------------------WYVGKAQKKYEREMELKGK 307
+VEALNGK+ D KE +VG Q K R L+ K
Sbjct: 315 KAAVEALNGKRVTDAGAIKEGEDSGAEEKDEEGQKREGEQILFVGPHQSKAHRSAMLRAK 374
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
FEQ ++ D+F+G+NLY+KN+DDSI D+KL++LF FG+ITS KVMRD G+SR GFV
Sbjct: 375 FEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFV 434
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPP 427
F + EEA+KA+TEM+ K+V KPLYV LA+R+E+R RLQ +F R+P P
Sbjct: 435 CFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRF---------RLPSLRP 485
Query: 428 VA--PG------LGQQLFYGQGPP 443
A PG QL YG P
Sbjct: 486 AAALPGNVAAAAAAAQLQYGGAAP 509
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/377 (53%), Positives = 280/377 (74%), Gaps = 2/377 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL
Sbjct: 41 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 100
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + + RIM+S RDP +RK+G GN+FIKNLD++IDNKALHDTF FGN+LSCK
Sbjct: 101 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCK 160
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G+S+GYGFV ++ E+A +AI +NGMLLNDK+V+VG + ++ER+S D K
Sbjct: 161 VATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKA 220
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+Y+KNL T+++ ++F +G +TS+ V D +GKSK FGFVN++ ++A R+V
Sbjct: 221 QFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAV 280
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D DD
Sbjct: 281 DELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDD 340
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F FG ITSCKVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+L
Sbjct: 341 KLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 400
Query: 397 AQRKEERRARLQAQFSQ 413
AQR+E RR +L++Q +Q
Sbjct: 401 AQRREVRRQQLESQIAQ 417
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/383 (56%), Positives = 280/383 (73%), Gaps = 3/383 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++E+E F N
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTN 182
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+ALN
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 242
Query: 281 GKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
GK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+L+
Sbjct: 243 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 302
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
FS +G ITS KVM D G S+G GFV F+ EA+ A+TE+NG++V SKPLYVALAQR
Sbjct: 303 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQR 362
Query: 400 KEERRARLQAQFSQMRPPVGPRM 422
KEER+A L +Q+ MR G RM
Sbjct: 363 KEERKADLASQY--MRHMTGMRM 383
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/376 (55%), Positives = 279/376 (74%), Gaps = 4/376 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 11 ASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAME 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VM+D +G S+ FGFVNF+ ++A ++V
Sbjct: 190 FTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVM 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ ++ YVG+AQK+ ER+ ELK KFEQ ++ ++++G+NLYVKNLDDSI D+K
Sbjct: 250 DMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+++ +KPLYVALA
Sbjct: 310 LRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ 413
QRKEERRA L Q+ Q
Sbjct: 369 QRKEERRAILSNQYMQ 384
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 162/290 (55%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +L+ S+++ LYD F+ G ++S +V D R G+G+V++ A +A+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQAIST 157
Query: 101 LNFTPLNGKPIRIMY----SYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R+ +R NI++KNL +D + L D FS FG +
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKL 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D+ G SRG+GFV F+ E A+ A+ +NG ++ +Q++VG ++ ER++
Sbjct: 218 LSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELK 277
Query: 215 KT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ R N N+YVKNL ++ ++ L+K F +G+ITS VM + G SK FG
Sbjct: 278 RKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER L ++ Q L
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERRAILSNQYMQRL 386
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 159/289 (55%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L + L++ F G ILS +V D + +S Y ++ F A+ A+D
Sbjct: 11 ASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ K+ N+++KNL ++ L F FG I
Sbjct: 71 TMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + ERE EL+
Sbjct: 127 SCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELR- 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
A E N+YVKNL + + L++LFS+FG + S KVM+D NG SRG GF
Sbjct: 185 ---------ARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V F EEA KA+ +MNGK V + LYV AQ++ ER+ L+ +F QM+
Sbjct: 236 VNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMK 284
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 23/210 (10%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + +++ L DLF+Q G+++SV+V +D + S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKD-NNGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+ ++N ++G+ + R + + + N+++KNLD
Sbjct: 244 AQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKP 362
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER + +N Y++ LS
Sbjct: 363 LYVALAQRKEERRAI-----LSNQYMQRLS 387
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/420 (52%), Positives = 292/420 (69%), Gaps = 16/420 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ A +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q +R GP + + P V Q +Y P + P
Sbjct: 370 RKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAYYASSPSVQP 429
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVMDMNGKEVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/379 (55%), Positives = 279/379 (73%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S DP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/420 (52%), Positives = 292/420 (69%), Gaps = 16/420 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+P+RIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ A +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMY--------PPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q +R GP + + P V Q +Y P + P
Sbjct: 370 RKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAYYASSPSVQP 429
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVMDMNGKEVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/389 (55%), Positives = 285/389 (73%), Gaps = 8/389 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNLD SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A AI+ +NGMLLND++VFVG F +QERE+ A F
Sbjct: 132 CDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKN ++ L+++F +FG S VM D +G+S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSN 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDD I D+KL
Sbjct: 251 MNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMP 423
RKEER+A L +Q+ Q +R GP P
Sbjct: 370 RKEERKAILTSQYMQRLSTLRGLNGPLFP 398
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 105/194 (54%), Gaps = 18/194 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV + + ++D L +LF+Q G+ +SV+V D +S G+G+VN+ E
Sbjct: 185 ARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVD-ENGQSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+ +N L G+ + R + + + N+++KNLD
Sbjct: 244 AQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDD 303
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
ID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +++ K
Sbjct: 304 IIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 362
Query: 198 VFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 363 LYVALAQRKEERKA 376
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/414 (53%), Positives = 304/414 (73%), Gaps = 11/414 (2%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
Q Q PVA + S G ++ GV + S SLYVG+L+ SVN++ L+++F+ +GQV
Sbjct: 22 QQQQPVAATTEQSAEEQG--DSSGVAEN----SASLYVGELNPSVNEATLFEIFSPIGQV 75
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R+SG
Sbjct: 76 SSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSG 135
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GNIFIKNL +IDNKALHDTFS FG ILSCKVATD LGQS+ +GFV ++ E+A++AI+
Sbjct: 136 DGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDELGQSKCFGFVHYETAEAAEAAIE 195
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLND++VFVG + K++RES + K F N+YVKN+ TE++ +K+F +G
Sbjct: 196 NVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGK 255
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS + +D DGKSK FGFVNF++ D A ++VE LN K+ + ++ YVG+AQKK ER EL
Sbjct: 256 ITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKKRERMEEL 315
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K ++E E K++G+NL+VKNLDDSI +KL+E F FGTITS KVM D G S+G
Sbjct: 316 KKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGF 375
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
GFV F+T EEA+KA+TEMN +MV +KPLYVALAQRK+ RR++L+ Q +QMR
Sbjct: 376 GFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQRKDVRRSQLEQQIQARNQMR 429
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/379 (55%), Positives = 279/379 (73%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S DP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S +V D + S GYG+V++ A RA+++
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG L+ KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 168/298 (56%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + + + + K+ N++VKNL ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRI----MWSQHDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL K A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAK--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/360 (58%), Positives = 274/360 (76%), Gaps = 4/360 (1%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD +NF + GKPIRIM+
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F
Sbjct: 62 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++
Sbjct: 121 ETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 180
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
LK++F +FG S VMRD GKSK FGFV+++ +DA ++VE +NGK+ K +VG+
Sbjct: 181 SLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 240
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL++ FS FG+ITS KV
Sbjct: 241 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 300
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
M + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQRKEER+A L Q+ Q
Sbjct: 301 MLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 359
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A +A+++
Sbjct: 75 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 132
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+++L + FS FG
Sbjct: 133 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 192
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+S+G+GFV ++ E A A++++NG ++ K +FVG +K ER++
Sbjct: 193 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 252
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 253 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 311
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 312 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 361
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S +S G+G+V+Y +
Sbjct: 162 AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHED 218
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 219 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 278
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 279 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 337
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 338 LYVALAQRKEER-----KAHLTNQYMQRVA 362
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/375 (56%), Positives = 282/375 (75%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ LK++F ++G S VM D GKS+ FGF++++ +DA ++VE
Sbjct: 191 TNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVED 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + K +VG+AQKK ER+ ELK KFE +E +++G+NLY+KNLDD+I D+KL
Sbjct: 251 MNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 311 RKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAHLTNQYMQ 384
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 168/297 (56%), Gaps = 21/297 (7%)
Query: 125 SGAGN-----IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
+ AGN +++ +L I L++ FS G +LS +V D + + S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
A+ A+D +N ++ K + + +R+ + K+ NV++KNL ++ L
Sbjct: 63 ADAERALDTMNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL K + E N+Y+KN D ++D++LKELF ++G S KVM DP
Sbjct: 178 EREAELGAKAK----------EFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPT 227
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GF+++ E+A+KA+ +MNG + K ++V AQ+K ER+A L+ +F ++
Sbjct: 228 GKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLK 284
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 165/290 (56%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN ++++ L + F +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+SRG+GF+ ++ E A A++ +NG LN K VFVG +K ER++
Sbjct: 218 LSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK FG
Sbjct: 278 RKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 290/415 (69%), Gaps = 43/415 (10%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+D+ +++F +FG +TS+++ RD +GK++ FGFVNF + AA++
Sbjct: 239 ANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKA 298
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 299 VDDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDD 358
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
+KL+ +FSE+G ITS KVMRD
Sbjct: 359 EKLRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKG 418
Query: 358 ---NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 419 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 473
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT N+++KNL L F FG I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNI 175
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 231
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN++ ++DD+ +ELF +FG +TS + RD G +RG G
Sbjct: 232 SKFEEM------KANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFG 285
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV F+T E A+KA+ ++NGK + LYV AQ+K ER L+ + R
Sbjct: 286 FVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAAR 335
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 163/334 (48%), Gaps = 60/334 (17%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A
Sbjct: 144 RKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAA 202
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
++A+ +N LN K + + + +D + K+ N+++KN++ + + + F
Sbjct: 203 SQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINHEVTDDEFRELF 262
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG + S +A D G++RG+GFV F E+A A+D LNG + ++VG +K E
Sbjct: 263 EKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHE 322
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD- 255
RE A+K + N+Y+KNL + ++ L+ +F E+G ITS VMRD+
Sbjct: 323 REEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEKLRAMFSEYGPITSAKVMRDSLI 382
Query: 256 ----------------------------------------GKSKCFGFVNFDDPDDAARS 275
GKSK FGFV F +PDDA ++
Sbjct: 383 EGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKA 442
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V +N + D K YV AQ+K R+ +L+ +
Sbjct: 443 VTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQ 476
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/414 (54%), Positives = 292/414 (70%), Gaps = 16/414 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A ++ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ D G+NLYVKNLDD+I D++
Sbjct: 243 LNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG+++ SKPLYVALA
Sbjct: 303 LRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPP 447
QRKEER+A L +Q+ MR G RM M+ P G G P IPP
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRMQQLGQMFQPNTTG-------GFFVPTIPP 407
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/426 (53%), Positives = 298/426 (69%), Gaps = 25/426 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN ++ ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRMP--------------MYPPVAPGLGQQLFYGQGPP 443
QRKEER+A L +Q+ MR G RM P +AP Q F+G P
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRMQQLGQLFQPNAASGFFVPTMAPS---QRFFG---P 414
Query: 444 IIPPQV 449
+ PQ+
Sbjct: 415 QMTPQM 420
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/382 (55%), Positives = 284/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +
Sbjct: 5 AGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D GKS+ FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG + + K +VG+AQKK ER+ ELK KFE +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 167/297 (56%), Gaps = 21/297 (7%)
Query: 125 SGAGN-----IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
+ AGN +++ +L I L++ FS G +LS +V D + + S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
A+ A+D +N ++ K + + +R+ + K+ NV++KNL ++ L
Sbjct: 63 ADAERALDTMNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL K + E N+Y+KN D + D++LKELF ++G S KVM DP
Sbjct: 178 EREAELGAKAK----------EFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPT 227
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV++ E+A+KA+ +MNG + K ++V AQ+K ER+A L+ +F ++
Sbjct: 228 GKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLK 284
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 164/290 (56%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + F +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+SRG+GFV ++ E A A++ +NG LN K VFVG +K ER++
Sbjct: 218 LSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK FG
Sbjct: 278 RKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/382 (55%), Positives = 284/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN++ +
Sbjct: 5 AGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++F ++G S VM D GKS+ FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG + + K +VG+AQKK ER+ ELK KFE +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 167/297 (56%), Gaps = 21/297 (7%)
Query: 125 SGAGN-----IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
+ AGN +++ +L I L++ FS G +LS +V D + + S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
A+ A+D +N ++ K + + +R+ + K+ NV++KNL ++ L
Sbjct: 63 ADAERALDTMNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL K + E N+Y+KN D + D++LKELF ++G S KVM DP
Sbjct: 178 EREAELGAKAK----------EFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPT 227
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV++ E+A+KA+ +MNG + K ++V AQ+K ER+A L+ +F ++
Sbjct: 228 GKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLK 284
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 164/290 (56%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + F +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKT 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV D G+SRG+GFV ++ E A A++ +NG LN K VFVG +K ER++
Sbjct: 218 LSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK FG
Sbjct: 278 RKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/375 (56%), Positives = 278/375 (74%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D+ G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RREFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERKAILTNQYMQ 384
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 116/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N + G R++Y R D R G N+++K
Sbjct: 244 AQKAVTDMNGKEVRG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRREFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/385 (55%), Positives = 279/385 (72%), Gaps = 4/385 (1%)
Query: 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
V A SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+
Sbjct: 307 VSGATAIPMASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQ 366
Query: 91 AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
+A R L+ +N + GKP+RIM+S RDP++RKSG GNIFIKNL+KSIDNKAL+ TFS
Sbjct: 367 LADAERVLETMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSA 426
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FGNILSCKV +D G S+GYGFV F+N+++A AI+K+NG+ LN+ +V+VG F ++ERE
Sbjct: 427 FGNILSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERE 485
Query: 211 ST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
A F NVY+KN E D L ++FG+FG S VM D GKSK FGFV+++
Sbjct: 486 LELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEK 545
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA R+V+ +NGK+F+ K YVG+AQKK ER+ ELK FEQ +E + +++G+NLYVKN
Sbjct: 546 HEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKN 605
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDDSI D++L++ FS FGTITS KVM + G SRG GFV FS EEA+KA++EMNGK+V
Sbjct: 606 LDDSIDDERLRKAFSPFGTITSAKVMME-GGHSRGFGFVCFSAPEEAAKAVSEMNGKLVA 664
Query: 389 SKPLYVALAQRKEERRARLQAQFSQ 413
+KPLYVALAQRK +R+ L Q+ Q
Sbjct: 665 TKPLYVALAQRKRDRQVHLTNQYMQ 689
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/427 (51%), Positives = 289/427 (67%), Gaps = 26/427 (6%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
S SLYVGDLD +V + QL+++F+ +G V S+RVCRD TRRSLGY YVN++ +A R
Sbjct: 21 LASASLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAER 80
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + GK RIM+ +RDP+IRKSGAGNIFIKNLDK++D + LHDTFS FGNILS
Sbjct: 81 ALDTLNYTQIKGKACRIMWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGNILS 140
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKV+ D SRG+GFVQF+ E A AI K+NGMLL DK++FVGPF+ + EREST +
Sbjct: 141 CKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGPFIPRGERESTNGER 200
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
RF NVYVKN + ++DD +K F +G ITS +MR DG SKCFGFVNF + DDA +
Sbjct: 201 RFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCC 260
Query: 277 EALNGKK--FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
E +NG+K +++ Y G+A+K+ ER+ +LK K++Q E + +NLY+KNLDD+I
Sbjct: 261 EEMNGQKPFGGERDIYAGRAEKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTID 320
Query: 335 DDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
D+KL++ F +FGTITS KVMRD + +S+G GFV F+ EEA++A+T MNG+MV +KP+
Sbjct: 321 DEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPI 380
Query: 393 YVALAQRKEERRARLQAQ----------------------FSQMRPPVGPRMPMYPPVAP 430
YVAL Q E RR AQ F++ PP + M+P P
Sbjct: 381 YVALHQPIEIRRQMQAAQGQRQNLLPRFQMQGMPMPQMMPFTRTAPPGAQGVFMFPGQMP 440
Query: 431 GLGQQLF 437
G +Q F
Sbjct: 441 GQYRQPF 447
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/440 (50%), Positives = 299/440 (67%), Gaps = 23/440 (5%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
AP + SP ++ A GG G SLYVG+LD SV ++ L+++FN +G V S+
Sbjct: 17 APPSNVGAISPPSSTQAGPGGTG-------ASLYVGELDPSVTEAMLFEIFNIIGPVASI 69
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TRRSLGY YVNY A + RAL+ LN++ + G+P RIM+S RDP +RK+G GN
Sbjct: 70 RVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSAIKGRPCRIMWSQRDPALRKTGQGN 129
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLD+SIDNKALHDTF+ FG ILSCKV D G+SRG+ FV + E+A +AI ++
Sbjct: 130 IFIKNLDESIDNKALHDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVD 189
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GM+LNDK+VFVG + K+ER+S A++ R F NV+VKN+ + TE + + + +FG S
Sbjct: 190 GMMLNDKKVFVGHHIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVS 249
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
A+ D +GKSK FGFVN+ + A ++V+ LN K+ + ++ + G+AQK+ ER+ EL+
Sbjct: 250 IALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKT 309
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E+ +E K G+NLYVKNLDD DD+L+ F FGTITSCKVM+D G+SR GFV
Sbjct: 310 IEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFV 369
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ---MRPPVGP---- 420
+S+ EEA+KA++EMNGKM+ SKPLYVALAQR+E RR L++Q +Q R P P
Sbjct: 370 CYSSPEEATKAVSEMNGKMIGSKPLYVALAQRREARRQALESQIAQRTNQRVPYAPGGMP 429
Query: 421 ----RMPM--YPPVAPGLGQ 434
PM YPP+ PG GQ
Sbjct: 430 QGYMNQPMYGYPPM-PGYGQ 448
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/379 (55%), Positives = 280/379 (73%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG GNIF+KNLDKSI+NK L+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NG LLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAHLTNEYMQ 384
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/426 (52%), Positives = 290/426 (68%), Gaps = 47/426 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY----- 88
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+
Sbjct: 5 APNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 89 --------------------------------------NAAHEATRALDELNFTPLNGKP 110
++ A RALD +NF + G+P
Sbjct: 65 VVVNVVTQRGFTRMAACVPHTCLANVPTIVPTMLDPRPHSTVNAERALDTMNFDMIKGRP 124
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGY 170
IRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA D G S+GY
Sbjct: 125 IRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGY 184
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-FNNVYVKNLSE 228
GFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE +K + F NVYVKN E
Sbjct: 185 GFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGE 244
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDK 287
TED LK +F ++G ITS VM DGKS+ FGFV F+DPD A ++V LNGK+ + K
Sbjct: 245 DMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGK 304
Query: 288 EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D++L++ F+ FGT
Sbjct: 305 CMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGT 364
Query: 348 ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
ITS KVM + G S+G GFV FS EEA+KA+TEMNG++V SKPLYVALAQRKE+R+A L
Sbjct: 365 ITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHL 423
Query: 408 QAQFSQ 413
+Q+ Q
Sbjct: 424 ASQYMQ 429
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 166/291 (57%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D+
Sbjct: 143 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGA-SKGYGFVHFETEEAANKSIDK 201
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + L D F +G I
Sbjct: 202 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTI 261
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV + G+SRG+GFV F++ ++A+ A+ +LNG + + K ++VG +K ER+
Sbjct: 262 TSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQEL 321
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL +T ++ L+K F FG ITS VM + +G+SK F
Sbjct: 322 KRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGF 380
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 381 GFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 431
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 59/333 (17%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEE------- 179
++++ +L I L + FS+ G +LS +V D + + S GY +V F
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVNVV 70
Query: 180 ------------------------------------SAKSAIDKLNGMLLNDKQVFVGPF 203
+A+ A+D +N ++ + + +
Sbjct: 71 TQRGFTRMAACVPHTCLANVPTIVPTMLDPRPHSTVNAERALDTMNFDMIKGRPIRI--- 127
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+R+ + K+ NV++KNL + + F FG I S V +D G SK +GF
Sbjct: 128 -MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGF 186
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
V+F+ + A +S++ +NG + K+ YVGK + ERE EL E A F N
Sbjct: 187 VHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELG--------EKAKLF--TN 236
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
+YVKN + +++DKLK++F ++GTITS KVM +G SRG GFVAF + A +A+ E+N
Sbjct: 237 VYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELN 296
Query: 384 GKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
GK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 297 GKEIAEGKCMYVGRAQKKAERQQELKRKFEQLK 329
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/379 (55%), Positives = 281/379 (74%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRR Y YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG GNIF+KNLDKSI+NK L+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAHLTNEYMQ 384
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/380 (54%), Positives = 288/380 (75%), Gaps = 5/380 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+LD +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+++
Sbjct: 36 SLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQ 95
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+TP+ G+ RIM+S RDP +RK G+GNIFIKNL IDNKAL +TFS FGNILS K+A
Sbjct: 96 LNYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIA 155
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
TD G+S+G+GFV F++E SAK AID LNGMLLN ++++V P L ++ER+S ++T+ F
Sbjct: 156 TDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHF 215
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN++ TT+++ ++F ++G + S+++ + DGK K FGFV+F+ +DAA++VE
Sbjct: 216 TNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEE 275
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG +F D+ +V +AQKKYER ELK ++E S E K++G+NL+VKNLDDSI D+KL
Sbjct: 276 LNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKL 335
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE F+ +GTITS +VMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 336 KEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 395
Query: 399 RKEERRARLQAQF---SQMR 415
RK+ RR++L Q +QMR
Sbjct: 396 RKDVRRSQLAQQIQARTQMR 415
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++L D + +LF + G V+S + + + G+G+V++ +A +A++
Sbjct: 216 TNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLK-GFGFVDFEKHEDAAKAVE 274
Query: 100 ELNFTPLNGKPI---RIMYSY-------------RDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN T + + R Y R + K N+F+KNLD SID++
Sbjct: 275 ELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEK 334
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F+ +G I S +V G+S+G+GFV F E A AI + N ++ K ++V
Sbjct: 335 LKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 394
Query: 204 LRKQERES 211
RK R S
Sbjct: 395 QRKDVRRS 402
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD S++D +L + F G + SVRV R +S G+G+V ++ EAT
Sbjct: 315 KYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMR-TDNGKSKGFGFVCFSTPEEAT 373
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130
+A+ E N + GKP+ + + R R A I
Sbjct: 374 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 408
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/408 (54%), Positives = 292/408 (71%), Gaps = 6/408 (1%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD SV ++ LYDLF+ +G V S+RVCRD T+ SLGY YVN++ + A+++L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N+TP+ G+P RIM+S RDP++RK G+GN+FIKNL +IDNKALHDTFS FGNILSCK+AT
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIAT 161
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D G+SR +GFV F+ EE+AK AID +NGMLLN +V+V P + K++R+S D K+ F
Sbjct: 162 DETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFT 221
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKN+ TT+++ +K+F +G ITS + RD +GK + FGFVNF+D + A ++ E L
Sbjct: 222 NVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEEL 281
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N F ++ YVG+AQKKYER ELK ++E S E K++G+NL+VKNLDDS+ D KL+
Sbjct: 282 NDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLE 341
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F+ FGTITS KVMRD G S+G GFV FST EEA+KA+TE N ++V KPLYVA+AQR
Sbjct: 342 EEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 401
Query: 400 KEERRARLQAQF---SQMRPPVGPRMPMYPPVAPG-LGQQLFYGQGPP 443
KE RR++L Q +QMR PG Q +FYG PP
Sbjct: 402 KEVRRSQLAQQIQARNQMRYQQATAAAAAAAGMPGQFMQPMFYGVMPP 449
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F G + SV+V RD S G+G+V ++ EAT
Sbjct: 320 KYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRD-EAGNSKGFGFVCFSTPEEAT 378
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 379 KAITEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQARN 417
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/374 (56%), Positives = 281/374 (75%), Gaps = 4/374 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SID+KAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNLS E L+ +F FG + S VMRD G S+ FGFVNF+ ++A ++V+
Sbjct: 190 FTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ ++ G+NLYVKNLDDSISD+K
Sbjct: 250 HMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ +FS +G ITS KVM + + S+G GFV FS+ EEA+KA+TEMNG +V +KPLYVALA
Sbjct: 310 LRTVFSPYGVITSAKVMTEGDH-SKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQF 411
QRKEER+A L Q+
Sbjct: 369 QRKEERKAILTNQY 382
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 166/291 (57%), Gaps = 23/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +L+ S++ LYD F+ G ++S +V D R G+G+V++ A +A+
Sbjct: 100 NVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETNEAAQQAIGT 157
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGN 153
+N LN + + + + ++ R++ G NI++KNL +D + L D F FGN
Sbjct: 158 MNGMLLNDRKVFVGH-FKSQREREAELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGN 216
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
+LS KV D+ G SRG+GFV F+ E A+ A+D +NG ++ +Q++VG ++ ER++
Sbjct: 217 MLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNEL 276
Query: 214 DK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ TR+ N+YVKNL ++ +++ L+ +F +G+ITS VM + D SK F
Sbjct: 277 KRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGD-HSKGF 335
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG K YV AQ+K ER+ L ++ + L
Sbjct: 336 GFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQYMKRL 386
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 157/288 (54%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++TFS G ILS +V D + +S GY ++ F A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ + + + +R+ K+ NV++KNL ++ L F FG I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + ERE EL
Sbjct: 128 CKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELG-- 184
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A E N+YVKNL + + L++LF FG + S KVMRD +G SRG GFV
Sbjct: 185 --------AQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFV 236
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
F EEA KA+ MNGK V + LYV AQ++ ER+ L+ +F Q++
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLK 284
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L +F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTE--GDHSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N ++K L
Sbjct: 348 KAVTEMNGCIVGTKPLYVALAQRKEE-RKAILTNQYMKRL 386
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/414 (54%), Positives = 291/414 (70%), Gaps = 16/414 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLDK IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A +ID++NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV ++ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ D G+NLYVKNLDD+I D++
Sbjct: 243 LNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG+++ SKPLYVALA
Sbjct: 303 LRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPP 447
QRKEER+A L +Q+ MR G RM M+ P G G P IPP
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRMQQLGQMFQPNTTG-------GFFVPTIPP 407
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/383 (55%), Positives = 282/383 (73%), Gaps = 5/383 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N A A
Sbjct: 33 VSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTA 92
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++LNFTP+ GK RIM+S RDP++RK GAGNIFIKNL IDNKAL+DTFS FGNILS
Sbjct: 93 IEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS 152
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD G+S+G+G+V F+ +ESA AID LNGMLLN ++++VGP L K+ERES + K
Sbjct: 153 KVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMK 212
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN++ TT+ + +++ +FG S + R +G++K FGFVNF + +DA +
Sbjct: 213 ANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKC 272
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN +F + YV +AQKKYER+ ELK ++E + E K++G+NL++KNLDDSI D
Sbjct: 273 VEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDD 332
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+E F+ +GTITS KVM NG S+G GFV FST EEA+KA+TE N ++V KPLYVA
Sbjct: 333 KKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Query: 396 LAQRKEERRARLQAQF---SQMR 415
+AQRK+ RR++L Q +QMR
Sbjct: 393 IAQRKDVRRSQLAQQIQARNQMR 415
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++L + L DKQ + E +T ++YV +L + +E L IF G +
Sbjct: 10 EQLENLSLQDKQ--------EGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAV 61
Query: 246 TSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
+S V RDA K+ + +VNF+D D A ++E LN K + +Q+
Sbjct: 62 SSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR-------- 113
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ SL++ N+++KNL I + L + FS FG I S KV D G S+G
Sbjct: 114 ----DPSLRKKG----AGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGF 165
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G+V F E AS+A+ +NG ++ + +YV K+ER ++ +
Sbjct: 166 GYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFE 209
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/450 (49%), Positives = 309/450 (68%), Gaps = 31/450 (6%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
P A PS + G AN+G S SLYVG+LD SV ++ L++LFN +G V
Sbjct: 40 PTEAAGSADDPSRLSAG-ANSGVPVSQNNSNSASLYVGELDPSVTEAMLFELFNNIGAVA 98
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEAT-----RALDELNFTPLNGKPIRIMYSYRDPTI 122
S+RVCRD TRRSLGY YVN++ + + RALDELN+T + GKP RIM+S RDP++
Sbjct: 99 SIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTGERALDELNYTLIKGKPCRIMWSQRDPSL 158
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+G GN+FIKNLD SIDNKALHDTF+ FG+ILSCKVA D LG S+GYGFV + ESA+
Sbjct: 159 RKTGTGNVFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAE 218
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFG 240
+AI K V+VG + K++R+S D K +F NVYVKN+ +E + +++F
Sbjct: 219 AAI----------KHVYVGHHVSKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFK 268
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+FG +TS ++ D +GKS+ FGFVN+++ +DAAR+VE L+ ++ D++ YV +AQKK+ER
Sbjct: 269 KFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHER 328
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E EL+ ++EQ+ + +K+ G+NL+VKNLDD I D++L++ FS +GTITS K+M D NG
Sbjct: 329 EEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGK 388
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS-------Q 413
S+G GFV FS+ +EA+KA+TEMN +MV KPLYVALAQRK+ RR++L++Q + Q
Sbjct: 389 SKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRKDVRRSQLESQINARNQLRIQ 448
Query: 414 MRPPVGPRMPMYP-PVAPGLGQQLFYGQGP 442
+ P Y P AP +FYGQGP
Sbjct: 449 QQAAAAGMSPQYGMPGAP-----MFYGQGP 473
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/465 (47%), Positives = 307/465 (66%), Gaps = 67/465 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 178
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 VAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+S ++D+ +++F ++G ITS+++ RD +GKS+ FGFVNF + AA++V
Sbjct: 239 NFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E L+GK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D+
Sbjct: 299 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 358
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGS-------------------------------- 364
KL+++F+EFG ITS KVMRD S GS
Sbjct: 359 KLRQMFAEFGPITSAKVMRD--APSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKA 416
Query: 365 --------------GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410
GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+++L+A
Sbjct: 417 DKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEAS 476
Query: 411 F---SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
+Q+R P+ M PPV FYGQ P IP
Sbjct: 477 IQARNQLRMQQAAAAAGMPQQYMQPPV--------FYGQQPGFIP 513
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/429 (49%), Positives = 302/429 (70%), Gaps = 20/429 (4%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY + RAL++L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ + + RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKVAT
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 165
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S D K +F
Sbjct: 166 DEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFT 225
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL + T+D+ +++F ++G +TS V D +G SK FGFVN++ ++A +V+AL
Sbjct: 226 NLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDAL 285
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ K+ +V +AQKK ERE EL+ +EQ+ E K++G+NLY+KNL+D + D+KL+
Sbjct: 286 HDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 345
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F FGTITSCKVMRD S+G GFV FS+ +EA+KA+ EMN KM+ SKPLYV+LAQR
Sbjct: 346 AEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQR 405
Query: 400 KEERRARLQAQFSQ-----MRPPVGPRM-------PMYPPVAPG----LGQQLF-YGQGP 442
+E RR +L++Q +Q M+ + PMY P PG G+ + YGQ P
Sbjct: 406 REVRRQQLESQIAQRNQIRMQQAAAAGIPGGYINGPMYYPPGPGSFPPQGRNMMGYGQ-P 464
Query: 443 PIIPPQVIY 451
++PP+ Y
Sbjct: 465 GMLPPRPRY 473
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/400 (52%), Positives = 291/400 (72%), Gaps = 12/400 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FG+ILSCKV
Sbjct: 72 MNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
TD G ++GYGFV F+ +E+A AI+K+NGMLLN K+V+VG F+ ++ER + + +F
Sbjct: 132 TDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQMGDHQKQF 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV++KNL+E + L + G++G I S +M D D KSK FGF++F+D + A V+
Sbjct: 192 TNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFD-DSKSKGFGFISFEDHEAANDFVKT 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + + Y G+AQKK ER ELK +FE +E + +++G+NLY+KNLDD I D++L
Sbjct: 251 INGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM D S+G GFV FS+ EEA+KA+TEMNG+++V+KPLYVALAQ
Sbjct: 311 RKEFSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVAKPLYVALAQ 370
Query: 399 RKEERRARLQAQFSQMRPP---VG------PRMPMYPPVA 429
RK+ERRA+L +Q+ Q P VG P P+YP +A
Sbjct: 371 RKDERRAQLASQYMQRVAPQVRVGQQASQQPVNPVYPTMA 410
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/384 (52%), Positives = 282/384 (73%), Gaps = 12/384 (3%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY + RAL++L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK----------ALHDTFSTF 151
N++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNK ALHDTF+ F
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAF 165
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GN+LSCKVATD G+SRGYG+V ++ E+A+SAI +NGMLLNDK+V+VG + ++ER+S
Sbjct: 166 GNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQS 225
Query: 212 TADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
++ R F N+YVKNL T+D ++F +FG +TS + D +GKSK FGFVNF++
Sbjct: 226 KLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENH 285
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+ AA++V+ L+ F+ K+ +V +AQKK ERE EL+ +E + E K++G+NLY+KNL
Sbjct: 286 EQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNL 345
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
+D + D+KL+ F FGTITSCKVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ S
Sbjct: 346 EDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGS 405
Query: 390 KPLYVALAQRKEERRARLQAQFSQ 413
KPLYV+LAQR+E RR +L++Q +Q
Sbjct: 406 KPLYVSLAQRREVRRQQLESQIAQ 429
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/386 (54%), Positives = 279/386 (72%), Gaps = 8/386 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGP 420
RKEER+A L Q+ Q MR GP
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGP 395
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/452 (50%), Positives = 314/452 (69%), Gaps = 27/452 (5%)
Query: 10 APVAVAAQPSPATNGIANNGG--VGDARQF--VSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
APVA TN + N G D+ Q S SLYVG+L+ SVN++ L+++F+ +GQ
Sbjct: 21 APVATQE-----TNVSSGNEGEDAADSSQLPDTSASLYVGELNPSVNEALLFEIFSPVGQ 75
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V S+RVCRD T++SLGY YVN++ + +A++ELN++ ++G+P RIM+S RDP++R++
Sbjct: 76 VSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLIDGRPCRIMWSQRDPSLRRN 135
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GNIFIKNL +IDNKALHDTFS FG ILSCKVATD G S+ +GFV ++ E+AK+AI
Sbjct: 136 GEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAI 195
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+ +NGMLLND++V+VG + K++RES + K F NVYVKN+ +E++++K+F +G
Sbjct: 196 ENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYG 255
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
ITS + +DA+GKSK FGFVNF+ + A ++VE LN K + ++ YVG+AQKK ER E
Sbjct: 256 KITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEE 315
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK ++E + E K++G+NL+VKNLDDSI KL+E F FGTITS +VM D +G S+G
Sbjct: 316 LKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKG 375
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMRPPVGP 420
GFV FS+ EEA+KA+TEMN +M KPLYVALAQRK+ RR++L+ Q +QMR
Sbjct: 376 FGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQARNQMR----- 430
Query: 421 RMPMYPPVAPG--LGQ---QLFYGQGPPIIPP 447
M A G GQ +FYGQ P PP
Sbjct: 431 ---MQNAAATGGIPGQFIPPMFYGQQPGFFPP 459
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/453 (49%), Positives = 304/453 (67%), Gaps = 49/453 (10%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 179 KVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN+ TE++ +++F +FG +TS ++ RD + GKS+ FGFVNF + + AA
Sbjct: 239 ANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAAT 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNLDD I
Sbjct: 299 AVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEID 358
Query: 335 DDKLKELFSEFGTITSCKVMRD-------------------------------------- 356
D+KL+ELF+ FG ITS KVMRD
Sbjct: 359 DEKLRELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEASAPKA 418
Query: 357 --PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
P G S+G GFV F+ +EA+KA+++MN +MV +KPLYVALAQRK+ R+++L+A Q
Sbjct: 419 KRPLGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEASI-QA 477
Query: 415 RPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP 447
R + RM A G+ QQ Y Q P PP
Sbjct: 478 RNQI--RMQQAAAQA-GMPQQ--YMQAPMFFPP 505
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/386 (54%), Positives = 279/386 (72%), Gaps = 8/386 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGP 420
RKEER+A L Q+ Q MR GP
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGP 395
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/465 (47%), Positives = 307/465 (66%), Gaps = 67/465 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 119
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 239
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN+S ++D+ +++F ++G ITS+++ RD +GKS+ FGFVNF + AA++V
Sbjct: 240 NFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 299
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E L+GK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D+
Sbjct: 300 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 359
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGS-------------------------------- 364
KL+++F+EFG ITS KVMRD S GS
Sbjct: 360 KLRQMFAEFGPITSAKVMRD--APSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKA 417
Query: 365 --------------GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410
GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+++L+A
Sbjct: 418 DKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEAS 477
Query: 411 F---SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
+Q+R P+ M PPV FYGQ P IP
Sbjct: 478 IQARNQLRMQQAAAAAGMPQQYMQPPV--------FYGQQPGFIP 514
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/417 (55%), Positives = 297/417 (71%), Gaps = 17/417 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L KPIRIM+S RDP++R+SG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-TADKTR-F 218
TD G S+GYGFV F+ EE+A +AI+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN + ++ LK++F +G ITS VM DGKSKCFGFV F+ + A +VEA
Sbjct: 183 TNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK D K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDD+I D++
Sbjct: 243 LNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM D +G S+G GFV F EA+ A+TEMNG++V SKPLYVALA
Sbjct: 303 LRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM----PMYPPVAP--------GLGQQLFYGQGP 442
QRKE+R+A L +Q+ MR G RM M+ P P G GQ+ F Q P
Sbjct: 363 QRKEDRKAHLASQY--MRHMAGMRMQQIGQMFQPNTPGNFFVPTMGPGQRFFGPQVP 417
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV + V+D +L ++F+ G++ S +V +S +G+V + A A++
Sbjct: 183 TNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIK-EDGKSKCFGFVAFETTEAAEAAVE 241
Query: 100 ELNFTPL-NGKPIRIMYSYRDPTIRK---------------SGAG-NIFIKNLDKSIDNK 142
LN + +GK + + + + ++ S G N+++KNLD +ID++
Sbjct: 242 ALNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDE 301
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV TD G+S+G+GFV F A A+ ++NG ++ K ++V
Sbjct: 302 RLRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVAL 361
Query: 203 FLRKQERES 211
RK++R++
Sbjct: 362 AQRKEDRKA 370
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/449 (49%), Positives = 312/449 (69%), Gaps = 19/449 (4%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
Q AP A ++ +PA++ ++ G++ S SLYVG+L+ SVN++ LY++F+ +GQV
Sbjct: 20 QAAAPDAAPSESTPASSETEDS--QGESVAVTSASLYVGELNPSVNEAVLYEIFSPLGQV 77
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD T++SLGY YVNY+ + RAL++LN++ ++G+P RIM+S RDP++R++G
Sbjct: 78 SSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQLNYSLIDGRPCRIMWSQRDPSLRRNG 137
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GNIFIKNL IDNKALHDTFS FG ILSCKVATD G+S+ +GFV ++ E+A +AI+
Sbjct: 138 DGNIFIKNLHPDIDNKALHDTFSAFGRILSCKVATDEHGRSKCFGFVHYETAEAADAAIE 197
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGM LND++VFVG + K++R + + K F NV+VKN TE +L +F +G
Sbjct: 198 NVNGMSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFTEAELAAMFEPYGK 257
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS +D++GKSK FGF+NF++ D A ++VE LN K+ + ++ YVG+AQKK ER EL
Sbjct: 258 ITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYVGRAQKKRERIEEL 317
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K ++E + E K++G+NL+VKNLDDS++ + L+E F FGTITS KVM D G S+G
Sbjct: 318 KKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKSKGF 377
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMRPPVGPR 421
GFV FS EEA+KA+TEMN +MV+ KPLYVALAQRK+ RR++L+ Q +QMR
Sbjct: 378 GFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRKDVRRSQLEQQIQARNQMR------ 431
Query: 422 MPMYPPVAPGLGQQ----LFYGQGPPIIP 446
M A G+ Q +FYGQ P P
Sbjct: 432 --MQNAAAAGIPGQFMPPMFYGQQPGFFP 458
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/424 (52%), Positives = 291/424 (68%), Gaps = 16/424 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A R
Sbjct: 8 FPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILS
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE A
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F N+YVKNL E L+ +F FG + S VMRD G S+ FGFVNF ++A +
Sbjct: 187 AMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI
Sbjct: 247 AVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+KL++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+++ +KPLYV
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ----MRPPVGPRMPMY--------PPVAPGLGQQLFYGQGP 442
ALAQRKEER+A L Q+ Q +R GP + + P V Q +Y G
Sbjct: 366 ALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFHQPTSYFLPSVPQPPAQAAYYASGL 425
Query: 443 PIIP 446
P+ P
Sbjct: 426 PMQP 429
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF++ G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSG-HSRGFGFVNFQKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ ++N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVMDMNGKEVSG---RLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +L
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIL 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 359 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/415 (53%), Positives = 287/415 (69%), Gaps = 26/415 (6%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A AA PA+ +AN +SLYVGDL+ V ++QL++LF+ +G V S+RVC
Sbjct: 8 APAATTQPASTPLAN------------SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVC 55
Query: 73 RDLSTRRSLGYGYVNYNAA---HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RD TRRSLGY YVNYN+A A RA++ LN+ +NGKP+RIM+S+RDP+ RKSG GN
Sbjct: 56 RDAVTRRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGN 115
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDK+ID KALHDTFS FG ILSCKVATD+ G S+GYGFV F+++ +A AI +N
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVN 175
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
+ K V+VGPF ++ +R + NV+VKNL +D+L K+ E G ITS
Sbjct: 176 QKEIEGKIVYVGPFQKRADRPQDV----YTNVFVKNLPADIGDDELGKMATEHGEITSAV 231
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VM+D G SK FGF+NF D + AA+ VE LN ++ K Y G+AQKK ERE L+ K E
Sbjct: 232 VMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAE 291
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+S +E K++G+NLYVKNL D + DD L+ELF+ GTITSCKVM+D +G S+G GFV F
Sbjct: 292 ESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCF 351
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF-------SQMRPP 417
++ +EA++A+TEMNGKMV KPLYVALAQRK+ RRA+L+A + RPP
Sbjct: 352 TSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEANMQARMGMGAMSRPP 406
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/381 (55%), Positives = 278/381 (72%), Gaps = 21/381 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K++F
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFT------------- 171
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
NVYVKN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A
Sbjct: 172 ------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAE 225
Query: 274 RSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDS
Sbjct: 226 QAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDS 285
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPL
Sbjct: 286 IDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPL 344
Query: 393 YVALAQRKEERRARLQAQFSQ 413
YVALAQRKE+R+A L +Q+ Q
Sbjct: 345 YVALAQRKEDRKAHLASQYMQ 365
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 159/285 (55%), Gaps = 30/285 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++D
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKSIDR 158
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N LNGK + N+++KN + + + L + F +G I S KV
Sbjct: 159 VNGMLLNGKKLFT---------------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVM 203
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADKT--- 216
G+SRG+GFV F++ ++A+ A+ +LNG + + K ++VG +K ER+ +
Sbjct: 204 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 263
Query: 217 ----RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
R N N+YVKNL ++ ++ L+K F FG ITS VM + +G+SK FGFV F
Sbjct: 264 LKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFS 322
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
P++A ++V +NG+ K YV AQ+K +R+ L ++ Q L
Sbjct: 323 APEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 367
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 151/290 (52%), Gaps = 37/290 (12%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG + K+ +
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFT--------------- 171
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
N+YVKN + ++DDKLKE+F ++GTITS KVM +G SRG GF
Sbjct: 172 ----------------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 215
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 216 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 265
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/428 (50%), Positives = 297/428 (69%), Gaps = 19/428 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY + RAL
Sbjct: 37 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERAL 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN++ + + RIM+S RDP +RK+G GNIFIKNLD++IDNKALHDTF+ FGN+LSCK
Sbjct: 97 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD G SRGYGFV ++N ESA +AI +NGMLLNDK+V+VG + K+ER++ D K+
Sbjct: 157 VATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKS 216
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F NV++KNL + ++ K+I +G I S V +D G S+ FGFVN+ + ++AA++V
Sbjct: 217 QFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E+LN + D K+ + +AQKK ERE EL+ +EQ+ E K+ G+NLYVKNLDD D+
Sbjct: 277 ESLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L F FGTITS K+MRD G S+G GFV FS+ +EA+KA++E++GKM+ SKPLYV+L
Sbjct: 337 RLVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSL 396
Query: 397 AQRKEERRARLQAQFSQMR------------PPVG--PRMPMY--PPVAPGLGQQLFYGQ 440
AQR++ RR +L++Q +Q P G P PMY PP G + YGQ
Sbjct: 397 AQRRDVRRQQLESQIAQRNQLRLQHQAAAGVPISGFMPGAPMYYQPPPGAYPGGRSMYGQ 456
Query: 441 GPPIIPPQ 448
P PP+
Sbjct: 457 -PGFAPPR 463
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/436 (51%), Positives = 297/436 (68%), Gaps = 33/436 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGAKAMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR---- 274
NVY+KN + +D L++IF +FG S VM D+ G+SK FGFVNF+ ++A +
Sbjct: 191 TNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGS 250
Query: 275 ------------SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
+V +NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E +++G+
Sbjct: 251 SCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGV 310
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NLYVKNLDD I DD+L++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEM
Sbjct: 311 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEM 369
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQFSQ----MRPPVGPRM------PMY--PPVAP 430
NG++V +KPLYVALAQRKEER+A L Q+ Q +R GP + P Y PP+
Sbjct: 370 NGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATLRALPGPLLGSFQPPPGYFLPPIPQ 429
Query: 431 GLGQQLFYGQGPPIIP 446
+ FY P++P
Sbjct: 430 PQTRATFYSPS-PVVP 444
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 306 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 363
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 364 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 402
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/380 (53%), Positives = 287/380 (75%), Gaps = 5/380 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+LD SV+++ LYD+F+ +G V S+RVCRD T SLGY YVN++ +A+++
Sbjct: 39 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQ 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+T + GKP RIM+S RDP++RK G+GNI+IKNL +IDNK+LH+TFSTFGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G SRG+GFV F+NE A+ AI+ +NGML+ND++V+V + K++R+S + K +F
Sbjct: 159 TDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKF 218
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKN+ T++++ +++F ++G ITS + +D++GK + FGF+NF+D AAR+V+
Sbjct: 219 TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDE 278
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN F + YVG+AQKK+ER+ ELK ++E + E K++G+NL++KNLDDSI D+KL
Sbjct: 279 LNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKL 338
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
K+ F+ FGTITS KVM+D G SRG GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 339 KDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQ 398
Query: 399 RKEERRARLQAQF---SQMR 415
RKE RR +L Q +QMR
Sbjct: 399 RKEVRRNQLAQQIQARNQMR 418
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL + + LF++ G++ S + +D S + G+G++N+ A RA+D
Sbjct: 219 TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKD-SEGKLRGFGFINFEDHSTAARAVD 277
Query: 100 ELNFTPLNGKPIRI----------------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN + G+ + + + R + K N+FIKNLD SID++
Sbjct: 278 ELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEK 337
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L D F+ FG I S KV D G SRG+GFV F E A AI + N L+ K ++V
Sbjct: 338 LKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIA 397
Query: 204 LRKQER 209
RK+ R
Sbjct: 398 QRKEVR 403
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 17/202 (8%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNF 266
E E+ +T ++YV L + +E L IF G ++S V RDA S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
D + +++E LN K + +Q+ + SL++ N+Y+
Sbjct: 87 HDHEAGRKAIEQLNYTLIKGKPCRIMWSQR------------DPSLRKKGSG----NIYI 130
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL +I + L E FS FG I SCKV D NG+SRG GFV F +A A+ +NG +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGML 190
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
+ + +YVA K++R+++L+
Sbjct: 191 MNDQEVYVAWHVSKKDRQSKLE 212
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/420 (52%), Positives = 295/420 (70%), Gaps = 16/420 (3%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+S+SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVNY A +A RA
Sbjct: 8 ISSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN TP+ GKP RIM+S RDP++RKSG GN+FIKNLDK ID+KAL+DTFS FGNILSC
Sbjct: 68 LDTLNNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD S+G+GFV +++++SA AI K+NGM++N ++VFVGPF +ER + +
Sbjct: 128 KVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE-IK 186
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSV 276
F NV+ KNL+E T D LK++ +G IT+ A+M D GKSK F F NF+ D A V
Sbjct: 187 FTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVV 246
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E NGK F K Y G+AQKK ERE ELK FE K++G+NLY+KN+DDSI +D
Sbjct: 247 EIENGKVFHGKPLYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDND 299
Query: 337 KLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+E+FS+FGTITS VM+D S+G GFV +++ +EA++A+TEMNG+M+ +KPLYVA
Sbjct: 300 KLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYVA 359
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYSFLL 455
LAQRK+ RRA+L+ Q Q + G R M P + G +F+ P + P V+Y ++
Sbjct: 360 LAQRKDIRRAQLEMQH-QQKFKAGMRQTMAPAYS---GGPVFFTPAP--VTPAVVYQQMM 413
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ ++D S+++ +L ++F+Q G + S V +D S G+G+V Y + EAT
Sbjct: 281 KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N + KP+ + + R
Sbjct: 341 RAVTEMNGRMIGTKPLYVALAQR 363
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/497 (46%), Positives = 306/497 (61%), Gaps = 73/497 (14%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
AP A + S T+ NN Q S SLYVG+LD SV ++ LY+LF+ +GQV S+
Sbjct: 28 APEVTAVESSSPTSPNNNN-------QPHSASLYVGELDPSVTEAMLYELFSSIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN
Sbjct: 81 RVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +N
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLNDK+VFVG + K++R+S D K F N+Y+KN+ TE++ +KIF +FG ITS
Sbjct: 201 GMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ RD +GKS+ FGFVN+ + A +V+ ++ K+ ++ YVG+AQKK+ERE EL+ +
Sbjct: 261 ATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR----- 362
+E + E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD R
Sbjct: 321 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPD 380
Query: 363 ------------------------------------------------GSGFVAFSTAEE 374
G GFV FS+ +E
Sbjct: 381 SEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDE 440
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG----------PRMPM 424
ASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R + P+ M
Sbjct: 441 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTIRQQQAAAAAGMPQPYM 499
Query: 425 YPPVAPGLGQQLFYGQG 441
P V G GQQ F G
Sbjct: 500 QPAVFYGPGQQGFIPAG 516
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/467 (48%), Positives = 304/467 (65%), Gaps = 65/467 (13%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LDELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN+ T+DD + +F +FG +TS+++ RD + GKS+ FGFVNF +DA++
Sbjct: 239 ANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+VE LN K+F + YVG+AQKK+ERE EL+ +E + +E A K++G+NLY+KNLDD +
Sbjct: 299 AVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 335 DDKLKELFSEFGTITSCKVMR--------DPN---------------------------- 358
DDKL++LFSEFG ITS KVMR +P
Sbjct: 359 DDKLRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAK 418
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
G S+G GFV F ++A+KA+ EMN +MV KPLYVALAQRK+ R+ +L+A
Sbjct: 419 ADKKPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQLEASI 478
Query: 412 ---SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQG--PPIIPP 447
+Q+R P+ M PV FYG G P +PP
Sbjct: 479 QARNQLRMQQAAAAAGMPQQFMQAPV--------FYGPGSQPGFMPP 517
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/465 (48%), Positives = 312/465 (67%), Gaps = 55/465 (11%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ T++D +++F +FG +TS+++ RD +GK++ FGFVNF + A ++V
Sbjct: 238 NFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D+
Sbjct: 298 EELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 337 KLKELFSEFGTITSCKVMRD-PN------------------------------------- 358
KL+++F+EFG ITS KVMRD P
Sbjct: 358 KLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKKTEKKS 417
Query: 359 ----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF--- 411
G S+G GFV FS ++A+KA+ EMN +M+ +KPLYVALAQRK+ R+++L+A
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 412 SQMRPPVG------PRMPMYPPVAPGLGQQL-FYGQGPPIIP-PQ 448
+Q+R P+ M PPV GQQ F QG IP PQ
Sbjct: 478 NQLRMQQAAAAAGMPQQYMQPPVFYAPGQQPGFIPQGGRGIPFPQ 522
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/376 (56%), Positives = 283/376 (75%), Gaps = 6/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTR 217
+D G S+G+GFV F+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ T K
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTK-E 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN + ++ L +FG FG I S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 190 FTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K YVG+AQKK +R ELK KFEQ ++ + +++G+NLYVKNLDD I D++
Sbjct: 250 EMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDER 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA++EMNG++V +KPLYVALA
Sbjct: 310 LQKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ 413
QRKEER+A L Q+ Q
Sbjct: 369 QRKEERQAHLTNQYIQ 384
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 114/205 (55%), Gaps = 25/205 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQ++SV+V D +S G+G+V++ +A +A+D
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGG-KSKGFGFVSFERHEDAQKAVD 249
Query: 100 ELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNK 142
E+N LNGK I + + + D +IR G N+++KNLD ID++
Sbjct: 250 EMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGI-NLYVKNLDDGIDDE 308
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV T+ G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 309 RLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 367
Query: 203 FLRKQERESTADKTRFNNVYVKNLS 227
RK+ER++ N Y++ ++
Sbjct: 368 AQRKEERQA-----HLTNQYIQRMA 387
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 290 RYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R R++ N +I+ +
Sbjct: 348 KAVSEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYIQRM 386
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/403 (51%), Positives = 294/403 (72%), Gaps = 8/403 (1%)
Query: 11 PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVR 70
P A QP+ NN + +TSLYVG+LD SV ++ L+++F+ +G V S+R
Sbjct: 23 PAPAAEQPAVGNGEQRNNADAAN-----NTSLYVGELDPSVTEAMLFEIFSMIGTVASIR 77
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130
VCRD TRRSLGY YVN+ A + RA+++LN++ + +P RIM+S RDP +R++G GNI
Sbjct: 78 VCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNI 137
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
FIKNLD IDNKALHDTF+ FGNILSCKVAT+ G S GYGFV ++ E+A++AI +NG
Sbjct: 138 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNG 196
Query: 191 MLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
MLLNDK+V+VG + ++ER++ ++TR F NVY KN+ T+D+ +K+F +FG ITS
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC 256
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ RD DGKSK FGFVNF+D ++A ++V+ L+ F ++ +V +AQKK ERE EL+ +
Sbjct: 257 VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
E + E KF+G+NLY+KN+ +S D++L+E F+ FG ITSCK+MR P+G+SRG GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
+S EEA+KA++EMNGKM+ ++PLYVALAQRK+ RR +L+AQ
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQI 419
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/462 (47%), Positives = 302/462 (65%), Gaps = 59/462 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +A
Sbjct: 66 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKA 125
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + GKP RIM+S RDP +RK+G GNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 126 LEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSC 185
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 186 KVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMK 245
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ NVY+KN++ TE++ ++ F ++G ITS+ + RDA+GK + FGFVN+ AA+
Sbjct: 246 ANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKC 305
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE +NGK++ +E YVG+AQKK+ERE EL+ +E + E +K++G+NLY+KNL D + D
Sbjct: 306 VEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDD 365
Query: 336 DKLKELFSEFGTITSCKVMRD--PN----------------------------------- 358
+KL+ +F+EFG ITS KVMRD P
Sbjct: 366 EKLRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKK 425
Query: 359 -----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA---- 409
G S+G GFV F+ ++A+KA+ EMN +MV KPLYVALAQRKE R+++L+A
Sbjct: 426 PERKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEASIQA 485
Query: 410 --QFSQMRPPVGPRMPMY--PPVAPGLGQQLFYGQGPPIIPP 447
Q + +P Y PPV + GQ P +PP
Sbjct: 486 RNQLRMQQQAAQAGLPQYMQPPV-------YYPGQQPGFLPP 520
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/385 (56%), Positives = 282/385 (73%), Gaps = 5/385 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL +N++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD+ IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+GYGFV F+ EE+A ++I+K+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 LDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ K+ + G+NLYVKNLDDSI D++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +GTITS KVM D G S+G GFV F + EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM 422
QRKEER+A L +Q+ MR G RM
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRM 385
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 18/189 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV + +D +L D F G++ S +V +S G+G+V + A A+
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSK-EDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 100 ELNFTPL-NGKPIRIMYSYRDPTIRK---------------SGAG-NIFIKNLDKSIDNK 142
LN + GK + + + + ++ S G N+++KNLD SID++
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDE 301
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS +G I S KV TD G+S+G+GFV F + A A+ +LNG ++ K ++V
Sbjct: 302 RLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVAL 361
Query: 203 FLRKQERES 211
RK+ER++
Sbjct: 362 AQRKEERKA 370
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/379 (55%), Positives = 277/379 (73%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S DP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G SRG GFV FS+ EEA+KA+TEMNG +V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
+LA RKEER+A L ++ Q
Sbjct: 366 SLAHRKEERQAYLTNEYMQ 384
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/405 (53%), Positives = 289/405 (71%), Gaps = 26/405 (6%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN---- 89
A + SLYVG+L + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+
Sbjct: 5 APNYPMASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 90 ------------------AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
+ A RALD +NF + G+PIRIM+S RDP++RKSG GN+F
Sbjct: 65 VVVVGDGGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVF 124
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLDK+IDNKA++DTFS FGNILSCKV D G S+GYGFV F+ EE+A +I+K+NGM
Sbjct: 125 IKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGM 184
Query: 192 LLNDKQVFVGPFLRKQEREST-ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLN K+V+VG F+ ++ER+ +K + F NVYVKN E T+D LK++F ++G ITS
Sbjct: 185 LLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHK 244
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
VM DGKS+ FGFV F+DP+ A ++V LNGK+ + K YVG+AQKK ER+ ELK KF
Sbjct: 245 VMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQELKRKF 304
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
EQ E ++++G+NLYVKNLDD+I D++L++ F+ FGTITS KVM + G S+G GFV
Sbjct: 305 EQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVC 363
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
FS EEA+KA+TEMNG++V SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 364 FSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQ 408
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 163/312 (52%), Gaps = 38/312 (12%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN--------- 177
++++ NL I L + FST G +LS +V D + + S GY +V F
Sbjct: 11 ASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVVGD 70
Query: 178 -------------EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224
+ A+ A+D +N ++ + + + +R+ + K+ NV++K
Sbjct: 71 GGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRI----MWSQRDPSLRKSGVGNVFIK 126
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NL + + F FG I S V +D G SK +GFV+F+ + A +S+E +NG
Sbjct: 127 NLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLL 186
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
+ K+ YVGK + ER+ EL E A F N+YVKN + ++DDKLKE+F +
Sbjct: 187 NGKKVYVGKFIPRKERQKELG--------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEK 236
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEER 403
+GTITS KVM +G SRG GFVAF A +A+ ++NGK + K +YV AQ+K ER
Sbjct: 237 YGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAER 296
Query: 404 RARLQAQFSQMR 415
+ L+ +F Q++
Sbjct: 297 QQELKRKFEQLK 308
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 164/291 (56%), Gaps = 21/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ +YD F+ G ++S +V +D S S GYG+V++ A +++++
Sbjct: 122 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGA-SKGYGFVHFETEEAANKSIEK 180
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R ++ G N+++KN + + + L + F +G I
Sbjct: 181 VNGMLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 240
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTA 213
S KV G+SRG+GFV F++ SA+ A+ LNG + + K ++VG +K ER+
Sbjct: 241 TSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQEL 300
Query: 214 DKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N N+YVKNL +T ++ L+K F FG ITS VM + +G+SK F
Sbjct: 301 KRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGF 359
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 360 GFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 410
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/388 (52%), Positives = 287/388 (73%), Gaps = 2/388 (0%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
A++G D +TSLYVG+LD SV ++ L+++F+ +G V S+RVCRD TR+SLGY Y
Sbjct: 65 ASSGTPSDGNAPKNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAY 124
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
VNY+ A + +AL+ELN++ + G+ RIM+S RDP++RK+G GNIFIKNLD +IDNKALH
Sbjct: 125 VNYHNADDGEKALEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALH 184
Query: 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205
DTFS FG ILSCKVA D G S+GYGFV F + +SA +AI+ +NGMLLNDK+V+VG +
Sbjct: 185 DTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVS 244
Query: 206 KQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+++R+S A K F NVY+KN+ T+++ +F +FG ITS ++++D GK + FGF
Sbjct: 245 RRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGF 304
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
VNF+ + A ++V+ +N +F K+ YVG+AQK++ERE EL+ ++EQ E K++G+N
Sbjct: 305 VNFESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVN 364
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L++KNL D + D+ LK FS FGTITS KVM D NG S+G GFV +S+ EEA+KA+ EMN
Sbjct: 365 LFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMN 424
Query: 384 GKMVVSKPLYVALAQRKEERRARLQAQF 411
+M+ KPLYVALAQRK+ RR++L+AQ
Sbjct: 425 QRMLAGKPLYVALAQRKDVRRSQLEAQI 452
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 155/288 (53%), Gaps = 15/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDK 187
++++ LD S+ L + FST G + S +V D++ QS GY +V + N + + A+++
Sbjct: 80 SLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEE 139
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN L+ + + +R+ + KT N+++KNL L F FG I S
Sbjct: 140 LNYSLIKGRACRI----MWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILS 195
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G SK +GFV+F D A ++E +NG +DK+ YVG + +R+ K
Sbjct: 196 CKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQ----SK 251
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
FE A K N+Y+KN+D ++D++ LF +FG ITS +++D +G RG GFV
Sbjct: 252 FE------AMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFV 305
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
F + E A KA+ EMN K LYV AQ++ ER A L+ ++ QM+
Sbjct: 306 NFESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMK 353
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 163/294 (55%), Gaps = 21/294 (7%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD ++++ L+D F+ G ++S +V D S GYG+V++ + A
Sbjct: 162 RKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSCKVALD-EYGNSKGYGFVHFASIDSA 220
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A++ +N LN K + + + S RD + K+ N++IKN+D + ++ F
Sbjct: 221 NAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLF 280
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I S + D G+ RG+GFV F++ E+A+ A+D++N + K+++VG ++ E
Sbjct: 281 EKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHE 340
Query: 209 RESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
RE+ K R+ N+++KNLS+ ++ LK F FG ITS VM D +
Sbjct: 341 REAELRK-RYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDEN 399
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
GKSK FGFV + P++A +++ +N + K YV AQ+K R +L+ + +
Sbjct: 400 GKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRKDVRRSQLEAQIQ 453
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L++ +L V+D+ L F+ G + S +V D +S G+G+V Y++ EAT
Sbjct: 359 KYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTD-ENGKSKGFGFVCYSSPEEAT 417
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E+N L GKP+ + + R R I +N
Sbjct: 418 KAIAEMNQRMLAGKPLYVALAQRKDVRRSQLEAQIQARN 456
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/416 (52%), Positives = 291/416 (69%), Gaps = 16/416 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F ++ERE+ A T F
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELGARATAF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + + YVG+AQK+ ER+ ELK +FE + ++ ++ +G+NLYVKNLDDSI D+KL
Sbjct: 251 MNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+++ +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMY--------PPVAPGLGQQLFYGQGP 442
RKEER+A L Q+ Q MR GP + + P +A Q YG P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPFLGSFQQPTSYFLPAMAQPPAQAEHYGSSP 425
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 117/211 (55%), Gaps = 25/211 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L V++ L DLF+Q G+++SV+V RD S S G+G+VN+ E
Sbjct: 185 ARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPI-----------------RIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+ ++N ++G+ + R ++ +D R G N+++KNLD
Sbjct: 244 AQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIIGTK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ LS
Sbjct: 362 PLYVALAQRKEER-----KAILTNQYMQRLS 387
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/490 (46%), Positives = 316/490 (64%), Gaps = 67/490 (13%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
A+ P+P T N S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD
Sbjct: 44 ASAPTPTTAPHPQN----------SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRD 93
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
TRRSLGY YVNYN+ + +AL+ELN+T + G+P RIM+S RDP +RK+G GN+FIKN
Sbjct: 94 AVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKN 153
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ +E+A AI +NGMLLN
Sbjct: 154 LDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLN 213
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+K+V+VG + K++R+S + K F NVYVKN+ T+D+ +++F +FG +TS+++ R
Sbjct: 214 EKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLAR 273
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D +GK + FGFVNF + A ++VE LNGK F +E YVG+AQKK+ERE EL+ +E +
Sbjct: 274 DQEGKPRGFGFVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAAR 333
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PN------------- 358
E A+K++G+NLY+KNLDD + D+KL+++F+EFG ITS KVMRD P
Sbjct: 334 LEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDK 393
Query: 359 ----------------------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
G S+G GFV FS ++A+KA+ EMN +M+ +K
Sbjct: 394 ENQKEAENEAESAESAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNK 453
Query: 391 PLYVALAQRKEERRARLQAQF---SQMRPPVG------PRMPMYPPVAPGLGQQLFY--- 438
PLYVALAQRK+ R+++L+A +Q+R P+ M PPV GQQ +
Sbjct: 454 PLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAPGQQPGFIPQ 513
Query: 439 -GQGPPIIPP 447
G+G P P
Sbjct: 514 GGRGMPFPQP 523
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/449 (49%), Positives = 303/449 (67%), Gaps = 18/449 (4%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
P + A A+ A NG + + F S LYVGDLD SV +S LY++F+++GQV
Sbjct: 30 PASEKADGAKSEEAENGKDTKDSKDNEQTFAS--LYVGDLDPSVTESDLYEIFSKVGQVS 87
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRB T++SL Y YVNY EA ALD L F + GK RIM+S RDP++RK G
Sbjct: 88 SIRVCRBAVTKKSLCYAYVNYQKREEAEHALDTLAFCDIKGKQCRIMWSQRDPSMRKKGT 147
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GN+FIKNL IDNK L+DTFSTFG ILSCK+ATD G S+G+GFV +D+ ESAK+AI+
Sbjct: 148 GNVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIEN 207
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADK--TRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLLN+ +V+V P + +++RES + F NVYVKN TED L+++F +G +
Sbjct: 208 VNGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKV 267
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD-DKEWYVGKAQKKYEREMEL 304
TST + D +GK++ FGFVNF+D +AA++V+ALN K+ + + YVG+AQKK ERE L
Sbjct: 268 TSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESL 327
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ +++Q+ +E K++G+NL+VKNLDD+I D KLKE F+ +G ITS KVM + G SRG
Sbjct: 328 RKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKSRGF 387
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMRPPVGPR 421
GFV ++ EEA++A+ EM+ +MV+ KPLYVALAQRKE R +L QF +QMR
Sbjct: 388 GFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQRKEVRHNQLSQQFQQRNQMR------ 441
Query: 422 MPMYPPVAPGLGQ---QLFYGQGPPIIPP 447
V G+GQ +FYGQ IPP
Sbjct: 442 -LQQAAVQGGMGQFVAPMFYGQNAGFIPP 469
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/416 (52%), Positives = 295/416 (70%), Gaps = 12/416 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ +G ++S+RVCR + TR SLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G P+RIM+S RDP++RKSG GN+FIKNLD+SIDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D G S+GYGFV F+ ++SA +I+K+NGMLLN K+VFVG F+ + +RE + +
Sbjct: 123 QDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLY 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN+ E E +L ++F ++G ITS VM DG S+ FGFV F+DP +A ++V
Sbjct: 183 TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+GKK + K +YV +AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D++
Sbjct: 243 LHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDER 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS FGTI S KVM D +G S+G GFV FS+ EEA+KA+T+MNG++V +KPLYV LA
Sbjct: 303 LRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLA 361
Query: 398 QRKEERRARLQAQFSQMRPPVGPRMPMYPPV-APGLGQQLFYGQGPPIIP-PQVIY 451
QRK++R+A L +Q+SQ + RM P+ PG F P IP PQ Y
Sbjct: 362 QRKKDRKAHLDSQYSQRNTNM--RMQSIGPIYQPGASNGYFV----PTIPQPQYFY 411
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHE 93
R + T++Y+ ++D +VN+ +L+++F + G + S +V +D + R G+G+V + E
Sbjct: 178 RAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSR--GFGFVAFEDPKE 235
Query: 94 ATRALDELNF-----------------TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
A +A+ EL+ T + R Y+ I + N+++KNLD
Sbjct: 236 AEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLD 295
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+ID++ L FS FG I S KV D G+S+G+GFV F + E A A+ +NG ++ K
Sbjct: 296 DTIDDERLRREFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAVTDMNGRIVGTK 354
Query: 197 QVFVGPFLRKQERESTAD 214
++V RK++R++ D
Sbjct: 355 PLYVTLAQRKKDRKAHLD 372
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/449 (49%), Positives = 311/449 (69%), Gaps = 21/449 (4%)
Query: 10 APVAVAAQPSPATNGIANNGG--VGDARQF--VSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
APVA+ TN + N G D+ Q S SLYVG+L+ SVN++ L+++F+ +GQ
Sbjct: 21 APVAIQE-----TNVSSGNEGEDAADSTQLPDTSASLYVGELNPSVNEASLFEIFSPVGQ 75
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V S+RVCRD T++SLGY YVN++ + +A+D+LN++ ++G+P RIM+S RDP++R++
Sbjct: 76 VSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWSQRDPSLRRN 135
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GNIFIKNL +IDNKALHDTFS FG ILSCKVATD G S+ +GFV ++ E+A++AI
Sbjct: 136 GEGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAI 195
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+ +NGMLLND++V+VG + K++RES + K F NVYVKN+ +E++++ +F +G
Sbjct: 196 ENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYG 255
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
ITS + +DA+GKSK FGFVNF+ + A ++VE LN K + + YVG+AQKK ER E
Sbjct: 256 KITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEE 315
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK ++E + E K++G+NL+VKNLDDSI KL+E F FGTITS +VM D +G S+G
Sbjct: 316 LKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKG 375
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMP 423
GFV FS+ EEA+KA+TEMN +M KPLYVALAQRK+ RR++L+ Q +M
Sbjct: 376 FGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQARN-----QMR 430
Query: 424 MYPPVAPG--LGQ---QLFYGQGPPIIPP 447
M A G GQ +FYGQ P PP
Sbjct: 431 MQNAAATGGIPGQFIPPMFYGQQPGFFPP 459
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/455 (49%), Positives = 305/455 (67%), Gaps = 34/455 (7%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
+Q +PQ VA A+ P + + + S SLYVG+LD SV+++ LYD+F+ +
Sbjct: 17 IQDEPQQNVAPASN-EPESQKVETS----------SASLYVGELDPSVSEALLYDIFSPI 65
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
G V S+RVCRD T+ SLGY YVN+N A+++LN+ P+ G P RIM+S RDP++R
Sbjct: 66 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMR 125
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K G+GNIFIKNL IDNKALHDTFS FGNILSCK+ATD G SRG+GFV F+++E+AK
Sbjct: 126 KKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKE 185
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AID +NGMLLN ++V+V + K++R+S D K F NVYVKN+ T +++ ++ F +
Sbjct: 186 AIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTGDEEFEEFFTK 245
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS + +D +GK + FGFVN+++ +DAA++VE LN F + +VG+AQKK+ER
Sbjct: 246 VGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQKKHERL 305
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
ELK ++E E +K++G+NL+VKNLDD+I D KL+E F+ +GTITS KVMR NG S
Sbjct: 306 QELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENGKS 365
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR--- 415
+G GFV FST EEA+KA+TE N ++V KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 366 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQ 425
Query: 416 -------PPVGPRMPMYPPVAPGLGQQLFYGQGPP 443
G R PP +FYG PP
Sbjct: 426 VTAAAAAAAAGMRGQFMPP--------MFYGVMPP 452
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/379 (54%), Positives = 280/379 (73%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG GNIF+KNLDKSI+NK L+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NG LLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 VKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKE+R+A L ++ Q
Sbjct: 366 ALAQRKEDRQAHLTNEYMQ 384
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 288/382 (75%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 DQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN+++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L Q +QMR
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMR 418
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/414 (51%), Positives = 294/414 (71%), Gaps = 14/414 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL+ SV ++ L+++FN +G V S+RVCRD TRRSLGYGY+NY +A RALD
Sbjct: 66 SLYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDIADAERALDT 125
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+T + G P+RIM+S RDP +R++G GNIFIKNL +ID+KALHDTFS FG ILSCK+A
Sbjct: 126 LNYTTVRGNPVRIMWSNRDPALRRAGTGNIFIKNLHTTIDHKALHDTFSAFGKILSCKIA 185
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D +S G+GFV ++ E A++AI +NGMLLND+QV+VG + K+ER ST ++ R F
Sbjct: 186 MDG-ERSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYVGLHISKKERSSTIEEKRSKF 244
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKN+ + + +++F FG S +M D +G SK FGFVN+++ +DA R+VE
Sbjct: 245 TNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEE 304
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
++ K+ K+ YVG+AQKK+ERE EL+ ++E+ +E K++G+NL+VKN+D+SI D+KL
Sbjct: 305 MHEKEIGGKQIYVGRAQKKFEREEELRRQYEKIREEKLSKYQGVNLFVKNIDESIDDEKL 364
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
++ FS FG ITS K+M D GIS+G GFV FS +EA+KA+TEMN +M+ +KP+YVALA
Sbjct: 365 RQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKAVTEMNNRMLANKPIYVALA 424
Query: 398 QRKEERRARLQAQFSQ--MRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQV 449
QRKE RR +L AQ Q MR M PP PG +FY G +PPQ
Sbjct: 425 QRKEVRRQQLAAQMQQRAMR----AHQQMMPPGYPGA--SIFYPPGG--VPPQA 470
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V ++D S++D +L F+ G + S ++ D T S G+G+V ++ EAT
Sbjct: 344 KYQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEAT 403
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130
+A+ E+N L KPI + + R R+ A +
Sbjct: 404 KAVTEMNNRMLANKPIYVALAQRKEVRRQQLAAQM 438
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/375 (55%), Positives = 281/375 (74%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
D G S+G+GFV F+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ +T+ F
Sbjct: 132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + + L +FG FG + S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG AQKK +R +ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA++EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 370 RKEERQAHLTNQYIQ 384
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 25/205 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQV+SV+V D +S G+G+V++ +A +A+D
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 100 ELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNK 142
E+N LNGK I + + + D IR G N+++KNLD ID++
Sbjct: 250 EMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGI-NLYVKNLDDGIDDE 308
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV T+ G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 309 RLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 367
Query: 203 FLRKQERESTADKTRFNNVYVKNLS 227
RK+ER++ N Y++ ++
Sbjct: 368 AQRKEERQA-----HLTNQYIQRMA 387
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 290 RYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R R++ N +I+ +
Sbjct: 348 KAVSEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYIQRM 386
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/401 (52%), Positives = 293/401 (73%), Gaps = 9/401 (2%)
Query: 20 PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
P++ GGV + S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++
Sbjct: 47 PSSEEQGELGGVAEN----SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKK 102
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVNY+ + +A+DELN++ + G+P RIM+S RDP+ R+SG GNIFIKNL +I
Sbjct: 103 SLGYAYVNYHKFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAI 162
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DNKALHDTFS FG ILSCKVATD +GQS+ +GFV ++ E+A++AI+ +NGMLLND++VF
Sbjct: 163 DNKALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVF 222
Query: 200 VGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
VG + K++RES + K + N+YVKN+ TE + +++F +G ITS + +D DGK
Sbjct: 223 VGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGK 282
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD 317
SK FGFVN+++ A +VEALN K+ + ++ YVG+AQKK ER ELK ++E E
Sbjct: 283 SKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLS 342
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
K++G+NL++KNLDD I +KL+E F FGTITS KVM D G S+G GFV FST EEA+K
Sbjct: 343 KYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATK 402
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
A+TEMN +M+ KPLYVALAQRK+ RR++L+ Q +QMR
Sbjct: 403 AITEMNQRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMR 443
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 288/382 (75%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L Q +QMR
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMR 418
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/375 (57%), Positives = 279/375 (74%), Gaps = 3/375 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKV
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR- 217
ATD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K +
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 278 ALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
ALNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDD 301
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVAL
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVAL 361
Query: 397 AQRKEERRARLQAQF 411
AQRKEER+A L +Q+
Sbjct: 362 AQRKEERKAHLASQY 376
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 158/290 (54%), Gaps = 16/290 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + ++ L D FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N L+ +K + + +R+ + ++ NV++KNL + F FG I
Sbjct: 62 TMNFDLVRNKPIRI----MWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G SK +GFV+F+ + A S++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
E A F N+YVKN + D+KLKE F +G ITS KVM +G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 367 VAFSTAEEASKALTEMNGK-MVVSKPLYVALAQRKEERRARLQAQFSQMR 415
VAF T E A A+ +NGK M K LYVA AQ+K ER+ L+ +F +++
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/389 (53%), Positives = 283/389 (72%), Gaps = 8/389 (2%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
N+GG G + SLYVGDL V ++ LY F+ G +VS+RVCRD+ TRRSLGY Y+
Sbjct: 2 NSGGPG----YPLASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYI 57
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
N+ +A ALD +N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D SIDNKAL+D
Sbjct: 58 NFQQPADAECALDTMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYD 117
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
TFS FGNILSCKV D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F +
Sbjct: 118 TFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 207 QEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
+ERE +F N+Y+KN + T++ LK+ F FG S VMRD G+S+ FGFV
Sbjct: 177 KEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFV 236
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
N+ +DA ++V+ +NGK+ + K YVG+AQK+ ER+ ELK KF+Q ++ +++G+NL
Sbjct: 237 NYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNL 296
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
YVKNLDDSI D++L++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG
Sbjct: 297 YVKNLDDSIDDERLRKEFSPYGTITSAKVMTEA-GQSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 385 KMVVSKPLYVALAQRKEERRARLQAQFSQ 413
++V +KPLYVALAQR+EER+A L ++ Q
Sbjct: 356 RIVATKPLYVALAQRREERKAILTNKYMQ 384
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 167/292 (57%), Gaps = 25/292 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ ++D S+++ LYD F+ G ++S +V D R S GYG+V++ A RA++
Sbjct: 100 NIFIKNIDDSIDNKALYDTFSAFGNILSCKVVCD--ERGSKGYGFVHFETQEAANRAIET 157
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGN 153
+N LN + + + + ++ R+ G NI+IKN ++ ++ L + FS FG
Sbjct: 158 MNGMLLNDRKVFVGH-FKSRKEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGK 216
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
LS +V D G+SRG+GFV + + E A+ A+D++NG +N K ++VG ++ ER+
Sbjct: 217 TLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGEL 276
Query: 214 DKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
K +F+ N+YVKNL ++ ++ L+K F +G ITS VM +A G+SK
Sbjct: 277 -KRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVMTEA-GQSKG 334
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FGFV F P++A ++V +NG+ K YV AQ++ ER+ L K+ Q +
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRM 386
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L+ FS G I+S +V D + + S GY ++ F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ K+ N+++KN+ ++ L F FG I
Sbjct: 71 TMNYDVIKGRPIRI----MWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D G SK +GFV+F+ + A R++E +NG +D++ +VG + + ERE+E
Sbjct: 127 SCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGT 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K +K T N+Y+KN D+++D+KLKE FS FG S +VMRD G SRG GF
Sbjct: 186 KV---MKFT-------NIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V ++ E+A KA+ EMNGK + K +YV AQ++ ER+ L+ +F Q++
Sbjct: 236 VNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLK 284
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 288/382 (75%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L Q +QMR
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMR 418
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 288/382 (75%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L Q +QMR
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMR 418
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/419 (52%), Positives = 291/419 (69%), Gaps = 15/419 (3%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+S+SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVNY +A RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN TP+ GK RIM+S RDP++RKSG GN+FIKNLDK ID+KAL+DTFS FGNILSC
Sbjct: 68 LDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD S+G+GFV ++ +ESA AI K+NGM++N ++VFVGPF +ER + +
Sbjct: 128 KVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE-VK 186
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NV+ KNLSE D LK++ ++G IT+ +M D GKSK FGF NF+ + A VE
Sbjct: 187 FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVE 246
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
NGK F K Y G+AQKK ERE ELK FE K++G+NLY+KN+DDSI +DK
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDNDK 299
Query: 338 LKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E+FS+FGTITS VM+D S+G GFV ++ +EA++A+TEMNG+M+ +KPLYVAL
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYSFLL 455
AQRK+ RRA+L+ Q Q + G R M P G +F+ P + PQV+Y ++
Sbjct: 360 AQRKDIRRAQLEMQHQQ-KFKTGIRQQMPPTYGSG---PVFFTPAP--VNPQVVYQQMM 412
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ ++D S+++ +L ++F+Q G + S V +D S G+G+V Y A EAT
Sbjct: 280 KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N + KP+ + + R
Sbjct: 340 RAVTEMNGRMIGTKPLYVALAQR 362
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/478 (47%), Positives = 307/478 (64%), Gaps = 72/478 (15%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 60 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKA 119
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 120 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 179
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 180 KVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 239
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN+ T+++ +++F +FG +TS ++ RD D GKS+ FGFVNF + + AA
Sbjct: 240 ANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAAT 299
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNLDD +
Sbjct: 300 AVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVD 359
Query: 335 DDKLKELFSEFGTITSCKVMRDPN------------------------------------ 358
D+KL+ELF+ FG ITS KVMRD
Sbjct: 360 DEKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKADGEKKEA 419
Query: 359 --------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410
G S+G GFV FS +EA+KA+ +MN MV KPLYVALAQRK+ R+ +L+A
Sbjct: 420 PKSEKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRKDVRKGQLEAS 479
Query: 411 F---SQMR----------PPVGPRMPM-YPPVAPGLGQQLFY-----GQGPPIIPPQV 449
+Q+R PP + PM YPP GQQ + G+G P PPQ
Sbjct: 480 IQARNQIRMQQAAAQAGMPPQYMQAPMFYPP-----GQQPGFMPAAGGRGMP-YPPQA 531
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 288/382 (75%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L Q +QMR
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMR 418
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/426 (51%), Positives = 292/426 (68%), Gaps = 23/426 (5%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLYVKNLDD D
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 396 LAQRKEERRARLQAQFSQ--------------MRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
LAQRK+ RR L++Q +Q M+ +G M YPP+ PG GQ +
Sbjct: 404 LAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPM-PGYGQPM----- 457
Query: 442 PPIIPP 447
P +PP
Sbjct: 458 -PGMPP 462
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/402 (51%), Positives = 291/402 (72%), Gaps = 7/402 (1%)
Query: 16 AQPSPATNGIANNGG----VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
+ P+PAT A G +TSLYVG+LD SV ++ L+++FN +G V S+RV
Sbjct: 18 SNPAPATEQPAAGNGEQANRNADAAANNTSLYVGELDPSVTEAMLFEIFNMIGPVASIRV 77
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD TRRSLGY YVN+ A + RA+++LN++ + +P RIM+S RDP +R++G GNIF
Sbjct: 78 CRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIF 137
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLD IDNKALHDTF+ FGNILSCKVAT G S GYGFV ++ E+A +AI +NGM
Sbjct: 138 IKNLDAGIDNKALHDTFAAFGNILSCKVATSESG-SLGYGFVHYETAEAADAAIKHVNGM 196
Query: 192 LLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLNDK+V+VG + ++ER++ +++R F NVY KN+ T+++ +K+F ++G ITS
Sbjct: 197 LLNDKKVYVGHHIPRKERQAKIEESRARFTNVYCKNVDADVTDEEFEKLFTKYGKITSCV 256
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ RD DGKSK FGFVNF++ D+A +V+ L+ F ++ +V +AQKK ERE EL+ +E
Sbjct: 257 LQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYE 316
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+ E KF+G+NLY+KN+ +S D++L++ F+ FG ITSCK+MR P+G+SRG GFV +
Sbjct: 317 AAKNEKLAKFQGVNLYLKNIPESYDDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVCY 376
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
S EEA+KA++EMNGKM+ ++PLYVALAQRK+ RR +L+AQ
Sbjct: 377 SAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQI 418
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/407 (54%), Positives = 285/407 (70%), Gaps = 12/407 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNILS
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +T
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 217 --RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A
Sbjct: 209 AKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAET 267
Query: 275 SVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+V+AL+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD++
Sbjct: 268 AVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDET 327
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ DD LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKPL
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 387
Query: 393 YVALAQRKEERRARLQAQFSQ------MRPPVGPRMPMYPPVAPGLG 433
YVA+AQRKE+RRA+L +Q+ Q M V P MY P PG G
Sbjct: 388 YVAIAQRKEDRRAQLASQYMQRLASMRMHGNV-PGAAMYNPTQPGPG 433
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/426 (51%), Positives = 292/426 (68%), Gaps = 23/426 (5%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 46 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 105
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 106 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 165
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 166 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 225
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 226 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQA 285
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLY+KNLDD D
Sbjct: 286 VDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDD 345
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 346 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 405
Query: 396 LAQRKEERRARLQAQFSQ--------------MRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
LAQRK+ RR L++Q +Q M+ +G M YPP+ PG GQ +
Sbjct: 406 LAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPM-PGYGQPM----- 459
Query: 442 PPIIPP 447
P +PP
Sbjct: 460 -PGMPP 464
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 288/382 (75%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L Q +QMR
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMR 418
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/375 (54%), Positives = 276/375 (73%), Gaps = 2/375 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD ++ ++ LYD+F+ +G + S+RVCRD T+ SLGY YVNY +A+
Sbjct: 49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAI 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
ELN+ +NG+P RIM+S RDP IRK G+GNIFIKNL +IDNKALH+TFSTFG +LSCK
Sbjct: 109 QELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G SRG+GFV F E AK AI+ +NGML+N +V+V + K++R S + K
Sbjct: 169 VALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ TT+++ +++F ++G I S A+ +DA+GK K FGFVNF D + AA++V
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F + YVG+AQKKYER ELK ++EQ E KF+G+NL++KNLDDSI D+
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDE 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE F+ +GTITS +VMRD G S+G GFV FS+ EEA+KA+TE N ++V KPLYVA+
Sbjct: 349 KLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 397 AQRKEERRARLQAQF 411
AQRK+ RR++L Q
Sbjct: 409 AQRKDVRRSQLAQQI 423
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/443 (50%), Positives = 308/443 (69%), Gaps = 24/443 (5%)
Query: 7 QPQAPVAVA---AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
QP A A A+ ++G+A N S SLYVG+L+ SVN++ L+++F+ +
Sbjct: 25 QPAAATTTADQSAEEQGESSGVAEN----------SASLYVGELNPSVNEATLFEIFSPI 74
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R
Sbjct: 75 GQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGRPCRIMWSQRDPSAR 134
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+SG GNIFIKNL +IDNKALHDTFS FG ILSCKVA D GQS+ +GFV ++ E+A++
Sbjct: 135 RSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFGFVHYETAEAAEA 194
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI+ +NGMLLND++VFVG + K++RES + K F N+YVKN+ +E+ +K+F
Sbjct: 195 AIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAP 254
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
+G ITS + +D DGKSK FGFVNF++ D A ++VE LN K+ + ++ YVG+AQKK ER
Sbjct: 255 YGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQKKRERL 314
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
ELK ++E + E K++G+NL+VKNLDD+I +KL+E F FGTITS KVM D G S
Sbjct: 315 EELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKS 374
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPR 421
+G GFV F+T EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q +
Sbjct: 375 KGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARN-----Q 429
Query: 422 MPMYPPVAPGLGQQ----LFYGQ 440
M M A GL Q +FYGQ
Sbjct: 430 MRMQNAAAGGLPGQFMPPMFYGQ 452
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/375 (54%), Positives = 278/375 (74%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ G ++S+RVCRD+ TRRSLGY YVN+ +A ALD
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A AI+ +NGMLLND++VFVG F ++ERE + +F
Sbjct: 132 CDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMKF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E T++ LK++F FG S VM+D G+S+ FGFVN+ +DA ++V
Sbjct: 191 TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQK+ ER+ ELK KF+Q ++ +++G+NLYVKNLDDSI D++L
Sbjct: 251 MNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ +GTITS KVM D S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFAPYGTITSAKVMTD-GSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ 413
R+EER+A L ++ Q
Sbjct: 370 RREERKAILTNKYMQ 384
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 162/289 (56%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L+ FS G I+S +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ K+ N+++KN+ E+ L F FG I
Sbjct: 71 TMNYDVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D G SK +GFV+F+ + A R++E +NG +D++ +VG + + ERE+E
Sbjct: 127 SCKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGS 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A KF N+Y+KN + +D+KLKE+FS FG S +VM+D G SRG GF
Sbjct: 186 K--------AMKF--TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V ++ E+A KA+ EMNGK + K LYV AQ++ ER+ L+ +F Q++
Sbjct: 236 VNYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIK 284
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 164/292 (56%), Gaps = 25/292 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ ++D S+++ LYD F+ G ++S +V D + S GYG+V++ A RA++
Sbjct: 100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCD--EKGSKGYGFVHFETQEAANRAIET 157
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGN 153
+N LN + + + + ++ R+ G N++IKN + ++ L + FS FG
Sbjct: 158 MNGMLLNDRKVFVGH-FKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGR 216
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
LS +V D G+SRG+GFV + + E A+ A++++NG +N K ++VG ++ ER+
Sbjct: 217 TLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGEL 276
Query: 214 DKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
K +F+ N+YVKNL ++ ++ L+K F +G ITS VM D +SK
Sbjct: 277 -KRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGS-QSKG 334
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FGFV F P++A ++V +NG+ K YV AQ++ ER+ L K+ Q L
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRL 386
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 29/211 (13%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + D +L ++F+ G+ +SVRV +D RS G+G+VNY +A +A++
Sbjct: 191 TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 100 ELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKNLDKSID 140
E+N +NGK I+Y R I++ N+++KNLD SID
Sbjct: 250 EMNGKEINGK---ILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSID 306
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
++ L F+ +G I S KV TD QS+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 307 DERLRKEFAPYGTITSAKVMTDG-SQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 201 GPFLRKQERESTADKTRFNNVYVKNLSETTT 231
R++ER K N Y++ L+ T
Sbjct: 366 ALAQRREER-----KAILTNKYMQRLATLRT 391
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD S++D +L F G + S +V D S +S G+G+V +++ EA
Sbjct: 289 QRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGS--QSKGFGFVCFSSPEEA 346
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
T+A+ E+N + KP+ + + R RK+ N +++ L
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRREE-RKAILTNKYMQRL 386
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/426 (51%), Positives = 291/426 (68%), Gaps = 23/426 (5%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 46 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 105
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 106 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 165
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 166 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 225
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN++ + A ++
Sbjct: 226 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKA 285
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLY+KNLDD D
Sbjct: 286 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDD 345
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 346 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 405
Query: 396 LAQRKEERRARLQAQFSQ--------------MRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
LAQRK+ RR L++Q +Q M+ +G M YPP+ PG YGQ
Sbjct: 406 LAQRKDVRRQALESQIAQRAQQRMQYGTGFPGMQGYMGQPMYGYPPM-PG------YGQP 458
Query: 442 PPIIPP 447
P +PP
Sbjct: 459 MPGMPP 464
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/403 (53%), Positives = 290/403 (71%), Gaps = 15/403 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ S SLYVGDL ++++ L+DLF+++G ++S+R+CRD TR+SLGY YVN+ +A R
Sbjct: 3 YSSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAER 62
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+ + G PIRIM+S RDP+IRKSG GNIFIKNLDKSIDNKAL+DTFS FGNILS
Sbjct: 63 ALDTLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILS 122
Query: 157 CKVAT-----DSLG---QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
CKV D+ G +S GYGFV F+ +E+A+ AI K+NGMLLN KQVFVGPF++K E
Sbjct: 123 CKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTE 182
Query: 209 R-ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
R + +++ F N+YVKNL + E +L ++F +FG I + VMR +G SK FGF+NF
Sbjct: 183 RLKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFA 242
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
D A +++ +N K F +K+ +VG+AQKK ER +LK F++ +E +K++GLNLYVK
Sbjct: 243 DHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVK 302
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDDS+ D++L++ FS+FG ITS KVM D N SRG GFV F T E A+KALTEM+G M+
Sbjct: 303 NLDDSVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCFKTPEAANKALTEMSGHMI 361
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAP 430
SKPLYV AQ KE RR++L+AQ++ + P M P + P
Sbjct: 362 GSKPLYVNFAQPKELRRSQLEAQYNARKQP-----QMIPQMMP 399
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD SV+D +L F++ G + S +V D ++S G+G+V + A
Sbjct: 293 KYKGLNLYVKNLDDSVDDERLRQEFSKFGDITSAKVMSD--NKQSRGFGFVCFKTPEAAN 350
Query: 96 RALDELNFTPLNGKPIRIMYS 116
+AL E++ + KP+ + ++
Sbjct: 351 KALTEMSGHMIGSKPLYVNFA 371
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/462 (48%), Positives = 305/462 (66%), Gaps = 58/462 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD +RRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 179 KVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN+ TE++ +++F +FG +TS ++ RDA+ GKS+ FGFVNF + + AA
Sbjct: 239 ANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAAT 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNLDD I
Sbjct: 299 AVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDID 358
Query: 335 DDKLKELFSEFGTITSCKVMRD-------------------------------------- 356
D+KL+ELF FG+ITS KVMRD
Sbjct: 359 DEKLRELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKEGEAE 418
Query: 357 ------PN-----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
P G S+G GFV F+ +EA+KA+++MN +MV +KPLYVALAQRK+ R++
Sbjct: 419 TEEASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKDVRKS 478
Query: 406 RLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP 447
+L+A Q R + RM A G+ QQ Y Q P PP
Sbjct: 479 QLEASI-QARNQI--RMQQAAAQA-GMPQQ--YMQAPMFFPP 514
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/400 (52%), Positives = 286/400 (71%), Gaps = 12/400 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGN+LS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NG+ LND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD+I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQMR--------PPVGPRMPMYP 426
ALAQRKEER+A L ++ Q + P + P P P
Sbjct: 366 ALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPP 405
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/400 (52%), Positives = 286/400 (71%), Gaps = 12/400 (3%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGN+LS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F E+A+ AI+K+NG+ LND +VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD+I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDAID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V ++PLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQMR--------PPVGPRMPMYP 426
ALAQRKEER+A L ++ Q + P + P P P
Sbjct: 366 ALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPP 405
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/407 (54%), Positives = 284/407 (69%), Gaps = 12/407 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNILS
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +T
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 217 --RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A
Sbjct: 209 AKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAET 267
Query: 275 SVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+V+AL+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD++
Sbjct: 268 AVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDET 327
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ DD LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKPL
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 387
Query: 393 YVALAQRKEERRARLQAQFSQ------MRPPVGPRMPMYPPVAPGLG 433
YVA+ QRKE+RRA+L +Q+ Q M V P MY P PG G
Sbjct: 388 YVAIGQRKEDRRAQLASQYMQRVASMRMHGNV-PGAAMYNPTQPGPG 433
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/374 (54%), Positives = 284/374 (75%), Gaps = 3/374 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN+ A + RA++
Sbjct: 45 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 104
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ + +P RIM+S RDP +R++G GNIFIKNLD IDNKALHDTF+ FGNILSCKV
Sbjct: 105 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 164
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR-- 217
AT+ G S GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER++ +++R
Sbjct: 165 ATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAK 223
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY KN+ T++ +K+F +G ITS + RD DGKSK FGFVNF+D ++A ++V+
Sbjct: 224 FTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVD 283
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+ F ++ +V +AQKK ERE EL+ +E + E KF+G+NLY+KN+ +S D++
Sbjct: 284 ELHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 343
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E F+ FGTITSCK+MR P+G+SRG GFV +S EEA+KA++EMNGKM+ ++PLYVALA
Sbjct: 344 LREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALA 403
Query: 398 QRKEERRARLQAQF 411
QRK+ RR +L+AQ
Sbjct: 404 QRKDVRRQQLEAQI 417
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LY+ ++ S +D +L + F G + S ++ R S S G+G+V Y+ EA
Sbjct: 324 KFQGVNLYLKNIPESYDDERLREEFAPFGTITSCKIMRAPSGV-SRGFGFVCYSVPEEAN 382
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N L+ +P+ + + R
Sbjct: 383 KAVSEMNGKMLDNRPLYVALAQR 405
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/434 (50%), Positives = 292/434 (67%), Gaps = 33/434 (7%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
P++P P+ A + + G S SLYVG+LD SV ++ L++LF+ +GQV
Sbjct: 24 PESPT-----PTSAADVVQTPTASGSTNAPHSASLYVGELDPSVTEAMLFELFSSIGQVA 78
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD TRRSLGY YVNYN + RAL+ELN+T + G+P RIM+S RDP +RK+G
Sbjct: 79 SIRVCRDAVTRRSLGYAYVNYNNTADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGH 138
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI
Sbjct: 139 GNVFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKH 198
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLLN+K+V+VG + K+ER+S D K F NVYVKN+ ++D+ + +F FG I
Sbjct: 199 VNGMLLNEKKVYVGHHIPKKERQSKFDEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQI 258
Query: 246 TSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
TS ++ RD D G S+ FGFVNF + AA +V+AL+ + + +VG+AQKK+ERE EL
Sbjct: 259 TSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDALHETELKGQALFVGRAQKKHEREEEL 318
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP------- 357
+ ++E + E A K++G+NLYVKNLDD I D++L++ FS +GTITS KVMRD
Sbjct: 319 RKQYEAARIEKASKYQGVNLYVKNLDDEIDDERLRQEFSPYGTITSAKVMRDSLDSPKEK 378
Query: 358 ------------------NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
G S+G GFV FS +EASKA+ EMN +MV KPLYVALAQR
Sbjct: 379 DGEESKVGEPEEKATDKKQGKSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQR 438
Query: 400 KEERRARLQAQFSQ 413
K+ R+++L+A Q
Sbjct: 439 KDVRKSQLEASIQQ 452
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/463 (47%), Positives = 308/463 (66%), Gaps = 58/463 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +N MLLN+K+V+VG + K++R+S + K
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+S T+++ + +F ++G +TS+++ RD++GKS+ FGFVNF + AA++V
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D I DD
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSE+G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
G S+G GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+ +L+A
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 412 SQMRPPVGPRMPMYPPVAPGLGQQ-----LFY--GQGPPIIPP 447
Q R + RM A GL QQ ++Y GQ P +PP
Sbjct: 484 -QARNQL--RMQQAAAQA-GLPQQYMQTPVYYAPGQQPNFMPP 522
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/376 (55%), Positives = 278/376 (73%), Gaps = 6/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ G ++S+RVCRD+ TRRSLGY Y+N+ +A ALD
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ + G+PIRIM+S RDP +RKSG GNIFIKN+D+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ EE+A AI+ +NGMLLND++VFVG F ++ERE + +F
Sbjct: 132 CDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKALKF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+Y+KN E ++ LK++F FG S VM+D G+S+ FGFVNF +DA ++V+
Sbjct: 191 TNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K YVG+AQK+ ER+ ELK KFE ++ +++G+NLYVKNLDDSI D++L
Sbjct: 251 MNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDERL 310
Query: 339 KELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
++ F+ +GTITS KVM D P SRG GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 311 RKEFAPYGTITSAKVMTDGPQ--SRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ 413
QR+EER+A L ++ Q
Sbjct: 369 QRREERKAILTNKYMQ 384
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 23/208 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ND +L ++F G+ +SVRV +D RS G+G+VN+ +A +A+D
Sbjct: 191 TNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHEDAQKAVD 249
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N LNGK I R + I++ N+++KNLD SID++
Sbjct: 250 EMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L F+ +G I S KV TD QSRG+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 310 LRKEFAPYGTITSAKVMTDG-PQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTT 231
R++ER K N Y++ L+ T
Sbjct: 369 QRREER-----KAILTNKYMQRLATLRT 391
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD S++D +L F G + S +V D R G+G+V +++ EA
Sbjct: 289 QRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGPQSR--GFGFVCFSSPEEA 346
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
T+A+ E+N + KP+ + + R RK+ N +++ L
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRREE-RKAILTNKYMQRL 386
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/400 (53%), Positives = 291/400 (72%), Gaps = 6/400 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN++ L++ F++ G V+S+RVCRDL T+RSLGY YVN+ +A RALD
Sbjct: 16 SLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDT 75
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ P+ G+P RIM+S RDP++R+SG GNIFIKNLDKSID+KAL+DTFS FGNILSCKVA
Sbjct: 76 MNYEPIKGQPCRIMWSQRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAFGNILSCKVA 135
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRFN 219
TD S+G+GFV FD +E+A AI+K+NG LLND +V+VG F+ +++R T +
Sbjct: 136 TDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSHTNGFNQHYT 195
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV++KN E T+ L +F ++G I S VM+D +G SK FGFV+F+ + A+ +V+A+
Sbjct: 196 NVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAV 255
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+ + ++ Y G+AQKK ER EL + E+ +E +++G+NLY+KNL+D++ ++KLK
Sbjct: 256 HNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLK 315
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
FS+FG+ITS K+M D G S+G GFV FS+ EEA+KA+TEMNG++VVSKPLYVALAQR
Sbjct: 316 SEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQR 375
Query: 400 KEERRARLQAQFSQMRP---PVGPRMPMYPP-VAPGLGQQ 435
KEER+A L AQ Q P G +M MYPP PG+ Q
Sbjct: 376 KEERQAHLAAQRMQRIARGIPQG-QMQMYPPYYMPGIQNQ 414
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++++ + D+ LYD+F + G +VS V +D S G+G+V++ + A+ A+
Sbjct: 195 TNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKD-GEGLSKGFGFVSFESHEAASAAVQ 253
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
++ + +NG+ + R R + + N++IKNL+ ++ +
Sbjct: 254 AVHNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEK 313
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L FS FG+I S K+ TD G S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 314 LKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALA 373
Query: 204 LRKQERESTADKTRFNNV 221
RK+ER++ R +
Sbjct: 374 QRKEERQAHLAAQRMQRI 391
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/471 (48%), Positives = 312/471 (66%), Gaps = 62/471 (13%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD +V ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 59 SASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 119 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 178
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+S TEDD +++F ++G +TS+++ RD +GKS+ FGFVNF + AA++V
Sbjct: 239 NFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + DD
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 358
Query: 337 KLKELFSEFGTITSCKVMRD--------------------------PN------------ 358
KL+++FSEFG ITS KVMRD P
Sbjct: 359 KLRQMFSEFGPITSAKVMRDTPVENEDEKPAEEKKEEQEDKDKENKPEETKEGEEGAEKK 418
Query: 359 ---------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
G S+G GFV FS ++A+KA+ EMN +MV +KPLYVALAQRK+ R+++L+A
Sbjct: 419 AEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVRKSQLEA 478
Query: 410 QF---SQMRPPVG------PRMPMYPPVAPGLGQQLFY----GQGPPIIPP 447
+Q+R P+ M PPV GQQ + G+G P P
Sbjct: 479 SIQARNQLRMQQAAAAAGMPQQYMQPPVYFAPGQQPGFIPQGGRGMPFPQP 529
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/382 (54%), Positives = 292/382 (76%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD +++SLGY YVNY+ + +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ G+P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTFSTFG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD +GQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ +E+DLKK+F +G ITS + +DA+GKSK FGFVN++ + A ++V
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K+ + ++ YVG+AQKK ER ELK ++E + E K++G+NL++KNLDD+I +
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L+ Q +QMR
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMR 432
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/432 (51%), Positives = 304/432 (70%), Gaps = 21/432 (4%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
+A+ ++G+A N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD
Sbjct: 37 SAEEQGESSGVAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRD 86
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+++SLGY YVNY+ + +A++ELN+ P+ G+P RIM+S RDP+ R+SG GNIFIKN
Sbjct: 87 AVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKN 146
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L +IDNKALHDTFS FG ILSCKVATD GQS+ +GFV ++ E+A++AI+ +NGMLLN
Sbjct: 147 LHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 206
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++VFVG + K++RES + K F N+YVKN+ +E+ +K+F FG ITS + +
Sbjct: 207 DREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEK 266
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D DGKSK FGFVNF+D + A ++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 267 DQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
E K++G+NL+VKNLDD+I +KL+E F FGTITS KVM D G S+G GFV F+T
Sbjct: 327 LEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTP 386
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGL 432
EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q +M M A GL
Sbjct: 387 EEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARN-----QMRMQNAAAGGL 441
Query: 433 GQQ----LFYGQ 440
Q +FYGQ
Sbjct: 442 PGQFIPPMFYGQ 453
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/374 (53%), Positives = 284/374 (75%), Gaps = 3/374 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN+ A + RA++
Sbjct: 47 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 106
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ + +P RIM+S RDP +R++G GNIFIKNLD IDNKALHDTF+ FGNILSCKV
Sbjct: 107 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 166
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR-- 217
AT+ G S GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER++ +++R
Sbjct: 167 ATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAN 225
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY KN+ T+++ +K+F +G ITS + RD DGKSK FGFVNF+D ++A +V+
Sbjct: 226 FTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVD 285
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+ F ++ +V +AQKK ERE EL+ +E + E KF+G+NLY+KN+ +S D++
Sbjct: 286 ELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 345
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E F+ FG ITSCK+MR P+G+SRG GFV +S EEA+KA++EMNGKM+ ++PLYVALA
Sbjct: 346 LREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALA 405
Query: 398 QRKEERRARLQAQF 411
QRK++RR +L+AQ
Sbjct: 406 QRKDDRRQQLEAQI 419
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LY+ ++ S +D +L + F G + S ++ R S S G+G+V Y+ EA
Sbjct: 326 KFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGV-SRGFGFVCYSVPEEAN 384
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N L+ +P+ + + R
Sbjct: 385 KAVSEMNGKMLDNRPLYVALAQR 407
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/413 (55%), Positives = 299/413 (72%), Gaps = 17/413 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ +G VVSVRVCRD TRRSLGY YVN+ +A ALD
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF LNG P+RIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFEILNGCPMRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D GQS+GYGFV FD E+SA +I+K+NGMLLN K+VFVG F+ +++RE + F
Sbjct: 123 QDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN+ E + +L ++F ++G ITS VM DG S+ FGFV F+DP +A ++V
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSE 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+GK+ + K +YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D+
Sbjct: 243 LHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDDEH 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS FGTITS KVM D +G S+G GFV FS+ EEA+KA+TEMN ++V +KPLYVALA
Sbjct: 303 LRREFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVALA 361
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM----PMYPPVA------PGLGQ-QLFYG 439
QRKEER+A L AQ+ Q + RM P+Y P A P + Q Q FYG
Sbjct: 362 QRKEERKAHLNAQYLQSNTNM--RMQSIGPIYQPGASSGYFVPTIPQGQRFYG 412
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRAL 98
T++Y+ ++D +VND +L+++F + G + S +V +D + R G+G+V + EA +A+
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSR--GFGFVAFEDPKEAEKAV 240
Query: 99 DELNF--TPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
EL+ +P GK R Y+ + + N+++KNLD +ID
Sbjct: 241 SELHGKESP-EGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTID 299
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
++ L FS FG I S KV D G+S+G+GFV F + E A A+ ++N ++ K ++V
Sbjct: 300 DEHLRREFSVFGTITSAKVMMDD-GRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYV 358
Query: 201 GPFLRKQERES 211
RK+ER++
Sbjct: 359 ALAQRKEERKA 369
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D L F+ G + S +V D RS G+G+V +++ EAT
Sbjct: 283 RYQGINLYVKNLDDTIDDEHLRREFSVFGTITSAKVMMDDG--RSKGFGFVCFSSPEEAT 340
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 341 KAVTEMNNRIVGTKPLYVALAQR 363
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/376 (53%), Positives = 282/376 (75%), Gaps = 2/376 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVG+LD +V ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RAL+
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF+ FGN+LSCKV
Sbjct: 104 QLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 163
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTR 217
ATD G+S+GYGFV ++ E+A++AI +NGMLLNDK+V+VG + ++ER+S + K +
Sbjct: 164 ATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQ 223
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKN TE++ +F +FG +TS + RD +G+S+ FGFVNF+ D+A ++VE
Sbjct: 224 FTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVE 283
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+ F K+ +V +AQKK ERE EL+ +EQ+ E KF+G+NLY+KNL+D + DD+
Sbjct: 284 GLHDLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDR 343
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ F FG+ITS KVMRD G S+G GFV FS+ +EA+KA+ EMN KM+ +KPLYV+LA
Sbjct: 344 LRTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLA 403
Query: 398 QRKEERRARLQAQFSQ 413
QR++ RR +L++Q +Q
Sbjct: 404 QRRDVRRQQLESQIAQ 419
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/379 (54%), Positives = 276/379 (72%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL +NF + GKP+RIM+S RDP++RK G GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L + FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+ +N ++ K + + +R+ + K N++VKNL ++ L
Sbjct: 62 PKDAEHALHTMNFDVIKGKPLRI----MWSQRDPSLRKRGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/379 (54%), Positives = 277/379 (73%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI+K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+++
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K + + +R+ + K+ N++VKNL ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRI----MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R++E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/425 (48%), Positives = 287/425 (67%), Gaps = 53/425 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +A
Sbjct: 57 ASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKA 116
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + +P RIM+S RDP +RK+G GNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 117 LEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSC 176
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A+ AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 177 KVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 236
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
+ N+Y+KNL T+D+ +K+F ++G +TS+ + RD + GKS+ FGF+NF + AA+
Sbjct: 237 ANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAK 296
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+VE LN ++ +E YVG+AQKK+ERE EL+ +E + +E A K+ G+NLY+KNLDD +
Sbjct: 297 AVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVD 356
Query: 335 DDKLKELFSEFGTITSCKVMRDPN------------------------------------ 358
D+KL+ELF+ +G ITS KVMR+
Sbjct: 357 DEKLRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEA 416
Query: 359 --------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
G S+G GFV FS ++A+KA+TEMN +MV KPLYVA+AQ+KE R+
Sbjct: 417 DASGEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEVRK 476
Query: 405 ARLQA 409
++L+A
Sbjct: 477 SQLEA 481
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 159/291 (54%), Gaps = 16/291 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD+S+ L + FS G + S +V D++ + S GY +V +++ + A+
Sbjct: 58 SASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 117
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ ++ + +R+ KT N+++KNL L F FG I
Sbjct: 118 EELNYTLIKNRPCRI----MWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNI 173
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A ++++ +NG ++K+ YVG K +R+
Sbjct: 174 LSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 229
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGS 364
KFE+ K N+Y+KNL ++DD+ ++LF ++G +TS + RD G SRG
Sbjct: 230 SKFEEM------KANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGF 283
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
GF+ F+T E A+KA+ E+N + + + LYV AQ+K ER L+ + R
Sbjct: 284 GFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAAR 334
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 160/344 (46%), Gaps = 70/344 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A
Sbjct: 142 RKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAA 200
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
+A+ +N LN K + + + +D + K+ NI+IKNL + + F
Sbjct: 201 QQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLF 260
Query: 149 STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
+G + S +A D G+SRG+GF+ F ESA A+++LN ++ ++++VG +K
Sbjct: 261 EQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKH 320
Query: 208 ERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-- 253
ERE A K N+Y+KNL + ++ L+++F +G ITS VMR+
Sbjct: 321 EREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEKLRELFAPYGPITSAKVMRETA 380
Query: 254 -----------------------------------AD-------------GKSKCFGFVN 265
AD GKSK FGFV
Sbjct: 381 SESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEADASGEKQAAARPKLGKSKGFGFVC 440
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
F +PDDA ++V +N + K YV AQKK R+ +L+ +
Sbjct: 441 FSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEVRKSQLEASIQ 484
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/379 (54%), Positives = 277/379 (73%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI+K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+++
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K + + +R+ + K+ N++VKNL ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRI----MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R++E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/379 (54%), Positives = 276/379 (72%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL +NF + GKP+RIM+S RDP++RK G GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L + FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+ +N ++ K + + +R+ + K N++VKNL ++ L
Sbjct: 62 PKDAEHALHTMNFDVIKGKPLRI----MWSQRDPSLRKRGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/379 (54%), Positives = 277/379 (73%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+RVCRDL TR S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI+K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+++
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K + + +R+ + K+ N++VKNL ++ L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRI----MWSQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R++E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/518 (44%), Positives = 316/518 (61%), Gaps = 87/518 (16%)
Query: 10 APVAVAAQPS--PATNG------IANNGGVGDARQFV--------STSLYVGDLDLSVND 53
+P AA PS PATNG + G +G+ S SLYVG+LD SV +
Sbjct: 9 SPAGQAAAPSDAPATNGNQINTAVPAGGDIGETPTSAAPTNANPNSASLYVGELDPSVTE 68
Query: 54 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
+ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN+A + RAL+ELN+T + GKP RI
Sbjct: 69 AMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEELNYTLIKGKPCRI 128
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV
Sbjct: 129 MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGNSKGYGFV 188
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTT 231
++ ++A AI +NGMLLN+K+VFVG + K++R S + K F N+YVKN+ TT
Sbjct: 189 HYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETT 248
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+D+ +++F ++G ITS ++ D GK + FGFVNF +DAA++V+ LN F ++ YV
Sbjct: 249 DDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYV 308
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK+ERE EL+ ++E +E + K++G+NLYVKNL D I D++L+++F +G ITS
Sbjct: 309 GRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAITSA 368
Query: 352 KVMRDPNGISR------------------------------------------------- 362
KVMRD + +
Sbjct: 369 KVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKDDADELAKKLDTVTIGGEKKVLG 428
Query: 363 ---GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS------- 412
G GFV FS +EA+KA+TE+N KM+ SKPLYVALAQRKE R+++L+A
Sbjct: 429 KSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALAQRKEVRKSQLEASIQARNQVRM 488
Query: 413 QMRPPVG--PRMPMYPPVAPGLGQQLFYG-QGPPIIPP 447
Q + G P+ M PP Q+F G G P++ P
Sbjct: 489 QQQATAGGLPQQFMAPP-------QMFIGPNGQPMMIP 519
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/390 (54%), Positives = 281/390 (72%), Gaps = 9/390 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F TSLYVGDL V ++ LY+ F+ GQ++S+RVCRD T++SLGY YVN++ EA R
Sbjct: 9 FPLTSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAER 68
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LD +NF L GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILS
Sbjct: 69 VLDTMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILS 128
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE-STADK 215
CKVA D G S+GYGFV F++ E+A AI+K+NGMLLN K+V+VG F+ + ERE +K
Sbjct: 129 CKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEK 188
Query: 216 T-RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+ ++ NVYVKN T++ L +F +G ITS VM + DG SK FGF+ F++P+ A +
Sbjct: 189 SKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEK 248
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V +N + + YVG+AQKK ER ELK +EQ E ++ +G N+Y+KNLDD+
Sbjct: 249 AVTEMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFD 308
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+D+L++ FS+FG ITS KVM + G S+G GFV FST EEASKA+TEM+G+M+ SKP+YV
Sbjct: 309 NDRLRKEFSQFGAITSAKVMTE-GGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYV 367
Query: 395 ALAQRKEERRARLQAQFSQ------MRPPV 418
ALAQR E+RRA L AQ Q M PP+
Sbjct: 368 ALAQRYEDRRAYLSAQCMQRIRHQTMSPPL 397
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/375 (54%), Positives = 273/375 (72%), Gaps = 4/375 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD T RSLGY YVN+ +A R + +
Sbjct: 111 SLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTD 170
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + GKP+R+M+S RDP++RKSG GN+F+KNL+KSI+NK+L+D FS+FGNILSCKV
Sbjct: 171 MNLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVI 230
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
TD G S+GYGFV F++ ESA+ AI K+NG+LLND ++FVG F +++RES A F
Sbjct: 231 TDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESELGAQTREF 289
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ED L KIF +FG S VMRD G+SK FGFVNF +DA +++
Sbjct: 290 TNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDN 349
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + ++ Y G+AQKK ER+ +L+ FEQ + +++G+NLY+KNLDD I D+ L
Sbjct: 350 MNGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENL 409
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + NG S+G GFV FS EEA+ A+TEMNG++V SKPLYVALAQ
Sbjct: 410 RKEFSSFGTITSAKVMMN-NGRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQ 468
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 469 RKEERKAHLANQYVQ 483
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD ++D L F+ G + S +V ++ RS G+G+V ++A EAT
Sbjct: 389 RYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVM--MNNGRSKGFGFVCFSAPEEAT 446
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDK 137
A+ E+N + KP+ + + R RK+ N +++ + +
Sbjct: 447 TAVTEMNGRLVASKPLYVALAQRKEE-RKAHLANQYVQRMAR 487
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/454 (48%), Positives = 292/454 (64%), Gaps = 14/454 (3%)
Query: 12 VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
A AQP+P + G + S SLYVG+LD SV ++ L+++FN +G V S+RV
Sbjct: 36 AAKPAQPAPTST-------TGQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRV 88
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD TRRSLGY YVNY A + RAL+ LN++ + +P RIM+S RDP +RK+G GNIF
Sbjct: 89 CRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIF 148
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLD IDNKALHDTF+ FGNILSCKVATD G SRG+ FV ++ E+A +AI +NGM
Sbjct: 149 IKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGM 208
Query: 192 LLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLNDK+V+VG + K+ER+S ++ R F N+++KNL T+ DL+ +F FG I S A
Sbjct: 209 LLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAA 268
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ DG SK F FVN+ D A ++V+ LN K+ + K+ YVG+AQK+ ER+ EL+ E
Sbjct: 269 LSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHE 328
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+ E K G+NLYVKN+DD DD+L+ F GTITS KVMRD G SRG GFV F
Sbjct: 329 ERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCF 388
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVA 429
S +EA++A+ EMNGKM+ +KPLYV+LAQ+KE RR L++Q Q + A
Sbjct: 389 SQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQRN-----AQRLQYAAA 443
Query: 430 PGLGQQLFYGQGPPIIPPQVIYSFLLIDYFNALV 463
GLG Y Q P PP Y ++ +V
Sbjct: 444 NGLGGPQGYMQAPMYYPPMGPYGGPMMPVRGGVV 477
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/454 (48%), Positives = 292/454 (64%), Gaps = 14/454 (3%)
Query: 12 VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
A AQP+P + G + S SLYVG+LD SV ++ L+++FN +G V S+RV
Sbjct: 36 AAKPAQPAPTST-------TGQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRV 88
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD TRRSLGY YVNY A + RAL+ LN++ + +P RIM+S RDP +RK+G GNIF
Sbjct: 89 CRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIF 148
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLD IDNKALHDTF+ FGNILSCKVATD G SRG+ FV ++ E+A +AI +NGM
Sbjct: 149 IKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGM 208
Query: 192 LLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLNDK+V+VG + K+ER+S ++ R F N+++KNL T+ DL+ +F FG I S A
Sbjct: 209 LLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAA 268
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ DG SK F FVN+ D A ++V+ LN K+ + K+ YVG+AQK+ ER+ EL+ E
Sbjct: 269 LSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHE 328
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+ E K G+NLYVKN+DD DD+L+ F GTITS KVMRD G SRG GFV F
Sbjct: 329 ERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCF 388
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVA 429
S +EA++A+ EMNGKM+ +KPLYV+LAQ+KE RR L++Q Q + A
Sbjct: 389 SQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQRN-----AQRLQYAAA 443
Query: 430 PGLGQQLFYGQGPPIIPPQVIYSFLLIDYFNALV 463
GLG Y Q P PP Y ++ +V
Sbjct: 444 NGLGGPQGYMQAPMYYPPMGPYGGPMMPVRGGVV 477
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/379 (54%), Positives = 275/379 (72%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+ +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/377 (55%), Positives = 278/377 (73%), Gaps = 8/377 (2%)
Query: 60 FNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119
F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD +NF + G+P+RIM+S RD
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRD 77
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179
P++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ E
Sbjct: 78 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHE 136
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKK 237
+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++ LK+
Sbjct: 137 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKE 196
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
+F ++G S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + ++ YVG+AQKK
Sbjct: 197 LFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKK 256
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++L++ FS FGTITS KVM +
Sbjct: 257 GERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME- 315
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ---- 413
G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 316 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMAT 375
Query: 414 MRPPVGPRMPMYPPVAP 430
+R P + Y P P
Sbjct: 376 VRAVPNPVLNPYQPAPP 392
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 87 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEK 144
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + FS +G
Sbjct: 145 MNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPA 204
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS +V TD G+S+G+GFV F+ E A+ A+D +NG LN +QV+VG +K ER++
Sbjct: 205 LSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELK 264
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 265 RKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 323
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 324 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 373
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 117/211 (55%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+F T++Y+ + ++D +L +LF++ G +S+RV D S +S G+G+V++ +
Sbjct: 174 AREF--TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSG-KSKGFGFVSFERHED 230
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+D++N LNG+ + + + + D R G N+++KNLD
Sbjct: 231 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGV-NLYVKNLD 289
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+D++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 290 DGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 348
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 349 PLYVALAQRKEERQA-----HLTNQYMQRMA 374
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/379 (54%), Positives = 275/379 (72%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+ +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 279/376 (74%), Gaps = 5/376 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FG+ILSCKV
Sbjct: 72 MNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F EE+A +I+K+NGMLLN K+V+VG F+ ++ER + +F
Sbjct: 132 CDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR-DADGKSKCFGFVNFDDPDDAARSVE 277
NV+VKN + ++ L+++F +G I S VM+ D G++K FGFV F+DP DA + +
Sbjct: 191 TNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACD 250
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LN K + + YVG+AQKK ER+ EL+ +FE E A++++G+NLYVKNLDDS+ D++
Sbjct: 251 DLNMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDER 310
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 311 LRKEFMPFGTITSAKVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 369
Query: 398 QRKEERRARLQAQFSQ 413
QRKE+R+A L +QF Q
Sbjct: 370 QRKEDRKAHLASQFMQ 385
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 110/200 (55%), Gaps = 27/200 (13%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++F T+++V + ++D L ++F + G++VS +V +D + R+ G+G+V +
Sbjct: 185 GQQKKF--TNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDP 242
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIF 131
+A A D+LN +NG RI+Y R + R G N++
Sbjct: 243 IDAENACDDLNMKDING---RILYVGRAQKKIERQAELRNRFELMKAERANRYQGV-NLY 298
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
+KNLD S+D++ L F FG I S KV ++ G+S+G+GFV F + E A A+ ++NG
Sbjct: 299 VKNLDDSLDDERLRKEFMPFGTITSAKVMSEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 357
Query: 192 LLNDKQVFVGPFLRKQERES 211
+++ K ++V RK++R++
Sbjct: 358 IVSTKPLYVALAQRKEDRKA 377
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/379 (54%), Positives = 275/379 (72%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+ +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/379 (54%), Positives = 275/379 (72%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+ +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/430 (47%), Positives = 290/430 (67%), Gaps = 52/430 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+L+ V ++ L++LF+ +G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T +NG+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 179 KVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ ++D+ + +F ++G +TS+++ RD +GKS+ FGFVNF + A+++
Sbjct: 239 ANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQA 298
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LNGK F ++ YVG+AQKK+ERE EL+ +E + +E A+K++G+NLY+KNL D + D
Sbjct: 299 VEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIKNLSDDVDD 358
Query: 336 DKLKELFSEFGTITSCKVMRDPN------------------------------------- 358
+KL+ +FSEFG ITS KVMRD
Sbjct: 359 EKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEETPAPEAEVKKEDSEADADSQEAADK 418
Query: 359 ----------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G S+G GFV FS E+A+KA+ +MN +M+ +KPLYVALAQRK+ R+ +L+
Sbjct: 419 KDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLE 478
Query: 409 AQF---SQMR 415
+QMR
Sbjct: 479 QSIQARNQMR 488
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/386 (55%), Positives = 281/386 (72%), Gaps = 11/386 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A R
Sbjct: 8 FPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILS
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G SRG+GFV F+ E+A+ AI +NGMLLND++VFVG F +QERE+ A
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEF-----GIITSTAVMRDADGKSKCFGFVNFDDP 269
F N+YVKNL E L+++F +F G + S VMRD G S+ FGFVNF+
Sbjct: 187 AMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKH 246
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE--GLNLYVK 327
++A ++V +NGK+ + YVG+AQK+ ER+ ELK KFEQ ++ +++ G+NLYVK
Sbjct: 247 EEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNLYVK 306
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDDSI+D+KL++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 307 NLDDSINDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIV 365
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQ 413
+KPLYVALAQRKEER+A L Q+ Q
Sbjct: 366 GTKPLYVALAQRKEERKAILTNQYMQ 391
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 21/294 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + +S GY ++ F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ K+ N+++KNL ++ L F FG I
Sbjct: 71 TMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D G S+ FGFV+F+ + A ++ +NG +D++ +VG + + ERE EL
Sbjct: 127 SCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAEL-- 183
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF-----GTITSCKVMRDPNGIS 361
A E N+YVKNL + + L+ELFS+F G + S KVMRD +G S
Sbjct: 184 --------GARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHS 235
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
RG GFV F EEA KA+ +MNGK V + LYV AQ++ ER+ L+ +F QM+
Sbjct: 236 RGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMK 289
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 162/299 (54%), Gaps = 32/299 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +L+ S+++ LYD F+ G ++S +V C D +R G+G+V++ A A+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAQLAIS 156
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTF- 151
+N LN + + + + ++ R++ G NI++KNL +D L + FS F
Sbjct: 157 TMNGMLLNDRKVFVGH-FKSRQEREAELGARAMEFTNIYVKNLQVDMDEWGLQELFSQFD 215
Query: 152 ----GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
G +LS KV D G SRG+GFV F+ E A+ A+ +NG + + ++VG ++
Sbjct: 216 WSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRM 275
Query: 208 ERESTADKT-------RFN-------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
ER++ + R N N+YVKNL ++ ++ L+K F +G+ITS VM +
Sbjct: 276 ERQNELKRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFSPYGMITSAKVMTE 335
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
G SK FGFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q L
Sbjct: 336 G-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 393
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 36/220 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNY 88
AR T++YV +L + +++ L +LF+Q G+++SV+V RD S S G+G+VN+
Sbjct: 185 ARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSG-HSRGFGFVNF 243
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAG 128
EA +A+ ++N + G R++Y R D R G
Sbjct: 244 EKHEEAQKAVMDMNGKEVRG---RLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRG 300
Query: 129 -NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+++KNLD SI+++ L FS +G I S KV T+ G S+G+GFV F + E A A+ +
Sbjct: 301 VNLYVKNLDDSINDEKLRKEFSPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTE 359
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
+NG ++ K ++V RK+ER K N Y++ LS
Sbjct: 360 MNGRIVGTKPLYVALAQRKEER-----KAILTNQYMQRLS 394
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/408 (53%), Positives = 282/408 (69%), Gaps = 19/408 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+K L+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND +VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +FG FG S VM D GKSK FGFV+F+ +DA ++VE
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-----------GLNLYVK 327
+NGK + K+ YVG+AQKK ER+ ELK KF Q +K+ K E G+NLYVK
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSVRCKGVNLYVK 309
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNGK+V
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIV 368
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQ--MRPPVGPRMPMYPPVAPGLG 433
+KPLYVALAQRKEER+A L Q+ Q GP P+ P P G
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPN-PVVSPFQPAQG 415
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 37/224 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPI---------------------------RIMYSYRDPTIRKSG 126
A +A++E+N LNGK I +I +D ++R G
Sbjct: 244 ARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKG 303
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+
Sbjct: 304 V-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVT 361
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
++NG ++ K ++V RK+ER++ +N Y++ ++ T+
Sbjct: 362 EMNGKIVATKPLYVALAQRKEERQA-----HLSNQYMQRMASTS 400
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/408 (53%), Positives = 282/408 (69%), Gaps = 19/408 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+K L+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND +VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +FG FG S VM D GKSK FGFV+F+ +DA ++VE
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-----------GLNLYVK 327
+NGK + K+ YVG+AQKK ER+ ELK KF Q +K+ K E G+NLYVK
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSVRCKGVNLYVK 309
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNGK+V
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIV 368
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQ--MRPPVGPRMPMYPPVAPGLG 433
+KPLYVALAQRKEER+A L Q+ Q GP P+ P P G
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPN-PVVSPFQPAQG 415
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 37/224 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPI---------------------------RIMYSYRDPTIRKSG 126
A +A++E+N LNGK I +I +D ++R G
Sbjct: 244 ARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKG 303
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+
Sbjct: 304 V-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVT 361
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
++NG ++ K ++V RK+ER++ +N Y++ ++ T+
Sbjct: 362 EMNGKIVATKPLYVALAQRKEERQA-----HLSNQYMQRMASTS 400
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/382 (52%), Positives = 280/382 (73%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD SV ++ L+++FN +G V SVRVCRD TRRSLGY YVN++ + RAL
Sbjct: 45 NASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ +P RIM+S RDP +RK+GAGNI+IKNLD +IDNKALHDTFS FG ILSCK
Sbjct: 105 EELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
+ATD G SRG+GFV +++ ESA+SAI +NGMLLNDK+VFVGP + K +R + + K
Sbjct: 165 IATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKN 224
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NV++KNL TE + +++ +FG +S + + +GK FGFV++ + D A +++
Sbjct: 225 SFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ +F + + G+A+KKYER EL+ ++E S E +K++G+NLY+KNLDD+I DD
Sbjct: 285 DGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDD 344
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ GTITS KVM D G S+G GFV +S+ EEA+KA+TEMN ++V KPLYV L
Sbjct: 345 KLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVL 404
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++LQ Q +QMR
Sbjct: 405 AQRKDVRRSQLQQQIQAKNQMR 426
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/379 (54%), Positives = 275/379 (72%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S +M D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+ +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS ++ TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S ++M D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/385 (54%), Positives = 279/385 (72%), Gaps = 14/385 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD +TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+KAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND++VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +F +FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKF----------EQSLKETADKFEGLNLYVKN 328
+NGK + K+ YVG+AQKK ER+ ELK KF EQ ++ + + +G+NLYVKN
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKN 310
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 311 LDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 369
Query: 389 SKPLYVALAQRKEERRARLQAQFSQ 413
+KPLYVALAQRKEER+A L Q+ Q
Sbjct: 370 TKPLYVALAQRKEERQAHLSNQYMQ 394
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS+ G ILS +V D + +S GY V F E A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K V + +R+ + K+ N++VKNL + L F FG I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ ++A R++E +NG +D++ +VG+ + + +R+ EL
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ + E N+Y+KNL + + D++L+ LFS+FG S KVM D +G S+G GF
Sbjct: 186 RAK----------EFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 236 VSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 37/224 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L LF++ G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR---------------------------DPTIRKSG 126
A +A+DE+N LNGK I + + + D ++R G
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQG 303
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+
Sbjct: 304 V-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVT 361
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
++NG ++ K ++V RK+ER++ +N Y++ ++ T+
Sbjct: 362 EMNGRIVATKPLYVALAQRKEERQA-----HLSNQYMQRMASTS 400
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/468 (47%), Positives = 309/468 (66%), Gaps = 59/468 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+TP+ G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+S T+++ +++F ++G +TS+++ RD +GKS+ FGFVNF + A ++V
Sbjct: 238 NFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNG F +E YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + DD
Sbjct: 298 DELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDD 357
Query: 337 KLKELFSEFGTITSCKVMRDP--------------------------------------- 357
KL+++FSEFG ITS KVMRD
Sbjct: 358 KLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEK 417
Query: 358 -----NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF- 411
G S+G GFV FS ++A+KA+ EMN +M+ +KPLYVALAQRK+ R+++L+A
Sbjct: 418 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQ 477
Query: 412 --SQMRPPVG------PRMPMYPPVAPGLGQQLFY----GQGPPIIPP 447
+Q+R P+ M PPV GQQ + G+G P P
Sbjct: 478 ARNQLRMQQAAAAAGMPQQFMQPPVFYAPGQQPGFIPQGGRGMPFPQP 525
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 270/373 (72%), Gaps = 4/373 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TR SLGY YVN+ + +A R L+
Sbjct: 3 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLET 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + GKP+RIM+S RDP++RKSG GNIF+KNL+KSIDN+AL D FS FGNILSCKV
Sbjct: 63 MNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVV 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
+D G S+GYGFV F+ +ESA+ AI+K+NG++L +VFVG F ++ERE A F
Sbjct: 123 SDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGARAREF 181
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E L +IFG FG S VM D G+SK FGFV++ +DA R+V+
Sbjct: 182 TNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDE 241
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQKK ER+ ELK FEQ ++ +++G+NLYVKNLDD+I D++L
Sbjct: 242 MNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERL 301
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FGTITS KVM + G SRG GFV FS +EA+KA+TEMNGK+V SKPLYVALAQ
Sbjct: 302 RTEFSPFGTITSAKVMME-GGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQ 360
Query: 399 RKEERRARLQAQF 411
RKEER+A L Q+
Sbjct: 361 RKEERQAHLTNQY 373
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 157/289 (54%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + +S GY +V F A+ ++
Sbjct: 2 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K V + +R+ + K+ N++VKNL ++ L F FG I
Sbjct: 62 TMNLDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ + A +++E +NG + +VG + + ERE+EL
Sbjct: 118 SCKVVSDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGA 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ E N+Y+KN + + + +L E+F FG S KVM D G S+G GF
Sbjct: 177 RAR----------EFTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGF 226
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+++T E+A +A+ EMNGK + + +YV AQ+K ER+ L+ F Q++
Sbjct: 227 VSYATHEDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIK 275
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F+ G + S +V + S G+G+V ++A EA
Sbjct: 281 RYQGVNLYVKNLDDTIDDERLRTEFSPFGTITSAKVM--MEGGHSRGFGFVCFSAPDEAA 338
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 339 KAVTEMNGKLVTSKPLYVALAQR 361
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/383 (53%), Positives = 283/383 (73%), Gaps = 5/383 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q S SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY + +
Sbjct: 106 QPSSASLYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGE 165
Query: 96 RALDELNFTPLNGKPI---RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
RAL++LN++ + GKP RIM+S RDP +RK+G GNIFIKNLD+ IDNKALHDTF FG
Sbjct: 166 RALEQLNYSLIKGKPWHVSRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFG 225
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
N+LSCKVA D G S+GYGFV ++ E+A +AI ++GMLLNDK+V+VG + ++ER+S
Sbjct: 226 NVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSK 285
Query: 213 ADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
D+ R F N+YVKNL ED+ +K+F +G ITS + DADGKSK FGFVN++ +
Sbjct: 286 LDEIRAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHE 345
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A ++V+ALN K + K+ +VG+AQK+ ER+ EL+ F+ + E K +G+NLY+KN+D
Sbjct: 346 MAQKAVDALNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNID 405
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D + D+KL+ F +GTITS K+MRD G+S+G GFV FST +EA++A+ EMN KM+ SK
Sbjct: 406 DDMDDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSK 465
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYV+LAQR++ RR +L++Q SQ
Sbjct: 466 PLYVSLAQRRDVRRQQLESQISQ 488
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LY+ ++D ++D +L F G + S ++ RD S G+G+V ++ EATRA+
Sbjct: 397 VNLYIKNIDDDMDDEKLRAEFEPYGTITSSKIMRD-DKGVSKGFGFVCFSTPDEATRAIA 455
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
E+N + KP+ + + R R+ I +N
Sbjct: 456 EMNNKMIGSKPLYVSLAQRRDVRRQQLESQISQRN 490
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/444 (50%), Positives = 311/444 (70%), Gaps = 13/444 (2%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
Q ++ AA+ S A+NG N+G D S SLYVG+LD SV+++ LYD+F+ +G V
Sbjct: 24 QEESSSGSAAEVSSASNG-GNSGTAVD-----SASLYVGELDPSVSEALLYDIFSPIGPV 77
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD T+ SLGY YVN+N A+++LN+TP+ GKP RIM+S RDP++RK+G
Sbjct: 78 SSIRVCRDAVTKTSLGYAYVNFNDHDSGKVAIEKLNYTPIKGKPCRIMWSQRDPSMRKNG 137
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+GNIFIKNL IDNKALHDTFS FGNILSCK+ATD G+S+G+GFV F+ + +A AID
Sbjct: 138 SGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAID 197
Query: 187 KLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGM+LN +V+V + +++RES A K F NVYVKN+ TE++ +++F +FG
Sbjct: 198 AINGMMLNGLEVYVAAHVSRKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELFKKFGP 257
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS ++ +D++GK + FGFVN+++ + AA++V+ LN +F ++ YVG+AQKKYER EL
Sbjct: 258 ITSISMEKDSEGKFRGFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQEL 317
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K ++E++ E K++G+NL+VKNLDD+I D+ LK+ F FGTITS KVMR+ G S+G
Sbjct: 318 KKQYEEAKLEKMAKYQGVNLFVKNLDDTIDDELLKKEFESFGTITSVKVMRNETGKSKGF 377
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMRPPVGPR 421
GFV FS+ EEA++A+TE N ++V KPLYVALAQRK+ RR++L Q +QMR
Sbjct: 378 GFVCFSSPEEATRAITEKNQQIVAGKPLYVALAQRKDVRRSQLAQQIQARNQMRYQQATA 437
Query: 422 MPMYPPVA-PG-LGQQLFYGQGPP 443
PG Q +FYG PP
Sbjct: 438 AAAAAAAGIPGQFMQPMFYGVMPP 461
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/456 (49%), Positives = 300/456 (65%), Gaps = 28/456 (6%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
Q PV + P PA G N + SLY+GDL V +S L++ F+ G V+S
Sbjct: 29 QPPVGMG--PPPANMGYPPNA------TYSMASLYIGDLHGDVTESMLFEKFSMAGPVLS 80
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD ++R SLGY YVN+ +A RALD +NF ++G+P+RIM+S RDP R++G G
Sbjct: 81 IRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFETIHGRPMRIMWSQRDPAARRAGNG 140
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
NIFIKNLD+ IDNK+++DTFS FGNILSCKVA D G SRGYGFV F+ EESA+ AI+K+
Sbjct: 141 NIFIKNLDRVIDNKSIYDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKV 200
Query: 189 NGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NGMLL+ K+V+VG F + +R E ++ NV+VKN E ++ L K+F ++G IT
Sbjct: 201 NGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEIT 260
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMEL 304
S VM DADGK K FGFV + DPD A ++V+ LN K + D + V +AQKK ER +L
Sbjct: 261 SAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQKKSERTADL 320
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K K+E +E +++G+NLYVKN+D+ ++D+ L+ F+ FGTITS KVM D NG S+G
Sbjct: 321 KRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGF 380
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRM-- 422
GFV F EEA+ A+TEMN KM+ SKPLYVALAQRKE+RRA+L +Q+ Q + RM
Sbjct: 381 GFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKEDRRAQLASQYMQKLATL--RMGQ 438
Query: 423 -----PMYPPVAPGLGQQLFY------GQGPPIIPP 447
P P+ P GQQ F+ QG P+ P
Sbjct: 439 QTNGVPGMAPIYP-QGQQGFFVPNPMAAQGRPVFQP 473
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/381 (54%), Positives = 271/381 (71%), Gaps = 29/381 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV F+ EE+A +IDK+NGMLLN K
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK----------------- 167
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
KN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A
Sbjct: 168 ----------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAE 217
Query: 274 RSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E +++G+NLYVKNLDDS
Sbjct: 218 QAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDS 277
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I+D++L+ F+ FGTITS KVM + +G S+G GFV FS EEA+KA+TEMNG+++V+KPL
Sbjct: 278 INDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPL 336
Query: 393 YVALAQRKEERRARLQAQFSQ 413
YVALAQRKE+R+A L +Q+ Q
Sbjct: 337 YVALAQRKEDRKAHLASQYMQ 357
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/418 (51%), Positives = 289/418 (69%), Gaps = 46/418 (11%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 60 ASASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKA 119
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 120 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 179
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 180 KVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 239
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKCFGFVNFDDPDDAAR 274
F N+YVKN+ T+++ +++F +FG +TS ++ RD D KS+ FGFVNF + + AA+
Sbjct: 240 ANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAK 299
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVKNLDD +
Sbjct: 300 AVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVD 359
Query: 335 DDKLKELFSEFGTITSCKVMRD-------------------------------------P 357
DDKL+ELF+ FG+ITS KVMRD P
Sbjct: 360 DDKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENTEDKP 419
Query: 358 N------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
G S+G GFV F+ EEASKA+T+MN +MV +KPLYVALAQRK+ R+ +L+A
Sbjct: 420 KSEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRKDVRKNQLEA 477
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 155/291 (53%), Gaps = 16/291 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 61 SASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 121 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 176
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ +VG K +R+
Sbjct: 177 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQ---- 232
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG-ISRGS 364
KFE+ K N+YVKN+ +D++ +ELF +FG +TS + RD + SRG
Sbjct: 233 SKFEEM------KANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGF 286
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
GFV F E A+KA+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 287 GFVNFINHEHAAKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAAR 337
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 165/337 (48%), Gaps = 63/337 (18%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D T S GYG+V+Y A
Sbjct: 145 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAA 203
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
++A+ +N LN K + + + +D + K+ NI++KN+ ++ + F
Sbjct: 204 SQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELF 263
Query: 149 STFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FG++ S +A D+ +SRG+GFV F N E A A+D+LNG + ++VG +K
Sbjct: 264 EKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLYVGRAQKKH 323
Query: 208 ERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
ERE A K + N+YVKNL + +D L+++F FG ITS VMRD
Sbjct: 324 EREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDDKLRELFTPFGSITSAKVMRDTP 383
Query: 256 -------------------------------------------GKSKCFGFVNFDDPDDA 272
GKSK FGFV F++P++A
Sbjct: 384 AETAEAEEKEKKDSEKNKENIKEGETAEAENTEDKPKSEKRTVGKSKGFGFVCFNNPEEA 443
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+++V +N + ++K YV AQ+K R+ +L+ +
Sbjct: 444 SKAVTDMNQRMVNNKPLYVALAQRKDVRKNQLEASIQ 480
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/397 (52%), Positives = 292/397 (73%), Gaps = 5/397 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
S SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVN++ +A R
Sbjct: 25 LASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAER 84
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN++ + G+ RIM+S RDP++RK GNIFIKNLD SID+KALHDTFS FGNILS
Sbjct: 85 ALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNILS 144
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+A D G S+GYGFV ++ E+A+SAI +NGMLLND++VFVG + ++ERES ++
Sbjct: 145 CKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGES 204
Query: 217 R--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
R F N+YVKN+ T+++L ++FG++G ITS + RD DG SK FGFVNF+ DA
Sbjct: 205 RVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQN 264
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ L+ K F ++ YV +AQKK ERE EL+ ++E++ E K++G+NLYVKNLDD +
Sbjct: 265 AVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMD 324
Query: 335 DDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DD+L++ FS +G ITS K+MRD ISRG GFV F++ E+A++A+TEMNG+++ SKP+Y
Sbjct: 325 DDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIY 384
Query: 394 VALAQRKEERRARLQAQFSQMRPPVGPRMP--MYPPV 428
VA+AQRKE RR++L+ Q +Q MP ++PP
Sbjct: 385 VAIAQRKEVRRSQLEIQMAQRNQLKQAMMPPSVFPPT 421
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/402 (55%), Positives = 284/402 (70%), Gaps = 15/402 (3%)
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+G V S+RVCRD TRRSLGY YVN++ +A RALD +NFT + G P RIM+S RDP++
Sbjct: 14 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSL 73
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESA 181
RKSG GNIF+KNLD SIDNKAL+DTFS FGNILSCKVA + + G S+GYG+V ++ E+A
Sbjct: 74 RKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAA 133
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI K+NGML+ +VFVG F ++Q+R D T N YVKN+ T+ DL K F
Sbjct: 134 TEAIAKINGMLIAGTEVFVGHFQKRQDRPDADDWT---NCYVKNIPTQWTDADLLKEFEP 190
Query: 242 FGIITSTAVMRDADG--KSKCFGFVNFDDPDDAARSVEALNGKKFD-----DKEWYVGKA 294
FG + S VM+D ++ FGFVN+++ D A ++V+ALNGK + D E YVGKA
Sbjct: 191 FGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKA 250
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
QK+ ERE EL+ KFEQ E +K++G+NLYVKNLDD +SDD+L+E F+E GTITS +VM
Sbjct: 251 QKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVM 310
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
RDPNG SRG GFV FST EEA+KA+ EMNGK++ KP+YVALAQRKE RRA+L+AQ +Q
Sbjct: 311 RDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQ 370
Query: 415 RPP--VGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYSFL 454
R VG MPM P G +FYGQ P +PPQ F+
Sbjct: 371 RAGMVVGRGMPMGQPPMYG-AAPMFYGQ-PGQLPPQARQGFM 410
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 20/290 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ LYD F+ G ++S +V + +T S GYGYV+Y A AT A+ +
Sbjct: 80 NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAK 139
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N + G + + + R N ++KN+ + L F FG +LS V
Sbjct: 140 INGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVV 199
Query: 160 ATDSLG--QSRGYGFVQFDNEESAKSAIDKLNGMLLN-----DKQVFVGPFLRKQERE-- 210
D+ +RG+GFV ++ ++A A+D LNG D +++VG ++ ERE
Sbjct: 200 MKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERE 259
Query: 211 ----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
+K + N+YVKNL + ++D+L++ F E G ITS+ VMRD +G S+
Sbjct: 260 LRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRG 319
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FGFV F P++A ++V +NGK K YV AQ+K R +L+ + Q
Sbjct: 320 FGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQ 369
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L + F + G + S RV RD S G+G+V ++ EA
Sbjct: 274 KYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRD-PNGNSRGFGFVCFSTPEEAN 332
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N ++GKP+ + + R
Sbjct: 333 KAVAEMNGKLISGKPVYVALAQR 355
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/458 (51%), Positives = 303/458 (66%), Gaps = 28/458 (6%)
Query: 8 PQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
P V A P P N ++ + SLYVGDL VN+S L++ F+ G V+
Sbjct: 8 PAVAVPGAGAPQPGQNPTGSS--------YTMASLYVGDLHPDVNESILFEKFSAAGPVL 59
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD +TR SLGY YVN+ +A RA+D +NF L+GKP+RIM+S RDP +R+SGA
Sbjct: 60 SIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGA 119
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GNIFIKNLDK IDNK+++DTFS FGNILSCKVA D G S+GYGFV F+ EE+A++AI K
Sbjct: 120 GNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQK 179
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLL K+VFVG F + +R +T ++ NVYVKN + ++ L+K+F ++G I
Sbjct: 180 VNGMLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTI 239
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREME 303
TS VM +DGKSK FGFV F +P++A +V+ALN + D + +V +AQKK ER E
Sbjct: 240 TSCDVM-TSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAE 298
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK K EQ E K++G+NLYVKNLD+S+ D+ LK+ F FG ITS KVM D NG S+G
Sbjct: 299 LKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKG 358
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----MR---- 415
GFV F EEA+ A+TEMN KMV SKPLYVALAQRKE+RRA+L +Q+ Q MR
Sbjct: 359 FGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTN 418
Query: 416 PPVGPRMPMYPPVAPG------LGQQLFYGQGPPIIPP 447
P G P P PG + QQ +G GP ++ P
Sbjct: 419 VPGGGLYPQQPQPGPGYYVANPMQQQRNFG-GPQMVRP 455
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/406 (55%), Positives = 286/406 (70%), Gaps = 10/406 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNILS
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +T
Sbjct: 149 CKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 217 --RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN E +D L+K+F ++G ITS VM ++GKSK FGFV F +P++A
Sbjct: 209 AKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVM-TSEGKSKGFGFVAFAEPEEAEA 267
Query: 275 SVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
+V+ALN + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD+S
Sbjct: 268 AVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDES 327
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D+ LK+ F FG ITS KVM D NG S+G GFV F EEA+ A++EMN KMV SKPL
Sbjct: 328 VDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPL 387
Query: 393 YVALAQRKEERRARLQAQFSQ----MRPPVG-PRMPMYPPVAPGLG 433
YVALAQRKE+RRA+L +Q+ Q MR P MY P PG G
Sbjct: 388 YVALAQRKEDRRAQLASQYMQRLASMRMHTNVPGGGMYSPAQPGPG 433
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/440 (51%), Positives = 298/440 (67%), Gaps = 26/440 (5%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A AA PA+ +AN +SLYVGDL+ V ++QL++LF+ +G V S+RVC
Sbjct: 8 APAATTQPASTPLAN------------SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVC 55
Query: 73 RDLSTRRSLGYGYVNYNAA---HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RD TRRSLGY YVNYN+A A RA++ LN+ +NGKP+RIM+S+RDP+ RKSG GN
Sbjct: 56 RDAVTRRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGN 115
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDK+ID KALHDTFS FG ILSCKVATD+ G S+GYGFV F+++ +A AI +N
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVN 175
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
+ K V+V PF ++ +R +T + NV+VKNL +D+L K+ E G ITS
Sbjct: 176 QKKIEGKIVYVAPFQKRADRPRA--RTLYTNVFVKNLPADIGDDELGKMATEHGEITSAV 233
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VM+D G SK FGF+NF D + AA+ VE LN ++ K Y G+AQKK ERE L+ K E
Sbjct: 234 VMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAE 293
Query: 310 QSLKETADKFEGLNLYVKNL-DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+S +E K++ +NLYVKNL D+ + DD L+ELF+ GTITSCKVM+D +G S+G GFV
Sbjct: 294 ESKQERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVC 353
Query: 369 FSTAEEASK-ALTEMNGKMVVSKPLYVALAQRKEERRA-RLQAQFSQMRPPVG----PRM 422
F++ +EA++ +TEMNGKMV KPLYVALAQRK+ RRA +L+A Q R +G P
Sbjct: 354 FTSHDEATRPPVTEMNGKMVKGKPLYVALAQRKDVRRATQLEANM-QARMGMGAMSRPPN 412
Query: 423 PMYPPVAPGLGQQLFYGQGP 442
PM ++P G F+ GP
Sbjct: 413 PM-AGMSPYPGAMPFFAPGP 431
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/387 (54%), Positives = 278/387 (71%), Gaps = 11/387 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G SRG+GFV F+ E+A++AI +NGMLLND++VFVG F ++ERE A
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD G S+ FGFVNF+ ++A ++V
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG++ + YVG+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI D+K
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALA
Sbjct: 310 LRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 398 QRKEERRARLQAQFSQ----MRPPVGP 420
E R+A L Q+ Q MR GP
Sbjct: 369 ---EGRKAILTNQYMQRLSTMRALGGP 392
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 114/214 (53%), Gaps = 34/214 (15%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ +L DLF+Q G+++SV+V RD+S S G+G+VN+ E
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSG-HSRGFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 244 AQKAVVNMNGREVSG---RLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-NLYVK 299
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 300 NLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V + K N Y++ LS
Sbjct: 359 GTKPLYVA--------LAEGRKAILTNQYMQRLS 384
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/389 (53%), Positives = 278/389 (71%), Gaps = 5/389 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ LYD F G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++R+SG GN+FIKNLD+SIDNKAL+DTFS+FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTR 217
D G S+G+GFV ++++ESA+ AI+K+NGML+ DK+VFV F + +R E
Sbjct: 122 VCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKH 180
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSV 276
F N++VKNL ++ D L K F +FG + S V+ D G SKC GF++F + D A +V
Sbjct: 181 FTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAV 240
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E ++ K+ + K+ Y G+AQKK ER ELK K+E+ +E +++G+NLYVKNLDDSI D+
Sbjct: 241 EIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDE 300
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E F +FG ITS KV+ D NG S+G GFV FS+ EEA+KA+TEMNG++ KPLYV L
Sbjct: 301 GLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGL 360
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPMY 425
AQRKE+R+A LQ Q+ Q R G RM +
Sbjct: 361 AQRKEDRKAHLQQQYMQ-RVSTGIRMQAF 388
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 17/196 (8%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GDA + T+L+V +L S + L F Q G+VVS +V D +T S +G++++
Sbjct: 175 GDAAKHF-TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEH 233
Query: 92 HEATRALDELNFTPLNGKPI-------------RIMYSY---RDPTIRKSGAGNIFIKNL 135
+A A++ ++ + GK + + Y + I++ N+++KNL
Sbjct: 234 DQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNL 293
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D SID++ L + F FGNI S KV TD G+S+G+GFV F + E A A+ ++NG +
Sbjct: 294 DDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGG 353
Query: 196 KQVFVGPFLRKQERES 211
K ++VG RK++R++
Sbjct: 354 KPLYVGLAQRKEDRKA 369
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/385 (54%), Positives = 277/385 (71%), Gaps = 14/385 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD +TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIF+KNLD+SID+K L+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E A+ AI+K+NGM LND++VFVG F +++R++ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KNL E ++ L+ +F FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKF----------EQSLKETADKFEGLNLYVKN 328
+NGK + K+ YVG+AQKK ER+ ELK KF EQ ++ + + +G+NLYVKN
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKN 310
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LDD I D++L++ FS FGTITS KV + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 311 LDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 369
Query: 389 SKPLYVALAQRKEERRARLQAQFSQ 413
+KPLYVALAQRKEER+A L Q+ Q
Sbjct: 370 TKPLYVALAQRKEERQAHLSNQYMQ 394
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 172/307 (56%), Gaps = 37/307 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S++ LYD F+ G ++S +V D + S GYG+V++ EA RA+++
Sbjct: 100 NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEK 157
Query: 101 LNFTPLNGKPIRI--MYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTF 151
+N LN + + + S RD R++ G N++IKNL + +D++ L D FS F
Sbjct: 158 MNGMFLNDRKVFVGRFKSRRD---RQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRF 214
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 212 ---------TADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
DK + N+YVKNL + ++ L+K F FG ITS
Sbjct: 275 ELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V + G+SK FGFV F P++A ++V +NG+ K YV AQ+K ER+ L ++
Sbjct: 335 VTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYM 393
Query: 310 QSLKETA 316
Q + T+
Sbjct: 394 QRMASTS 400
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + +S GY V F E A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K V + +R+ + K+ N++VKNL + L F FG I
Sbjct: 71 TMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ ++A R++E +NG +D++ +VG+ + + +R+ EL
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ + E N+Y+KNL + + D++L++LFS FG S KVM D +G S+G GF
Sbjct: 186 RAK----------EFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 236 VSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 37/224 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ +L ++D +L DLF++ G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPI---------------------------RIMYSYRDPTIRKSG 126
A +A+DE+N LNGK I +I +D ++R G
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQG 303
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+
Sbjct: 304 V-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVT 361
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
++NG ++ K ++V RK+ER++ +N Y++ ++ T+
Sbjct: 362 EMNGRIVATKPLYVALAQRKEERQA-----HLSNQYMQRMASTS 400
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/381 (54%), Positives = 271/381 (71%), Gaps = 29/381 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK----------------- 167
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
KN E T+D LK++F ++G ITS VM DGKS+ FGFV F+DPD A
Sbjct: 168 ----------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAE 217
Query: 274 RSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDS
Sbjct: 218 QAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDS 277
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPL
Sbjct: 278 IDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPL 336
Query: 393 YVALAQRKEERRARLQAQFSQ 413
YVALAQRKE+R+A L +Q+ Q
Sbjct: 337 YVALAQRKEDRKAHLASQYMQ 357
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 147/290 (50%), Gaps = 45/290 (15%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG M L G
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG--------------------MLLNG 166
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K KN + ++DDKLKE+F ++GTITS KVM +G SRG GF
Sbjct: 167 K-------------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 207
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 208 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/485 (46%), Positives = 300/485 (61%), Gaps = 76/485 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++FG++G ITS ++ D++ GKS+ FGFVNF + AA +
Sbjct: 234 NFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K+F ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 294 VEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 336 DKLKELFSEFGTITSC-------------------------------------------- 351
+KL++LF FG ITS
Sbjct: 354 EKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSD 413
Query: 352 --------KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
K + G S+G GFV FS +EASKA+TEMN +MV KPLYVALAQRK+ R
Sbjct: 414 KAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 404 RARLQAQF--------SQMRPPVGPRMPM------YPPVAPGL-----GQQ--LFYGQGP 442
+++L+A Q+ G P YPP G GQ+ + +GQ P
Sbjct: 474 KSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAGQRGGMAFGQQP 533
Query: 443 PIIPP 447
++ P
Sbjct: 534 GMVLP 538
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 155/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP- 357
+R+ KFE+ K N+YVKNLD +++++ +ELF ++G ITS + D
Sbjct: 223 DRQ----SKFEEM------KANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSE 272
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV F E A+ A+ E+N K + LYV AQ+K ER L+ Q R
Sbjct: 273 TGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAAR 330
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/485 (46%), Positives = 300/485 (61%), Gaps = 76/485 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++FG++G ITS ++ D++ GKS+ FGFVNF + AA +
Sbjct: 234 NFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K+F ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 294 VEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 336 DKLKELFSEFGTITSC-------------------------------------------- 351
+KL++LF FG ITS
Sbjct: 354 EKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSD 413
Query: 352 --------KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
K + G S+G GFV FS +EASKA+TEMN +MV KPLYVALAQRK+ R
Sbjct: 414 KAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 404 RARLQAQF--------SQMRPPVGPRMPM------YPPVAPGL-----GQQ--LFYGQGP 442
+++L+A Q+ G P YPP G GQ+ + +GQ P
Sbjct: 474 KSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPTNAGQRGGMAFGQQP 533
Query: 443 PIIPP 447
++ P
Sbjct: 534 GMVLP 538
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 155/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP- 357
+R+ KFE+ K N+YVKNLD +++++ +ELF ++G ITS + D
Sbjct: 223 DRQ----SKFEEM------KANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSE 272
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV F E A+ A+ E+N K + LYV AQ+K ER L+ Q R
Sbjct: 273 TGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAAR 330
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/394 (51%), Positives = 280/394 (71%), Gaps = 7/394 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL +ND QL F+++G V VCRD+++R+SLGYGYVN+ +A RAL+
Sbjct: 2 TSLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
++N+ + G+PIRIM+S RDP++RKSG GNIFIKNL K+I+ K L+DTFS FG ILSCK+
Sbjct: 62 QMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKI 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A D G S+GYGFV F+NEE AK AI K+N M + K V+VG F+ + +R+S K +FN
Sbjct: 122 AMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFN 181
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKN T ++ LK++F EFG I S VM+D++GKSK FGFV + +P+ A +V A+
Sbjct: 182 NIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAM 241
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKL 338
+GK+ + Y +AQ+K ER+ ELK + E+ E K+ +NLYVKNLDD I D++L
Sbjct: 242 HGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERL 301
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE+FS++G I+S KVM D N S+G GFV F+ E+A+KA+TE NG++ SKPLYVA+AQ
Sbjct: 302 KEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQ 361
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMP--MYP 426
RKE+RRA L A+ +Q +R P +P M+P
Sbjct: 362 RKEDRRAELAAKHTQHLNALRSTAPPMIPALMHP 395
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 36 QFVS-TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
++VS +LYV +LD ++D +L ++F++ G + S +V D S RS G+G+V + +A
Sbjct: 280 KYVSNVNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTD-SNNRSKGFGFVCFTNPEQA 338
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E N KP+ + + R
Sbjct: 339 TKAVTEANGRVEYSKPLYVAIAQR 362
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/402 (52%), Positives = 279/402 (69%), Gaps = 24/402 (5%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST------RRS------- 80
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD RRS
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPELLP 64
Query: 81 -------LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
+ + + RALD +NF + GKP+RIM+S RDP++RKSG GNIFIK
Sbjct: 65 APQPGEEVQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIK 124
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLL
Sbjct: 125 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 183
Query: 194 NDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
ND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S VM
Sbjct: 184 NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 243
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ
Sbjct: 244 TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQM 303
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+
Sbjct: 304 KQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSS 362
Query: 372 AEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 363 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 404
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/361 (56%), Positives = 273/361 (75%), Gaps = 6/361 (1%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD +NF + GKP+RIM+
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV +D G S+G+GFV F
Sbjct: 62 SQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNNVYVKNLSETTTE 232
+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ T K F NVY+KN + +
Sbjct: 121 ETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTK-EFTNVYIKNFGDRMDD 179
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
+ L +FG FG I S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K YVG
Sbjct: 180 ETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVG 239
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+AQKK +R ELK KFEQ ++ + +++G+NLYVKNLDD I D++L++ FS FGTITS K
Sbjct: 240 RAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTK 299
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412
VM + G S+G GFV FS+ EEA+KA++EMNG++V +KPLYVALAQRKEER+A L Q+
Sbjct: 300 VMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYI 358
Query: 413 Q 413
Q
Sbjct: 359 Q 359
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 114/205 (55%), Gaps = 25/205 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQ++SV+V D +S G+G+V++ +A +A+D
Sbjct: 166 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGG-KSKGFGFVSFERHEDAQKAVD 224
Query: 100 ELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNK 142
E+N LNGK I + + + D +IR G N+++KNLD ID++
Sbjct: 225 EMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGI-NLYVKNLDDGIDDE 283
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L FS FG I S KV T+ G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 284 RLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 342
Query: 203 FLRKQERESTADKTRFNNVYVKNLS 227
RK+ER++ N Y++ ++
Sbjct: 343 AQRKEERQA-----HLTNQYIQRMA 362
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 265 RYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEAT 322
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R R++ N +I+ +
Sbjct: 323 KAVSEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYIQRM 361
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/381 (54%), Positives = 270/381 (70%), Gaps = 29/381 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV F+ EE+A +ID++NGMLLN K
Sbjct: 125 ILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK----------------- 167
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
KN E T+D LK +F ++G ITS VM DGKS+ FGFV F+DPD A
Sbjct: 168 ----------KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAE 217
Query: 274 RSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
++V LNGK+ + K YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDDS
Sbjct: 218 QAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDS 277
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I D++L++ F+ FGTITS KVM + G S+G GFV FS EEA+KA+TEMNG+++V+KPL
Sbjct: 278 IDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPL 336
Query: 393 YVALAQRKEERRARLQAQFSQ 413
YVALAQRKE+R+A L +Q+ Q
Sbjct: 337 YVALAQRKEDRKAHLASQYMQ 357
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 147/290 (50%), Gaps = 45/290 (15%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V +D G SK +GFV+F+ + A +S++ +NG M L G
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG--------------------MLLNG 166
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K KN + ++DDKLK++F ++GTITS KVM +G SRG GF
Sbjct: 167 K-------------------KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGF 207
Query: 367 VAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
VAF + A +A+ E+NGK V K +YV AQ+K ER+ L+ +F Q++
Sbjct: 208 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/410 (51%), Positives = 284/410 (69%), Gaps = 11/410 (2%)
Query: 9 QAPVAVAAQPSPATN-GIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67
Q P A Q P TN G N + SLY+GDL V +S L++ F+ G V+
Sbjct: 36 QPPAAAIQQGPPQTNIGYPPNA------TYSMASLYIGDLHGDVTESMLFEKFSMAGPVL 89
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S+RVCRD ++R SLGY YVN+ +A RALD +NF ++G+P+RIM+S RDP R++G
Sbjct: 90 SIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEIIHGRPMRIMWSQRDPAARRAGN 149
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
GNIFIKNLD+ IDNK+++DTFS FGNILSCKVATD G S+GYGFV F+ E SA++AI+K
Sbjct: 150 GNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEK 209
Query: 188 LNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLL+DK+VFVG F + +R E ++ NV+VKN E E LK++F ++G I
Sbjct: 210 VNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEI 269
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE--WYVGKAQKKYEREME 303
S VM DA+GK K FGFV + DP+ A+++V+ LN + E V +AQKK ER E
Sbjct: 270 NSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQKKSERSAE 329
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK K+E +E +++G+NLYVKN+++ ++D+ L+ F++FGTITS KVM D NG S+G
Sbjct: 330 LKRKYEALKQERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKG 389
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
GFV F EEA+ A+TEMN KM+ +KPLYVALAQRKE+RRA+L +Q+ Q
Sbjct: 390 FGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 439
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 164/299 (54%), Gaps = 21/299 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ + ++++ +LD +++ +YD F+ G ++S +V D S GYG+V++
Sbjct: 144 ARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATD-DDGNSKGYGFVHFETEAS 202
Query: 94 ATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDT 147
A A++++N L+ K + + + R +++ G N+F+KN + +D L +
Sbjct: 203 AQTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDEAKLKEM 262
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS +G I S V TD+ G+ +G+GFV + + E+A A+D LN +L ++ + ++
Sbjct: 263 FSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQK 322
Query: 208 ERESTAD-KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
+ E +A+ K ++ N+YVKN+ E T++ L+ F +FG ITS VM D
Sbjct: 323 KSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVD 382
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+G+SK FGFV F+ P++A +V +N K K YV AQ+K +R +L ++ Q L
Sbjct: 383 ENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 441
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/373 (54%), Positives = 275/373 (73%), Gaps = 8/373 (2%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD +NF + G+PIRIM+
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV D G SRG+GFV F
Sbjct: 62 SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ ++A+ AI +NGMLLND++VFVG F ++ERE+ A F N+YVKNL E
Sbjct: 121 ETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVMEFTNIYVKNLQVDVDER 180
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
L+ +F +FG + S VMRD+ G S+ FGFVNF+ ++A ++V +NGK+ + YVG+
Sbjct: 181 GLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGR 240
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQK+ ER+ ELK +FEQ ++ ++++G+NLYVKNLDDSI+D+KL++ FS +G ITS KV
Sbjct: 241 AQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKV 300
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
M + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 301 MTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 359
Query: 414 ----MRPPVGPRM 422
+R GP M
Sbjct: 360 RLSTVRALGGPLM 372
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 31/214 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S+ S G+G+VN+ E
Sbjct: 160 ARVMEFTNIYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRD-SSGHSRGFGFVNFEKHEE 218
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR--------------------DPTIRKSGAGNIFIK 133
A +A+ +N ++G R++Y R D R G N+++K
Sbjct: 219 AQKAVVHMNGKEVSG---RLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGV-NLYVK 274
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD SI+++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 275 NLDDSINDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIV 333
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ LS
Sbjct: 334 GTKPLYVALAQRKEER-----KAILTNQYMQRLS 362
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/399 (55%), Positives = 292/399 (73%), Gaps = 7/399 (1%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 82
N ++ G G STSLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 23 NAPSSTGSEGQQSDSNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLG 82
Query: 83 YGYVNYNAAHEATR-ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
Y YVN+ A HEA + A++ LN+TP+ G+ RIM+S RDP +RK G GNIFIKNL+ IDN
Sbjct: 83 YAYVNF-ADHEAGKVAIERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDN 141
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
KAL+DTFS FGNILS K+ATD G S+G+GFV F+ E +AK AID LNGMLLN ++++V
Sbjct: 142 KALYDTFSVFGNILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVA 201
Query: 202 PFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
P L ++ER+S +KTR F NVYVKN+ TTE++ K++F + G +S + + DGK K
Sbjct: 202 PHLSRKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLK 261
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF 319
FGFVN+++ +DA ++VE LN +F +E YVG+AQKKYER LK ++E + E K+
Sbjct: 262 GFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKY 321
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
+G+NL++KNLDDSI D+KLKE F+ FGTITS KVMR NG S+G GFV FS+ EEA+KA+
Sbjct: 322 QGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAI 381
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
TE N ++V KPLYVA+AQRKE RR++L Q SQMR
Sbjct: 382 TEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQARSQMR 420
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/350 (57%), Positives = 266/350 (76%), Gaps = 4/350 (1%)
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V+S+RVCRD+ TRRSL Y YVN+ +A RALD +NF + GKPIRIM+S RDP++RKS
Sbjct: 24 VLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 83
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GN+FIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F+ +++A AI
Sbjct: 84 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAI 142
Query: 186 DKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN + ++ LK++FG++G
Sbjct: 143 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYG 202
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
S VM D GKSK FGFV+F+ ++A ++VE +NGK + K +VG+AQKK ER+ E
Sbjct: 203 KTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 262
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
LK +FEQ +E +++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + G S+G
Sbjct: 263 LKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKG 321
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQRKEER+A L Q+ Q
Sbjct: 322 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 371
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 165/291 (56%), Gaps = 23/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 87 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 144
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + F +G
Sbjct: 145 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKT 204
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 205 LSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAEL- 263
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK F
Sbjct: 264 KRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGF 322
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 323 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 373
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G+ +SV+V D T +S G+G+V++ E
Sbjct: 174 AKEF--TNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEE 230
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N +NGK + R + I + N++IKNLD
Sbjct: 231 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 290
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 291 TIDDEKLRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 349
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 350 LYVALAQRKEER-----KAHLTNQYMQRIA 374
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/408 (51%), Positives = 283/408 (69%), Gaps = 11/408 (2%)
Query: 11 PVAVAAQPSPATN-GIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
P AV Q P TN G N + SLY+GDL V+++ L++ F+ G V+S+
Sbjct: 33 PQAVIQQGPPPTNIGYPPNA------TYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSI 86
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD ++R SLGY YVN+ +A RALD +NF ++G+P+RIM+S RDP R++G GN
Sbjct: 87 RVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGN 146
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLD+ IDNK+++DTFS FGNILSCKVATD G S+GYGFV F+ E SA++AI+K+N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 190 GMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLL+DK+V+VG F + +R E ++ NV+VKN E ++ L +F +FG ITS
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELK 305
VM DA GK K FGFV F D D A ++VE LN + D + V +AQKK ER ELK
Sbjct: 267 AVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELK 326
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
K+E +E +++G+NLYVKN+++ ++DD L++ FS FGTITS KVM D NG S+G G
Sbjct: 327 RKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFG 386
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
FV F EEA+ A+T+MN KM+ +KPLYVALAQRKE+RRA+L +Q+ Q
Sbjct: 387 FVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 434
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 277/370 (74%), Gaps = 5/370 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYV DL V + L+ F+ G V+SVRVCRD+ TRRSLGY YVN++ +A RALD
Sbjct: 11 SLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDT 70
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRI + RDP++RKSG GN+FIK LDKSIDNKAL+DTFS FGNI SCK+
Sbjct: 71 MNFDIIKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSCKIV 130
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
D G SRGYGFV F+ +E+A+ AI+K+NGMLLN K+VFVG F+ ++ER D +F
Sbjct: 131 CDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLDLGMRKF 189
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM-RDADGKSKCFGFVNFDDPDDAARSVE 277
NNVYVKNLSE T ++ L++IF +G I S VM D+ KSK FGFV+F++P+ A ++VE
Sbjct: 190 NNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVE 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
ALNG K YVG+AQ K ER+ ELK KFE+ KE ++++G+NL+VKNLDD+I D +
Sbjct: 250 ALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNLDDNIDDKR 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ F++FGTITS KVM + NG S+G GFV FS+ EEA+KA+ EMN K++ ++PLYVALA
Sbjct: 310 LRKEFAQFGTITSAKVMTE-NGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYVALA 368
Query: 398 QRKEERRARL 407
QRKE+R+A L
Sbjct: 369 QRKEDRKAYL 378
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 159/293 (54%), Gaps = 19/293 (6%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSA 184
++++++L + L FST G +LS +V D + + S GY +V F A+ A
Sbjct: 8 AVASLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERA 67
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+D +N ++ + + + + +R+ + K+ NV++K L ++ L F FG
Sbjct: 68 LDTMNFDIIKGRPIRITWY----QRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGN 123
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAAR-SVEALNGKKFDDKEWYVGKAQKKYEREME 303
I+S ++ D G S+ +GFV+F+ D+AAR ++E +NG + K+ +VG+ + ER +E
Sbjct: 124 ISSCKIVCDEHG-SRGYGFVHFE-TDEAARIAIEKVNGMLLNGKKVFVGRFMSRRER-LE 180
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG-ISR 362
+ L KF N+YVKNL + D+KL+E+F +G I S KVM D + S+
Sbjct: 181 V-------LDLGMRKFN--NVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSK 231
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
GFV+F E A KA+ +NG K LYV AQ K ER+A L+ +F ++R
Sbjct: 232 QFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIR 284
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD +++D +L F Q G + S +V + RS G+G+V +++ EAT
Sbjct: 290 RYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVMTE--NGRSKGFGFVYFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + +P+ + + R
Sbjct: 348 KAIVEMNEKIIEARPLYVALAQR 370
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/389 (53%), Positives = 278/389 (71%), Gaps = 5/389 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ LYD F G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++R+SG GN+FIKNLD+SIDNKAL+DTFS+FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTR 217
D G S+G+GFV ++++ESA+ AI+K+NGML+ DK+VFV F + +R E
Sbjct: 122 VCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKH 180
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSV 276
F N++VKNL ++ D L + F +FG + S V+ D G SKC GF++F + D A +V
Sbjct: 181 FTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAV 240
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E ++ K+ + K+ Y G+AQKK ER ELK K+E+ +E +++G+NLYVKNLDDSI D+
Sbjct: 241 EIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDE 300
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E F +FG ITS KV+ D NG S+G GFV FS+ EEA+KA+TEMNG++ KPLYV L
Sbjct: 301 GLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGL 360
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPMY 425
AQRKE+R+A LQ Q+ Q R G RM +
Sbjct: 361 AQRKEDRKAHLQQQYMQ-RVSTGIRMQAF 388
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GDA + T+L+V +L S + L + F Q G+VVS +V D +T S +G++++
Sbjct: 175 GDAAKHF-TNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEH 233
Query: 92 HEATRALDELNFTPLNGKPI-------------RIMYSY---RDPTIRKSGAGNIFIKNL 135
+A A++ ++ + GK + + Y + I++ N+++KNL
Sbjct: 234 DQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNL 293
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D SID++ L + F FGNI S KV TD G+S+G+GFV F + E A A+ ++NG +
Sbjct: 294 DDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGG 353
Query: 196 KQVFVGPFLRKQERES 211
K ++VG RK++R++
Sbjct: 354 KPLYVGLAQRKEDRKA 369
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/392 (53%), Positives = 288/392 (73%), Gaps = 9/392 (2%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GGV + S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD +++SLGY YVNY
Sbjct: 54 GGVAEN----SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNY 109
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ + +A+DELN++ + +P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTF
Sbjct: 110 HKFEDGEKAIDELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTF 169
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FG ILSCKVATD LGQS+ +GFV ++ E+A++AI+ +NGMLLND++V+VG + K++
Sbjct: 170 SAFGRILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKD 229
Query: 209 RESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
RES + K + N+YVKN+ +E + + +F +G ITS + +D DGKSK FGFVN+
Sbjct: 230 RESKFEEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNY 289
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ A +VEALN K+ + ++ YVG+AQKK ER ELK ++E E K++G+NL+V
Sbjct: 290 EEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFV 349
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDD I +KL+E F FGTITS KVM D G SRG GFV FST EEA+KA+TEMN +M
Sbjct: 350 KNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRM 409
Query: 387 VVSKPLYVALAQRKEERRARLQAQF---SQMR 415
V KPLYVALAQRK+ RR++L+ Q +QMR
Sbjct: 410 VNGKPLYVALAQRKDVRRSQLEQQIQARNQMR 441
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/485 (46%), Positives = 300/485 (61%), Gaps = 76/485 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL + ++ +++F ++G ITS ++ RD + GKS+ FGFVNF + AA +
Sbjct: 234 NFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 294 VEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 336 DKLKELFSEFGTITSCKVMRDPNG------------------------------------ 359
+KL++LF FG ITS +VMRD G
Sbjct: 354 EKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSD 413
Query: 360 --------------ISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ + GF V FS +EASKA+TEMN +MV KPLYVALAQRK+ R
Sbjct: 414 KVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 404 RARLQAQF--------SQMRPPVGPRMP-MYPPVAPGLGQQLF------------YGQGP 442
+++L+A Q+ G P M P V GQQ F +GQ P
Sbjct: 474 KSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAAQRGGMAFGQQP 533
Query: 443 PIIPP 447
++ P
Sbjct: 534 GMVIP 538
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNLD +S+++ +ELF ++G ITS + RD
Sbjct: 223 DRQS----KFEEM------KANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGE 272
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV F E A+ A+ E+N K + LYV AQ+K ER L+ Q R
Sbjct: 273 TGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 330
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/384 (54%), Positives = 276/384 (71%), Gaps = 7/384 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A
Sbjct: 8 FPLASLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAEL 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + G+PIRIM+S RDP +RKSG GNIFIKNL++SIDNKAL+DTFSTFGNILS
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKV D G SRG+GFV F+ E+A+ AI +NGMLLN+++VFV F +QERE+
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAELGVR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVYVKNL E L+++F +FG S VMRD G S+ FGFVNF+ ++A +
Sbjct: 187 AMEFTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK---FEGLNLYVKNLDD 331
+V +NGK+ + YVG+AQK ER+ ELK KF+Q + D+ ++G+NLYVKNLDD
Sbjct: 247 AVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDD 306
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
SI +++L++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG ++ +KP
Sbjct: 307 SIDNERLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKP 365
Query: 392 LYVALAQRKEERRARLQAQFSQMR 415
LYVALAQRK+ER+A L QF Q R
Sbjct: 366 LYVALAQRKDERKAILTNQFMQQR 389
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/460 (46%), Positives = 293/460 (63%), Gaps = 62/460 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ A A P+P + A+N S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVAAAQAEAPTPTSAAPAHNQN--------SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ ++++ +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + A+ +V+ALN F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KVMRD
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAE 371
Query: 362 RGS--------------------------------------------------GF--VAF 369
R GF V F
Sbjct: 372 RSETPGDEKKEESKEEAEKTEESKEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCF 431
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S +EA+KA+TEMN KM+ KPLYVALAQRK+ R+ +L+A
Sbjct: 432 SNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEA 471
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 152/290 (52%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ K + +R+ KT NV++KNL L F FG I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D +SD++ +ELF + G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFG 272
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 69/245 (28%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL V+D + +LF + G + S + RD +S G+G+VNY A+ A+D
Sbjct: 229 TNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKHEAASAAVD 287
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN T G+ + + + R+ +RK N++IKNL+ +D++
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEK 347
Query: 144 LHDTFSTFGNILSCKVATDS---------------------------------------- 163
L D F+ FG I S KV D+
Sbjct: 348 LRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESKEGADDKKDENKP 407
Query: 164 ------------LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
LG+S+G+GFV F N + A A+ ++N ++ K ++V RK R++
Sbjct: 408 GEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKN 467
Query: 212 TADKT 216
+ T
Sbjct: 468 QLEAT 472
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/460 (46%), Positives = 293/460 (63%), Gaps = 62/460 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ A A P+P + A+N S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVAAAQAEAPTPTSAAPAHNQN--------SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ ++++ +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + A+ +V+ALN F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KVMRD
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAE 371
Query: 362 RGS--------------------------------------------------GF--VAF 369
R GF V F
Sbjct: 372 RSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCF 431
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S +EA+KA+TEMN KM+ KPLYVALAQRK+ R+ +L+A
Sbjct: 432 SNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEA 471
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 152/290 (52%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ K + +R+ KT NV++KNL L F FG I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D +SD++ +ELF + G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFG 272
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 162/347 (46%), Gaps = 75/347 (21%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 131 RKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAA 189
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIR--------KSGAGNIFIKNLDKSIDNKALHD 146
A+ +N LN K ++ + P K+ NI++KN+D + ++ +
Sbjct: 190 NNAIKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRE 247
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
F G+I S +A D G+SRG+GFV + E+A +A+D LN ++++VG +K
Sbjct: 248 LFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKK 307
Query: 207 QERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD- 253
ERE K +++ N+Y+KNL++ ++ L+ +F FG ITS VMRD
Sbjct: 308 HEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDA 367
Query: 254 ------------------------------AD---------------------GKSKCFG 262
AD GKSK FG
Sbjct: 368 MPAERSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFG 427
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
FV F +PD+A ++V +N K + K YV AQ+K R+ +L+ +
Sbjct: 428 FVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 474
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/501 (44%), Positives = 308/501 (61%), Gaps = 68/501 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A P+P T A Q S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVPAASGDAPTPTT-------AAQQAHQN-SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ T++D +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + AA +V+ LN +F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM------- 354
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KV+
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKK 371
Query: 355 ---------------------------RDPNGISRGSG-------------------FVA 368
+ NG +G FV
Sbjct: 372 DEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVC 431
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPV 428
FS +EA+KA+TEMN KM+ KPLYVALAQRK+ R+ +L+A Q R + RM
Sbjct: 432 FSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATI-QARNQL--RMQQQQQQ 488
Query: 429 APGLGQQLFY--GQGPPIIPP 447
G Q+F GQ P + PP
Sbjct: 489 QFGGIPQMFIAPGQQPMMYPP 509
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/414 (51%), Positives = 297/414 (71%), Gaps = 14/414 (3%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN++ + +RA++EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ ++G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D LGQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K F
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL+ ++IF FG +TS + D +GKS+ FGFVNF++ + A +V+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+ D ++ YVG+AQKK ER ELK +E + E K++G+NL+VKNLDDSI +KL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 400 KEERRARLQAQF---SQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPP 447
K+ RR++L+ Q +QM RM A GQ +FYGQ P PP
Sbjct: 420 KDVRRSQLEQQIQARNQM------RMQNAAAAAGMPGQFMSPMFYGQQPGFFPP 467
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/445 (47%), Positives = 307/445 (68%), Gaps = 12/445 (2%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
APVA + +G S SLYVG+L+ SVN++ L+++F+ +GQV S+
Sbjct: 21 APVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD T++SLGY YVN++ + +A+++LN++ + G+P RIM+S RDP++R++G GN
Sbjct: 81 RVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNL +IDNKALHDTF+ FG ILSCKVATD +G S+ +GFV ++ E+A++AI+ +N
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLND++V+VG + K++RES + K F NVY KN+ +E++ KK+F +G ITS
Sbjct: 201 GMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ +D +GKSK FGFVNF++ + A ++V+ LN K+ + ++ YVG+AQKK ER ELK +
Sbjct: 261 IYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+E + E K++G+NL++KNLDD+I +KL+E F FG+ITS +VM D G S+G GFV
Sbjct: 321 YENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFV 380
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPP 427
FS+ EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q +M M
Sbjct: 381 CFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARN-----QMRMQNA 435
Query: 428 VAPG--LGQ---QLFYGQGPPIIPP 447
A G GQ +FYGQ P PP
Sbjct: 436 AATGGIPGQFIPPMFYGQQPGFFPP 460
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/465 (47%), Positives = 294/465 (63%), Gaps = 66/465 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 53 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 113 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 172
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 173 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 232
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++F ++G ITS ++ RD + GKS+ FGFVNF + D AA +
Sbjct: 233 NFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAA 292
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 293 VEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 352
Query: 336 DKLKELFSEFGTITSCKVMRDPNG------------------------------------ 359
+KL++LF FG ITS +VMRD G
Sbjct: 353 EKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEK 412
Query: 360 ----------------ISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ + GF V FS +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 413 TDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 402 ERRARLQAQF--------SQMRPPVGPRMP-MYPPVAPGLGQQLF 437
R+++L+A Q+ G P M P V GQQ F
Sbjct: 473 VRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGF 517
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
PT + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNL+ +++++ +ELF ++G ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNE 271
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV F + A+ A+ ++N K + LYV AQ+K ER L+ Q R
Sbjct: 272 TGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 329
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/465 (47%), Positives = 294/465 (63%), Gaps = 66/465 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 53 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 113 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 172
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 173 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 232
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL T ++ +++F ++G ITS ++ RD + GKS+ FGFVNF + D AA +
Sbjct: 233 NFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAA 292
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 293 VEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 352
Query: 336 DKLKELFSEFGTITSCKVMRDPNG------------------------------------ 359
+KL++LF FG ITS +VMRD G
Sbjct: 353 EKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDSAEK 412
Query: 360 ----------------ISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ + GF V FS +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 413 TDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 402 ERRARLQAQF--------SQMRPPVGPRMP-MYPPVAPGLGQQLF 437
R+++L+A Q+ G P M P V GQQ F
Sbjct: 473 VRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGF 517
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
PT + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNL+ +++++ +ELF ++G ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNE 271
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV F + A+ A+ ++N K + LYV AQ+K ER L+ Q R
Sbjct: 272 TGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 329
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/414 (51%), Positives = 297/414 (71%), Gaps = 14/414 (3%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN++ + +RA++EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ ++G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D LGQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K F
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL+ ++IF FG +TS + D +GKS+ FGFVNF++ + A +V+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+ D ++ YVG+AQKK ER ELK +E + E K++G+NL+VKNLDDSI +KL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLE 359
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 400 KEERRARLQAQF---SQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPP 447
K+ RR++L+ Q +QM RM A GQ +FYGQ P PP
Sbjct: 420 KDVRRSQLEQQIQARNQM------RMQNAAAAAGMPGQFMLPMFYGQQPGFFPP 467
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 280/415 (67%), Gaps = 15/415 (3%)
Query: 3 QVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
Q V Q P A P A N + SLY+GDL V +S L++ F+
Sbjct: 29 QPTVMQQGPPANMGYPPNAPNAT-----------YSMASLYIGDLHPDVTESMLFEKFSM 77
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
G V+S+RVCRD ++R SLGY YVN+ +A RALD +NF ++G+P+RIM+S RDP
Sbjct: 78 AGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAA 137
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
R++G GNIFIKNLD+ IDNK+++DTFS FGNILSCKVATD G S+GYGFV F+ E SA
Sbjct: 138 RRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFETEASAL 197
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
+AI+K+NGMLL+DK+VFVG F + +R E ++ NV++KN + E L ++F
Sbjct: 198 TAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLTEMFS 257
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKY 298
++G ITS VM D GK K FGFV F DPD A ++V+ LN + D + V +AQKK
Sbjct: 258 KYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQKKS 317
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ER ELK K+E +E +++G+NLYVKN+++ ++DD L+E F+ FG+ITS KVM D N
Sbjct: 318 ERTAELKRKYEALKQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVDEN 377
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
G S+G GFV F EEA+ A+TEMN KM+ +KPLYVALAQRKE+RRA+L +Q+ Q
Sbjct: 378 GRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 432
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/417 (50%), Positives = 298/417 (71%), Gaps = 7/417 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN+ + +A
Sbjct: 49 TSASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQA 108
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++LN++ + G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSC
Sbjct: 109 IEDLNYSLIEGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGRILSC 168
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD LG S+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K
Sbjct: 169 KVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMK 228
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NV+VKNL+ T+ +LK++F +G ITS+ + +D +GKSK FGFVNFD+ +DA ++
Sbjct: 229 ANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKA 288
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + YVG+AQKK ER EL+ ++E + E K++G+NL++KNLDD+I
Sbjct: 289 VDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDS 348
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KL+ F FG ITS +VM D G S+G GFV FS+ EEA+KA+TEMN +MV KPLYVA
Sbjct: 349 EKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVA 408
Query: 396 LAQRKEERRARLQAQF---SQMR-PPVGPRMPMYPPVAPG-LGQQLFYGQGPPIIPP 447
LAQRK+ RR++L+ Q +QMR PG +FYGQ P PP
Sbjct: 409 LAQRKDVRRSQLEQQIQARNQMRMQNAAAAAAAAGGAIPGQFMNPMFYGQQPGFFPP 465
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/467 (46%), Positives = 310/467 (66%), Gaps = 45/467 (9%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
+APVAV P+ + ++N F + SLYVGDL VN+S L+++F+ +G V S
Sbjct: 20 EAPVAV-----PSASTASDN-------PFQTPSLYVGDLAPDVNESLLFEIFSAVGPVAS 67
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD TRRSLGY YVN++ +A RA+D +NF+ + GKP RIM+S RDP++R+SG G
Sbjct: 68 IRVCRDAVTRRSLGYSYVNFHQMADAERAMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVG 127
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
NIF+KNL+++IDNK L+DTFS FGNILSCKV TD G S GYG+V ++ E+A +AI+K
Sbjct: 128 NIFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEK 187
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
L+GML++ ++V VG F+R+ +R D + N Y+KN+ + L + F +FG + S
Sbjct: 188 LDGMLIDGQEVQVGHFMRRNDR---PDIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLS 244
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--------DKEWYVGKAQKKYE 299
V R+ ++ FGF+NF + + A +VEALNGK++ ++ YVG+AQKK E
Sbjct: 245 ATVSREDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSE 304
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-N 358
RE EL+ KFE + KF+G+NLYVKNLDDS++DD L++ F+ GTITS +VM+D +
Sbjct: 305 RERELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKD 364
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----- 413
G SRG GFV +ST EE+++A+ EMNGK++ +KP++VALAQR+E RRA+L+AQ +
Sbjct: 365 GRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPIFVALAQRREVRRAQLEAQHANRAGGP 424
Query: 414 -----MRPPVG-----PRMPMY---PPVAPGLGQQLFYGQGPPIIPP 447
MR P+G P MPMY P PG G Q Y P ++ P
Sbjct: 425 GQPGMMRAPMGAPMGYPGMPMYMQRP--GPGGGMQPAYPMMPQMMGP 469
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/416 (52%), Positives = 288/416 (69%), Gaps = 10/416 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S+YVG+L+ SV + QL DLF+Q VVSVR+C D T RSLGY YVN+++ +A AL
Sbjct: 30 SVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVAL 89
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ NFT +NGK IR+M+S RDPT+R+SGA N+FIKNL+ +I K+LH FS FG ILSCK
Sbjct: 90 EYFNFTVVNGKSIRVMFSNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGIILSCK 149
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND--KQVFVGPFLRKQERESTADKT 216
VATD G+S+GYGFVQF +EESAK A++ LNG L N KQ++V F+R++ER+ +
Sbjct: 150 VATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQHIGGAS 209
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F NVY KNL + T+DDL ++F FG ITS VM+D DG+SKCFGFVN++ + A +V
Sbjct: 210 KFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAV 269
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK D YVG+A++K ER+ ELK KF++ + K +G NLY+KNLD SI D+
Sbjct: 270 EKLNGKIISDVALYVGRAKRKQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDCSIDDE 329
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG-KMVVSKPLYVA 395
L+ LF F I +CKVM D G S+G GFV F+T E A+KA++ N K+V +K LYV
Sbjct: 330 YLRNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLLYVC 389
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYPP-VAPGLGQQLFYGQGPP--IIPPQ 448
+AQRKEER A L AQF++ R VG R P P +AP + ++G G P ++ PQ
Sbjct: 390 VAQRKEERSAILAAQFAR-RHMVGARTPAMPQNIAP---RPFYFGYGVPGVLVRPQ 441
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ +LY+ +LD S++D L +LF + + + +V D S RS G+G+V + A
Sbjct: 310 RKSKGCNLYLKNLDCSIDDEYLRNLFGRFDDIGTCKVMVD-SEGRSKGFGFVLFTTIEAA 368
Query: 95 TRALDELNFTPLNG 108
+A+ N L G
Sbjct: 369 NKAVSXRNERKLVG 382
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 223/443 (50%), Positives = 289/443 (65%), Gaps = 38/443 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-----LSTRRSLGYGYVNYNA----- 90
SLYVGDL V ++ LY+ F+ G ++S+RVCRD L TRRSLGY Y+N+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQPADGE 71
Query: 91 --AHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
A A RALD +NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTF
Sbjct: 72 EQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 131
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
STFGNILSCKV D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++E
Sbjct: 132 STFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 190
Query: 209 REST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
RE+ A F N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF
Sbjct: 191 REAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNF 250
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
+ ++A ++V +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYV
Sbjct: 251 EKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYV 310
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVM---------RDPNGISRGSGFVAFSTAEEASK 377
KNLDDSI DDKL++ FS +G ITS K + DP G S ++ EEA+K
Sbjct: 311 KNLDDSIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALS-GLKEEATK 369
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----MR----PPVG----PRMPMY 425
A+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q MR P +G P
Sbjct: 370 AVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFL 429
Query: 426 PPVAPGLGQQLFYGQGPPIIPPQ 448
P V Q +YG G P+ P Q
Sbjct: 430 PAVPQPPAQAAYYGCG-PVTPTQ 451
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 38/226 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 197 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 255
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 256 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 312
Query: 135 LDKSIDNKALHDTFSTFGNILSCK---------VATDSLGQSRGYGFVQFDNEESAKSAI 185
LD SID+ L FS +G I S K + D +G + EE+ K A+
Sbjct: 313 LDDSIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALSGLKEEATK-AV 371
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
++NG ++ K ++V RK+ER K N Y++ LS T
Sbjct: 372 TEMNGRIVGTKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 412
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/487 (45%), Positives = 299/487 (61%), Gaps = 76/487 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKNL + ++ +++F ++G ITS ++ RD + GKS+ FGF F + AA +
Sbjct: 234 NFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL D I D
Sbjct: 294 VEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 336 DKLKELFSEFGTITSCKVMRDPNG------------------------------------ 359
+KL++LF FG ITS +VMRD G
Sbjct: 354 EKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSD 413
Query: 360 --------------ISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ + GF V FS +EASKA+TEMN +MV KPLYVALAQRK+ R
Sbjct: 414 KVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 404 RARLQAQF--------SQMRPPVGPRMP-MYPPVAPGLGQQLF------------YGQGP 442
+++L+A Q+ G P M P V GQQ F +GQ P
Sbjct: 474 KSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAAQRGGMAFGQQP 533
Query: 443 PIIPPQV 449
++ P +
Sbjct: 534 GMVIPGI 540
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 155/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 107 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNLD +S+++ +ELF ++G ITS + RD
Sbjct: 223 DRQ----SKFEEM------KANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGE 272
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GF F E A+ A+ E+N K + LYV AQ+K ER L+ Q R
Sbjct: 273 TGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 330
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/394 (51%), Positives = 272/394 (69%), Gaps = 4/394 (1%)
Query: 20 PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
P T G++ + SLYVGDL V +S LY+ F+ G ++S+RVCRD T+
Sbjct: 25 PGTIGLSGGSHGHSTPNSPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQH 84
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVN+ A L +N + G PIRIM+S RDP RK G GN+F+KNL+KSI
Sbjct: 85 SLGYAYVNFQHRAHAEWVLATMNLDVIKGNPIRIMWSQRDPGQRKRGVGNVFVKNLEKSI 144
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DNKAL+DTFSTFG ILSCKV +D G S+GYGFV F+ +ESA AI+K+NGMLLN+ +VF
Sbjct: 145 DNKALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVF 203
Query: 200 VGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
VG F ++ERES + N+Y+KN E + L +IF ++G S VM D G+
Sbjct: 204 VGRFKSRRERESELGVKAKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGR 263
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD 317
SK FGFV+F +DA +V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ +
Sbjct: 264 SKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHI 323
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
+++G+NLY+KNLDD+I+D+ L++ FS FGTITS KVM + NG S+G GFV FS++++A+K
Sbjct: 324 RYQGVNLYIKNLDDTINDEHLRKEFSPFGTITSAKVMME-NGRSKGFGFVCFSSSKDAAK 382
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
A EMNGK+V SKPLYV+LAQRKEERR L+ Q+
Sbjct: 383 ASREMNGKLVASKPLYVSLAQRKEERRMHLKNQY 416
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 160/292 (54%), Gaps = 16/292 (5%)
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKS 183
S ++++ +L + L++ FS G ILS +V DS+ Q S GY +V F + A+
Sbjct: 42 SPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEW 101
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+ +N ++ + + +R+ K NV+VKNL ++ L F FG
Sbjct: 102 VLATMNLDVIKGNPIRI----MWSQRDPGQRKRGVGNVFVKNLEKSIDNKALYDTFSTFG 157
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S V+ D +G SK +GFV+F+ + A +++E +NG ++ + +VG+ + + ERE E
Sbjct: 158 RILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERESE 216
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
L K + + N+Y+KN +++ D +L E+F+++G S KVM D G S+G
Sbjct: 217 LGVKAK----------DYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKG 266
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
GFV+F + E+A A+ +MNGK + K +YV AQ+K ER+ L+ F Q++
Sbjct: 267 FGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIK 318
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/427 (49%), Positives = 287/427 (67%), Gaps = 41/427 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY------------ 88
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 89 -------------------NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
N A RALD +NF + GKP+RIM+S RDP++RKSG GN
Sbjct: 87 MNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 146
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+N
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 205
Query: 190 GMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S
Sbjct: 206 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 265
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK K
Sbjct: 266 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 325
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
FEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV
Sbjct: 326 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFV 384
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----MRPPVGPRMP 423
FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q +R P +
Sbjct: 385 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVIN 444
Query: 424 MYPPVAP 430
Y P P
Sbjct: 445 PYQPAPP 451
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 210/342 (61%), Gaps = 39/342 (11%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ----------------------- 197
D G S+GYGFV F+ +E+A+ AI+K+NGMLLN
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMN 119
Query: 198 --VFVGPFLR--KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
V G +R +R+ + K+ N+++KNL ++ L F FG I S V+ D
Sbjct: 120 FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 179
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+G SK +GFV+F+ + A R++E +NG +D++ +VG+ + + ERE EL + +
Sbjct: 180 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK---- 234
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
E N+Y+KN + + D++LK+LF +FG S KVM D +G S+G GFV+F E
Sbjct: 235 ------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 288
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+A KA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 289 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 330
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 233 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 289
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 290 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 348
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 349 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 407
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 408 PLYVALAQRKEERQA-----HLTNQYMQRMA 433
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/341 (58%), Positives = 257/341 (75%), Gaps = 4/341 (1%)
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+ TRRSLGY YVN+ +A RALD +NF + GKP+RIM+S RDP +RKSG GNIFIKN
Sbjct: 1 MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPPLRKSGVGNIFIKN 60
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLN
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 119
Query: 195 DKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++V VG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S VM
Sbjct: 120 DRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 179
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 239
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+
Sbjct: 240 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 298
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EEA+KA+T MNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 299 EEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 339
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 112
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 113 MNGMLLNDRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 172
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 173 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 232
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 233 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 291
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 292 FVCFSSPEEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 341
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 115/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 142 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 198
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 199 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 257
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ +NG ++ K
Sbjct: 258 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTGMNGRIVATK 316
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 317 PLYVALAQRKEERQA-----HLTNQYMQRMA 342
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/365 (52%), Positives = 267/365 (73%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+L V+D QL D F++ + SVRVCRD ST RSL YGYVN+ + +A RA+
Sbjct: 12 TASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAI 71
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ N TPLNGK +R+M+S+RDP R++G GN+++KNL +SIDN L + F FG +LSCK
Sbjct: 72 ETKNHTPLNGKLMRVMWSHRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCK 131
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VAT G+S+G+GFVQF++E+SA SAI+KLNG ++ DKQ++VG F++K +R + ++
Sbjct: 132 VATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKY 191
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL TE+ L++ F EFG I S A+ RD G S+ FGFVNF++PDDA ++E
Sbjct: 192 TNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMER 251
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NG + K YVG+AQK+ ERE L+ +FE+ KE KF+G N+YVKN+DD ++D++L
Sbjct: 252 MNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEEL 311
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+E FS+ GTITS K+M+D G S+G GFV FS++EEASKA+ +G M KPLYVA+AQ
Sbjct: 312 REHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQ 371
Query: 399 RKEER 403
RKEER
Sbjct: 372 RKEER 376
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 161/284 (56%), Gaps = 17/284 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ ++YV +L S+++ L +LF + G V+S +V +S G+G+V + +
Sbjct: 94 DARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVA-TFEDGKSKGHGFVQFESED 152
Query: 93 EATRALDELNFTPLNGKPIRI--MYSYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTF 148
A A+++LN + + K I + D + A N+++KNLD I + L + F
Sbjct: 153 SANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEELLQEKF 212
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FG I+S +A D G SRG+GFV F+N + A+ A++++NG L K ++VG ++ E
Sbjct: 213 SEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKRAE 272
Query: 209 RESTADK----------TRF--NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE + T+F +NVYVKN+ + T+++L++ F + G ITS +M+D G
Sbjct: 273 REQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLMKDDKG 332
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+SK FGFV F ++A+++V +G F K YV AQ+K ER
Sbjct: 333 RSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQRKEER 376
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDP 269
ST T ++YV L ++ L F EF + S V RD+ G+S C+G+VNF P
Sbjct: 5 STISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISP 64
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+DA R++E N + K V + + + G N+YVKNL
Sbjct: 65 EDAIRAIETKNHTPLNGKLMRVMWSHRDPDARRNGIG----------------NVYVKNL 108
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
+SI + L+ELF EFGT+ SCKV +G S+G GFV F + + A+ A+ ++NG +V
Sbjct: 109 SESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGD 168
Query: 390 KPLYVALAQRKEER 403
K +YV +K +R
Sbjct: 169 KQIYVGKFVKKSDR 182
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/396 (53%), Positives = 279/396 (70%), Gaps = 17/396 (4%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G F S SLYVGDL ++ L+++FN +G V S+RVCRD TRRSLGY YVN++
Sbjct: 4 GSTVPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNV 63
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RALD +N+T + KP RIM+S RDPT+RKSG GN+F+KNLD SID+KAL DTFS F
Sbjct: 64 SDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLF 123
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
GNILSCKVATD G+S+GYG+V +++E++A AI+K+N M + DK+V+VG F+R+ ER
Sbjct: 124 GNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTERSG 183
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+D T N+YVKN E+ L+K F FG ITS ADG + FG+VNF+ D
Sbjct: 184 QSDWT---NLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHDA 238
Query: 272 AARSVEALNG-----------KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
A +++ALNG +VG+AQKK ERE ELK KF+ + E K++
Sbjct: 239 AVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKYQ 298
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKAL 379
G+NL+VKNLDD + DD+L+E F+E+GTITS +VMR+P G SRG GFV FS+ EEA+KA+
Sbjct: 299 GVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAV 358
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
TEMN K+V+ KP++VALAQRKE RRA+L+AQ +Q R
Sbjct: 359 TEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRR 394
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/441 (48%), Positives = 294/441 (66%), Gaps = 27/441 (6%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ S SLYVGDL V ++ L+++F+Q+G V S+RVCRD TRRSLGY YVN++ +A R
Sbjct: 39 YHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAER 98
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NFT + + RIM+S RDP++R+SG GNIF+KNLD+++DNKAL+DTFS FGNILS
Sbjct: 99 ALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILS 158
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+GYG+V ++ SA AI K+NGML+ KQV VG F+R+ R AD T
Sbjct: 159 CKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVRRDNRAGQADWT 218
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM---RDADG------------KSKCF 261
N+YVK L + + L++ F + G +TS V ++ G KS+ F
Sbjct: 219 ---NLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGF 275
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKE----WYVGKAQKKYEREMELKGKFEQSLKETAD 317
GFVNF++ + A +++EALN + D E Y +AQKK ER EL+ K +Q E +
Sbjct: 276 GFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMN 335
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGISRGSGFVAFSTAEEA 375
KF+G+N+YVKNLD+ +++D ++E F+ +GTITS +VM D N S+G GFV FS EEA
Sbjct: 336 KFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEA 395
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPR-MPMYPPVAPGLGQ 434
+KA+TEMNGKM+++KP+YVALAQR+E RR +L+AQF+Q + PR MPM P G
Sbjct: 396 TKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTGGMPPRGMPMAPGAQGMYGM 455
Query: 435 QLFYGQGPPIIPPQVIYSFLL 455
+ G P + PQ F++
Sbjct: 456 PYWMGAQPGM--PQQPRQFMM 474
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 221/468 (47%), Positives = 294/468 (62%), Gaps = 67/468 (14%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RAL++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNIL
Sbjct: 110 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD- 214
SCKVA D G S+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S +
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEE 229
Query: 215 -KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDA 272
K F NVYVKN+ + TT+++ +++F +FG ITS + RD++ GKS+ FGFVNF + A
Sbjct: 230 MKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESA 289
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
A +V+ LN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D
Sbjct: 290 AAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 349
Query: 333 I-----------------------------SDDKLKELFSEF------------------ 345
I S D KE SE
Sbjct: 350 IDDEKLRDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEESKDEAAEKAE 409
Query: 346 ------GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
S K + G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQR
Sbjct: 410 TKDTKEAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 469
Query: 400 KEERRARLQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
K+ RR++L+A Q R + P+ M PPV G GQQ F
Sbjct: 470 KDVRRSQLEASI-QARNTIRQQQAAAAAGMPQPFMQPPVFYGPGQQNF 516
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 164/347 (47%), Gaps = 73/347 (21%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 137 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 195
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + + + +D + K+ N+++KN+D+ ++ + F
Sbjct: 196 QNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELF 255
Query: 149 STFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FG I S +A DS G+SRG+GFV F + ESA +A+D LN ++++VG +K
Sbjct: 256 EKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKH 315
Query: 208 ERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM---- 251
ERE A K + N+Y+KNLS+ ++ L+ +F +G ITS VM
Sbjct: 316 EREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRDLFSGYGTITSAKVMRDNL 375
Query: 252 ---------------------------------------------RDAD----GKSKCFG 262
+ AD GKSK FG
Sbjct: 376 AAESSSDSEKEAKSEGKENEPPEESKDEAAEKAETKDTKEAKTESKKADKKLLGKSKGFG 435
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
FV F PD+A+++V +N + + K YV AQ+K R +L+ +
Sbjct: 436 FVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 482
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 230/470 (48%), Positives = 291/470 (61%), Gaps = 61/470 (12%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE--- 93
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADGKS 88
Query: 94 -------------ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
A RA+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK ID
Sbjct: 89 FFQFMSFLTFLITAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVID 148
Query: 141 NKALHDTFSTFGNILSCK-----------VATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
NK+++DTFS FGNILSCK VA D G S+GYGFV F+ EE+A++AI K+N
Sbjct: 149 NKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETEEAAQNAIQKVN 208
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLL K+VFVG F + +R +T +F NVYVKN + ++ L+K+F ++G ITS
Sbjct: 209 GMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYNKETLEKLFAKYGAITS 268
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELK 305
VM +DGKSK FGFV F P++A +V+ALN D D + +V +AQKK ER ELK
Sbjct: 269 CDVM-TSDGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSERHAELK 327
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK------------- 352
K EQ E K++G+NLYVKNLD+S+ D+ LK+ F FG ITS K
Sbjct: 328 KKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVGLVPLEFFISLF 387
Query: 353 -VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
VM D NG S+G GFV F EEA+ A+TEMN KMV SKPLYVALAQRKE+RRA+L +Q+
Sbjct: 388 QVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQY 447
Query: 412 SQ------MRPPVGPRMPMYPPVAPGLG--------QQLFYGQGPPIIPP 447
Q M V P MY P G G QQ + GP I P
Sbjct: 448 MQRLASMRMHSNV-PGGGMYNPAQTGPGYYVANPMQQQRNFAGGPQIARP 496
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/429 (50%), Positives = 295/429 (68%), Gaps = 23/429 (5%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S SLY+GDL VN+ L+++FN +G V S+RVCRD TRRSLGY YVNY+ +A R
Sbjct: 6 FSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAER 65
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NFT + GKP RIM+S RDP++R+SG GNIF+KNL + IDNK L+DTFS FGNILS
Sbjct: 66 ALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILS 125
Query: 157 CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
CKV TD + G S+GYG+V ++ E+A SAI+KL+GML++ K+V VG F+R+ R AD
Sbjct: 126 CKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNRPGQADW 185
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
T NV++KN+ TED L++ F FG + S A ++ G S FGFVNF + AA +
Sbjct: 186 T---NVFIKNIPFEWTEDKLREEFEGFGEVVS-AKPKEVQG-SLGFGFVNFATHEAAAAA 240
Query: 276 VEALNGKKFDDKE--------WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
V+ +N K+F E +VG+AQKK ERE EL+ K+E + KF+G+NLYVK
Sbjct: 241 VKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVK 300
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKM 386
NLDD+++DD L++ FS GTITS +VM+D GISRG GFV +ST E+A++A+ EMNGK+
Sbjct: 301 NLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKI 360
Query: 387 VVSKPLYVALAQRKEERRARLQAQFSQMRPPV-GPRMPMYPPVAPGLGQQLFYGQGPPII 445
++ KP++VALAQR++ RRA+L+AQ +Q R + GP YP P G Y GP +
Sbjct: 361 ILGKPIFVALAQRRDVRRAQLEAQHNQGRGNLPGPMGGAYPGAVPMPG---MYRPGPGMQ 417
Query: 446 P----PQVI 450
P PQ++
Sbjct: 418 PAYPVPQMM 426
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LYV +LD +V D L D F+ MG + S RV +DL T S G+G+V Y+ +AT
Sbjct: 291 KFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDAT 350
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA++E+N + GKPI + + R
Sbjct: 351 RAVNEMNGKIILGKPIFVALAQR 373
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/364 (53%), Positives = 262/364 (71%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL ++DSQL+D F+ + SVR+CRD S+ +SL YGYVN+ + H+A RA++
Sbjct: 10 ASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE 69
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N + LNGK IR+M+S RDP RKS GN+F+KNL +SIDN L D F FGNILS KV
Sbjct: 70 VKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKV 129
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
G+S+GYGFVQF+ EESA +AI++LNG L+ DKQ++VG F++K +R S+ TR+
Sbjct: 130 VMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYT 189
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL +E L++ F FG I S AV +D++G SK FGFVNFD+P+DA R++E +
Sbjct: 190 NLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + K YV +AQKK ERE L +FE+ KE K++G N+YVKN+DD++SD+ L+
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS GTITS K+MRD GIS+G GFV FST EEA+KA+ +G M KPLYV+LAQR
Sbjct: 310 DHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQR 369
Query: 400 KEER 403
KE+R
Sbjct: 370 KEDR 373
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 157/289 (54%), Gaps = 17/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAID 186
++++ +L + + LHD FS F + S ++ DS G+S YG+V F + A AI+
Sbjct: 10 ASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
N LN K + V R+ A K+ NV+VKNL+E+ L+ +F +FG I
Sbjct: 70 VKNHSTLNGKAIRV----MWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ V+ DGKSK +GFV F+ + A ++E LNG DK+ YVGK KK +R
Sbjct: 126 SSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDR------ 179
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ NLY+KNLD IS+ L+E FS FG I S V +D NG+S+G GF
Sbjct: 180 ------ISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGF 233
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V F E+A +A+ MNG + SK LYVA AQ+K ER L QF + R
Sbjct: 234 VNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKR 282
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 154/284 (54%), Gaps = 17/284 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L S+++S L D+F + G ++S +V +S GYG+V +
Sbjct: 91 DARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEE 149
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA----GNIFIKNLDKSIDNKALHDTF 148
A A++ LN + K I + + SG N+++KNLD I L + F
Sbjct: 150 SANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKF 209
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S+FG I+S VA DS G S+G+GFV FDN E AK A++ +NG+ L K ++V +K E
Sbjct: 210 SSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAE 269
Query: 209 RESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE K + +N+YVKN+ + +++ L+ F G ITS +MRD G
Sbjct: 270 REQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKG 329
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
SK FGFV F P++A ++V + +G F K YV AQ+K +R
Sbjct: 330 ISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKEDR 373
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/353 (54%), Positives = 261/353 (73%), Gaps = 2/353 (0%)
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+G V S+RVCRD TRRSLGY YVN+ A + RAL++LN+TP+ GKP RIM+S RDP +
Sbjct: 2 IGSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPAL 61
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+ GNIFIKNLD+SIDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A+
Sbjct: 62 RKTSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAE 121
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN--NVYVKNLSETTTEDDLKKIFG 240
+AI +NGMLLNDK V+VG + ++ER++ D+ R N N+YVK L+ +E + ++F
Sbjct: 122 AAIQAVNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFA 181
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
++G +TS + D DGKSK FGFVNF D + AA+++ L+ + + YV +AQKK ER
Sbjct: 182 KYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGER 241
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
E ELK +EQ + + K++G+NLYVKNL+D + ++K+ F+ FGTITS K+MRD G
Sbjct: 242 EEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGA 301
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
S+G GFV FS+ +EA+KA+TE+NGKM KPLYV+LAQRK+ R+ +L+AQ +Q
Sbjct: 302 SKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQ 354
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 150/288 (52%), Gaps = 19/288 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ L+D F G ++S +V D S GYG+V+Y A A+
Sbjct: 68 NIFIKNLDESIDNKALHDTFAAFGNILSCKVALD-ENGLSKGYGFVHYEGGEAAEAAIQA 126
Query: 101 LNFTPLNGKPIRIMYSY----RDPTIR--KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + R I +S N+++K L I + F+ +G +
Sbjct: 127 VNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFAKYGQV 186
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S + D G+S+G+GFV F + E+A A+ +L+ + ++V +K ERE
Sbjct: 187 TSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGEREEELK 246
Query: 215 KT----RFN--------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
K+ +++ N+YVKNL + E+ + F FG ITST +MRD G SK FG
Sbjct: 247 KSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGASKGFG 306
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FV F PD+A ++V LNGK F K YV AQ+K R+ +L+ + Q
Sbjct: 307 FVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQ 354
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 19/188 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+LYV L +++++ +LF + GQV S + D +S G+G+VN+ A +AL
Sbjct: 160 TNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVD-QDGKSKGFGFVNFADHEAAAKALT 218
Query: 100 ELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNK 142
EL+ + G+ + + + + D +++ G N+++KNL+ +D +
Sbjct: 219 ELHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGV-NLYVKNLEDDMDEE 277
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
+ F+ FG I S K+ D G S+G+GFV F + + A A+ +LNG + K ++V
Sbjct: 278 KVTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSL 337
Query: 203 FLRKQERE 210
RK R+
Sbjct: 338 AQRKDVRK 345
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/434 (49%), Positives = 283/434 (65%), Gaps = 34/434 (7%)
Query: 3 QVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
Q P AP PA VG A + SLYVG+LD +V+++ L+++FN
Sbjct: 145 QTHSAPPAPQMYPPHIPPAA--------VGGAAVPQTASLYVGELDHTVSEAMLFEIFNM 196
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+G V S+RVCRD TRRSLGY YVNY A + R RDP +
Sbjct: 197 IGPVASIRVCRDAVTRRSLGYAYVNYLNAADGER---------------------RDPAL 235
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+G GNIFIKNLD++IDNKALHDTF+ FGN+LSCKVATD G+SRGYG+V ++ ESA+
Sbjct: 236 RKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGYGYVHYETAESAE 295
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFG 240
+AI +N MLLNDKQVFVG + ++ER+S D+ R F N+YVKNL TE + + +F
Sbjct: 296 AAIKAVNRMLLNDKQVFVGHHISRKERQSQIDEARAQFTNIYVKNLDTDITEAEFRVMFE 355
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
EFG ITS + D +GKS+ FGFVN+++ ++A R+V ++ K+ K +VG+AQKK ER
Sbjct: 356 EFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSER 415
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
+ EL E + +E +K+ G+NLYVKNLDD + DDKL+ F FGTITSCKVMR+ I
Sbjct: 416 QSELARSHEAAKQERQNKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMRNERDI 475
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP 420
S+G GFV FST +EA+KA+TEMN KM+ +KPLYV+LAQR++ RR +L+ Q Q
Sbjct: 476 SKGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVSLAQRRDVRRQQLEGQIMQRNQ---M 532
Query: 421 RMPMYPPVAPGLGQ 434
RM P + PG Q
Sbjct: 533 RMQQAPMMGPGYMQ 546
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/320 (56%), Positives = 249/320 (77%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 182
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 183 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 242
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ NVYVKN++ TE++ +++F ++G +TS+ + RD +GKS+ FGFVNF D AA++V
Sbjct: 243 NYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAV 302
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F +E YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D I DD
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDD 362
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+++FSEFG ITS KVMRD
Sbjct: 363 KLRQMFSEFGPITSAKVMRD 382
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 162/290 (55%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V +++ + A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 178
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D +G SK +GFV+++ + AA++++ +NG ++K+ YVG K +R+
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ---- 234
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN++ +++++ +ELFS++G +TS + RD G SRG G
Sbjct: 235 SKFEEM------KANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFG 288
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV FST + A+KA+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAAR 338
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 11/96 (11%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+G GFV FS ++A+KA+ EMN +MV KPLYVALAQRK+ R+++L+A Q R +
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEASI-QARNQL 496
Query: 419 GPRMPMYPPVAPGLGQQ-----LFY--GQGPPIIPP 447
RM A GL QQ ++Y GQ P +PP
Sbjct: 497 --RMQQAAAQA-GLPQQYMQAPIYYAPGQQPNFMPP 529
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/394 (52%), Positives = 283/394 (71%), Gaps = 8/394 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL V ++ LY+ F+QMG V+S+RVCRD +R+SLGY YVNY +A AL
Sbjct: 7 NASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHAL 66
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELNF ++ KP RIM++ R+P R+SGAGNIFIKNL+K IDNKAL+DTFS FG ILSCK
Sbjct: 67 EELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCK 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
VA D G+SRGYGFV F+ EE A+ AID +NG +L + V V FL ++ERE +T +
Sbjct: 127 VAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGGRT-Y 185
Query: 219 NNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
N+YVKNL ++ T DDLKK+F +FG ITST + +D + KS+ FGFVNF++ + A +VE
Sbjct: 186 TNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVE 245
Query: 278 ALNGKKFD-DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
A+N K+ + D++ +VG+A KK+ERE ELK ++ +E +K + NLY+K+L + +++D
Sbjct: 246 AMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTED 305
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L++ FS+FGTITS K+M D NG SRG GFV F +A+EA+ A+ EM+G M+ KPLYVAL
Sbjct: 306 ALRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVAL 365
Query: 397 AQRKEERRARLQAQFS---QMRPPVGPRMPMYPP 427
A RK +R+ +L ++ + QM P+G M PP
Sbjct: 366 ALRKVDRQKQLASRRTMPGQM--PMGYLPFMMPP 397
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTA 372
A+ + +LYV +L +++ L E FS+ G++ S +V RD +SR G +V +
Sbjct: 2 AEHQQNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRD--AVSRQSLGYAYVNYQQH 59
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQR 399
+A AL E+N + + KP + AQR
Sbjct: 60 ADAKHALEELNFEKIHDKPCRIMWAQR 86
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/320 (57%), Positives = 244/320 (76%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 119
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTFS FGNILSCK
Sbjct: 120 EDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCK 179
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D LG S+GYGFV ++ E+A AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 180 VAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKA 239
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN+ E+ ++++ K+F +G + S + RD +GKS+ FGFVNF + AA++V
Sbjct: 240 NFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAV 299
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K+F K+ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D + DD
Sbjct: 300 EELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDD 359
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+ELFS +GTITS KVMRD
Sbjct: 360 KLRELFSSYGTITSAKVMRD 379
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 161/297 (54%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 53 PSTAAQHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 112
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN + + + +R+ KT NV++KNL L
Sbjct: 113 ADGERALEDLNYTSIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 168
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F +FG I S V +D G SK +GFV+++ + A ++++++NG +DK+ +VG K
Sbjct: 169 FSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKR 228
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ +L+ E F N+Y+KN+D+S+SD++ +LF +G + S + RD N
Sbjct: 229 DRQSKLE--------EMKANF--TNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDEN 278
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV F++ E A+KA+ E+N K K LYV AQ+K ER L+ Q+ R
Sbjct: 279 GKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAAR 335
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 41/51 (80%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
G S+G GFV FS +EASKA++EMN KMV KPLYVALAQRK+ RR +L+A
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEA 490
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/436 (50%), Positives = 290/436 (66%), Gaps = 33/436 (7%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G + F S SLYVGDL ++ L+++FN +G V S+RVCRD TRRSLGY YVN++
Sbjct: 3 GASSSVPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFH 62
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+A RALD +N+T + KP RIM+S RDPT+RKSG GN+F+KNLD SID+KAL DTFS
Sbjct: 63 NVSDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFS 122
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKVATD G+S+GYG+V +++E++A AI+K+N M + DK+V+VG F+R+ ER
Sbjct: 123 LFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER 182
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+D T N+YVKN E L+K F F ADG + FG+VNF+
Sbjct: 183 SGQSDWT---NLYVKNFPADWDEATLRKAFEMFAA---------ADGSA--FGWVNFEGH 228
Query: 270 DDAARSVEALNGKK-----------FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
D A +++ALNG +VG+AQKK ERE ELK KF+ + E K
Sbjct: 229 DAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAKFDAAKIERIKK 288
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASK 377
++G+NL+VKNLDD++ DD+L+E F+E+GTITS +VMR+P G SRG GFV FS+ EEA+K
Sbjct: 289 YQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAK 348
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ------MRPPVGPRMP-MYPPVAP 430
A+TEMN K+V+ KP++VALAQRKE RRA+L+AQ +Q + P G MP MY AP
Sbjct: 349 AVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRLHPAHLSAPYGAAMPIMYAAGAP 408
Query: 431 GLGQQLFYGQGPPIIP 446
G QG P +P
Sbjct: 409 GGHPMGMAPQGHPGVP 424
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/388 (53%), Positives = 275/388 (70%), Gaps = 10/388 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRA---LDELN--FTPLNGKPIRIMY-SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
D ++ F GK +++ S RDP++RKSG GN+FIKNLDKSIDNKAL+DT
Sbjct: 65 GEYGNLLFDRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDT 124
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++
Sbjct: 125 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 183
Query: 208 EREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
ERE+ A F NVY+KN E ++ LK+ F ++G S VM D GKSK FGFV+
Sbjct: 184 EREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVS 243
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
F+ +DA ++V+ +NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY
Sbjct: 244 FERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLY 303
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLDD+I D+KL++ FS FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG+
Sbjct: 304 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGR 362
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
+V SKPLYVALAQRKEER+A L Q+ Q
Sbjct: 363 IVGSKPLYVALAQRKEERKAHLTNQYMQ 390
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 106 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 163
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L +TFS +G
Sbjct: 164 MNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKT 223
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A+D +NG +N K +FVG +K ER++
Sbjct: 224 LSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAEL- 282
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+Y+KNL +T ++ L+K F FG ITS VM + +G+SK F
Sbjct: 283 KRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGF 341
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 342 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 392
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 165/297 (55%), Gaps = 26/297 (8%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F + D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF------QQPAD 64
Query: 187 KLNGMLLNDK-----QVFVG---PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
G LL D+ V G L ER+ + K+ NV++KNL ++ L
Sbjct: 65 GEYGNLLFDRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDT 124
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + +
Sbjct: 125 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 183
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL K + E N+Y+KN + + D++LKE FS++G S KVM DP+
Sbjct: 184 EREAELGAKAK----------EFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPS 233
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G S+G GFV+F E+A+KA+ +MNGK V K ++V AQ+K ER+A L+ +F Q++
Sbjct: 234 GKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLK 290
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/361 (53%), Positives = 257/361 (71%), Gaps = 3/361 (0%)
Query: 19 SPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR 78
+P + N+ A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TR
Sbjct: 31 TPEVTAVENSTPASAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR 90
Query: 79 RSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKS 138
RSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +
Sbjct: 91 RSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSA 150
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+V
Sbjct: 151 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210
Query: 199 FVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
FVG + K++R+S + K F NVY+KNL +D+ +K+F +FG ITS + RD +G
Sbjct: 211 FVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEG 270
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
KS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A
Sbjct: 271 KSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKA 330
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
K++G+NLYVKNL D I D+KL+ELF +GTITS KVMRD N + R S + +EA+
Sbjct: 331 SKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTN-VERESSPESAGKEKEAN 389
Query: 377 K 377
K
Sbjct: 390 K 390
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 144/444 (32%), Positives = 220/444 (49%), Gaps = 77/444 (17%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 135 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAA 193
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + + S +D + K+ N++IKNLD ID+ F
Sbjct: 194 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMF 253
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I S ++ D G+SRG+GFV F ESA++A++++N + ++++VG +K E
Sbjct: 254 EKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHE 313
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
RE A K + N+YVKNL++ ++ L+++FG +G ITS VMRD +
Sbjct: 314 REEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNV 373
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
+ + P+ A + EA K +DKE + + + E + E+ KE
Sbjct: 374 ERES-------SPESAGKEKEA---NKENDKEATPEAEKAEEKAEEKPAESSEEKDKEAK 423
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
SD K P G S+G GFV FS+ +EAS
Sbjct: 424 K----------------SDKK-------------------PFGKSKGFGFVCFSSPDEAS 448
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG----------PRMPMYP 426
KA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R + P+ M P
Sbjct: 449 KAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTIRQQQAAAAAGMPQPYMQP 507
Query: 427 PVAPGLGQQLFY--GQGPPIIPPQ 448
V G GQQ F GQ PPQ
Sbjct: 508 AVFYGPGQQGFIPGGQRGMAFPPQ 531
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N + A+
Sbjct: 51 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 110
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ LN L+ K + +R+ KT NV++KNL L F FG I
Sbjct: 111 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 166
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K +R+
Sbjct: 167 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ---- 222
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD G SRG G
Sbjct: 223 SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFG 276
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV FST E A A+ EMN K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 277 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 326
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 252/345 (73%), Gaps = 3/345 (0%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A P+P + + +A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 26 AAPAPEVTAVESTTAP-NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDA 84
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNL
Sbjct: 85 VTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 144
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLND
Sbjct: 145 DSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLND 204
Query: 196 KQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K+VFVG + K++R+S + K F NVY+KN+ + TE++ +++F +FG ITS + RD
Sbjct: 205 KKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD 264
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+GKS+ FGFVNF + A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 265 QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARL 324
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD N
Sbjct: 325 EKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 15/306 (4%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRG 169
+ + S P + + ++++ LD S+ L++ FS+ G + S +V D++ + S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
Y +V ++N + A++ LN L+ K + +R+ KT NV++KNL
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG K +R+ KFE+ K N+Y+KN+D +++++ +ELF +FG IT
Sbjct: 208 FVGHHISKKDRQ----SKFEEM------KANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K ER L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRK 317
Query: 410 QFSQMR 415
Q+ R
Sbjct: 318 QYEAAR 323
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 13/102 (12%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTI 488
Query: 419 G----------PRMPMYPPVAPGLGQQLFY-GQ-GPPIIPPQ 448
P+ M P V G GQQ F GQ G PPQ
Sbjct: 489 RQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQ 530
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/434 (48%), Positives = 278/434 (64%), Gaps = 50/434 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + ++ LYD F G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++R+SG GN+FIKNLD+SIDNKAL+DTFS+FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE--RESTADKTR 217
D G S+G+GFV ++++ESA+ AI+K+NGML+ DK+VFV F + + RE
Sbjct: 122 VCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKH 180
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSV 276
F N++VKNL ++ D L K F +FG + S V+ D G SKC GF++F + D A +V
Sbjct: 181 FTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAV 240
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E ++ K+ + K+ Y G+AQKK ER ELK K+E+ +E +++G+NLYVKNLDDSI D+
Sbjct: 241 EIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDE 300
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
L+E F +FG ITS KV+ D N
Sbjct: 301 GLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAPGP 360
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
G S+G GFV FS+ EEA+KA+TEMNG++ KPLYV LAQRKE+R+A LQ Q+
Sbjct: 361 EKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQY 420
Query: 412 SQMRPPVGPRMPMY 425
Q R G RM +
Sbjct: 421 MQ-RVSTGIRMQAF 433
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 62/241 (25%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GDA + T+L+V +L S + L F Q G+VVS +V D +T S +G++++
Sbjct: 175 GDAAKHF-TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEH 233
Query: 92 HEATRALDELNFTPLNGK---------------PIRIMYS-YRDPTIRKSGAGNIFIKNL 135
+A A++ ++ + GK ++ Y + I++ N+++KNL
Sbjct: 234 DQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNL 293
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATD--------------------------------- 162
D SID++ L + F FGNI S KV TD
Sbjct: 294 DDSIDDEGLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEA 353
Query: 163 ------------SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
G+S+G+GFV F + E A A+ ++NG + K ++VG RK++R+
Sbjct: 354 AGDAPGPEKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRK 413
Query: 211 S 211
+
Sbjct: 414 A 414
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 252/345 (73%), Gaps = 3/345 (0%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A P+P + + +A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 26 AAPAPEVTAVESTTAP-NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDA 84
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNL
Sbjct: 85 VTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 144
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLND
Sbjct: 145 DSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLND 204
Query: 196 KQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K+VFVG + K++R+S + K F NVY+KN+ + TE++ +++F +FG ITS + RD
Sbjct: 205 KKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD 264
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+GKS+ FGFVNF + A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 265 QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARL 324
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD N
Sbjct: 325 EKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 15/306 (4%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRG 169
+ + S P + + ++++ LD S+ L++ FS+ G + S +V D++ + S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
Y +V ++N + A++ LN L+ K + +R+ KT NV++KNL
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG K +R+ KFE+ K N+Y+KN+D +++++ +ELF +FG IT
Sbjct: 208 FVGHHISKKDRQ----SKFEEM------KANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K ER L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRK 317
Query: 410 QFSQMR 415
Q+ R
Sbjct: 318 QYEAAR 323
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 13/102 (12%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTI 488
Query: 419 G----------PRMPMYPPVAPGLGQQLFY-GQ-GPPIIPPQ 448
P+ M P V G GQQ F GQ G PPQ
Sbjct: 489 RQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQ 530
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/410 (48%), Positives = 276/410 (67%), Gaps = 18/410 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V D QL+D F+ + SVR+CRD ST RSL YGYVN+ + +AT A++
Sbjct: 15 SLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEV 74
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + LNG+ IR+M+S RD RKSG GN+F+KNL SI++ L + F FGN+LS KVA
Sbjct: 75 MNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVA 134
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
T G+S+GYGFVQF++EESA +AI+ LNG + DKQ++VG F+RK +R ++ N
Sbjct: 135 TSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTN 194
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YVKNL E+ L++ F EFG I+S + RD +G S+ FGF+NF++ DDA R++E LN
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLN 254
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G + K Y+ +AQKK ERE L+ +E+ KE K++G N+YVKN+DD ++D++L+E
Sbjct: 255 GSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRE 314
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS+FGTITS K+MRD GI++G GFV FS +EA +A+ + G M KPLY+A+AQRK
Sbjct: 315 RFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRK 374
Query: 401 EERRARLQAQFSQMRPPV-GPRMPMY---------------PPVA--PGL 432
E+R+ +L+ QF+Q + GP ++ PPVA PGL
Sbjct: 375 EDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVASRPGL 424
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 167/300 (55%), Gaps = 23/300 (7%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
DAR+ +++V +L S+N L +LF + G V+S +V +S GYG+V + +
Sbjct: 94 ADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATS-DDGKSKGYGFVQFESE 152
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYR-------DPTIRKSGAGNIFIKNLDKSIDNKAL 144
A A++ LN + K I + R +P I+ + N+++KNLD I + L
Sbjct: 153 ESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYT---NLYVKNLDPEIGEEHL 209
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ FS FG I S ++ D G SRG+GF+ F+N + AK A++ LNG L K +++
Sbjct: 210 QEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQ 269
Query: 205 RKQERESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+K ERE K + +NVYVKN+ + T+++L++ F +FG ITS+ +MR
Sbjct: 270 KKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMR 329
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D G +K FGFV F +PD+A R+V L G F K Y+ AQ+K +R+M+LK +F Q L
Sbjct: 330 DDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRL 389
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 2/327 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KNL +D+ +K+F +FG ITS + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN 358
I D+KL+ELF +GTITS KVMRD N
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTN 374
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE 271
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 272 GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 63/106 (59%), Gaps = 13/106 (12%)
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
+ P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QA 486
Query: 415 RPPVG----------PRMPMYPPVAPGLGQQLFY--GQGPPIIPPQ 448
R + P+ M P V G GQQ F GQ PPQ
Sbjct: 487 RNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQ 532
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 2/327 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KNL +D+ +K+F +FG ITS + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN 358
I D+KL+ELF +GTITS KVMRD N
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTN 374
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE 271
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 272 GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 63/106 (59%), Gaps = 13/106 (12%)
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
+ P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QA 486
Query: 415 RPPVG----------PRMPMYPPVAPGLGQQLFY--GQGPPIIPPQ 448
R + P+ M P V G GQQ F GQ PPQ
Sbjct: 487 RNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQ 532
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/341 (58%), Positives = 256/341 (75%), Gaps = 5/341 (1%)
Query: 76 STRRSLGYGYVNY-NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
S R SLG +N+ N A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKN
Sbjct: 9 SRRPSLGGIILNFENFLLAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKN 68
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLN
Sbjct: 69 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 127
Query: 195 DKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S VM
Sbjct: 128 DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 187
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ
Sbjct: 188 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 247
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+
Sbjct: 248 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 306
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 307 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 347
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 63 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 120
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 121 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 180
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 181 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 240
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 241 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 299
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 300 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 349
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 150 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 206
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 207 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 265
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 266 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 324
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 325 PLYVALAQRKEERQA-----HLTNQYMQRMA 350
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/410 (49%), Positives = 278/410 (67%), Gaps = 5/410 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + D L+D F++ + SVR+CRD S+ RSL YGYVN+ + +A+ A++
Sbjct: 12 ASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIE 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T L+GK IR+M+S+RDP R+SG GN+F+KNL SIDN L F FGNILSCKV
Sbjct: 72 AKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
G+S+GYGFVQF++EE A +AI+KLNG +++ KQ++ G F+RK +R ++
Sbjct: 132 VVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPNPDAKYT 191
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL TE+ L++ F EFG I S + +D +G S+ FGFVNF+ P+DA R++EAL
Sbjct: 192 NLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEAL 251
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + K YV +AQKK ERE L+ +FE+ E K+ G N+YVKN+DD+++DD L+
Sbjct: 252 NGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLR 311
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E FS G ITS K+MRD GIS+G GFV FST +EASKA+ +G M KPLYVA+AQR
Sbjct: 312 EHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQR 371
Query: 400 KEERRARLQAQFSQ-MRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
KE+R+A+LQ ++Q M GP PV PG L+Y P +IPP+
Sbjct: 372 KEDRQAQLQLHYAQRMAGLAGPST----PVIPGGYPPLYYTAPPGVIPPR 417
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/344 (56%), Positives = 253/344 (73%), Gaps = 14/344 (4%)
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD R L + A RALD +NF + GKP+RIM+S RDP++RKSG GNIF
Sbjct: 220 CRDEPQRPQLPH----------AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIF 269
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
IKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGM
Sbjct: 270 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 328
Query: 192 LLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S
Sbjct: 329 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 388
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFE
Sbjct: 389 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 448
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
Q ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV F
Sbjct: 449 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCF 507
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
S+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 508 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 551
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 169/291 (58%), Gaps = 23/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 267 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 324
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGN 153
+N LN + + + ++ R++ G N++IKN + +D++ L D F FG
Sbjct: 325 MNGMLLNDRKV-FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGP 383
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 384 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 443
Query: 214 DK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK F
Sbjct: 444 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGF 502
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 503 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 553
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 354 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 410
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 411 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 469
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 470 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 528
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 529 PLYVALAQRKEERQA-----HLTNQYMQRMA 554
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/351 (55%), Positives = 258/351 (73%), Gaps = 12/351 (3%)
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
+ V V RDL+ + ++ +A RALD +NF + GKP+RIM+S RDP++RK
Sbjct: 80 KTVQVPALRDLT--------FYYSSSRQDAERALDTMNFDVIKGKPVRIMWSQRDPSLRK 131
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ A
Sbjct: 132 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERA 190
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
I+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+F
Sbjct: 191 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 250
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G S VM D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+
Sbjct: 251 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 310
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
ELK KFEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+
Sbjct: 311 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSK 369
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 370 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 420
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 136 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 193
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 194 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 253
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 254 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 313
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 314 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 372
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 373 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 422
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 223 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 279
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 280 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 338
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 339 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 397
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 398 PLYVALAQRKEERQA-----HLTNQYMQRMA 423
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/399 (50%), Positives = 271/399 (67%), Gaps = 30/399 (7%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY++FN +G V S+RVCRD TRRSLGY YVN++ +A RALD
Sbjct: 34 ASLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALD 93
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN++P+ GK RIM+S+RDPT+RK+G N+F+KNLDK+IDNKAL+DTFS FGNILSCKV
Sbjct: 94 TLNYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKV 153
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR- 217
ATD G+SRGYGFV F+N+ESA AI KLNGM++ +K V+VGPF + ER E D+ R
Sbjct: 154 ATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAERAEQHGDEPRK 213
Query: 218 FNNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+K+L E+ TTE+D++K F EFG ITS A+ D G+ F FVN++D D AA++V
Sbjct: 214 FTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDRKGRR--FAFVNYEDFDSAAKAV 271
Query: 277 EALNGKKFDDKE-----------------------WYVGKAQKKYEREMELKGKFEQSLK 313
EA+NGK +E YV +AQ K ER EL+ KF+
Sbjct: 272 EAMNGKDMRTQEEIDAGKGEEESTEEGSDEMPEYKLYVTRAQTKTERSAELRNKFQAKNT 331
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTA 372
E + NLYVKNL + + D+KL+++F +FG ITS KVM D N G+SRG GFV F+
Sbjct: 332 EKVGN-QSCNLYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQ 390
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
+ KA+ M+ K+ KPL+VA+A++++ R RLQ ++
Sbjct: 391 ADGEKAIQAMHLKLYGGKPLFVAVAEKRDARIERLQQRY 429
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 156/322 (48%), Gaps = 49/322 (15%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD ++++ LYD F+ G ++S +V D +S GYG+V++ A
Sbjct: 117 RKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVATD-DDGKSRGYGFVHFENDESA 175
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKA-LHD 146
+A+ +LN + K + + ++ R G N++IK+L +S + +
Sbjct: 176 HKAITKLNGMMIGEKAVYVG-PFQKHAERAEQHGDEPRKFTNVYIKHLPESWTTEEDVQK 234
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG---------------- 190
F FG I S + TD G R + FV +++ +SA A++ +NG
Sbjct: 235 AFEEFGKITSVAIQTDRKG--RRFAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDAGKGEE 292
Query: 191 -------MLLNDKQVFVGPFLRKQERESTADKTRFN------------NVYVKNLSETTT 231
+ + +++V K ER S + +F N+YVKNL E
Sbjct: 293 ESTEEGSDEMPEYKLYVTRAQTKTER-SAELRNKFQAKNTEKVGNQSCNLYVKNLPEDVD 351
Query: 232 EDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
++ L+++F +FG ITS VM D + G S+ FGFV F + D ++++A++ K + K +
Sbjct: 352 DEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAMHLKLYGGKPLF 411
Query: 291 VGKAQKKYEREMELKGKFEQSL 312
V A+K+ R L+ ++ +
Sbjct: 412 VAVAEKRDARIERLQQRYRAGI 433
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/478 (45%), Positives = 301/478 (62%), Gaps = 76/478 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN+A++ RAL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 119
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCK 179
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D LG S+GYGFV ++ E+A AI +NGMLLN+K+VFVG + K++R S + K
Sbjct: 180 VAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 239
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ T+D+ +++F ++G ITS ++ D + GKS+ FGFVN+ + +DA ++
Sbjct: 240 NFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKA 299
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI-- 333
V+ LN F ++ YVG+AQKK+ERE EL+ ++E + +E + K++G+NLYVKNL D +
Sbjct: 300 VDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDD 359
Query: 334 ------------------------------------SDDKLKELFSE------------- 344
+DDK K++ E
Sbjct: 360 EELRKIFEAYGAITSAKVMRDVTPLDKAETDAKENKTDDKEKQVDGEPTEDKNGEEQEDM 419
Query: 345 ------FGTIT---SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
T+T KV+ G S+G GFV FS +EA+KA+TE+N KM+ KPLYVA
Sbjct: 420 EELEKKMDTVTIGGEKKVL----GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVA 475
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYP----PVAPGLGQ-QLFYG-QGPPIIPP 447
LAQRKE R+ +L+A Q R V RM P+AP Q Q+F G G P++ P
Sbjct: 476 LAQRKEVRKTQLEASI-QARNQV--RMQQQATAGGPMAPQFMQPQMFMGPNGQPMMMP 530
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +L V+D +L +F G + S +V RD+ T N +
Sbjct: 342 KYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRDV-TPLDKAETDAKENKTDDKE 400
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ +D +PT K+G ++ L+K + DT + G
Sbjct: 401 KQVD------------------GEPTEDKNGEEQEDMEELEKKM------DTVTIGG--- 433
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
KV LG+S+G+GFV F N + A A+ +LN +++ K ++V RK+ R++
Sbjct: 434 EKKV----LGKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKT 485
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/321 (55%), Positives = 247/321 (76%), Gaps = 2/321 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 62 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 121
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 122 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 181
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 182 KVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 241
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F N+Y+KN+S T+D+ + +F FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 242 ANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + D
Sbjct: 302 VDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNLDDDVDD 361
Query: 336 DKLKELFSEFGTITSCKVMRD 356
+KL++LF++FG ITS KVMRD
Sbjct: 362 EKLRQLFADFGPITSAKVMRD 382
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 122
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 178
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D +G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 234
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+Y+KN+ ++DD+ ++LF+ FG +TS + RD G SRG G
Sbjct: 235 SKFEEM------KANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFG 288
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV F+T E A+KA+ ++NGK + LYV AQ+K ER L+ + R
Sbjct: 289 FVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 338
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 9/93 (9%)
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQM 414
+G S+G GFV FS ++A+KA+ EMN +MV KPLYVALAQRK+ R+++L+A +Q+
Sbjct: 436 HGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQL 495
Query: 415 RPPVG------PRMPMYPPVAPGLGQQLFYGQG 441
R P+ M PPV GQQ + QG
Sbjct: 496 RMQQAAAAAGMPQQYMQPPVFYAAGQQPVFPQG 528
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 248/322 (77%), Gaps = 3/322 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S D K
Sbjct: 179 KVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN++ T+D+ + +F ++G +TS+++ RD + GKS+ FGFVNF +DA++
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LN K+F + YVG+AQKK+ERE EL+ +E + +E A K++G+NLY+KNLDD +
Sbjct: 299 AVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 335 DDKLKELFSEFGTITSCKVMRD 356
D+KL++LFSEFG ITS KVMRD
Sbjct: 359 DEKLRQLFSEFGPITSAKVMRD 380
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S V +D +G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGIS 361
E+K F N+YVKN++ ++DD+ + LF ++G +TS + RD G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
RG GFV F++ E+ASKA+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 165/345 (47%), Gaps = 71/345 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD+++++ L+D F G ++S +V +D S GYG+V+Y A
Sbjct: 144 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAA 202
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
++A+ +N LN K + + + +D + K+ NI++KN++ + + F
Sbjct: 203 SQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLF 262
Query: 149 STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
+G++ S +A D G+SRG+GFV F + E A A+ +LN + + ++VG +K
Sbjct: 263 EKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKH 322
Query: 208 EREST------------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA- 254
ERE A K + N+Y+KNL + ++ L+++F EFG ITS VMRD+
Sbjct: 323 EREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSI 382
Query: 255 -----------------------------DGKSK-----------------CFGFVNFDD 268
D K + FGFV F +
Sbjct: 383 TEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFAN 442
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
PDDA ++V +N + ++K YV AQ+K R K + EQS++
Sbjct: 443 PDDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 11/90 (12%)
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPM 424
GFV F+ ++A+KA+ EMN +MV +KPLYVALAQRK+ R+ +L+ Q Q R + RM
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQARNQL--RM-Q 491
Query: 425 YPPVAPGLGQQ-----LFYGQG--PPIIPP 447
A G+ QQ +FYG G P +PP
Sbjct: 492 QAAAAAGMPQQYMQAPVFYGPGSQPGFMPP 521
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/322 (59%), Positives = 248/322 (77%), Gaps = 4/322 (1%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQ 320
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 93
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + F FG
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 272
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 123 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 179
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 238
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 239 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 297
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 298 PLYVALAQRKEERQA-----HLTNQYMQRMA 323
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/382 (52%), Positives = 268/382 (70%), Gaps = 6/382 (1%)
Query: 30 GVGDARQ-FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G+ D +Q + S SLYVGDL V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY
Sbjct: 20 GLRDNQQLYNSASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNY 79
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ +A AL+ LN+ + G P RIM+S +DPT+RKSGAGNIF+KNLD+SID KA +DTF
Sbjct: 80 YSVQDAEAALESLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTF 139
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FG ILSCKVA D G S+GYGFV +D EESAK AI+K+NGM++ K+V V PF++KQ+
Sbjct: 140 SHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQD 199
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
R+ A F N+YV+N + E+ LK+ ++G ITS +M DGK + F FVNF +
Sbjct: 200 RD-PASVDVFTNLYVRNFPVSWDEEALKQFLDKYGEITS--MMIKEDGKGRKFAFVNFAE 256
Query: 269 PDDAARSVEALNGKKFDD--KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
P+ A +VEALNG K ++ + V Q K +R+ LK ++ L + NLY+
Sbjct: 257 PEMAKEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYI 316
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLDDS +D+ L+ELF +FG+ITSCK+MRD +G+SRG GFV FS EEA+KA+ M+ K+
Sbjct: 317 KNLDDSFTDESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKI 376
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
V KPLYV LA++KE+R +RLQ
Sbjct: 377 VKGKPLYVGLAEKKEQRLSRLQ 398
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/322 (59%), Positives = 247/322 (76%), Gaps = 4/322 (1%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQ 320
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 93
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 153
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 272
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 123 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 179
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 238
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 239 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 297
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 298 PLYVALAQRKEERQA-----HLTNQYMQRMA 323
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/322 (59%), Positives = 247/322 (76%), Gaps = 4/322 (1%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 6 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 65
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 66 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 124
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 125 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 184
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 185 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 244
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 245 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 303
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 304 LYVALAQRKEERQAHLTNQYMQ 325
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 41 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 98
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 99 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 158
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 159 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 218
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 219 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 277
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 278 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 327
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 128 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 184
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 185 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 243
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 244 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 302
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 303 PLYVALAQRKEERQA-----HLTNQYMQRMA 328
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/432 (47%), Positives = 281/432 (65%), Gaps = 65/432 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN+A++ RAL
Sbjct: 52 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 111
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + GKP RIM+S RDP +RK+G GNIFIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 112 EELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 171
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G SRGYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R S + K
Sbjct: 172 VAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 231
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ TT+D+ +++F ++G ITS ++ RD +GK + FGFVN+ +DA ++V
Sbjct: 232 NFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAV 291
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD----- 331
+ LN F ++ YVG+AQKK+ERE EL+ ++E +E + K+ G+NLYVKNL D
Sbjct: 292 DELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDE 351
Query: 332 ----------SISDDKL-----------------------------------------KE 340
SI+ K+ +E
Sbjct: 352 ELRKVFEAYGSITSAKVMRDTTPADQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEE 411
Query: 341 LFSEFGTIT---SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L + T+T KV+ G S+G GFV FS +EA+KA+TE+N KM+ KPLYVALA
Sbjct: 412 LTKKLDTVTIGGEKKVL----GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALA 467
Query: 398 QRKEERRARLQA 409
QRKE R+++L+A
Sbjct: 468 QRKEVRKSQLEA 479
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 155/290 (53%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ + A+
Sbjct: 52 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 111
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ K + +R+ KT N+++KNL L F FG I
Sbjct: 112 EELNYTLIKGKPCRI----MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNI 167
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G S+ +GFV+++ + A +++++NG ++K+ +VG K +R
Sbjct: 168 LSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDR----M 223
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D +DD+ +ELF ++G ITS + RD G RG G
Sbjct: 224 SKFEEM------KANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFG 277
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV + E+A+KA+ E+N S+ LYV AQ+K ER L+ Q+ R
Sbjct: 278 FVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQR 327
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/320 (59%), Positives = 247/320 (77%), Gaps = 4/320 (1%)
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNIL
Sbjct: 82 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 141
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 142 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 200
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 201 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 260
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 261 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 320
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 321 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 379
Query: 394 VALAQRKEERRARLQAQFSQ 413
VALAQRKEER+A L Q+ Q
Sbjct: 380 VALAQRKEERQAHLTNQYMQ 399
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 115 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 172
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + F FG
Sbjct: 173 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 232
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 233 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 292
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 293 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 351
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 352 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 401
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 202 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 258
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 259 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 317
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 318 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 376
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 377 PLYVALAQRKEERQA-----HLTNQYMQRMA 402
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/476 (44%), Positives = 292/476 (61%), Gaps = 69/476 (14%)
Query: 3 QVQVQPQAP---VAVAAQPS----PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQ 55
QV+ +AP A A PS P T G + Q S SLYVG+LD SV ++
Sbjct: 14 QVEAPTEAPANGTAAGAAPSTEAAPETAGEPSGTAAPATSQPHSASLYVGELDPSVTEAM 73
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T + G+P RIM+
Sbjct: 74 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 133
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV +
Sbjct: 134 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHY 193
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTED 233
+ E+A +AI +NGMLLN+K+VFVG + K++R+S + K F N+YVKN+ + T++
Sbjct: 194 ETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE 253
Query: 234 DLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
+ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +VEALN + ++ YVG
Sbjct: 254 EFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVG 313
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS +G ITS K
Sbjct: 314 RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAK 373
Query: 353 VMRD-----PNGISRGSGF----------------VAFSTAEEASKALTEMNGKMVVSKP 391
VMR+ P +G + S +E+ SK+ + GK +KP
Sbjct: 374 VMREAIVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESEDKSKSEEKSEGKTESAKP 433
Query: 392 --------------------------------------LYVALAQRKEERRARLQA 409
LYVALAQRK+ R+++L+A
Sbjct: 434 EKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEA 489
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 48/286 (16%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++ V D + LF + G++ S + RD T +S G+G+VN++ A+ A++
Sbjct: 239 TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN L G+ + + + R+ +RK N++IKNL ID++
Sbjct: 299 ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 358
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS++GNI S KV +++ V E DK DK G
Sbjct: 359 LRELFSSYGNITSAKVMREAI--------VDVPAETEKGKEADKEKAKEAGDKSEEKG-- 408
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+ + + DK++ SE +E G S + GKSK FGF
Sbjct: 409 ---ESKSESEDKSK---------SEEKSE----------GKTESAKPEKRHLGKSKGFGF 446
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V F +PD+A+++V +N + K YV AQ+K R+ +L+ +
Sbjct: 447 VCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQ 492
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/320 (59%), Positives = 247/320 (77%), Gaps = 4/320 (1%)
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNIL
Sbjct: 87 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 146
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 147 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 205
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 206 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 266 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 325
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 326 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 384
Query: 394 VALAQRKEERRARLQAQFSQ 413
VALAQRKEER+A L Q+ Q
Sbjct: 385 VALAQRKEERQAHLTNQYMQ 404
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 120 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 177
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + F FG
Sbjct: 178 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 237
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 238 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 297
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 298 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 356
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 357 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 406
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 207 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 263
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 264 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 322
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 323 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 381
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 382 PLYVALAQRKEERQA-----HLTNQYMQRMA 407
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/417 (48%), Positives = 268/417 (64%), Gaps = 16/417 (3%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDL V + L+D F+++G V SVRVCRD +T RSL YGYVNY + +A ALD+L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N + + KPIR+M+S RDP R+SG GNIF+KNL+ S+DN +L + FS FG++LSCKVA
Sbjct: 104 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAK 163
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
+ G SRGYGFVQF ++ESA AI LNG L ND+++ V F++K ER + D +F N+
Sbjct: 164 NEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDD-KFTNL 222
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
Y+K+L + TE+ +K F +FG I S +MR DG S FGFV+F +P+ A ++ E ++G
Sbjct: 223 YMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHG 282
Query: 282 KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKEL 341
K YV +AQKK ER+ L+ E+ E K N+Y+KN+ D + DD L+
Sbjct: 283 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRAR 342
Query: 342 FSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
F+E+G ITS KVMRD GISRG GFV +ST EEA + M G M KPLYVA+ QRKE
Sbjct: 343 FAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKE 402
Query: 402 ERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYG-------QGPP----IIPP 447
ERRA+LQ F+Q+ VGP M P P Q+++ QGPP + PP
Sbjct: 403 ERRAKLQQHFAQLARMVGPTNSMIPTGYP----QVYFAHPNAHIPQGPPRHGFVYPP 455
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/365 (52%), Positives = 258/365 (70%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V+DS L D F++ + SVRVC+D ST +SL YGY+N+ + +A RA++
Sbjct: 12 ASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIE 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N + LNGK +R+M+S RDP RKS GN+F+KNL +SIDN L D F +GNILS KV
Sbjct: 72 LKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
T G+S+GYGFVQF++EES+K AI+KLNG + DK+++VG F++K +R R+
Sbjct: 132 VTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYT 191
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL +E L++ F FG I S + +D +G SK FGFVN+D+PDDA +++EA+
Sbjct: 192 NLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAM 251
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + K YV +AQKK ERE L +FE+ KE K++G N+YVKN+DD +SD++L+
Sbjct: 252 NGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELR 311
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS GTITS K+MRD GIS+G GFV FST EEA+KA+ +G M KPLYVALAQR
Sbjct: 312 DHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQR 371
Query: 400 KEERR 404
KE+R+
Sbjct: 372 KEDRK 376
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 157/290 (54%), Gaps = 27/290 (9%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +L+V +L S++++ L D+F + G ++S +V +S GYG+V + +
Sbjct: 93 DARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTS-EDGKSKGYGFVQFESEE 151
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA---------GNIFIKNLDKSIDNKA 143
+ A+++LN + K + Y ++KS N+++KNLD +
Sbjct: 152 SSKVAIEKLNGYTVADKEL-----YVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEAT 206
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS+FG I+S +A D+ G S+G+GFV +DN + AK A++ +NG L K ++V
Sbjct: 207 LQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARA 266
Query: 204 LRKQERESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
+K ERE K + +N+YVKN+ + ++++L+ F G ITS +M
Sbjct: 267 QKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIM 326
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
RD G SK FGFV F P++A ++V +G + K YV AQ+K +R+
Sbjct: 327 RDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRK 376
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 254/355 (71%), Gaps = 10/355 (2%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A P+P + A+N S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQITTNVPAAQGEVPTPTSAAPAHNQN--------SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ ++DD + +F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + A+ +V+ALN F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KVMRD
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 151/290 (52%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ K + +R+ KT NV++KNL L F FG I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D +SDD ++LF + G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFG 272
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 71/247 (28%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL V+D DLF + G + S + RD +S G+G+VNY A+ A+D
Sbjct: 229 TNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKHEAASAAVD 287
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN T G+ + + + R+ +RK N++IKNL+ +D++
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEK 347
Query: 144 LHDTFSTFGNILSCKV------------ATDS---------------------------- 163
L D F+ FG I S KV ATD
Sbjct: 348 LRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDETKEETEKPEEAKDESKEDSDDKKD 407
Query: 164 --------------LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
LG+S+G+GFV F N + A A+ ++N ++ +K ++V RK R
Sbjct: 408 EKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVR 467
Query: 210 ESTADKT 216
++ + T
Sbjct: 468 KNQLEAT 474
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 42/51 (82%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
G S+G GFV FS +EA+KA+TEMN KM+ +KPLYVALAQRK+ R+ +L+A
Sbjct: 423 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEA 473
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
GKSK FGFV F +PD+A ++V +N K ++K YV AQ+K R+ +L+ +
Sbjct: 423 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEATIQ 476
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/382 (52%), Positives = 272/382 (71%), Gaps = 8/382 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVG+L V ++ LY+ + + + V ++++ + Y + +
Sbjct: 5 ASSYPMASLYVGNLHGDVTEAMLYEKLSPR-DLTHLWVIKNITN--CVLYPRLKC-VSLV 60
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 61 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 120
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 121 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 179
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD GKSK FGFV+++ +D
Sbjct: 180 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHED 239
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 240 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 299
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+IT +VM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 300 TIDDEKLRKEFSPFGSITRAEVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 358
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 359 LYVALAQRKEERKAHLTNQYMQ 380
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 116/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD T +S G+G+V+Y +
Sbjct: 183 AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PTGKSKGFGFVSYEKHED 239
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 240 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 299
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I +V + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 300 TIDDEKLRKEFSPFGSITRAEVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 358
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 359 LYVALAQRKEER-----KAHLTNQYMQRVA 383
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/320 (55%), Positives = 243/320 (75%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A+ AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 174 VAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KN++ T+D + +F G +TS+++ RD DGKS+ FGFVNF + A+ +V
Sbjct: 234 NFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAV 293
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K F +E YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + D+
Sbjct: 294 EELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDE 353
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+ +F+EFG ITS KVMRD
Sbjct: 354 KLRTMFTEFGPITSAKVMRD 373
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 176/342 (51%), Gaps = 28/342 (8%)
Query: 86 VNYNAAHEATRALDELNFTPLNGKP---IRIMYSYRD---PTIRKSG-----AGNIFIKN 134
VN +AA + A +LN T ++GKP + + D PT + + ++++
Sbjct: 4 VNNSAAVDQLTA--DLNNTSIDGKPSVDTSVSAATGDDAGPTPNSAAPHPQNSASLYVGE 61
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLL 193
LD S+ L + FS G + S +V D++ + S GY +V +++ + A+++LN L+
Sbjct: 62 LDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLI 121
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
+ + +R+ KT NV++KNL L F FG I S V +D
Sbjct: 122 KGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD 177
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
G SK +GFV+++ + A ++++ +NG ++K+ YVG K +R+ KFE+
Sbjct: 178 ETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQ----SKFEEM-- 231
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
K N+Y+KN+ ++DD+ + LF G +TS + RDP+G SRG GFV F+T E
Sbjct: 232 ----KANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHE 287
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
AS A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 288 AASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKSYEAAR 329
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 162/344 (47%), Gaps = 70/344 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD+++++ L+D F G ++S +V +D T S GYG+V+Y A
Sbjct: 138 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGSSKGYGFVHYETDEAA 196
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
+A+ +N LN K + + + +D + K+ N++IKN+ + + F
Sbjct: 197 QQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAPDVTDDQFRVLF 256
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
G++ S +A D G+SRG+GFV F E+A +A+++LN + ++++VG +K E
Sbjct: 257 EAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHE 316
Query: 209 REST------------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD--- 253
RE A K + N+Y+KNL + ++ L+ +F EFG ITS VMRD
Sbjct: 317 REEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRTMFTEFGPITSAKVMRDSPS 376
Query: 254 -----------ADGKSK-------------------------------------CFGFVN 265
A+ K K FGFV
Sbjct: 377 DDEDEEGKEAEAEDKDKENKKADAEAEAAEAAEEENSDKEKKERKGSKKLGKSKGFGFVC 436
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
F +PDDA ++V +N + + K YV AQ+K R+ +L+ +
Sbjct: 437 FSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQ 480
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 16/91 (17%)
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR-----P 416
GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+++L+A +QMR
Sbjct: 433 GFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQARNQMRMQQAAA 492
Query: 417 PVGPRMP-MYPPVAPGLGQQLFYGQGPPIIP 446
G P M PPV + GQ P +P
Sbjct: 493 AAGMSQPFMQPPV-------FYAGQQPGFVP 516
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/329 (54%), Positives = 245/329 (74%), Gaps = 2/329 (0%)
Query: 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
G A S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN
Sbjct: 52 GAQAAHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYN 111
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
+ +AL+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+
Sbjct: 112 TTIDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFA 171
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+VFVG + K++R
Sbjct: 172 AFGNILSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDR 231
Query: 210 ESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+S + K F N+YVKN+ T+D +++F +FG +TS ++ RD GK++ FGFVNF
Sbjct: 232 QSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFI 291
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ + A+ +V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A K++G+NLYVK
Sbjct: 292 NHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVK 351
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRD 356
NL+D + D+KL+ELF+ +G ITS KVMRD
Sbjct: 352 NLEDDVDDEKLRELFAPYGAITSAKVMRD 380
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 155/290 (53%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 61 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 121 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 176
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ +VG K +R+
Sbjct: 177 LSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQ---- 232
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+ +DD+ +ELF +FG +TS + RD G +RG G
Sbjct: 233 SKFEEM------KANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFG 286
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV F E AS A+ E+NGK + + LYV AQ+K ER L+ + R
Sbjct: 287 FVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAAR 336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 11/96 (11%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+G GFV F+ +EA+KA+TEMN +MV KPLYVALAQRK+ R+++L+A Q R +
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASI-QARNQI 505
Query: 419 GPRMPMYPPVAPGLGQQ-----LFYGQG--PPIIPP 447
RM A GL QQ +FYG G P +PP
Sbjct: 506 --RM-QQAAAAAGLPQQFIQAPMFYGPGQQPGFMPP 538
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/390 (50%), Positives = 263/390 (67%), Gaps = 1/390 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V SLYVGDL V D L++ F + + SVRVCRD T +SL YGYVN+ + +A RA
Sbjct: 10 VPASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ N + LNGK IR+M+S+ DP+ RKSG GN+F+KNL SIDN LHD F +GNILS
Sbjct: 70 MKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSS 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV G+S+GYGFVQF++EESA +AI+KLNG + DKQ++VG F+RK +R +
Sbjct: 130 KVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAK 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL TE L++ F FG I S + +D +G SK F FVN+++PDDA +++E
Sbjct: 190 YTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAME 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
A+NG KF K YV +AQKK ERE L +FE+ KE K++ NLYVKN+DD ++D +
Sbjct: 250 AMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKE 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++LFS GTITS KVMRD GIS+G GFV FS EEA+KA+ NG M KPLY+A+A
Sbjct: 310 LRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIA 369
Query: 398 QRKEERRARLQAQFSQMRPPV-GPRMPMYP 426
QRK +R+ +L ++ + + G P+ P
Sbjct: 370 QRKMDRKTQLNLHYAPQQTGLDGSSTPVIP 399
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +++LYV ++D V D +L DLF+ G + SV+V RD S G+G+V ++ EA
Sbjct: 290 KYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEAN 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ N + KP+ I + R
Sbjct: 349 KAVRSFNGCMFHRKPLYIAIAQR 371
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/323 (58%), Positives = 245/323 (75%), Gaps = 4/323 (1%)
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A RAL+ +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL DTFS FG
Sbjct: 133 DAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFG 192
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
NILSCKV D G S+GYGFV F+ ++A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 193 NILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 251
Query: 213 --ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
A F NVY+KN E + LK++FG+FG S VM D G SK FGFVNF+ +
Sbjct: 252 LGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHE 311
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA ++VE +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLD
Sbjct: 312 DAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLD 371
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +K
Sbjct: 372 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 430
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLY+ALAQRKEER+A L Q+ Q
Sbjct: 431 PLYIALAQRKEERQAHLTNQYMQ 453
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 164/290 (56%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ L+D F+ G ++S +V D S GYG+V++ A RA+D+
Sbjct: 169 NIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCD--EHGSKGYGFVHFETRDAAERAIDK 226
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+ L F FG
Sbjct: 227 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPA 286
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G S+G+GFV F+ E A+ A++++NG LN K+++VG +K ER++
Sbjct: 287 LSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELK 346
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 347 RKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 405
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K Y+ AQ+K ER+ L ++ Q +
Sbjct: 406 FVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQRM 455
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L LF + G +SV+V D S S G+G+VN+ +
Sbjct: 256 AKEF--TNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGT-SKGFGFVNFERHED 312
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A++E+N LNGK I + + + D R G N+++KNLD
Sbjct: 313 AQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGV-NLYVKNLD 371
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 372 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 430
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
+++ RK+ER++ N Y++ ++
Sbjct: 431 PLYIALAQRKEERQA-----HLTNQYMQRMA 456
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 220/468 (47%), Positives = 291/468 (62%), Gaps = 66/468 (14%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD- 214
SCKVA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S +
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 215 -KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDA 272
K F NVYVKNL T ++ +++F ++G ITS ++ RD + GKS+ FGFVNF + D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD-- 330
A +VE LN K++ ++ YVG+AQKK+ERE EL+ + E + E A K++G+NLYVKNL
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 331 -----------------------DSISD-----DKLKELFS------------EFGTITS 350
D+ISD +K KE E G S
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTISDAGSESEKEKEASKDNKENVKEETKKEAGGEDS 409
Query: 351 CKVM--------RDPN----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ + P G S+G GFV FS +EASKA+TEMN +MV KPLYVALAQ
Sbjct: 410 AEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 399 RKEERRARLQAQF--------SQMRPPVGPRMP-MYPPVAPGLGQQLF 437
RK+ R+++L+A Q+ G P M P V GQQ F
Sbjct: 470 RKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGF 517
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
PT + + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKNL+ +++++ +ELF ++G ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNE 271
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV F + A+ A+ ++N K + LYV AQ+K ER L+ Q R
Sbjct: 272 TGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 329
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/394 (49%), Positives = 262/394 (66%), Gaps = 1/394 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V S+YVGDL V + L+ F + G + SVRVCRD T SL YGYVN+ + +A RA
Sbjct: 10 VPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ N + LNGK IR+M+ +RDP RKSG GN+F+KNL SIDN LHD F +GNILS
Sbjct: 70 IKLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSS 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV G+S+GYGFVQF+ EESA +AI+KLNG + +KQ++VG F+RK +R +
Sbjct: 130 KVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAK 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL TE L++ F FG I S A+ +D +G SK F FVN+++PDDA +++E
Sbjct: 190 YTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAME 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
A+NG +F K YV +AQKK ERE L +FE+ KE K++ NLYVKN+DD ++D +
Sbjct: 250 AMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKE 309
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++LFS GTITS KVMRD GIS+G GFV FS EEA+KA+ NG KPLY+A+A
Sbjct: 310 LRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIA 369
Query: 398 QRKEERRARLQAQFSQMRPPV-GPRMPMYPPVAP 430
QRK+ER+ +L ++ + + G P+ P P
Sbjct: 370 QRKKERKTQLNLHYAPQQAGLDGSSTPVIPGGVP 403
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +++LYV ++D V D +L DLF+ G + SV+V RD S G+G+V ++ EA
Sbjct: 290 KYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEAN 348
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ N + KP+ I + R
Sbjct: 349 KAVMSFNGCTFHRKPLYIAIAQR 371
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/320 (59%), Positives = 244/320 (76%), Gaps = 4/320 (1%)
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNIL
Sbjct: 2 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 61
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 62 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 120
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 121 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 180
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 181 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 240
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP Y
Sbjct: 241 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFY 299
Query: 394 VALAQRKEERRARLQAQFSQ 413
VALAQRKEER+A L Q Q
Sbjct: 300 VALAQRKEERQAHLTNQHMQ 319
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 35 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 92
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 93 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 152
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 153 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 212
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 213 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 271
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K +YV AQ+K ER+ L + Q +
Sbjct: 272 FVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRM 321
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 109/195 (55%), Gaps = 22/195 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 122 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 178
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 179 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 237
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 238 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 296
Query: 197 QVFVGPFLRKQERES 211
+V RK+ER++
Sbjct: 297 PFYVALAQRKEERQA 311
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/344 (56%), Positives = 255/344 (74%), Gaps = 8/344 (2%)
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FG
Sbjct: 109 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 168
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
NILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 169 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 227
Query: 213 --ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
A F NVY+KN E ++ LK +FG+FG S V+ D GKSK FGFV+F+ +
Sbjct: 228 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHE 287
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLD
Sbjct: 288 DARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 347
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +K
Sbjct: 348 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 406
Query: 391 PLYVALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAP 430
PLYVALAQRKEER+A L Q+ Q +R P + Y P P
Sbjct: 407 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPP 450
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 145 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 202
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 203 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 262
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 263 LSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 322
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 323 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 381
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 382 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 431
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 232 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESG-KSKGFGFVSFERHED 288
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 289 ARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 347
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 348 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 406
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 407 PLYVALAQRKEERQA-----HLTNQYMQRMA 432
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/326 (58%), Positives = 247/326 (75%), Gaps = 5/326 (1%)
Query: 91 AH-EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
AH A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS
Sbjct: 61 AHGRAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKV D G S+GYGFV F+ +E+A+ +K+NGMLLND++VFVG F ++ER
Sbjct: 121 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 210 EST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
E+ A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+
Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFE 239
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVK
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 299
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 300 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQ 413
+KPLYVALAQRKEER+A L Q+ Q
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A R ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERVSEK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 187 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 302
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 362 PLYVALAQRKEERQA-----HLTNQYMQRMA 387
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/357 (53%), Positives = 253/357 (70%), Gaps = 12/357 (3%)
Query: 10 APVA---VAAQPSPATNGI---ANNGGVGDA--RQFVSTSLYVGDLDLSVNDSQLYDLFN 61
APV VAA +P NG A GDA Q S SLYVG+LD SV ++ LY+LF+
Sbjct: 9 APVTDNVVAA--APEANGAPVEATPEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFS 66
Query: 62 QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
+GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP
Sbjct: 67 SIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPA 126
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
+RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D S+GYGFV ++ E+A
Sbjct: 127 LRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAA 186
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIF 239
+AI +NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ T+D+ + +F
Sbjct: 187 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMF 246
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG ITS + D DGKS+ FGFVN+ + + A +V +N K+ ++ YVG+AQKK+E
Sbjct: 247 EAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKHE 306
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
RE EL+ ++E + E A K++G+NLYVKNL D I D+KL++LF+ +GTITS KVMRD
Sbjct: 307 REEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 163/320 (50%), Gaps = 19/320 (5%)
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
A E N P+ P + D + + ++++ LD S+ L++ FS+ G + S
Sbjct: 18 AAPEANGAPVEATP----EAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVAS 73
Query: 157 CKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
+V D++ + S GY +V ++N + A++ LN L+ K + +R+ K
Sbjct: 74 IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRK 129
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
T NV++KNL L F FG I S V +D SK +GFV+++ + A +
Sbjct: 130 TGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNA 189
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
++ +NG +DK+ +VG K +R+ KFE+ K N+Y+KN+D I+D
Sbjct: 190 IKHVNGMLLNDKKVFVGHHISKKDRQ----SKFEEM------KANFTNIYIKNIDLEITD 239
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+ + +F FG ITS + D +G SRG GFV ++ E A A+ EMN K V S+ LYV
Sbjct: 240 DEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVG 299
Query: 396 LAQRKEERRARLQAQFSQMR 415
AQ+K ER L+ Q+ R
Sbjct: 300 RAQKKHEREEELRKQYEAAR 319
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 52/287 (18%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ ++DL + D + +F G++ S + D + S G+G+VNY A A+
Sbjct: 226 TNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGK-SRGFGFVNYANHESAEAAVA 284
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
E+N + + + + + R+ +RK N+++KNL ID++
Sbjct: 285 EMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEK 344
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L D F+ +G I S KV D+ +S P
Sbjct: 345 LRDLFTPYGTITSAKVMRDAAERS--------------------------------PTPE 372
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFG 262
++E + V + +E TE KK E G T + A GKSK FG
Sbjct: 373 AEEKEAAKETKDSEEKEVKTEETAEVKTEAAEKKT--EEGEATEEKKTEKKAFGKSKGFG 430
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
FV F PD+A+++V +N + + K YV AQ+K R +L+ +
Sbjct: 431 FVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 477
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 57/93 (61%), Gaps = 11/93 (11%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R +
Sbjct: 424 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTI 482
Query: 419 G----------PRMPMYPPVAPGLGQQLFYGQG 441
P+ M P V G GQQ F G
Sbjct: 483 RQQQAAAAAGMPQPFMQPAVFYGAGQQGFMPPG 515
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/488 (43%), Positives = 294/488 (60%), Gaps = 89/488 (18%)
Query: 6 VQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
V+ Q A AA P+P T S SLYVG+LD SV ++ L++LF+Q+G
Sbjct: 36 VEAQGDNADAAGPTPTT----------APHPQASASLYVGELDPSVTEAMLFELFSQIGS 85
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
V S+R AL+ELN+T + G+P RIM+S RDP +RK+
Sbjct: 86 VASIR--------------------------ALEELNYTLIKGRPCRIMWSQRDPALRKT 119
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ +E+A AI
Sbjct: 120 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAI 179
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+NGMLLN+K+V+VG + K++R+S + K F NVYVKN++ T+D+ + +F FG
Sbjct: 180 KHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIANEVTDDEFRDLFAAFG 239
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+TS+++ RD +GKS+ FGFVNF + AA++VE LN K F ++ YVG+AQKK+ERE E
Sbjct: 240 DVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEE 299
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP------ 357
L+ +E + E A+K++G+NLY+KNLDD + D+KL+ LF++FG ITS KVMRD
Sbjct: 300 LRKSYEAARLEKANKYQGVNLYIKNLDDEVDDEKLRTLFADFGPITSAKVMRDTPTDSKE 359
Query: 358 --------------------------------------NGISRGSGFVAFSTAEEASKAL 379
+G S+G GFV FS ++A+KA+
Sbjct: 360 DEEGSSEEKEKENKPEAEEKTEEKEGSEKKEKKSDKKLHGKSKGFGFVCFSNPDDATKAV 419
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG------PRMPMYPPVAPGLG 433
EMN +MV KPLYVALAQRK+ R+++L+A Q R + P+ M PPV G
Sbjct: 420 AEMNQRMVHGKPLYVALAQRKDVRKSQLEASI-QARNQLAAAAAGLPQQYMQPPVFYAGG 478
Query: 434 QQLFYGQG 441
QQ + QG
Sbjct: 479 QQPVFPQG 486
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/439 (46%), Positives = 277/439 (63%), Gaps = 36/439 (8%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
+ + F S SLYVGDL V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +
Sbjct: 34 EGQLFPSASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVN 93
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A RAL+ L + + GK +RIM+S+RDP++RKSGAGN+FIKN+D+SID KAL+D FS +G
Sbjct: 94 DARRALEALKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYG 153
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
ILSCKVATD G+SRGYGFV FD E +A AI NGM L +K++FV PF+R+ ER S+
Sbjct: 154 QILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERVSS 213
Query: 213 AD-----KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+F N+YV+N E E+ LK+ F FG ITS + D G+ F F+N+
Sbjct: 214 TKLEDGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMMKSDPLGRK--FAFINYA 271
Query: 268 DPDDAARSVEALNGKKFDDK-----------------EWYVGKAQKKYEREMELKGKFEQ 310
+ A ++E +NGK F K + V Q + R LK K++
Sbjct: 272 ENSMAKAAIETMNGKDFSIKSGDKSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKYDS 331
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
E K++G+NLY+KNLDDSI+D +L+ELF FG ITSCKVM D +G S G GFV F
Sbjct: 332 MHAENKSKYQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFV 391
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS----------QMRPPVG- 419
+ E+A+ A++EM+ K+V +KPLYV LA+++E+R RLQ ++ M PP G
Sbjct: 392 SPEDATHAVSEMHLKLVHNKPLYVGLAEKREQRLNRLQMRYKVGHNRDGMPMGMLPPHGM 451
Query: 420 -PRMPMYPPVAPGLGQQLF 437
P M M P+ P GQ ++
Sbjct: 452 MPPMHMGVPMMPVNGQYMY 470
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/445 (44%), Positives = 280/445 (62%), Gaps = 15/445 (3%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
V + +APVAV + PA G N +LYVGDL SV + L ++F ++
Sbjct: 11 VAMAAEAPVAVEVEAVPAAAGGLN---------ATVPALYVGDLHESVREEHLLEVFGKI 61
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
G + SVRVCRD +T SL YGYVNY + +A AL++LN + + KPIR+M+S RDP R
Sbjct: 62 GTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDAR 121
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+SG GN+F+KNL+ +DN +L + F FG+ILSCKVA + G SRGYGFVQF +ESA +
Sbjct: 122 RSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADA 181
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+I LN +Q+ V F++K ER ST + ++ N+Y+KNL + TE+ +K F ++G
Sbjct: 182 SIQNLNNSHFCGRQLHVATFIKKSER-STNNDDKYTNLYMKNLDDDITEELIKLKFSQYG 240
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
++ S +M+ DG SK FGFV+F +P+ A R+ E++NG K YV +AQKK ER+
Sbjct: 241 LVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY 300
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
L+ E+ E K G N+Y+KN++D + DD L+E F+EFG ITS K+MRD GIS+G
Sbjct: 301 LQCLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKG 360
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMP 423
GFV ++T EEA A++ M G M KPLYVA+AQRKEERRA+L+ +F+++ VG P
Sbjct: 361 FGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSP 420
Query: 424 MYPPVAPGLGQQLFYGQGPPIIPPQ 448
+ P P FY P PQ
Sbjct: 421 VIPTGYPQ-----FYFAHPSTHLPQ 440
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/445 (44%), Positives = 280/445 (62%), Gaps = 15/445 (3%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
V + +APVAV + PA G N +LYVGDL SV + L ++F ++
Sbjct: 11 VAMAAEAPVAVEVEAVPAVAGGLNA---------TVPALYVGDLHESVREEHLLEVFGKI 61
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
G + SVRVCRD +T SL YGYVNY + +A AL++LN + + KPIR+M+S RDP R
Sbjct: 62 GTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDAR 121
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+SG GN+F+KNL+ +DN +L + F FG+ILSCKVA + G SRGYGFVQF +ESA +
Sbjct: 122 RSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADA 181
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+I LN +Q+ V F++K ER ST + ++ N+Y+KNL + TE+ +K F ++G
Sbjct: 182 SIQNLNNSHFCGRQLHVATFIKKSER-STNNDDKYTNLYMKNLDDDITEELIKLKFSQYG 240
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
++ S +M+ DG SK FGFV+F +P+ A R+ E++NG K YV +AQKK ER+
Sbjct: 241 LVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY 300
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
L+ E+ E K G N+Y+KN++D + DD L+E F+EFG ITS K+MRD GIS+G
Sbjct: 301 LQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKG 360
Query: 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMP 423
GFV ++T EEA A++ M G M KPLYVA+AQRKEERRA+L+ +F+++ VG P
Sbjct: 361 FGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSP 420
Query: 424 MYPPVAPGLGQQLFYGQGPPIIPPQ 448
+ P P FY P PQ
Sbjct: 421 VIPTGYPQ-----FYFAHPSTHLPQ 440
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/320 (56%), Positives = 250/320 (78%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYNA + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ TEDD +++F +FG +TS+++ RD +GKS+ FGFVNF + A+++V
Sbjct: 238 NFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + DD
Sbjct: 298 DDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+++FSEFG ITS KVMR+
Sbjct: 358 KLRQMFSEFGPITSAKVMRE 377
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 155/288 (53%), Gaps = 15/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ LD S+ L + FS G + S +V D++ + S GY +V ++ + A+++
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKALEE 119
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN L+ + + +R+ K NV++KNL L F FG I S
Sbjct: 120 LNYTLIKGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILS 175
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V +D +G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+ K
Sbjct: 176 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ----SK 231
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
FE+ K N+YVKN+ +++D +ELF +FG +TS + RD G SRG GFV
Sbjct: 232 FEEM------KANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFV 285
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
F+T E ASKA+ ++NGK + LYV AQ+K ER L+ + R
Sbjct: 286 NFTTHESASKAVDDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 68/239 (28%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++ V + +LF + G V S + RD +S G+G+VN+ A++A+D
Sbjct: 240 TNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARD-QEGKSRGFGFVNFTTHESASKAVD 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
+LN +G+ + + + R+ +RKS N++IKNLD +D+
Sbjct: 299 DLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDK 358
Query: 144 LHDTFSTFGNILSCKVATDS---------------------------------------- 163
L FS FG I S KV ++
Sbjct: 359 LRQMFSEFGPITSAKVMRETPTEGDEDKKEETQDDKEKENKEEAKEEANEETKEGEEAKD 418
Query: 164 -----------LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
LG+S+G+GFV F N + A A+ ++N ++N+K ++V RK R+S
Sbjct: 419 DKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKS 477
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 13/102 (12%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
G S+G GFV FS ++A+KA+ EMN +M+ +KPLYVALAQRK+ R+++L+A +Q+R
Sbjct: 431 GKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQARNQLR 490
Query: 416 PPVG------PRMPMYPPVAPGLGQQLFY----GQGPPIIPP 447
P+ M PPV GQQ + G+G P P
Sbjct: 491 MQQAAAAAGMPQQYMQPPVYFAPGQQPGFMPQGGRGVPFPQP 532
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/344 (53%), Positives = 247/344 (71%), Gaps = 7/344 (2%)
Query: 20 PATNGI---ANNGGVGDA--RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
P NG A + GDA Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 20 PEANGAPVEATSEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 79
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKN
Sbjct: 80 AVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKN 139
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD +IDNKALHDTF+ FGNILSCKVA D S+GYGFV ++ E+A +AI +NGMLLN
Sbjct: 140 LDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLN 199
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
DK+VFVG + K++R+S + K F N+Y+KN+ T+D+ + +F FG ITS +
Sbjct: 200 DKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSH 259
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D DGKS+ FGFVN+ + + A +V +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 260 DQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAAR 319
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
E A K++G+NLYVKNL D I D+KL++LF+ +GTITS KVMRD
Sbjct: 320 MEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 161/311 (51%), Gaps = 16/311 (5%)
Query: 107 NGKPIRIMY-SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG 165
NG P+ + D + + ++++ LD S+ L++ FS+ G + S +V D++
Sbjct: 23 NGAPVEATSEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 82
Query: 166 Q-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224
+ S GY +V ++N + A++ LN L+ K + +R+ KT NV++K
Sbjct: 83 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIK 138
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NL L F FG I S V +D SK +GFV+++ + A +++ +NG
Sbjct: 139 NLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
+DK+ +VG K +R+ KFE+ K N+Y+KN+D I+DD+ + +F
Sbjct: 199 NDKKVFVGHHISKKDRQ----SKFEEM------KANFTNIYIKNIDLEITDDEFRVMFEA 248
Query: 345 FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
FG ITS + D +G SRG GFV ++ E A A+ EMN K V ++ LYV AQ+K ER
Sbjct: 249 FGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHERE 308
Query: 405 ARLQAQFSQMR 415
L+ Q+ R
Sbjct: 309 EELRKQYEAAR 319
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 58/93 (62%), Gaps = 11/93 (11%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+G GFV FS+ +EASKA+TEMN +MV +KPLYVALAQRK+ RR++L+A Q R +
Sbjct: 423 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKDVRRSQLEASI-QARNTI 481
Query: 419 G----------PRMPMYPPVAPGLGQQLFYGQG 441
P+ M P V G GQQ F G
Sbjct: 482 RQQQAAAAAGMPQPFMQPAVFYGAGQQGFMPPG 514
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/339 (56%), Positives = 248/339 (73%), Gaps = 5/339 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG++G S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K YVG+A KK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
I D++L++ FS FGTITS KVM + G S+G GFV FS
Sbjct: 303 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFS 340
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 168/298 (56%), Gaps = 17/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R+++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + + E N+Y+KN + + D++LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAK----------EFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ +MNGK + K +YV A +K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMK 283
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/417 (47%), Positives = 266/417 (63%), Gaps = 16/417 (3%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDL V + L++ F+++G V SVRVCRD +T RSL YGYVNY + +A ALD+L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N + + KPIR+M+S RDP R+SG GNIF+KNL S+DN +L + FS FG++LSCKVA
Sbjct: 183 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAK 242
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
+ G SRGYGFVQF ++ESA AI LNG L ND+++ V F++K ER + D +F N+
Sbjct: 243 NEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDD-KFTNL 301
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
Y+K+L + TE+ +K F +FG I S +M+ DG S FGFV+F +P+ A ++ +NG
Sbjct: 302 YMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNG 361
Query: 282 KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKEL 341
K YV +AQKK ER+ L+ E+ E + N+Y+KN+ D + DD L+
Sbjct: 362 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRAR 421
Query: 342 FSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
F EFG ITS KVMRD GISRG GFV +ST EEA A+ M G M KPLYVA+ QRKE
Sbjct: 422 FVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKE 481
Query: 402 ERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYG-------QGPP----IIPP 447
ER+A+LQ F+Q+ VGP M P P Q+++ QGPP + PP
Sbjct: 482 ERKAKLQQHFAQLARMVGPANSMIPTGYP----QVYFAHPSTHIPQGPPRHGFVYPP 534
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/459 (44%), Positives = 284/459 (61%), Gaps = 61/459 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A +P + A+N S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVPAAQGEVSTPTSAAPAHNQN--------SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ +++D + +F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + A+ +V+ALN F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNL-----DDSISD---------------DKLKEL 341
EL+ ++E + E K++G+NLY+KNL D+ + D D +
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAA 371
Query: 342 FSEFGTI-------------------------------TSCKVMRDPNGISRGSGFVAFS 370
SE T + K + G S+G GFV FS
Sbjct: 372 GSEDATDEKKDESKEESEEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFS 431
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
+EA+KA+TEMN KM+ +KPLYVALAQRK+ R+ +L+A
Sbjct: 432 NPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEA 470
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 151/290 (52%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ E + A+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ K + +R+ KT NV++KNL L F FG I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D +SD+ ++LF + G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFG 272
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 161/346 (46%), Gaps = 74/346 (21%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 131 RKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAA 189
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIR--------KSGAGNIFIKNLDKSIDNKALHD 146
A+ +N LN K ++ + P K+ NI++KN+D + ++ D
Sbjct: 190 NNAIKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRD 247
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
F G+I S +A D G+SRG+GFV + E+A +A+D LN ++++VG +K
Sbjct: 248 LFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKK 307
Query: 207 QERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
ERE K +++ N+Y+KNL++ ++ L+ +F FG ITS VMRDA
Sbjct: 308 HEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDA 367
Query: 255 ---------------------------------------------DGKSKC------FGF 263
G+ K FGF
Sbjct: 368 MPAAGSEDATDEKKDESKEESEEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGF 427
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V F +PD+A ++V +N K ++K YV AQ+K R+ +L+ +
Sbjct: 428 VCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEATIQ 473
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/434 (46%), Positives = 275/434 (63%), Gaps = 63/434 (14%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 117 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 177 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 237 NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 297 VEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 336 DKLKELFSEFGTITSCKVMRDP----------------------NGISRGSGFVAFSTAE 373
+KL+ELFS +G ITS KVMR+ G A S +E
Sbjct: 357 EKLRELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESE 416
Query: 374 EASKALTEMNGKMVVSKP--------------------------------------LYVA 395
+ SK+ + GK +KP LYVA
Sbjct: 417 DKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVA 476
Query: 396 LAQRKEERRARLQA 409
LAQRK+ R+++L+A
Sbjct: 477 LAQRKDVRKSQLEA 490
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 47/286 (16%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++ V D + LF + G++ S + RD T +S G+G+VN++ A+ A++
Sbjct: 239 TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN L G+ + + + R+ +RK N++IKNL ID++
Sbjct: 299 ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 358
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS++GNI S KV +++ + E K A + DK G
Sbjct: 359 LRELFSSYGNITSAKVMREAIVDAP-------AEAEKDKEADKEKAKKEAGDKSEEKG-- 409
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+ + + DK++ SE TE G S + GKSK FGF
Sbjct: 410 ---EAKSESEDKSK---------SEEKTE----------GKTESAKPEKKHLGKSKGFGF 447
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V F +PD+A+++V +N + K YV AQ+K R+ +L+ +
Sbjct: 448 VCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQ 493
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/369 (51%), Positives = 269/369 (72%), Gaps = 2/369 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LYVGDLD V++ +L D+F+ MG +VSVR+CRD + +SL Y YVN+ +A++AL
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALA 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN T L GKP+RIM+S+RDP RK+G N+F+KNLD SI++ +L D F FGNILSCKV
Sbjct: 89 CLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKV 148
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A ++ G+S+ +GFVQFD+++SA +A++ LN +L+ K++FV F++K ER+ +++T+F
Sbjct: 149 AEEN-GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFT 207
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL E TED ++ F EFG + + +M+D +GKS+ FGFVNF+ PD+A ++VEAL
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG K+ +VG+AQKK ER+ LK + E + K + NLYVKNLD S+ DDKL+
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQ 326
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E FS G ITS KVMR +G+S+G GFV FST+EEA KALT +NG ++ + LY+A+AQR
Sbjct: 327 EHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQR 386
Query: 400 KEERRARLQ 408
KE+R+ L+
Sbjct: 387 KEDRQRVLR 395
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 160/291 (54%), Gaps = 18/291 (6%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
+++ +LD + L D FS G ++S ++ DSL G+S Y +V F + A A+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N L K + + R+ KT N++VKNL + L+ IF +FG I S
Sbjct: 91 NHTKLMGKPMRI----MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSC 146
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V + +GKSKCFGFV FD D A ++ ALN D K+ +V K KK ER
Sbjct: 147 KVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER-------- 197
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
KE +++ + N+YVKNL + +++D +++ FSEFG + + +M+D NG SRG GFV
Sbjct: 198 ----KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVN 253
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG 419
F + +EA KA+ +NG M+ SK L+V AQ+K ER+ L+ + + +G
Sbjct: 254 FESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIG 304
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 31/303 (10%)
Query: 18 PSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
P P G+AN L+V +LD S+N + L D+F + G ++S +V +
Sbjct: 109 PLPRKTGLAN--------------LFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--N 152
Query: 78 RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIK 133
+S +G+V +++ AT AL+ LN T L+GK + + R ++ N+++K
Sbjct: 153 GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVK 212
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NL + + + D FS FG + + + D G+SRG+GFV F++ + AK A++ LNG +L
Sbjct: 213 NLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAML 272
Query: 194 NDKQVFVGPFLRKQERE-----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
K++FVG +K ER+ K + +N+YVKNL + +D L++ F
Sbjct: 273 GSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSC 332
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G ITS VMR G SK FGFV F ++A +++ LNG + Y+ AQ+K +R+
Sbjct: 333 GQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
Query: 303 ELK 305
L+
Sbjct: 393 VLR 395
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/320 (55%), Positives = 241/320 (75%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN+A++ RAL
Sbjct: 55 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 114
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 115 EELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCK 174
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A SAI +NGMLLN+K+VFVG + K++R S + K
Sbjct: 175 VAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 234
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ T+D+ + +F ++G ITS ++ D +GKS+ FGFVN+ +DA ++V
Sbjct: 235 NFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAV 294
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN F + YVG+AQKK+ERE EL+ ++E +E + K++G+NLYVKNL D I DD
Sbjct: 295 EELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDD 354
Query: 337 KLKELFSEFGTITSCKVMRD 356
+L+++F +G ITS KVMRD
Sbjct: 355 ELRKIFEPYGAITSAKVMRD 374
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 155/297 (52%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++
Sbjct: 48 PSNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 107
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A+++LN L+ K + +R+ KT NV++KNL L
Sbjct: 108 NDGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 163
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++++NG ++K+ +VG K
Sbjct: 164 FAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKK 223
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R KFE+ K N+YVKN+D +DD+ + LF ++G ITS + D
Sbjct: 224 DR----MSKFEEM------KANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQE 273
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV + E+A+KA+ E+N + LYV AQ+K ER L+ Q+ R
Sbjct: 274 GKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQR 330
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/321 (55%), Positives = 243/321 (75%), Gaps = 3/321 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 73 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 132
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 133 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 192
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 193 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 252
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 253 NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 312
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 313 VEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 372
Query: 336 DKLKELFSEFGTITSCKVMRD 356
+KL+ELFS +G ITS KVMR+
Sbjct: 373 EKLRELFSSYGNITSAKVMRE 393
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 200/392 (51%), Gaps = 63/392 (16%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 157 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAA 215
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
T A+ +N LN K + + + + +D + K+ NI++KN+++ + ++ F
Sbjct: 216 TNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLF 275
Query: 149 STFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
+G I S ++ D+ G+SRG+GFV F + E+A +A++ LN L ++++VG +K
Sbjct: 276 EKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 335
Query: 208 ERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
ERE A K + N+Y+KNLS+ ++ L+++F +G ITS VMR
Sbjct: 336 EREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMR--- 392
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
+A V A E E + + E++ KET
Sbjct: 393 ---------------EAIVDVPA--------------------ETEKDKEADKEKAKKET 417
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
DK E K S S+DK K G S K + G S+G GFV FS +EA
Sbjct: 418 GDKSE-----EKGESKSESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEA 472
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
SKA+TEMN +MV KPLYVALAQRK+ R++++
Sbjct: 473 SKAVTEMNQRMVHGKPLYVALAQRKDVRKSQV 504
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 66 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 125
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 126 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 181
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 182 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 241
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 242 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 291
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 292 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAAR 349
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 47/284 (16%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++ V D + LF + G++ S + RD T +S G+G+VN++ A+ A++
Sbjct: 255 TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 314
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN L G+ + + + R+ +RK N++IKNL ID++
Sbjct: 315 ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 374
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS++GNI S KV +++ V E DK
Sbjct: 375 LRELFSSYGNITSAKVMREAI--------VDVPAETEKDKEADK---------------- 410
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
++ ++ T DK+ K S++ +ED K G S + GKSK FGF
Sbjct: 411 --EKAKKETGDKSE-----EKGESKSESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGF 463
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V F +PD+A+++V +N + K YV AQ+K R+ ++ K
Sbjct: 464 VCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQVSTK 507
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 254/365 (69%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL +V+D+ L D F+ + SVRVC+D ST +SL YGYVN+ + +A RA++
Sbjct: 12 ASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIE 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N + LNGK +R+M+S RDP RK+ GN+F+KNL +SIDN L D F +GNILS KV
Sbjct: 72 LKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
G+S+GYGFVQF++EES+ AI+KLNG + DKQ++VG F++K +R R+
Sbjct: 132 VMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYT 191
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL +E L++ F FG I S + +D G SK FGFVN+D+PDDA R++EA+
Sbjct: 192 NLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAM 251
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG K K YV +AQKK ERE L +FE+ KE K++G N+YVKN+DD +SD++L+
Sbjct: 252 NGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELR 311
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS G ITS K+MRD GIS+G GFV FST EEA+KA+ +G M KPLYVALAQR
Sbjct: 312 DHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
Query: 400 KEERR 404
KE+R+
Sbjct: 372 KEDRK 376
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 158/297 (53%), Gaps = 17/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNE 178
P + ++++ +L ++ + L D FS F ++ S +V DS G+S YG+V F +
Sbjct: 4 PPSVAAAPASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSP 63
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A AI+ N LN K + V R+ A K N++VKNL E+ L+ +
Sbjct: 64 QDAIRAIELKNNSTLNGKAMRV----MWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDM 119
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F ++G I S+ V+ DGKSK +GFV F+ + + ++E LNG DK+ YVGK KK
Sbjct: 120 FKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKS 179
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R + NLY+KNLD +S+ L+E FS FG I S + +D
Sbjct: 180 DRIL------------PGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNI 227
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G+S+G GFV + ++A +A+ MNG + SK LYVA AQ+K ER L QF + R
Sbjct: 228 GMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKR 284
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 160/290 (55%), Gaps = 27/290 (9%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +L+V +L S++++ L D+F + G ++S +V +S GYG+V + +
Sbjct: 93 DARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMS-EDGKSKGYGFVQFESEE 151
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA---------GNIFIKNLDKSIDNKA 143
+ A+++LN + + K + Y ++KS N+++KNLD +
Sbjct: 152 SSNVAIEKLNGSTVGDKQL-----YVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEAT 206
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS+FG I+S +A D++G S+G+GFV +DN + AK A++ +NG L K ++V
Sbjct: 207 LQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARA 266
Query: 204 LRKQERESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
+K ERE K + +N+YVKN+ + ++++L+ F GIITS +M
Sbjct: 267 QKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIM 326
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
RD G SK FGFV F P++A ++V +G F K YV AQ+K +R+
Sbjct: 327 RDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRK 376
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/321 (55%), Positives = 243/321 (75%), Gaps = 3/321 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 117 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 177 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 237 NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 297 VEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 336 DKLKELFSEFGTITSCKVMRD 356
+KL+ELFS +G ITS KVMR+
Sbjct: 357 EKLRELFSSYGNITSAKVMRE 377
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 203/392 (51%), Gaps = 63/392 (16%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 141 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAA 199
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
T A+ +N LN K + + + + +D + K+ NI++KN+++ + ++ F
Sbjct: 200 TNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLF 259
Query: 149 STFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
+G I S ++ D+ G+SRG+GFV F + E+A +A++ LN L ++++VG +K
Sbjct: 260 EKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
Query: 208 ERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
ERE A K + N+Y+KNLS+ ++ L+++F +G ITS VMR+A
Sbjct: 320 EREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREA- 378
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
V D A + + K K+ K+++K E S E+
Sbjct: 379 -------IV-----DVPAETEKDKEADKEKAKKEGGDKSEEKGE-----------SKSES 415
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
DK S S++K + G S K + G S+G GFV FS +EA
Sbjct: 416 EDK-------------SKSEEKTE------GKTESTKPEKKHLGKSKGFGFVCFSNPDEA 456
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
SKA+TEMN +MV KPLYVALAQRK+ R++++
Sbjct: 457 SKAVTEMNQRMVHGKPLYVALAQRKDVRKSQV 488
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 49/285 (17%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++ V D + LF + G++ S + RD T +S G+G+VN++ A+ A++
Sbjct: 239 TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN L G+ + + + R+ +RK N++IKNL ID++
Sbjct: 299 ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 358
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGP 202
L + FS++GNI S KV +++ V E DK DK G
Sbjct: 359 LRELFSSYGNITSAKVMREAI--------VDVPAETEKDKEADKEKAKKEGGDKSEEKG- 409
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ + + DK++ SE TE G ST + GKSK FG
Sbjct: 410 ----ESKSESEDKSK---------SEEKTE----------GKTESTKPEKKHLGKSKGFG 446
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
FV F +PD+A+++V +N + K YV AQ+K R+ ++ K
Sbjct: 447 FVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQVSTK 491
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 35/196 (17%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ +LY+ +L ++D +L +LF+ G + S +V R+ V+ A E
Sbjct: 337 ASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE---------AIVDVPAETE 387
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
+ D+ G D + K G ++ DKS + T G
Sbjct: 388 KDKEADKEKAKKEGG----------DKSEEK---GESKSESEDKSKSEE------KTEGK 428
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
S K LG+S+G+GFV F N + A A+ ++N +++ K ++V RK R+S
Sbjct: 429 TESTKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQV 488
Query: 214 D-------KTRFNNVY 222
+++F N+Y
Sbjct: 489 STKVIHLIRSQFTNIY 504
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/427 (49%), Positives = 286/427 (66%), Gaps = 19/427 (4%)
Query: 13 AVAAQPSPATNGI---ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
A +A P P NG+ N G F S SLYVG+L V ++ LY++FN +G V S+
Sbjct: 7 AGSAAPRP-INGVLPVGNYQGQPARSSFNSASLYVGNLLPEVTEAMLYEVFNGIGPVASI 65
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TR+SLGY YVNY +A AL+ LN+ + G+P RIM+S RDP++RKSG GN
Sbjct: 66 RVCRDSLTRKSLGYAYVNYYNFQDAEAALECLNYIEIKGQPARIMWSERDPSLRKSGTGN 125
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IF+KNLDK+ID KAL+DTFS FG ILSCKVA DSLG S+GYGFV + EESAK AI+K+N
Sbjct: 126 IFVKNLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVN 185
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML+ + QV V PFLR+ ER ST F N+YV+N +T TEDDL + F ++G ITS
Sbjct: 186 GMLIGNSQVSVAPFLRRNERTSTVGDV-FTNLYVRNFPDTWTEDDLHQTFSKYGEITS-- 242
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE--WYVGKAQKKYEREMELKGK 307
++ +D K + F FVNF D + A ++E NG KF+ E V + K R LK +
Sbjct: 243 LLLKSDDKGRRFAFVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQHMDKARRYAMLKAQ 302
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
++ + ++ +KF G+NLY+KNLDD DD L++LF ++GT+TS KVMRD NG+SRG GFV
Sbjct: 303 YDSNAQDQRNKFMGVNLYIKNLDDDFDDDGLRDLFKQYGTVTSSKVMRDHNGVSRGFGFV 362
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM-------RPPVGP 420
FS +EA+KA+ M+ K+V +KPLYV LA+++E+R +R+Q + Q RP
Sbjct: 363 CFSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQRASRMQQRNRQNDMMQYGDRPGY-- 420
Query: 421 RMPMYPP 427
+P+YPP
Sbjct: 421 -VPLYPP 426
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 267/365 (73%), Gaps = 2/365 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LYVGDLD V++ +L D+F+ MG +VSVR+CRD + +SL Y YVN+ +A++AL
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALA 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN T L GKP+RIM+S+RDP RK+G N+F+KNLD SI++ +L D F FGNILSCKV
Sbjct: 89 CLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKV 148
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A ++ G+S+ +GFVQFD+++SA +A++ LN +L+ K++FV F++K ER+ +++T+F
Sbjct: 149 AEEN-GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFT 207
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL E TED ++ F EFG + + +M+D +GKS+ FGFVNF+ PD+A ++VEAL
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG K+ +VG+AQKK ER+ LK + E + K + NLYVKNLD S+ DDKL+
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQ 326
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E FS G ITS KVMR +G+S+G GFV FST+EEA KALT +NG ++ + LY+A+AQR
Sbjct: 327 EHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQR 386
Query: 400 KEERR 404
KE+R+
Sbjct: 387 KEDRQ 391
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 159/291 (54%), Gaps = 18/291 (6%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
+++ +LD + L D FS G ++S ++ DSL G+S Y +V F A A+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALACL 90
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N L K + + R+ KT N++VKNL + L+ IF +FG I S
Sbjct: 91 NHTKLMGKPMRI----MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSC 146
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V + +GKSKCFGFV FD D A ++ ALN D K+ +V K KK ER
Sbjct: 147 KVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER-------- 197
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
KE +++ + N+YVKNL + +++D +++ FSEFG + + +M+D NG SRG GFV
Sbjct: 198 ----KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVN 253
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG 419
F + +EA KA+ +NG M+ SK L+V AQ+K ER+ L+ + + +G
Sbjct: 254 FESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIG 304
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/321 (55%), Positives = 243/321 (75%), Gaps = 3/321 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 117 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 177 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 237 NFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 297 VEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 336 DKLKELFSEFGTITSCKVMRD 356
+KL+ELFS +G ITS KVMR+
Sbjct: 357 EKLRELFSSYGNITSAKVMRE 377
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 132/233 (56%), Gaps = 20/233 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A AT A+
Sbjct: 147 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKH 205
Query: 101 LNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + + +D + K+ NI++KN+++ + ++ F +G I
Sbjct: 206 VNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEI 265
Query: 155 LSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-- 211
S ++ D+ G+SRG+GFV F + E+A +A++ LN L ++++VG +K ERE
Sbjct: 266 TSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEEL 325
Query: 212 ----------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
A K + N+Y+KNLS+ ++ L+++F +G ITS VMR+A
Sbjct: 326 RKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREA 378
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 131/282 (46%), Gaps = 47/282 (16%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++ V D + LF + G++ S + RD T +S G+G+VN++ A+ A++
Sbjct: 239 TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN L G+ + + + R+ +RK N++IKNL ID++
Sbjct: 299 ALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 358
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS++GNI S KV +++ + E K A + DK G
Sbjct: 359 LRELFSSYGNITSAKVMREAIVDAP-------AEAEKDKEADKEKAKKEAGDKSEEKG-- 409
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+ + + DK++ SE TE G S + GKSK FGF
Sbjct: 410 ---EAKSESEDKSK---------SEEKTE----------GKTESAKPEKKHLGKSKGFGF 447
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
V F +PD+A+++V +N + K YV AQ+K R+ +L+
Sbjct: 448 VCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLE 489
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
T G S K LG+S+G+GFV F N + A A+ ++N +++ K ++V RK R
Sbjct: 425 TEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVR 484
Query: 210 ESTADKTRFNN 220
+S + N+
Sbjct: 485 KSQLETPSANS 495
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/369 (51%), Positives = 269/369 (72%), Gaps = 2/369 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LYVGDLD V++ +L D+F+ MG +VSVR+CRD + +SL Y YVN+ +A++AL
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALA 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN T L GKP+RIM+S+RDP RK+G N+F+KNLD SI++ +L D F FGNILSCKV
Sbjct: 89 CLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKV 148
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
A ++ G+S+ +GFVQFD+++SA +A++ LN +L+ K++FV F++K ER+ +++T+F
Sbjct: 149 AEEN-GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFT 207
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL E TED ++ F EFG + + +M+D +GKS+ FGFVNF+ PD+A ++VEAL
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG K+ +VG+AQKK ER+ LK + E + K + NLYVKNLD S+ DDKL+
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQ 326
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E FS G ITS KVMR +G+S+G GFV FST+EEA KALT +NG ++ + LY+A+AQR
Sbjct: 327 EHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQR 386
Query: 400 KEERRARLQ 408
KE+R+ L+
Sbjct: 387 KEDRQRVLR 395
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 160/291 (54%), Gaps = 18/291 (6%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
+++ +LD + L D FS G ++S ++ DSL G+S Y +V F + A A+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N L K + + R+ KT N++VKNL + L+ IF +FG I S
Sbjct: 91 NHTKLMGKPMRI----MWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSC 146
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V + +GKSKCFGFV FD D A ++ ALN D K+ +V K KK ER
Sbjct: 147 KVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER-------- 197
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
KE +++ + N+YVKNL + +++D +++ FSEFG + + +M+D NG SRG GFV
Sbjct: 198 ----KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVN 253
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG 419
F + +EA KA+ +NG M+ SK L+V AQ+K ER+ L+ + + +G
Sbjct: 254 FESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIG 304
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 31/303 (10%)
Query: 18 PSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
P P G+AN L+V +LD S+N + L D+F + G ++S +V +
Sbjct: 109 PLPRKTGLAN--------------LFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--N 152
Query: 78 RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI----MYSYRDPTIRKSGAGNIFIK 133
+S +G+V +++ AT AL+ LN T L+GK + + R ++ N+++K
Sbjct: 153 GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVK 212
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NL + + + D FS FG + + + D G+SRG+GFV F++ + AK A++ LNG +L
Sbjct: 213 NLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAML 272
Query: 194 NDKQVFVGPFLRKQERE-----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
K++FVG +K ER+ K + +N+YVKNL + +D L++ F
Sbjct: 273 GSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSC 332
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G ITS VMR G SK FGFV F ++A +++ LNG + Y+ AQ+K +R+
Sbjct: 333 GQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
Query: 303 ELK 305
L+
Sbjct: 393 VLR 395
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/338 (53%), Positives = 246/338 (72%), Gaps = 2/338 (0%)
Query: 21 ATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS 80
AT G A S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRS
Sbjct: 28 ATQGEAPTPTTAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRS 87
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +ID
Sbjct: 88 LGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAID 147
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
NKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFV
Sbjct: 148 NKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV 207
Query: 201 GPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
G + K+ER S + K F N+YVKN+ T+D+ + +F + G ITS ++ RD GKS
Sbjct: 208 GHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKS 267
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
+ FGFVN+ + A+ +VE LN +F ++ YVG+AQKK+ERE EL+ ++E + E K
Sbjct: 268 RGFGFVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSK 327
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
++G+NLY+KNL+D + D+KL+++F+ FGTITS KVMRD
Sbjct: 328 YQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 365
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 152/290 (52%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++ E + A+
Sbjct: 46 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 105
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ K + +R+ KT NV++KNL L F FG I
Sbjct: 106 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 161
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K ER
Sbjct: 162 LSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 217
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+D ++DD+ ++LF + G ITS + RD G SRG G
Sbjct: 218 SKFEEM------KANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFG 271
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV + E AS A+ +N + LYV AQ+K ER L+ Q+ R
Sbjct: 272 FVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAAR 321
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 7/116 (6%)
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+DDK ++ ++ G + K + G S+G GFV FS +EA+KA+TEMN KM+ KPLY
Sbjct: 401 TDDKKED--TKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLY 458
Query: 394 VALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFY--GQGPPIIPP 447
VALAQRK+ R+ +L+A Q R + RM G Q+F GQ P + PP
Sbjct: 459 VALAQRKDVRKNQLEATI-QARNQL--RMQQQQQQQFGGIPQMFIAPGQQPMMFPP 511
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/315 (59%), Positives = 242/315 (76%), Gaps = 4/315 (1%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 299 RKEERQAHLTNQYMQ 313
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 315
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 116 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 172
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 231
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 232 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 290
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 291 PLYVALAQRKEERQA-----HLTNQYMQRMA 316
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/315 (59%), Positives = 242/315 (76%), Gaps = 4/315 (1%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 299 RKEERQAHLTNQYMQ 313
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 315
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 116 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 172
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 231
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 232 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 290
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 291 PLYVALAQRKEERQA-----HLTNQYMQRMA 316
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 242/321 (75%), Gaps = 3/321 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 57 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 117 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLN+K+VFVG + K++R+S + K
Sbjct: 177 VAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKA 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F N+YVKN+ + T+++ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +
Sbjct: 237 NFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAA 296
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN + ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 297 VEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 356
Query: 336 DKLKELFSEFGTITSCKVMRD 356
+KL+ELFS +G ITS KVMR+
Sbjct: 357 EKLRELFSSYGNITSAKVMRE 377
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 16/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ + + +R+ KT NV++KNL L
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R+ KFE+ K N+YVKN++ ++D++ + LF ++G ITS + RD
Sbjct: 226 DRQ----SKFEEM------KANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNE 275
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FS E AS A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 276 TGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 45/286 (15%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++ V D + LF + G++ S + RD T +S G+G+VN++ A+ A++
Sbjct: 239 TNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN L G+ + + + R+ +RK N++IKNL ID++
Sbjct: 299 GLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 358
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS++GNI S KV +++ ++E+ K K G DK
Sbjct: 359 LRELFSSYGNITSAKVMREAISD---VPADAEKDKEADKEKAKKETGDKPEDK------- 408
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+ E + DK++ SE TE G + GKSK FGF
Sbjct: 409 AETKSDEKSEDKSK---------SEEKTE----------GKTDGAKTEKKHLGKSKGFGF 449
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V F +PD+A+++V +N + K YV AQ+K R+ +L+ +
Sbjct: 450 VCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQ 495
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D S+DK K G K + G S+G GFV FS +EASKA+TEMN +MV K
Sbjct: 414 DEKSEDKSKSEEKTEGKTDGAKTEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGK 473
Query: 391 PLYVALAQRKEERRARLQA 409
PLYVALAQRK+ R+++L+A
Sbjct: 474 PLYVALAQRKDVRKSQLEA 492
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/320 (55%), Positives = 248/320 (77%), Gaps = 2/320 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYNA + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ TEDD +++F ++G +TS+++ RD +GKS+ FGFVNF + A ++V
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ LN K F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNLDD + DD
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 337 KLKELFSEFGTITSCKVMRD 356
KL+E+F +FG+ITS KVMR+
Sbjct: 358 KLREMFKDFGSITSAKVMRE 377
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 154/290 (53%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G + S +V D++ + S GY +V ++ + A+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN ++ + + +R+ KT NV++KNL L F FG I
Sbjct: 118 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 229
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+ +++D ++LF ++G +TS + RD G SRG G
Sbjct: 230 SKFEEM------KANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFG 283
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV F+T E A KA+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 284 FVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 54/286 (18%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++ V + LF + G V S + RD + S G+G+VN+ A +A+D
Sbjct: 240 TNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGK-SRGFGFVNFTTHESAFKAVD 298
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
ELN +G+ + + + R+ +RKS N++IKNLD +D+
Sbjct: 299 ELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDK 358
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F FG+I S KV ++ + D ++ K DK N Q V
Sbjct: 359 LREMFKDFGSITSAKVMRETP--------TEGDEDKKEKDESDKEN-------QEEVKEE 403
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
++++ +E + D+T+ E+D K + GKSK FGF
Sbjct: 404 VKEESKEESKDETK------------EGEEDKKAEKKSDKKL----------GKSKGFGF 441
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V F +PDDA ++V +N + F+ K YV AQ+K R+ +L+ +
Sbjct: 442 VCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQ 487
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
G S+G GFV FS ++A+KA+ EMN +M KPLYVALAQRK+ R+++L+A +Q+R
Sbjct: 434 GKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQLR 493
Query: 416 PPVG------PRMPMYPPVAPGLGQQLFY----GQGPPI 444
P+ M PPV GQQ Y G+G P
Sbjct: 494 MQQAAAVAGMPQQYMQPPVYFAPGQQPGYMPQGGRGVPF 532
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/395 (54%), Positives = 276/395 (69%), Gaps = 28/395 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+ RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVI--RVCRDVITRRSLGYAYVNFQQPADAERALDT 60
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + KPIRIM+S RDP++R+SG GN+FIKNLD++ NKA++DTFS FGNILSCKVA
Sbjct: 61 MNL--VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRA--NKAIYDTFSAFGNILSCKVA 116
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD G S+GYGFV EE+A ++IDK+NGMLLN K+V+VG F+ ++E+E A F N
Sbjct: 117 TDEKGNSKGYGFVH--TEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQEEKAK--LFTN 172
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VYVKN +E ++ LK+ F +G IT VM DGKSK FGFV F+ + A +V+ALN
Sbjct: 173 VYVKNFTEDFDDEKLKEFFEPYGKITK--VMSKEDGKSKGFGFVAFETTEAAEAAVQALN 230
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YV +AQKK ER+ ELK KFE+ LK+ +F G+NLYVKNLDD+I DD+L+
Sbjct: 231 GKG-EGKSLYVARAQKKAERQQELKRKFEE-LKQKRHEF-GVNLYVKNLDDTIDDDRLRI 287
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS +G ITS KV D G S+G GFV F+ EA+ A+TE+NG++V S LYVALAQRK
Sbjct: 288 AFSPYGNITSAKV--DEEGRSKGFGFVCFNPESEATCAVTELNGRVVGS--LYVALAQRK 343
Query: 401 EERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQ 435
EER+A L +Q+ MR G RM LGQQ
Sbjct: 344 EERKADLASQY--MRHMTGMRMQQ-------LGQQ 369
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R +LYV +LD +++D +L F+ G + S +V + RS G+G+V +N EA
Sbjct: 264 RHEFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVDEE---GRSKGFGFVCFNPESEA 320
Query: 95 TRALDELN 102
T A+ ELN
Sbjct: 321 TCAVTELN 328
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/357 (51%), Positives = 254/357 (71%), Gaps = 18/357 (5%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
+AP +A PS N S SLYVG+LD SV ++ L++LF+ +GQV S
Sbjct: 41 EAPTPTSAAPSAHQN---------------SASLYVGELDPSVTEAMLFELFSSIGQVAS 85
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +RK+G G
Sbjct: 86 IRVCRDAVTRRSLGYAYVNYNSSDDGEKALEELNYTLIKGKPCRIMWSQRDPALRKTGQG 145
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +
Sbjct: 146 NVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAV 205
Query: 189 NGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NGMLLN+K+VFVG + K++R S + K F NVYVKN+ T+D+ +++F ++G IT
Sbjct: 206 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQIT 265
Query: 247 STAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S ++ D + GKS+ FGFVNF + AA++V+ LN K + ++ YVG+AQKK+ERE EL+
Sbjct: 266 SASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELR 325
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
++E + E K++G+NLYVKNL D + D+KL+++F+ FGTITS KVMRD + R
Sbjct: 326 KQYEAARAEKQSKYQGVNLYVKNLHDDVDDEKLRDMFAPFGTITSAKVMRDTQPVGR 382
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 161/298 (54%), Gaps = 17/298 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ ++ A ++++ LD S+ L + FS+ G + S +V D++ + S GY +V +++
Sbjct: 50 PSAHQNSA-SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 108
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ + A+++LN L+ K + +R+ KT NV++KNL L
Sbjct: 109 DDGEKALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 164
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D +G SK +GFV+++ + A +++A+NG ++K+ +VG K
Sbjct: 165 FAAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKK 224
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-P 357
+R KFE+ K N+YVKN+D ++DD+ +ELF ++G ITS + D
Sbjct: 225 DR----MSKFEEM------KANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNE 274
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV F E A+KA+ E+N K + LYV AQ+K ER L+ Q+ R
Sbjct: 275 TGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAAR 332
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 129/288 (44%), Gaps = 50/288 (17%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL V D + +LF + GQ+ S + D T +S G+G+VN+ A +A+D
Sbjct: 238 TNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVD 297
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
ELN G+ + + + R+ +RK N+++KNL +D++
Sbjct: 298 ELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEK 357
Query: 144 LHDTFSTFGNILSCKVA--TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
L D F+ FG I S KV T +G+S + EE + + +
Sbjct: 358 LRDMFAPFGTITSAKVMRDTQPVGRSGSESPKKEGEEEEEEKKETEEKEPEKSGSD---- 413
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+E + DK T E D I GE I+ GKSK F
Sbjct: 414 -----EENKDGVDKL-------------TKEMDKVTIKGEQKIL----------GKSKGF 445
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
GFV F +PD+A ++V +N K + K YV AQ+K R+ +L+ +
Sbjct: 446 GFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEATIQ 493
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
D + D + +L E +T K + G S+G GFV FS +EA+KA+TEMN KM+ K
Sbjct: 413 DEENKDGVDKLTKEMDKVT-IKGEQKILGKSKGFGFVCFSNPDEATKAVTEMNQKMMNGK 471
Query: 391 PLYVALAQRKEERRARLQA 409
PLYVALAQRK+ R+++L+A
Sbjct: 472 PLYVALAQRKDVRKSQLEA 490
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/430 (47%), Positives = 278/430 (64%), Gaps = 25/430 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + D L+D F++ + SVR+CRD S+ RSL YGYVN+ + +A+ A++
Sbjct: 12 ASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIE 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK--------------------NLDKSI 139
N T L+GK IR+M+S+RDP R+SG GN+F+K NL SI
Sbjct: 72 AKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNLSDSI 131
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
DN L F FGNILSCKV G+S+GYGFVQF++EE A +AI+KLNG +++ KQ++
Sbjct: 132 DNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIY 191
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
G F+RK +R ++ N+Y+KNL TE+ L++ F EFG I S + +D +G S+
Sbjct: 192 AGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSR 251
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF 319
FGFVNF+ P+DA R++EALNG + K YV +AQKK ERE L+ +FE+ E K+
Sbjct: 252 GFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKY 311
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
G N+YVKN+DD+++DD L+E FS G ITS K+MRD GIS+G GFV FST +EASKA+
Sbjct: 312 RGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAV 371
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ-MRPPVGPRMPMYPPVAPGLGQQLFY 438
+G M KPLYVA+AQRKE+R+A+LQ ++Q M GP PV PG L+Y
Sbjct: 372 NTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPST----PVIPGGYPPLYY 427
Query: 439 GQGPPIIPPQ 448
P +IPP+
Sbjct: 428 TAPPGVIPPR 437
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/329 (56%), Positives = 245/329 (74%), Gaps = 2/329 (0%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
V ++ L++ F+ G V+S+RVCRDL RRSLGY YVN+ +A RALD +NF + G+P
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGY 170
IRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILSCKVATD S+GY
Sbjct: 64 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGY 123
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSE 228
GFV F+ EE+A +AI K+NGMLLN ++VFVG F+ + ERE + RF NVY+KN +
Sbjct: 124 GFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGD 183
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
++ L+++F ++G ITS VM D GK K FGFV+F+DP++A ++V LN K+ + K
Sbjct: 184 DLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKV 243
Query: 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
YVG+AQKK ER ELK +FEQ + ++++G+NLYVKNLDDSI D++L++ F+ FGTI
Sbjct: 244 LYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTI 303
Query: 349 TSCKVMRDPNGISRGSGFVAFSTAEEASK 377
TS KVM D NG S+G GFV FS EEA+K
Sbjct: 304 TSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 153/273 (56%), Gaps = 15/273 (5%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L + FS+ G +LS +V D + + S GY +V F A+ A+D +N ++ + + +
Sbjct: 9 LFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRPIRI-- 66
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+R+ + K+ NV++KNL ++ + F FG I S V D + SK +G
Sbjct: 67 --MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYG 124
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FV+F+ + A +++ +NG + ++ +VGK + ERE +L K A +F +
Sbjct: 125 FVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQK--------ARRF--M 174
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+Y+KN D + D+KL+E+F ++G ITS KVM D G +G GFV+F E A KA+ ++
Sbjct: 175 NVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDL 234
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
N K + K LYV AQ+K ER A L+ +F Q++
Sbjct: 235 NNKELNGKVLYVGRAQKKSERAAELKRRFEQLK 267
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 21/253 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ +YD F+ G ++S +V D + S GYG+V++ A A+ +
Sbjct: 82 NVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEES-NSKGYGFVHFETEEAANNAIQK 140
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R ++ G N++IKN +D++ L + F +G I
Sbjct: 141 VNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGDDLDDEKLREMFEKYGKI 200
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S KV D G+ +G+GFV F++ E+A+ A++ LN LN K ++VG +K ER +
Sbjct: 201 TSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRAQKKSERAAEL- 259
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+YVKNL ++ ++ L+K F FG ITS VM D++G+SK F
Sbjct: 260 KRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAKVMTDSNGRSKGF 319
Query: 262 GFVNFDDPDDAAR 274
GFV F P++A +
Sbjct: 320 GFVCFSAPEEATK 332
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L F G + S +V D S RS G+G+V ++A EAT
Sbjct: 273 RYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAKVMTD-SNGRSKGFGFVCFSAPEEAT 331
Query: 96 R 96
+
Sbjct: 332 K 332
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/315 (58%), Positives = 240/315 (76%), Gaps = 4/315 (1%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP YVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQ 298
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q Q
Sbjct: 299 RKEERQAHLTNQHMQ 313
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K +YV AQ+K ER+ L + Q +
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRM 315
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 109/195 (55%), Gaps = 22/195 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 116 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 172
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 231
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 232 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 290
Query: 197 QVFVGPFLRKQERES 211
+V RK+ER++
Sbjct: 291 PFYVALAQRKEERQA 305
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/326 (57%), Positives = 246/326 (75%), Gaps = 4/326 (1%)
Query: 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
A A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS
Sbjct: 67 AISPAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 126
Query: 150 TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FGNILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ER
Sbjct: 127 AFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER 185
Query: 210 EST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
E+ A F NVY+KN + ++ LK++F ++G S VM D GKSK FGFV+F+
Sbjct: 186 EAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFE 245
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+DA ++VE +NGK + K +VG+AQKK ER+ ELK +FEQ +E +++G+NLY+K
Sbjct: 246 KHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIK 305
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLDD+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V
Sbjct: 306 NLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV 364
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQ 413
SKPLYVALAQRKEER+A L Q+ Q
Sbjct: 365 GSKPLYVALAQRKEERKAHLTNQYMQ 390
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 166/291 (57%), Gaps = 23/291 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA+++
Sbjct: 106 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEK 163
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN +D++ L + FS +G
Sbjct: 164 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKT 223
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 224 LSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAEL- 282
Query: 215 KTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
K RF N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK F
Sbjct: 283 KRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGF 341
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
GFV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 342 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 392
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF++ G+ +SV+V D T +S G+G+V++ +
Sbjct: 193 AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHED 249
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N +NGK + R + I + N++IKNLD
Sbjct: 250 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 309
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 310 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 368
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 369 LYVALAQRKEER-----KAHLTNQYMQRIA 393
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/377 (48%), Positives = 263/377 (69%), Gaps = 4/377 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN++ L + F+ +G+V+S+RVCRD TRRSLGY YVN+ +A +AL+
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF ++G+PIRIM+S R P+ + AGN+F+KNL+ S+++KAL++ FS FGNI+SCK+A
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLA 136
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D +S+GYGFVQF+ EE+A+ AID NG++ K+++VG F + ER A +T F
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCF 196
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN ++ ++ L+++F +FG I S AV D DGK FGFV F++PDDA ++V+
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 279 LNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ D++ YV + QKK ER EL K++ E A ++EG NLY+KNLDD+I DD
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDD 316
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+ F E+G + S KVMR +G S+G GFV F +EA KA+T M GKMV +KPLYV++
Sbjct: 317 MLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSM 376
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+R+A + +Q+ Q
Sbjct: 377 AQRKEDRKAFIASQYMQ 393
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 135/485 (27%), Positives = 232/485 (47%), Gaps = 74/485 (15%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +L+ SVN LY+ F+ G +VS ++ D ++ S GYG+V + A +A+D
Sbjct: 105 NVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSK-SKGYGFVQFETEEAARKAIDG 163
Query: 101 LNFTPLNGKPIRI----MYSYRDPTIRKSGAG--NIFIKNLDKSIDNKALHDTFSTFGNI 154
N GK I + S R +++ N+F+KN +D + L F+ FG I
Sbjct: 164 TNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKI 223
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRKQEREST 212
+SC V+ D G+ G+GFV F+N + A+ A+ + L +D++++V F +K ER +
Sbjct: 224 VSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAE 283
Query: 213 ADKT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
D+ R+ N+Y+KNL + +D L++ FGE+G + S VMR DG+SK
Sbjct: 284 LDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKG 343
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ---SLKETAD 317
FGFV FD PD+A +++ A+ GK K YV AQ+K +R+ + ++ Q S++ A
Sbjct: 344 FGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQRIASIRMQAT 403
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
F Y+ D ++ ++ LF+ +G T + M S VA +T
Sbjct: 404 SFGSGMTYMS--DSTV----VQPLFACYGRGTLQRNM---------SNDVAVATMVPGQH 448
Query: 378 ALTEM-------NGKMVVSKPLY--------VALAQRKEERRARLQ------AQFSQMRP 416
+ +M +M V +Y A+ Q + R + + FS+ R
Sbjct: 449 SWLQMGDIDKSQTQRMAVGAMVYGQQNVRSQYAIMQSDGDCRGQTENPAPYSQTFSEFRG 508
Query: 417 PVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQV------IYS--------FLLIDYFNAL 462
+ PR+ P+ P + QL + +I ++ IY +L++ NA
Sbjct: 509 YMAPRVGQVEPLTPHILSQLTVQKQKQVIAERICPLVPRIYKGPDANKIMGMLLEMDNAE 568
Query: 463 VLLMI 467
+L+M+
Sbjct: 569 LLMML 573
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A+++ +LY+ +LD +++D L F + G V+S +V R RS G+G+V ++ E
Sbjct: 296 AKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRS-DDGRSKGFGFVCFDKPDE 354
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A +A+ + + KP+ + + R
Sbjct: 355 AVKAMTAMKGKMVCTKPLYVSMAQR 379
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/377 (48%), Positives = 263/377 (69%), Gaps = 4/377 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN++ L + F+ +G+V+S+RVCRD TRRSLGY YVN+ +A +AL+
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF ++G+PIRIM+S R P+ + AGN+F+KNL+ S+++KAL++ FS FGNI+SCK+A
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLA 136
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--F 218
D +S+GYGFVQF+ EE+A+ AID NG++ K+++VG F + ER A +T F
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCF 196
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN ++ ++ L+++F +FG I S AV D DGK FGFV F++PDDA ++V+
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 279 LNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ D++ YV + QKK ER EL K++ E A ++EG NLY+KNLDD+I DD
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDD 316
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+ F E+G + S KVMR +G S+G GFV F +EA KA+T M GKMV +KPLYV++
Sbjct: 317 MLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSM 376
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+R+A + +Q+ Q
Sbjct: 377 AQRKEDRKAFIASQYMQ 393
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 161/292 (55%), Gaps = 21/292 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +L+ SVN LY+ F+ G +VS ++ D ++ S GYG+V + A +A+D
Sbjct: 105 NVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSK-SKGYGFVQFETEEAARKAIDG 163
Query: 101 LNFTPLNGKPIRI----MYSYRDPTIRKSGAG--NIFIKNLDKSIDNKALHDTFSTFGNI 154
N GK I + S R +++ N+F+KN +D + L F+ FG I
Sbjct: 164 TNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKI 223
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRKQEREST 212
+SC V+ D G+ G+GFV F+N + A+ A+ + L +D++++V F +K ER +
Sbjct: 224 VSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAE 283
Query: 213 ADKT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
D+ R+ N+Y+KNL + +D L++ FGE+G + S VMR DG+SK
Sbjct: 284 LDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKG 343
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FGFV FD PD+A +++ A+ GK K YV AQ+K +R+ + ++ Q +
Sbjct: 344 FGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQRI 395
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A+++ +LY+ +LD +++D L F + G V+S +V R RS G+G+V ++ E
Sbjct: 296 AKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRS-DDGRSKGFGFVCFDKPDE 354
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A +A+ + + KP+ + + R
Sbjct: 355 AVKAMTAMKGKMVCTKPLYVSMAQR 379
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/315 (58%), Positives = 241/315 (76%), Gaps = 4/315 (1%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 1 MNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 61 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + +LK++F +FG S VMRD+ GKSK FGFV+++ +DA ++VE
Sbjct: 120 TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 180 MNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 240 RREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 299 RKEERKAHLTNQYMQ 313
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A +A+++
Sbjct: 29 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 86
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+ L + FS FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKT 146
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV DS G+S+G+GFV ++ E A A++++NG ++ K +FVG +K ER++
Sbjct: 147 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 206
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L++ F FG ITS VM + DG+SK FG
Sbjct: 207 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFG 265
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 315
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 118/210 (56%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S+ +S G+G+V+Y +
Sbjct: 116 AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHED 172
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A++E+N ++GK I R + I + N++IKNLD
Sbjct: 173 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 232
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 233 TIDDEKLRREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 291
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y++ ++
Sbjct: 292 LYVALAQRKEER-----KAHLTNQYMQRVA 316
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/330 (57%), Positives = 248/330 (75%), Gaps = 4/330 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V + L++ F+ G V+S+RVC+D+ TRRSLGY YVN+ +A RALD
Sbjct: 13 ASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALD 72
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF L G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGNILSCKV
Sbjct: 73 TMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 132
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR- 217
A D G S+GYGFV F+ EE+A +IDK+NGMLLN K+VFVG F+ ++ERE +K +
Sbjct: 133 AQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELGEKAKL 192
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN E T+D LK++F ++G ITS V+ + D KS+ FGFV F+DP+ A R+VE
Sbjct: 193 FTNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVE 252
Query: 278 ALNGKK-FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGK+ + K+ YVG+AQKK ER+ ELK KFEQ E ++++G+NLYVKNLDD+I D+
Sbjct: 253 DLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKMERMNRYQGVNLYVKNLDDTIDDE 312
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+L++ FS FGTITS KVM + S+G GF
Sbjct: 313 RLRKEFSPFGTITSAKVMLEERR-SKGFGF 341
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 159/289 (55%), Gaps = 16/289 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N L + + + +R+ + K+ NV++KNL + + F FG I S
Sbjct: 74 MNFDTLKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 129
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V +D G SK +GFV+F+ + A +S++ +NG + K+ +VGK + ERE EL
Sbjct: 130 CKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELG-- 187
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E A F N+YVKN + +DD LKE+F ++G ITS V+ + + SRG GFV
Sbjct: 188 ------EKAKLF--TNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFV 239
Query: 368 AFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
AF E A +A+ ++NGK ++ K LYV AQ+K ER+ L+ +F Q++
Sbjct: 240 AFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLK 288
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/319 (56%), Positives = 244/319 (76%), Gaps = 2/319 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A+ AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 174 VAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN+S T+D+ +++F G +TS+++ R+ DGKS+ FGFVNF + AA++V
Sbjct: 234 NFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAV 293
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K +E YVG+AQKK+ERE EL+ +E + E A K++G+NLY+KNLDD + DD
Sbjct: 294 EELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDD 353
Query: 337 KLKELFSEFGTITSCKVMR 355
KL+ +F+EFG ITS KVMR
Sbjct: 354 KLRIMFAEFGPITSAKVMR 372
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G + S +V D++ + S GY +V +++ + A+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 114 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 169
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D +G SK +GFV+++ + A ++++ +NG ++K+ YVG K +R+
Sbjct: 170 LSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 225
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+ ++DD+ +ELF G +TS + R+ +G SRG G
Sbjct: 226 SKFEEM------KANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFG 279
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV F+T E A+KA+ E+N K + + LYV AQ+K ER L+ + R
Sbjct: 280 FVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKSYEAAR 329
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 37/45 (82%)
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+++L+A
Sbjct: 430 GFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEA 474
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/371 (50%), Positives = 259/371 (69%), Gaps = 4/371 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +A
Sbjct: 105 KYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQ 164
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ALD +NF + GKPIR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG IL
Sbjct: 165 KALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 224
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 283
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVYVKN + ++ LK++F ++G S VM D+ GKSK FGFV+FD + A
Sbjct: 284 KVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAK 343
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LY+KNLDD+I
Sbjct: 344 KAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTI 403
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+KL FS FG+I+ K+MR+ G S+G G + FS+ EEA+KA+ EMNG+++ SKPLY
Sbjct: 404 DDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLY 462
Query: 394 VALAQRKEERR 404
+ALAQR ER+
Sbjct: 463 IALAQRPXERK 473
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 160/289 (55%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 169 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 224
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + + A R++E +NG D +VG+ + + +RE EL+
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 283
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K E N+YVKN D + D++LKE+FS++G S KVM D G S+G GF
Sbjct: 284 KVN----------EFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGF 333
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F + E A KA+ EMNGK V + L+V AQ+K ER+A L+ F Q++
Sbjct: 334 VSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLK 382
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 106/188 (56%), Gaps = 18/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV + ++D +L ++F++ G+ +SV+V D S +S G+G+V++++ A +A++
Sbjct: 289 TNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SGGKSKGFGFVSFDSHEAAKKAVE 347
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N +NG+ + ++ + R+ ++IKNLD +ID++
Sbjct: 348 EMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEK 407
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L FS+FG+I K+ + G+S+G+G + F + E A A+ ++NG +L K +++
Sbjct: 408 LWREFSSFGSISRVKIMREE-GRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALA 466
Query: 204 LRKQERES 211
R ER++
Sbjct: 467 QRPXERKN 474
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ LY+ +LD +++D +L+ F+ G + V++ R+ RS G+G + +++ EA
Sbjct: 387 RRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEG--RSKGFGLICFSSPEEA 444
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKS 125
T+A+ E+N L KP+ I + R P RK+
Sbjct: 445 TKAMAEMNGRILGSKPLYIALAQR-PXERKN 474
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/382 (50%), Positives = 257/382 (67%), Gaps = 36/382 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG--------------------------- 97
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
V D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 98 -----VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 151
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 152 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 211
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 212 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 271
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 272 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 330
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 331 LYVALAQRKEERQAHLTNQYMQ 352
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVA 368
+ +A + +LYV +L +++ L E FS G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F +A +AL MN ++ KP+ + +QR
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/423 (46%), Positives = 273/423 (64%), Gaps = 56/423 (13%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN A + RAL+EL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D S+GYGFV ++ E+A AI +NGMLLN+K+VFVG + K++R S + K F
Sbjct: 175 DENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFT 234
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEA 278
N+YVKN+ TT+++ +++F ++G ITS ++ D + GK++ FGFVN+ +DA ++VE
Sbjct: 235 NIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEE 294
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL-----DDSI 333
LN F ++ YVG+AQKK+ERE EL+ ++E + +E + K+ G+NLYVKNL DD +
Sbjct: 295 LNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDEL 354
Query: 334 -----------------------------------------------SDDKLKELFSEFG 346
D + +L +
Sbjct: 355 RKVFEPYGAITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKLD 414
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
T+T + + G S+G GFV FS +EA+KA+TE+N KMV KPLYVALAQRKE R+++
Sbjct: 415 TVT-IQGEKKLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQ 473
Query: 407 LQA 409
L+A
Sbjct: 474 LEA 476
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 150/291 (51%), Gaps = 22/291 (7%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+++ LD S+ L + FS+ G + S +V D++ + S GY +V ++ + A+++L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N L+ + + +R+ KT NV++KNL L F FG I S
Sbjct: 115 NYTLIKGRPCRI----MWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC 170
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM---ELK 305
V +D + SK +GFV+++ + A ++++ +NG ++K+ +VG K +R E+K
Sbjct: 171 KVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMK 230
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGS 364
F N+YVKN+D +D++ +ELF ++G ITS + D +G +RG
Sbjct: 231 ANF-------------TNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGF 277
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
GFV + E+A KA+ E+N + LYV AQ+K ER L+ Q+ R
Sbjct: 278 GFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 164/345 (47%), Gaps = 71/345 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 136 RKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-ENANSKGYGFVHYETAEAA 194
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
+A+ +N LN K + + + +D + K+ NI++KN+D + + F
Sbjct: 195 NQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELF 254
Query: 149 STFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
+G+I S +A D+ G++RG+GFV + E A A+++LN ++++VG +K
Sbjct: 255 EKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKH 314
Query: 208 ERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-- 253
ERE K ++ N+YVKNL++ +D+L+K+F +G ITS VMRD
Sbjct: 315 EREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAITSAKVMRDTL 374
Query: 254 -ADG------------------------------------------------KSKCFGFV 264
ADG KSK FGFV
Sbjct: 375 PADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKLDTVTIQGEKKLLGKSKGFGFV 434
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
F +PD+A ++V LN K K YV AQ+K R+ +L+ +
Sbjct: 435 CFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQLEASIQ 479
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/374 (50%), Positives = 260/374 (69%), Gaps = 4/374 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 103 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLAD 162
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG
Sbjct: 163 AQRALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 222
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 223 ILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAEL 281
Query: 214 --DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN + ++ LK++F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 282 RNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 341
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LY+KNLDD
Sbjct: 342 AKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDD 401
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL FS FG+I+ K+MR+ G S+G G + FS+ EEA+KA+ EMNG+++ SKP
Sbjct: 402 TIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKP 460
Query: 392 LYVALAQRKEERRA 405
LY+ALAQ+ ER A
Sbjct: 461 LYIALAQKPXERNA 474
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 172/324 (53%), Gaps = 25/324 (7%)
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNI---------FIKNLDKSIDNKALHDTFSTFG 152
N P+ R S+ P + +S N+ ++ +L + L FST G
Sbjct: 74 NRVPVTPPRNRTESSWDRPAVGRSKEMNVAAKYRQASLYVGDLHADVTEDLLFKKFSTVG 133
Query: 153 NILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
+LS ++ D + + S GY +V F A+ A+D +N + K + L +R++
Sbjct: 134 PVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALDTMNFDTIKGKPIR----LMWSQRDA 189
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
K+ NV++KNL + L + F FG I S+ VM D G S+ + FV+F +
Sbjct: 190 YLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIA 248
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R++E +NG D +VG+ + + +RE EL+ K A++F N+Y+KN D
Sbjct: 249 ADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNK--------ANEF--TNVYIKNFGD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ D++LKE+FS++G S KVM D +G S+G GFV+F + E A KA+ EMNGK + +
Sbjct: 299 DMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQL 358
Query: 392 LYVALAQRKEERRARLQAQFSQMR 415
L+V AQ+K ER+A L+ F Q++
Sbjct: 359 LFVGRAQKKSERQAELKQVFEQLK 382
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/383 (50%), Positives = 258/383 (67%), Gaps = 31/383 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A+ F SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVNY +
Sbjct: 6 AQNFAMASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPD 65
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF P+ G+PIRIM+S RDP++R+SG GN+FIKNLDK ID+KA++DTFS FGN
Sbjct: 66 AERALDTMNFDPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNFGN 125
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL-RKQEREST 212
ILSCKVATD G S+GYG +VG F+ R Q
Sbjct: 126 ILSCKVATDENGVSKGYG---------------------------YVGKFIPRAQRMREI 158
Query: 213 ADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ TR F NVYVKN E T+ L +F +FG I S VM++ D KSK FGFV+F++P+D
Sbjct: 159 GETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKE-DDKSKGFGFVSFENPED 217
Query: 272 AARSVEALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
A +V+ +N + K+ YVG+AQKK ER+ ELK ++E E ++EG+NLY+KNLD
Sbjct: 218 AEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLD 277
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DS+ D +L++ F +FG ITS KVM D G S+G GFV FS+ +EA++A++EMN + + +K
Sbjct: 278 DSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNK 337
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKE+R+A+L +Q Q
Sbjct: 338 PLYVALAQRKEDRKAQLASQLVQ 360
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 46/291 (15%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L + FS G +LS +V D++ + S GY +V + A+ A+D
Sbjct: 12 ASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAERALD 71
Query: 187 KLNGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+N VF P + +R+ + ++ NV++KNL + + F FG I
Sbjct: 72 TMNF-----DPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNFGNI 126
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V D +G SK +G+V GK ++ +AQ+ E
Sbjct: 127 LSCKVATDENGVSKGYGYV----------------GK-------FIPRAQRMRE------ 157
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
+ ET KF N+YVKN D++ +D L +LFS+FG I SC VM++ + S+G G
Sbjct: 158 ------IGETTRKF--TNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKE-DDKSKGFG 208
Query: 366 FVAFSTAEEASKALTEMNGKMVVS-KPLYVALAQRKEERRARLQAQFSQMR 415
FV+F E+A A+ EMN + S K LYV AQ+K ER+A L+ ++ ++
Sbjct: 209 FVSFENPEDAEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLK 259
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/244 (70%), Positives = 214/244 (87%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F +TSLYVGDL SV D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVNYN +A R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNFTP+NGKPIRIMYS RDP+ RKSG GNIFIKNLDKSIDNKAL+DTF FGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ATD G+SRGYGFVQF+ +ESA+SAIDKLNGML+NDK+VFVGPF+RKQ+RE+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F+NVYVKNLS+T T+D+LK++FG++G ITS VMRD+DGKS+CFGFVNF++ D AA++V
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 277 EALN 280
+ LN
Sbjct: 272 QELN 275
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 150/264 (56%), Gaps = 17/264 (6%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAI 185
A ++++ +L +S+ + L D FS G ++S +V D + +S GY +V ++N+ A A+
Sbjct: 34 ATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARAL 93
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ LN +N K + + R+ ++ K+ N+++KNL ++ L F FG I
Sbjct: 94 ELLNFTPINGKPIRI----MYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNI 149
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D G+S+ +GFV F+ + A +++ LNG +DK+ +VG +K +RE
Sbjct: 150 LSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRE---- 205
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
+ + N+YVKNL D+++DD+LKE+F ++GTITS VMRD +G SR G
Sbjct: 206 --------NVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFG 257
Query: 366 FVAFSTAEEASKALTEMNGKMVVS 389
FV F A+ A++A+ E+N +V S
Sbjct: 258 FVNFENADAAAQAVQELNDGVVSS 281
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVEAL 279
+YV +L E+ + L +F + G + S V RD + KS + +VN+++ DAAR++E L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + K + + + G N+++KNLD SI + L
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTG----------------NIFIKNLDKSIDNKALY 140
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ F FG I SCK+ DP+G SRG GFV F E A A+ ++NG ++ K ++V R
Sbjct: 141 DTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR 200
Query: 400 KEER 403
K++R
Sbjct: 201 KQDR 204
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASK 377
F +LYV +L +S+ D +L ++FS+ G + S +V RD N S G +V ++ +A++
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERR 404
AL +N + KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/455 (44%), Positives = 286/455 (62%), Gaps = 45/455 (9%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYNA + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKN++ TEDD +++F ++G +TS+++ RD +GKS+ FGFVNF + A+++V
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-------QSLKETADKFEGLNLYVKNL 329
+ LN K F ++ YVG+AQKK+ERE EL+ +E Q + + + +
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARRGEGQQMNKECGSITSTKVMRETP 357
Query: 330 DDSISDDKLK-ELFSEFGTITSCKVMRDPN------------------------GISRGS 364
+ + + K K E E +V +P G S+G
Sbjct: 358 TEVVEEKKEKAETVKENQEEVKDEVKEEPKEESKDETKEGEEDKKAEKKSDKKLGKSKGF 417
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS-----QMRPPVG 419
GFV FS ++A+KA+ EMN +M KPLYVALAQRK+ R+++L+A +M+ V
Sbjct: 418 GFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQIRMQQAVA 477
Query: 420 ----PRMPMYPPVAPGLGQQL-FYGQGPPIIP-PQ 448
P+ M PPV GQQ F QG +P PQ
Sbjct: 478 HAGMPQQYMQPPVYFAPGQQPGFMPQGGRGVPFPQ 512
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/375 (49%), Positives = 253/375 (67%), Gaps = 36/375 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G ++S+RVCRD+ T RSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG V
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSG--------------------------------VV 99
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G +GYGFV F+ +E+A+ AI+K+NGMLLND++VFVGPF ++ERE+ A F
Sbjct: 100 CDENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREAELGARAKEF 158
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 159 TNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDV 218
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 219 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 278
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 279 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L + Q
Sbjct: 338 RKEERQAHLTNLYMQ 352
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D L DLF + G +SV+V D S + S G+G+V++ +
Sbjct: 155 AKEF--TNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHED 211
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+D +N LNGK I + + + D R G N+++KNLD
Sbjct: 212 AQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 270
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 271 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 329
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N+Y++ ++
Sbjct: 330 PLYVALAQRKEERQA-----HLTNLYMQRMA 355
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 188/405 (46%), Positives = 261/405 (64%), Gaps = 4/405 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYVGDL + L+D F+++G V SVRVCRD +T SL YGYVNY + +A AL++
Sbjct: 103 ALYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEK 162
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + + KPIR+M+S RDP R+SG GN+F+KNL+ IDN L + FS FG+ILSCKVA
Sbjct: 163 MNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDILSCKVA 222
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
+ G SRGYGFVQF +ESA AI+ LN +Q+ V F++K ER + D ++ N
Sbjct: 223 RNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERSANNDD-KYTN 281
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + TE+ +K F +FG + S +M+ DG SK FGFV+F PD A ++ EA+N
Sbjct: 282 LYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPDSAKKAKEAMN 341
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G K YV +AQKK ER+ L+ E+ E K G N+Y+KN+ D + D+ L+E
Sbjct: 342 GIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKNISDRVDDETLRE 401
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
F EFG ITS K+MRD GIS+G GFV ++T +EA A++ M G M KPLYVA+AQRK
Sbjct: 402 RFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYVAIAQRK 461
Query: 401 EERRARLQAQFSQMRPPVGPRMPMYPPVAPGL---GQQLFYGQGP 442
E+R+ARL+ +F+++ VG P+ P P + + QGP
Sbjct: 462 EDRKARLEQRFAELATMVGAASPVIPTGYPHVYFAHPSTHFPQGP 506
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 210/445 (47%), Positives = 278/445 (62%), Gaps = 65/445 (14%)
Query: 30 GVGDA-RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GVG A F S SLYVGDL VN+ LY++FN +G V S+RVCRD TRRSLGY YVNY
Sbjct: 2 GVGGAPNSFTSASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNY 61
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+ A +A RALD +NFT + GKP RIM+S RDP++R+SG GNIF+KNL + IDNK L+DTF
Sbjct: 62 HQAADAERALDSMNFTDIKGKPCRIMWSQRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTF 121
Query: 149 STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
S FGNILSCKV D G S+GYG+V ++ E+A SAIDKL+GML++ K+V VG F+R
Sbjct: 122 SLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMR-- 179
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV----------------- 250
R++ D+ + N+++KN+ + L+ F EFG I S +V
Sbjct: 180 -RDTRPDQEVYTNLFIKNMPYEWDDKRLEAEFAEFGEIVSASVKMGKRKKFAKKGKKAEA 238
Query: 251 MRDADGK----------------------------------SKCFGFVNFDDPDDAARSV 276
+D D K S FGFVNF + AA +V
Sbjct: 239 KKDEDDKEDGAEDKPAEEEKPEEEEAKPAEEEAKPESTEPESLGFGFVNFATHEAAAAAV 298
Query: 277 EALNGKKFD--------DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
EA+N K + +K +VG+AQKK ER+ EL+ K+E E KF+G+NLYVKN
Sbjct: 299 EAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKYEAEKMERIAKFQGVNLYVKN 358
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV 387
LDD+++DD L++ F GTITS K+MRD SRG GFV FST E+A++A+ EM+GK+V
Sbjct: 359 LDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIV 418
Query: 388 VSKPLYVALAQRKEERRARLQAQFS 412
KP+YV+LAQR+E RRA+L+AQ +
Sbjct: 419 AGKPIYVSLAQRREVRRAQLEAQHA 443
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 192/392 (48%), Positives = 259/392 (66%), Gaps = 9/392 (2%)
Query: 12 VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71
+A +P P+ N + + D + F S SLYVGDL V ++ LY++FN +G V S+RV
Sbjct: 1 MASTVKPVPSENLMM--MPMRDTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRV 58
Query: 72 CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131
CRD TR+SLGY YVNY + +A AL+ LN+ + G P RIM+S RDP++R+SGAGNIF
Sbjct: 59 CRDSVTRKSLGYAYVNYYSTQDAQEALENLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIF 118
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
+KNLDKSID K+L+DTFS FG ILSCKVA D+ G S+ YGFV ++NEESA+ AI+K+NGM
Sbjct: 119 VKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGM 178
Query: 192 LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
L+ K+V V PFLRKQ+RES + F N+YV+N E+ L++ ++G ITS +M
Sbjct: 179 LIGGKRVEVAPFLRKQDRES---EEVFTNLYVRNFPADWDEEALRQFLEKYGEITS--MM 233
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD--KEWYVGKAQKKYEREMELKGKFE 309
D K + F FVN+ +P+ A V LN K ++ + V Q K +R+ L+ +F
Sbjct: 234 LKEDSKGRRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCPHQDKAKRQNLLRAQFN 293
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
S DK NLY+KNLDDS D+ L ELF FGTITS KVM D N SRG GFV F
Sbjct: 294 NSTMAQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCF 353
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKE 401
+ +EA+KA+ M+ K+V KPLYV LA++++
Sbjct: 354 TNPQEATKAIAAMHLKLVKGKPLYVGLAEKRD 385
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 145/303 (47%), Gaps = 26/303 (8%)
Query: 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYG 171
+M RD + S + +++ +L + L++ F+T G + S +V DS+ +S GY
Sbjct: 14 MMMPMRDTQVFSSAS--LYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYA 71
Query: 172 FVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
+V + + + A+ A++ LN + + + R+ + ++ N++VKNL ++
Sbjct: 72 YVNYYSTQDAQEALENLNYIEIKGHPTRI----MWSNRDPSLRRSGAGNIFVKNLDKSID 127
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
L F FG I S V DA G SK +GFV++++ + A ++E +NG K V
Sbjct: 128 TKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEV 187
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
+K +RE E + F NLYV+N ++ L++ ++G ITS
Sbjct: 188 APFLRKQDRESE-------------EVF--TNLYVRNFPADWDEEALRQFLEKYGEITSM 232
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRKEERRARLQA 409
+ D G R FV + E A + + +N + S+PL V Q K +R+ L+A
Sbjct: 233 MLKEDSKG--RRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCPHQDKAKRQNLLRA 290
Query: 410 QFS 412
QF+
Sbjct: 291 QFN 293
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 180/317 (56%), Positives = 237/317 (74%), Gaps = 3/317 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 VCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK+IF ++G S VM D GKSK FGFV+F+ +DA R+V+
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++
Sbjct: 250 EMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 338 LKELFSEFGTITSCKVM 354
L++ FS FGTITS KVM
Sbjct: 310 LRKEFSPFGTITSAKVM 326
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 169/302 (55%), Gaps = 19/302 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + V + +R+ + K+ N+++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + + ERE E+
Sbjct: 127 SCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ + E N+Y+KN + + D+KLKE+F ++G S +VM D +G S+G GF
Sbjct: 186 RAK----------EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGF 235
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYP 426
V+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+ RM Y
Sbjct: 236 VSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQ---DRMTRYQ 292
Query: 427 PV 428
V
Sbjct: 293 GV 294
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 191/370 (51%), Positives = 250/370 (67%), Gaps = 36/370 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRS GY YVN+ +A RALD
Sbjct: 11 TSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF +NGK +RIM+S RDP++RKSG V
Sbjct: 71 TMNFDVINGKSVRIMWSQRDPSLRKSG--------------------------------V 98
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 99 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREAELGARAKE 157
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVKN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 158 FTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDAQKAVD 217
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK+ K+ YVG+AQKK ER+ ELK KFEQ ++ +++GLNLYVK LDD I D++
Sbjct: 218 ELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDYIDDER 277
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNGK+V +KPLYVALA
Sbjct: 278 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALA 336
Query: 398 QRKEERRARL 407
QRKEER+A L
Sbjct: 337 QRKEERQAHL 346
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 22/195 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++YV + ++D L DLF + G +SV+V D +S G+G+V++ +
Sbjct: 155 AKEF--TNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTD-ERGKSKGFGFVSFERGED 211
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DELN L+GK I + + + D R G N+++K LD
Sbjct: 212 AQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGL-NLYVKYLD 270
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 271 DYIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGKIVATK 329
Query: 197 QVFVGPFLRKQERES 211
++V RK+ER++
Sbjct: 330 PLYVALAQRKEERQA 344
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/399 (46%), Positives = 274/399 (68%), Gaps = 6/399 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F S SLYVGDL V ++ LY+ F+ G ++SVRVCRD + RSLGYGYVN++ +A
Sbjct: 16 FPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGH 75
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ +NF L+GKP+RIM+ +RDP++R+SG GN+F+ +LD SIDNK L+D F+ FG ILS
Sbjct: 76 ALNTMNFDVLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILS 135
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR--KQERESTAD 214
CKV +D G +G+GFV F+ E+A AI ++NG L+ +++VFVG F R ++E E A
Sbjct: 136 CKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAK 194
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+F NVYVKN ++ TT++ L +IF ++G ++S +M D GKSK FGF+ F+ DA R
Sbjct: 195 MEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKR 254
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++E +NGK+F ++ YV +AQKK ERE EL+ K E+ + K+ G++L+VKNL +S
Sbjct: 255 AIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTD 314
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+ L+++F+ FGT+TS KV+ G +G GFV+FS+ EEA KA+ EM+GKM+ ++PLYV
Sbjct: 315 DEHLRKIFAPFGTVTSAKVIVK-GGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYV 373
Query: 395 ALAQRKEERRARLQAQFSQMR--PPVGPRMPMYPPVAPG 431
+ A+ K+ERRA + + + + P P P P P
Sbjct: 374 SYARYKQERRAYFASYYGKKKASPAKSPSTPDTSPSQPA 412
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 182/374 (48%), Positives = 256/374 (68%), Gaps = 2/374 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+ SLYVGDL SV + LYD F + + SVR+C+D ST RSL YGY N+ + +A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLA 81
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++ N + LNGK IR+M+S R+P R++G GN+F+KNL +SI N L D F FGNI+SC
Sbjct: 82 IEKKNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVAT G+SRGYGFVQF+ E++A +AI+KLN + K+++VG F++K +R +K
Sbjct: 142 KVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKAEEK-- 199
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ NVY+KNL ED L++ F EFG I S A+ +D +G K + FVNFD P+DA + E
Sbjct: 200 YTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAE 259
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG +F K YVG+AQKK ERE L+ +F++ +E K + N+YVKN++ +++++
Sbjct: 260 TMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEE 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+ GTITS K+M D G S+G GFV FST EEA A+ +GKM KPLYVA A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATA 379
Query: 398 QRKEERRARLQAQF 411
Q+KE+R+ +LQ QF
Sbjct: 380 QKKEDRKMQLQVQF 393
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 160/290 (55%), Gaps = 15/290 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L S+ ++ L D+F + G +VS +V +S GYG+V +
Sbjct: 105 DARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVA-TFEDGKSRGYGFVQFEQED 163
Query: 93 EATRALDELNFTPLNGKPIRI--MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A A+++LN T + GK I + D + N+++KNLD ++ L + FS
Sbjct: 164 AAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKAEEKYTNVYMKNLDADVNEDLLREKFSE 223
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I+S +A D G +GY FV FD E A+ A + +NG K ++VG +K ERE
Sbjct: 224 FGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAERE 283
Query: 211 STAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
K + +N+YVKN++ TE++L+K F + G ITST +M D GKS
Sbjct: 284 QLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F P++A +V+ +GK F K YV AQKK +R+M+L+ +F
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQKKEDRKMQLQVQF 393
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 154/287 (53%), Gaps = 19/287 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L S+ L+D F+ F ++ S ++ D S G+S YG+ F + + A AI+
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIE 83
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
K N LLN K + V +R E A + NV+VKNL E+ T L+ +F +FG I
Sbjct: 84 KKNHSLLNGKMIRVMWSVR----EPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIV 139
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V DGKS+ +GFV F+ D A ++E LN KE YVGK KK +R
Sbjct: 140 SCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDR-----A 194
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K E+ N+Y+KNLD +++D L+E FSEFG I S + +D NG+ +G F
Sbjct: 195 KAEEKY---------TNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAF 245
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
V F E+A A MNG SK LYV AQ+K ER L+ QF +
Sbjct: 246 VNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKE 292
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 188/371 (50%), Positives = 249/371 (67%), Gaps = 7/371 (1%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
D + F S SLYVGDL V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY +
Sbjct: 20 DTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQ 79
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A AL+ LN+ + G P RIM+S RDP++R+SGAGNIF+KNLDKSID K+L+DTFS FG
Sbjct: 80 DAEAALESLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFG 139
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
ILSCKVA D+ G S+ YGFV ++NEESA+ AI+K+NGML+ K+V V PFLRKQ+RE
Sbjct: 140 PILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDREG- 198
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ F N+YV+N E+ L++ ++G ITS +M D K + F FVN+ +P+ A
Sbjct: 199 --EEVFTNLYVRNFPADWNEEALRQFLEKYGEITS--MMLKEDSKGRRFAFVNYKEPEVA 254
Query: 273 ARSVEALNGKKFDD--KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
V LN K D+ + V Q K +R+ L+ +F S DK NLY+KNLD
Sbjct: 255 KEVVNTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQFNNSSMGQEDKRVTSNLYIKNLD 314
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
DS D+ L ELF FGTITS KVM D N SRG GFV F+ +EA+KA+ M+ K+V K
Sbjct: 315 DSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGK 374
Query: 391 PLYVALAQRKE 401
PLYV LA++++
Sbjct: 375 PLYVGLAEKRD 385
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
NN +G + V+++LY+ +LD S +D L +LF G + S +V D + S G+G+V
Sbjct: 293 NNSSMGQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLD-ANNHSRGFGFV 351
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRI 113
+ EAT+A+ ++ + GKP+ +
Sbjct: 352 CFTNPQEATKAIAAMHLKLVKGKPLYV 378
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 184/368 (50%), Positives = 258/368 (70%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAEL 182
Query: 214 DK--TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN + ++ LK++F ++G S VMRD+ GKSK FGFV+FD +
Sbjct: 183 QNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LY+KNLD+
Sbjct: 243 AKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDE 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ EEA+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSPEEATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQ+
Sbjct: 362 LNIALAQK 369
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 165/289 (57%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N L+ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + A R++E +NG D +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A++F N+Y+KN D + D++LKE+FS++G S KVMRD +G S+G GF
Sbjct: 185 K--------ANEF--TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F + E A KA+ EMNGK + + L+V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 283
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 191/348 (54%), Positives = 245/348 (70%), Gaps = 12/348 (3%)
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RA+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK IDNK+++DTFS FGNIL
Sbjct: 25 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNIL 84
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA D G S+GYGFV F+ EE+A++AI K+NGMLL K+VFVG F + +R +
Sbjct: 85 SCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGE 144
Query: 216 T--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
T +F NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A
Sbjct: 145 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAE 203
Query: 274 RSVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
+V+AL+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD+
Sbjct: 204 TAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDE 263
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
++ DD LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKP
Sbjct: 264 TVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKP 323
Query: 392 LYVALAQRKEERRARLQAQFSQ------MRPPVGPRMPMYPPVAPGLG 433
LYVA+AQRKE+RRA+L +Q+ Q M V P MY P PG G
Sbjct: 324 LYVAIAQRKEDRRAQLASQYMQRLASMRMHGNV-PGAAMYNPTQPGPG 370
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 22/298 (7%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD +++ +YD F+ G ++S +V D S GYG+V++ A
Sbjct: 52 RRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAA 110
Query: 95 TRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTF 148
A+ ++N L GK + + + R R+ G N+++KN + + L F
Sbjct: 111 QNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLF 170
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRK 206
+ FGNI SC+V T G+S+G+GFV F N E A++A+ L+ + D ++ V +K
Sbjct: 171 AKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKK 229
Query: 207 QERESTADKTRFN------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
ER + K N+YVKNL ET +D LKK F +G ITS VM D
Sbjct: 230 SERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE 289
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+G+SK FGFV F+ P++A +V +N K K YV AQ+K +R +L ++ Q L
Sbjct: 290 NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 347
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 186/373 (49%), Positives = 258/373 (69%), Gaps = 4/373 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 197 AAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVAD 256
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FSTFG
Sbjct: 257 AQKALDTMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGK 316
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G S+GY FV F N+ +A AI+++NG LL + +VFV F +++RES
Sbjct: 317 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESEL 375
Query: 214 DK--TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ F NVY+KN + + LK++F ++G S VM D+ GKSK FGFV+F +
Sbjct: 376 KNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEA 435
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + G+ LY+KNLDD
Sbjct: 436 AKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDD 495
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ F+ FG+I+ KVM++ G S+G G + FS+ EEA KA+TEMNG+++ SKP
Sbjct: 496 TIDDEKLRKEFASFGSISRVKVMQE-EGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKP 554
Query: 392 LYVALAQRKEERR 404
L +ALAQR EER+
Sbjct: 555 LNIALAQRNEERK 567
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F + A+ A+D
Sbjct: 204 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDT 263
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I S
Sbjct: 264 MNFDVIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILS 319
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NG + +V + + + +RE ELK K
Sbjct: 320 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNK 378
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN D + D +LKE+FS++GT S KVM D +G S+G GFV
Sbjct: 379 --------ASEF--TNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFV 428
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F++ E A A+ EMNGK + + ++V AQ+K ER+A L+ F Q+R
Sbjct: 429 SFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLR 476
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 109/192 (56%), Gaps = 20/192 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR-AL 98
T++Y+ + ++D +L ++F++ G +SV+V D S+ +S G+G+V++ A+HEA + A+
Sbjct: 383 TNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKGFGFVSF-ASHEAAKNAV 440
Query: 99 DELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK 142
+E+N +NG+ I ++ R R+ ++IKNLD +ID++
Sbjct: 441 EEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDE 500
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L F++FG+I KV + G+S+G+G + F + E A A+ ++NG +L K + +
Sbjct: 501 KLRKEFASFGSISRVKVMQEE-GRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIAL 559
Query: 203 FLRKQERESTAD 214
R +ER++ D
Sbjct: 560 AQRNEERKTCFD 571
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 26/208 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L K F G + S + RD +S + +VNF
Sbjct: 195 NVAAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHV 254
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 255 ADAQKALDTMN---FD-----------------VIKGKSIRLMWSQRDAYLRKSGIGNVF 294
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNG
Sbjct: 295 IKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGT 353
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
++ + ++V+ + +++R + L+ + S+
Sbjct: 354 LLKNCRVFVSRFKSRKDRESELKNKASE 381
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 181/322 (56%), Positives = 235/322 (72%), Gaps = 21/322 (6%)
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 155 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 214
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 215 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 273
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 274 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 333
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 334 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 393
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS K +EEA+KA+TEMNG++V +KP
Sbjct: 394 GIDDERLRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVATKP 435
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 436 LYVALAQRKEERQAHLTNQYMQ 457
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 156/290 (53%), Gaps = 38/290 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 190 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 247
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 248 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 307
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 308 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 367
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS
Sbjct: 368 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA-------------- 413
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+ ++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 414 ----KNSEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 459
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 44/211 (20%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 277 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 333
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 334 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 392
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S K N E A A+ ++NG ++ K
Sbjct: 393 DGIDDERLRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVATK 434
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 435 PLYVALAQRKEERQA-----HLTNQYMQRMA 460
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 192/391 (49%), Positives = 256/391 (65%), Gaps = 9/391 (2%)
Query: 20 PATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
P NGI + + + F S SLYVGDL V ++ LY++FN +G V S+RVCRD TR+
Sbjct: 9 PNDNGIM--MPMREGQVFSSASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRK 66
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
SLGY YVNY + +A AL+ LN+ + G P RIM+S RDP++RKSGAGNIF+KNLDKSI
Sbjct: 67 SLGYAYVNYYSTQDAEAALENLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSI 126
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
D K+L+DTF+ FG ILSCKVA DS G SR YGFV +++EESA+ AI+K+NGML+ K+V
Sbjct: 127 DTKSLYDTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVE 186
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
V PFLRKQ+RE+ + + N+YV+N E+ L++ ++G ITS +M D K +
Sbjct: 187 VAPFLRKQDRET---EEVYTNLYVRNFPADWDEEALRQFLEKYGEITS--MMLKEDSKGR 241
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKE--WYVGKAQKKYEREMELKGKFEQSLKETAD 317
F FVN+ + A V LN K ++ V Q K +R+ LK +F D
Sbjct: 242 RFAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDD 301
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
K NLY+KNLDD+ D L ELF +FGTITS KVM D N SRG GFV FS +EA+K
Sbjct: 302 KRLTSNLYIKNLDDTFDDASLGELFKQFGTITSSKVMLDANNNSRGFGFVCFSNPQEATK 361
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
A+ M+ K+V KPLYV LA+++++R R+Q
Sbjct: 362 AIAAMHLKLVKGKPLYVGLAEKRDQRLMRMQ 392
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 176/370 (47%), Positives = 251/370 (67%), Gaps = 4/370 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDLD V + L+ F+ G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 142 AAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLAD 201
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF L G+P+R+M+S RD +RKSG GN+FIKNLD+S+D+KAL + FS FG
Sbjct: 202 AQRALDTMNFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGK 261
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-- 211
ILS KV +D G SRGY FV F + +A AI+ +NG L ++FVG F +Q RE+
Sbjct: 262 ILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAEL 320
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ F N+Y+KN + L+ +F E+G S VM DA G+S+ FGFV+F+ +
Sbjct: 321 RSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEA 380
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+VEALNG++ D + +VG+AQ+K ER+ EL+ FEQ ++ + +G LYVKNLDD
Sbjct: 381 ARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDD 440
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
++ +D+L+ FS FG ++ K+MR+ G S+G G + FS+A+EA++AL EMNG+++ SKP
Sbjct: 441 AVDEDRLRREFSGFGAVSRVKIMRE-EGRSKGFGLICFSSADEAARALAEMNGRVLGSKP 499
Query: 392 LYVALAQRKE 401
L +ALAQ +
Sbjct: 500 LSIALAQSRR 509
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 158/286 (55%), Gaps = 16/286 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +LD + AL FS G +LS ++ D L + S GY +V F A+ A+D
Sbjct: 149 SLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALDT 208
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N +L + + L +R++ K+ NV++KNL + + L + F FG I S
Sbjct: 209 MNFDVLRGRPLR----LMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILS 264
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ V+ D G S+ + FV+F + A R++E +NG + +VG+ Q + RE EL+ +
Sbjct: 265 SKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSR 323
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F NLY+KN + D +L+ +FSE+G S KVM D +G SRG GFV
Sbjct: 324 --------AGEFT--NLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFV 373
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+F + E A +A+ +NG+ V +PL+V AQRK ER+A L+ F Q
Sbjct: 374 SFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQ 419
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 20/201 (9%)
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPD 270
A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 141 VAAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLA 200
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNL 329
DA R+++ +N FD R L+ + Q ++ + G+ N+++KNL
Sbjct: 201 DAQRALDTMN---FD------------VLRGRPLRLMWSQ--RDAHLRKSGVGNVFIKNL 243
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D S+ D L E FS FG I S KV+ D G SRG FV F A +A+ MNG +
Sbjct: 244 DRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRG 302
Query: 390 KPLYVALAQRKEERRARLQAQ 410
L+V Q ++ R A L+++
Sbjct: 303 CRLFVGRFQSRQAREAELRSR 323
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/362 (50%), Positives = 256/362 (70%), Gaps = 4/362 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +A +ALD
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GK IR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG ILS KV
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKV 129
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA--DKTR 217
+D G S+GY FV F N+ +A AI+++NG LL D +VFVG F +++RE+ +
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNKASE 188
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN + ++ L+++F ++G S VM D GKSK FGFV+FD+ + A ++VE
Sbjct: 189 FTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVE 248
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK + + +VG+AQKK ER+ ELK FEQ +E K +G+ LY+KNLDD+I D+K
Sbjct: 249 EMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEK 308
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+I+ KVM++ G S+G G + FS+ EEA+KA+TEMNG+++ SKPL +AL+
Sbjct: 309 LRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALS 367
Query: 398 QR 399
Q+
Sbjct: 368 QK 369
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL + L + F FG I
Sbjct: 70 TMNFDMIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G SK + FV+F + A R++E +NGK D + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A +F N+Y+KN D + D++L+E+FS++G S KVM DP+G S+G GF
Sbjct: 185 K--------ASEF--TNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F E A KA+ EMNGK + + ++V AQ+K ER+A L+ F Q +
Sbjct: 235 VSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQK 283
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 26/204 (12%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAA 273
K R ++YV +LS TED L K F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQ 65
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLYVKNL 329
++++ +N FD +KGK S ++ + G+ N+++KNL
Sbjct: 66 KALDTMN---FD-----------------MIKGKSIRLMWSQRDACLRKSGIGNVFIKNL 105
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK++
Sbjct: 106 DRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKD 164
Query: 390 KPLYVALAQRKEERRARLQAQFSQ 413
++V + +++R A L+ + S+
Sbjct: 165 CKVFVGRFKNRKDREAELRNKASE 188
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ LY+ +LD +++D +L F+ G + V+V ++ +S G+G + +++ EA
Sbjct: 288 RKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEEA 345
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E+N L KP+ I S +
Sbjct: 346 TKAMTEMNGQILGSKPLNIALSQK 369
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 176/318 (55%), Positives = 233/318 (73%), Gaps = 3/318 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+++F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 190 FTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDK
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 338 LKELFSEFGTITSCKVMR 355
L++ FS +G ITS K R
Sbjct: 310 LRKEFSPYGVITSAKKRR 327
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 160/296 (54%), Gaps = 20/296 (6%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
SG+G ++++ +L + L++ FS G ILS +V D + +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N +L + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I S V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL A E N+YVKNL + + L+ELFS+FG + S KVMRD +G
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
SR GFV F EEA KA+ MNGK V + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L +LF+Q G+++SV+V RD S S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSG-HSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCK 158
LD SID+ L FS +G I S K
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAK 324
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 176/318 (55%), Positives = 232/318 (72%), Gaps = 3/318 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDK
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 338 LKELFSEFGTITSCKVMR 355
L++ FS +G ITS K R
Sbjct: 310 LRKEFSPYGVITSAKKRR 327
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 160/296 (54%), Gaps = 20/296 (6%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
SG+G ++++ +L + L++ FS G ILS +V D + +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N +L + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I S V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL A E N+YVKNL + + L++LFS+FG + S KVMRD +G
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
SR GFV F EEA KA+ MNGK V + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD S S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG-HSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCK 158
LD SID+ L FS +G I S K
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAK 324
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 185/382 (48%), Positives = 248/382 (64%), Gaps = 36/382 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RK
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKX---------------------------- 96
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 97 -----XXXXXXXXSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 151
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 152 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 211
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 212 AQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 271
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 272 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 330
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 331 LYVALAQRKEERQAHLTNQYMQ 352
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVA 368
+ +A + +LYV +L +++ L E FS G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
F +A +AL MN ++ KP+ + +QR
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 183/368 (49%), Positives = 255/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 124 ILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEF 182
Query: 214 DKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN + ++ L ++F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 QNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+VE +NGK + + +VG+AQKK ER+ ELK FEQ E + +G LY+KNLD+
Sbjct: 243 AKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDE 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+AEEA+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQ+
Sbjct: 362 LNIALAQK 369
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 157/291 (53%), Gaps = 16/291 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N L+ K + L +R++ K+ NV++KNL + L + F FG I
Sbjct: 70 TMNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + A R++E +NG D +VG+ + + +RE E +
Sbjct: 126 SSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K E N+Y+KN D + D++L E+FS++G S KVM D +G S+G GF
Sbjct: 185 K----------AHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
V+F + E A +A+ EMNGK + + L+V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHE 285
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 180/366 (49%), Positives = 257/366 (70%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLYVGDL V ++ L+ F+ +G V+S+R+CRDL TR SLGY YVN+ +A
Sbjct: 6 KYRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + G+ IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG IL
Sbjct: 66 RALDTMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKIL 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV D G SRGYGFV F N+ +A AI+++NG+LL D ++FVGPF +++RE+
Sbjct: 126 SSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQN 184
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+ F N+Y+KN + ++ LK+ F +G I S VM D+ GKSK FGFV+FD + A
Sbjct: 185 KASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAK 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+V+ +NG++ ++ +VG+AQKK ER+ ELK FEQ +E + + G +YVKNLD++I
Sbjct: 245 RAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
++KL++ FS FG+I KVM++ G SRG G + FS+ EEA++A+ EMNG+++ SKP+
Sbjct: 305 DEEKLRKAFSSFGSIIRVKVMQEE-GRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVN 363
Query: 394 VALAQR 399
+ALAQR
Sbjct: 364 IALAQR 369
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 163/296 (55%), Gaps = 16/296 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + + S GY +V F + A+ A+D
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDVIQGQSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ +GFV+F + A R++E +NG D +VG + + +RE EL+
Sbjct: 126 SSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A +F N+Y+KN D + D+KLKE FS +G I S KVM D +G S+G GF
Sbjct: 185 K--------ASEF--TNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRM 422
V+F T E A +A+ +NG+ + + ++V AQ+K ER+A L+ F Q + R+
Sbjct: 235 VSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRV 290
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 182/366 (49%), Positives = 251/366 (68%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLYVGDL V + L+ F+ +G V+S+R+CRDL T+RSLGY YVN+ +A
Sbjct: 6 KYRQASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ALD +NF + GK IR+M+S RD +RKSG GN+FIKNL KSIDNK L++ FS FG IL
Sbjct: 66 KALDTMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKIL 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV +D G SRGY FV F ++ +A AI+ +NG LL ++FVGPF +++R++
Sbjct: 126 SSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQN 184
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN + ++ LK+IF FG I S VM D+ G+SK FGFV+FD + A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQ 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+VE +NGK + +VG+AQKK ER+ ELK FEQ +E +F G+ LY+KNLDDSI
Sbjct: 245 RAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L+ FS FG+I+ KVM++ G S+G G + FS+ EEA+KA+ EMNG+++ SK L
Sbjct: 305 DDERLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLN 363
Query: 394 VALAQR 399
+ALAQR
Sbjct: 364 IALAQR 369
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + Q S GY +V F + A+ A+D
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDMIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D D S+ + FV+F A R++EA+NG +VG + + +R+ EL+
Sbjct: 126 SSKVMSD-DAGSRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A++F N+Y+KN D + D++LKE+FS FG I S KVM D G S+G GF
Sbjct: 185 K--------ANEFT--NVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F + E A +A+ MNGK + +PL+V AQ+K ER+A L+ F QM+
Sbjct: 235 VSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMK 283
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+F LY+ +LD S++D +L F+ G + V+V ++ RS G+G + +++ EA
Sbjct: 288 RRFRGVKLYIKNLDDSIDDERLRREFSSFGSISRVKVMKEEG--RSKGFGLICFSSPEEA 345
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E+N L K + I + R
Sbjct: 346 TKAMVEMNGRILGSKSLNIALAQR 369
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 178/368 (48%), Positives = 257/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL + L+ F+ G V+S+R+CRDL+TR+ LGY YVN+ +
Sbjct: 4 AAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIR+M+S RD +R+SG GN+F+KNLD+S+DNK L++ FS FG
Sbjct: 64 AQRALDTMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F ++ +A AI+++NG ++ND+ VFV PF +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN + ++ L+ +F +G S VM D+ GKSK FGFV+F+ +
Sbjct: 183 RSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+VE +NGK + + +VG+AQKK ER+ ELK FEQ KE + +G+ LYVKNLDD
Sbjct: 243 AKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
++ D++L++ FS FG+IT KVM++ G SRG G + FS+ EEA+KALTEMNG+++ SK
Sbjct: 303 TVDDEQLRKEFSSFGSITRVKVMKE-EGYSRGFGLICFSSPEEAAKALTEMNGRVLGSKA 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 156/289 (53%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186
++++ +L L FS G +LS ++ D + Q GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + L +R++ ++ NV+VKNL + L + F FG I
Sbjct: 70 TMNFDVIKGRPIR----LMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G SK + FV+F A ++E +NGK +D+ +V + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRS 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ A +F N+Y+KN D + D++L+ +FS +G S KVM D +G S+G GF
Sbjct: 185 R--------ASEF--TNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F + E A +A+ EMNGK + + ++V AQ+K ER+A L+ F QM+
Sbjct: 235 VSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMK 283
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 26/208 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD A + + +VNF
Sbjct: 2 NAAAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG---KFEQSLKETADKFEGL-NLY 325
DA R+++ +N FD +KG + S ++ + G+ N++
Sbjct: 62 ADAQRALDTMN---FD-----------------VIKGRPIRLMWSQRDACLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
VKNLD S+ + L E FS FG I S KVM D G S+G FV F + A+ A+ +MNGK
Sbjct: 102 VKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
++ +P++VA + +++R A L+++ S+
Sbjct: 161 VINDRPVFVAPFKPRKDREAELRSRASE 188
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 360 bits (924), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 184/379 (48%), Positives = 252/379 (66%), Gaps = 36/379 (9%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F++ G ++S+RVCRD+ TRRS Y YVN+ +A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++R+SG
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSG------------------------------ 97
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
V D G S+GYGFV F+ E+A+ AI+K+NG LLND++VFVG F ++ERE+ A
Sbjct: 98 --VVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 154
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 155 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 214
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K YVG+AQKK ER+ ELK KFEQ ++ +++ +NLYVKNLDD I
Sbjct: 215 AVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 274
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 275 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 334 ALAQRKEERQAHLTNEYMQ 352
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 181/367 (49%), Positives = 254/367 (69%), Gaps = 4/367 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +Q+RE+
Sbjct: 124 ILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAEL 182
Query: 214 DK--TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F N+Y+KN + + L+++F ++G S VM D+ GKSK FGFV+F +
Sbjct: 183 QNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G+ LY+KNLDD
Sbjct: 243 AQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ EEA++A+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATRAMTEMNGRILGSKP 361
Query: 392 LYVALAQ 398
L +ALAQ
Sbjct: 362 LNIALAQ 368
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 160/291 (54%), Gaps = 16/291 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N + K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDTIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + A R++E +NG D +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A++F N+Y+KN D + D +L+E+FS++G S KVM D G S+G GF
Sbjct: 185 K--------ANEFT--NIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
V+F + E A KA+ EMNGK + + L+V AQ+K ER+A L+ F Q +
Sbjct: 235 VSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQE 285
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L K F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------TIKGKSIRLMWSQRDAYLRKSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G SRG FV F A +A+ EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGA 160
Query: 386 MVVSKPLYVALAQRKEERRARLQ 408
++ L+V + +++R A LQ
Sbjct: 161 LLKDCRLFVGRFKNRQDREAELQ 183
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 183/395 (46%), Positives = 265/395 (67%), Gaps = 6/395 (1%)
Query: 9 QAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68
+A V + S G A G V A ++ SLYVGDL + L+ F+ G V+S
Sbjct: 91 RAEFRVGPRRSVQEAGSARGGEVSVAAKYRLASLYVGDLHADATEDLLFRKFSXAGPVLS 150
Query: 69 VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG 128
+R+CRD++TRR LGY YVN+ +A +ALD +NF + GKPIR+M+S RD +RKSG G
Sbjct: 151 IRICRDVATRRPLGYAYVNFLRPADAQKALDTMNFDAVEGKPIRLMWSQRDACLRKSGVG 210
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+ IKNLD+S+DNK L++ FS FG ILS KV +D G S+GY FV F ++ +A AI ++
Sbjct: 211 NVIIKNLDRSVDNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEM 269
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTR---FNNVYVKNLSETTTEDDLKKIFGEFGII 245
NG ++ D+QV V PF +++RE+ +TR F NVYVKN E ++ L+ +F ++G
Sbjct: 270 NGKVIRDRQVLVAPFRSRRDREAEL-RTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRT 328
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S VM D+ GKSK FGFV+FD + A ++VE +NGK + + +VG+AQKK ER+ ELK
Sbjct: 329 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELK 388
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
FE+ ++ A + +G+ LY+KNLDD++ DD+L+ FS FG+I+ KVM + G +G G
Sbjct: 389 QVFEELKRDGARRCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKVMEE-EGQRKGFG 447
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
V FS+ EEA+KA+T+MNG+++ SKPL +ALA+R+
Sbjct: 448 LVCFSSPEEAAKAMTQMNGRVLGSKPLNIALAKRQ 482
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 153/288 (53%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L L FS G +LS ++ D + + GY +V F A+ A+D
Sbjct: 123 SLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALDT 182
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + K + L +R++ K+ NV +KNL + L + F FG I S
Sbjct: 183 MNFDAVEGKPIR----LMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILS 238
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F A +++ +NGK D++ V + + +RE EL+ +
Sbjct: 239 SKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTR 297
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E N+YVKN + + D++L+ +FS++G S KVM D +G S+G GFV
Sbjct: 298 TS----------EFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFV 347
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNGK + + ++V AQ+KEER+A L+ F +++
Sbjct: 348 SFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELK 395
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 190/426 (44%), Positives = 270/426 (63%), Gaps = 53/426 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
++QF S LY GDL V ++ LY++FN +G V S+RVCRD TR+SLGY Y+N++ +
Sbjct: 44 SQQFAS--LYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVAD 101
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD LN++P+ G+P R+M+S+RDP +R+SGAGN+++KNLD++IDNKAL+DTFS FGN
Sbjct: 102 AERALDTLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGN 161
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA G+SRG+GFV F+++ESA++AI KLNGM + +K V+V PF + ER
Sbjct: 162 ILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGT 221
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
K F NVY+K++ + E+ +K+ FG FG ITS AV D G+ F FVN+ + + A
Sbjct: 222 PKN-FTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQAR 278
Query: 274 RSVEALNGKKFDDKE--------------------------------------------- 288
+VE ++GK ++E
Sbjct: 279 AAVEEMDGKDVRNEEEKAADRAQREREREERKAAREAAKAEGREDGDDVESDDDDEEPET 338
Query: 289 --WYVGKAQKKYEREMELKGKFEQS-LKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345
YV +AQ K ER LK +F S + +F G+NLYVKNL + + D +LK++F F
Sbjct: 339 SHLYVARAQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPF 398
Query: 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
GT+TS KVM D G+SRG GFV FST EEA+KA+T+M+ K++ KPLYV + +++E+R
Sbjct: 399 GTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLE 458
Query: 406 RLQAQF 411
RLQ ++
Sbjct: 459 RLQQRY 464
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/304 (54%), Positives = 229/304 (75%), Gaps = 3/304 (0%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T + G+P RIM+
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV +
Sbjct: 62 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHY 121
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTED 233
+ E+A +AI +NGMLLN+K+VFVG + K++R+S + K F N+YVKN+ + T++
Sbjct: 122 ETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE 181
Query: 234 DLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
+ + +F ++G ITS + RD + GKS+ FGFVNF D + A+ +VE LN + ++ YVG
Sbjct: 182 EFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVG 241
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS +G ITS K
Sbjct: 242 RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAK 301
Query: 353 VMRD 356
VMR+
Sbjct: 302 VMRE 305
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 63/394 (15%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 69 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAA 127
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
T A+ +N LN K + + + + +D + K+ NI++KN+++ + ++ F
Sbjct: 128 TNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALF 187
Query: 149 STFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
+G+I S ++ D+ G+SRG+GFV F + E+A +A++ LN L ++++VG +K
Sbjct: 188 EKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKH 247
Query: 208 ERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
ERE A K + N+Y+KNLS+ ++ L+++F +G ITS VMR+A
Sbjct: 248 EREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREAT 307
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
+ P ++ + EA DKE G+A +K E E K T
Sbjct: 308 AEV----------PTESDKDKEA-------DKEKAKGEAGEKTEEGPEGK---------T 341
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
DK E + + K L G S+G GFV FS +EA
Sbjct: 342 DDKSEEKTEEKTEGKTEGAKPEKKHL-----------------GKSKGFGFVCFSNPDEA 384
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
SKA+TEMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 385 SKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEA 418
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 47/286 (16%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +++ V D + LF + G + S + RD T +S G+G+VN++ A+ A++
Sbjct: 167 TNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVE 226
Query: 100 ELNFTPLNGKPIRIMYSY----RDPTIRKSGAG------------NIFIKNLDKSIDNKA 143
LN L G+ + + + R+ +RK N++IKNL ID++
Sbjct: 227 GLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 286
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS++GNI S KV ++ + V ++++ ++ +K G G
Sbjct: 287 LRELFSSYGNITSAKVMREATAE------VPTESDKDKEADKEKAKGE--------AGEK 332
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+ T DK+ + + K + GKSK FGF
Sbjct: 333 TEEGPEGKTDDKSEEKTEEKTEGKTEGAKPEKKHL-----------------GKSKGFGF 375
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V F +PD+A+++V +N + K YV AQ+K R+ +L+ +
Sbjct: 376 VCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQ 421
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 21/182 (11%)
Query: 235 LKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293
L ++F G + S V RDA +S + +VN+++ D R++E LN + +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
+Q+ + +L++T N+++KNLD +I + L + F+ FG I SCKV
Sbjct: 62 SQR------------DPALRKTGQG----NVFIKNLDTAIDNKALHDTFAAFGNILSCKV 105
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+D G S+G GFV + TAE A+ A+ +NG ++ K ++V K++R Q++F +
Sbjct: 106 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDR----QSKFEE 161
Query: 414 MR 415
M+
Sbjct: 162 MK 163
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 190/426 (44%), Positives = 270/426 (63%), Gaps = 53/426 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
++QF S LY GDL V ++ LY++FN +G V S+RVCRD TR+SLGY Y+N++ +
Sbjct: 44 SQQFAS--LYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVAD 101
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD LN++P+ G+P R+M+S+RDP +R+SGAGN+++KNLD++IDNKAL+DTFS FGN
Sbjct: 102 AERALDTLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGN 161
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA G+SRG+GFV F+++ESA++AI KLNGM + +K V+V PF + ER
Sbjct: 162 ILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGT 221
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
K F NVY+K++ + E+ +K+ FG FG ITS AV D G+ F FVN+ + + A
Sbjct: 222 PKN-FTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQAR 278
Query: 274 RSVEALNGKKFDDKE--------------------------------------------- 288
+VE ++GK ++E
Sbjct: 279 AAVEEMDGKDVRNEEEKAADRAQREREREERKAAREAAKAEGREEGDDVESDDDDEEPET 338
Query: 289 --WYVGKAQKKYEREMELKGKFEQS-LKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345
YV +AQ K ER LK +F S + +F G+NLYVKNL + + D +LK++F F
Sbjct: 339 SHLYVARAQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPF 398
Query: 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
GT+TS KVM D G+SRG GFV FST EEA+KA+T+M+ K++ KPLYV + +++E+R
Sbjct: 399 GTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLE 458
Query: 406 RLQAQF 411
RLQ ++
Sbjct: 459 RLQQRY 464
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 183/406 (45%), Positives = 266/406 (65%), Gaps = 4/406 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+ SLYVGDL SV + LYD F + + SVR+C+D S+ RSL YGY N+ + +A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++ N + LNGK IR+M+S R P R++G GN+F+KNL +S+ N L D F FGNI+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVAT G+SRGYGFVQF+ E++A +AI LN ++ DK+++VG F++K +R +K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEK-- 199
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL +ED L++ F EFG I S A+ +D + + + FVNFD+P+DA R+ E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG KF K YVG+AQKK ERE L+ +F++ +E + N+YVKN++ ++++++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+ GTITS K+M D G S+G GFV FST EEA A+ +G+M KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 398 QRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPP 443
Q+KE+R+ +LQ QF + V PG L+Y P
Sbjct: 380 QKKEDRKMQLQVQFGNRVE--ARKSSSSASVNPGTYAPLYYTNTHP 423
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L SV ++ L D+F + G +VS +V L +S GYG+V +
Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQED 163
Query: 93 EATRALDELNFTPLNGKPIRI--MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A A+ LN T + K I + D + N+++KNLD + L + F+
Sbjct: 164 AAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE 223
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I+S +A D RGY FV FDN E A+ A + +NG K ++VG +K ERE
Sbjct: 224 FGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Query: 211 STADK------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
+ + +N+YVKN++ TE++L+K F + G ITST +M D GKS
Sbjct: 284 QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F P++A +V+ +G+ F K YV AQKK +R+M+L+ +F
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 194/419 (46%), Positives = 269/419 (64%), Gaps = 8/419 (1%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
GD R +S LYVGDLD V + L +F+ MG + +V +CR T RSL YGYVN+
Sbjct: 13 GDPRPRLS--LYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRP 70
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
++A +AL LN T L GK +RIM+ R+P RKSG GN+++KNLD SID+ L FS F
Sbjct: 71 YDAYKALSNLNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKF 130
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G ILSCKV + G+S+GYGFVQFD+E+SA +A L+ +L +K+++V F++K ER +
Sbjct: 131 GTILSCKVVEEH-GKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTT 189
Query: 212 TA--DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
D+ +F N+YVKNLS+ T+D +F FG I S +M+D +GKS+ FGFV+F+ P
Sbjct: 190 ATSYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESP 249
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+DA ++V+ALNG + + + +VG+AQ K ER+ L+ +++ +KF+ NLYVKNL
Sbjct: 250 EDAKKAVDALNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNL 309
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
I +DKL+ELFS G I S KVMR NG SRG GFV FS+ EEA KAL +NG +
Sbjct: 310 ALCIDNDKLQELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQG 369
Query: 390 KPLYVALAQRKEERRARLQAQFS--QMRPP-VGPRMPMYPPVAPGLGQQLFYGQGPPII 445
K LYVA+AQ K +R+ LQ FS Q +PP + + PP++P Y Q P +
Sbjct: 370 KSLYVAMAQCKRDRQLALQTYFSVPQSQPPYLSDSSVVPPPISPVYYNFYPYSQQVPFL 428
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 30/305 (9%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 82
N A G+G+ LYV +LD S++ + L LF++ G ++S +V + +S G
Sbjct: 98 NPCARKSGIGN--------LYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEHG--KSKG 147
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNL 135
YG+V +++ A A L+ T L K + + + + R + N+++KNL
Sbjct: 148 YGFVQFDSEDSALAARTALHDTMLKEKKLYVS-RFVKKSERTTATSYDELKFTNLYVKNL 206
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
K + A H+ FS FG I+S + D G+SRG+GFV F++ E AK A+D LNG L
Sbjct: 207 SKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLES 266
Query: 196 KQVFVGPFLRKQERE------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+ +FVG K ER+ + +K + +N+YVKNL+ D L+++F G
Sbjct: 267 RTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKLQELFSCSG 326
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S VMR +G S+ FGFV F P++A +++ ALNG F K YV AQ K +R++
Sbjct: 327 KIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDRQLA 386
Query: 304 LKGKF 308
L+ F
Sbjct: 387 LQTYF 391
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR-DPNGISRGSGFVAF 369
SLK D L+LYV +LD +++ L+ +FS G I + + R G S G+V F
Sbjct: 8 SLKLPGDPRPRLSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNF 67
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQR 399
+A KAL+ +N + K + + QR
Sbjct: 68 YRPYDAYKALSNLNHTYLKGKLMRIMWCQR 97
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/422 (47%), Positives = 260/422 (61%), Gaps = 41/422 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ + D+L
Sbjct: 251 MNGKEVSGRLLYAGRAQKRMERQNELKRRFEQ----------------------MKQDRL 288
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ G C P G + S A+ A+TEMNG++V +KPLYVALAQ
Sbjct: 289 RRYQLSRGP-AQCWAW--PVGRREAAQPQEPSFPTPAALAVTEMNGRIVGTKPLYVALAQ 345
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----PRMPMYPPVAPGLGQQLFYGQGPPIIP 446
RKEER+A L Q+ Q MR P +G P P V Q +YG G P+ P
Sbjct: 346 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCG-PVTP 404
Query: 447 PQ 448
Q
Sbjct: 405 TQ 406
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 160/296 (54%), Gaps = 20/296 (6%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEE 179
SG+G ++++ +L + L++ FS G ILS +V D + +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N +L + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG I S V D G S+ FGFV+F+ + A +++ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
RE EL A E N+YVKNL + + L++LFS+FG + S KVMRD +G
Sbjct: 179 REAELG----------ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
SR GFV F EEA KA+ MNGK V + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQMK 284
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 19/210 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF-G 152
A +A+ +N ++G R++Y+ R ++ N + ++ ++ S
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGR--AQKRMERQNELKRRFEQMKQDRLRRYQLSRGPA 298
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+ V Q + F A A+ ++NG ++ K ++V RK+ER
Sbjct: 299 QCWAWPVGRREAAQPQEPSF-----PTPAALAVTEMNGRIVGTKPLYVALAQRKEER--- 350
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
K N Y++ LS T + + G F
Sbjct: 351 --KAILTNQYMQRLSTMRTLSN--PLLGSF 376
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/398 (47%), Positives = 259/398 (65%), Gaps = 21/398 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL ++ LYD F+Q G V+S+RVCRD+ TRRSLGY YVN+ +A RA+D
Sbjct: 12 SLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L+ + S K + K FS FGNILSCKV
Sbjct: 72 MNFIQLSVNLASAISSS---------------KTWTRLSTTKCCTIPFSAFGNILSCKVN 116
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
+ G+S+GYGFV F+ EE+A AI+KL+GML+NDK+VFVG F + ER D+ + F
Sbjct: 117 VNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQF 176
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV++KNL + L ++FGE G + S A+ D +GKS+ FGFV+F+ + A + VE
Sbjct: 177 TNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEK 236
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
L+ K+F+ K+ +VG+AQKK ER+ ELK KFE+ E +++G+NLYVKNLDDSI+DD L
Sbjct: 237 LHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDIL 296
Query: 339 KELFSEFGTITSCKVMRDPN---GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+E F+ +G ITS KVM D + S+G GFV F++AEEA+KA+TEMNG+++ SKPLYVA
Sbjct: 297 REHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVA 356
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLG 433
LAQRK+ER+A LQ Q+ Q R G R+ +P P G
Sbjct: 357 LAQRKDERKAHLQQQYMQ-RVTTGMRLQAFPTNQPQYG 393
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 186/343 (54%), Positives = 246/343 (71%), Gaps = 10/343 (2%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++ LN+ L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVA D+ G S+GYGFVQF ++ S +A + NG L+ ++ + V PF+ + + DK+R
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ----WDKSR 116
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL ET T+ DLK++FGEFG ITS VM+D +GKS+ FGFVNF+ + A ++
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISD 335
E +NG D+KE +VG+AQ+K R +LK KFE + + +G+NLYVKNLDDS+ +
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+ELFSEFGTITSCKVM NGIS+G GFV FST+EEASKA+ +MNGKMV +KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYPP-VAPG--LGQQ 435
LAQ KE+ + LQ QF+ PP + P++ VAP L QQ
Sbjct: 297 LAQCKEQHKLHLQTQFNN-PPPSPHQQPIFSQVVAPATMLSQQ 338
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 159/284 (55%), Gaps = 19/284 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTACNF 90
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R + N+++KNL ++ + L F FG I S V
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRF 218
D G+SR +GFV F+ E+A +AI+K+NG+++++K++ VG RK R T D K +F
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR--TEDLKAKF 208
Query: 219 N--------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
N+YVKNL ++ L+++F EFG ITS VM ++G SK GFV
Sbjct: 209 ELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFV 268
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
F ++A++++ +NGK +K YV AQ K + ++ L+ +F
Sbjct: 269 EFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 19/200 (9%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D+ L LF + G++ S V +D +S +G+VN+ A A A
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTA 175
Query: 98 LDELNFTPLNGKPIRIMYSYR--------------DPTIR--KSGAG-NIFIKNLDKSID 140
++++N ++ K + + + R + IR K+ G N+++KNLD S+D
Sbjct: 176 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 235
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
N L + FS FG I SCKV S G S+G GFV+F E A A+ K+NG ++ +K ++V
Sbjct: 236 NTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Query: 201 GPFLRKQERESTADKTRFNN 220
+ +E+ +T+FNN
Sbjct: 296 S-LAQCKEQHKLHLQTQFNN 314
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA 90
+ D + +LYV +LD SV++++L +LF++ G + S +V S S G G+V ++
Sbjct: 214 IRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFST 272
Query: 91 AHEATRALDELNFTPLNGKPIRI 113
+ EA++A+ ++N + KPI +
Sbjct: 273 SEEASKAMLKMNGKMVGNKPIYV 295
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 26/208 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
++ ++V + +++R A L+++ S+
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASE 188
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 26/208 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
++ ++V + +++R A L+++ S+
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASE 188
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 26/213 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EMNGK++ ++V + +++R A L+++ S+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 26/213 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EMNGK++ ++V + +++R A L+++ S+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 251/366 (68%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLYVGDL V + L+ FN +G V+S+R+CRDL TRRSLGY YVN+ +A
Sbjct: 6 KYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ LD +NF + GK IR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG IL
Sbjct: 66 KVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKIL 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV +D G SRGY FV F ++ +A AI+++NG LL + ++FVGPF ++ERE+
Sbjct: 126 SSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQN 184
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN + ++ LK++F ++G I S VM D+ GKSK FGFV+FD + A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQ 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+VE +NGK + +VG+AQKK ER+ ELK FEQ +E + G+ LY+KNLD++I
Sbjct: 245 RAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDETI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+++L+ FS FG+++ KVM + G S+G G + FS EEA+KA+ EMNG+++ SK +
Sbjct: 305 DEEQLRRAFSSFGSMSRVKVM-EEEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAIN 363
Query: 394 VALAQR 399
+ALAQR
Sbjct: 364 IALAQR 369
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 160/289 (55%), Gaps = 16/289 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L F+ G +LS ++ D + + S GY +V F N A+ +D
Sbjct: 10 ASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL + L + F FG I
Sbjct: 70 TMNFDMIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F A R++E +NG + +VG + + ERE EL+
Sbjct: 126 SSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A++F N+Y+KN D + D++LKE+FS++G I S KVM D +G S+G GF
Sbjct: 185 K--------ANEF--TNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V+F T E A +A+ MNGK + + ++V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLK 283
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
S K R ++YV +L TED L + F G + S + RD +S + +VNF +
Sbjct: 2 SVDAKYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKN 328
DA + ++ +N FD Q K R M S ++ + G+ N+++KN
Sbjct: 62 ADAQKVLDTMN---FD-------MIQGKSIRLM-------WSQRDAYLRKSGIGNVFIKN 104
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
LD SI + L E FS FG I S KVM D G SRG FV F + A +A+ EMNG ++
Sbjct: 105 LDRSIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLK 163
Query: 389 SKPLYVALAQRKEERRARLQ 408
+ L+V + ++ER A LQ
Sbjct: 164 NCRLFVGPFKNRKEREAELQ 183
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDMIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 26/213 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FD-----------------MIKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EMNGK++ ++V + +++R A L+++ S+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 61 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 120
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 121 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 180
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 181 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 239
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 240 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 299
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 300 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 359
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 360 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 418
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 419 LSIALAQR 426
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 68 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 127
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 128 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 183
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 184 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 242
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 243 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 292
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 293 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 340
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 26/213 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 54 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 113
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 114 NFLQLADAQKALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSG 153
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 154 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 212
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EMNGK++ ++V + +++R A L+++ S+
Sbjct: 213 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 245
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 27/213 (12%)
Query: 207 QERE-STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
++RE + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDREMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EMNGK++ ++V + +++R A L+++ S+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 182 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 361 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 419
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 420 LSIALAQR 427
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 26/213 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
K + + A K R ++YV +L TED L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EG 321
NF DA ++++ +N FD +KGK + + D + G
Sbjct: 115 NFLQLADAQKALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSG 154
Query: 322 L-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
+ N+++KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
EMNGK++ ++V + +++R A L+++ S+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/362 (51%), Positives = 246/362 (67%), Gaps = 15/362 (4%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++ LNF L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSC
Sbjct: 1 MEMLNFYKLKGKPMRIMFSERDPSKRLSGRGNVFVKNLDESIDNKQLSDMFSAFGKVLSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL-RKQERESTADKT 216
KV D+ G S+GYGFVQF +E S A + NG L+ ++ + V PF+ R+Q ES
Sbjct: 61 KVVRDASGVSKGYGFVQFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRRQWDESRV--- 117
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL+ETTT+DDLK IF EFG ITS VM+D +GKS+ FGFVNF+ + A ++
Sbjct: 118 -FTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAI 176
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISD 335
+ +NG D+KE +VG+AQ+K R +LK F+ + +K +G NLYVKNLD S+ +
Sbjct: 177 DKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDN 236
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+ELFSEFGTI SCKVM PN IS+G GFV FST+EEASKA+ +MNGK+V +KP+YV+
Sbjct: 237 TKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVS 296
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQG-PPIIPP---QVIY 451
LAQ KEE + L QF+ + P + +AP Q + Q PP+ P Q +Y
Sbjct: 297 LAQCKEEHKLHLHTQFNNL-----PWNVVSSTIAPSPHQHPIFSQAWPPMSIPNTMQRVY 351
Query: 452 SF 453
+F
Sbjct: 352 NF 353
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 151/282 (53%), Gaps = 15/282 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 32 NVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASG-VSKGYGFVQFYSELSVNIACNV 90
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R N+++KNL ++ + L F FG I S V
Sbjct: 91 RNGTLIRNQHIHVSPFVSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVV 150
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD----- 214
D G+SR +GFV F+ E+A +AIDK+NG ++++K++ VG RK+ R
Sbjct: 151 MKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKL 210
Query: 215 -------KTRF-NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266
KTR N+YVKNL + L+++F EFG I S VM + SK GFV F
Sbjct: 211 EKIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEF 270
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
++A++++ +NGK +K YV AQ K E ++ L +F
Sbjct: 271 STSEEASKAMLKMNGKVVGNKPIYVSLAQCKEEHKLHLHTQF 312
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 19/209 (9%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D L +F + G++ S V +D + + +G+VN+ A A A
Sbjct: 117 VFTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRM-FGFVNFEKAEAAVTA 175
Query: 98 LDELNFTPLNGKPIRIMYSYRDPT-----------------IRKSGAGNIFIKNLDKSID 140
+D++N T ++ K + + + R ++ N+++KNLD S+D
Sbjct: 176 IDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVD 235
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
N L + FS FG I+SCKV S+G GFV+F E A A+ K+NG ++ +K ++V
Sbjct: 236 NTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYV 295
Query: 201 GPFLRKQERESTADKTRFNNVYVKNLSET 229
+ +E T+FNN+ +S T
Sbjct: 296 S-LAQCKEEHKLHLHTQFNNLPWNVVSST 323
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 182/385 (47%), Positives = 259/385 (67%), Gaps = 7/385 (1%)
Query: 19 SPATNGIANNGG---VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
S ++ G A++G + A ++ SLYVGDL V + L+ F+ G V+S+R+CRD
Sbjct: 112 SKSSRGQAHSGKDKEMSVAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQ 171
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVN+ +A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNL
Sbjct: 172 VTRRSLGYAYVNFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNL 231
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
DKSIDNK L++ FS FG ILS KV +D G S+GY FV F N+ +A AI+++NG LL
Sbjct: 232 DKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKS 290
Query: 196 KQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
+VFVG F +++RE+ + + F N+Y+KN ++ LK +F ++G S VM D
Sbjct: 291 CKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD 350
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+ GKSK FGFV+FD + A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +
Sbjct: 351 SRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKR 410
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
E ++G+ LYVKNLDD+I D+KL+ FS FG+I KVM+ G S+G GF+ FS+ E
Sbjct: 411 ERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICFSSLE 469
Query: 374 EASKALTEMNGKMVVSKPLYVALAQ 398
+A+KA+ EMNG+ + SKP+ +ALAQ
Sbjct: 470 DATKAMIEMNGRFLGSKPISIALAQ 494
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 161/288 (55%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 137 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 196
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 197 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 252
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NG+ + +VG+ + + +RE EL+ K
Sbjct: 253 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSK 311
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D G S+G GFV
Sbjct: 312 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFV 361
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 362 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 409
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/367 (48%), Positives = 258/367 (70%), Gaps = 4/367 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+++G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK+L++ FS FG
Sbjct: 64 AQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G S+GY FV F ++ +A AI+++NG L D +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAEL 182
Query: 214 --DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ F NVY+KN + ++ L+++F +G I S VM ++ GKS+ FGFV+FD +
Sbjct: 183 RNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ + + +VG+AQKK ER+ ELK FEQ KE +G LY+KNLD+
Sbjct: 243 ARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDE 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+I+ KVM++ G S+G G + FS++E+A++A+T MNG+++ SKP
Sbjct: 303 NIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSSEDAARAMTVMNGRILGSKP 361
Query: 392 LYVALAQ 398
L +ALAQ
Sbjct: 362 LNIALAQ 368
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 163/291 (56%), Gaps = 16/291 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 10 ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDVVKGKAIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G SK + FV+F A R++E +NGK D + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRN 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A +F N+Y+KN D + D++L+E+FS +G I S KVM + G SRG GF
Sbjct: 185 K--------ASEF--TNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
V+F + E A KA+ EMNGK V +P++V AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKE 285
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 26/208 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L K F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------VVKGKAIRLMWSQRDAYLRKSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F + A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
+ ++V + +++R A L+ + S+
Sbjct: 161 FLKDCKVFVGRFKSRKDREAELRNKASE 188
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 247/362 (68%), Gaps = 4/362 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V + L+ F+ G V+S+R+CRD TRRSLGY YVN+ +A +ALD
Sbjct: 287 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALD 346
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG ILS KV
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKV 406
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+D G S+GY FV F N+ +A AI+++NG LL +VFVG F +Q+RE+ + +
Sbjct: 407 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASE 465
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD + A ++VE
Sbjct: 466 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 525
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG+ + + +V +AQKK ER+ ELK FEQ E + + LYVKNLDD+I D+K
Sbjct: 526 EMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEK 585
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+I+ KVM++ G S+G G + FS+ E+A KA+TEMNG+++ SKPL +ALA
Sbjct: 586 LRKEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALA 644
Query: 398 QR 399
QR
Sbjct: 645 QR 646
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FS G +LS ++ D L + S GY +V F + A+ A+D
Sbjct: 288 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDT 347
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 348 MNFDVIQGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILS 403
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 404 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSK 462
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 463 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 512
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++VA AQ+K ER+A L+ F Q++
Sbjct: 513 SFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLK 560
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 20/201 (9%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAA 273
K R ++YV +L TED L + F G + S + RD +S + +VNF DA
Sbjct: 283 KYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQ 342
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDS 332
++++ +N FD Q K R M S ++ + G+ N+++KNLD S
Sbjct: 343 KALDTMN---FD-------VIQGKSIRLM-------WSQRDAYLRRSGIGNVFIKNLDKS 385
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK++ +
Sbjct: 386 IDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKV 444
Query: 393 YVALAQRKEERRARLQAQFSQ 413
+V + +++R A L+++ S+
Sbjct: 445 FVGRFKSRQDREAELRSKASE 465
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 178/367 (48%), Positives = 249/367 (67%), Gaps = 4/367 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F N+Y+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E ++G+ LYVKNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I KVM+ G S+G GF+ FS+ E+A+KA+ EMNG + SKP
Sbjct: 303 TIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICFSSLEDATKAMIEMNGCFLGSKP 361
Query: 392 LYVALAQ 398
+ +ALAQ
Sbjct: 362 ISIALAQ 368
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 166/301 (55%), Gaps = 19/301 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPP 427
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++ R+ Y
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKR---ERIRGYQG 292
Query: 428 V 428
V
Sbjct: 293 V 293
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 26/208 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
S A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 SVAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 TDAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
++ S ++V + +++R A L+++ S+
Sbjct: 161 LLKSCKVFVGRFKNRKDREAELRSKASE 188
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 230/317 (72%), Gaps = 4/317 (1%)
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF ++G+P+RIM+S RDP R++G GNIFIKNLD+ IDNK+++DTFS FGNILSCKVA
Sbjct: 1 MNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 60
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRF 218
TD G S+GYGFV F+ E SA++AI+K+NGMLL+DK+V+VG F + +R E ++
Sbjct: 61 TDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKY 120
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NV+VKN E ++ L +F +FG ITS VM DA GK K FGFV F D D A ++VE
Sbjct: 121 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 180
Query: 279 LNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LN + D + V +AQKK ER ELK K+E +E +++G+NLYVKN+++ ++DD
Sbjct: 181 LNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDD 240
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L++ FS FGTITS KVM D NG S+G GFV F EEA+ A+T+MN KM+ +KPLYVAL
Sbjct: 241 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 300
Query: 397 AQRKEERRARLQAQFSQ 413
AQRKE+RRA+L +Q+ Q
Sbjct: 301 AQRKEDRRAQLASQYMQ 317
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 164/299 (54%), Gaps = 21/299 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ + ++++ +LD +++ +YD F+ G ++S +V D S GYG+V++ H
Sbjct: 22 ARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHS 80
Query: 94 ATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDT 147
A A++++N L+ K + + + R +++ G N+F+KN + +D + L
Sbjct: 81 AQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAM 140
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLR 205
FS FG I S V TD+ G+ +G+GFV F ++++A A++KLN +L D ++ V +
Sbjct: 141 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 200
Query: 206 KQERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K ER + + R+ N+YVKN+ E +D L+ F FG ITS VM D
Sbjct: 201 KSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD 260
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+G+SK FGFV F+ P++A +V +N K K YV AQ+K +R +L ++ Q L
Sbjct: 261 ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 319
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 173/349 (49%), Positives = 234/349 (67%), Gaps = 6/349 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +LYVGDL V D+QLY F++ ++S RVC+D +T +SL YGYVN ++ EA RA+
Sbjct: 14 AATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAI 73
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ N + LNGK IR+M+ RD RKSG GN+F+KNL SIDN LHD F +GNILS K
Sbjct: 74 ELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSK 133
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+A G+S+G+G++QFD+EESA AI K+NG + DKQ++VG F+RK ER +F
Sbjct: 134 IARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKF 193
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL TE L + F FG I S A+ +D +G+SK FGFVN+D PDDA R++EA
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEA 253
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKF-EQSLKETADKFEGLNLYVKNLDDSISDDK 337
++G +F K YV +AQKK ERE L F E+ LK G N+YVKN+D S+ D++
Sbjct: 254 MDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHM-----GSNIYVKNIDTSVGDEE 308
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
L++ FS G + S KVMRD G S+G GFV FST EA K+++ NG++
Sbjct: 309 LRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 156/289 (53%), Gaps = 19/289 (6%)
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKS 183
S A +++ +L + + L+ FS F ++S +V DS G+S YG+V + + A
Sbjct: 12 SPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIR 71
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
AI+ N LN K + V R++ A K+ NV+VKNL+ + L +F ++G
Sbjct: 72 AIELKNHSSLNGKVIRVMWL----SRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYG 127
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM- 302
I S+ + R DGKSK FG++ FD + A +++ +NG DK+ YVGK +K ER +
Sbjct: 128 NILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLP 187
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
+L KF NLYVKNLD +++ L E FS FG I S + +D NG S+
Sbjct: 188 DLDAKF-------------TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSK 234
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
G GFV + + ++A +A+ M+G SK LYVA AQ+K ER L F
Sbjct: 235 GFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLF 283
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 142/267 (53%), Gaps = 23/267 (8%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L S+++ L+DLF + G ++S ++ R +S G+GY+ +++
Sbjct: 96 DARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEE 154
Query: 93 EATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG---------NIFIKNLDKSIDNKA 143
A A+ + +NG +R Y IRKS N+++KNLD + K
Sbjct: 155 SANVAIQK-----MNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKH 209
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS+FG I+S + D GQS+G+GFV +D+ + A+ A++ ++G K ++V
Sbjct: 210 LGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARA 269
Query: 204 LRKQERESTAD--------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
+K ERE K +N+YVKN+ + +++L+ F G + S VMRD
Sbjct: 270 QKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDK 329
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGK 282
G SK FGFV F +A +S+ NG+
Sbjct: 330 GTSKGFGFVCFSTVVEAFKSMSCFNGE 356
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 179/366 (48%), Positives = 248/366 (67%), Gaps = 4/366 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V + L+ F+ +G V+S+R+CRD TR SLGY YVN+ +A +ALD
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG ILS KV
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
+D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+ + +
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSKASE 188
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD + A ++VE
Sbjct: 189 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG+ + + +V +AQKK ER+ ELK FEQ KE + + LYVKNLDD+I D+K
Sbjct: 249 EMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEK 308
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS FG+I+ KVM++ G S+G G + FS+ E+A KA+TEMNG+++ SKPL +ALA
Sbjct: 309 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALA 367
Query: 398 QRKEER 403
Q E R
Sbjct: 368 QCSELR 373
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 165/291 (56%), Gaps = 16/291 (5%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAKSAID 186
++++ +L + L FST G +LS ++ D + +S GY +V F + A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I
Sbjct: 70 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRS 184
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GF
Sbjct: 185 K--------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
V+F + E A KA+ EMNG+ + + ++VA AQ+K ER+A L+ F Q++
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKE 285
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 26/204 (12%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAA 273
K R ++YV +L TED L + F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQ 65
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLYVKNL 329
++++ +N FD +KGK + + D + G+ N+++KNL
Sbjct: 66 KALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSGIGNVFIKNL 105
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK++
Sbjct: 106 DKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQG 164
Query: 390 KPLYVALAQRKEERRARLQAQFSQ 413
++V + +++R A L+++ S+
Sbjct: 165 CKVFVGRFKSRKDREAELRSKASE 188
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 178/309 (57%), Positives = 231/309 (74%), Gaps = 4/309 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+ +RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+
Sbjct: 77 MNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIV 136
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-F 218
D G SRGYGFV F+ EE+A+ AI+K+NGMLLN K+VFVG F+ ++ER E DK R F
Sbjct: 137 CDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKF 195
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR-DADGKSKCFGFVNFDDPDDAARSVE 277
NNVYVKN SE ++ L+ +F +G I S VM D GK K FGFV+F+DP+ A ++VE
Sbjct: 196 NNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVE 255
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
ALNG K YVG+AQKK ER+ ELK KFE+ E ++++G+NLYVKNLDD+I D++
Sbjct: 256 ALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDER 315
Query: 338 LKELFSEFG 346
L++ F++FG
Sbjct: 316 LRKEFAQFG 324
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 153/291 (52%), Gaps = 19/291 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L + FST G +L +V D + + S GY +V F A+ A+D
Sbjct: 16 ASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N + + + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 76 TMNFDTIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 131
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S ++ D G S+ +GFV+F+ + A ++E +NG + K+ +VG+ + ER
Sbjct: 132 SCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRER------ 184
Query: 307 KFEQSLKETADKFEGLN-LYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGS 364
L+ DK N +YVKN + I+D+ L+++F +G I S KVM D +G +G
Sbjct: 185 -----LEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGF 239
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
GFV+F E A KA+ +NG K LYV AQ+K ER+A L+ +F ++R
Sbjct: 240 GFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIR 290
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 23/226 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD S+++ LYD F+ G ++S + VC + +R GYG+V++ A A++
Sbjct: 105 NVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHGSR---GYGFVHFETEEAARIAIE 161
Query: 100 ELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGN 153
++N LNGK + + + R + G N+++KN + I+++ L D F +G
Sbjct: 162 KVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGK 221
Query: 154 ILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I+S KV TD G+ +G+GFV F++ E+A+ A++ LNG + K ++VG +K ER++
Sbjct: 222 IISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAE 281
Query: 213 ADKT-------RFN-----NVYVKNLSETTTEDDLKKIFGEFGIIT 246
+ R N N+YVKNL + ++ L+K F +FG T
Sbjct: 282 LKEKFERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFGFQT 327
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/288 (59%), Positives = 226/288 (78%), Gaps = 4/288 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+ +D G SRGYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFV 59
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR-FNNVYVKNLSETTT 231
F+ EE+A++AI+K+NGMLLN K+VFVG F+ ++ER E DK + FNNVY+KN SE
Sbjct: 60 HFETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEID 119
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ LK F FG I S VM DGK + FGFV++++P+ A ++V +N K F++K YV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQK+ ER+ ELK KF++ +E ++++G+NLYVKNLDDSI D+KL++ FS FGTITS
Sbjct: 180 GRAQKRAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSA 239
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
KVM + G S+G GFV FS+ EEA+KA+TEMNG+++V+KPLYVALAQR
Sbjct: 240 KVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 155/274 (56%), Gaps = 21/274 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S ++ D R GYG+V++ A A+++
Sbjct: 16 NVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHGSR--GYGFVHFETEEAARNAIEK 73
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R + + G N++IKN + ID++ L F TFG I
Sbjct: 74 VNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETFGKI 133
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-A 213
+S KV T G+ RG+GFV ++ E+A+ A+ ++N +K ++VG ++ ER++
Sbjct: 134 ISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQAELK 193
Query: 214 DK------TRFN-----NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
DK R N N+YVKNL ++ ++ L+K F FG ITS VM + G+SK FG
Sbjct: 194 DKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTEG-GRSKGFG 252
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
FV F P++A ++V +NG+ K YV AQ+
Sbjct: 253 FVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 16/222 (7%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ NV++KNL ++ L F FG I S ++ D G S+ +GFV+F+
Sbjct: 4 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFE 62
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN-LYV 326
+ A ++E +NG + K+ +VG+ + ER L++ DK + N +Y+
Sbjct: 63 TEEAARNAIEKVNGMLLNGKKVFVGRFMNRRER-----------LEQMGDKMKKFNNVYI 111
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KN + I D+KLK F FG I S KVM +G RG GFV++ E A KA+TEMN K
Sbjct: 112 KNFSEEIDDEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKT 171
Query: 387 VVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPV 428
K LYV AQ++ ER+A L+ +F +++ RM Y V
Sbjct: 172 FEEKTLYVGRAQKRAERQAELKDKFDRLKQ---ERMNRYQGV 210
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD S++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 206 RYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTEGG--RSKGFGFVCFSSPEEAT 263
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 264 KAVTEMNGRIIVAKPLYVALAQR 286
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 180/373 (48%), Positives = 251/373 (67%), Gaps = 9/373 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+ C RSLGY YVN+ +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSI-TCHP----RSLGYAYVNFLQLAD 58
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLD+SIDNK L++ FS FG
Sbjct: 59 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 118
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILS KV +D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 119 ILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEF 177
Query: 214 DKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN + ++ LK++F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 178 QNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 237
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A R+VE +NGK + + +VG+AQKK ER+ ELK FEQ E + G LY+KNLD+
Sbjct: 238 AKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDE 297
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+AEEA+KA+TEMNG+++ SKP
Sbjct: 298 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKP 356
Query: 392 LYVALAQRKEERR 404
L +ALAQ+ ER+
Sbjct: 357 LNIALAQKPXERK 369
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 19/290 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FS G +LS SLG Y +V F A+ A+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSITCHPRSLG----YAYVNFLQLADAQKALDT 65
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N L+ K + L +R++ K+ NV++KNL + L + F FG I S
Sbjct: 66 MNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 121
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G S+ + FV+F + A R++E +NG D +VG+ + + +RE E + K
Sbjct: 122 SKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNK 180
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
E N+Y+KN D + D++LKE+FS++G S KVM D +G S+G GFV
Sbjct: 181 ----------AHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFV 230
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
+F + E A +A+ EMNGK + + L+V AQ+K ER+A L+ F Q++
Sbjct: 231 SFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHE 280
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 107/188 (56%), Gaps = 18/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D +L ++F++ G+ +SV+V D S+ +S G+G+V++++ A RA++
Sbjct: 185 TNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKRAVE 243
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N +NG+ + ++ + R+ ++IKNLD++ID++
Sbjct: 244 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEK 303
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L FS+FG+I KV + G+S+G+G + F + E A A+ ++NG +L K + +
Sbjct: 304 LRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALA 362
Query: 204 LRKQERES 211
+ ER++
Sbjct: 363 QKPXERKT 370
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/385 (45%), Positives = 250/385 (64%), Gaps = 22/385 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ H A RA++
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIE 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + K +R+M+ RDP++R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFRRVGDKCVRLMWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADK 215
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 145 MEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALV 203
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T ++ ++ F +FG ITS A +D G + F F NF+ DDA ++
Sbjct: 204 ANFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKF--EQSLKETADKFEGLNLYVKN 328
VEA++ D ++ YV +AQ + ER + L+ K+ QSL G NLYV+N
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSL--------GNNLYVRN 313
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
D + L ELF E+G + SC+VM +G SRG GFV+FS A+EA+ AL EMNG+M+
Sbjct: 314 FDPEFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLN 373
Query: 389 SKPLYVALAQRKEERRARLQAQFSQ 413
KPL V +AQR+++R L+ QF Q
Sbjct: 374 GKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G V S RV S S G+G+V+++ A EA
Sbjct: 302 HQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSESG-ASRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/307 (54%), Positives = 232/307 (75%), Gaps = 5/307 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K+ATD G+S+G+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTT 231
F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+ + N+YVKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++VEALN + + ++ YV
Sbjct: 121 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 180
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+KL+E F+ +GTITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 240
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+AQRK+ RR++L Q
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 300
Query: 412 ---SQMR 415
+QMR
Sbjct: 301 QARNQMR 307
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 155/288 (53%), Gaps = 19/288 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S ++++ +L +++ LYD F+ G ++S ++ D +S G+G+V++ A
Sbjct: 10 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 68
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGAG--NIFIKNLDKSIDNKALHDTF 148
A+D LN LNG+ I + RD + ++ A N+++KN++ ++ + F
Sbjct: 69 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF 128
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
+ FG I+S + D+ G+ +G+GFV ++ E A A++ LN LN ++++VG +K E
Sbjct: 129 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE 188
Query: 209 RESTADKT----RFN--------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
R K R N++VKNL ++ ++ L++ F +G ITS VMR +G
Sbjct: 189 RMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENG 248
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
KSK FGFV F P++A +++ N + K YV AQ+K R +L
Sbjct: 249 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 296
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F G + S +V R +S G+G+V ++ EAT
Sbjct: 207 KYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEAT 265
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 266 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 304
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 173/383 (45%), Positives = 249/383 (65%), Gaps = 18/383 (4%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ A +A++
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + K +R+M+ RDP +R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADK 215
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALV 203
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T +D ++K F +FG ITS A +D G + F F NF+ DDA ++
Sbjct: 204 ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
VEA++ D ++ YV +AQ + ER + L+ K+ Q + G NLYV+N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQH------QALGNNLYVRNFD 315
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L ELF E+G + SC+VM +G+SRG GFV+FS A+EA+ AL EMNG+M+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PL V +AQR+++R L+ QF Q
Sbjct: 376 PLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 144/301 (47%), Gaps = 41/301 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY------------ 88
+++V +L+ V+ L+D+F + G ++S +V +D +S GYG+V++
Sbjct: 114 NVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVK 172
Query: 89 -----NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
+ A E +AL NF N + ++ ++ N++IK + +++
Sbjct: 173 MNGAADHASEDKKALYVANFIRRNARLAALVANF----------TNVYIKQVLPTVNKDV 222
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID-----KLNGMLLNDKQV 198
+ F+ FG I S D G R + F F+ + A A++ ++G+ +++
Sbjct: 223 IEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKL 280
Query: 199 FVGPFLRKQER------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+V + ER + + NN+YV+N T DL ++F E+G + S VM
Sbjct: 281 YVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMV 340
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
G S+ FGFV+F + D+A ++ +NG+ + K V AQ++ +R L+ +F+Q L
Sbjct: 341 SESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQRL 400
Query: 313 K 313
+
Sbjct: 401 Q 401
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G+V S RV S S G+G+V+++ A EA
Sbjct: 302 HQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESG-VSRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 174/385 (45%), Positives = 250/385 (64%), Gaps = 22/385 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ A +A++
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIE 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + K +R+M+ RDP +R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADK 215
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALV 203
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T +++ ++K F +FG ITS A +D G + F F NF+ DDA ++
Sbjct: 204 ANFTNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKF--EQSLKETADKFEGLNLYVKN 328
VEA++ D ++ YV +AQ + ER + L+ K+ QSL G NLYV+N
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSL--------GNNLYVRN 313
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
D + L ELF E+G + SC+VM +G SRG GFV+FS A+EA+ AL EMNG+M+
Sbjct: 314 FDPEFTGADLLELFKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLN 373
Query: 389 SKPLYVALAQRKEERRARLQAQFSQ 413
KPL V +AQR+++R L+ QF Q
Sbjct: 374 GKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G V S RV S S G+G+V+++ A EA
Sbjct: 302 HQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMVSESG-ASRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/307 (54%), Positives = 231/307 (75%), Gaps = 5/307 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K+ATD G+S+G+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTT 231
F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+ + N+YVKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ + +F +FG I S ++ +DADGK K FGFVN+++ +DA ++VEALN + ++ YV
Sbjct: 121 DEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 180
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+KL+E F+ +GTITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSA 240
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+AQRK+ RR++L Q
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 300
Query: 412 ---SQMR 415
+QMR
Sbjct: 301 QARNQMR 307
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 155/288 (53%), Gaps = 19/288 (6%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ S ++++ +L +++ LYD F+ G ++S ++ D +S G+G+V++ A
Sbjct: 10 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAA 68
Query: 95 TRALDELNFTPLNGKPI----RIMYSYRDPTIRKSGAG--NIFIKNLDKSIDNKALHDTF 148
A+D LN LNG+ I + RD + ++ A N+++KN++ ++ D F
Sbjct: 69 KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLF 128
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I+S + D+ G+ +G+GFV ++N E A A++ LN LN ++++VG +K E
Sbjct: 129 IQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNE 188
Query: 209 RESTADKT----RFN--------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
R K R N++VKNL ++ ++ L++ F +G ITS VMR +G
Sbjct: 189 RMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENG 248
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
KSK FGFV F P++A +++ N + K YV AQ+K R +L
Sbjct: 249 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 296
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F G + S +V R +S G+G+V ++ EAT
Sbjct: 207 KYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEAT 265
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 266 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 304
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/383 (44%), Positives = 249/383 (65%), Gaps = 18/383 (4%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ A +A++
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + K +R+M+ RDP +R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADK 215
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALV 203
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T +D ++K F +FG ITS A +D G + F F NF+ DDA ++
Sbjct: 204 ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
VEA++ D ++ YV +AQ + ER + L+ K+ Q + G NLYV+N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQH------QALGNNLYVRNFD 315
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L ELF E+G + SC+VM +G+SRG GFV+FS A+EA+ AL EMNG+M+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PL V +AQR+++R ++ QF Q
Sbjct: 376 PLIVNIAQRRDQRYTIVRLQFQQ 398
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 144/301 (47%), Gaps = 41/301 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY------------ 88
+++V +L+ V+ L+D+F + G ++S +V +D +S GYG+V++
Sbjct: 114 NVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVK 172
Query: 89 -----NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
+ A E +AL NF N + ++ ++ N++IK + +++
Sbjct: 173 MNGAADHASEDKKALYVANFIRRNARLAALVANF----------TNVYIKQVLPTVNKDV 222
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID-----KLNGMLLNDKQV 198
+ F+ FG I S D G R + F F+ + A A++ ++G+ +++
Sbjct: 223 IEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKL 280
Query: 199 FVGPFLRKQER------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+V + ER + + NN+YV+N T DL ++F E+G + S VM
Sbjct: 281 YVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMV 340
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
G S+ FGFV+F + D+A ++ +NG+ + K V AQ++ +R ++ +F+Q L
Sbjct: 341 SESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTIVRLQFQQRL 400
Query: 313 K 313
+
Sbjct: 401 Q 401
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G+V S RV S S G+G+V+++ A EA
Sbjct: 302 HQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESG-VSRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 172/267 (64%), Positives = 214/267 (80%), Gaps = 8/267 (2%)
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML+NDKQV V PF+R+QERE T T+FNNV+VKNL+E TT++DL ++FG FG I+S
Sbjct: 1 GMLINDKQVVVTPFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAV 60
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VMRDA+G SKCFGFVNF + DDAA++VE +NGK F+DKEWYVG+AQKK ERE ELK KFE
Sbjct: 61 VMRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFE 120
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
Q KE +KF+G+NLY+KN+DDSI D+KLKELFS FGT+ SCK+MR P G GSGFVA
Sbjct: 121 QLRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVAL 180
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG--PRM----- 422
S+ +EA +A+ EMNGKMV SKPLYVA+AQRK+ERRA+LQAQF+Q+R V P+M
Sbjct: 181 SSKDEAMRAVNEMNGKMVGSKPLYVAVAQRKDERRAKLQAQFAQLRNVVANVPQMNGSPG 240
Query: 423 PMYPPVAPGLGQQLFYGQGPP-IIPPQ 448
P+YPP P +GQQ++YGQ P ++PPQ
Sbjct: 241 PLYPPRPPAMGQQVYYGQPPHGLLPPQ 267
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 12/194 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+F+KNL + ++ L + F FG I S V D+ G S+ +GFV F N + A A++ +
Sbjct: 31 NVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKNADDAAKAVENI 90
Query: 189 NGMLLNDKQVFVGPFLRKQEREST------------ADKTRFNNVYVKNLSETTTEDDLK 236
NG + NDK+ +VG +K ERE+ +K + N+Y+KN+ ++ ++ LK
Sbjct: 91 NGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKLK 150
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
++F FG + S +MR G+ GFV D+A R+V +NGK K YV AQ+
Sbjct: 151 ELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQR 210
Query: 297 KYEREMELKGKFEQ 310
K ER +L+ +F Q
Sbjct: 211 KDERRAKLQAQFAQ 224
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+++V +L D L ++F G + S V RD + S +G+VN+ A +A +A++
Sbjct: 30 NNVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRD-ANGNSKCFGFVNFKNADDAAKAVE 88
Query: 100 ELNFTPLNGK---------------PIRIMYS-YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
+N N K +++ + R K N+++KN+D SID++
Sbjct: 89 NINGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEK 148
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + FS FG + SCK+ GQ G GFV +++ A A++++NG ++ K ++V
Sbjct: 149 LKELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVA 208
Query: 204 LRKQERES 211
RK ER +
Sbjct: 209 QRKDERRA 216
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LY+ ++D S++D +L +LF+ G V S ++ R + +G G+V ++ EA
Sbjct: 129 KFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRS-PQGQIVGSGFVALSSKDEAM 187
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA++E+N + KP+ + + R
Sbjct: 188 RAVNEMNGKMVGSKPLYVAVAQR 210
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 174/385 (45%), Positives = 249/385 (64%), Gaps = 22/385 (5%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDLD ++N+ QL +LF G +++VRVCRD+ T+RSLGYGYVN++ A +A++
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + K +R+M+ RDP +R SG GN+F+KNL+K +D+K+LHD F+ FG+ILSCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML----LNDKQVFVGPFLRKQERESTADK 215
D G+SRGYGFV F +E SAK AI K+NG + K ++V F+R+ R + A
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLA-ALV 203
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T ++ ++K F +FG ITS A +D G + F F NF+ DDA ++
Sbjct: 204 ANFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKF--EQSLKETADKFEGLNLYVKN 328
VEA++ D ++ YV +AQ + ER + L+ K+ QSL G NLYV+N
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSL--------GNNLYVRN 313
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
D + L ELF E+G + SC+VM +G SRG GFV+FS A+EA+ AL EMNG+M+
Sbjct: 314 FDPEFTGADLLELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLN 373
Query: 389 SKPLYVALAQRKEERRARLQAQFSQ 413
KPL V +AQR+++R L+ QF Q
Sbjct: 374 GKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
Q + +LYV + D + L +LF + G+V S RV S S G+G+V+++ A EA
Sbjct: 302 HQSLGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESG-ASRGFGFVSFSNADEA 360
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 361 NAALREMNGRMLNGKPLIVNIAQR 384
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 168/292 (57%), Positives = 221/292 (75%), Gaps = 4/292 (1%)
Query: 103 FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD 162
F + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D
Sbjct: 1 FFVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 60
Query: 163 SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNN 220
G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ER E A F N
Sbjct: 61 ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTN 119
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
VY+KN E ++ LK+IF ++G S VM D GKSK FGFV+F+ +DA R+V+ +N
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMN 179
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD + D++L++
Sbjct: 180 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 239
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPL
Sbjct: 240 EFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 154/260 (59%), Gaps = 21/260 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 27 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEK 84
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L + FS +G
Sbjct: 85 MNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFSKYGPA 144
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS +V TD G+S+G+GFV F+ E A+ A+D++NG +N KQV+VG +K ER++
Sbjct: 145 LSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELK 204
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 205 RKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 263
Query: 263 FVNFDDPDDAARSVEALNGK 282
FV F P++A ++V +NG+
Sbjct: 264 FVCFSSPEEATKAVTEMNGR 283
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 131/221 (59%), Gaps = 14/221 (6%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+
Sbjct: 15 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 73
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A R++E +NG +D++ +VG+ + + ER E+ + A +F N+Y+K
Sbjct: 74 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGAR--------AKEF--TNVYIK 123
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
N + + D+KLKE+FS++G S +VM D +G S+G GFV+F E+A +A+ EMNGK +
Sbjct: 124 NFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEM 183
Query: 388 VSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPV 428
K +YV AQ+K ER+ L+ +F QM+ RM Y V
Sbjct: 184 NGKQVYVGRAQKKGERQTELKRKFEQMKQ---DRMTRYQGV 221
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 101/180 (56%), Gaps = 22/180 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L ++F++ G +S+RV D S + S G+G+V++ +
Sbjct: 114 AKEF--TNVYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGK-SKGFGFVSFERHED 170
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A RA+DE+N +NGK + + + + D R G N+++KNLD
Sbjct: 171 AQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGV-NLYVKNLD 229
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
+D++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 230 DGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 288
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 217 RYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 274
Query: 96 RALDELNFTPLNGKPI 111
+A+ E+N + KP+
Sbjct: 275 KAVTEMNGRIVATKPL 290
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 238/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KL+E
Sbjct: 261 GKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSRPPGVPVYIKNLDETIDDEKLRE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+MV SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEEATKAVGEMNGRMVGSKPLHVTLGQ 377
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 161/297 (54%), Gaps = 17/297 (5%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYP 426
T E A KA+ +++GK + K LYV AQ+K ER A L+ +F +++ R P P
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSRPPGVP 303
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/377 (45%), Positives = 251/377 (66%), Gaps = 26/377 (6%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDLD ++N+ QL D+F G +++VRVCRD+ T+RSLGYGYVNY+ + A++A++
Sbjct: 21 ASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASKAME 80
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
ELNF + K IRIM+ RDP +R SG+GNIF+KNL + +D++ L F FG ILSCKV
Sbjct: 81 ELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKKFGEILSCKV 140
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ--------VFVGPFLRKQERES 211
D G+SRGYGFV F ++++AK+AI+K+NG DK+ ++V F+R+ R +
Sbjct: 141 MDDESGKSRGYGFVHFKDDDAAKAAIEKMNG----DKEHADADKAALYVANFIRRNARLA 196
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+K L T +D ++K F +FG ITS A+ +D +G++ F F NF+ DD
Sbjct: 197 -ALVANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNGRA--FAFCNFEKHDD 253
Query: 272 AARSVEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
A +++EA + ++ + ++ YV +AQ + ER + L+ K+ Q + G NLYV
Sbjct: 254 AVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQC------QSLGNNLYV 307
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
+N D ++ L ELF E+G I SC+VM D NGISRG GFV+F A++A+ AL EMNG+M
Sbjct: 308 RNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAALREMNGRM 367
Query: 387 VVSKPLYVALAQRKEER 403
+ KPL V +AQR+++R
Sbjct: 368 LNGKPLVVNIAQRRDQR 384
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 227/310 (73%), Gaps = 9/310 (2%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+FIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F+ +E+A AI+K+
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 189 NGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
NG+LLND++VFVG F ++ERE+ A F NVY+KN E + +LK++F +FG
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S VMRD+ GKS+ FGFV+++ +DA ++V+ +NGK+ K +VG+AQKK ER+ ELK
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKR 179
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
KFEQ +E +++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + +G S+G GF
Sbjct: 180 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 238
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----MRP-PVGPR 421
V F + EEA+KA+TEMNG++V SKPLYVALAQRKEER+A L Q+ Q +R P G
Sbjct: 239 VCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHVAGLRALPAGAI 298
Query: 422 MPMYPPVAPG 431
+ + P A G
Sbjct: 299 LNQFQPAAGG 308
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GY +V++ A +A+++
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 58
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D+ L + FS FG
Sbjct: 59 MNGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKT 118
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV DS G+SRG+GFV ++ E A A+D++NG ++ K +FVG +K ER++
Sbjct: 119 LSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELK 178
Query: 215 K----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+ +R+ N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FG
Sbjct: 179 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 237
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F ++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 238 FVCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHV 287
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 119/210 (56%), Gaps = 25/210 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + V+D L +LF+Q G+ +SV+V RD S+ +S G+G+V+Y +
Sbjct: 88 AKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSRGFGFVSYEKHED 144
Query: 94 ATRALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDK 137
A +A+DE+N ++GK I R + I + N++IKNLD
Sbjct: 145 ANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 204
Query: 138 SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197
+ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 205 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFPSREEATKAVTEMNGRIVGSKP 263
Query: 198 VFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER K N Y+++++
Sbjct: 264 LYVALAQRKEER-----KAHLTNQYMQHVA 288
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 165/208 (79%), Positives = 184/208 (88%), Gaps = 5/208 (2%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
MRD DGKS+CFGFVNF++ DDAA++ EALNGKKFDDKEW+VGKAQKKYERE+ELK +FEQ
Sbjct: 1 MRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 60
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
S+KE ADKF+G NLY+KNLDDSI D+K+KELFS FGTITSCKVMRDPNGISRGSGFVAFS
Sbjct: 61 SMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 120
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP----PVGPRMPMYP 426
T EEAS+AL EMNGKMV SKPLYVALAQRKE+RRARLQAQFSQMRP P RMPMYP
Sbjct: 121 TPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGRMPMYP 180
Query: 427 PVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
P PGLGQQ+FYGQGPP I+PPQ + +
Sbjct: 181 PTGPGLGQQIFYGQGPPAIMPPQPGFGY 208
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 94/161 (58%), Gaps = 12/161 (7%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE----------- 210
D G+SR +GFV F+N + A A + LNG +DK+ FVG +K ERE
Sbjct: 3 DGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSM 62
Query: 211 -STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
ADK + N+Y+KNL ++ ++ +K++F FG ITS VMRD +G S+ GFV F P
Sbjct: 63 KEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTP 122
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
++A+R++ +NGK K YV AQ+K +R L+ +F Q
Sbjct: 123 EEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQ 163
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD SI ++ + + FS FG I SCKV D G SRG GFV F E A A+ ++
Sbjct: 73 NLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEM 132
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
NG ++ K ++V RK++R +
Sbjct: 133 NGKMVASKPLYVALAQRKEDRRA 155
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A +F +LY+ +LD S+ D ++ +LF+ G + S +V RD S G G+V ++ E
Sbjct: 66 ADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRD-PNGISRGSGFVAFSTPEE 124
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A+RAL E+N + KP+ + + R
Sbjct: 125 ASRALLEMNGKMVASKPLYVALAQR 149
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/361 (49%), Positives = 238/361 (65%), Gaps = 5/361 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LKK+F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K VG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEASKA+ EMNG++V SK L+V L Q +
Sbjct: 321 EFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379
Query: 401 E 401
Sbjct: 380 H 380
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 160/297 (53%), Gaps = 17/297 (5%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D I D+KLK+LFSE+G S KV+RD G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYP 426
T E A KA+ E++GK + K L V AQ+K ER A L+ +F +++ R P P
Sbjct: 247 ETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVP 303
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 154/280 (55%), Gaps = 26/280 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD S+++ L+ LF+ G ++S +V C D ++ GY YV++++ A RA+
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIW 163
Query: 100 ELNFTPLNGKPIRI----MYSYRDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+N LN + + + R +R ++ N+F+KN ID++ L FS +G
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYG 223
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----------P 202
S KV D+ G+S+G+GFV+++ E+A+ A+ +L+G ++ K + VG
Sbjct: 224 PTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAE 283
Query: 203 FLRKQERESTADKTRFNNV--YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
R+ ER DKTR V Y+KNL ET ++ LK+ F FG I+ VM + G+ K
Sbjct: 284 LRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEV-GQGKG 342
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKKY 298
FG V F ++A+++V +NG+ K +V G+A+ ++
Sbjct: 343 FGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQARHRW 382
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/401 (43%), Positives = 252/401 (62%), Gaps = 19/401 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD V + L +LF G +++VRVCRD+ T+RSLGYGYVN+N+ A +A++
Sbjct: 30 SLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAMEA 89
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + K +RIM+ RDPT+R SG GNIF+KNL +D++ L F FG+ILSCKV
Sbjct: 90 LNFKRVGDKCMRIMWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFGDILSCKVM 149
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ-----VFVGPFLRKQERESTADK 215
D G+SRGYGFV F N+ +AK AI+ +NG + + ++V F+R+ R +T
Sbjct: 150 EDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRNARLATL-V 208
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+K + T ++ ++K F +FG ITS+A +D +G + F F NF+ +DA ++
Sbjct: 209 ANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKA 266
Query: 276 VEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
+EA + + D ++ YV +AQ + ER + L+ K+ Q + G NLYV+N D
Sbjct: 267 IEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC------QTLGNNLYVRNFD 320
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+++ L ELF E+G I SC+VM D NG SRG GFV+F A++A+ AL EMNG+M+ K
Sbjct: 321 PEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGK 380
Query: 391 PLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPG 431
PL V +AQR+++R L+ QF Q + RM P V+ G
Sbjct: 381 PLIVNIAQRRDQRFMMLRLQFQQRLQAMMRRMHSMPFVSHG 421
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 153/304 (50%), Gaps = 30/304 (9%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEE 179
T + ++++ +LD + L + F FG IL+ +V D + Q S GYG+V F++ +
Sbjct: 22 TTKALQVASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHD 81
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
SA A++ LN + DK + + Q+R+ T + N++VKNL +L IF
Sbjct: 82 SAAKAMEALNFKRVGDKCMRI----MWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIF 137
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-FDDKE----WYVGKA 294
+FG I S VM D +GKS+ +GFV+F + + A ++E +NG+K D+E YV
Sbjct: 138 KKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANF 197
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
++ R L F N+Y+K + ++ + +++ FS+FG ITS
Sbjct: 198 IRRNARLATLVANF-------------TNVYIKQVLPTVDKEVIEKFFSKFGGITSSATC 244
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKP---LYVALAQRKEERRARLQA 409
+D NG R F F E+A KA+ + + V V P LYV AQ + ER L+
Sbjct: 245 KDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQ 302
Query: 410 QFSQ 413
++ Q
Sbjct: 303 KYMQ 306
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 96/185 (51%), Gaps = 18/185 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + +V+ + F++ G + S C+D + R + + N+ +A +A++
Sbjct: 212 TNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNGR---VFAFCNFEKHEDAVKAIE 268
Query: 100 ELNFTPLNG--KPIRIMY-------SYRDPTIR------KSGAGNIFIKNLDKSIDNKAL 144
+ ++G P +Y S R +R ++ N++++N D + L
Sbjct: 269 ASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENL 328
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
H+ F +G I SC+V TD+ G SRG+GFV F+N + A +A+ ++NG +LN K + V
Sbjct: 329 HELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQ 388
Query: 205 RKQER 209
R+ +R
Sbjct: 389 RRDQR 393
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + +LYV + D + L++LF + G + S RV D + S G+G+V++ A +A
Sbjct: 308 QTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTD-ANGNSRGFGFVSFENADQAN 366
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 367 AALREMNGRMLNGKPLIVNIAQR 389
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 244/364 (67%), Gaps = 5/364 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ +LYVGDLD V + LY F G + R+CRD TR LGYGYVN+ +A A
Sbjct: 1 LKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWA 60
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ +NF +NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSC
Sbjct: 61 LNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 120
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TAD 214
KV D G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D
Sbjct: 121 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 179
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
+ F NV+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A +
Sbjct: 180 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 239
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V L+GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+
Sbjct: 240 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 299
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+KLKE FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V
Sbjct: 300 DEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 358
Query: 395 ALAQ 398
L Q
Sbjct: 359 TLGQ 362
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 154/278 (55%), Gaps = 17/278 (6%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKL 188
+++ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 189 NGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 65 NFDLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 119
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 120 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR-- 176
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV
Sbjct: 177 -------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 229
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
+ T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 230 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 267
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/366 (48%), Positives = 249/366 (68%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ + SLYVGDL V + L+ FN +G V+S+R+CRDL +RRSLGY YVN+ +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+ALD +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG IL
Sbjct: 66 KALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIL 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
S KV +D G SRGYGFV + ++ +A AI+++NG LL D VFV F +++RE+ +
Sbjct: 126 SSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRS 184
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+ F NVY+KNL + ++ LK IF ++G S VM+D +GKSK FGFV+F + + A
Sbjct: 185 KTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAAR 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+VE +NG+ + + +VG+AQKK ER+ ELK KFEQ KE + LY+KNLD++I
Sbjct: 245 NAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYIKNLDETI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+ L+ FS FG+I KVM++ G S+G G + F + E A+KA+ EMNG+++ SK L
Sbjct: 305 DDETLRREFSSFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKALN 363
Query: 394 VALAQR 399
+AL Q+
Sbjct: 364 IALGQK 369
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 166/292 (56%), Gaps = 16/292 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
A ++++ +L + + L F+T G +LS ++ D + + S GY +V F + A+ A+
Sbjct: 9 AASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKAL 68
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D +N L+ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 69 DTMNFDLIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKI 124
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S+ VM D +G S+ +GFV++ D A R++E +NGK D +V + + + +RE EL+
Sbjct: 125 LSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELR 183
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
K E N+Y+KNL D++ D+ LK +FS++G S KVM+D NG S+G G
Sbjct: 184 SKTS----------EFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFG 233
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
FV+F E A A+ EMNG+ + + ++V AQ+K ER+A L+ +F QM+
Sbjct: 234 FVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKE 285
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 180/358 (50%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV +D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 HG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD+SISD+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESISDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GHGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 173/366 (47%), Positives = 247/366 (67%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ + SLYVGDL V + L+ FN +G V+S+R+CRDL + RSLGYGYVN+ +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+AL+ +NF + GK IR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG I+
Sbjct: 66 KALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIM 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S KV TD G S+GYGFV + ++ +A AI+++NG LL D +FV F +++RE+ +
Sbjct: 126 SSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELRE 184
Query: 216 --TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN + ++ L+ +F ++G S VM+DA GKSK FGFV+FD A
Sbjct: 185 KPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAK 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+VE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + LY+KNLDD+I
Sbjct: 245 NAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+ L++ FS FG+I KVM++ G S+G G + F + E A+KA+ EMNG+++ SKPL
Sbjct: 305 DDETLRKEFSVFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 394 VALAQR 399
+AL Q+
Sbjct: 364 IALGQK 369
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 162/292 (55%), Gaps = 16/292 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
A ++++ +L + + L F+T G +LS ++ D + S GYG+V F A+ A+
Sbjct: 9 AASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKAL 68
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ +N L+ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 69 ETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKI 124
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S+ VM D +G SK +GFV++ D A R++E +NGK D +V + + + +RE EL+
Sbjct: 125 MSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
K E N+Y+KN D + D+ L+ +FS++G S KVM+D +G S+ G
Sbjct: 184 EK----------PAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFG 233
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
FV+F + + A A+ +MNG+ + + ++V AQ+K ER+A L+ F QM+
Sbjct: 234 FVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKE 285
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 26/205 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
S K R ++YV +L E TED L + F G + S + RD +S +G+VNF
Sbjct: 2 SVETKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQV 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK---FEQSLKETADKFEGL-NLY 325
DA +++E +N FD +KGK S ++ + G+ N++
Sbjct: 62 GDAQKALETMN---FD-----------------LIKGKSIRLMWSQRDACLRKSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G GFV + A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQAQ 410
++ L+VA + +++R A L+ +
Sbjct: 161 LLRDSTLFVARFKSRKDREAELREK 185
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 167/307 (54%), Positives = 231/307 (75%), Gaps = 5/307 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP+ R+SG GNIFIKNL +IDNKALHDTFS FG ILSCKVATD +GQS+ +GFV
Sbjct: 1 MWSQRDPSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTT 231
++ E+A++AI+ +NGMLLND++V+VG + K++RES + K + N+YVKN+ +
Sbjct: 61 HYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFS 120
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+++ +K+F FG ITS + +D DGKSK FGFVN++ + A ++VE LN K+ + ++ YV
Sbjct: 121 DEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYV 180
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G+AQKK ER ELK ++E + E K++G+NL+VKNLDDSI +KL+E F FG+ITS
Sbjct: 181 GRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSA 240
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
KVM D G S+G GFV FS+ EEA+KA+TEMN +M++ KPLYVALAQRK+ RR++L+ Q
Sbjct: 241 KVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQI 300
Query: 412 ---SQMR 415
+QMR
Sbjct: 301 QARNQMR 307
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 159/290 (54%), Gaps = 19/290 (6%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
+R+ ++++ +L ++++ L+D F+ G+++S +V D +S +G+V+Y A
Sbjct: 9 SRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-DMGQSKCFGFVHYETAEA 67
Query: 94 ATRALDELNFTPLNGKPIRI--MYSYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDT 147
A A++ +N LN + + + S +D + K+ NI++KN+D ++
Sbjct: 68 AEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFSDEEFEKL 127
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
F FG I S + D G+S+G+GFV ++ ESA A+++LN +N ++++VG +K+
Sbjct: 128 FVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKR 187
Query: 208 ER--------ESTA----DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
ER EST K + N++VKNL ++ + L++ F FG ITS VM D
Sbjct: 188 ERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEA 247
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
GKSK FGFV F P++A +++ +N + K YV AQ+K R +L+
Sbjct: 248 GKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLE 297
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++DL +D + LF G + S+ + +D + S G+G+VNY A +A++
Sbjct: 108 TNIYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGK-SKGFGFVNYETHESAVKAVE 166
Query: 100 ELNFTPLNGKPIRI----------------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN +NG+ I + S R + K N+F+KNLD SID++
Sbjct: 167 ELNDKEINGQKIYVGRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEK 226
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F FG+I S KV D G+S+G+GFV F + E A AI ++N ++ K ++V
Sbjct: 227 LEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALA 286
Query: 204 LRKQERESTADK 215
RK R S ++
Sbjct: 287 QRKDVRRSQLEQ 298
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 179/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ E ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ + I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK V K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/366 (46%), Positives = 250/366 (68%), Gaps = 4/366 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ + SLYVGDL V + L+ F+ +G V+S+R+CRDL ++RSLGY YVN+ ++A
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+AL +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG I+
Sbjct: 66 KALVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIM 125
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-D 214
S KV TD G S+GYGFV + + +A AI+++NG LL + +FV F +++RE+ D
Sbjct: 126 SSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRD 184
Query: 215 K-TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
K T F NVY+KN + ++ L+++F ++G S VM+DA GKSK FGFV+FD + A
Sbjct: 185 KPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAK 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+VE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + LY+KNLDD+I
Sbjct: 245 NAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTI 304
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+ L++ FS FG+I KVM++ G S+G G + F + E A+KA+ EMNG+++ SKPL
Sbjct: 305 DDETLRKEFSVFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 394 VALAQR 399
+AL Q+
Sbjct: 364 IALGQK 369
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 163/292 (55%), Gaps = 16/292 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
A ++++ +L + + L FST G +LS ++ D + Q S GY +V F A+ A+
Sbjct: 9 AASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKAL 68
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I
Sbjct: 69 VTMNFDVIKGKSIR----LMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTI 124
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S+ VM D +G SK +GFV++ D A R++E +NGK + +V + + + +RE EL+
Sbjct: 125 MSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELR 183
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
K E N+Y+KN D + D+KL+E+FS++G S KVM+D G S+G G
Sbjct: 184 DK----------PTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFG 233
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
FV+F + E A A+ +MNG+ + + ++V AQ+K ER+A L+ F QM+
Sbjct: 234 FVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKE 285
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/358 (50%), Positives = 238/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+ L FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNL + ++ LK++F E+G I S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD+SI D+KLKE
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SK L+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTLGQ 377
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 155/276 (56%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKNL D ++D+KLKELFSE+G I S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ E++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLA 282
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 173/361 (47%), Positives = 237/361 (65%), Gaps = 5/361 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDK+IDN+AL FS FGNILSCKV D
Sbjct: 81 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDD 140
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T ++ F N
Sbjct: 141 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTN 199
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ L K+F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 200 VFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 259
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K VG+AQKK ER EL+ +FE+ + ++ G+ +Y+KNLD++I+D+KLKE
Sbjct: 260 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKE 319
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA KA+ EMNG+++ SK L+V L Q +
Sbjct: 320 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQAR 378
Query: 401 E 401
Sbjct: 379 H 379
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 156/286 (54%), Gaps = 17/286 (5%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL +T L +F FG I S
Sbjct: 81 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCK 135
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 136 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 190
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T ++ N++VKN D I D+KL +LFSE+G S KV+RD G S+G GFV +
Sbjct: 191 -----TRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRY 245
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
T E A KA+ E++GK + K L V AQ+K ER A L+ +F +++
Sbjct: 246 ETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLK 291
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 156/281 (55%), Gaps = 28/281 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD ++++ L+ LF+ G ++S +V C D ++ GY YV++++ A RA+
Sbjct: 106 NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIW 162
Query: 100 ELNFTPLNGKPIRIMYSYRDP--------TIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+N LN + + + ++ P T ++ N+F+KN ID++ L+ FS +
Sbjct: 163 HMNGVRLNNRQVYVG-RFKFPEERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEY 221
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG---------- 201
G S KV D+ G+S+G+GFV+++ E+A+ A+ +L+G ++ K + VG
Sbjct: 222 GPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLA 281
Query: 202 PFLRKQERESTADKTRFNNV--YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
R+ ER +K R + V Y+KNL ET ++ LK+ F FG I+ VM + G+ K
Sbjct: 282 ELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGK 340
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKKY 298
FG V F ++A ++V+ +NG+ K +V G+A+ ++
Sbjct: 341 GFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQARHRW 381
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEASKA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 248/378 (65%), Gaps = 18/378 (4%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+Q SLYVGDLD ++++ QL ++F G +++VRVCRD+ T+RSLGYGYVNY+ A+ A
Sbjct: 16 KQLQVASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSA 75
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
T+A++E+NF + K IRIM+ RDP +R SG GN+F+KNL +D++ L F FG I
Sbjct: 76 TKAMEEMNFKRVGEKCIRIMWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEI 135
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM--LLNDKQ--VFVGPFLRKQERE 210
LSCKV D G SRGYGFV F ++ +AKSAI+ +NG+ ++K+ ++V F+R+ R
Sbjct: 136 LSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRNARL 195
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
+ A F NVY+K + T + ++K F +FG ITS A+ +D +G++ F F NF+ D
Sbjct: 196 A-ALVANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNGRA--FAFCNFEKHD 252
Query: 271 DAARSVEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
DA +++E + + + ++ YV +AQ + ER + L+ K+ Q + G NLY
Sbjct: 253 DAVKAIEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQC------QSLGNNLY 306
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
V+N D ++ L ELF E+G I SC+VM D NG+SRG GFV+F A++A+ AL EM+G+
Sbjct: 307 VRNFDPEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMSGR 366
Query: 386 MVVSKPLYVALAQRKEER 403
M+ KPL V +AQR+++R
Sbjct: 367 MLNGKPLVVNIAQRRDQR 384
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 173/405 (42%), Positives = 249/405 (61%), Gaps = 27/405 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD V + L +LF G +++VRVCRD+ T+RSLGYGY+N+N A +A++
Sbjct: 23 SLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAMEA 82
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + K +RIM+ RDP +R SG GN+F+KNL +D++ L F FG+ILSCKV
Sbjct: 83 LNFKRVGDKCMRIMWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFGDILSCKVM 142
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ---------VFVGPFLRKQERES 211
D G+SRGYGFV F N+ +AK AI+ +NG DK ++V F+R+ R +
Sbjct: 143 EDEEGKSRGYGFVHFKNDNAAKEAIENMNG----DKDHADEEKKMGLYVANFIRRNARLA 198
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
T F NVY+K + T ++ ++K F FG ITS+A +D +G + F F NF+ +D
Sbjct: 199 TL-VANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG--RVFAFCNFEKHED 255
Query: 272 AARSVEALNGKKFD-----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
A +++EA + + D ++ YV +AQ + ER + L+ K+ Q + G NLYV
Sbjct: 256 AVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC------QTLGNNLYV 309
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
+N D +++ L ELF E+G I SC+VM D NG SRG GFV+F A++A+ AL EMNG+M
Sbjct: 310 RNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNGRM 369
Query: 387 VVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPG 431
+ KPL V +AQR+++R L+ QF Q + RM P V+ G
Sbjct: 370 LNGKPLIVNIAQRRDQRFMMLRLQFQQRLQAMMRRMHSMPFVSHG 414
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 150/304 (49%), Gaps = 30/304 (9%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEE 179
T + ++++ +LD + L + F FG IL+ +V D + Q S GYG++ F+N +
Sbjct: 15 TTKALQVASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHD 74
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
SA A++ LN + DK + + Q+R+ + NV+VKNL +L IF
Sbjct: 75 SAAKAMEALNFKRVGDKCMRI----MWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIF 130
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG-KKFDDKE----WYVGKA 294
+FG I S VM D +GKS+ +GFV+F + + A ++E +NG K D+E YV
Sbjct: 131 KKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDKDHADEEKKMGLYVANF 190
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
++ R L F N+Y+K + ++ + +++ FS FG ITS
Sbjct: 191 IRRNARLATLVANFT-------------NVYIKQVLPTVDKEVIEKFFSRFGGITSSATC 237
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKP---LYVALAQRKEERRARLQA 409
+D NG R F F E+A KA+ + + V V P LYV AQ + ER L+
Sbjct: 238 KDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQ 295
Query: 410 QFSQ 413
++ Q
Sbjct: 296 KYMQ 299
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + +V+ + F++ G + S C+D + R + + N+ +A +A++
Sbjct: 205 TNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNGR---VFAFCNFEKHEDAVKAIE 261
Query: 100 ELNFTPLNG--KPIRIMY-------SYRDPTIR------KSGAGNIFIKNLDKSIDNKAL 144
+ ++G P +Y S R +R ++ N++++N D + L
Sbjct: 262 ASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENL 321
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
H+ F +G I SC+V TD+ G SRG+GFV F N + A +A+ ++NG +LN K + V
Sbjct: 322 HELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNGRMLNGKPLIVNIAQ 381
Query: 205 RKQER 209
R+ +R
Sbjct: 382 RRDQR 386
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + +LYV + D + L++LF + G + S RV D + S G+G+V++ A +A
Sbjct: 301 QTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTD-ANGNSRGFGFVSFGNADQAN 359
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
AL E+N LNGKP+ + + R
Sbjct: 360 AALREMNGRMLNGKPLIVNIAQR 382
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 159/277 (57%), Positives = 210/277 (75%), Gaps = 4/277 (1%)
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
IDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++V
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 199 FVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
FVG F ++ERE+ A F NVY+KN E ++ LK++FG+FG S VM D G
Sbjct: 60 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 119
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
KSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++
Sbjct: 120 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 179
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
+++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+
Sbjct: 180 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 238
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 239 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 275
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 160/280 (57%), Gaps = 21/280 (7%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
+++ LYD F+ G ++S +V D + S GYG+V++ A RA++++N LN +
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 58
Query: 111 IRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL 164
+ + + R + GA N++IKN + +D++ L + F FG LS KV TD
Sbjct: 59 VFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES 118
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK--------- 215
G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++ +
Sbjct: 119 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 178
Query: 216 -TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FGFV F P++A
Sbjct: 179 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEA 237
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 238 TKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 277
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 78 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 134
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 135 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 193
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 194 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 252
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 253 PLYVALAQRKEERQA-----HLTNQYMQRMA 278
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 174/394 (44%), Positives = 251/394 (63%), Gaps = 5/394 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L F+ V+SV +CR+ T +SL Y Y+N+++ A+ A+
Sbjct: 22 SLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMAR 81
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRK-SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN T L GK +RIM+S RD + R+ +G GN+++KNLD SI + L F+ FG ILSCKV
Sbjct: 82 LNHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKV 141
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
++ GQS+G+GFVQF+ E+SA +A L+G +++ K++FV F+ K ER + A F
Sbjct: 142 VEEN-GQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNERVAMAGNKGFT 200
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL E TED L ++F ++G ++S VMRD G+S+ FGFVNF P++A ++V++L
Sbjct: 201 NVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSL 260
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
+G++ K +VGKA K+ ER LK K+ + ++ NLYVKNL +S++D L+
Sbjct: 261 HGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSN-MRWSNLYVKNLSESMNDTTLR 319
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E+F +G I S KVMR NG S+G GFV FS EE+ +A +NG V K L V +A+R
Sbjct: 320 EIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAER 379
Query: 400 KEERRARLQAQFSQMRPPVGPRMPMYP-PVAPGL 432
KE+R RLQ Q+ +P + P+ P P P L
Sbjct: 380 KEDRLKRLQ-QYFHAQPRHYTQAPLVPSPAQPVL 412
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 21/202 (10%)
Query: 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVN 265
Q E+ + F ++YV +LS TE DL F + S + R++ GKS C+ ++N
Sbjct: 9 QALENHQHSSMFASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYIN 68
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQK--KYEREMELKGKFEQSLKETADKFEGLN 323
FD P A+ ++ LN K + +Q+ Y R N
Sbjct: 69 FDSPFSASNAMARLNHTDLKGKAMRIMWSQRDLSYRRRTGFG-----------------N 111
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
LYVKNLD SI+ L+ +F+ FG I SCKV+ + NG S+G GFV F T + A A + ++
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVVEE-NGQSKGFGFVQFETEQSAVTARSALH 170
Query: 384 GKMVVSKPLYVALAQRKEERRA 405
G MV K L+VA K ER A
Sbjct: 171 GSMVDGKKLFVAKFINKNERVA 192
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +L ++ + L+ LF+Q G V SV V RD RS G+G+VN+ A +A+D
Sbjct: 200 TNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCHPENAKKAVD 258
Query: 100 ELNF------TPLNGKPIR-------IMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKAL 144
L+ T GK ++ + + YRD I KS N+++KNL +S+++ L
Sbjct: 259 SLHGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTL 318
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ F +G I+S KV G+S+G+GFV F N E +K A LNG ++ K + V
Sbjct: 319 REIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAE 378
Query: 205 RKQER 209
RK++R
Sbjct: 379 RKEDR 383
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/361 (48%), Positives = 234/361 (64%), Gaps = 5/361 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDL V + LY F G + R+CRD T LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIK+LDKSIDN+ L FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNL + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A +SV L+
Sbjct: 201 VFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G V FS+ EEA+KA+ EMNG ++ SKPL V L Q +
Sbjct: 321 EFSSFGSISRAKVMME-MGQGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQAR 379
Query: 401 E 401
Sbjct: 380 H 380
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 161/297 (54%), Gaps = 17/297 (5%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +L + L+ F G + ++ D + S GYG+V F A+ A++ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++K+L ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKNL D++ D+KLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYP 426
T E A K++ +++GK + K LYV AQ+K ER A L+ +F +++ R P P
Sbjct: 247 ETHEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVP 303
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 238/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+++ SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 377
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 153/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FSE+G+ S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMLEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/311 (53%), Positives = 221/311 (71%), Gaps = 7/311 (2%)
Query: 45 GDLDLSVNDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
GDLD SV + LY F++ + SV+VC D +T SLGYGYVN+N + +A A++ LN+
Sbjct: 18 GDLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNY 77
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSCKVA D+
Sbjct: 78 CKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA 137
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR-FNNVY 222
G S+GYGFVQF ++ S +A + NG L+ ++ + V PF+ + + DK+R F NVY
Sbjct: 138 SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ----WDKSRVFTNVY 193
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
VKNL ET T+ DLK++FGEFG ITS VM+D +GKS+ FGFVNF+ + A ++E +NG
Sbjct: 194 VKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGV 253
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISDDKLKEL 341
D+KE +VG+AQ+K R +LK KFE + + +G+NLYVKNLDDS+ + KL+EL
Sbjct: 254 VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEEL 313
Query: 342 FSEFGTITSCK 352
FSEFGTITSCK
Sbjct: 314 FSEFGTITSCK 324
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 145/280 (51%), Gaps = 21/280 (7%)
Query: 134 NLDKSIDNKALHDTFSTFGN-ILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGM 191
+LD S++ L+ FS F + I S KV D + G S GYG+V F++ AK+A++ LN
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 192 LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
L K + + ER+ + + NV+VKNL E+ L +F FG + S V
Sbjct: 79 KLKGKPMRI----MFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVA 134
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
RDA G SK +GFV F + NG ++ +V + G++++S
Sbjct: 135 RDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSR--------GQWDKS 186
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
T N+YVKNL ++ +D LK LF EFG ITS VM+D G SR GFV F
Sbjct: 187 RVFT-------NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEK 239
Query: 372 AEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
AE A A+ +MNG +V K L+V AQRK R L+A+F
Sbjct: 240 AEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKF 279
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 19/224 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 103 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTACNF 161
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R + N+++KNL ++ + L F FG I S V
Sbjct: 162 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 221
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRF 218
D G+SR +GFV F+ E+A +AI+K+NG+++++K++ VG RK R T D K +F
Sbjct: 222 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR--TEDLKAKF 279
Query: 219 N--------------NVYVKNLSETTTEDDLKKIFGEFGIITST 248
N+YVKNL ++ L+++F EFG ITS
Sbjct: 280 ELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 323
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 18/143 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D+ L LF + G++ S V +D +S +G+VN+ A A A
Sbjct: 188 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTA 246
Query: 98 LDELNFTPLNGKPIRIMYSYR--------------DPTIR--KSGAG-NIFIKNLDKSID 140
++++N ++ K + + + R + IR K+ G N+++KNLD S+D
Sbjct: 247 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 306
Query: 141 NKALHDTFSTFGNILSCKVATDS 163
N L + FS FG I SCK A +S
Sbjct: 307 NTKLEELFSEFGTITSCKYACNS 329
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 239/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKELFSE+G S KV+RD G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLA 282
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/360 (49%), Positives = 238/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD T LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
LNGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNL + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+ V SKPL+V L Q +
Sbjct: 321 EFSPFGSISRAKVMMEV-GQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LLN K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLLNGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKNL D + D+KLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLA 282
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 177/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 231/356 (64%), Gaps = 6/356 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDLD V ++ L F +G + S+R+CR T +SL Y YVN + +A+RAL
Sbjct: 18 SLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGL 77
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN T L GKP+RIM+ RDP RK+G N+F+KNLD SI + L FS +G ILSCKVA
Sbjct: 78 LNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVA 137
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
++ G+S+G+GFVQF++++SA A L+ +L K++ V F++K ER + A F N
Sbjct: 138 GEN-GRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFTN 196
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YVKNL ET TED LK +F G ++S A+M D +GKSK FGFVNF PDDA ++V+ +N
Sbjct: 197 LYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMN 256
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G K +VGKAQ+K ER M LK +++ + +K NLYVKNL+ I D KLKE
Sbjct: 257 GSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKE 316
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+FS +G I S KV+ +G S+ GFV F++ EEA+KAL +NG PL+ ++
Sbjct: 317 VFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNG-----HPLFFSV 367
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 146/265 (55%), Gaps = 20/265 (7%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+ +L+V +LD S++ S L +F++ G ++S +V + RS G+G+V + +
Sbjct: 99 ARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVAGE--NGRSKGFGFVQFESQDS 156
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTF 148
A A L+ T L GK + + + T R + A N+++KNLD++I L D F
Sbjct: 157 ALVAQTALHDTMLGGKKLHVC-KFVKKTERTAAAPCEVFTNLYVKNLDETITEDGLKDMF 215
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S G++ S + D G+S+ +GFV F + + AK A+D +NG ++ K +FVG RK E
Sbjct: 216 SVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSE 275
Query: 209 R------------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
R + +K R +N+YVKNL+ + LK++F +G I S V+ DG
Sbjct: 276 RTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDG 335
Query: 257 KSKCFGFVNFDDPDDAARSVEALNG 281
SK FGFV F P++A +++ ALNG
Sbjct: 336 TSKQFGFVCFASPEEANKALVALNG 360
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 150/289 (51%), Gaps = 18/289 (6%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAID 186
++++ +LD + L F G I S ++ L G+S Y +V + A A+
Sbjct: 17 ASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALG 76
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN L K + + +R+ A KT F N++VKNL + + L+ IF ++G I
Sbjct: 77 LLNHTNLKGKPMRI----MWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTIL 132
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V + +G+SK FGFV F+ D A + AL+ K+ +V K KK ER
Sbjct: 133 SCKVAGE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTER------ 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ + F NLYVKNLD++I++D LK++FS G ++S +M D G S+ GF
Sbjct: 186 ----TAAAPCEVFT--NLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGF 239
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
V F + ++A KA+ MNG ++ SK L+V AQRK ER L+ ++ +
Sbjct: 240 VNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLH 288
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 175/396 (44%), Positives = 249/396 (62%), Gaps = 7/396 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V + L D F+ VVSV +CR+ T +S+ Y Y+N+++ A+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRK---SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LN + L GK +RIM+S RD R+ +G N+++KNLD SI + L F FG+ILSC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV ++ GQS+G+GFVQFD E+SA SA L+G ++ K++FV F+ K ER + A
Sbjct: 142 KVVEEN-GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD 200
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
NVYVKNL ET T+D L +F ++G ++S VMRD G+S+ FGFVNF +P++A +++E
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+L G + K+ +VGKA KK ER LK KF + + NLYVKNL +S+++ +
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPN-MRWSNLYVKNLSESMNETR 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+E+F +G I S KVM NG S+G GFV FS EE+ +A +NG +V KP+ V +A
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 398 QRKEERRARLQAQFSQMRPPVGPRMPMYP-PVAPGL 432
+RKE+R RLQ Q+ Q +P + P P P P L
Sbjct: 380 ERKEDRIKRLQ-QYFQAQPRQYTQAPSAPSPAQPVL 414
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 15/191 (7%)
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAAR 274
+RF ++YV +LS TE DL F + S + R++ GKS C+ ++NFD P A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++ LN K + +Q+ + F NLYVKNLD SI+
Sbjct: 78 AMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFA-------------NLYVKNLDSSIT 124
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
L+ +F FG+I SCKV+ + NG S+G GFV F T + A A + ++G MV K L+V
Sbjct: 125 SSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 395 ALAQRKEERRA 405
A K+ER A
Sbjct: 184 AKFINKDERAA 194
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 22/189 (11%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
ST++YV +L +V D L+ LF+Q G V SV V RD RS G+G+VN+ A +A+
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Query: 99 DELNFTPLNGKPIRIMYSYR------------------DPTIRKSGAGNIFIKNLDKSID 140
+ L L K + + + + P +R S N+++KNL +S++
Sbjct: 260 ESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWS---NLYVKNLSESMN 316
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
L + F +G I+S KV G+S+G+GFV F N E +K A LNG L++ K + V
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Query: 201 GPFLRKQER 209
RK++R
Sbjct: 377 RVAERKEDR 385
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 237/358 (66%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD T LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN++L FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T DK F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKNL + ++ LK +F E+G S ++RDA GKSK FGFV ++ D A ++V L+
Sbjct: 201 VFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I ++KLKE
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G + FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSAFGSISRAKVMMEV-GQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQ 377
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T DK N++VKNL D + D+KLK LFSE+G S K++RD +G S+G GFV +
Sbjct: 192 -----TRDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T + A KA+ +++GK V K LYV AQ+K ER A
Sbjct: 247 ETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/291 (53%), Positives = 207/291 (71%), Gaps = 5/291 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+++SLYVGDL V+DS L F+++G V+S RVCRDL+TR+SLGYGYVN+ A +
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQ 69
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LN+ PL G+PIRIM+S RDP++RKSG GNIFIKNLDKSI+ K L+DTFS FG ILS
Sbjct: 70 ALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK+ D GQS+GYGFV F+ EE A+ AI+K+N M++ D+ V+VG F+ K ER+S A K
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKV 189
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+FNN+YVKN T + LK++F EFG I S VM+D +GKSK FGFV + DPD A +V
Sbjct: 190 KFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAV 249
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
++GK+ + + Y +AQ+K ER+ ELK K E+ E + LYV+
Sbjct: 250 RTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSR-----LYVQ 295
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 161/295 (54%), Gaps = 17/295 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + + AL FS G +LS +V D + QS GYG+V F++ + A+ A++
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN L + + + +R+ + K+ N+++KNL ++ + +L F FG I S
Sbjct: 74 LNYEPLMGRPIRI----MWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
++ D +G+SK +GFV+F+ + A R++E +N D+ YVGK K ER
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER------- 182
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
K A K + NLYVKN ++KLKE+FSEFG I S VM+D G S+G GFV
Sbjct: 183 -----KSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFV 237
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRM 422
+ + A A+ M+GK + + LY A AQRKEER+ L+ + + R R+
Sbjct: 238 CYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSRL 292
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/360 (49%), Positives = 238/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T DK F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + +D LK++F E+G S V+RD+ GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G + FS+ EEA+KA+ EMNG++V SKPL V L Q +
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQAR 379
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T DK N++VKN D + DDKLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 178/362 (49%), Positives = 239/362 (66%), Gaps = 9/362 (2%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + +D LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + + +G GF V FS+ EEA+KA+ EMNG++V SKPL V L Q
Sbjct: 321 EFSSFGSISRAKVMVE---VEQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Query: 399 RK 400
+
Sbjct: 378 AR 379
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + DDKLKELFSE+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 176/360 (48%), Positives = 237/360 (65%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF +G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ E+A+KA+ EMNG+ V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FS +G S KV+RD +G S+G GFV +
Sbjct: 192 -----TKDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 176/360 (48%), Positives = 236/360 (65%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDK IDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF +G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+ V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL + L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FS +G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 176/360 (48%), Positives = 236/360 (65%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDK IDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN + ++ LK+IF +G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+ V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL + L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLKE+FS +G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/360 (48%), Positives = 236/360 (65%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN ++ LK+IF +G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK + K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ E+A+KA+ EMNG+ V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN + + D+KLKE+FS +G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 233/346 (67%), Gaps = 5/346 (1%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF +NGKP R+M+
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMW 61
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D G S+GY +V F
Sbjct: 62 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHF 120
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNNVYVKNLSETTTE 232
D+ +A AI +NG+ LN++QV+VG F +ER + T D+ F NV+VKN+ + +
Sbjct: 121 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDD 180
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
+ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+GK D K YVG
Sbjct: 181 EKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 240
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE FS FG+I+ K
Sbjct: 241 RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAK 300
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
VM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 301 VMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 345
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 147/264 (55%), Gaps = 17/264 (6%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L+ F G + ++ D + +S GYG+V F A+ A++ +N L+N K P
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGK-----P 56
Query: 203 F-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
F L + + K+ N+++KNL ++ L +F FG I S V+ D +G SK +
Sbjct: 57 FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGY 115
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
+V+FD A R++ +NG + ++++ YVG+ + ER E++ T D+
Sbjct: 116 AYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATF 166
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV + T E A KA+ +
Sbjct: 167 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 226
Query: 382 MNGKMVVSKPLYVALAQRKEERRA 405
++GK + K LYV AQ+K ER A
Sbjct: 227 LHGKSIDGKVLYVGRAQKKIERLA 250
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 156/280 (55%), Gaps = 28/280 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD S+++ L+ LF+ G ++S + VC D ++ GY YV++++ A RA+
Sbjct: 75 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIW 131
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIR--------KSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+N LN + + + ++ P R ++ N+F+KN+ ID++ L + F +
Sbjct: 132 HMNGVRLNNRQVYVG-RFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY 190
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-- 209
G S KV D+ G+S+G+GFV+++ E+A+ A+ L+G ++ K ++VG +K ER
Sbjct: 191 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 250
Query: 210 --------ESTADKTRFNNV--YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259
+K+R V Y+KNL ET ++ LK+ F FG I+ VM + G+ K
Sbjct: 251 ELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGK 309
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYV--GKAQKK 297
FG V F ++A ++V+ +NG+ K +V G+A+++
Sbjct: 310 GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 349
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 233/357 (65%), Gaps = 8/357 (2%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYV 223
G S+GY +V FD+ +A AI +NG+ LN++QV+ +R T D+ F NV+V
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYRAAEVR------TRDRATFTNVFV 194
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KN + ++ LK IF E+G S V+RDA GKSK FGFV ++ + A ++V L+GK
Sbjct: 195 KNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKS 254
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I D+KLKE FS
Sbjct: 255 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDETIDDEKLKEEFS 314
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FG+I+ KVM + G +G G V +S+ EEA+KA+ EMNG+++ SKPL+V L Q +
Sbjct: 315 SFGSISRAKVMVEV-GQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVTLGQAR 370
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 147/276 (53%), Gaps = 26/276 (9%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ Y R E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY---------RAAEVR---- 182
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN D + D+KLK++FSE+G S KV+RD +G S+G GFV +
Sbjct: 183 -----TRDRATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRY 237
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 238 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 273
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 169/384 (44%), Positives = 240/384 (62%), Gaps = 24/384 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY F+ G ++S+RVCRD+ TRRSLGY Y+N+ + + +
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADGSEEVGR 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSI---DNKALHDTFSTFGNILSC 157
GK Y R+ GA ++ + S+ + G ++
Sbjct: 72 -------GKHF---YQEHGRVHRQQGAVRHLLRIREHSVLQGKGQRCQGLCRDAGGDVTG 121
Query: 158 KVA-----TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+ A D G S+GYGFV F+ EE+A AI+ +NGMLLND++VFVG F ++ERE
Sbjct: 122 RTALFQVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEE 180
Query: 213 --ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
+ +F NVY+KN E T++ LK++F FG S VM+D G+S+ FGFVNF
Sbjct: 181 LGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHG 240
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA ++V+ +NG + + K YVG+AQK+ ER+ ELK KFE ++ +++G+NLYVKNLD
Sbjct: 241 DAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLD 300
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D I D++L++ F+ +GTITS KVM D P SRG GFV FS+ EEA+KA+TEMNG++V +
Sbjct: 301 DGIDDERLRKEFAPYGTITSAKVMTDGPQ--SRGFGFVCFSSPEEATKAVTEMNGRIVAT 358
Query: 390 KPLYVALAQRKEERRARLQAQFSQ 413
KPLYVALAQR+EER+A L ++ Q
Sbjct: 359 KPLYVALAQRREERKAILTNKYMQ 382
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 141/261 (54%), Gaps = 24/261 (9%)
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-- 128
VC + R S GYG+V++ A RA++ +N LN + + + +++ R+ G
Sbjct: 129 VCDE---RGSKGYGFVHFETEEAANRAIETMNGMLLNDRKV-FVGNFKSRKEREEELGSK 184
Query: 129 -----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
N++IKN + ++ L + FS FG LS +V D G+SRG+GFV F + A+
Sbjct: 185 ALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQK 244
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTT 231
A+D++NG LN K ++VG ++ ER+ + R+ N+YVKNL +
Sbjct: 245 AVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGID 304
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ L+K F +G ITS VM D +S+ FGFV F P++A ++V +NG+ K YV
Sbjct: 305 DERLRKEFAPYGTITSAKVMTDGP-QSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 363
Query: 292 GKAQKKYEREMELKGKFEQSL 312
AQ++ ER+ L K+ Q L
Sbjct: 364 ALAQRREERKAILTNKYMQRL 384
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 112/208 (53%), Gaps = 23/208 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + D +L ++F+ G+ +SVRV +D RS G+G+VN+ +A +A+D
Sbjct: 189 TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHGDAQKAVD 247
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N T LNGK I R + I++ N+++KNLD ID++
Sbjct: 248 EMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDER 307
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L F+ +G I S KV TD QSRG+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 308 LRKEFAPYGTITSAKVMTDG-PQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 366
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTT 231
R++ER++ N Y++ L+ T
Sbjct: 367 QRREERKAI-----LTNKYMQRLATLRT 389
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD ++D +L F G + S +V D R G+G+V +++ EA
Sbjct: 287 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTDGPQSR--GFGFVCFSSPEEA 344
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
T+A+ E+N + KP+ + + R RK+ N +++ L
Sbjct: 345 TKAVTEMNGRIVATKPLYVALAQRREE-RKAILTNKYMQRL 384
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/383 (43%), Positives = 239/383 (62%), Gaps = 34/383 (8%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +
Sbjct: 4 APKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF +NGK IR+M+S RD +R+SG GN
Sbjct: 64 AQKALDTMNFDVVNGKSIRLMWSQRDAYLRRSGIGN------------------------ 99
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
V +D G S+GY FV F N+ +A AI+++NG L D +VFVG F +++RE+
Sbjct: 100 -----VMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAEL 153
Query: 214 DKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
F NVY+KN E ++ LK++F ++G S VM D+ GKSK FGFV+FD+ +
Sbjct: 154 RNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEA 213
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + + +VG+AQKK ER+ ELK FEQ KE +G+ LY+KNLDD
Sbjct: 214 AKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDD 273
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+I+ KVM++ G S+G G + FS+ EEA+KA+TEMNG ++ SKP
Sbjct: 274 TIDDEKLRKEFSSFGSISRVKVMQE-GGQSKGFGLICFSSLEEATKAMTEMNGHILGSKP 332
Query: 392 LYVALAQRK-EERRARLQAQFSQ 413
L +ALA R ER+ L Q+ Q
Sbjct: 333 LSIALAHRHYXERKIYLTRQYLQ 355
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 150/290 (51%), Gaps = 45/290 (15%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N K + L +R++ ++ NV
Sbjct: 71 MNFDVVNGKSIR----LMWSQRDAYLRRSGIGNV-------------------------- 100
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
M D G SK + FV+F + A R++E +NG++ D + +VG+ + + +RE EL+ K
Sbjct: 101 ---MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRNK 156
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + + D+KLKE+FS++G S KVM D +G S+G GFV
Sbjct: 157 --------AGEF--TNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFV 206
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
+F E A KA+ EMNGK + + ++V AQ+K ER+A L+ F Q++
Sbjct: 207 SFDNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKE 256
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 244/378 (64%), Gaps = 8/378 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVGDL V +++LY+ FN G V SVRVCRD+ T+ SLGYGYVN+ +A +
Sbjct: 28 SASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKV 87
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ NF L G+P+RIM+S RDPT R+SG GNIFIKNL +DNKAL+DTF FG +LSC
Sbjct: 88 YEAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGTVLSC 147
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
+V D G SRG FVQ+++ E AK I ++N + DK V V + +++R A++T+
Sbjct: 148 RVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDKVVKVEAYKPRRQRMLEAEETQ 207
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NV+ KN++ +++D+ K F FG I S V++ D + +GFV + D DA ++
Sbjct: 208 KNFTNVFFKNVAADISDEDIMKEFENFGEIESK-VLKSHDQFGR-YGFVAYKDTADAQKA 265
Query: 276 VEALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
V LN K D + YV +AQ+K ER L+ +FE+ E K++ NLY+KN + +
Sbjct: 266 VSELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSEDV 325
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPL 392
++D+L+++F +GTI S +V++D +G SR GFV FS+ EEA++A+ EMNG+M KPL
Sbjct: 326 TEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKPL 385
Query: 393 YVALAQRKEERRARLQAQ 410
YV+ + KEER +Q Q
Sbjct: 386 YVSRFRNKEERAQEVQRQ 403
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 24/199 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNYNAAHEATRAL 98
T+++ ++ ++D + F G++ S + L + G YG+V Y +A +A+
Sbjct: 211 TNVFFKNVAADISDEDIMKEFENFGEIES----KVLKSHDQFGRYGFVAYKDTADAQKAV 266
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGA------------------GNIFIKNLDKSID 140
ELN PL ++ + + G N++IKN + +
Sbjct: 267 SELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSEDVT 326
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVF 199
L F +G I+S +V D GQSR +GFV F +EE A AI ++NG + D K ++
Sbjct: 327 EDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKPLY 386
Query: 200 VGPFLRKQERESTADKTRF 218
V F K+ER + R
Sbjct: 387 VSRFRNKEERAQEVQRQRM 405
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 174/409 (42%), Positives = 256/409 (62%), Gaps = 37/409 (9%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS++VGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVFVGDLPVDLPRPEEAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LNFT + G+ IR+M++ RDP RKSGA NIF+K LD ++ KAL FS G +LS
Sbjct: 68 IDALNFTGIAPGRYIRVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ + AK+A+D +NG + D +V V PF+R+ +RE+ A K+
Sbjct: 128 CKVALDSEGHSKGYGFVQFETADGAKAALD-MNGAKVGDSEVEVAPFVRRVDREAMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN+ T TE D++ +FG +TS + A +K F F++ + A +++
Sbjct: 187 -FRNIYIKNIKATATEVDMRTTLEKFGKVTSLFLAEHAPFLTK-FALAVFEEHEAAVKAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE--GLNLYVKNL 329
LN G + + V +A K ER+ E K+TA ++ G NLYVK+L
Sbjct: 245 AELNESEESGLTEEAVKLVVCRALSKSERDRE--------RKKTASLYQNHGRNLYVKHL 296
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D I+DDKL+E+F+ FG ITSC +MR+ NG RG FV F + A+ A+ E+NG+ + S
Sbjct: 297 PDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMRELNGRSLES 356
Query: 390 --KPLYVALAQRK-------EERRARLQAQFSQMRPPVG------PRMP 423
KPLYV+ A++K ++RRA ++ Q ++M PP+ PR P
Sbjct: 357 SKKPLYVSQAEQKDMRIRLLQQRRAAMRHQ-TRMAPPMNTFPQQWPRQP 404
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 248/403 (61%), Gaps = 21/403 (5%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS+YVGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LN+T + G+ IR+M+S RDP RKSG N+F+K LD +I+ K L FS G +LS
Sbjct: 68 IDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFSKCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ + K+A++ +NG L D +V V PF+R+ +RE+ A K+
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGTKAALE-MNGSKLGDSEVVVAPFVRRVDREAMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN++ + TE D+K I EFG + S + A +K F V F++ A +++
Sbjct: 187 -FRNIYIKNITASATEADVKAIVEEFGKVDSLFLSEHARFPTK-FALVAFEEHQAAVQAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
ALN G + V +A K ER+ E K SL + G NLY+K+L D
Sbjct: 245 AALNESEESGLTEKAVKLVVCRALSKSERDREKKKA--ASLYQN----HGRNLYIKHLPD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VS 389
I+DD+L+E+F FG ITSC +M++PNG +G FV F + AS AL +NG + +
Sbjct: 299 DITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAALRSLNGHPLEHSA 358
Query: 390 KPLYVALAQRKEERRARLQAQFSQMRPP--VGPRMPMYPPVAP 430
KPLYV+ A++K+ R LQ + + MR + P M +P P
Sbjct: 359 KPLYVSHAEQKDMRIRLLQQRRAAMRHQSRMAPLMNTFPQQWP 401
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 171/396 (43%), Positives = 247/396 (62%), Gaps = 27/396 (6%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS+YVGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LN+T + G+ IR+M+S RDP RKSG N+F+K LD +I+ K L F+ G +LS
Sbjct: 68 IDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ E AK+A+D +NG L D +V V PF+R+ +RE A K+
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN++ TE D+K +FG + S + A +K F V F++ + A +++
Sbjct: 187 -FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVQAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
ALN G + V +A K ER+ E K SL + G NLYVK+L D
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDREKKKA--ASLYQN----HGRNLYVKHLPD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VS 389
I+DD+L+E+F FG ITSC +M++PNG +G FV F + AS AL +NG+ +
Sbjct: 299 DITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEHSK 358
Query: 390 KPLYVALAQRK-------EERRARLQAQFSQMRPPV 418
KPLYV+ A++K ++RRA ++ Q S+M PP+
Sbjct: 359 KPLYVSHAEQKDMRIRLLQQRRAAMRHQ-SRMVPPM 393
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 172/396 (43%), Positives = 246/396 (62%), Gaps = 27/396 (6%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS+YVGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LN+T + G IR+M+S RDP RKSG N+F+K LD +I+ K L F+ G +LS
Sbjct: 68 IDALNYTGIAPGLQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ E AK+A+D +NG L D +V V PF+R+ +RE A K+
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KN++ TE D+K +FG + S + A +K F V F++ + A +++
Sbjct: 187 -FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVQAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
ALN G + V +A K ER+ E K SL + G NLYVK+L D
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDREKKKA--ASLYQN----HGRNLYVKHLPD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VS 389
I+DDKL+E+F FG ITSC +M++PNG +G FV F + AS AL +NG+ +
Sbjct: 299 DITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEHSK 358
Query: 390 KPLYVALAQRK-------EERRARLQAQFSQMRPPV 418
KPLYV+ A++K ++RRA ++ Q S+M PP+
Sbjct: 359 KPLYVSHAEQKDMRIRLLQQRRAAMRHQ-SRMVPPM 393
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/278 (51%), Positives = 191/278 (68%), Gaps = 7/278 (2%)
Query: 20 PATNGIANNGGVGDARQ-----FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
P ++ ANN V S SLYVG+L+ SV ++ L++LF+ +G V S+RVCRD
Sbjct: 28 PTSDSDANNSSVAAPHSAPHNSHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRD 87
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
TRRSLGY YVNYN + RAL+ELN+T + G+P RIM+S RDP +RK+G GN+FIKN
Sbjct: 88 AVTRRSLGYSYVNYNNTADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKN 147
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD +IDNKALHDTF+ FGNILSCKVA D SRGYGFV ++ E+A +AI +NGMLLN
Sbjct: 148 LDTAIDNKALHDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLN 207
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+K+VFVG + K++R+S D K F NVYVKN+ T+++ + +F +G ITS ++ R
Sbjct: 208 EKKVFVGHHIPKKDRQSKFDEMKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSR 267
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
D DG S+ FGFVNF + AA++VE L+ + + Y
Sbjct: 268 DQDGVSRGFGFVNFQEHQHAAKAVEELHESELKGQTLY 305
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 157/312 (50%), Gaps = 28/312 (8%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ L+ S+ L + FST GN+ S +V D++ + S GY +V ++N + A+
Sbjct: 52 SASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERAL 111
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 112 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 167
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S V +D S+ +GFV+++ + A +++ +NG ++K+ +VG K +R+
Sbjct: 168 LSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFD 227
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
E+K F N+YVKN+D ++D++ + +F +G ITS + RD +G+SR
Sbjct: 228 EMKANF-------------TNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSR 274
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLY-VALAQRKEERRARLQAQFSQMRPPVG-- 419
G GFV F + A+KA+ E++ + + LY + L + R + ++ S R
Sbjct: 275 GFGFVNFQEHQHAAKAVEELHESELKGQTLYPLELRKLASTRVSICTSRISMTRSTTSVS 334
Query: 420 ----PRMPMYPP 427
PRM + P
Sbjct: 335 ARSLPRMELSLP 346
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V ++ LY++FN +G V+S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDK+IDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NGM L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN +T TE LK++F +G ITS V +D K++ F F+N+ D D A ++
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK +
Sbjct: 249 ENLNGKKITE 258
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 220/410 (53%), Gaps = 36/410 (8%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD ++++ L+D F+ G ++S +V D +S YG+V+Y A
Sbjct: 99 RKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESA 157
Query: 95 TRALDELNFTPLNGKPIRIMYSYR--DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
A++++N L K + + + + + + N+++KN ++ L FS +G
Sbjct: 158 KEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYG 217
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERES 211
I S V +D+ ++R + F+ + + +SA++A++ LNG + D ++ +K+E E
Sbjct: 218 EITSMIVKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEESEK 275
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA---DGKSKCFGFVNF-- 266
A++ NN + TT+E +K + + +A +DA + ++ G
Sbjct: 276 AANENYNNNNTTSEENATTSETPAEKKTTD----SESATNKDATPGEDQTSANGTTTTVT 331
Query: 267 --------DDPDD--AARSVEALNGKKFDDKE----------WYVGKAQKKYEREMELKG 306
+ P+D A + A +K D K+ YVG Q + R LK
Sbjct: 332 STTDAKTEETPNDNTANAGINASITEKKDKKKSGESTETPNILYVGPHQSRARRHAILKA 391
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
KF+ E+ +K G+NLY+KNLDDS++D LKELF +GTITS KVM+D S+G GF
Sbjct: 392 KFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGF 451
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP 416
V F T EEA+KA+TEM+ K++ KPLYV LA+++E R +RLQ +F +M P
Sbjct: 452 VCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQQRF-RMNP 500
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 144/267 (53%), Positives = 193/267 (72%), Gaps = 8/267 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V ++ LY++FN +G V+S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDK+IDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NGM L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN +T TE LK++F +G ITS V +D K++ F F+N+ D D A ++
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREME 303
E LNGKK + GK Y+ + E
Sbjct: 249 ENLNGKKITED----GKIDHNYDPKKE 271
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 219/408 (53%), Gaps = 39/408 (9%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD ++++ L+D F+ G ++S +V D +S YG+V+Y A
Sbjct: 99 RKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESA 157
Query: 95 TRALDELNFTPLNGKPIRIMYSYR--DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
A++++N L K + + + + + + N+++KN ++ L + FS +G
Sbjct: 158 KEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYG 217
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERES 211
I S V +D+ ++R + F+ + + +SA++A++ LNG + D ++ +K+E E
Sbjct: 218 EITSMIVKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDHNYDPKKEEAEK 275
Query: 212 TADKTRFNNVYVKN--LSETTTEDDLKKIFGEFGIITSTAVMRDA---DGKSKCFGFVNF 266
A++ N +N SET E KK E +A +DA + ++ G
Sbjct: 276 AANENSNNTTSEENAATSETPAE---KKTDSE------SATNKDATTGEDQTSANGTTTT 326
Query: 267 DDPDDAARSVEALN--------GKKFDDKE----------WYVGKAQKKYEREMELKGKF 308
A++ EA N +K D K+ YVG Q + R LK KF
Sbjct: 327 VTSTTDAKTEEATNDSTANAATAEKKDSKKSGESTETPNILYVGPHQSRARRHALLKAKF 386
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+ E+ +K G+NLY+KNLDDS+ D LKELF +GTITS KVM+D S+G GFV
Sbjct: 387 DTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVC 446
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP 416
F T EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ +F +M P
Sbjct: 447 FGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHP 493
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/248 (57%), Positives = 188/248 (75%), Gaps = 3/248 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL L V ++ LY+ F+Q G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 ASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 71
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N+ P+ G+PIRIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 TMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER-ESTADKTR- 217
+ + G S+GYGFV F+ EE+ AI+K+NGMLLNDK+VFVG FL + ER + ++ R
Sbjct: 132 SCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQ 190
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN + E L+ +F ++G++ S AVMRD DG S+ FGFV +D ++A +VE
Sbjct: 191 FTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVE 250
Query: 278 ALNGKKFD 285
A+NG++ +
Sbjct: 251 AMNGQEIE 258
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 137/260 (52%), Gaps = 16/260 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + + + +R+ + K+ N+++KNL ++ L F FG I S
Sbjct: 73 MNYDPIKGRPIRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V + +G SK +GFV+F+ + R++E +NG +DK+ +VGK + ER ++ +
Sbjct: 129 CKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGER 187
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
Q N+Y+KN D + L+ +F ++G + S VMRD +G SRG GFV
Sbjct: 188 VRQFT----------NVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFV 237
Query: 368 AFSTAEEASKALTEMNGKMV 387
A+ + EEA A+ MNG+ +
Sbjct: 238 AYDSHEEAQAAVEAMNGQEI 257
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F + G + S V RD +S + +VNF P DA R+++
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 73 MNYDPIKGRPIRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 116
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV + NG S+G GFV F T E +A+ ++NG ++ K ++V
Sbjct: 117 YDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFL 175
Query: 399 RKEERRARLQAQFSQ 413
+ ER ++ + Q
Sbjct: 176 TRSERIKKMGERVRQ 190
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 141/250 (56%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSGAGNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE LK++F FG ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIV--KTDNKNRKFCFINYADSESAKNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 122/219 (55%), Gaps = 24/219 (10%)
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG--KKFDDKE-------WYVGKAQKK 297
+T+ A+GK G D +AA EA G KK E YVG Q +
Sbjct: 369 ATSTDAAANGKEDAAG----SDATNAAAQGEATTGSSKKESGSENADSPNILYVGPHQSR 424
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
R LK KF+ E+ +K +G+NLY+KNLDD+I D LKELF +GTITS KVMRD
Sbjct: 425 ARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDD 484
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
S+G GFV F+ EEA++A+TEM+ K++ KPLYV LA+++E+R +RLQ +F P
Sbjct: 485 KEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRMH--P 542
Query: 418 VGPRM------PM-YP-PVAPGLG-QQLFYGQGPPIIPP 447
+ M PM YP P +P L Q G P+I P
Sbjct: 543 IRHHMNNALNSPMQYPNPQSPQLQFNQNTLNYGRPVITP 581
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 144/278 (51%), Gaps = 28/278 (10%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L++ + L++ F+T G++ S +V DS+ +S GY +V + N A+ A+D L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + + L R+ + K+ N++VKNL ++ L F FG I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V D GKSK +GFV+++D + A ++E +NG + K YVG KK ER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER-------- 185
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+ +T KF NLYVKN DS+++ LK+LFS FG ITS V D +R F+
Sbjct: 186 --ATNDT--KF--TNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTD--NKNRKFCFIN 237
Query: 369 FSTAEEASKALTEMNGKMVVS----KPLYVALAQRKEE 402
++ +E A A+ +NGK + P Y A +KEE
Sbjct: 238 YADSESAKNAMENLNGKKITDDGQIDPTYDA---KKEE 272
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + + + + SL+++ N++VKNLD SI + L
Sbjct: 78 NYTNIKGQPARLMWSHR------------DPSLRKSG----AGNIFVKNLDKSIDNKALF 121
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV +
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIK 181
Query: 400 KEER 403
K ER
Sbjct: 182 KSER 185
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 12/123 (9%)
Query: 198 VFVGPFLRKQERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++VGP + R + + +K + N+Y+KNL + + LK++F +G I
Sbjct: 416 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 475
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
TS VMRD +SK FGFV F ++A R+V ++ K + K YVG A+K+ +R L+
Sbjct: 476 TSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Query: 306 GKF 308
+F
Sbjct: 536 QRF 538
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L + F +G I S KV D QS+G+GFV F +E A A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEM 509
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
+ ++N K ++VG ++++R S
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLS 532
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ +LD +++D L +LF G + S +V RD +S G+G+V + EA RA+ E
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFALQEEANRAVTE 508
Query: 101 LNFTPLNGKPIRI 113
++ +NGKP+ +
Sbjct: 509 MHLKIINGKPLYV 521
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEA 375
F +LYV +L++ +++ L E+F+ G ++S +V RD ++R G +V + +A
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRD--SVTRKSLGYAYVNYHNLADA 70
Query: 376 SKALTEMNGKMVVSKPLYVALAQR 399
+AL +N + +P + + R
Sbjct: 71 ERALDTLNYTNIKGQPARLMWSHR 94
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V ++ LY++FN +G V+S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDK+IDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NGM L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN +T TE LK++F +G ITS V +D K++ F F+N+ D D A ++
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK +
Sbjct: 249 ENLNGKKITE 258
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 215/418 (51%), Gaps = 49/418 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD ++++ L+D F+ G ++S +V D +S YG+V+Y A
Sbjct: 99 RKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESA 157
Query: 95 TRALDELNFTPLNGKPIRIMYSYR--DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
A++++N L K + + + + + + N+++KN ++ L FS +G
Sbjct: 158 KEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYG 217
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRKQERES 211
I S V +D+ ++R + F+ + + +SA++A++ LNG + D ++ +K+E E
Sbjct: 218 EITSMIVKSDN--KNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEETEK 275
Query: 212 TA---------------------DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
A +K ++ N T ED G T+
Sbjct: 276 PANENSNNNTTTEENTTTSETPAEKKTPDSEPATNKDATPGEDQT----SANGTTTTVTS 331
Query: 251 MRDADGKSKCFGFVNFDDPDD--AARSVEALNGKKFDDKE----------WYVGKAQKKY 298
DA+ SK + P+D A A +K D+K+ YVG Q +
Sbjct: 332 TTDANPDSKTE-----ETPNDNTANAGTNASTTEKKDNKKSGENTETPNILYVGPHQSRA 386
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
R LK KF+ E+ +K G+NLY+KNLDDS++D LKELF +GTITS KVM+D
Sbjct: 387 RRHAILKAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDK 446
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP 416
S+G GFV F T EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ +F +M P
Sbjct: 447 DQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHP 503
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/308 (47%), Positives = 200/308 (64%), Gaps = 30/308 (9%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL + ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+PIRIM+S RDP++RKSG GN+FIKNLDK+IDNKA++DTFS FGN
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV F+ EE+A +IDK+NGMLLN K+V+VG F+ ++ERE
Sbjct: 125 ILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKEL 184
Query: 214 DKT------------------------RFN-----NVYVKNLSETTTEDDLKKIFGEFGI 244
+ R N N+YVKNL +T ++ L+K F FG
Sbjct: 185 GEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGT 244
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VM + +G+SK FGFV F P++A ++V +NG+ K YV AQ+K +R+ L
Sbjct: 245 ITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHL 303
Query: 305 KGKFEQSL 312
++ Q +
Sbjct: 304 ASQYMQRM 311
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 181/304 (59%), Gaps = 23/304 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L I L + FS+ G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ + + + +R+ + K+ NV++KNL + + F FG I
Sbjct: 71 TMNFDMIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE----- 301
S V +D G SK +GFV+F+ + A +S++ +NG + K+ YVGK + ERE
Sbjct: 127 SCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGE 186
Query: 302 ------------MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
ELK KFEQ E ++++G+NLYVKNLDD+I D++L++ F+ FGTIT
Sbjct: 187 KAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTIT 246
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S KVM + G S+G GFV FS EEA+KA+TEMNG++V SKPLYVALAQRKE+R+A L +
Sbjct: 247 SAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLAS 305
Query: 410 QFSQ 413
Q+ Q
Sbjct: 306 QYMQ 309
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 171/407 (42%), Positives = 247/407 (60%), Gaps = 33/407 (8%)
Query: 40 TSLYVGDL--DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TS+YVGDL DL + + +LF+ + VVSV+VCRD++T+RSLGYGYVN+ +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADAEKV 67
Query: 98 LDELNFTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
+D LN+T + G+ IR+M+S RDP RKSG N+F+K LD +++ K L F+ G +LS
Sbjct: 68 IDALNYTGITPGRQIRVMFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGRVLS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVA DS G S+GYGFVQF+ + AK+A++ ++G L D +V V PFLR+ +RE A K+
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGAKAALE-MDGSKLGDCEVVVAPFLRRVDREVMAAKS 186
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+Y+KNL T E D+K FG + S + A +K F V F++ + A +++
Sbjct: 187 -FRNIYIKNLKATVAEADVKTTVETFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVKAI 244
Query: 277 EALN-----GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
ALN G + V +A K ER+ E K SL + G NLYVK+L D
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDREKKKA--ASLYQN----HGRNLYVKHLPD 298
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VS 389
I+DD+L+E+F+ FG ITSC +M++PNG +G FV F + AS AL +NG +
Sbjct: 299 DITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGHSLDNSK 358
Query: 390 KPLYVALAQRK-------EERRARLQAQFSQMRPPVG------PRMP 423
K LYV+ A++K ++RRA ++ Q S+M PP+ PR P
Sbjct: 359 KLLYVSQAEQKDMRIRLLQQRRAAMRHQ-SRMAPPMNTFPQQWPRHP 404
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/283 (51%), Positives = 198/283 (69%), Gaps = 5/283 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSG GNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VGPF++K ER + + T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE L+++F +G ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIV--KMDNKNRKFCFINYADAESAKNAM 248
Query: 277 EALNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
+ LNGKK DD + KK E G Q+ ADK
Sbjct: 249 DNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 99/163 (60%), Gaps = 7/163 (4%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG Q + R LK KF+ E +K +G+NLY+KNLDD I D L+ELF FGTIT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S KVMRD S+G GFV F++ EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 537
Query: 410 QF------SQMRPPVGPRMPMYPPVAPGLG-QQLFYGQGPPII 445
+F M P+ M P +P L Q G P+I
Sbjct: 538 RFRMHPIRHHMNNPLNTPMQYASPQSPQLQFSQNTLSYGRPVI 580
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 21/260 (8%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L++ + L++ F+T G++ S +V DS+ +S GY +V + N A+ A+D L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + + L R+ + K+ N++VKNL ++ L F FG I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V D GKSK +GFV+++D + A ++E +NG + K YVG KK ER KF
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATN-DTKF 192
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
NLYVKN DS+++ L++LF+ +G ITS V D +R F+
Sbjct: 193 -------------TNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMD--NKNRKFCFIN 237
Query: 369 FSTAEEASKALTEMNGKMVV 388
++ AE A A+ +NGK +
Sbjct: 238 YADAESAKNAMDNLNGKKIT 257
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + + + + SL+++ N++VKNLD SI + L
Sbjct: 78 NYTNIKGQPARLMWSHR------------DPSLRKSGTG----NIFVKNLDKSIDNKALF 121
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV +
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIK 181
Query: 400 KEER 403
K ER
Sbjct: 182 KSER 185
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 15/168 (8%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD S+++ L+D F+ G ++S +V D +S YG+V+Y A
Sbjct: 99 RKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESA 157
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDT 147
A++++N L K + Y P I+KS N+++KN S+ L
Sbjct: 158 KEAIEKVNGVQLGSKNV-----YVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQL 212
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
F+ +G I S V D+ ++R + F+ + + ESAK+A+D LNG + D
Sbjct: 213 FNPYGEITSMIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITD 258
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 198 VFVGPFLRKQERESTADKTRFNNV-------------YVKNLSETTTEDDLKKIFGEFGI 244
++VGP + R + K +F+N+ Y+KNL + + L+++F FG
Sbjct: 417 LYVGPHQSRARRHAIL-KAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VMRD +SK FGFV F ++A ++V ++ K + K YVG A+K+ +R L
Sbjct: 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 535
Query: 305 KGKF 308
+ +F
Sbjct: 536 QQRF 539
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD ID+ L + F FG I S KV D QS+G+GFV F ++E A A+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
+ ++N K ++VG ++++R S
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLS 533
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
N V + + +LY+ +LD ++D L +LF G + S +V RD +S G+G+V
Sbjct: 438 NLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVC 496
Query: 88 YNAAHEATRALDELNFTPLNGKPIRI 113
+ + EA +A+ E++ +NGKP+ +
Sbjct: 497 FASQEEANKAVTEMHLKIINGKPLYV 522
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEA 375
F +LYV +L++ +++ L E+F+ G ++S +V RD ++R G +V + +A
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRD--SVTRKSLGYAYVNYHNLADA 70
Query: 376 SKALTEMNGKMVVSKPLYVALAQR 399
+AL +N + +P + + R
Sbjct: 71 ERALDTLNYTNIKGQPARLMWSHR 94
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSGAGNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VG F++K ER + + T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE LK++F +G ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTETHLKELFSPYGEITSMIV--KTDNKNRKFCFINYADSESAKNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 11/167 (6%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG Q + R LK KF+ E+ +K +G+NLY+KNLDD+I D LKELF +GTIT
Sbjct: 417 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 476
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S KVMRD S+G GFV F+ EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 477 SAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 536
Query: 410 QFSQMRPPVGPRM------PM-YP-PVAPGLG-QQLFYGQGPPIIPP 447
+F P+ M PM YP P +P L Q G P++ P
Sbjct: 537 RFRMH--PIRHHMNNALNSPMQYPNPQSPQLQFNQNTLNYGRPVLTP 581
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 23/261 (8%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L++ + L++ F+T G++ S +V DS+ +S GY +V + N A+ A+D L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + + L R+ + K+ N++VKNL ++ L F FG I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V D GKSK +GFV+++D + A ++E +NG + K YVG KK ER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERA------- 186
Query: 309 EQSLKETAD-KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D KF NLYVKN DS+++ LKELFS +G ITS V D +R F+
Sbjct: 187 ------TNDTKF--TNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTD--NKNRKFCFI 236
Query: 368 AFSTAEEASKALTEMNGKMVV 388
++ +E A A+ +NGK +
Sbjct: 237 NYADSESAKNAMENLNGKKIT 257
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + + + + SL+++ N++VKNLD SI + L
Sbjct: 78 NYTNIKGQPARLMWSHR------------DPSLRKSG----AGNIFVKNLDKSIDNKALF 121
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV +
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIK 181
Query: 400 KEER 403
K ER
Sbjct: 182 KSER 185
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 12/123 (9%)
Query: 198 VFVGPFLRKQERES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++VGP + R + + +K + N+Y+KNL + + LK++F +G I
Sbjct: 416 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 475
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
TS VMRD +SK FGFV F ++A ++V ++ K + K YVG A+K+ +R L+
Sbjct: 476 TSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Query: 306 GKF 308
+F
Sbjct: 536 QRF 538
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L + F +G I S KV D QS+G+GFV F +E A A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
+ ++N K ++VG ++++R S
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLS 532
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ +LD +++D L +LF G + S +V RD +S G+G+V + EA +A+ E
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFALQEEANKAVTE 508
Query: 101 LNFTPLNGKPIRI 113
++ +NGKP+ +
Sbjct: 509 MHLKIINGKPLYV 521
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEA 375
F +LYV +L++ +++ L E+F+ G ++S +V RD ++R G +V + +A
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRD--SVTRKSLGYAYVNYHNLADA 70
Query: 376 SKALTEMNGKMVVSKPLYVALAQR 399
+AL +N + +P + + R
Sbjct: 71 ERALDTLNYTNIKGQPARLMWSHR 94
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 139/250 (55%), Positives = 187/250 (74%), Gaps = 4/250 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL+ V ++ LY++FN +G V S+RVCRD TR+SLGY YVNY+ +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD LN+T + G+P R+M+S+RDP++RKSGAGNIF+KNLDKSIDNKAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CKVATD G+S+ YGFV +++EESAK AI+K+NG+ L K V+VG F+++ ER + + T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERAT--NDT 190
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+F N+YVKN ++ TE LK++F +G ITS V D K++ F F+N+ D + A ++
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIV--KTDNKNRKFCFINYADSESAKNAM 248
Query: 277 EALNGKKFDD 286
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 11/167 (6%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG Q + R LK KF+ E+ +K +G+NLY+KNLDD+I D LKELF +GTIT
Sbjct: 408 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 467
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S KVMRD S+G GFV F+ EEA+KA+TEM+ K++ KPLYV LA+++E+R +RLQ
Sbjct: 468 SAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 527
Query: 410 QFSQMRPPVGPRM------PM-YP-PVAPGLG-QQLFYGQGPPIIPP 447
+F P+ M PM YP P +P L Q G P++ P
Sbjct: 528 RFRMH--PIRHHMNNALNSPMQYPNPQSPQLQFNQNTLNYGRPVLTP 572
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 136/261 (52%), Gaps = 23/261 (8%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDKL 188
+++ +L++ + L++ F+T G++ S +V DS+ +S GY +V + N A+ A+D L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + + L R+ + K+ N++VKNL ++ L F FG I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V D GKSK +GFV+++D + A ++E +NG + K YVG K+ ER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERA------- 186
Query: 309 EQSLKETAD-KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T D KF NLYVKN DS+++ LK+LFS +G ITS V D +R F+
Sbjct: 187 ------TNDTKF--TNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTD--NKNRKFCFI 236
Query: 368 AFSTAEEASKALTEMNGKMVV 388
++ +E A A+ +NGK +
Sbjct: 237 NYADSESAKNAMENLNGKKIT 257
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+E TE L +IF G ++S V RD+ KS + +VN+ + DA R+++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + + + + SL+++ N++VKNLD SI + L
Sbjct: 78 NYTNIKGQPARLMWSHR------------DPSLRKSG----AGNIFVKNLDKSIDNKALF 121
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D G S+ GFV + E A +A+ ++NG + SK +YV +
Sbjct: 122 DTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIK 181
Query: 400 KEER 403
+ ER
Sbjct: 182 RSER 185
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + +++V +LD S+++ L+D F+ G ++S +V D +S YG+V+Y A
Sbjct: 99 RKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESA 157
Query: 95 TRALDELNFTPLNGKPIRIMYSYR--DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
A++++N L K + + + + + + N+++KN S+ L FS +G
Sbjct: 158 KEAIEKVNGIQLGSKNVYVGHFIKRSERATNDTKFTNLYVKNFPDSVTEAHLKQLFSPYG 217
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
I S V TD+ ++R + F+ + + ESAK+A++ LNG + D
Sbjct: 218 EITSMIVKTDN--KNRKFCFINYADSESAKNAMENLNGKKITD 258
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L + F +G I S KV D QS+G+GFV F +E A A+ ++
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
+ ++N K ++VG ++++R S
Sbjct: 501 HLKIINGKPLYVGLAEKREQRLS 523
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+ +LD +++D L +LF G + S +V RD +S G+G+V + EA +A+ E
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFAQQEEANKAVTE 499
Query: 101 LNFTPLNGKPIRI 113
++ +NGKP+ +
Sbjct: 500 MHLKIINGKPLYV 512
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEA 375
F +LYV +L++ +++ L E+F+ G ++S +V RD ++R G +V + +A
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDS--VTRKSLGYAYVNYHNLADA 70
Query: 376 SKALTEMNGKMVVSKPLYVALAQR 399
+AL +N + +P + + R
Sbjct: 71 ERALDTLNYTNIKGQPARLMWSHR 94
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 143/260 (55%), Positives = 193/260 (74%), Gaps = 4/260 (1%)
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
+CKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 1 ACKVVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 59
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA
Sbjct: 60 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 119
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I
Sbjct: 120 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 179
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 180 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 238
Query: 394 VALAQRKEERRARLQAQFSQ 413
VALAQRKEER+A L Q+ Q
Sbjct: 239 VALAQRKEERQAHLTNQYMQ 258
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 150/263 (57%), Gaps = 21/263 (7%)
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSG 126
+ +V RD + S GYG+V++ A RA++++N LN + + + + R + G
Sbjct: 1 ACKVVRDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 58
Query: 127 A-----GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
A N++IKN + +D++ L D F FG LS KV TD G+S+G+GFV F+ E A
Sbjct: 59 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 118
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSET 229
+ A+D++NG LN KQ++VG +K ER++ + TR+ N+YVKNL +
Sbjct: 119 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 178
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
++ L+K F FG ITS VM + G+SK FGFV F P++A ++V +NG+ K
Sbjct: 179 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 237
Query: 290 YVGKAQKKYEREMELKGKFEQSL 312
YV AQ+K ER+ L ++ Q +
Sbjct: 238 YVALAQRKEERQAHLTNQYMQRM 260
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 61 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 117
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-----------------DPTIRKSGAGNIFIKNLD 136
A +A+DE+N LNGK I + + + D R G N+++KNLD
Sbjct: 118 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 176
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++NG ++ K
Sbjct: 177 DGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 235
Query: 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
++V RK+ER++ N Y++ ++
Sbjct: 236 PLYVALAQRKEERQA-----HLTNQYMQRMA 261
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/374 (42%), Positives = 238/374 (63%), Gaps = 34/374 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ + S+ VCRD +T RSLGY YVN+ H+A RA
Sbjct: 120 TSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAERA 179
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN++ ++GKP RIM+SYRDPT RK+ GN+F+KNL+K++DN L+D FS+FGNILSC
Sbjct: 180 LDTLNYSMIHGKPCRIMWSYRDPTKRKTNVGNVFVKNLEKAVDNAMLYDVFSSFGNILSC 239
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV + G S+GYG+V F+ ES+ AI+++NG L+ K +F PF+ K ER +K
Sbjct: 240 KVEYEK-GISKGYGYVHFETSESSGKAIERINGTLVLGKPIFCEPFVAKVERYKVENK-- 296
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR--S 275
V+ +N E+ T++ +++ +FG I + D+ GKSK G V F + +DA + +
Sbjct: 297 ---VFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQKLLA 353
Query: 276 VEA----LNGK--KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
VEA +NGK FD + + K ER EL+ K+T D+ L++ N+
Sbjct: 354 VEADSIQINGKPITFD-------RVKNKIERVTELR-------KKTTDQ----TLFLSNI 395
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D+SI + +KE FS+ G I CK+++D +G ++G GF+ FS EA+KAL +NG +
Sbjct: 396 DESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALNGFTFGN 455
Query: 390 KPLYVALAQRKEER 403
K + V+L+ KE++
Sbjct: 456 KQITVSLSSNKEQQ 469
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/243 (56%), Positives = 178/243 (73%), Gaps = 3/243 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD V ++ LY++FN + V SVR+CRD TRRSLGY YVNYN+ +A RA
Sbjct: 10 VSASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LNFT + +P RIM+ RDP R++ GN+F+KNLDKSIDNK L DTFS FGNI+SC
Sbjct: 70 LDTLNFTCIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSC 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ATDS G S GYGF+ F++ ESAK AI +LNGM+L D+ ++VG F RK ER S DKT
Sbjct: 130 KIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKDKT- 188
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVK++ +T +E+ L +FG +G I+S + D+ G+ FGFVNF+DP+ A ++V
Sbjct: 189 FTNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKGRP--FGFVNFEDPESAKKAVA 246
Query: 278 ALN 280
L+
Sbjct: 247 NLH 249
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/391 (32%), Positives = 209/391 (53%), Gaps = 47/391 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ L+D F+ G ++S ++ D S SLGYG++++ A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATD-SEGNSLGYGFIHFEHPESAKEAIAR 159
Query: 101 LNFTPLNGKPIRI--------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
LN L +PI + +S +D T N+++K++ K+ + LH F +G
Sbjct: 160 LNGMILGDRPIYVGKFQRKAERFSEKDKTFT-----NVYVKHIPKTWSEETLHTLFGVYG 214
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I S + +DS G R +GFV F++ ESAK A+ L+ L+ +G L E T
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFEDPESAKKAVANLHNALVTP----LGVELNSNNSERT 268
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
E+ +D L I T D ++ + +DP +A
Sbjct: 269 ---------------ESGKDDGLSSISSNTESSDETVESNDYKQRN------DKEDPQEA 307
Query: 273 --ARSVEALNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
++ + N FD YV +AQK+ ER++ LK + E + +E+ ++++G+NLYVKN
Sbjct: 308 DVEKNSDEENSVPFDVQPNRLYVSRAQKRNERQVVLKSQHEAA-RESQNRYQGVNLYVKN 366
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
L +S+++ L+ LF +GTI+S + D +GISRG GFV+F + +EA+KA+TEM+ K+V
Sbjct: 367 LSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEMHLKLVR 426
Query: 389 SKPLYVALAQRKEERRARLQAQF-SQMRPPV 418
KPLYV L +RKE+R RLQ + PPV
Sbjct: 427 GKPLYVGLHERKEQRALRLQQRIRGGTVPPV 457
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 22/278 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ +LD + L++ F++ + S ++ D+L + S GY +V +++ A+ A+
Sbjct: 11 SASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D LN + + + LR + + + NV+VKNL ++ L F FG I
Sbjct: 71 DTLNFTCIRSRPCRIMWCLR----DPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D++G S +GF++F+ P+ A ++ LNG D+ YVGK Q+K ER E
Sbjct: 127 MSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKD 186
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
F N+YVK++ + S++ L LF +G I+S + D G R G
Sbjct: 187 KTF-------------TNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKG--RPFG 231
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
FV F E A KA+ ++ +V PL V L ER
Sbjct: 232 FVNFEDPESAKKAVANLHNALVT--PLGVELNSNNSER 267
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 138/243 (56%), Positives = 179/243 (73%), Gaps = 3/243 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD V ++ LY++FN + V SVR+CRD TRRSLGY YVNYN+ +A RA
Sbjct: 10 VSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LNFT + G+P RIM+ RDP R++ GN+F+KNLDKSIDNK L DTFS FGNI+SC
Sbjct: 70 LDTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSC 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ATD G+S GYGF+ F++ +SAK AI +LNG +L D+ ++VG F +K ER S DKT
Sbjct: 130 KIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKT- 188
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVK++ ++ TED L KIFG +G I+S + D+ G+ FGFVNF++PD A +V
Sbjct: 189 FTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPDSAKAAVA 246
Query: 278 ALN 280
AL+
Sbjct: 247 ALH 249
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 213/390 (54%), Gaps = 42/390 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ L+D F+ G ++S ++ D+ + SLGYG++++ A A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGK-SLGYGFIHFEHADSAKEAISR 159
Query: 101 LNFTPLNGKPIRI--------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
LN L +PI + +S +D T N+++K++ KS L+ F +G
Sbjct: 160 LNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLLYKIFGVYG 214
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I S + +DS G R +GFV F+N +SAK+A+ L+ L+ V E +ST
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTPVGV---------ELDST 263
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA---VMRDADGKSKCFGFVNFDDP 269
A+ + N + +E K+ GE TA +D+ G S N D
Sbjct: 264 AETS------ADNEAGADSETSSKQESGEASNKKQTASSETSKDSSGTSNEEFAQNEDGS 317
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D S + YV +AQKK ER++ LK + E ++KE+ +++G+NLYVKNL
Sbjct: 318 ADKNVSAD------VQPNRLYVSRAQKKNERQVVLKSQHE-AVKESHQRYQGVNLYVKNL 370
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DSI+++ L+ +F FGT++S + D +G+SRG GFV+F + +EA+KA+TEM+ K+V
Sbjct: 371 ADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRG 430
Query: 390 KPLYVALAQRKEERRARLQAQF-SQMRPPV 418
KPLYV L +RKE+R RLQ + PPV
Sbjct: 431 KPLYVGLHERKEQRALRLQQRIRGGAVPPV 460
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 132/271 (48%), Gaps = 22/271 (8%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ +LD + L++ F++ + S ++ D+L + S GY +V +++ A+ A+
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D LN + + + LR D NV+VKNL ++ L F FG I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNND----GNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D +GKS +GF++F+ D A ++ LNG D+ YVGK QKK ER E
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKD 186
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
F N+YVK++ S ++D L ++F +G I+S + D G R G
Sbjct: 187 KTF-------------TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFG 231
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
FV F + A A+ ++ +V P+ V L
Sbjct: 232 FVNFENPDSAKAAVAALHNALVT--PVGVEL 260
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +L S+N+ L +F G V SV + D S S G+G+V++ + EA
Sbjct: 358 QRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESG-VSRGFGFVSFLSPDEA 416
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E++ + GKP+ + R
Sbjct: 417 TKAITEMHLKLVRGKPLYVGLHER 440
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 138/243 (56%), Positives = 179/243 (73%), Gaps = 3/243 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD V ++ LY++FN + V SVR+CRD TRRSLGY YVNYN+ +A RA
Sbjct: 10 VSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERA 69
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LNFT + G+P RIM+ RDP R++ GN+F+KNLDKSIDNK L DTFS FGNI+SC
Sbjct: 70 LDTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSC 129
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ATD G+S GYGF+ F++ +SAK AI +LNG +L D+ ++VG F +K ER S DKT
Sbjct: 130 KIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKT- 188
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVK++ ++ TED L KIFG +G I+S + D+ G+ FGFVNF++PD A +V
Sbjct: 189 FTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPDSAKAAVA 246
Query: 278 ALN 280
AL+
Sbjct: 247 ALH 249
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 42/390 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ L+D F+ G ++S ++ D+ + SLGYG++++ A A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGK-SLGYGFIHFEHADSAKEAISR 159
Query: 101 LNFTPLNGKPIRI--------MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
LN L +PI + +S +D T N+++K++ KS L+ F +G
Sbjct: 160 LNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLLYKIFGVYG 214
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
I S + +DS G R +GFV F+N +SAK+A+ L+ L+ V E +ST
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTPVGV---------ELDST 263
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA---VMRDADGKSKCFGFVNFDDP 269
A+ V N + +E K+ GE TA +D+ G S N D
Sbjct: 264 AETP------VDNEAGADSETSSKQESGEASNKKQTASGEASKDSSGTSNEESAQNEDGS 317
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
D S + YV +AQKK ER++ LK + E ++KE+ +++G+NLYVKNL
Sbjct: 318 ADKNVSAD------VQPNRLYVSRAQKKNERQVVLKSQHE-AVKESHQRYQGVNLYVKNL 370
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DSI+++ L+ +F FGT++S + D +G+SRG GFV+F + +EA+KA+TEM+ K+V
Sbjct: 371 ADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRG 430
Query: 390 KPLYVALAQRKEERRARLQAQF-SQMRPPV 418
KPLYV L +RKE+R RLQ + PPV
Sbjct: 431 KPLYVGLHERKEQRALRLQQRIRGGAVPPV 460
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 132/271 (48%), Gaps = 22/271 (8%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ +LD + L++ F++ + S ++ D+L + S GY +V +++ A+ A+
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D LN + + + LR D NV+VKNL ++ L F FG I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNND----GNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D +GKS +GF++F+ D A ++ LNG D+ YVGK QKK ER E
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKD 186
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
F N+YVK++ S ++D L ++F +G I+S + D G R G
Sbjct: 187 KTF-------------TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFG 231
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
FV F + A A+ ++ +V P+ V L
Sbjct: 232 FVNFENPDSAKAAVAALHNALVT--PVGVEL 260
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +L S+N+ L +F G V SV + D S S G+G+V++ + EA
Sbjct: 358 QRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESG-VSRGFGFVSFLSPDEA 416
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E++ + GKP+ + R
Sbjct: 417 TKAITEMHLKLVRGKPLYVGLHER 440
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/256 (53%), Positives = 187/256 (73%), Gaps = 3/256 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RV RD+ TRRSLGY VN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++R+SG GN+FIKNL+K+IDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
+D G S+G+GFV F+ EE+A+ AI+K+NGMLLND++VFVG F ++ERE+ F
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN + ++ L +FG FG I S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKA 294
+NGK+ + K YVG+A
Sbjct: 251 MNGKELNGKHIYVGRA 266
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 16/270 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS+ G ILS +V D + + S GY V F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K V + +R+ + ++ NV++KNL++T L F FG I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D +G SK GFV+F+ + A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG-- 184
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
T K E N+Y+KN D + D+ L LF FG I S KVM D G S+G GFV
Sbjct: 185 -------TGTK-EFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFV 236
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALA 397
+F E+A KA+ EMNGK + K +YV A
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 99/189 (52%), Gaps = 18/189 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + VNF+ P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+ + N+++KNL+ +I + L
Sbjct: 72 MNFDVIKGKPVRIMWSQR------------DPSLRRSGVG----NVFIKNLNKTIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 399 RKEERRARL 407
++ER A L
Sbjct: 175 SQKEREAEL 183
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + ++D L LF + GQ++SV+V D +S G+G+V++ +A +A+D
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 100 ELNFTPLNGKPIRI 113
E+N LNGK I +
Sbjct: 250 EMNGKELNGKHIYV 263
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 133/231 (57%), Positives = 173/231 (74%), Gaps = 3/231 (1%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD +NF + GKP+RIM+
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175
S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F
Sbjct: 61 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 119
Query: 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTED 233
+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E ++
Sbjct: 120 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 179
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+ +NGK+
Sbjct: 180 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 230
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 139/243 (57%), Gaps = 16/243 (6%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
L++ FS G ILS +V D + + S GY +V F A+ A+D +N ++ K V +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI-- 58
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+R+ + K+ N+++KNL ++ L F FG I S V+ D +G SK +G
Sbjct: 59 --MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG 115
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FV+F+ + A R++E +NG +D++ +VG+ + + ERE EL + + E
Sbjct: 116 FVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK----------EFT 165
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+Y+KN + + D++LK+LF +FG S KVM D +G S+G GFV+F E+A KA+ EM
Sbjct: 166 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 225
Query: 383 NGK 385
NGK
Sbjct: 226 NGK 228
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 74 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 131
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 132 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 191
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
LS KV TD G+S+G+GFV F+ E A+ A+D++NG L
Sbjct: 192 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 230
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 18/173 (10%)
Query: 239 FGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F G I S V RD +S + +VNF P DA R+++ +N K + +Q+
Sbjct: 5 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR- 63
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
+ SL+++ N+++KNLD SI + L + FS FG I SCKV+ D
Sbjct: 64 -----------DPSLRKSGVG----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 108
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410
NG S+G GFV F T E A +A+ +MNG ++ + ++V + ++ER A L A+
Sbjct: 109 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 160
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 161 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 217
Query: 94 ATRALDELN 102
A +A+DE+N
Sbjct: 218 AQKAVDEMN 226
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 130/175 (74%), Positives = 153/175 (87%), Gaps = 5/175 (2%)
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V+ LNGKKFDDKEWYVG+AQKK REMELK KFE++L+E ADK++ NLY+KNLDDS+
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSV 60
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DDKL+ELF+E+GTITSCKVMRD NG+SRGSGFVAF +AE+AS+AL EMN KMV SKPLY
Sbjct: 61 DDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 120
Query: 394 VALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP 443
VALAQRKE+R+ARLQAQFSQ+R P VGPRMPM+PP PG+GQQLFYGQ PP
Sbjct: 121 VALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPP 175
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERE------------STADKTRFNNVYVKNLSETTT 231
A+ +LNG +DK+ +VG +K RE ADK + N+Y+KNL ++
Sbjct: 2 AVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVD 61
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+D L+++F E+G ITS VMRD++G S+ GFV F +DA+R++ +N K K YV
Sbjct: 62 DDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYV 121
Query: 292 GKAQKKYEREMELKGKFEQ 310
AQ+K +R+ L+ +F Q
Sbjct: 122 ALAQRKEDRKARLQAQFSQ 140
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD S+D+ L + F+ +G I SCKV DS G SRG GFV F + E A A+ ++
Sbjct: 50 NLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEM 109
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
N ++ K ++V RK++R++
Sbjct: 110 NSKMVGSKPLYVALAQRKEDRKA 132
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ +T+LY+ +LD SV+D +L +LF + G + S +V RD S S G G+V + +A +
Sbjct: 43 ADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRD-SNGVSRGSGFVAFKSAED 101
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A+RAL E+N + KP+ + + R
Sbjct: 102 ASRALAEMNSKMVGSKPLYVALAQR 126
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 139/257 (54%), Positives = 186/257 (72%), Gaps = 6/257 (2%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
++ LN+ L GKP+RIM+S RDP+ R SG GN+F+KNLD+SIDNK L D FS FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVA D+ G S+GYGFVQF ++ S +A + NG L+ ++ + V PF+ + + DK+R
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ----WDKSR 116
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL ET T+ DLK++FGEFG ITS VM+D +GKS+ FGFVNF+ + A ++
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-QSLKETADKFEGLNLYVKNLDDSISD 335
E +NG D+KE +VG+AQ+K R +LK KFE + + +G+NLYVKNLDDS+ +
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 336 DKLKELFSEFGTITSCK 352
KL+ELFSEFGTITSCK
Sbjct: 237 TKLEELFSEFGTITSCK 253
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 19/224 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ QL D+F+ G+V+S +V RD S S GYG+V + + A +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTACNF 90
Query: 101 LNFTPLNGKPIRIM-YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N T + + I + + R + N+++KNL ++ + L F FG I S V
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRF 218
D G+SR +GFV F+ E+A +AI+K+NG+++++K++ VG RK R T D K +F
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR--TEDLKAKF 208
Query: 219 N--------------NVYVKNLSETTTEDDLKKIFGEFGIITST 248
N+YVKNL ++ L+++F EFG ITS
Sbjct: 209 ELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 252
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 100/192 (52%), Gaps = 15/192 (7%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NV+VKNL E+ L +F FG + S V RDA G SK +GFV F +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG ++ +V + G++++S T N+YVKNL ++ +D LK
Sbjct: 92 NGTLIRNQHIHVCPFVSR--------GQWDKSRVFT-------NVYVKNLVETATDADLK 136
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
LF EFG ITS VM+D G SR GFV F AE A A+ +MNG +V K L+V AQR
Sbjct: 137 RLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 400 KEERRARLQAQF 411
K R L+A+F
Sbjct: 197 KTNRTEDLKAKF 208
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 18/143 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V T++YV +L + D+ L LF + G++ S V +D +S +G+VN+ A A A
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTA 175
Query: 98 LDELNFTPLNGKPIRIMYSYR--------------DPTIR--KSGAG-NIFIKNLDKSID 140
++++N ++ K + + + R + IR K+ G N+++KNLD S+D
Sbjct: 176 IEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVD 235
Query: 141 NKALHDTFSTFGNILSCKVATDS 163
N L + FS FG I SCK A +S
Sbjct: 236 NTKLEELFSEFGTITSCKYACNS 258
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 233/381 (61%), Gaps = 38/381 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ + S+ VCRD +T RSLGY YVN+ H+A RA
Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERA 243
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN+T ++GKP RIM+SYRDPT RK+ GNIF+KNL+K +DN L+DTFS+FGNILSC
Sbjct: 244 LDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSC 303
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV + G S+GYG+V F+ +SA+ AI+K+NG L+ K + V F+ K ER +K
Sbjct: 304 KVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENK-- 360
Query: 218 FNNVYVKNLSETTTEDDLKK-IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA---- 272
V+ +N E+ T + L++ + FG I S + DA+GKSK G V F + +DA
Sbjct: 361 ---VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Query: 273 ----ARSVEALNGK----------KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK 318
A + ++G + + K + + + K ER F + K+T D
Sbjct: 418 TESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER-------FTEYRKKTTD- 469
Query: 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378
L+L++ N+D+SI D +KE F++ GTI K+++D N ++G GF++FS +EA KA
Sbjct: 470 ---LSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKA 526
Query: 379 LTEMNGKMVVSKPLYVALAQR 399
L +NG SK + V+ + +
Sbjct: 527 LDSLNGFTFGSKQIQVSFSNK 547
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 20/190 (10%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFG--IITSTAVMRDADG-KSKCFGFVNFDDPDDAA 273
+ ++YV +L+ E L ++F + G I S V RD++ +S + +VNF + DA
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+++ LN K + + + T K N++VKNL+ +
Sbjct: 242 RALDTLNYTLVHGKPCRIMWSYRD----------------PTKRKTNVGNIFVKNLEKGV 285
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+ L + FS FG I SCKV + GIS+G G+V F T + A KA+ ++NG +++ KP+
Sbjct: 286 DNAMLYDTFSSFGNILSCKVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPIN 344
Query: 394 VALAQRKEER 403
V K ER
Sbjct: 345 VERFVSKVER 354
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SL++ ++D S++ + + F + G ++ +++ +D + R G+G+++++ EA +ALD
Sbjct: 471 SLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNK-GFGFISFSEIQEAQKALDS 529
Query: 101 LNFTPLNGKPIRIMYSYRD 119
LN K I++ +S +D
Sbjct: 530 LNGFTFGSKQIQVSFSNKD 548
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/433 (37%), Positives = 243/433 (56%), Gaps = 51/433 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ V S+ VCRD T RSLGY YVN+ + +A RA
Sbjct: 138 TSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERA 197
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN++ + G+P RIM+S RDPT RKS GNIF+KNLDK +DN L DTFS FGNILSC
Sbjct: 198 LDTLNYSQIMGRPCRIMWSLRDPTKRKSNVGNIFVKNLDKQVDNAMLFDTFSKFGNILSC 257
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ + G S+GYG+V F+ +ES+ AI +NG +L K + V F+ K ER ++ +
Sbjct: 258 KIEYEK-GVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEKNEHK 316
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+++KN+ E T + L+ FG I S + D +GKSK GFV F +DA R ++
Sbjct: 317 ---LFIKNIDELATVEQLQAELSRFGEIESCIIRLDNNGKSKGLGFVEFKSVEDAQRLMD 373
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE----------------- 320
+ K + + + K ER +E + +Q +
Sbjct: 374 NPEPIQILSKPITIDRIKNKMERNIEHRQIKQQQANGNPNNNNNVVNNSTAPTVAATTTT 433
Query: 321 ------------------------GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
L L++ N+D+SI + ++E F++ GTI K++++
Sbjct: 434 TTTTVDSNGNPTNSSNNNNSVAPTNLTLFIHNIDESIDKEVIREEFAKHGTILGIKIVQE 493
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA-RLQAQFSQ-- 413
NG +RG GF+++ST EEA+ A+ +MNG ++ SKPL V+ + RK ++R +LQ+ S
Sbjct: 494 -NGKNRGFGFLSYSTQEEANIAIEKMNGFILGSKPLSVSFSNRKYKKRMQQLQSNGSNDP 552
Query: 414 MRPPVGPRMPMYP 426
+P P +P+ P
Sbjct: 553 SQPQPQPHIPLQP 565
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/261 (52%), Positives = 186/261 (71%), Gaps = 6/261 (2%)
Query: 157 CKVA--TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-- 212
C+VA D G SRG+GFV F+ +E+A AI +NGMLLND++VFVG F +QERE+
Sbjct: 111 CRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELG 169
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
A F N+YVKN E + L+++F EFG S VM D +G S+ FGFVNF+ ++A
Sbjct: 170 ARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEA 229
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
++V ++NGK + YVG+AQK+ ER+ ELK +FEQ +E ++++G+NLYVKNLDD
Sbjct: 230 QKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDV 289
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
I D+KL++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPL
Sbjct: 290 IDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 348
Query: 393 YVALAQRKEERRARLQAQFSQ 413
YVALAQRKEER+A L Q+ Q
Sbjct: 349 YVALAQRKEERKAILTNQYMQ 369
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 143/262 (54%), Gaps = 26/262 (9%)
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-- 128
VC + +R G+G+V++ A +A+ +N LN + + + + ++ R++ G
Sbjct: 116 VCDENGSR---GFGFVHFETQEAANQAISTMNGMLLNDRKVFVGH-FKSRQEREAELGAR 171
Query: 129 -----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
NI++KN ++ +D++ L + FS FG LS KV D G SRG+GFV F+ E A+
Sbjct: 172 ALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQK 231
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN-------------NVYVKNLSETT 230
A++ +NG L + ++VG ++ ER+ K RF N+YVKNL +
Sbjct: 232 AVNSMNGKALGGRVLYVGRAQKRTERQGEL-KRRFEQMKQERVNRYQGVNLYVKNLDDVI 290
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
++ L+K F +G+ITS VM + G SK FGFV F P++A ++V +NG+ K Y
Sbjct: 291 DDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 349
Query: 291 VGKAQKKYEREMELKGKFEQSL 312
V AQ+K ER+ L ++ Q +
Sbjct: 350 VALAQRKEERKAILTNQYMQRI 371
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 29/213 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV + + V+D L +LF++ G+ +SV+V D S G+G+VN+ E
Sbjct: 170 ARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVD-ENGHSRGFGFVNFEKHEE 228
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A++ +N L G R++Y R + + N+++KN
Sbjct: 229 AQKAVNSMNGKALGG---RVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKN 285
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD ID++ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG +++
Sbjct: 286 LDDVIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVS 344
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK+ER K N Y++ +S
Sbjct: 345 TKPLYVALAQRKEER-----KAILTNQYMQRIS 372
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 212/328 (64%), Gaps = 10/328 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
G + K +++ + K +H L VA D G S+GYGFV F+ ++SA +I+K
Sbjct: 404 GGVQTKCKEQNSNIKYIHCYAHCLNLALVDSVAQDETGNSKGYGFVHFETKQSATQSIEK 463
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLLN K+VFVG F+ + +RE + + NVY+KN+ E E +L ++F ++G I
Sbjct: 464 VNGMLLNGKKVFVGRFVGRNDREKELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTI 523
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMEL 304
TS VM DG S+ FGFV F+DP +A ++V L+GKK + K +YV +AQKK ER+ EL
Sbjct: 524 TSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQEL 583
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
K KFEQ E ++++G+NLYVKNLDD+I D++L+ FS FGTI S KVM D +G S+G
Sbjct: 584 KRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRSKGF 642
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPM 424
GFV FS+ EEA+KA+T+MNG++V +KPLYV LAQRK++R+A L +Q+SQ + RM
Sbjct: 643 GFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQRNTNM--RMQS 700
Query: 425 YPPV-APGLGQQLFYGQGPPIIPPQVIY 451
P+ PG F P I PQ Y
Sbjct: 701 IGPIYQPGASNGYFV---PTIPQPQYFY 725
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 142/253 (56%), Gaps = 20/253 (7%)
Query: 77 TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNI 130
T S GYG+V++ AT++++++N LNGK + + + R+ ++ G N+
Sbjct: 440 TGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAKLYTNV 499
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
+IKN+D++++ K L + F +G I SCKV G SRG+GFV F++ + A+ A+ +L+G
Sbjct: 500 YIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHG 559
Query: 191 MLLND-KQVFVGPFLRKQERESTADKT-------RFN-----NVYVKNLSETTTEDDLKK 237
+ K +V +K ER+ + R N N+YVKNL +T ++ L++
Sbjct: 560 KKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRR 619
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S VM D DG+SK FGFV F P++A ++V +NG+ K YV AQ+K
Sbjct: 620 EFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRK 678
Query: 298 YEREMELKGKFEQ 310
+R+ L ++ Q
Sbjct: 679 KDRKAHLDSQYSQ 691
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 21/193 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRAL 98
T++Y+ ++D +VN+ +L+++F + G + S +V +D + R G+G+V + EA +A+
Sbjct: 497 TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSR--GFGFVAFEDPKEAEKAV 554
Query: 99 DELN-----------------FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
EL+ T + R Y+ I + N+++KNLD +ID+
Sbjct: 555 TELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDD 614
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+ L FS FG I S KV D G+S+G+GFV F + E A A+ +NG ++ K ++V
Sbjct: 615 ERLRREFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVT 673
Query: 202 PFLRKQERESTAD 214
RK++R++ D
Sbjct: 674 LAQRKKDRKAHLD 686
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD +++D +L F+ G + S +V D RS G+G+V +++ EAT
Sbjct: 597 RYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDG--RSKGFGFVYFSSPEEAT 654
Query: 96 RALDELNFTPLNGKPIRI---------------MYSYRDPTIRKSGAGNIF 131
+A+ ++N + KP+ + YS R+ +R G I+
Sbjct: 655 KAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQRNTNMRMQSIGPIY 705
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 159/422 (37%), Positives = 236/422 (55%), Gaps = 49/422 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
TSLYVGDL VN+ L +LF+++G+ V S+ VCRD +T RSLGY YVN+ + +A RA
Sbjct: 130 TSLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAERA 189
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN++ + G+P RIM+S+RDPT RKS GNIF+KNL+K++DN L DTFST+GNILSC
Sbjct: 190 LDTLNYSLILGRPCRIMWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTFSTYGNILSC 249
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ + G S+GYG+V F+N+ES++ AI K+NG +L K + V PF+ K ER +K
Sbjct: 250 KIEYEK-GISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEPFVSKVER--FKEKKN 306
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
N +++KN+ E T + L++ FG I S + D GK K FV F +DA +E
Sbjct: 307 ENKLFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPKGLAFVEFKTSEDAQALLE 366
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGK-------------------------FEQSL 312
+ K+ + + K ER +E K +Q+
Sbjct: 367 STEAITILSKQITFDRIKNKVERSIEKNQKLINELNNNNNNHNNNNINHHINSSSLQQNG 426
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
+ + + L L++ N+D + + ++E F++ G I K+ SRG F+ +ST
Sbjct: 427 STSQQQQQNLTLFINNIDMEVDKEIIREEFAKHGNILGIKIK------SRGFAFLTYSTQ 480
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRA---RLQAQFSQMRPPVGPRMPMYPPVA 429
EEA+ A+ +MNG + +K L V+L+ ++E+R LQ GP MY P
Sbjct: 481 EEAAVAIEKMNGYVFGTKALVVSLSNSRKEKRIPSDSLQ----------GPNPYMYMPYV 530
Query: 430 PG 431
G
Sbjct: 531 RG 532
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 136/259 (52%), Positives = 187/259 (72%), Gaps = 4/259 (1%)
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D S+GYGFV F+ EESA+ AI+K+NGMLL K+V+VG F + R +T
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETAR 60
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
RF NVY+KN ++ ++ L+K+F +FG ITS AVM DADGKSK FGFV F++P+DA ++V
Sbjct: 61 RFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAV 120
Query: 277 EALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++ + +++ YV +AQKK ER ELK ++EQ E +++G+NLYVKNLDD+++
Sbjct: 121 TEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVN 180
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
DD LK+ F +G ITS KVM D NG S+G GFV F +EA+KA+TEMNGKM+ +KPLYV
Sbjct: 181 DDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 240
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKE+R+A+L +Q+ Q
Sbjct: 241 ALAQRKEDRKAQLASQYMQ 259
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 143/254 (56%), Gaps = 22/254 (8%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIK 133
S GYG+V++ A +A++++N L GK + + + R +R+ G N++IK
Sbjct: 9 SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIK 68
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
N +D +AL FS FG I S V D+ G+S+G+GFV F+N E A+ A+ +++ L
Sbjct: 69 NFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYEL 128
Query: 194 --NDKQVFVGPFLRKQERESTADKTRFN-------------NVYVKNLSETTTEDDLKKI 238
+++++V +K ER S K R+ N+YVKNL +T +D LK+
Sbjct: 129 PGTERKLYVCRAQKKNER-SAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQN 187
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F +G ITS VM D +G+SK FGFV F+ PD+A ++V +NGK K YV AQ+K
Sbjct: 188 FEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKE 247
Query: 299 EREMELKGKFEQSL 312
+R+ +L ++ Q L
Sbjct: 248 DRKAQLASQYMQRL 261
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 12/168 (7%)
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V D + SK +GFV+F+ + A +++E +NG + K+ YVGK Q + R E+
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMG---- 56
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
ETA +F N+Y+KN D + + L++LFS+FG ITS VM D +G S+G GFVAF
Sbjct: 57 ----ETARRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAF 110
Query: 370 STAEEASKALTEMNGKMV--VSKPLYVALAQRKEERRARLQAQFSQMR 415
E+A KA+TEM+ + + LYV AQ+K ER A L+ ++ Q +
Sbjct: 111 ENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 158
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 28/213 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR+F T++Y+ + ++ L LF++ G++ S V D + +S G+G+V + +
Sbjct: 59 ARRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVD-ADGKSKGFGFVAFENPED 115
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG-------------------NIFIKN 134
A +A+ E++ L G R +Y R + A N+++KN
Sbjct: 116 AEKAVTEMHEYELPGTE-RKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKN 174
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD ++++ L F +G I S KV D G+S+G+GFV F+ + A A+ ++NG ++
Sbjct: 175 LDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMC 234
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
K ++V RK++R K + + Y++ L+
Sbjct: 235 TKPLYVALAQRKEDR-----KAQLASQYMQRLA 262
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/330 (43%), Positives = 192/330 (58%), Gaps = 60/330 (18%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL + V ++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GNIFIKNLD SIDNKAL+DTFSTFGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV---------------------- 198
D G SRG+GFV F+ E+A AI +NGMLLND++V
Sbjct: 132 CDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGRVGSGKRPPSGRS 190
Query: 199 ------------------------FVGPFLRKQERESTADKT-------RFN-----NVY 222
+VG ++ ER+S + R N N+Y
Sbjct: 191 RPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQERVNRYQGVNLY 250
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
VKNL + ++ L+K F +G ITS VM ++ G SK FGFV F P++A ++V +NG+
Sbjct: 251 VKNLDDCIDDEKLRKEFSPYGTITSAKVMTES-GHSKGFGFVCFSSPEEATKAVTEMNGR 309
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
K YV AQ+K ER+ L ++ L
Sbjct: 310 IVSTKPLYVALAQRKEERKAILTNQYMHRL 339
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 208/387 (53%), Gaps = 71/387 (18%)
Query: 125 SGAG----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEE 179
+GAG ++++ +L + L++ FS G+I+S +V D + S GY ++ F
Sbjct: 4 TGAGYPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPA 63
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ A+D +N ++ + + + +R+ K+ N+++KNL ++ L F
Sbjct: 64 DAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTF 119
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA--------------------------- 272
FG I S V+ D G S+ FGFV+F+ + A
Sbjct: 120 STFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGR 178
Query: 273 -------------------ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
A++V ++NGK+ + + YVG+AQK+ ER+ ELK KFEQ +
Sbjct: 179 VGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQ 238
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373
E ++++G+NLYVKNLDD I D+KL++ FS +GTITS KVM + +G S+G GFV FS+ E
Sbjct: 239 ERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE-SGHSKGFGFVCFSSPE 297
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF----SQMRPPVGPRMPMY-PPV 428
EA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ S +R V P M + P
Sbjct: 298 EATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMHRLSTIRTLVAPIMGSFQQPT 357
Query: 429 A---PGLGQ----QLFYGQGP--PIIP 446
P L Q FYG P P+ P
Sbjct: 358 GYFLPALPQPQTRSTFYGPSPVDPVRP 384
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + + S G+G+V +++ EAT
Sbjct: 243 RYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE--SGHSKGFGFVCFSSPEEAT 300
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N ++ KP+ + + R
Sbjct: 301 KAVTEMNGRIVSTKPLYVALAQR 323
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 130/269 (48%), Positives = 189/269 (70%), Gaps = 12/269 (4%)
Query: 14 VAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
+ P+P G+ +QF S LY GDL VN++ LY++FN +G V S+RVCR
Sbjct: 32 TSGDPAPTVGGVPT-------QQFAS--LYAGDLAPDVNEAVLYEVFNGIGPVASIRVCR 82
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D TR+SLGY Y+N++ +A RALD LN++P+NG+P R+M+S+RDP +R+SGAGN+++K
Sbjct: 83 DSVTRKSLGYAYINFHNVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVK 142
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD++IDNKAL+DTFS FGNILSCKVA G+SRG+GFV F+++ESA++AI KLNGM +
Sbjct: 143 NLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQI 202
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
+K V+V F + +R + K F NVY+K++ + TE+ +++ FG FG ITS A+ D
Sbjct: 203 GEKTVYVAQFKKTADRSDGSPKN-FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTD 261
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGK 282
G+ F FVNF + + A +VE ++G+
Sbjct: 262 PKGRR--FAFVNFAEFEQARAAVEDMDGE 288
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 30/263 (11%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDK 187
+++ +L ++ L++ F+ G + S +V DS+ +S GY ++ F N A+ A+D
Sbjct: 50 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 109
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN +N + L R+ ++ NVYVKNL L F FG I S
Sbjct: 110 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 165
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V DGKS+ FGFV+F+ + A ++ LNG + +K YV +
Sbjct: 166 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQ-------------- 211
Query: 308 FEQSLKETADKFEG-----LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
K+TAD+ +G N+Y+K++ S +++K++E F FG ITS + DP G R
Sbjct: 212 ----FKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--R 265
Query: 363 GSGFVAFSTAEEASKALTEMNGK 385
FV F+ E+A A+ +M+G+
Sbjct: 266 RFAFVNFAEFEQARAAVEDMDGE 288
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 19/189 (10%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARS 275
+F ++Y +L+ E L ++F G + S V RD+ KS + ++NF + DA R+
Sbjct: 47 QFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 106
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSIS 334
++ LN + + + S ++ A + G N+YVKNLD +I
Sbjct: 107 LDTLNYSPINGRPC-----------------RLMWSHRDPALRRSGAGNVYVKNLDRNID 149
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L + FS FG I SCKV P+G SRG GFV F + E A A+ ++NG + K +YV
Sbjct: 150 NKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYV 209
Query: 395 ALAQRKEER 403
A ++ +R
Sbjct: 210 AQFKKTADR 218
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 160/386 (41%), Positives = 217/386 (56%), Gaps = 41/386 (10%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+ + SLYVGDL V + L++LF+ +G VVSVRVCRD+ TRRSLGY YVN+ +A
Sbjct: 172 ELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAE 231
Query: 96 RALDELNF--TPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
RA+D L F PL KPIRIM+ DP+ R++ GNIFIKNLDKSIDNKAL+DTFSTFG
Sbjct: 232 RAIDVLQFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFSTFG 291
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+LSCK+ATD G S GY FV + + AK I K+NGMLLN ++V+VG F ++ERE+T
Sbjct: 292 KVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGEFRPRREREAT 351
Query: 213 AD-KTRFNNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
+ T+F NVYVKNL E+ T +++ K+F +G ITS + + + + P
Sbjct: 352 GELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGNITSIFIPTETVQEQQPHHEDEHRAPS 411
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET-ADKFEGLNLYVKNL 329
+ A S E +G Q +K AD+ +L
Sbjct: 412 EEASS-------------------------EAGRQGGSSQEVKSAGADQSNA----APDL 442
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
+ S +D K + + +V RG FV F T E+A+ A+ +NG +
Sbjct: 443 ETSERNDGAKAPENRAHAQSVVRVR------PRGFAFVNFETPEQAAAAVEALNGMELNG 496
Query: 390 KPLYVALAQRKEERRARLQAQFSQMR 415
K LYV AQ+K ER A L+AQ Q+R
Sbjct: 497 KTLYVGRAQKKAEREAMLRAQMEQLR 522
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 217/391 (55%), Gaps = 53/391 (13%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +LD S+++ LYD F+ G+V+S ++ D SLGY +V+Y A+ A + ++
Sbjct: 269 IFIKNLDKSIDNKALYDTFSTFGKVLSCKLATD-DKGNSLGYAFVHYQDANVAKYVISKM 327
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSI-DNKALHDTFSTFGN 153
N LNG+ + + +R P + G N+++KNLD+S+ + + F+ +GN
Sbjct: 328 NGMLLNGQKVYV-GEFR-PRREREATGELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGN 385
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
I S + T+++ + + + ++E A S +E S A
Sbjct: 386 ITSIFIPTETVQEQQPH----HEDEHRAPS-----------------------EEASSEA 418
Query: 214 DKTRFNNVYVKNLS----------ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+ ++ VK+ ET+ +D K S +R + F F
Sbjct: 419 GRQGGSSQEVKSAGADQSNAAPDLETSERNDGAKAPENRAHAQSVVRVRP-----RGFAF 473
Query: 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN 323
VNF+ P+ AA +VEALNG + + K YVG+AQKK ERE L+ + EQ + K + +N
Sbjct: 474 VNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQKLQDVN 533
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L+VKNL D + +++L+E FS FGTITS ++MRD G+S+G GFVAFS +EA KA+TEMN
Sbjct: 534 LFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMN 593
Query: 384 GKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
++V KP+YVALAQRK++RRA+++AQ + M
Sbjct: 594 QRIVGQKPIYVALAQRKDQRRAQIEAQRAAM 624
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 33/246 (13%)
Query: 120 PTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFV 173
P SG G ++++ +L + + L + FS+ G ++S +V D + + S GY +V
Sbjct: 163 PAASASGTGELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYV 222
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPF-----LRKQERESTADKTRF--NNVYVKNL 226
F N E A+ AID L Q + GP +R + S + R N+++KNL
Sbjct: 223 NFQNPEDAERAIDVL--------QFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNL 274
Query: 227 SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286
++ L F FG + S + D G S + FV++ D + A + +NG +
Sbjct: 275 DKSIDNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNG 334
Query: 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI-SDDKLKELFSEF 345
++ YVG+ + + ERE + E + KF N+YVKNLD+S+ + +++ +LF+ +
Sbjct: 335 QKVYVGEFRPRRERE---------ATGELSTKF--TNVYVKNLDESLCTTEEVTKLFAPY 383
Query: 346 GTITSC 351
G ITS
Sbjct: 384 GNITSI 389
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 182/256 (71%), Gaps = 1/256 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN++ L+D F++ G V+S+ VCRDL T+RSLGY Y+ + +A RA D
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N+ P+ G+P IM+S RDP++R+S AG+IFIKNL++SID+KAL+DTFS FGNILSCKVA
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
TD GQS+G GFV FD +E+A AI+K+NG LLN+++V VG F+ +++R T + N
Sbjct: 132 TDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHTGFNQHYTN 191
Query: 221 -VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
V+VKN E T++ L F +FG I + VM+D +G SK FGFV+F+ + A+ +V+A+
Sbjct: 192 VVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQAV 251
Query: 280 NGKKFDDKEWYVGKAQ 295
+ + ++ Y +A
Sbjct: 252 HSSIVNGRQVYCSRAH 267
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 138/271 (50%), Gaps = 16/271 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L ++ L D FS G +LS V D + + S GY ++ F A+ A D
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + ++ +R+ + ++R ++++KNL + L F FG I S
Sbjct: 72 MNYEPIKGQPCYI----MWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D +G+SK GFV+FD+ + A ++E +NG+ ++++ +VGK + +R
Sbjct: 128 CKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRS---HTG 184
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
F Q ++VKN + +D+ L F +FG+I + VM+D G+S+ GFV
Sbjct: 185 FNQHYTNV--------VFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFV 236
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+F + E AS A+ ++ +V + +Y + A
Sbjct: 237 SFESHEAASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 18/197 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVEA 278
++YV +L E DL F + G + S V RD K S + ++ F P DA R+ +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + Y+ +Q+ + SL+ + ++++KNL+ SI L
Sbjct: 72 MNYEPIKGQPCYIMWSQR------------DPSLRRS----RAGHIFIKNLERSIDHKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA-LA 397
+ FS FG I SCKV D NG S+G GFV F E A A+ ++NG+++ ++ ++V
Sbjct: 116 YDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFI 175
Query: 398 QRKEERRARLQAQFSQM 414
RK+ ++ +
Sbjct: 176 PRKDRSHTGFNQHYTNV 192
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 209/366 (57%), Gaps = 54/366 (14%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVG+L ++++ L + F G V SV+VCRD T +SLGY ++N+ + + A +
Sbjct: 39 TSLYVGELAPHIDEAMLKEHF---GNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFE 95
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN + ++G R+M S R+ T R SGAGNI +KNL ++DNK+L+DTFS +GN++SC+V
Sbjct: 96 NLNHSKIDGTTYRLMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRV 155
Query: 160 ATDSLGQS-RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-----A 213
G S +GYGFV +D +A+ AI +NG +L K+V + K E+ES
Sbjct: 156 FNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQ 215
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
RF NVYVKNLS TEDDL ++F G ++S V RD K K FGFVNF+ P+DA
Sbjct: 216 QHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFGFVNFELPEDAE 275
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
R+V L+ K F + +
Sbjct: 276 RAVNELHDKDF--------------------------------------------FAEDV 291
Query: 334 SDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+D+ L F +GTITS K+M+D + G +G GFV FS+++EA++A+ EMNG+ + SKP+
Sbjct: 292 TDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEANRAVAEMNGRFISSKPI 351
Query: 393 YVALAQ 398
YVALAQ
Sbjct: 352 YVALAQ 357
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV L+ E LK+ FG + S V RD+ +S + +NF P D + + E
Sbjct: 40 SLYVGELAPHIDEAMLKE---HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFEN 96
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
LN K D + + S +ET + G N+ +KNL ++ +
Sbjct: 97 LNHSKIDGTTY-----------------RLMISERETTKRVSGAGNIILKNLHPNVDNKS 139
Query: 338 LKELFSEFGTITSCKVMRDPNGIS-RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L + FS +G + SC+V G S +G GFV + T A +A++ +NGKM+ K ++ +
Sbjct: 140 LYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASH 199
Query: 397 AQRKEERRARL 407
K E+ + L
Sbjct: 200 QVLKNEKESLL 210
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 171/237 (72%), Gaps = 10/237 (4%)
Query: 14 VAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
+ P+P G+ +QF S LY GDL VN++ LY++FN +G V S+RVCR
Sbjct: 31 TSGDPAPTVGGVP-------TQQFAS--LYAGDLAPDVNEAVLYEVFNGIGPVASIRVCR 81
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D TR+SLGY Y+N++ +A RALD LN++P+NG+P R+M+S+RDP +R+SGAGN+++K
Sbjct: 82 DSVTRKSLGYAYINFHNVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVK 141
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
NLD++IDNKAL+DTFS FGNILSCKVA G+SRG+GFV F+++ESA++AI KLNGM +
Sbjct: 142 NLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQI 201
Query: 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+K V+V F + +R + K F NVY+K++ + TE+ +++ FG FG ITS A+
Sbjct: 202 GEKTVYVAQFKKTADRSDGSPKN-FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAM 257
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 28/228 (12%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAIDK 187
+++ +L ++ L++ F+ G + S +V DS+ +S GY ++ F N A+ A+D
Sbjct: 49 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN +N + L R+ ++ NVYVKNL L F FG I S
Sbjct: 109 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 164
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V DGKS+ FGFV+F+ + A ++ LNG + +K YV +
Sbjct: 165 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQ-------------- 210
Query: 308 FEQSLKETADKFEG-----LNLYVKNLDDSISDDKLKELFSEFGTITS 350
K+TAD+ +G N+Y+K++ S +++K++E F FG ITS
Sbjct: 211 ----FKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 19/189 (10%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARS 275
+F ++Y +L+ E L ++F G + S V RD+ KS + ++NF + DA R+
Sbjct: 46 QFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSIS 334
++ LN + + + S ++ A + G N+YVKNLD +I
Sbjct: 106 LDTLNYSPINGR-----------------PCRLMWSHRDPALRRSGAGNVYVKNLDRNID 148
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L + FS FG I SCKV P+G SRG GFV F + E A A+ ++NG + K +YV
Sbjct: 149 NKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYV 208
Query: 395 ALAQRKEER 403
A ++ +R
Sbjct: 209 AQFKKTADR 217
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++YV +LD ++++ LYD F+ G ++S +V +S G+G+V++ + A
Sbjct: 131 RRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESA 189
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA----GNIFIKNLDKSIDNKALHDTFST 150
A+ +LN + K + + ++ R G+ N++IK++ S + + + F
Sbjct: 190 EAAIAKLNGMQIGEKTVYVA-QFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGA 248
Query: 151 FGNILSCKVAT 161
FG I S + T
Sbjct: 249 FGEITSFAMQT 259
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 177/495 (35%), Positives = 251/495 (50%), Gaps = 90/495 (18%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + SLYVGDL VN+++L++LF+ +G V+SVRVCRD TR SLGYGYVN+N A +A
Sbjct: 75 QGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAE 134
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+ +LNF L+G+ IRIM RDP R+SG GNIFI L + L DTF FG IL
Sbjct: 135 AAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGKIL 194
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFL-RKQERESTA 213
SCK D G+ RG+GFV F++ + A+ AI + NG D+++ V PF RKQ +
Sbjct: 195 SCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQE 254
Query: 214 DKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV----MRDADGKSKCFGFVNFDD 268
++T+ F NVYVK+L E++L K+F +G ITS A+ ++D + + +GFVNF D
Sbjct: 255 ERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNFAD 311
Query: 269 PDDAARSVEA----------------LNGKKFDD----KEWYVGKAQKKYEREM---ELK 305
+ A + VE GKK +D E G +++ ++ +L
Sbjct: 312 TEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLS 371
Query: 306 G--KFEQSLKETADK-FEGLNLYVKNLDDSISDDKL------------------------ 338
G F++ +ET DK GL ++ D IS KL
Sbjct: 372 GFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRRLQERRR 431
Query: 339 -----------------------KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
++ F E G + S KVMRD G+SR GFV F+T EEA
Sbjct: 432 ELRQRGGNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEA 491
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQ 435
A+ + N + + +P+YVA ++ER+AR + Q M MYP PG+
Sbjct: 492 ESAIAKKNRQPLQDRPIYVAFHLTRQERQAR---KQQQHPQHPQQGMYMYPQY-PGMPMG 547
Query: 436 LFYGQGPPIIPPQVI 450
F GP PQ++
Sbjct: 548 AF---GPGYYNPQMM 559
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 177/247 (71%), Gaps = 12/247 (4%)
Query: 188 LNGMLLNDKQVFVGPFLRKQER-ESTADKTR-FNNVYVKNLSETTTEDDLKKIFGEFGII 245
+NGMLLNDK+VFVG FL + ER + ++ R F NVY+KN + E L+ +F ++G++
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVV 60
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE-----WYVGKAQKKYER 300
S AVMRD DG S+ FGFV +D ++A +VEA+NG++ + YVG+AQKK ER
Sbjct: 61 KSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQER 120
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---- 356
+ EL+G++EQ +E +F+G+NLYVKNLDD+++DD+L+E F+ +GTITS K+M D
Sbjct: 121 QQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECS 180
Query: 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ-MR 415
SRG GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQR+E+R+A L AQ+ Q M
Sbjct: 181 TGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQRMT 240
Query: 416 PPVGPRM 422
+G RM
Sbjct: 241 SSMGVRM 247
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 21/205 (10%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKN D K L F +G + S V D G SRG+GFV +D+ E A++A++ +
Sbjct: 35 NVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAM 94
Query: 189 NGMLLNDKQ-----VFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTT 231
NG + ++VG +KQER+ RF N+YVKNL + T
Sbjct: 95 NGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVT 154
Query: 232 EDDLKKIFGEFGIITSTAVMRDADG----KSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
+D+L++ F +G ITS +M D + +S+ FGFV F P++A ++V +NG+ K
Sbjct: 155 DDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTK 214
Query: 288 EWYVGKAQKKYEREMELKGKFEQSL 312
YV AQ++ +R+ L ++ Q +
Sbjct: 215 PLYVALAQRREDRKAHLTAQYMQRM 239
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD--LST-RRSLGYGYVNYNAA 91
++F +LYV +LD +V D +L + F G + S ++ D ST RS G+G+V +++
Sbjct: 137 QRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSP 196
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYR 118
EAT+A+ E+N + KP+ + + R
Sbjct: 197 EEATKAVTEMNGRIVGTKPLYVALAQR 223
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 155/213 (72%), Gaps = 3/213 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +++A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
A F NVY+KN E ++ LK+ F ++G
Sbjct: 184 GAKAKEFTNVYIKNFGEDMDDERLKETFSKYGC 216
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 16/221 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I
Sbjct: 71 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ D A R++E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGA 185
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
K + E N+Y+KN + + D++LKE FS++G
Sbjct: 186 KAK----------EFTNVYIKNFGEDMDDERLKETFSKYGC 216
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGKPIRIMWSQR------------DPSLRKSGVG----NVFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV+ D NG S+G FV F T + A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 399 RKEERRARLQAQ 410
+ ER A L A+
Sbjct: 175 CRREREAELGAK 186
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 167/468 (35%), Positives = 242/468 (51%), Gaps = 87/468 (18%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL VN+++L++LF+ +G V+SVRVCRD T SLGYGYVN+N A +A A+
Sbjct: 248 TSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAMG 307
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+LNF L+G+ IRIM RDP R+S NI + L + L DTF FG ILSCK
Sbjct: 308 QLNFHDLHGRHIRIMKVERDPKKRRSDPRNIVVTGLPADTTSVHLRDTFEQFGKILSCKA 367
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFL-RKQERESTADKTR 217
D G+ RG+GFV F++ + A+ AI + NG D+++ V PF RKQ + ++T+
Sbjct: 368 VLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQEERTK 427
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV----MRDADGKSKCFGFVNFDDPDDA 272
F NVYVK+L E++L K+F +G ITS A+ ++D + + +GFVNF D + A
Sbjct: 428 NFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNFADTEAA 484
Query: 273 ARSVEA----------------LNGKKFDD----KEWYVGKAQKKYEREM---ELKG--K 307
+ VE GKK +D E G +++ ++ +L G
Sbjct: 485 QKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLSGFIL 544
Query: 308 FEQSLKETADK-FEGL--------------NLYV-------------------------- 326
F++ +ET DK GL LYV
Sbjct: 545 FKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQTKQERIRRLRRRLQERRRELRQ 604
Query: 327 -------KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
KN +++++++ L++ F E G + KVMRD G+SR GFV F+T EEA A+
Sbjct: 605 RGGNLFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAI 664
Query: 380 TEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM---RPPVGPRMPM 424
+ N + + +P+YVA ++E R + Q Q Q P PRMPM
Sbjct: 665 AKKNRQTLQDRPIYVAFHLTRQE-RCKQQPQHPQQGVYMYPQCPRMPM 711
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS---GFVAFSTAEEASK 377
G +LYV +L +++ +L LFS G++ S +V RD I+ GS G+V F+ AE+A
Sbjct: 247 GTSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRD--QITHGSLGYGYVNFNKAEDAEA 304
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERR 404
A+ ++N + + + + +R ++R
Sbjct: 305 AMGQLNFHDLHGRHIRIMKVERDPKKR 331
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 157/425 (36%), Positives = 234/425 (55%), Gaps = 29/425 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD + + +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+ L + +RI RDP+ R+SG NI +K L KS+D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEM-DGQAIVVERYQAQHRDELLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD--ADGKSKCFGFVNFDDPDDAARSVEA 278
+YVKNL T++ L+ F ++G ++S V RD A G+V F +DAAR+VE
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAARAVEE 243
Query: 279 LNGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNLD 330
LNG KE + KA + + + + + K+ NLYVK D
Sbjct: 244 LNG-----KECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYP--NLYVKGFD 296
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D+++ ++L+ELF +G S VM D G+SR GFV+ AS+A+ E+NG +S
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLS 356
Query: 390 -KPLYVALAQRKEERRARLQAQFSQMR----PPVGPRMPMYPPVAPGLGQQLFYGQGPPI 444
+PL+V A RK+ RR L+ + Q R P GP M PP+ +G Q+F P
Sbjct: 357 PRPLFVTYALRKDARRQNLEERSKQFRVRQNPMGGPGMGAMPPIG-FMGPQMFNNVNMPF 415
Query: 445 IPPQV 449
+ P+V
Sbjct: 416 MNPRV 420
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +LD +V D +L F + G+V S +V RDL +S G GYV + +
Sbjct: 180 KQF--TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHED 236
Query: 94 ATRALDELNFTPLN----GKPIRI-------------MYSYRDPTIRKSGAGNIFIKNLD 136
A RA++ELN G P+ + R+ + S N+++K D
Sbjct: 237 AARAVEELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLN 194
++ ++ L + F +G +S V D G SR +GFV ++ +A AI +LNG L+
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLS 356
Query: 195 DKQVFVGPFLRKQER 209
+ +FV LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 157/425 (36%), Positives = 234/425 (55%), Gaps = 29/425 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD + + +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+ L + +RI RDP+ R+SG NI +K L KS+D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEM-DGQAIVVERYQAQHRDELLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD--ADGKSKCFGFVNFDDPDDAARSVEA 278
+YVKNL T++ L+ F ++G ++S V RD A G+V F +DAAR+VE
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAARAVEE 243
Query: 279 LNGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNLD 330
LNG KE + KA + + + + + K+ NLYVK D
Sbjct: 244 LNG-----KECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYP--NLYVKGFD 296
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D+++ ++L+ELF +G S VM D G+SR GFV+ AS+A+ E+NG +S
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLS 356
Query: 390 -KPLYVALAQRKEERRARLQAQFSQMR----PPVGPRMPMYPPVAPGLGQQLFYGQGPPI 444
+PL+V A RK+ RR L+ + Q R P GP M PP+ +G Q+F P
Sbjct: 357 PRPLFVTYALRKDARRQNLEERSKQFRVRQNPMGGPGMGAMPPIG-FMGPQMFNNVNMPF 415
Query: 445 IPPQV 449
+ P+V
Sbjct: 416 MNPRV 420
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +LD +V D +L F + G+V S +V RDL +S G GYV + +
Sbjct: 180 KQF--TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHED 236
Query: 94 ATRALDELNFTPLN----GKPIRI-------------MYSYRDPTIRKSGAGNIFIKNLD 136
A RA++ELN G P+ + R+ + S N+++K D
Sbjct: 237 AARAVEELNGKECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLN 194
++ ++ L + F +G +S V D G SR +GFV ++ +A AI +LNG L+
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLS 356
Query: 195 DKQVFVGPFLRKQER 209
+ +FV LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 154/424 (36%), Positives = 234/424 (55%), Gaps = 27/424 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD + + +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+ L + +RI RDP+ R+SG NI +K L KS+D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEM-DGQAIVVERYQAQHRDELLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEAL 279
+YVKNL T++ L+ F ++G ++S V +S+ G+V F ++AAR+VE L
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAAQSEAGLGYVAFQKHENAARAVEEL 244
Query: 280 NGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
NG KE + KA + + + + + K+ NLYVK DD
Sbjct: 245 NG-----KECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYP--NLYVKGFDD 297
Query: 332 SISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS- 389
+++ ++L+ELF +G S VM D G+SR GFV+ AS+A+ E+NG +S
Sbjct: 298 TVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSP 357
Query: 390 KPLYVALAQRKEERRARLQAQFSQMR----PPVGPRMPMYPPVAPGLGQQLFYGQGPPII 445
+PL+V A RK+ RR L+ + Q R P GP M PP+ +G Q+F P +
Sbjct: 358 RPLFVTYALRKDARRQNLEERSKQFRVRQNPMGGPGMGAMPPIG-FMGPQMFNNVNMPFM 416
Query: 446 PPQV 449
P+V
Sbjct: 417 NPRV 420
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +LD +V D +L F + G+V S +V RDL +S G GYV +
Sbjct: 180 KQF--TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAAQSEAGLGYVAFQKHEN 236
Query: 94 ATRALDELNFTPLN----GKPIRI-------------MYSYRDPTIRKSGAGNIFIKNLD 136
A RA++ELN G P+ + R+ + S N+++K D
Sbjct: 237 AARAVEELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLN 194
++ ++ L + F +G +S V D G SR +GFV ++ +A AI +LNG L+
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLS 356
Query: 195 DKQVFVGPFLRKQER 209
+ +FV LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 193/313 (61%), Gaps = 26/313 (8%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+ RDP +R SG GNIF+KNL +D++ L F FG ILSCKV +D G+SRGYGFV
Sbjct: 1 MWQQRDPALRYSGNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQ--------VFVGPFLRKQERESTADKTRFNNVYVKN 225
F ++ +AK+AI+ +NG DK+ ++V F+R+ R + A F NVY+K
Sbjct: 61 HFKDDTAAKNAIESMNG----DKEHADAAKAALYVANFIRRNARLA-ALVANFTNVYIKQ 115
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285
L T +D ++K F +FG ITS A +D +G++ F F NF+ DDA +++EA + + +
Sbjct: 116 LLPTVNKDTIEKFFSKFGGITSAATCKDKNGRA--FAFCNFEKHDDAVKAIEAFHDQVIE 173
Query: 286 D-----KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
++ YV +AQ + ER + L+ K+ Q + G NLYV+N D S+ L
Sbjct: 174 GVTPPGEKLYVQRAQPRSERLIALRQKYMQC------QSLGNNLYVRNFDVEFSEKDLHV 227
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
LF E+GTI SC+VM D NG SRG GFV+F A++A+ AL EMNG+M+ KPL V +AQR+
Sbjct: 228 LFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRR 287
Query: 401 EERRARLQAQFSQ 413
++R L+ QF Q
Sbjct: 288 DQRFMMLRVQFQQ 300
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 151/309 (48%), Gaps = 25/309 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +L V+ +L +F + G+++S +V D R S GYG+V++ A A++
Sbjct: 16 NIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGR-SRGYGFVHFKDDTAAKNAIES 74
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTFG 152
+N + + Y IR++ N++IK L +++ + FS FG
Sbjct: 75 MNGDKEHADAAKAAL-YVANFIRRNARLAALVANFTNVYIKQLLPTVNKDTIEKFFSKFG 133
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-----KQVFVGPFLRKQ 207
I S D G R + F F+ + A AI+ + ++ ++++V +
Sbjct: 134 GITSAATCKDKNG--RAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGEKLYVQRAQPRS 191
Query: 208 ERESTADKTRF-------NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
ER A + ++ NN+YV+N +E DL +F E+G I S VM DA+G S+
Sbjct: 192 ER-LIALRQKYMQCQSLGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVMTDANGNSRG 250
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
FGFV+F++ D A ++ +NG+ + K V AQ++ +R M L+ +F+Q ++
Sbjct: 251 FGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRVQFQQRMQMMLRHMR 310
Query: 321 GLNLYVKNL 329
++L KN
Sbjct: 311 PMSLGGKNF 319
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ L +VN + F++ G + S C+D + R + + N+ +A +A++
Sbjct: 109 TNVYIKQLLPTVNKDTIEKFFSKFGGITSAATCKDKNGR---AFAFCNFEKHDDAVKAIE 165
Query: 100 ELNFTPLNG--KPIRIMY-------SYRDPTIR------KSGAGNIFIKNLDKSIDNKAL 144
+ + G P +Y S R +R +S N++++N D K L
Sbjct: 166 AFHDQVIEGVTPPGEKLYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDVEFSEKDL 225
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
H F +G I SC+V TD+ G SRG+GFV F+N + A +A+ ++NG +LN K + V
Sbjct: 226 HVLFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQ 285
Query: 205 RKQER 209
R+ +R
Sbjct: 286 RRDQR 290
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 162/447 (36%), Positives = 231/447 (51%), Gaps = 83/447 (18%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q + SLYVGDL VN+++L++LF+ +G V+SVRVCRD TR SLGYGYVN+N A +A
Sbjct: 66 QGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAE 125
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+ +LNF L+G+ IRIM RDP R+SG GNIFI L + L DTF FG IL
Sbjct: 126 AAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGKIL 185
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFL-RKQERESTA 213
SCK D G+ RG+GFV F++ + A+ AI + NG D+++ V PF RKQ +
Sbjct: 186 SCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQE 245
Query: 214 DKTR-FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV----MRDADGKSKCFGFVNFDD 268
++T+ F NVYVK+L E++L K+F +G ITS A+ ++D + + +GFVNF D
Sbjct: 246 ERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNFAD 302
Query: 269 PDDAARSVEA----------------LNGKKFDD----KEWYVGKAQKKYEREM---ELK 305
+ A + VE GKK +D E G +++ ++ +L
Sbjct: 303 TEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLS 362
Query: 306 G--KFEQSLKETADK-FEGLNLYVKNLDDSISDDK------------------------- 337
G F++ +ET DK GL ++ D IS K
Sbjct: 363 GFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRRLQERRR 422
Query: 338 ----------------------LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
L++ F E G + S KVMRD G+SR GFV F+T EEA
Sbjct: 423 ELRQRGGNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEA 482
Query: 376 SKALTEMNGKMVVSKPLYVALAQRKEE 402
A+ + N + + +P+YVA ++E
Sbjct: 483 ESAIAKKNRQPLQDRPIYVAFHLTRQE 509
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GN+++KN ++++ + L F G+++S KV D G SR +GFV F E A+SAI
Sbjct: 428 GGNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIA 487
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYV 223
K N L D+ ++V L +QE + +V+V
Sbjct: 488 KKNRQPLQDRPIYVAFHLTRQEAAAAPTAPTAGHVHV 524
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 233/405 (57%), Gaps = 13/405 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD +N+ +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
L + +RI RDP+ R+SG NI +K L KS+D AL + F +G + + +A
Sbjct: 69 AG-AKLGTRFLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTFALKEMFGKYGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDERGESRGYARISFEREESAVDAVKEMDGMEM-DGQAIVVERYQAQHRDEMLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEAL 279
+YVKNL T T+ L+ F ++G ++S V D +S+ FG+V F+ +DAA++VE L
Sbjct: 185 LYVKNLEPTVTDSKLRAFFAKYGEVSSAKVRDLGDAQSEVGFGYVAFEKHEDAAKAVEEL 244
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDKL 338
NGK+ + + ++ E + E+ +E A + NLYVK DD+++ ++L
Sbjct: 245 NGKECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERL 304
Query: 339 KELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPLYVAL 396
+ELF +G S VM D + G+SR GFV+ AS A+ ++NG +S +PL+V
Sbjct: 305 EELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQDLNGSTFLSPRPLFVTY 364
Query: 397 AQRKEERRARLQAQFSQMR----PPVGPRMPMYPPVAPGLGQQLF 437
A RK+ RR L+ + Q R P GP M PP+ +G Q+F
Sbjct: 365 ALRKDARRQNLEERSKQFRMRQNPMNGPNMGGMPPMG-FMGPQMF 408
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +L+ +V DS+L F + G+V S +V RDL +S +G+GYV + +
Sbjct: 180 KQF--TNLYVKNLEPTVTDSKLRAFFAKYGEVSSAKV-RDLGDAQSEVGFGYVAFEKHED 236
Query: 94 ATRALDELNFTPLN----GKPIRI-------------MYSYRDPTIRKSGAGNIFIKNLD 136
A +A++ELN G P+ + R+ + S N+++K D
Sbjct: 237 AAKAVEELNGKECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNG-MLLN 194
++ ++ L + F +G +S V TD G SR +GFV ++ +A AI LNG L+
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQDLNGSTFLS 356
Query: 195 DKQVFVGPFLRKQER 209
+ +FV LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/203 (59%), Positives = 154/203 (75%), Gaps = 2/203 (0%)
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF P+ KPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILS
Sbjct: 1 ALDTMNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILS 60
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-TADK 215
C+VATD S+GYGFV F+ EE+A +AI K+NGMLLN K+VFVG F+ ++ERE DK
Sbjct: 61 CRVATDEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDK 120
Query: 216 T-RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
RF NVY+KN + ++ L IF ++G +TS VM D +GK++ FGFV+F+DP+ A +
Sbjct: 121 ARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEK 180
Query: 275 SVEALNGKKFDDKEWYVGKAQKK 297
+VE LNGK K YVG+AQKK
Sbjct: 181 AVEELNGKDVGGKPLYVGRAQKK 203
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 111/193 (57%), Gaps = 10/193 (5%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ NV++KNL ++ + F FG I S V D + SK +GFV+F+
Sbjct: 21 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFE 80
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A ++ +NG + K+ +VG+ + ERE + L + A +F N+Y+K
Sbjct: 81 TEEAANNAISKVNGMLLNGKKVFVGRFIPRKERE--------RLLGDKARRF--TNVYIK 130
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
N D + D+KL +F ++G +TS KVM D NG +RG GFV+F E A KA+ E+NGK V
Sbjct: 131 NFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDV 190
Query: 388 VSKPLYVALAQRK 400
KPLYV AQ+K
Sbjct: 191 GGKPLYVGRAQKK 203
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 94/167 (56%), Gaps = 7/167 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ +YD F+ G ++S RV D S GYG+V++ A A+ +
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEA-NSKGYGFVHFETEEAANNAISK 91
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + R R G N++IKN +D++ L F +G +
Sbjct: 92 VNGMLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKYGKV 151
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
S KV D G++RG+GFV F++ E A+ A+++LNG + K ++VG
Sbjct: 152 TSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVG 198
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KNLD SI + + + FS FG I SC+V D S+G GFV F T E A+ A++++
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKV 92
Query: 383 NGKMVVSKPLYVA-LAQRKEERR 404
NG ++ K ++V RKE R
Sbjct: 93 NGMLLNGKKVFVGRFIPRKERER 115
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 31 VGD-ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN 89
+GD AR+F T++Y+ + ++D +L +F++ G+V S +V D ++ G+G+V++
Sbjct: 117 LGDKARRF--TNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVD-ENGKNRGFGFVSFE 173
Query: 90 AAHEATRALDELNFTPLNGKPIRI 113
A +A++ELN + GKP+ +
Sbjct: 174 DPECAEKAVEELNGKDVGGKPLYV 197
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 115/202 (56%), Positives = 150/202 (74%), Gaps = 2/202 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ L++ F+ G V+S+RVCRDL RRSLGY YVN+ +A RALD
Sbjct: 13 ASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALD 72
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP++RKSG GN+FIKNLDKSIDNKA++DTFS FGNILSCKV
Sbjct: 73 TMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV 132
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT--R 217
ATD S+GYGFV F+ EE+A +AI K+NGMLLN ++VFVG F+ + ERE + R
Sbjct: 133 ATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARR 192
Query: 218 FNNVYVKNLSETTTEDDLKKIF 239
F NVY+KN + ++ L+++
Sbjct: 193 FMNVYIKNFGDDLDDEKLREML 214
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 113/217 (52%), Gaps = 15/217 (6%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
++++ +L + L + FS+ G +LS +V D + + S GY +V F A+ A+
Sbjct: 12 VASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERAL 71
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
D +N ++ + + + +R+ + K+ NV++KNL ++ + F FG I
Sbjct: 72 DTMNFDMVKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNI 127
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V D + SK +GFV+F+ + A +++ +NG + ++ +VGK + ERE +L
Sbjct: 128 LSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLG 187
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
K A +F +N+Y+KN D + D+KL+E+
Sbjct: 188 QK--------ARRF--MNVYIKNFGDDLDDEKLREML 214
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVEAL 279
+YV +L TE L + F G + S V RD + S + +VNF P DA R+++ +
Sbjct: 15 LYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTM 74
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + + +Q+ + SL+++ N+++KNLD SI + +
Sbjct: 75 NFDMVKGRPIRIMWSQR------------DPSLRKSGVG----NVFIKNLDKSIDNKAMY 118
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+ FS FG I SCKV D S+G GFV F T E A+ A+ ++NG ++ + ++V
Sbjct: 119 DTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVP 178
Query: 400 KEERRARL 407
+ ER +L
Sbjct: 179 RSEREKQL 186
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 155/213 (72%), Gaps = 3/213 (1%)
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD +N + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSC
Sbjct: 1 LDTMNSDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 60
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADK 215
KV D G S+GYGFV F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 61 KVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 119
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN E ++ LK+IF +FG S VM D G+SK FGFV+F+ +DA ++
Sbjct: 120 KEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKA 179
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
V+ +NGK+ + ++ YVG K ER+ ELK KF
Sbjct: 180 VDEMNGKEINGRQVYVGPCPXKVERQTELKRKF 212
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+
Sbjct: 20 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 78
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A R++E +NG +D++ +VG+ + + ERE EL K + E N+Y+K
Sbjct: 79 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK----------EFTNVYIK 128
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
N + + D++LKE+F++FG S KVM D +G S+G GFV+F E+A KA+ EMNGK +
Sbjct: 129 NFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEI 188
Query: 388 VSKPLYVALAQRKEERRARLQAQF 411
+ +YV K ER+ L+ +F
Sbjct: 189 NGRQVYVGPCPXKVERQTELKRKF 212
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 109/178 (61%), Gaps = 10/178 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+++
Sbjct: 32 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEK 89
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGN 153
+N LN + + + ++ R++ G N++IKN + +D++ L + F+ FG
Sbjct: 90 MNGMLLNDRKV-FVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEIFNKFGA 148
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
LS KV TD G+S+G+GFV F+ E A+ A+D++NG +N +QV+VGP K ER++
Sbjct: 149 FLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVGPCPXKVERQT 206
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L ++FN+ G +SV+V D S RS G+G+V++ +
Sbjct: 119 AKEF--TNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSG-RSKGFGFVSFEKHED 175
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N +NG+ + +
Sbjct: 176 AQKAVDEMNGKEINGRQVYV 195
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 159/229 (69%), Gaps = 3/229 (1%)
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+ T SLGY YV++ + RALD +NF + GKP+RIM+S DP++ KS NIFIKN
Sbjct: 1 MITCHSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRIMWSQHDPSLHKSEVSNIFIKN 60
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L KSIDNKAL+DTF FGNILSCKV D G S+GYGFV F+ +E+ + AI+K++GMLLN
Sbjct: 61 LGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLN 119
Query: 195 DKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D +VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG VM
Sbjct: 120 DFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMT 179
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
D GKSK FGFV+F+ +DA ++V +NGK+ + K+ Y+G+AQKK E++
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQ 228
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 15/240 (6%)
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKN 225
S GY +V F + A+D +N ++ K V + + + + K+ +N+++KN
Sbjct: 5 HSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRI----MWSQHDPSLHKSEVSNIFIKN 60
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285
L ++ L F FG I S V+ D +G SK +GFV+F+ + R++E ++G +
Sbjct: 61 LGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLN 119
Query: 286 DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345
D + +VG+ + + ERE EL + A +F N+Y+KN + + D+ LK+LF +F
Sbjct: 120 DFKVFVGQFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDEHLKDLFGKF 169
Query: 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
G KVM D +G S+G GFV+F E+A KA+ EMNGK + K +Y+ AQ+K E++
Sbjct: 170 GPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQT 229
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 8/179 (4%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+++++ +L S+++ LYD F G ++S +V D + S GYG+V++ RA++
Sbjct: 54 SNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG--SKGYGFVHFETQEAVERAIE 111
Query: 100 ELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGN 153
+++ LN + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 112 KMSGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGP 171
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
L KV TD G+S+G+GFV F+ E A+ A++++NG LN KQ+++G +K E+++
Sbjct: 172 ALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQTA 230
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETAD--- 317
+ +V+F P D R+++ +N FD +KGK + + D
Sbjct: 9 YTYVDFQKPTDMERALDTMN---FD-----------------VIKGKPVRIMWSQHDPSL 48
Query: 318 -KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
K E N+++KNL SI + L + F FG I SCKV+ D NG S+G GFV F T E
Sbjct: 49 HKSEVSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVE 107
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410
+A+ +M+G ++ ++V + ++ER A L A+
Sbjct: 108 RAIEKMSGMLLNDFKVFVGQFKSRKEREAELGAR 141
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D L DLF + G + V+V D S +S G+G+V++ +
Sbjct: 142 AKEF--TNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMTDESG-KSKGFGFVSFERHED 198
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A++E+N LNGK I I
Sbjct: 199 AQKAVNEMNGKELNGKQIYI 218
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 173/276 (62%), Gaps = 31/276 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYVGDL V ++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S+RDP +R+SG GNIFIKNL+ SIDNKAL+DTFSTFG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFN 219
+ G SRG+GFV F+ E+A+ AI+ +NGMLLND++V
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKV--------------------R 169
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
+ Y +L+ + F VM ++ SK FGFV F P++A ++V +
Sbjct: 170 SDYPWSLASLCPATLISSCF---------QVMTESS-HSKGFGFVCFSSPEEATKAVTEM 219
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
NG+ K YV AQ+K ER+ L ++ + L +
Sbjct: 220 NGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRS 255
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 48/284 (16%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS +V D + +S GY ++ F A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ + + + R+ ++ N+++KNL + L F FG I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ V+ + G S+ FGFV+F+ + A +++ +NG +D++ ++
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRK---------------VRSD 171
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+ SL S+ L I+SC + + S+G GFV
Sbjct: 172 YPWSLA------------------SLCPATL---------ISSCFQVMTESSHSKGFGFV 204
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+
Sbjct: 205 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 248
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 20/172 (11%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSV 276
+++YV +L TE L ++F G I S V RD A +S + ++NF P DA R++
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISD 335
+ +N + + + S ++ + G+ N+++KNL++SI +
Sbjct: 70 DTMNFEMIKGQPI-----------------RIMWSHRDPGLRRSGMGNIFIKNLENSIDN 112
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
L + FS FG+I S KV+ + +G SRG GFV F T E A KA+ MNG ++
Sbjct: 113 KALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 163
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 233/458 (50%), Gaps = 48/458 (10%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S++VG LD ++N+ +LYD F ++G V SVRVC D T++SLGYGYVN+ +A +AL
Sbjct: 8 SPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKAL 67
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+ L K IRI RDP+ R+SG NI +K L ++D AL + FS FG + +
Sbjct: 68 DQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMFSKFGRLTAIG 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ATD G+SRGY + ++ EESA A+ +LNG+ ++D + V R Q ++
Sbjct: 127 LATDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVE---RYQPHHREEQLKQY 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL + ++ LK++F +FG +TS V + S F +V + + AA++VE
Sbjct: 184 TNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEAAAKAVEE 243
Query: 279 LNGKKFD-DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
L+ K KE + RE + + + + NLYVKN DD+++ +K
Sbjct: 244 LDEKSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFDDTVTSEK 303
Query: 338 LKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPLYVA 395
LKELF FG S VM D +SR GFV+F AS+A+ E++G + +PL+V
Sbjct: 304 LKELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQELHGSTALGPRPLFVT 363
Query: 396 LAQRKEERRARLQ-----------------------AQFSQMRPP--------VGPRMPM 424
A RK+ RR L+ Q M PP + PRMPM
Sbjct: 364 YALRKDARRQTLEDIRNKQPRMRQPPMGGLMSGMMAPQLGFMNPPTMFNGLPFMNPRMPM 423
Query: 425 YP----------PVAPGLGQQLFYGQGPPIIPPQVIYS 452
P P+AP Q+ P P Q + +
Sbjct: 424 MPSAMGMGGPMRPMAPAPMNQVRARPAPQRPPMQAMMA 461
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 145/196 (73%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIRIM+S RDP++RKSG GN+FIKNLD SID+KAL+DTFS FGNILSCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+ A
Sbjct: 122 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 218 FNNVYVKNLSETTTED 233
F NVY+KN E ++
Sbjct: 181 FTNVYIKNFGEEVDDE 196
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RD +S + +VNF P DA R+++
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDK 337
+N K + +Q+ + SL+++ G+ N+++KNLD+SI D
Sbjct: 63 MNFDVIKGKPIRIMWSQR------------DPSLRKS-----GVGNVFIKNLDNSIDDKA 105
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L + FS FG I SCKV+ D NG S+G FV F T E A KA+ +MNG ++ + ++V
Sbjct: 106 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 164
Query: 398 QRKEERRARLQAQ 410
+ ++ER A L A+
Sbjct: 165 KSRKEREAELGAK 177
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 16/210 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + + +R+ + K+ NV++KNL + + L F FG I
Sbjct: 62 TMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V+ D +G SK + FV+F+ + A +++E +NG +D++ +VG+ + + ERE EL
Sbjct: 118 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDD 336
K + E N+Y+KN + + D+
Sbjct: 177 KAK----------EFTNVYIKNFGEEVDDE 196
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 197/343 (57%), Gaps = 40/343 (11%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L ++ L + FS G +LS +V D+ + S GY +V F A+ A+D
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 188 LNGMLLNDK---------------------------QVFVGPFLRKQERESTADKT--RF 218
+N L+ K +VFVG F + +R +T +F
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQF 152
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN + ++ L+K+F +FG ITS VM +GKSK FGFV F +P++A +V+A
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQA 211
Query: 279 LNGKKFD--DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
L+ + D + +V +AQKK ER ELK K EQ E K++G+NLYVKNLD+++ DD
Sbjct: 212 LHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 271
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
LK+ F +G ITS KVM D NG S+G GFV F EEA+ A+TEMN KMV SKPLYVA+
Sbjct: 272 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 331
Query: 397 AQRKEERRARLQAQFSQ------MRPPVGPRMPMYPPVAPGLG 433
AQRKE+RRA+L +Q+ Q M V P MY P PG G
Sbjct: 332 AQRKEDRRAQLASQYMQRLASMRMHGNV-PGAAMYNPTQPGPG 373
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 179/323 (55%), Gaps = 48/323 (14%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ SLYVGDL VN+S L++ F+ G V+S+RVCRD +TR SLGY YVN+ +A R
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDK------------------- 137
A+D +NF L+GKP+RIM+S RDP +R+SGAGNIFIKNLDK
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGET 148
Query: 138 --------------SIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
+ + L F+ FGNI SC+V T G+S+G+GFV F N E A++
Sbjct: 149 AKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAET 207
Query: 184 AIDKLNGMLL--NDKQVFVGPFLRKQERESTADKTRFN------------NVYVKNLSET 229
A+ L+ + D ++ V +K ER + K N+YVKNL ET
Sbjct: 208 AVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDET 267
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
+D LKK F +G ITS VM D +G+SK FGFV F+ P++A +V +N K K
Sbjct: 268 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPL 327
Query: 290 YVGKAQKKYEREMELKGKFEQSL 312
YV AQ+K +R +L ++ Q L
Sbjct: 328 YVAIAQRKEDRRAQLASQYMQRL 350
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 220/387 (56%), Gaps = 24/387 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
S++VG LD + + +LYD F ++G V SVRVC D +T++SLGYGYVN+ +A +ALD+
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
T L + +RI RDP+ R+SG NI +K L K++D AL + FS FG + + +A
Sbjct: 69 AG-TKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAIGLA 127
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
D G+SRGY + F+ EESA A+ +++GM + D Q V + Q R+ + F N
Sbjct: 128 CDEKGESRGYARISFEREESAVEAVKEMDGMEM-DGQAIVVERYQAQHRDELLKQ--FTN 184
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG-KSKC-FGFVNFDDPDDAARSVEA 278
+YVKNL T++ L+ F +G ++S V RD G +S+ G+V F+ +DAAR+VE
Sbjct: 185 LYVKNLDPAVTDEKLRAFFARYGAVSSAKV-RDLGGVQSEVGLGYVAFEKHEDAARAVEE 243
Query: 279 LNGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNLD 330
LNG KE + KA+ + + + + + K+ NLYVK D
Sbjct: 244 LNG-----KECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYP--NLYVKGFD 296
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGK-MVV 388
D+++ ++L+ELF +G S VM D G+SR GFV+ AS+A+ E+NG +
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLC 356
Query: 389 SKPLYVALAQRKEERRARLQAQFSQMR 415
+PL+V A RK+ RR L+ + Q R
Sbjct: 357 PRPLFVTYALRKDARRQNLEERSKQFR 383
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 33/200 (16%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNYNAAHE 93
+QF T+LYV +LD +V D +L F + G V S +V RDL +S +G GYV + +
Sbjct: 180 KQF--TNLYVKNLDPAVTDEKLRAFFARYGAVSSAKV-RDLGGVQSEVGLGYVAFEKHED 236
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRK----------------------SGAGNIF 131
A RA++E LNGK I + + + S N++
Sbjct: 237 AARAVEE-----LNGKECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNLY 291
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
+K D ++ ++ L + F +G +S V D G SR +GFV ++ +A AI +LNG
Sbjct: 292 VKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNG 351
Query: 191 -MLLNDKQVFVGPFLRKQER 209
L + +FV LRK R
Sbjct: 352 STFLCPRPLFVTYALRKDAR 371
>gi|147835778|emb|CAN72942.1| hypothetical protein VITISV_011270 [Vitis vinifera]
Length = 185
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/157 (75%), Positives = 127/157 (80%), Gaps = 11/157 (7%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFN 61
AQVQVQPQ P PA N A GG QFV+TSLYVGDL+L+VND QLYDLFN
Sbjct: 3 AQVQVQPQGP-------GPAPNSAAGAGG----NQFVTTSLYVGDLELNVNDPQLYDLFN 51
Query: 62 QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
QMG VVSVRVCRDLSTRRSLGYGYVNY+ +A RALD LNFTPLNGKP+RIMYS+ DP+
Sbjct: 52 QMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPLRIMYSHCDPS 111
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
IRKSG GNIFIKNLDK ID+KALHDTFS FGNILSCK
Sbjct: 112 IRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCK 148
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L + L +F + G + S V RD + +S +G+VN+ +P DAAR+++ L
Sbjct: 32 LYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + K + + + S++++ N+++KNLD I L
Sbjct: 92 NFTPLNGKPLRI------------MYSHCDPSIRKSGTG----NIFIKNLDKGIDHKALH 135
Query: 340 ELFSEFGTITSCK 352
+ FS FG I SCK
Sbjct: 136 DTFSAFGNILSCK 148
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188
+++ +L+ ++++ L+D F+ G ++S +V D S +S GYG+V + N + A A+D L
Sbjct: 32 LYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N LN K + + + + K+ N+++KNL + L F FG I S
Sbjct: 92 NFTPLNGKPLRI----MYSHCDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSC 147
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEE 374
++F +LYV +L+ +++D +L +LF++ G + S +V RD S G G+V +S ++
Sbjct: 24 GNQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQD 83
Query: 375 ASKALTEMNGKMVVSKPLYVALAQ 398
A++AL +N + KPL + +
Sbjct: 84 AARALDVLNFTPLNGKPLRIMYSH 107
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 216/381 (56%), Gaps = 23/381 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S++VG LD ++N+ +LYD F ++G V SVRVC D T++SLGYGYVN+ +A +AL
Sbjct: 8 SPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKAL 67
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+ L K IRI RDP+ R+SG NI +K L ++D AL + FS +G + +
Sbjct: 68 DQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKYGRLTAIG 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ATD G+SRGY + ++ EESA A+ +LNG+ ++D + V R Q ++
Sbjct: 127 LATDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITVE---RYQPHHREEQLKQY 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVE 277
N+YVKNL + ++ LK++F FG +TS V RD G+ FG+V + + AA++VE
Sbjct: 184 TNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-RDLAGRPTVGFGYVAYATHEAAAKAVE 242
Query: 278 ALNGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNL 329
L DDKE + K K + + + ++ K+ NLYVKN
Sbjct: 243 EL-----DDKESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQHSKYP--NLYVKNF 295
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
DD+++ ++LK LF FG S VM D +SR GFV+F A++A+ E++G +
Sbjct: 296 DDTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSAAQAIQELHGSTAL 355
Query: 389 S-KPLYVALAQRKEERRARLQ 408
+PL+V+ A RK+ RR L+
Sbjct: 356 GPRPLFVSYALRKDARRQTLE 376
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 213/380 (56%), Gaps = 21/380 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S++VG LD ++N+ +LYD F ++G V SVRVC D T++SLGYGYVN+ +A +AL
Sbjct: 8 SPSIWVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKAL 67
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+ L K IRI RDP+ R+SG NI +K L S+D AL + FS +G + +
Sbjct: 68 DQAGVK-LGSKHIRIAKIQRDPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLTAIG 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+AT+ G+SRGY + ++ EESA A+ ++NGM+++D + V R Q +F
Sbjct: 127 LATNENGESRGYARISYEKEESAIQAVQEVNGMVIDDCAITVE---RYQPHHREEQLKQF 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL + ++ LK++F FG +TS V ++ F +V + + AA++VE
Sbjct: 184 TNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKAVEE 243
Query: 279 LNGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNLD 330
L D+KE + K K + + + ++ K+ NLYVKN D
Sbjct: 244 L-----DEKESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQHSKYP--NLYVKNFD 296
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D+++ ++LKELF G S VM D +SR GFV+F AS+A+ E++G +
Sbjct: 297 DTVTSERLKELFERCGETVSVSVMMDRATRVSRCFGFVSFKEQSAASRAIQELHGSTALG 356
Query: 390 -KPLYVALAQRKEERRARLQ 408
+PL+V A RK+ RR L+
Sbjct: 357 PRPLFVTYALRKDARRQTLE 376
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 109/178 (61%), Positives = 139/178 (78%), Gaps = 1/178 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGKPVRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 399 RKEERRARLQAQ 410
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 104/193 (53%), Gaps = 6/193 (3%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 298 YEREMELKGKFEQ 310
ERE EL + ++
Sbjct: 177 KEREAELGARAKE 189
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/178 (61%), Positives = 139/178 (78%), Gaps = 1/178 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 69
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 70 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 129
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 130 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 186
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 18/198 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 77 MNFDVIKGKPVRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 120
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG ++ + ++V +
Sbjct: 121 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179
Query: 399 RKEERRARLQAQFSQMRP 416
++ER A L A+ + P
Sbjct: 180 SRKEREAELGARAKEFYP 197
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 104/193 (53%), Gaps = 6/193 (3%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 66
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 67 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 122
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++ +VG+ + +
Sbjct: 123 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181
Query: 298 YEREMELKGKFEQ 310
ERE EL + ++
Sbjct: 182 KEREAELGARAKE 194
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/201 (53%), Positives = 150/201 (74%), Gaps = 2/201 (0%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
A G + + S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY Y
Sbjct: 24 AATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAY 83
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
VN+N +A+++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+
Sbjct: 84 VNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALY 143
Query: 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205
DTFS FG+ILS K+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L
Sbjct: 144 DTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLS 203
Query: 206 KQERESTADKTR--FNNVYVK 224
++ER+S ++T+ + N+YVK
Sbjct: 204 RKERDSQLEETKAHYTNLYVK 224
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAK 182
++ + ++++ +L+ S+ L+D FS G++ S +V D++ + S GY +V F++ E+ +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI++LN + + + +R+ + K N+++KNL L F F
Sbjct: 94 KAIEQLNYTPIKGRLCRI----MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVF 149
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G I S+ + D +GKSK FGFV+F++ A +++ALNG + +E YV + ER+
Sbjct: 150 GDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 303 ELKGKFEQSLKETADKFEGLNLYVK 327
+ L+ET + NLYVK
Sbjct: 210 Q--------LEETKAHY--TNLYVK 224
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDD 268
ES + + ++YV +L + +E L IF G ++S V RDA K+ + +VNF+D
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+ +++E LN + + +Q+ + SL++ N+++KN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQR------------DPSLRKKGSG----NIFIKN 132
Query: 329 LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
L I + L + FS FG I S K+ D NG S+G GFV F A +A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 389 SKPLYVALAQRKEERRARLQ 408
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 213/381 (55%), Gaps = 23/381 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S S++VG LD ++N+ +LYD F ++G V SVRVC D T++SLGYGYVN+ +A +AL
Sbjct: 8 SPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKAL 67
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
D+ L K IRI RDP+ R+SG NI +K L ++D AL + FS +G + +
Sbjct: 68 DQAGVK-LGSKHIRIARIQRDPSKRRSGVTNIVVKKLPPTVDTYALKEMFSKYGRLTAIG 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+AT+ G+SRGY + ++ EESA A+ +NGM ++D + V R Q +
Sbjct: 127 LATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITVE---RYQPHHREEQLKLY 183
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSVE 277
N+YVKNL + ++ LK++F +G +TS V RD GK S F +V + + A ++VE
Sbjct: 184 TNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKV-RDLGGKMSVGFAYVAYATHEAAVKAVE 242
Query: 278 ALNGKKFDDKEWYVGKAQKKYE--------REMELKGKFEQSLKETADKFEGLNLYVKNL 329
L DDKE + K K + + + ++ K+ NLYVKN
Sbjct: 243 EL-----DDKENPLAKEGMKLSVCRFRSREERQRERERLRRERQQLYSKYP--NLYVKNF 295
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388
DD+++ ++LKELF FG S VM D +SR GFV+F AS+A+ E++G +
Sbjct: 296 DDTVTSERLKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQNSASRAIQELHGSTAL 355
Query: 389 S-KPLYVALAQRKEERRARLQ 408
+PL+V A RK+ RR L+
Sbjct: 356 GPRPLFVTYALRKDARRQTLE 376
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 176/274 (64%), Gaps = 6/274 (2%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL + V +S L +F+++G+V S+++CRD ST S GY YVN+ +A +A
Sbjct: 35 CSLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFK 94
Query: 100 ELNF---TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
LN+ L+ KP+RIM+ +D ++R SG GN+FIKN+ + DNK+L FS FG ILS
Sbjct: 95 LLNYYTDETLHYKPLRIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKILS 154
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-K 215
CK+A D +S GYGFV + E+ +K AI+K+N ++ +++FVGPF+ K +R + + K
Sbjct: 155 CKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRNNRNNSK 214
Query: 216 TRFNNVYVKN-LSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
RF NVY+KN L + E +K +F FG ITS + + A+ F FVNF++P+DA
Sbjct: 215 LRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPK-ANEAPLGFAFVNFENPEDAED 273
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
++ +NGKK K YVGKA+ + ER+ L KF
Sbjct: 274 AIFKMNGKKIKGKTLYVGKAETRIERQRRLAKKF 307
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 147/296 (49%), Gaps = 23/296 (7%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEES 180
I+ ++++ +L ++ +L FS G + S ++ D S G SRGY +V F N +
Sbjct: 29 IKIKNPCSLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKD 88
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-RFN---NVYVKNLSETTTEDDLK 236
A+ A LN D+ + P LR + DK+ RF+ N+++KN+ L
Sbjct: 89 AQKAFKLLN--YYTDETLHYKP-LRIMWVQK--DKSLRFSGTGNLFIKNIPRRYDNKSLS 143
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K+F +FG I S + D + +S +GFV++ + D+ +++E +N D ++ +VG
Sbjct: 144 KLFSQFGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFIS 203
Query: 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKN-LDDSISDDKLKELFSEFGTITSCKVMR 355
K +R K N+Y+KN L + ++ +K+LF FG ITS + +
Sbjct: 204 KVKRN-----------NRNNSKLRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPK 252
Query: 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
N G FV F E+A A+ +MNGK + K LYV A+ + ER+ RL +F
Sbjct: 253 -ANEAPLGFAFVNFENPEDAEDAIFKMNGKKIKGKTLYVGKAETRIERQRRLAKKF 307
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 132/175 (75%), Gaps = 1/175 (0%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V +S LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 255 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKR 314
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ +NF +NG+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 315 ALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 374
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
CKVA D G +GYGFV F +ESA+ AID LNGM LN +++FVG F +ERE+
Sbjct: 375 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREA 428
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 319 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 374
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ALNG + ++ +VG+ + ERE E
Sbjct: 375 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 433
Query: 308 FEQS 311
QS
Sbjct: 434 ARQS 437
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 319 MNFDVINGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 362
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ +NG + + ++V +
Sbjct: 363 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 421
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 422 SHKEREAERGAWARQ 436
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL V ++ LY+ F+ G+++S+R+CRD TRRSLGY YVNY +A RAL
Sbjct: 350 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 409
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FSTFGNILSCK
Sbjct: 410 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCK 469
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
VA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERES +D
Sbjct: 470 VACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKERESWSD 524
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Query: 112 RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGY 170
RI+ + DP ++++ +L + L++ FS G ILS ++ D + + S GY
Sbjct: 340 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 394
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
+V + AK A++ LN ++ + V + +R+ + K+ NV++KNL +T
Sbjct: 395 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 450
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
L IF FG I S V D G K +GFV+F + + A R+++ +NG + ++ +
Sbjct: 451 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 509
Query: 291 VGKAQKKYERE 301
VG+ + ERE
Sbjct: 510 VGRFKSHKERE 520
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 18/193 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 352 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 411
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 412 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 455
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 456 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFK 514
Query: 399 RKEERRARLQAQF 411
+ER + Q
Sbjct: 515 SHKERESWSDPQL 527
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 132/175 (75%), Gaps = 1/175 (0%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F + SLYVGDL V +S LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 237 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKR 296
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ +NF +NG+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 297 ALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 356
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
CKVA D G +GYGFV F +ESA+ AID LNGM LN +++FVG F +ERE+
Sbjct: 357 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREA 410
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 301 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 356
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ALNG + ++ +VG+ + ERE E
Sbjct: 357 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 415
Query: 308 FEQS 311
QS
Sbjct: 416 ARQS 419
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 301 MNFDVINGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 344
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ +NG + + ++V +
Sbjct: 345 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 403
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 404 SHKEREAERGAWARQ 418
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 142/197 (72%), Gaps = 3/197 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVGDL V ++ LY+ F+ G+++S+R+CRD TRRSLGY YVNY +A RAL
Sbjct: 441 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 500
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FSTFGNILSCK
Sbjct: 501 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCK 560
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKT 216
VA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 561 VACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWAR 619
Query: 217 RFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 620 QSTSADVKDFDEDTDEE 636
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 11/210 (5%)
Query: 112 RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGY 170
RI+ + DP ++++ +L + L++ FS G ILS ++ D + + S GY
Sbjct: 431 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 485
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
+V + AK A++ LN ++ + V + +R+ + K+ NV++KNL +T
Sbjct: 486 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 541
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
L IF FG I S V D G K +GFV+F + + A R+++ +NG + ++ +
Sbjct: 542 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 600
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE 320
VG+ + ERE E QS F+
Sbjct: 601 VGRFKSHKEREAERGAWARQSTSADVKDFD 630
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 443 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 502
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 503 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 546
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 547 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFK 605
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 606 SHKEREAERGAWARQ 620
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 142/207 (68%), Gaps = 3/207 (1%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GG F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY
Sbjct: 276 GGYEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 335
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+A RAL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ F
Sbjct: 336 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 395
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FGNILSCKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +E
Sbjct: 396 SAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKE 454
Query: 209 REST--ADKTRFNNVYVKNLSETTTED 233
RE+ A + + VK+ E T E+
Sbjct: 455 REAERGAWARQSTSADVKDFEEDTDEE 481
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 348 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 403
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 404 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 462
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 463 ARQSTSADVKDFE 475
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 348 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 391
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 392 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 450
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 451 SHKEREAERGAWARQ 465
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 327 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 386
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 387 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 447 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 506 ARQSTSADVKDFEEDTDEE 524
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 391 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 447 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 506 ARQSTSADVKDFE 518
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 391 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 434
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 435 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 493
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 494 SHKEREAERGAWARQ 508
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 135/184 (73%), Gaps = 2/184 (1%)
Query: 29 GGVGDAR-QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
GG D F + SLYVGDL V +S LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 19 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVN 78
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
Y +A RAL+ +NF +NG+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++
Sbjct: 79 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 138
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSCKVA D G +GYGFV F +ESA+ AID LNGM LN +++FVG F +
Sbjct: 139 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHK 197
Query: 208 ERES 211
ERE+
Sbjct: 198 EREA 201
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 6/184 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++N + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 92 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 147
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ALNG + ++ +VG+ + ERE E
Sbjct: 148 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAW 206
Query: 308 FEQS 311
QS
Sbjct: 207 ARQS 210
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 92 MNFDVINGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 135
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ +NG + + ++V +
Sbjct: 136 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 194
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 195 SHKEREAERGAWARQ 209
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 332 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 391
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 392 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 452 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 511 ARQSTSADVKDFEEDTDEE 529
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 395
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 396 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 452 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 511 ARQSTSADVKDFE 523
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 395
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 396 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 439
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 440 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 498
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 499 SHKEREAERGAWARQ 513
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 110/208 (52%), Positives = 143/208 (68%), Gaps = 5/208 (2%)
Query: 30 GVGDARQ--FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
G G R F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 279 GRGSERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN 338
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
Y +A RAL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++
Sbjct: 339 YQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 398
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS FGNILSCKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +
Sbjct: 399 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHK 457
Query: 208 EREST--ADKTRFNNVYVKNLSETTTED 233
ERE+ A + + VK+ E T E+
Sbjct: 458 EREAERGAWARQSTSADVKDFEEDTDEE 485
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 292 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 351
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 352 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 407
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 408 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 466
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 467 ARQSTSADVKDFE 479
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 292 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 351
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 352 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 395
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 396 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 454
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 455 SHKEREAERGAWARQ 469
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/190 (56%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +DA ++VE
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+K
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALA
Sbjct: 121 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 398 QRKEERRARL 407
QRKEER+A L
Sbjct: 180 QRKEERKAHL 189
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 115/188 (61%), Gaps = 13/188 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKN + +D+++L + FS FG LS KV D G+S+G+GFV ++ E A A++++
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLK 236
NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T ++ L+
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 122
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV AQ+
Sbjct: 123 KEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 181
Query: 297 KYEREMEL 304
K ER+ L
Sbjct: 182 KEERKAHL 189
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 18/188 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + V+D L +LF+Q G+ +SV+V RD + +S G+G+V+Y +A +A++
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHEDANKAVE 60
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N ++GK I R + I + N++IKNLD +ID++
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++V
Sbjct: 121 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 204 LRKQERES 211
RK+ER++
Sbjct: 180 QRKEERKA 187
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 68/93 (73%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+Y+KN + + D+ LKELFS+FG S KVMRDPNG S+G GFV++ E+A+KA+ EM
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
NGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 95
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 101 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 158
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 159 KAVTEMNGRIVGSKPLYVALAQR 181
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/165 (61%), Positives = 129/165 (78%), Gaps = 1/165 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++V
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGKPVRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
+ FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG ++
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ K V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
F FG I S V+ D +G SK +GFV+F+ + A R++E +NG +D++
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVA 368
+ +A + +LYV +L +++ L E FS G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
F +A +AL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 142/207 (68%), Gaps = 3/207 (1%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
GG F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY
Sbjct: 40 GGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 99
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+A RAL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ F
Sbjct: 100 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 159
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FGNILSCKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +E
Sbjct: 160 SAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKE 218
Query: 209 REST--ADKTRFNNVYVKNLSETTTED 233
RE+ A + + VK+ E T E+
Sbjct: 219 REAERGAWARQSTSADVKDFEEDTDEE 245
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 112 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 167
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 168 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 226
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 227 ARQSTSADVKDFE 239
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 112 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 155
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 156 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 214
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 215 SHKEREAERGAWARQ 229
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 2 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 61
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 62 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 121
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 122 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 180
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 181 ARQSTSADVKDFEEDTDEE 199
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 5 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 64
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 65 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 120
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 121 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 179
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 180 WARQSTSADVKDFE 193
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 6 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 65
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 66 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 109
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 110 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 168
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 169 SHKEREAERGAWARQ 183
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A R
Sbjct: 92 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 151
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 152 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 211
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 212 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 270
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 271 ARQSTSADVKDFEEDTDEE 289
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 96 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 155
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 156 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 211
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 212 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 270
Query: 308 FEQSLKETADKFE 320
QS FE
Sbjct: 271 ARQSTSADVKDFE 283
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 96 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 155
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 156 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 199
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 200 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 258
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 259 SHKEREAERGAWARQ 273
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FSTFGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTGADCKGFE 190
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 138/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ F G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/196 (54%), Positives = 139/196 (70%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTR 217
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 218 FNNVYVKNLSETTTED 233
+ VK+ E T E+
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 218/390 (55%), Gaps = 14/390 (3%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++T ++VGDL +++S L F + G+++ S V + T S + +V + +A
Sbjct: 4 LTTQIFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDS-SFAFVTFATHEQAA 62
Query: 96 RALDELNFTPLNGKPIRIMYS-YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+A+ LN+T L+G+PIRI++ I KSG G++FI LD+SI+ LHD FS FG I
Sbjct: 63 KAMKNLNYTKLDGRPIRILWCDTETKAIIKSGRGSLFINGLDESIEVSQLHDAFSNFGEI 122
Query: 155 LSCKVA-TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
+SCK+ TD G+SRGYG++QF N E+A+ A +L +N K + + + RK R
Sbjct: 123 ISCKIPLTD--GKSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRRNPDE 180
Query: 214 DKTRFNNVYVKNL--SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
D F NVY+K L + T++DL+KIF FG I + ++ +D +G SK FGF NF +D
Sbjct: 181 D---FTNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHED 237
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE LNG++ V + K E+E+ K + +++ A++ G NLYVK+
Sbjct: 238 AVKAVEGLNGQEMFGVTLQVNRLMSKREKELYNIKKHTEKVEKFAEETNGRNLYVKSFSK 297
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
++D + +E FS+FG I K+ R P S+G GFV + + E+A A+ + +
Sbjct: 298 DVTDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAIEMAMLERLHGD 357
Query: 391 PLYVALAQRKEERRARLQAQFSQMRPPVGP 420
YV Q K R++ + + RP P
Sbjct: 358 LPYVGFFQTKAAHE-RVKVKNTHPRPSAVP 386
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 129/172 (75%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADCKDFE 190
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 129/172 (75%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
A D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 62 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGA 176
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 177 WARQSTSADVKDFE 190
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 179/275 (65%), Gaps = 6/275 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
ST LYVGDL L++ + + +F +G + SV++ RD+S+ +GY +V + +A RAL
Sbjct: 39 STCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERAL 98
Query: 99 DELN--FTPLN-GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+LN F P KP+R+M+ +D + KSG GNIFIKNL D+K+L F FG IL
Sbjct: 99 TKLNYYFDPEKMKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDFGKIL 158
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-D 214
SCKVA D G S GYGFV F++E+++K AI+K NG+++ +K++FVGPFL +++R++
Sbjct: 159 SCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDRKNFGMT 218
Query: 215 KTRFNNVYVKNLS-ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
KT F N+Y+KN+S E E +K +F FG ITS + ++ + +K F FVN++ P++A
Sbjct: 219 KTGFTNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKNNNF-TKGFAFVNYELPEEAE 277
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
++ +N KK + YVGKA+ K ER+ L+ KF
Sbjct: 278 DAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKF 312
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 152/294 (51%), Gaps = 19/294 (6%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188
+++ +L ++ + + F T G + S K+ D S G+ GY FV+F+N + A+ A+ KL
Sbjct: 42 LYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKL 101
Query: 189 NGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N D + P L +++ K+ N+++KNL L+K+F +FG I S
Sbjct: 102 NYYF--DPEKMKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDFGKILS 159
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D +G S +GFV+F+D + ++E NG +K+ +VG + +R
Sbjct: 160 CKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDR------- 212
Query: 308 FEQSLKETADKFEGLNLYVKNLD-DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
++ T F N+Y+KN+ ++ ++ +K+LF FG ITS + ++ N ++G F
Sbjct: 213 --KNFGMTKTGFT--NIYIKNISPENCNETFIKDLFDIFGKITSIYIPKN-NNFTKGFAF 267
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGP 420
V + EEA A+ MN K + + LYV A+ K ER+ LQ +F + +GP
Sbjct: 268 VNYELPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKF--LEKKIGP 319
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 129/172 (75%), Gaps = 1/172 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALE 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL KSIDNKAL++ FS FGNILSCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILSCKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
A D G +GYGFV F +ESA+ AI+ +NGM LN +++FVG F +ERE+
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREA 172
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL ++ L IF FG I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILS 118
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V D G K +GFV+F + A R++ A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 308 FEQSLKETADKFE 320
QS F+
Sbjct: 178 ARQSTSGDVKGFQ 190
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL SI + L
Sbjct: 63 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKSIDNKAL 106
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFK 165
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 166 SHKEREAERGAWARQ 180
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 149/239 (62%), Gaps = 22/239 (9%)
Query: 235 LKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
L+++F EFG ITS VM D +GKSK FGFV F D + A +V+ALNGK F D++ YVG+A
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 295 QKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
QKK ER EL+ FE+ E + ++ +G+NLYVKNLDDSI D +LK+ F FG ITS KV
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
M D N S+G GFV FS EEA+KA+TEMNGK+ SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Query: 414 M--------------------RPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYS 452
PP GP + Y AP Y Q +PPQ +S
Sbjct: 190 RVNPHRNNYPNQVSVNTLISGGPPGGPSILPY-AFAPNASTPRVYTQSAAFMPPQNRWS 247
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 109/189 (57%), Gaps = 13/189 (6%)
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F FG I S KV D G+S+G+GFV F + E+A+SA+ LNG + D+Q++VG
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 204 LRKQER-------------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+K ER E ++ T+ N+YVKNL ++ + LK+ F FG ITS V
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
M D++ +SK FGFV F +P++A ++V +NGK K YV AQ+K +R+ L ++ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Query: 311 SLKETADKF 319
+ + +
Sbjct: 190 RVNPHRNNY 198
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 18/174 (10%)
Query: 55 QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114
+L ++F + G++ S +V D +S G+G+V + + A A+ LN + + +
Sbjct: 9 KLREMFLEFGEITSAKVMID-ENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVG 67
Query: 115 YSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ + + + R + N+++KNLD SID+ L F FGNI S
Sbjct: 68 RAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSA 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
KV TDS +S+G+GFV F N E A A+ ++NG + K ++V RK++R++
Sbjct: 128 KVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKA 181
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E+F EFG ITS KVM D NG S+G GFV F +E A A+ +NGKM + LYV
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 397 AQRKEERRARLQAQFSQMR 415
AQ+K ER L++ F + R
Sbjct: 69 AQKKNERLDELRSHFEKQR 87
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV +LD S++D++L F G + S +V D S RS G+G+V ++ EAT+A+ E
Sbjct: 99 NLYVKNLDDSIDDTRLKQEFVVFGNITSAKVMTD-SNNRSKGFGFVCFSNPEEATKAVTE 157
Query: 101 LNFTPLNGKPIRIMYSYR 118
+N KP+ + + R
Sbjct: 158 MNGKICGSKPLYVALAQR 175
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 139/199 (69%), Gaps = 3/199 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
F SLYVGDL V ++ LY+ F+ G ++S+ +CRD TRRSLGY YVNY +A R
Sbjct: 42 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKR 101
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
AL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILS
Sbjct: 102 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 161
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
CKVA D G +GYGFV F +ESA+ AID +NGM LN +++FVG F +ERE+ A
Sbjct: 162 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 220
Query: 215 KTRFNNVYVKNLSETTTED 233
+ + VK+ E T E+
Sbjct: 221 ARQSTSADVKDFEEDTDEE 239
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 6/194 (3%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS + D + + S GY +V + AK A++
Sbjct: 45 ASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALE 104
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 105 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 160
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S V D G K +GFV+F + A R+++ +NG + ++ +VG+ + ERE E
Sbjct: 161 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGA 219
Query: 307 KFEQSLKETADKFE 320
QS FE
Sbjct: 220 WARQSTSADVKDFE 233
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S ++ RD +S + +VN+ P DA R++E
Sbjct: 46 SLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALET 105
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 106 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 149
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+FS FG I SCKV D G +G GFV F E A +A+ MNG + + ++V +
Sbjct: 150 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 208
Query: 399 RKEERRARLQAQFSQ 413
+ER A A Q
Sbjct: 209 SHKEREAERGAWARQ 223
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 171/253 (67%), Gaps = 5/253 (1%)
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S FGNILSCKV D G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +E
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 209 RES---TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
R + T D+ F NV+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
++ + A ++V L+GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD++I+D+KLKE FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG+
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGR 238
Query: 386 MVVSKPLYVALAQ 398
+V SKPL+V L Q
Sbjct: 239 VVGSKPLHVTLGQ 251
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 10/164 (6%)
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
FG I S V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER
Sbjct: 3 FGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERA 61
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
E++ T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S
Sbjct: 62 AEVR---------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKS 112
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
+G GFV + T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 113 KGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 156
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 139/257 (54%), Gaps = 26/257 (10%)
Query: 63 MGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI----MYSY 117
G ++S +V C D ++ GY YV++++ A RA+ +N LN + + +
Sbjct: 3 FGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 118 RDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQ 174
R +R ++ N+F+KN+ ID++ L + F +G S KV D+ G+S+G+GFV+
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER----------ESTADKTRFNNV--Y 222
++ E+A+ A+ L+G ++ K ++VG +K ER +K+R V Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
+KNL ET ++ LK+ F FG I+ VM + G+ K FG V F ++A ++V+ +NG+
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGR 238
Query: 283 KFDDKEWYV--GKAQKK 297
K +V G+A+++
Sbjct: 239 VVGSKPLHVTLGQARRR 255
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +LD ++ND +L + F+ G + +V ++ + G+G V +++ EAT+A+DE+
Sbjct: 178 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEM 235
Query: 102 NFTPLNGKPIRI 113
N + KP+ +
Sbjct: 236 NGRVVGSKPLHV 247
>gi|123407356|ref|XP_001302991.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884332|gb|EAX90061.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 477
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 220/410 (53%), Gaps = 33/410 (8%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL SV+++ + ++F G S V + +V + + A RA+ E+
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 102 NFTPLNGKPIRIMYSYRDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N+T L+G PIRI++S DP + K+ G +FI+ LD++I+ LHD FS FG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ + G+SRGYGF+ F E+ AK A L +N K + + F +K R++ + F
Sbjct: 126 IPLTN-GKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQI-EFYQKPTRKNPEET--F 181
Query: 219 NNVYVKNLSETT--TEDDLKKIFGEFGIITST-----AVMRDADGKSKCFGFVNFDDPDD 271
NV++K L T+DDL F EFG T A+ R DG S FGF NF +D
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHED 241
Query: 272 AARSVEALNGKKFDDKE--WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
A ++V+ALNGK+ + + + +AQ K ER+ L + + + ++ G NLYVKN
Sbjct: 242 AVKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNLYVKNF 301
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKAL-----TEM 382
D S++D++ KE F +FG + C + R+ S+G GFV F T E A AL T +
Sbjct: 302 DQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALENAVITPL 361
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMP--MYPPVAP 430
NGK Y+ L + KEER R +A + + P G +P + PV P
Sbjct: 362 NGKTP-----YIGLFKMKEERE-REKASNQRKQQPKGAMIPNTIGGPVIP 405
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 144/288 (50%), Gaps = 28/288 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++ LD ++ SQL+D F+ G++VS ++ L+ +S GYG++ + +A RA +
Sbjct: 96 ALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKTD 153
Query: 101 LNFTPLNGKPIRIMYSYRDPTIR--KSGAGNIFIKNLDKSI--DNKALHDTFSTFGNILS 156
L +NGKPI+I + Y+ PT + + N+FIK L I + L + F FG+ +
Sbjct: 154 LADASINGKPIQIEF-YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVV 212
Query: 157 CKVATDSL-----GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG---------- 201
A ++ G S +GF F + E A A+D LNG +V
Sbjct: 213 TGKANPAIKRKEDGSSCEFGFCNFKHHEDAVKAVDALNGKQHESGKVTFSCCRAQTKAER 272
Query: 202 -PFLRKQE---RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-- 255
FL KQ R ++TR N+YVKN ++ T++ K+ F +FG + ++ R+A
Sbjct: 273 QAFLAKQSAEFRRRLNEETRGRNLYVKNFDQSVTDEQFKEYFEQFGEVEKCSIRREAQEP 332
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+SK FGFV F + A ++E + K Y+G + K ERE E
Sbjct: 333 HESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERERE 380
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ V+V +L + E+ +K+IF ++G S T ++ K F FV F+ + A R++
Sbjct: 5 WKEVFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAI 64
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+N K D + ++ + + A K L+++ LD++I
Sbjct: 65 SEVNYTKLDG---------------VPIRILWSDPGTKRAIKNNVGALFIRGLDENIEVS 109
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L + FS FG I SCK+ NG SRG GF+ F ++A +A T++ + KP+ +
Sbjct: 110 QLHDAFSNFGEIVSCKIPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEF 168
Query: 397 AQR 399
Q+
Sbjct: 169 YQK 171
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 123/159 (77%), Gaps = 1/159 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 10 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 69
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FGNILSCKV
Sbjct: 70 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 129
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
D G SRGYGFV F+ E+A AI+ +NGMLLND++V
Sbjct: 130 VCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 167
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD A +S + ++NF P DA R+++
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + + +Q+ + L+++ N+++KNLDDSI + L
Sbjct: 71 MNFEVIKGRPIRIMWSQR------------DPGLRKSGVG----NVFIKNLDDSIDNKAL 114
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
+ FS FG I SCKV+ D NG SRG GFV F T E A++A+ MNG ++
Sbjct: 115 YDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLL 162
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G I+S +V D + +S GY ++ F A+ A+D
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ + + + +R+ K+ NV++KNL ++ L F FG I S
Sbjct: 71 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
V+ D +G S+ +GFV+F+ + A R++E +NG +D++
Sbjct: 127 CKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRK 166
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTE 381
+LYV +L +++ L E FS G I S +V RD S G ++ F +A +AL
Sbjct: 11 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 70
Query: 382 MNGKMVVSKPLYVALAQR 399
MN +++ +P+ + +QR
Sbjct: 71 MNFEVIKGRPIRIMWSQR 88
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/194 (52%), Positives = 136/194 (70%), Gaps = 6/194 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKV + G+S+G+GFV F + E A A+ ++NG ++ K ++V RK+ER
Sbjct: 125 ILSCKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER---- 179
Query: 214 DKTRFNNVYVKNLS 227
K N Y++ ++
Sbjct: 180 -KAHLTNQYMQRVA 192
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 115/195 (58%), Gaps = 18/195 (9%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGKPIRIMWSQR------------DPSLRKSGVG----NVFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I SCKVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 116 YDTFSAFGNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 174
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 175 RKEERKAHLTNQYMQ 189
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G +LS +V D + + S GY +V F A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + + +R+ + K+ NV++KNL ++ L F FG I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
VM + DG+SK FGFV F P++A ++V +NG+ K YV AQ+K ER+ L +
Sbjct: 128 CKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ 186
Query: 308 FEQSL 312
+ Q +
Sbjct: 187 YMQRV 191
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 174/275 (63%), Gaps = 20/275 (7%)
Query: 191 MLLNDKQVFVGPFLRKQERESTADKT--RFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
MLL K+VFVG F + +R +T ++ NVYVKN + ++ L+K+F ++G ITS
Sbjct: 1 MLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSC 60
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELKG 306
VM +DGKSK FGFV F +P++A +V+ALN + D + +V +AQKK ER ELK
Sbjct: 61 DVM-TSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKK 119
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
K EQ E K++G+NLYVKNLD+S+ D+ LK+ F FG ITS KVM D NG S+G GF
Sbjct: 120 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGF 179
Query: 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----MR----PPV 418
V F EEA+ A+TEMN KMV SKPLYVALAQRKE+RRA+L +Q+ Q MR P
Sbjct: 180 VCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPG 239
Query: 419 GPRMPMYPPVAPG------LGQQLFYGQGPPIIPP 447
G P P PG + QQ +G GP ++ P
Sbjct: 240 GGLYPQQPQPGPGYYVANPMQQQRNFG-GPQMVRP 273
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 20/190 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV + N L LF + G + S V S +S G+G+V + EA A+
Sbjct: 31 TNVYVKNFGDHYNKESLEKLFAKYGTITSCDVM--TSDGKSKGFGFVAFAEPEEAEAAVQ 88
Query: 100 ELNFTPLNGKPIRIMY------SYRDPTIRKSGAG------------NIFIKNLDKSIDN 141
LN +P+ G +++ S R ++K N+++KNLD+S+D+
Sbjct: 89 ALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDD 148
Query: 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201
+AL F +FGNI S KV TD G+S+G+GFV F+ E A +A+ ++N ++ K ++V
Sbjct: 149 EALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVA 208
Query: 202 PFLRKQERES 211
RK++R +
Sbjct: 209 LAQRKEDRRA 218
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD SV+D L F G + S +V D RS G+G+V + EA
Sbjct: 130 QKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTD-ENGRSKGFGFVCFEKPEEA 188
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T A+ E+N + KP+ + + R
Sbjct: 189 TTAVTEMNSKMVCSKPLYVALAQR 212
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 112/130 (86%), Gaps = 5/130 (3%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
EQ+ E ADKF+G NLY+KNLDDSI DDKLK+LFS+FG+ITSCKVMRDPNGISRGSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMP 423
F+T EEAS+A+ EMNGKMVVSKPL+VALAQRKE+RRARLQAQFSQ+R P V RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 424 MYPPVAPGLG 433
MYPP PG G
Sbjct: 121 MYPPCGPGHG 130
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
+Q ADK + N+Y+KNL ++ +D LK++F +FG ITS VMRD +G S+ GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
F P++A+R++ +NGK K +V AQ+K +R L+ +F Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQ 105
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+++KNLD SID+ L FS FG+I SCKV D G SRG GFV F E A AI +
Sbjct: 14 ANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 188 LNGMLLNDKQVFVGPFLRKQERES 211
+NG ++ K +FV RK++R +
Sbjct: 74 MNGKMVVSKPLFVALAQRKEDRRA 97
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A +F +LY+ +LD S++D +L LF+Q G + S +V RD S G G+V + E
Sbjct: 8 ADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEE 66
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
A+RA+ E+N + KP+ + + R
Sbjct: 67 ASRAILEMNGKMVVSKPLFVALAQR 91
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 147/198 (74%), Gaps = 4/198 (2%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVYVK+ + ++ LK++F ++G ITS VM DGK + FGFV F++P+ A +V+
Sbjct: 6 FTNVYVKDFGDELNDETLKEMFEKYGTITSHRVM-IKDGKGRGFGFVAFENPESAEHAVQ 64
Query: 278 ALNGKKFDD-KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
LNGK+ + K YVG+AQKK ER+MELK +FEQ E +++G+NLYVKNLDDSI D+
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 124
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST-AEEASKALTEMNGKMVVSKPLYVA 395
+L++ FS FGTITS KVM + G S+G GFV FS AEEA+KA+TEMNG++V SKPLYVA
Sbjct: 125 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 396 LAQRKEERRARLQAQFSQ 413
LAQR E+R+A L +Q+ Q
Sbjct: 184 LAQRTEDRKAHLASQYMQ 201
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 16/198 (8%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++K+ ++++ L + F +G I S +V G+ RG+GFV F+N ESA+ A+ +L
Sbjct: 8 NVYVKDFGDELNDETLKEMFEKYGTITSHRVMIKD-GKGRGFGFVAFENPESAEHAVQEL 66
Query: 189 NGMLLND-KQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDL 235
NG L + K ++VG +K ER+ + TR+ N+YVKNL ++ ++ L
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERL 126
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNF-DDPDDAARSVEALNGKKFDDKEWYVGKA 294
+K F FG ITS VM + +G+SK FGFV F ++A ++V +NG+ K YV A
Sbjct: 127 RKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVALA 185
Query: 295 QKKYEREMELKGKFEQSL 312
Q+ +R+ L ++ Q +
Sbjct: 186 QRTEDRKAHLASQYMQRM 203
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 29/194 (14%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV D +ND L ++F + G + S RV + + G+G+V + A A+
Sbjct: 7 TNVYVKDFGDELNDETLKEMFEKYGTITSHRVM--IKDGKGRGFGFVAFENPESAEHAVQ 64
Query: 100 ELNFTPL-NGKPIRIMYSYR--------------------DPTIRKSGAGNIFIKNLDKS 138
ELN L GK I+Y R + R G N+++KNLD S
Sbjct: 65 ELNGKELGEGK---ILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGV-NLYVKNLDDS 120
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE-ESAKSAIDKLNGMLLNDKQ 197
ID++ L FS FG I S KV + G+S+G+GFV F E A A+ ++NG ++ K
Sbjct: 121 IDDERLRKEFSPFGTITSAKVMLEE-GRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKP 179
Query: 198 VFVGPFLRKQERES 211
++V R ++R++
Sbjct: 180 LYVALAQRTEDRKA 193
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+YVK+ D ++D+ LKE+F ++GTITS +VM +G RG GFVAF E A A+ E+
Sbjct: 8 NVYVKDFGDELNDETLKEMFEKYGTITSHRVM-IKDGKGRGFGFVAFENPESAEHAVQEL 66
Query: 383 NGK-MVVSKPLYVALAQRKEERRARLQAQFSQMR 415
NGK + K LYV AQ+K ER+ L+ +F Q++
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQMELKRRFEQLK 100
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYN-AAHEA 94
++ +LYV +LD S++D +L F+ G + S +V L RS G+G+V ++ A EA
Sbjct: 106 RYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVLFSQHAEEA 163
Query: 95 TRALDELNFTPLNGKPIRIMYSYR 118
T+A+ E+N + KP+ + + R
Sbjct: 164 TKAVTEMNGRIVGSKPLYVALAQR 187
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 97/160 (60%), Positives = 120/160 (75%)
Query: 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY 88
G G + SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+
Sbjct: 7 AGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNF 66
Query: 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
+A RALD +NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNKA++DTF
Sbjct: 67 QQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTF 126
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
S FGNILSCKVA D S+GYGFV F+ EESA+ AI+K+
Sbjct: 127 SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 17/161 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RDA +S + +VNF P DA R+++
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N K + +Q+ + S++ + N+++KNLD SI + +
Sbjct: 79 MNFDMMYGKPIRIMWSQR------------DPSMRRSG----AGNIFIKNLDKSIDNKAI 122
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
+ FS FG I SCKV D S+G GFV F T E A KA+
Sbjct: 123 YDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAI 163
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 121 TIRKSGAG--------NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYG 171
T+ +GAG ++++ +L + L + FS+ G +LS +V D++ + S GY
Sbjct: 3 TVATAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYA 62
Query: 172 FVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
+V F A+ A+D +N ++ K + + +R+ + ++ N+++KNL ++
Sbjct: 63 YVNFQQPADAERALDTMNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSID 118
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ F FG I S V D + SK +GFV+F+ + A +++E
Sbjct: 119 NKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIE 164
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEASKAL 379
+LYV +L +++ L E FS G + S +V RD I+R G +V F +A +AL
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADAERAL 76
Query: 380 TEMNGKMVVSKPLYVALAQRKEERR 404
MN M+ KP+ + +QR R
Sbjct: 77 DTMNFDMMYGKPIRIMWSQRDPSMR 101
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 135/196 (68%), Gaps = 3/196 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
SLYVGDL V + L+ F+ +G V+S+R+CRDL TRRSLGY YVN+ +A +ALD
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+NF + GKPIR+M+S RD +RKSG GN+FIKNLDKSIDNK L++ FS FG ILS KV
Sbjct: 62 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 121
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK--TR 217
+D G SRGY FV F N+ +A AI+++NG LL D ++FVG F +++RE+
Sbjct: 122 MSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNE 180
Query: 218 FNNVYVKNLSETTTED 233
F NVYVKN + ++
Sbjct: 181 FTNVYVKNFGDDMDDE 196
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L FS G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+N ++ K + L +R++ K+ NV++KNL ++ L + F FG I
Sbjct: 62 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ VM D G S+ + FV+F + + A R++E +NG D +VG+ + + +RE EL+
Sbjct: 118 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 176
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDD 336
K E N+YVKN D + D+
Sbjct: 177 KVN----------EFTNVYVKNFGDDMDDE 196
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 100/199 (50%), Gaps = 26/199 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV +LS TED L K F G + S + RD +S + +VNF DA ++++
Sbjct: 3 SLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDT 62
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLYVKNLDDSIS 334
+N FD +KGK + + D + G+ N+++KNLD SI
Sbjct: 63 MN---FD-----------------MIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSID 102
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L E FS FG I S KVM D G SRG FV F A +A+ EMNG ++ L+V
Sbjct: 103 NKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFV 161
Query: 395 ALAQRKEERRARLQAQFSQ 413
+ +++R A LQ + ++
Sbjct: 162 GRFKNRKDREAELQNKVNE 180
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/130 (76%), Positives = 109/130 (83%), Gaps = 5/130 (3%)
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
EQ+ E ADKF+G NLY+KNLD SI DDKLK+LFS+FG+ITSCKVMRDPNGISRGSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMP 423
F+T EEAS+A+ EMNGKMVV KPLYVALAQRKE RRARLQAQFSQ+R P V RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 424 MYPPVAPGLG 433
MYPP PG G
Sbjct: 121 MYPPCGPGHG 130
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
+Q ADK + N+Y+KNL + +D LK++F +FG ITS VMRD +G S+ GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
F P++A+R++ +NGK K YV AQ+K R L+ +F Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQ 105
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+++KNLD SID+ L FS FG+I SCKV D G SRG GFV F E A AI +
Sbjct: 14 ANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 188 LNGMLLNDKQVFVGPFLRKQERES 211
+NG ++ K ++V RK+ R +
Sbjct: 74 MNGKMVVGKPLYVALAQRKEVRRA 97
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A +F +LY+ +LD S++D +L LF+Q G + S +V RD S G G+V + E
Sbjct: 8 ADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEE 66
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
A+RA+ E+N + GKP+ + + R R
Sbjct: 67 ASRAILEMNGKMVVGKPLYVALAQRKEVRR 96
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 133/178 (74%), Gaps = 3/178 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG+FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
M D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 114/188 (60%), Gaps = 11/188 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + A +F N+Y+KN + + D++LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+FG S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 404 RARLQAQF 411
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 104/173 (60%), Gaps = 10/173 (5%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN + + + ++ R++ G N++IKN + +D++ L + F FG LS K
Sbjct: 60 LNDRKV-FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 118
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
V TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 171
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF + G +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N LNGK I +
Sbjct: 141 AQKAVDEMNGKELNGKQIYV 160
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 152/231 (65%), Gaps = 17/231 (7%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGF 172
M+S RDP++RKSG GNIF+KNLD SIDNKAL+DTFS FGNILSCKVA D + G S+GYG+
Sbjct: 1 MWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGY 60
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
V ++ E+A AI K+NGML+ +VFVG F ++Q+R D T N YVKN+ T+
Sbjct: 61 VHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRPDADDWT---NCYVKNIPTQWTD 117
Query: 233 DDLKKIFGEFGIITSTAVMRDADG--KSKCFGFVNFDDPDDAARSVEALNGKKFD----- 285
DL K F FG + S VM+D +++ FGFVN++D + A ++V+ALNGK +
Sbjct: 118 ADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGV 177
Query: 286 DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ E YVGKAQK+ ERE EL+ KFEQ K E +N Y N + + D
Sbjct: 178 ETELYVGKAQKRSERERELRNKFEQL------KMERINKYTANARNHPARD 222
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 23/216 (10%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNF 266
+R+ + K+ N++VKNL + L F FG I S V D G SK +G+V++
Sbjct: 4 QRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHY 63
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
+ + A ++ +NG E +VG QK+ +R D + N YV
Sbjct: 64 ETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR---------------PDADDWTNCYV 108
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI--SRGSGFVAFSTAEEASKALTEMNG 384
KN+ +D L + F FG + S VM+D +RG GFV + +E A KA+ +NG
Sbjct: 109 KNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNG 168
Query: 385 KMV-----VSKPLYVALAQRKEERRARLQAQFSQMR 415
K V LYV AQ++ ER L+ +F Q++
Sbjct: 169 KSYPAGEGVETELYVGKAQKRSERERELRNKFEQLK 204
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 105/199 (52%), Gaps = 9/199 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+++ LYD F+ G ++S +V D +T S GYGYV+Y A AT A+ +
Sbjct: 16 NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAATEAIAK 75
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N + G + + + R N ++KN+ + L F FG +LS V
Sbjct: 76 INGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVV 135
Query: 160 ATDSLG--QSRGYGFVQFDNEESAKSAIDKLNGMLLN-----DKQVFVGPFLRKQEREST 212
D+ Q+RG+GFV +++ E+A A+D LNG + +++VG ++ ERE
Sbjct: 136 MKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETELYVGKAQKRSERERE 195
Query: 213 ADKTRFNNVYVKNLSETTT 231
+ +F + ++ +++ T
Sbjct: 196 L-RNKFEQLKMERINKYTA 213
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/374 (35%), Positives = 212/374 (56%), Gaps = 15/374 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR---DLSTRRSLGYGYVNYNAAHEAT 95
+ ++YVGDL L +S LY +F+ +G ++++++ + D + Y YV ++ EA
Sbjct: 15 NCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQEEEAL 74
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+++LNF ++ K +R+M Y I+ GNI IKNL D+K LHDTFS FG IL
Sbjct: 75 EAVNKLNFFKVHDKEMRVML-YDKERIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEIL 133
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA +S G+ +G+GFVQF N+ A+ A+ M ++ + V + K + T +
Sbjct: 134 SCKVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAIKVEKY-EKNYKIKTGSR 192
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NV+ KN TTTE ++K IF G ++S DG + FGF N+++ DA R+
Sbjct: 193 A-FTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQRA 251
Query: 276 VEALNGKK-FDDKE---WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
++ L+GK F+ K +YV +AQ K +R L FE+ L + ++ NLYV L +
Sbjct: 252 IDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEK-LSMSGLNYK-RNLYVTRLPN 309
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKALTEMNGKMVVS 389
+ ++++ELFS+FG + S V +D N ++ + +V FSTA+EAS A+ + N + S
Sbjct: 310 TYGKEEVQELFSQFGKVISVCVGKD-NVVNEDKNWAYVCFSTADEASIAVEKGNEIYIDS 368
Query: 390 KPLYVALAQRKEER 403
+ + + K ER
Sbjct: 369 VKINITYFKSKNER 382
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 27/300 (9%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ----SRGYGFVQFDNE 178
+K +++ +L L+ FST G+I++ K+ ++ + Y +V F E
Sbjct: 11 KKENNCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQE 70
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A A++KLN ++DK++ V L +ER + D+ N+ +KNLS L
Sbjct: 71 EEALEAVNKLNFFKVHDKEMRV--MLYDKERIKSMDR---GNIVIKNLSADCDSKTLHDT 125
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V ++ GK K FGFV F + + A ++++ + D V K +K Y
Sbjct: 126 FSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAIKVEKYEKNY 185
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+ +K + F N++ KN + ++ ++K++F G ++S P+
Sbjct: 186 K------------IKTGSRAF--TNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPD 231
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVS----KPLYVALAQRKEERRARLQAQFSQM 414
G RG GF + A +A +A+ E++GK V +P YV AQ K++R L + F ++
Sbjct: 232 GTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKL 291
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 38/304 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++ + +L + L+D F+ G+++S +V + S + G+G+V + + A +AL
Sbjct: 107 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVALN-SQGKCKGFGFVQFKNKNGARKALKF 165
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG--NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++G I++ ++ I+ N+F KN + + + D F + G + S
Sbjct: 166 GTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFY 225
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----PFLRKQ------- 207
A G RG+GF ++N A+ AID+L+G K VF G PF +Q
Sbjct: 226 FAAKPDGTLRGFGFANYENATDAQRAIDELSG-----KDVFEGKYPEPFYVQQAQTKQQR 280
Query: 208 --------ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKS 258
E+ S + N+YV L T +++++++F +FG + S V +D +
Sbjct: 281 LDSLSSAFEKLSMSGLNYKRNLYVTRLPNTYGKEEVQELFSQFGKVISVCVGKDNVVNED 340
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME----------LKGKF 308
K + +V F D+A+ +VE N D + + + K ERE + LK F
Sbjct: 341 KNWAYVCFSTADEASIAVEKGNEIYIDSVKINITYFKSKNEREQDYINDNMQRYALKTGF 400
Query: 309 EQSL 312
QS+
Sbjct: 401 RQSI 404
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 208 ERESTADKTRFNN---VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA----DGKSKC 260
E+ S +KT+ N VYV +LS E DL KIF G I + +++ A + C
Sbjct: 2 EKASKIEKTKKENNCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTC 61
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+ +V F ++A +V LN K DKE V K+ + M+ +G
Sbjct: 62 YAYVLFSQEEEALEAVNKLNFFKVHDKEMRVMLYDKERIKSMD-RG-------------- 106
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL- 379
N+ +KNL L + FS FG I SCKV + G +G GFV F A KAL
Sbjct: 107 --NIVIKNLSADCDSKTLHDTFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKALK 164
Query: 380 --TEM 382
TEM
Sbjct: 165 FGTEM 169
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR--DLSTRRSLGYGYVNYNAAHEATRA 97
T+++ + L+ + ++ D+F +G+V S D + R G+G+ NY A +A RA
Sbjct: 195 TNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLR---GFGFANYENATDAQRA 251
Query: 98 LDELNFTPL-NGKPIRIMYSYRDPT--------------IRKSGAG---NIFIKNLDKSI 139
+DEL+ + GK Y + T + SG N+++ L +
Sbjct: 252 IDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLNYKRNLYVTRLPNTY 311
Query: 140 DNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+ + + FS FG ++S V D+ + + + + +V F + A A++K N + ++ ++
Sbjct: 312 GKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEIYIDSVKI 371
Query: 199 FVGPFLRKQERE 210
+ F K ERE
Sbjct: 372 NITYFKSKNERE 383
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 211/374 (56%), Gaps = 15/374 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR---DLSTRRSLGYGYVNYNAAHEAT 95
+ ++YVGDL L +S LY +F+ +G ++++++ + D + Y YV ++ EA
Sbjct: 17 NCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQEEEAL 76
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+++LNF ++ K +R+M Y I+ GNI IKNL D+K LHDTFS FG IL
Sbjct: 77 EAVNKLNFFKVHDKEMRVML-YDKERIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEIL 135
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
SCKVA +S G+ +G+GFVQF N+ A+ A+ M ++ + V + K + T +
Sbjct: 136 SCKVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAIKVEKY-EKNYKIKTGSR 194
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NV+ KN TTTE LK+IF G ++S DG + FGF N+++ DA ++
Sbjct: 195 A-FTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQKA 253
Query: 276 VEALNGKK-FDDKE---WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
++ L+GK F+ K +YV +AQ K +R L FE+ L + ++ NLYV L
Sbjct: 254 IDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEK-LSMSGLNYK-RNLYVTRLPS 311
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGIS--RGSGFVAFSTAEEASKALTEMNGKMVVS 389
+ ++++ELFS++G I S V +D N ++ + +V FSTA+EAS A+ + N + S
Sbjct: 312 TYGKEEVEELFSQYGKIISVCVGKD-NVVNEDKNWAYVCFSTADEASIAVEKGNEVYIDS 370
Query: 390 KPLYVALAQRKEER 403
+ V + K ER
Sbjct: 371 VKINVTYFKSKNER 384
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 39/306 (12%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ----SRGYGFVQFDNE 178
+K +++ +L L+ FST G+I++ K+ + + Y +V F E
Sbjct: 13 KKENNCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQE 72
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A A++KLN ++DK++ V L +ER + D+ N+ +KNLS L
Sbjct: 73 EEALEAVNKLNFFKVHDKEMRV--MLYDKERIKSMDR---GNIVIKNLSADCDSKTLHDT 127
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +++ GK K FGFV F + + A +++ K+
Sbjct: 128 FSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKAL--------------------KF 167
Query: 299 EREMELKG------KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
EM++ G K+E++ K N++ KN + ++ +LKE+F G ++S
Sbjct: 168 GTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFY 227
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS----KPLYVALAQRKEERRARLQ 408
P+G RG GF + A +A KA+ E++GK + +P YV AQ K++R L
Sbjct: 228 FATKPDGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLS 287
Query: 409 AQFSQM 414
+ F ++
Sbjct: 288 SAFEKL 293
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 38/304 (12%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++ + +L + L+D F+ G+++S +V ++ S + G+G+V + + A +AL
Sbjct: 109 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQN-SQGKCKGFGFVQFKNKNGARKALKF 167
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAG--NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++G I++ ++ I+ N+F KN + + L + F + G + S
Sbjct: 168 GTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFY 227
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG----PFLRKQ------- 207
AT G RG+GF ++N A+ AID+L+G K +F G PF +Q
Sbjct: 228 FATKPDGGLRGFGFANYENAADAQKAIDELSG-----KDIFEGKYPEPFYVQQAQTKQQR 282
Query: 208 --------ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKS 258
E+ S + N+YV L T +++++++F ++G I S V +D +
Sbjct: 283 LDSLSSAFEKLSMSGLNYKRNLYVTRLPSTYGKEEVEELFSQYGKIISVCVGKDNVVNED 342
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME----------LKGKF 308
K + +V F D+A+ +VE N D + V + K ERE + LK F
Sbjct: 343 KNWAYVCFSTADEASIAVEKGNEVYIDSVKINVTYFKSKNEREQDYINDNMQRYALKTGF 402
Query: 309 EQSL 312
QS+
Sbjct: 403 RQSI 406
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 208 ERESTADKTRFNN---VYVKNLSETTTEDDLKKIFGEFGIITSTA----VMRDADGKSKC 260
E+ S +KT+ N VYV +LS T E DL KIF G I + VM + + C
Sbjct: 4 EKASKIEKTKKENNCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTC 63
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+ +V F ++A +V LN K DKE V K+ + M+ +G
Sbjct: 64 YAYVLFSQEEEALEAVNKLNFFKVHDKEMRVMLYDKERIKSMD-RG-------------- 108
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL- 379
N+ +KNL L + FS FG I SCKV ++ G +G GFV F A KAL
Sbjct: 109 --NIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKALK 166
Query: 380 --TEM 382
TEM
Sbjct: 167 FGTEM 171
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 132/178 (74%), Gaps = 3/178 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
M D GKSK FGFV+F+ +DA ++V+ +NGK+ + K YVG+AQKK ER+ ELK KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTELKRKF 177
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 112/188 (59%), Gaps = 11/188 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + A +F N+Y+KN + + D++LKE+F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEVFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
++G S KVM D +G S+G GFV+F E+A KA+ MNGK + K +YV AQ+K ER
Sbjct: 110 KYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVER 169
Query: 404 RARLQAQF 411
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D + S GYG+V + A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN + + + ++ R++ G N++IKN + +D++ L + F +G LS K
Sbjct: 60 LNDRKV-FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVK 118
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
V TD G+S+G+GFV F+ E A+ A+D +NG LN K ++VG +K ER++
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQT 171
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 131/178 (73%), Gaps = 3/178 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK +FG+FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
M D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ E K KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEXKRKF 177
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 11/188 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + A +F N+Y+KN + + D++LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+FG S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 404 RARLQAQF 411
+ + +F
Sbjct: 170 QTEXKRKF 177
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 107/180 (59%), Gaps = 11/180 (6%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN + + + ++ R++ G N++IKN + +D++ L D F FG LS K
Sbjct: 60 LNDRKV-FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 118
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
V TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER+ T K +F
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ-TEXKRKF 177
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L DLF + G +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N LNGK I +
Sbjct: 141 AQKAVDEMNGKELNGKQIYV 160
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/127 (76%), Positives = 109/127 (85%), Gaps = 6/127 (4%)
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
ISD+KLKELFS +GTITSCKVMRDP+G+S+GSGFVAFS EEAS+AL+EMNGKMVVSKPL
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 393 YVALAQRKEERRARLQAQFSQMRP-----PVGPRMPMYPPVAPGLGQQLFYGQG-PPIIP 446
YVALAQRKEERRARLQAQFSQMRP V PRMPMYPP PGLGQQ+FYGQ P ++P
Sbjct: 61 YVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLP 120
Query: 447 PQVIYSF 453
PQ + +
Sbjct: 121 PQAGFGY 127
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
+++ LK++F +G ITS VMRD G SK GFV F +P++A+R++ +NGK K Y
Sbjct: 2 SDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLY 61
Query: 291 VGKAQKKYEREMELKGKFEQ 310
V AQ+K ER L+ +F Q
Sbjct: 62 VALAQRKEERRARLQAQFSQ 81
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
I ++ L + FS +G I SCKV D G S+G GFV F N E A A+ ++NG ++ K +
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 199 FVGPFLRKQERES 211
+V RK+ER +
Sbjct: 61 YVALAQRKEERRA 73
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
++D +L +LF+ G + S +V RD S S G G+V ++ EA+RAL E+N + KP
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGV-SKGSGFVAFSNPEEASRALSEMNGKMVVSKP 59
Query: 111 IRIMYSYR 118
+ + + R
Sbjct: 60 LYVALAQR 67
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 137/188 (72%), Gaps = 1/188 (0%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+G I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFVQFD+EE+A++AI+
Sbjct: 127 SGKIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIE 186
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
K+NG+L N ++V V ++ +++RE T+F N+YVKN +E +E ++K++F +G IT
Sbjct: 187 KVNGILCNSQKVHVVKYIPRRDREQE-KATQFRNLYVKNFNEDFSEQNMKEMFEPYGRIT 245
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S +M D +G+SK FGFV F++P A +V ALNGK+ DK YV +A K ER+ E+
Sbjct: 246 SHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
Query: 307 KFEQSLKE 314
K E+ ++
Sbjct: 306 KLEERKRQ 313
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 13/195 (6%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D G S+ +GFV FD + A ++E +N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G + ++ +V K + +RE E +F NLYVKN ++ S+ +KE
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQFR-------------NLYVKNFNEDFSEQNMKE 236
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
+F +G ITS K+M D G S+ GFVAF + A A+ +NGK + K LYVA A K
Sbjct: 237 MFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
Query: 401 EERRARLQAQFSQMR 415
ER+ + + + +
Sbjct: 297 IERQQEINRKLEERK 311
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 101/180 (56%), Gaps = 4/180 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S +Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V +++ A A+
Sbjct: 127 SGKIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKD-EHGNSRGYGFVQFDSEEAARAAI 185
Query: 99 DELNFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+++N N + + ++ RD K+ N+++KN ++ + + + F +G I
Sbjct: 186 EKVNGILCNSQKVHVVKYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMFEPYGRIT 245
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S K+ TD G+S+ +GFV F+N +SA +A+ LNG L DK ++V L K ER+ ++
Sbjct: 246 SHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 129/177 (72%), Gaps = 3/177 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+D FS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
M D GKSK FGFV+F+ +DA ++V +NGK+ + K+ YVG+AQKK ER+ ELK K
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELKRK 176
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + A +F N+Y+KN + + D++LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
FG S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVER 169
Query: 404 RARLQ 408
+ L+
Sbjct: 170 QTELK 174
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDXFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN + + + ++ R++ G N++IKN + +D++ L + F FG LS K
Sbjct: 60 LNDRKV-FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVK 118
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
V TD G+S+G+GFV F+ E A+ A+ ++NG LN KQ++VG +K ER++
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQT 171
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 387 VVSKPLYVALAQRKEERRARLQAQ 410
+ + ++V + ++ER A L A+
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR 83
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF G +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+ E+N LNGK I +
Sbjct: 141 AQKAVXEMNGKELNGKQIYV 160
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 213/387 (55%), Gaps = 28/387 (7%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ ++YVGDL +S L+ +F+ +G+VV +++ + + S + +V + A RA
Sbjct: 10 IFATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLSS--FAFVTFANGDAADRA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ E N LN K IR++ + + R+ N+ +KNL S N+ L+DTFS FG I+S
Sbjct: 68 IKEYNNFRLNKKNIRVLPCMDEKSKREDA--NLIVKNLPSSFTNENLYDTFSVFGTIISA 125
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF----LRKQERESTA 213
K+AT + G+ + YGFVQFD ++SAK AI +G L++K + V F RKQE ++
Sbjct: 126 KIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQEEQALE 185
Query: 214 DK-----TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV-MRDADGKSKCFGFVNFD 267
+K +F N ++KN E+ TE DL+ + ++G ITS ++D SK F F NF+
Sbjct: 186 NKPVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFE 245
Query: 268 DPDDAARSVEALNGKK---FDDKEW-------YVGKAQKKYEREMELKGKFEQ-SLKETA 316
+ A +++ L+GK+ F++ + Y+ KAQKK ERE LK FEQ SL+
Sbjct: 246 SHESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQN 305
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
K NLY+ N+ I D + E+FSEFG+I S + D R +V +ST++EA
Sbjct: 306 IK---RNLYITNIPAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAF 362
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEER 403
A+ + N + + L V + K ER
Sbjct: 363 IAIEKGNELFIDNNKLNVTYFKNKAER 389
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 144/300 (48%), Gaps = 25/300 (8%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
I++ +L L FS+ G ++ K+ + + FV F N ++A AI +
Sbjct: 12 ATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKK-RIEPLSSFAFVTFANGDAADRAIKE 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
N LN K + V P + ++ + A N+ VKNL + T ++L F FG I S
Sbjct: 71 YNNFRLNKKNIRVLPCMDEKSKREDA------NLIVKNLPSSFTNENLYDTFSVFGTIIS 124
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ ADGK K +GFV FD A +++ +G K D+K V K+ R+ E
Sbjct: 125 AKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQE---- 180
Query: 308 FEQSLKETADKFEG--LNLYVKNLDDSISDDKLKELFSEFGTITSCKV-MRDPNGISRGS 364
EQ+L+ K E N ++KN +S ++ L+ L +++G ITS ++D +S+G
Sbjct: 181 -EQALENKPVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGF 239
Query: 365 GFVAFSTAEEASKALTEMNGKMVVS----------KPLYVALAQRKEERRARLQAQFSQM 414
F F + E A A+ E++GK + +P Y+ AQ+KEER L+ F Q+
Sbjct: 240 AFANFESHESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQL 299
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 134/302 (44%), Gaps = 45/302 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L V +L S + LYD F+ G ++S ++ + + YG+V ++ A A+
Sbjct: 97 NLIVKNLPSSFTNENLYDTFSVFGTIISAKIAT-YADGKPKNYGFVQFDKKKSAKMAIKH 155
Query: 101 LNFTPLNGKPIRIMYSYRD-------------PTIRKSGAGNIFIKNLDKSIDNKALHDT 147
+ L+ K I++ ++ P + N FIKN +S K L
Sbjct: 156 CDGGKLDNKIIQVEIFDKEKRRKQEEQALENKPVKLEPKFTNCFIKNFPESFTEKDLESL 215
Query: 148 FSTFGNILSCKV-ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF------- 199
+ +GNI S D S+G+ F F++ ESA++AI +L+G KQ+F
Sbjct: 216 LNKYGNITSIYFPLKDGTFVSKGFAFANFESHESAQNAIQELHG-----KQIFPFEENSY 270
Query: 200 ---VGPFL-----RKQERE----------STADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
+ PF +K+ERE S + N+Y+ N+ +DD+ +IF E
Sbjct: 271 TTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQNIKRNLYITNIPAFIEKDDIFEIFSE 330
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
FG I S ++ DA + + + +V + D+A ++E N D+ + V + K ER
Sbjct: 331 FGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIEKGNELFIDNNKLNVTYFKNKAERT 390
Query: 302 ME 303
E
Sbjct: 391 KE 392
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F +YV +LS T E DL +IF G + + + + S F FV F + D A R+++
Sbjct: 11 FATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAFVTFANGDAADRAIK 69
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
N + + K V L E+S +E A NL VKNL S +++
Sbjct: 70 EYNNFRLNKKNIRV------------LPCMDEKSKREDA------NLIVKNLPSSFTNEN 111
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L + FS FGTI S K+ +G + GFV F + A A+ +G + +K + V +
Sbjct: 112 LYDTFSVFGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIF 171
Query: 398 QRKEERRARLQA 409
+++ R+ QA
Sbjct: 172 DKEKRRKQEEQA 183
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 131/191 (68%), Gaps = 3/191 (1%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
MRDA+G S+CFGFVNF+ + A +V+ LNGK D YV +AQKK ER+ ELK KFE
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 60
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+ +K + +NLY+KNLDD I+D+ L++LF FG + SCKVM D +G S+G GFV+F+
Sbjct: 61 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 120
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAP 430
T E+A+ A+ +MNGKMV KPLYVA+AQRKEER+A L A F+++R + P +AP
Sbjct: 121 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTLGPNIAP 180
Query: 431 GLGQQLFYGQG 441
Q +G G
Sbjct: 181 ---HQFNFGHG 188
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 12/159 (7%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-------- 213
D+ G SR +GFV F+ E A++A+ LNG + D ++V +K ER++
Sbjct: 3 DANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDK 62
Query: 214 ----DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
+K + N+Y+KNL + ++ L+K+F FG + S VM D+ G+SK GFV+F
Sbjct: 63 NQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATV 122
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+DA ++ +NGK K YV AQ+K ER+ L F
Sbjct: 123 EDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 161
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 26/153 (16%)
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY---------------------R 118
S +G+VN+ + A A+ LN GK I M Y +
Sbjct: 8 SRCFGFVNFEKSECARNAVKNLN-----GKSIGDMVLYVARAQKKSERQAELKAKFEHDK 62
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
+ K N+++KNLD I+++ L F FG + SCKV DS G+S+G GFV F
Sbjct: 63 NQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATV 122
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
E A +AI K+NG ++ K ++V RK+ER++
Sbjct: 123 EDANNAILKMNGKMVGKKPLYVAVAQRKEERKA 155
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +LY+ +LD +ND L LF G+V S +V D S RS G G+V++ +A A+
Sbjct: 71 TVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLD-SHGRSKGCGFVSFATVEDANNAI 129
Query: 99 DELNFTPLNGKPIRIMYSYR 118
++N + KP+ + + R
Sbjct: 130 LKMNGKMVGKKPLYVAVAQR 149
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSLYVGDL V + LY+ F+ G V+S+RVCR L TRRSLGY YV++ +A AL+
Sbjct: 15 TSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALN 74
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N+ + G+PIRI + RDP+ RKSG GN+FIKNLDKSIDNKAL+DTFS FGNILSCK+
Sbjct: 75 TMNYDTIKGQPIRITWYQRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKI 134
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
D G RGYGFV F+ EESA AI+++NG +L+ K+V
Sbjct: 135 VCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKKV 172
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVE 277
++YV +L TED L + F G + S V R +S + +V+F +DA ++
Sbjct: 15 TSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALN 74
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDD 336
+N + + Q+ + + + G+ N+++KNLD SI +
Sbjct: 75 TMNYDTIKGQPIRITWYQR-----------------DPSPRKSGVGNVFIKNLDKSIDNK 117
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
L + FS FG I SCK++ D +G RG GFV F E A+ A+ +NG M+ K
Sbjct: 118 ALYDTFSAFGNILSCKIVCDEHGF-RGYGFVHFEKEESATIAIERVNGTMLHGK 170
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FST G +LS +V + S GY +V F + E A++A++
Sbjct: 16 SLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALNT 75
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + + + + + +R+ + K+ NV++KNL ++ L F FG I S
Sbjct: 76 MNYDTIKGQPIRITWY----QRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 131
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
++ D G + +GFV+F+ + A ++E +NG K+
Sbjct: 132 CKIVCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKK 171
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 137/191 (71%), Gaps = 2/191 (1%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
+G I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+
Sbjct: 101 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 160
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
K+NGML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G IT
Sbjct: 161 KVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 219
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELK 305
S +M D +G+S+ FGFV F++P A +V L+GK+ D+K YV +A K ER+ E+
Sbjct: 220 SHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 279
Query: 306 GKFEQSLKETA 316
K E+ ++ A
Sbjct: 280 RKLEERKRQKA 290
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 164 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 210
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + A A+ ++GK + +K LYVA A
Sbjct: 211 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 270
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 271 KAERQQEINRKLEERK 286
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S +Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A+
Sbjct: 101 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAI 159
Query: 99 DELNFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+++N N + + ++ RD K+ N+++KNL + + L + F +G I
Sbjct: 160 EKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 219
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTAD 214
S K+ D G+SR +GFV F+N +SA +A+ L+G L D K ++V L K ER+ +
Sbjct: 220 SHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 279
Query: 215 K 215
+
Sbjct: 280 R 280
>gi|147864210|emb|CAN80948.1| hypothetical protein VITISV_016699 [Vitis vinifera]
Length = 183
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/137 (67%), Positives = 106/137 (77%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G Q STSLYVG L+ +V DS L+DLF Q+G VVSV++C DLSTRRSL YG VN+
Sbjct: 10 GGENQLXSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNP 69
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+ RALD LNFT LNGKP RIMYS+ DP++RKSG GNIFIKNLDK +D+KALHDTFS F
Sbjct: 70 QDTARALDVLNFTLLNGKPTRIMYSHCDPSVRKSGTGNIFIKNLDKRVDHKALHDTFSAF 129
Query: 152 GNILSCKVATDSLGQSR 168
GNILSCKVA D+ G R
Sbjct: 130 GNILSCKVAADASGSYR 146
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV L T+ L +FG+ G + S + D + +S +G VN +P D AR+++ L
Sbjct: 20 LYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALDVL 79
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + K + + + S++++ N+++KNLD + L
Sbjct: 80 NFTLLNGKPTRI------------MYSHCDPSVRKSGTG----NIFIKNLDKRVDHKALH 123
Query: 340 ELFSEFGTITSCKVMRDPNGISR 362
+ FS FG I SCKV D +G R
Sbjct: 124 DTFSAFGNILSCKVAADASGSYR 146
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188
+++ L+ ++ + L D F G ++S ++ D S +S YG V N + A+D L
Sbjct: 20 LYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALDVL 79
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N LLN K + + + K+ N+++KNL + L F FG I S
Sbjct: 80 NFTLLNGKPTRI----MYSHCDPSVRKSGTGNIFIKNLDKRVDHKALHDTFSAFGNILSC 135
Query: 249 AVMRDADG 256
V DA G
Sbjct: 136 KVAADASG 143
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 128/175 (73%), Gaps = 3/175 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
M D GKSK FGFV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 174
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + A +F N+Y+KN + + D++LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
S KVM D +G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER
Sbjct: 110 XXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 404 RARLQ 408
+ L+
Sbjct: 170 QTELK 174
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 102/173 (58%), Gaps = 10/173 (5%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN + + + ++ R++ G N++IKN + +D++ L + F LS K
Sbjct: 60 LNDRKV-FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVK 118
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
V TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 171
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 387 VVSKPLYVALAQRKEERRARLQAQ 410
+ + ++V + ++ER A L A+
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR 83
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+DE+N LNGK I +
Sbjct: 141 AQKAVDEMNGKELNGKQIYV 160
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 114/150 (76%), Gaps = 1/150 (0%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YVNY +A RAL+
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++ FS FGNILSCKVA
Sbjct: 61 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 120
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
D G +GYGFV F +ESA+ AID +NG
Sbjct: 121 CDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I S
Sbjct: 61 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 116
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
V D G K +GFV+F + A R+++A+NG
Sbjct: 117 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 61 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 104
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
+FS FG I SCKV D G +G GFV F E A +A+ MNG
Sbjct: 105 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/175 (55%), Positives = 127/175 (72%), Gaps = 3/175 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSJDNKAL+D FS FGNILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGML
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN E ++ LK++FG FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
M D GKSK FGFV+F+ +DA ++V +NGK+ + K+ YV +AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELK 174
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 109/185 (58%), Gaps = 11/185 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +NG
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE L + A +F N+Y+KN + + D++LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
FG S KVM D +G S+G GFV+F E+A KA+ EMNGK K +YV AQ+K ER
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVER 169
Query: 404 RARLQ 408
+ L+
Sbjct: 170 QTELK 174
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 10/173 (5%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA++++N
Sbjct: 2 NLDKSJDNKALYDXFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 106 LNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN + + + ++ R++ G N++IKN + +D++ L + F FG LS K
Sbjct: 60 LNDRKV-FVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVK 118
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
V TD G+S+G+GFV F+ E A+ A+ ++NG N KQ++V +K ER++
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQT 171
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNLD SJ + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +MNG +
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 387 VVSKPLYVALAQRKEERRARLQAQ 410
+ + ++V + ++ER A L A+
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGAR 83
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A++F T++Y+ + ++D +L +LF G +SV+V D S +S G+G+V++ +
Sbjct: 84 AKEF--TNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESG-KSKGFGFVSFERHED 140
Query: 94 ATRALDELNFTPLNGKPIRI 113
A +A+ E+N NGK I +
Sbjct: 141 AQKAVXEMNGKEXNGKQIYV 160
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/377 (33%), Positives = 201/377 (53%), Gaps = 22/377 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S ++YVGDL DS L+ +F+ +G+++++++ + + S + +V + +A +A+
Sbjct: 13 SLTIYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAV 70
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E L+ + IR+M P GNIF+KNL +S +K L D FS FG I+SCK
Sbjct: 71 REYKHYELHDRQIRVMRKDERPP----ETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCK 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAI---DKLNGMLLNDKQVFV---GPFLRKQEREST 212
VAT G+S+GYGFVQF + SAK I + LNG++L ++ V P ++K E +
Sbjct: 127 VATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKV 186
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ T F N ++KN + E +L + ++G +TS DGK K F F NF+ + A
Sbjct: 187 S--TMFTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESA 244
Query: 273 ARSVEALNGK-KFDD-----KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
++ L+G FD+ + +Y+ K QK+ ER L+ FEQ L ++ NLY+
Sbjct: 245 LNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQ-LSMQGQNYKK-NLYI 302
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
N+ + ++L +F EFG+ITS V D + ++ +ST EEAS A+ N
Sbjct: 303 TNIPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIY 362
Query: 387 VVSKPLYVALAQRKEER 403
+ L VA + K ER
Sbjct: 363 LDGNRLQVAYFKNKLER 379
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 142/301 (47%), Gaps = 31/301 (10%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSR-GYGFVQFDNEESAK 182
KS + I++ +L + L FS G IL+ K+ G+S + FV F+NEE A+
Sbjct: 10 KSDSLTIYVGDLPPKTIDSDLFRIFSNVGKILNIKLI--KRGESAPSFAFVTFENEEDAE 67
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
A+ + L+D+Q+ V +RK ER N++VKNL E+ T DL F F
Sbjct: 68 KAVREYKHYELHDRQIRV---MRKDERPPET-----GNIFVKNLPESFTSKDLDDAFSMF 119
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA---LNGKKFDDKEWYVGKAQKKYE 299
G I S V GKSK +GFV F + A + ++ LNG + V + Y
Sbjct: 120 GEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVV----ELYN 175
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
EM+ KG+ K+ + F N ++KN S+ + +L +L ++G +TS +G
Sbjct: 176 PEMK-KGE----SKKVSTMF--TNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDG 228
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVV------SKPLYVALAQRKEERRARLQAQFSQ 413
+G F F T E A A+ ++G +P Y+ Q++EER L+ F Q
Sbjct: 229 KPKGFAFANFETHESALNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQ 288
Query: 414 M 414
+
Sbjct: 289 L 289
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 134/297 (45%), Gaps = 29/297 (9%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
D R + +++V +L S L D F+ G++VS +V +S GYG+V +
Sbjct: 89 DERPPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVA-TTPQGKSKGYGFVQFKEKR 147
Query: 93 EATRALDELNFTPLNGKPI---RIMYSYRDPTIRKSGA-------GNIFIKNLDKSIDNK 142
A + + NF LNG + +I+ +P ++K + N FIKN S+ K
Sbjct: 148 SAKKVIK--NFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTMFTNCFIKNFPGSVGEK 205
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG- 201
L D +G + S T G+ +G+ F F+ ESA +AI+ L+G D G
Sbjct: 206 ELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALNAINGLHGTFPFDNGKDGGE 265
Query: 202 PFL--RKQERESTADKTRF-------------NNVYVKNLSETTTEDDLKKIFGEFGIIT 246
PF + Q+RE A+ R N+Y+ N+ E ++L IF EFG IT
Sbjct: 266 PFYIQKGQKREERAEVLRKMFEQLSMQGQNYKKNLYITNIPEGFGAEELSNIFKEFGSIT 325
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
S +V D K + ++ + P++A+ +VE N D V + K ER E
Sbjct: 326 SMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 382
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
ES K+ +YV +L T + DL +IF G I + +++ + + F FV F++
Sbjct: 5 ESKRAKSDSLTIYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGES-APSFAFVTFENE 63
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+DA ++V + D++ V +K ER E N++VKNL
Sbjct: 64 EDAEKAVREYKHYELHDRQIRV---MRKDERPPETG-----------------NIFVKNL 103
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL---TEMNGKM 386
+S + L + FS FG I SCKV P G S+G GFV F A K + +NG M
Sbjct: 104 PESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLM 163
Query: 387 VVSKPLYVAL 396
+ + V L
Sbjct: 164 LGGNKIVVEL 173
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA+++TFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV F++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 287
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 288 EERKRQKA 295
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + + F FG I + V +D +G S+ +GFV+FD + A ++E +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 215
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + A A+ ++GK + +K LYVA A
Sbjct: 216 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALS 275
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 276 KAERQQEINRKLEERK 291
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +Y+ F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKD-EEGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 102 NFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 168 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV F+N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 285
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV +++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 102 NFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV ++N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 134/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV F+ P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 283
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 284 EERKRQKA 291
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 211
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + + A A+ ++GK + +K LYVA A
Sbjct: 212 MFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 271
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 272 KAERQQEINRKLEERK 287
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 163
Query: 102 NFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 164 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV F++ +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 281
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 134/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV F+ P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 286
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 287 EERKRQKA 294
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 214
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + + A A+ ++GK + +K LYVA A
Sbjct: 215 MFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 274
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 275 KAERQQEINRKLEERK 290
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 166
Query: 102 NFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 167 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV F++ +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 284
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV +++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 102 NFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV ++N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV +++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +YD F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 102 NFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV ++N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I+IKNL++SIDNKA+++TFS FGNIL+C VA D G SRGYGFV FD+EE+A++AI+K+N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
GML N+++V V F+ +++RE T F N+YVKNLSE TE L+++F +G ITS
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYVGKAQKKYEREMELKGKF 308
+M D +G+S+ FGFV F++P A +V L+GK+ D+K YV +A K ER+ E+ K
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINRKL 290
Query: 309 EQSLKETA 316
E+ ++ A
Sbjct: 291 EERKRQKA 298
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + + F FG I + V +D +G S+ +GFV+FD + A ++E +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 218
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVAF + A A+ ++GK + +K LYVA A
Sbjct: 219 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 278
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 279 KNERQQEINRKLEERK 294
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+Y+ +L+ S+++ +Y+ F+ G +++ V +D S GYG+V++++ A A++++
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKD-EEGNSRGYGFVHFDSEEAARAAIEKV 170
Query: 102 NFTPLNGKPIRIM--YSYRDPTIRKSGA-GNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N N + + ++ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 171 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND-KQVFVGPFLRKQERESTADK 215
+ D G+SR +GFV F+N +SA +A+ L+G L D K ++V L K ER+ ++
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINR 288
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/178 (54%), Positives = 129/178 (72%), Gaps = 3/178 (1%)
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNLDKSIDNKAL+DTFS FGNILSCKV D G S+GY FV F+ +++A AI+K+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 193 LNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++VFVG F ++ERE+ A F NVY+KN + ++ LK++F ++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
M D+ GKSK FGFV+F+ +DA ++VE +NGK + K +VG+AQKK ER+ ELK KF
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 114/188 (60%), Gaps = 11/188 (5%)
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL ++ L F FG I S V+ D +G SK + FV+F+ D A R++E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343
+D++ +VG+ + + ERE EL + + E N+Y+KN D + D++LKE+FS
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGDDMDDERLKEMFS 109
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
++G S KVM D G S+G GFV+F E+A+KA+ EMNGK V K ++V AQ+K ER
Sbjct: 110 KYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVER 169
Query: 404 RARLQAQF 411
+A L+ +F
Sbjct: 170 QAELKRKF 177
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 10/173 (5%)
Query: 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105
+LD S+++ LYD F+ G ++S +V D + S GY +V++ A RA++++N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 106 LNGKPIRIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN + + + ++ R++ G N++IKN +D++ L + FS +G LS K
Sbjct: 60 LNDRKV-FVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVK 118
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
V TDS G+S+G+GFV F+ E A A++++NG +N K VFVG +K ER++
Sbjct: 119 VMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQA 171
>gi|162605986|ref|XP_001713508.1| polyadenylate-binding protein [Guillardia theta]
gi|13794428|gb|AAK39803.1|AF165818_11 polyadenylate-binding protein [Guillardia theta]
Length = 389
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 156/260 (60%), Gaps = 4/260 (1%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVGDL++S+ D L +F + ++ +R+C+D+ + SLGY YV +N+ A +AL+++
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 102 NF---TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
NF T L PIRIM+ + +IRKSG GN+FIKNL + K LH FS +G ILS K
Sbjct: 66 NFYSDTELFKTPIRIMWKNNNNSIRKSGYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ D+ G S GYGFV + + A SAI+ LNG L+++K + V FL K +RE + F
Sbjct: 126 IKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLNKSQRERISSCDLF 185
Query: 219 NNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
N+YVKNL + +E + +FG FG ITS + + K F ++NF++ +DA ++
Sbjct: 186 TNIYVKNLPVDKLSEKVIFNLFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAII 245
Query: 278 ALNGKKFDDKEWYVGKAQKK 297
+N +K K V KA K
Sbjct: 246 TMNNRKIAGKSLIVCKAINK 265
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 16/238 (6%)
Query: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYV 223
G S GY +V F++ SAK A++ +N +D ++F P + + ++ K+ + N+++
Sbjct: 42 GNSLGYSYVYFNSYSSAKKALNDMN--FYSDTELFKTPIRIMWKNNNNSIRKSGYGNLFI 99
Query: 224 KNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283
KNL + DL +F E+G I S+ + D +G S +GFV++ + DA ++ LNGK
Sbjct: 100 KNLPYNFSPKDLHSLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKL 159
Query: 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD-DSISDDKLKELF 342
+K V K +RE + D F N+YVKNL D +S+ + LF
Sbjct: 160 ISNKMITVKHFLNKSQRERI----------SSCDLFT--NIYVKNLPVDKLSEKVIFNLF 207
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FG ITS + N I +G ++ F E+A +A+ MN + + K L V A K
Sbjct: 208 GVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIVCKAINK 265
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 94/183 (51%), Gaps = 8/183 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++ +L + + L+ LF++ G+++S ++ D + SLGYG+V+Y +A A++
Sbjct: 96 NLFIKNLPYNFSPKDLHSLFSEYGEILSSKIKYD-NEGSSLGYGFVHYKEMKDAISAINN 154
Query: 101 LNFTPLNGKPIRIMY----SYRDPTIRKSGAGNIFIKNL--DKSIDNKALHDTFSTFGNI 154
LN ++ K I + + S R+ NI++KNL DK + K + + F FG I
Sbjct: 155 LNGKLISNKMITVKHFLNKSQRERISSCDLFTNIYVKNLPVDK-LSEKVIFNLFGVFGKI 213
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S + +G+ ++ F+N E A+ AI +N + K + V + K + ++
Sbjct: 214 TSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIVCKAINKIKIDTINK 273
Query: 215 KTR 217
K+R
Sbjct: 274 KSR 276
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 14/184 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+YV +L+ + + DL++IF + I+ + +D G S + +V F+ A +++ +
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N + D E + + ++ S++++ NL++KNL + S L
Sbjct: 66 NF--YSDTELFKTPIRIMWKNN-------NNSIRKSGYG----NLFIKNLPYNFSPKDLH 112
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
LFSE+G I S K+ D G S G GFV + ++A A+ +NGK++ +K + V
Sbjct: 113 SLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLN 172
Query: 400 KEER 403
K +R
Sbjct: 173 KSQR 176
>gi|387594015|gb|EIJ89039.1| hypothetical protein NEQG_00858 [Nematocida parisii ERTm3]
gi|387595783|gb|EIJ93406.1| hypothetical protein NEPG_01748 [Nematocida parisii ERTm1]
Length = 512
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNYNAAHEATRALD 99
++YVGD+ ++ +S+L+ +F+++GQ+ ++ + R ++S + Y YV + A++
Sbjct: 20 TIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDESSVPIAIE 79
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
NF L+G IR+M + ++ + GNI IKNL K DN+ L+DTF FG ILSCKV
Sbjct: 80 TFNFYSLHGSQIRVM-PFNKESVVGNREGNIVIKNLPKETDNQTLYDTFIVFGPILSCKV 138
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL----RKQERESTADK 215
++L + G G++Q+ + + A+ AI +N ++LN K++ + R+++RE+ A
Sbjct: 139 VKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKLCATQCIPNDKREKKRENVAK- 197
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F N+YVKN TE++++ E+G +TS R G+ + F F N+ + AA +
Sbjct: 198 -IFTNIYVKNFPAGITEEEIEAKLKEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAAAA 256
Query: 276 VEALNGKKF-----DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
+EAL+ K F + YV +A+ K ER E+ F Q + + N+Y+ NL
Sbjct: 257 IEALHDKPFPGYPEGTENLYVQRAKLKNERVEEMLEYFSQVPEHERRR----NIYITNLP 312
Query: 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
++++ + + FS++G I + K+ D +R G+V + AE+A+KA+ N +
Sbjct: 313 GELNEEDVVKYFSKYGPIVTYKLGTDAKN-NRSYGYVFYQKAEDAAKAVELANKSEYCEQ 371
Query: 391 PLYVALAQRKEERR 404
L VA + K+ R
Sbjct: 372 TLDVAFFKCKKLRE 385
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 127/281 (45%), Gaps = 21/281 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++ + +L ++ LYD F G ++S +V ++ + G GY+ Y A A+
Sbjct: 108 NIVIKNLPKETDNQTLYDTFIVFGPILSCKVVKN-NLSECTGVGYIQYKDPKVAEVAIQM 166
Query: 101 LNFTPLNGKPI---RIMYSYRDPTIRKSGA---GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNGK + + + + + R++ A NI++KN I + + +G +
Sbjct: 167 INKIVLNGKKLCATQCIPNDKREKKRENVAKIFTNIYVKNFPAGITEEEIEAKLKEYGEL 226
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN-----GMLLNDKQVFVGPFLRKQER 209
S G+ RG+ F + E A +AI+ L+ G + ++V K ER
Sbjct: 227 TSFLAPRTDSGEMRGFAFANYQTHEMAAAAIEALHDKPFPGYPEGTENLYVQRAKLKNER 286
Query: 210 --------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
+ R N+Y+ NL E+D+ K F ++G I + + DA ++ +
Sbjct: 287 VEEMLEYFSQVPEHERRRNIYITNLPGELNEEDVVKYFSKYGPIVTYKLGTDAKN-NRSY 345
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+V + +DAA++VE N ++ ++ V + K RE+
Sbjct: 346 GYVFYQKAEDAAKAVELANKSEYCEQTLDVAFFKCKKLREL 386
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 24/215 (11%)
Query: 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG--KSKCFG 262
+K+++E K N +YV ++ TTE +L +IF + G I + +++R K KC+
Sbjct: 7 QKEKKEGQIGKQ--NTIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYA 64
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
+V F D ++E N + V K + EG
Sbjct: 65 YVTFFDESSVPIAIETFNFYSLHGSQIRVMPFNK----------------ESVVGNREG- 107
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+ +KNL + L + F FG I SCKV+++ G G++ + + A A+ +
Sbjct: 108 NIVIKNLPKETDNQTLYDTFIVFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVAIQMI 167
Query: 383 NGKMVVSKPLYVALA---QRKEERRARLQAQFSQM 414
N ++ K L ++E++R + F+ +
Sbjct: 168 NKIVLNGKKLCATQCIPNDKREKKRENVAKIFTNI 202
>gi|296081049|emb|CBI18330.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 186 bits (473), Expect = 2e-44, Method: Composition-based stats.
Identities = 93/143 (65%), Positives = 108/143 (75%), Gaps = 3/143 (2%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
+NGG Q VSTSLYVG L+ +V DS L+DLF Q+G VVSV++C DLSTRRSL YG V
Sbjct: 5 SNGG---ENQLVSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCV 61
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
N+ + RALD LNFT LNGKP RIMYS+ DP++RKSG NIFIKNLDK +D+KAL D
Sbjct: 62 NHGNPQDTVRALDVLNFTHLNGKPTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRD 121
Query: 147 TFSTFGNILSCKVATDSLGQSRG 169
TFSTFGNI SCKVA D+ G G
Sbjct: 122 TFSTFGNIFSCKVAADASGSYSG 144
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEA 278
++YV L T+ L +FG+ G + S + D + +S +G VN +P D R+++
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + K + + + S++++ + N+++KNLD + L
Sbjct: 76 LNFTHLNGKPTRI------------MYSHCDPSVRKSGTR----NIFIKNLDKRVDHKAL 119
Query: 339 KELFSEFGTITSCKVMRDPNGISRG 363
++ FS FG I SCKV D +G G
Sbjct: 120 RDTFSTFGNIFSCKVAADASGSYSG 144
Score = 51.6 bits (122), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187
++++ L+ ++ + L D F G ++S ++ D S +S YG V N + A+D
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
LN LN K + + + K+ N+++KNL + L+ F FG I S
Sbjct: 76 LNFTHLNGKPTRI----MYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIFS 131
Query: 248 TAVMRDADG 256
V DA G
Sbjct: 132 CKVAADASG 140
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 139/205 (67%), Gaps = 7/205 (3%)
Query: 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGF 172
I+ S P RK I+IKNL++SIDNKA++DTFS FGNIL+C VA D G SRGYGF
Sbjct: 103 IINSNSTPDSRK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGF 157
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
V FD EE+A++AI+K+NGML N+++V V F+ +++RE T F N+YVKNL E TE
Sbjct: 158 VHFDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLGEEFTE 216
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-DDKEWYV 291
L+++F +G ITS +M D +G+S+ FGFV +++P A +V L+GK+ D+K YV
Sbjct: 217 QHLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYV 276
Query: 292 GKAQKKYEREMELKGKFEQSLKETA 316
+A K ER+ E+ K E+ ++ A
Sbjct: 277 ARALSKAERQQEINRKLEERKRQKA 301
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+Y+KNL + + F FG I + V +D DG S+ +GFV+FD + A ++E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G ++++ +V K + +RE E F+ NLYVKNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLGEEFTEQHLRE 221
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399
+F +G ITS K+M D G SR GFVA+ + A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 400 KEERRARLQAQFSQMR 415
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 110/207 (53%), Gaps = 10/207 (4%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A A + GI N+ D+R+ +Y+ +L+ S+++ +YD F+ G +++ V
Sbjct: 91 AGALASGSSGGGIINSNSTPDSRK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVA 145
Query: 73 RDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM--YSYRDPTIRKSGA-GN 129
+D S GYG+V+++ A A++++N N + + ++ RD K+ N
Sbjct: 146 KD-EDGNSRGYGFVHFDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKN 204
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+++KNL + + L + F +G I S K+ D G+SR +GFV ++N +SA +A+ L+
Sbjct: 205 LYVKNLGEEFTEQHLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLH 264
Query: 190 GMLLND-KQVFVGPFLRKQERESTADK 215
G L D K ++V L K ER+ ++
Sbjct: 265 GKQLGDNKFLYVARALSKAERQQEINR 291
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 113/148 (76%), Gaps = 1/148 (0%)
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS 332
A +VE +NG D YVG+AQKK ERE EL+ KFEQ +K +G NLY+KNLDDS
Sbjct: 2 AAAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 61
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D+KLKE+FSE+G +TS KVM +P G+SRG GFVA+S EEA +AL+EMNGKM+ KPL
Sbjct: 62 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 121
Query: 393 YVALAQRKEERRARLQAQFSQMRPPVGP 420
Y+ALAQRKE+RRA LQA FSQ+R P GP
Sbjct: 122 YIALAQRKEDRRAHLQALFSQIRAP-GP 148
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 83/140 (59%), Gaps = 12/140 (8%)
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTA------------DKTRFNNVYVKNLSETT 230
+A++K+NG+ L D ++VG +K ERE +K++ N+Y+KNL ++
Sbjct: 3 AAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSV 62
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
++ LK++F E+G +TS+ VM + G S+ FGFV + +P++A R++ +NGK K Y
Sbjct: 63 DDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 122
Query: 291 VGKAQKKYEREMELKGKFEQ 310
+ AQ+K +R L+ F Q
Sbjct: 123 IALAQRKEDRRAHLQALFSQ 142
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
KS N+++KNLD S+D++ L + FS +GN+ S KV + G SRG+GFV + N E A
Sbjct: 47 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 106
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERES 211
A+ ++NG ++ K +++ RK++R +
Sbjct: 107 ALSEMNGKMIGRKPLYIALAQRKEDRRA 134
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LY+ +LD SV+D +L ++F++ G V S +V + S G+G+V Y+ EA RAL
Sbjct: 51 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALS 109
Query: 100 ELNFTPLNGKPIRIMYSYR 118
E+N + KP+ I + R
Sbjct: 110 EMNGKMIGRKPLYIALAQR 128
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 182 bits (461), Expect = 5e-43, Method: Composition-based stats.
Identities = 92/153 (60%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTT 231
F+ E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN E
Sbjct: 60 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDME 119
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
++ L++IF +FG S VM D GKS+ FGFV
Sbjct: 120 DEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 102 bits (253), Expect = 5e-19, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ + K+ N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+
Sbjct: 4 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A R++E +NG +D++ +VG+ + + ERE E+ + + E N+Y+K
Sbjct: 63 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAK----------EFTNVYIK 112
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
N + + D+KL+E+FS+FG S +VM D G SR GFV
Sbjct: 113 NFGEDMEDEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 78.2 bits (191), Expect = 8e-12, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD S+++ LYD F+ G ++S +V D S GYG+V++ A RA+++
Sbjct: 16 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEK 73
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + GA N++IKN + ++++ L + FS FG
Sbjct: 74 MNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMEDEKLREIFSKFGPA 133
Query: 155 LSCKVATDSLGQSRGYGFV 173
LS +V TD G+SR +GFV
Sbjct: 134 LSIRVMTDDGGKSRSFGFV 152
Score = 75.9 bits (185), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +M
Sbjct: 16 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 74
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQ 410
NG ++ + ++V + ++ER A + A+
Sbjct: 75 NGMLLNDRKVFVGRFKSRKEREAEMGAR 102
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 142/231 (61%), Gaps = 5/231 (2%)
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ LK +FG+FG S VM D G SK FGFV+F +D ++V+ +NGK+ + K+ Y+
Sbjct: 3 DERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYI 62
Query: 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
+A K E + EL+ KFE ++ A +++G+NLYVKNLDD I + L++ FS FGTIT
Sbjct: 63 SRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGA 122
Query: 352 KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
K M + G S G GFV FS+ EEA+KA+TEMNG++V +KPL VALAQRKEER+A L Q+
Sbjct: 123 KFMME-GGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTNQY 181
Query: 412 SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP--QVIYSFLLIDYFN 460
Q V R P + P Q L + V+++ LL+ N
Sbjct: 182 MQRMASV--RAVPNPVILPATSQHLLQVTSWQLSHKLRTVLHTILLVKLLN 230
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 13/186 (6%)
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+D++ L D F FG LS KV D G S+G+GFV F E + A+D++NG LN KQ+
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 199 FVGPFLRKQERES---------TADK-TRFN--NVYVKNLSETTTEDDLKKIFGEFGIIT 246
++ + E ++ D+ TR+ N+YVKNL + E L+K F FG IT
Sbjct: 61 YISRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
M + G S+ FGFV F P++A ++V +NG+ K V AQ+K ER+ L
Sbjct: 121 GAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTN 179
Query: 307 KFEQSL 312
++ Q +
Sbjct: 180 QYMQRM 185
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
++D +L DLF + G +SV+V D S G+G+V++ + +A+DE+N LN K
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMD-EGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQ 59
Query: 111 IRIMYSYR-----------------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
I I +++ D R G N+++KNLD ID L FS FG
Sbjct: 60 IYISRAHKTAEWQTELRCKFEHMNQDRATRYQGV-NLYVKNLDDGIDEGCLQKEFSPFGT 118
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
I K + G S G+GFV+F + E A A+ ++NG ++ K + V RK+ER++
Sbjct: 119 ITGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQA-- 175
Query: 214 DKTRFNNVYVKNLS 227
N Y++ ++
Sbjct: 176 ---HLTNQYMQRMA 186
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D++LK+LF +FG S KVM D G S+G GFV+F E+ KA+ E+NGK + K +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 393 YVALAQRKEERRARLQAQFSQM 414
Y++ A + E + L+ +F M
Sbjct: 61 YISRAHKTAEWQTELRCKFEHM 82
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ +LYV +LD +++ L F+ G + + + S G+G+V +++ E
Sbjct: 87 ATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGAKFM--MEGGPSEGFGFVRFSSPEE 144
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR 118
AT+A+ E+N + KP+ + + R
Sbjct: 145 ATKAVTEMNGRIVATKPLCVALAQR 169
>gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major]
Length = 314
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 88/113 (77%), Positives = 99/113 (87%), Gaps = 6/113 (5%)
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
TITSCKVMRDP+GISRGSGFVAFST EE+++AL+EMNGKMV+SKPLYVALAQRKEERRAR
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 407 LQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
LQAQFSQMR P + PRMPMYPP APG+GQQLFYGQGPP +IP Q + +
Sbjct: 61 LQAQFSQMRPVAMPPSIAPRMPMYPPGAPGIGQQLFYGQGPPAMIPSQAGFGY 113
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VMRD G S+ GFV F P+++AR++ +NGK K YV AQ+K ER L
Sbjct: 2 ITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRARL 61
Query: 305 KGKFEQ 310
+ +F Q
Sbjct: 62 QAQFSQ 67
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
I SCKV D G SRG GFV F E + A+ ++NG ++ K ++V RK+ER +
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRA 59
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86
GG F SLYVGDL V ++ LY+ F+ G ++S+R+CRD TRRSLGY YV
Sbjct: 297 TRGGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYV 356
Query: 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHD 146
NY +A RAL+ LNF + G+P+RIM+S RDP++RKSG GN+FIKNL K+IDNKAL++
Sbjct: 357 NYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYN 416
Query: 147 TFSTFGNILSCKVATDSLGQSRGYGFVQF 175
FS FGNILSCKVA D G +GYGFV F
Sbjct: 417 IFSAFGNILSCKVACDEKG-PKGYGFVHF 444
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAID 186
++++ +L + L++ FS G ILS ++ D + + S GY +V + AK A++
Sbjct: 310 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 369
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN ++ + V + +R+ + K+ NV++KNL +T L IF FG I
Sbjct: 370 TLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 425
Query: 247 STAVMRDADGKSKCFGFVNF 266
S V D G K +GFV+F
Sbjct: 426 SCKVACDEKGP-KGYGFVHF 444
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S + RD +S + +VN+ P DA R++E
Sbjct: 311 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 370
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + +Q+ + SL+++ N+++KNL +I + L
Sbjct: 371 LNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NVFIKNLGKTIDNKAL 414
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
+FS FG I SCKV D G +G GFV F
Sbjct: 415 YNIFSAFGNILSCKVACDEKG-PKGYGFVHF 444
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 126/175 (72%), Gaps = 3/175 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S+RDP +R+SGAGN+++KNLD++IDNKAL+DTFS FGNILSCKVA G+SRG+GFV
Sbjct: 1 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 60
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED 233
F+++ESA++AI KLNGM + +K V+V PF + ER K F NVY+K++ + E+
Sbjct: 61 HFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTNVYIKHIPASWNEE 119
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
+K+ FG FG ITS AV D G+ F FVN+ + + A +VE ++GK ++E
Sbjct: 120 KIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRNEE 172
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL L F FG I S V DGKS+ FGFV+F+ + A ++ L
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG + +K YV +K ER F N+Y+K++ S +++K+K
Sbjct: 76 NGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKHIPASWNEEKIK 122
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
E F FG ITS V DP G R FV ++ E+A A+ EM+GK V
Sbjct: 123 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDGKDV 168
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+YVKNLD +I + L + FS FG I SCKV P+G SRG GFV F + E A A+ ++
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 383 NGKMVVSKPLYVALAQRKEER 403
NG + K +YVA ++ ER
Sbjct: 76 NGMQIGEKTVYVAPFKKTAER 96
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++YV +LD ++++ LYD F+ G ++S +V +S G+G+V++ + A
Sbjct: 10 RRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESA 68
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA----GNIFIKNLDKSIDNKALHDTFST 150
A+ +LN + K + + ++ R G N++IK++ S + + + + F
Sbjct: 69 EAAIAKLNGMQIGEKTVYVA-PFKKTAERNDGTPKNFTNVYIKHIPASWNEEKIKEEFGA 127
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
FG I S V TD G R + FV + E A++A+++++G
Sbjct: 128 FGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDG 165
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 183/337 (54%), Gaps = 12/337 (3%)
Query: 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA 127
S +V T + LGYGY+ +N+ EA R L ++N LNG+ +RI++S +
Sbjct: 113 SAKVVLHKRTSKPLGYGYLQFNSKEEADRCLQDMNNYVLNGQALRIVHSVS--KFDYNPK 170
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
N+ +KNLDK + + L D+F FG+I S K+ T G SRGY F+QF +EE A+ A++
Sbjct: 171 ANLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNA 230
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N + K++ + +K RE+ +T+FNN++VKNL + T +D LK +FG+FG I S
Sbjct: 231 MNQAEIKGKKIEINRHEKKATREN-PQQTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIES 289
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V RD G K +G+V F +PD A +V +N K+ DD+ V + K + E +G
Sbjct: 290 VTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQIDDQFLIVNQHISKKDNE-PTQGS 348
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS-EFGTITSCKVMRDPNGISRGS-- 364
+ + +K N+Y+K + + +++++L++ FS + I S K+ + I
Sbjct: 349 RLNPITQNLNKTFNSNIYIKFIPNEVTEEELRKTFSMKDANIVSIKLTKFVKKIEDQEVQ 408
Query: 365 ----GFVAFSTAEEASKALTEMNGKMVV-SKPLYVAL 396
++ + T A KA+ + V +KPL V L
Sbjct: 409 PYQFAYILYDTVLGAQKAIQTFDQSTVFGNKPLLVEL 445
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
F S VM D GKSK F FV+F+ +DA ++V+ +NGK+ + K+ YVG+AQKK E +
Sbjct: 10 FRPALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVEPQ 69
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
E K KFEQ ++T +++G+NLYVKNLDD I D+ L++ FS FGTITS KVM + G S
Sbjct: 70 TEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMME-GGRS 128
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+G GFV FS+ EEA+KA+ EMNG+ V +KPLYVALAQ KEE A L +Q+ Q
Sbjct: 129 KGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQYMQ 180
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 104/186 (55%), Gaps = 16/186 (8%)
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
+D++ L D F LS KV TD G+S+G+ FV F+ E A+ A+D++NG LN KQ+
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 199 FVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGIIT 246
+VG +K E ++ TR+ N+YVKNL + ++ L+K F FG IT
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTIT 117
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S VM + G+SK FGFV F P++A ++V+ +NG+ K YV AQ K E L
Sbjct: 118 SAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTS 176
Query: 307 KFEQSL 312
++ Q +
Sbjct: 177 QYMQRM 182
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 23/182 (12%)
Query: 51 VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110
++D +L DLF +SV+V D S + S G+ +V++ +A +A+DE+N LNGK
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGK-SKGFRFVSFERHEDAQKAVDEMNGKELNGKQ 56
Query: 111 IRIMYSYR------DP----------TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
I + + + +P TI + N+++KNLD ID++ L FS FG I
Sbjct: 57 IYVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTI 116
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S KV + G+S+G+GFV F + E A A+ ++NG + K ++V L + + ES A
Sbjct: 117 TSAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVA--LAQLKEESPAH 173
Query: 215 KT 216
T
Sbjct: 174 LT 175
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
+ D++LK+LF S KVM D +G S+G FV+F E+A KA+ EMNGK + K +
Sbjct: 1 MDDERLKDLFR---PALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 393 YVALAQRKEERRARLQAQFSQMR 415
YV AQ+K E + + +F QM+
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMK 80
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 86 RYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 143
Query: 96 RALDELNFTPLNGKPIRI 113
+A+ E+N + KP+ +
Sbjct: 144 KAVKEMNGRTVATKPLYV 161
>gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
gi|74697505|sp|Q8SR30.1|PABP_ENCCU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
Length = 502
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 201/379 (53%), Gaps = 25/379 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V + +A RA+
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAI 70
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E L+ + IR+M P GNIF+KNL + K L D FS FG I+SCK
Sbjct: 71 REYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAI---DKLNGMLLNDKQVFV---GPFLRKQEREST 212
VAT S G+S+GYGFVQF +++AK I L+G+LL ++ V P ++K E + T
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKT 186
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ F N ++KN +E +L ++ +G +TS +GK K F F NF++ + A
Sbjct: 187 S--ATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244
Query: 273 ARSVEALN-------GKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNL 324
+++ L+ G+ + +Y+ K Q+K ER EL+ FEQ S++ + K NL
Sbjct: 245 LNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYK---KNL 301
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
Y+ N+ + ++L +F EFG ITS V D + ++ +ST EEAS A+ N
Sbjct: 302 YITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNE 361
Query: 385 KMVVSKPLYVALAQRKEER 403
+ L VA + K ER
Sbjct: 362 IYLDGNRLQVAYFKNKLER 380
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 134/295 (45%), Gaps = 30/295 (10%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I++ L + L FS G +LS K+ + S + FV F+NEE A+ AI +
Sbjct: 16 IYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEEDAERAIREYK 74
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+++Q+ V ++K ER N++VKNL E T DL F FG I S
Sbjct: 75 HYELHNRQIRV---MKKDERPPET-----GNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVE---ALNGKKFDDKEWYVGKAQKKYEREMELKG 306
V + GKSK +GFV F + A + ++ +L+G V + Y E++ KG
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVV----ELYNPEIK-KG 181
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ K+T+ F N ++KN S+ +L EL +G +TS NG +G F
Sbjct: 182 E----SKKTSATF--TNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAF 235
Query: 367 VAFSTAEEASKALTEMNGKMV-------VSKPLYVALAQRKEERRARLQAQFSQM 414
F E A A+ ++G + Y+ QRKEER L+ F QM
Sbjct: 236 ANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQM 290
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 30/298 (10%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
D R + +++V +L L D F+ G++VS +V S +S GYG+V +
Sbjct: 89 DERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVA-TTSHGKSKGYGFVQFKEKK 147
Query: 93 EATRALDELNFTPLNGKPI---RIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNK 142
A + + NF+ L+G + RI+ +P I+K + N FIKN
Sbjct: 148 AAKKVIK--NFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFDASEA 205
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL-------ND 195
L + +G + S G+ +G+ F F+N ESA +AI L+G
Sbjct: 206 ELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTG 265
Query: 196 KQVFVGPFLRKQERE----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ ++ RK+ER S ++ N+Y+ N+ E ++L IF EFG I
Sbjct: 266 EAFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNI 325
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
TS +V D K + ++ + P++A+ +VE N D V + K ER E
Sbjct: 326 TSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 383
>gi|449329878|gb|AGE96146.1| polyadenylate-binding protein 2 [Encephalitozoon cuniculi]
Length = 502
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 201/379 (53%), Gaps = 25/379 (6%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V + +A RA+
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAI 70
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
E L+ + IR+M P GNIF+KNL + K L D FS FG I+SCK
Sbjct: 71 REYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAI---DKLNGMLLNDKQVFV---GPFLRKQEREST 212
VAT S G+S+GYGFVQF +++AK I L+G+LL ++ V P ++K E + T
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKT 186
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
+ F N ++KN +E +L ++ +G +TS +GK K F F NF++ + A
Sbjct: 187 S--ATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244
Query: 273 ARSVEALN-------GKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNL 324
+++ L+ G+ + +Y+ K Q+K ER EL+ FEQ S++ + K NL
Sbjct: 245 LNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYK---KNL 301
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
Y+ N+ + ++L +F EFG ITS V D + ++ +ST EEAS A+ N
Sbjct: 302 YITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNE 361
Query: 385 KMVVSKPLYVALAQRKEER 403
+ L VA + K ER
Sbjct: 362 IYLDGNRLQVAYFKNKLER 380
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 134/295 (45%), Gaps = 30/295 (10%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I++ L + L FS G +LS K+ + S + FV F+NEE A+ AI +
Sbjct: 16 IYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEEDAERAIREYK 74
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+++Q+ V ++K ER N++VKNL E T DL F FG I S
Sbjct: 75 HYELHNRQIRV---MKKDERPPET-----GNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVE---ALNGKKFDDKEWYVGKAQKKYEREMELKG 306
V + GKSK +GFV F + A + ++ +L+G V + Y E++ KG
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVV----ELYNPEIK-KG 181
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
+ K+T+ F N ++KN S+ +L EL +G +TS NG +G F
Sbjct: 182 E----SKKTSATF--TNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAF 235
Query: 367 VAFSTAEEASKALTEMNGKMV-------VSKPLYVALAQRKEERRARLQAQFSQM 414
F E A A+ ++G + Y+ QRKEER L+ F QM
Sbjct: 236 ANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQM 290
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 30/298 (10%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
D R + +++V +L L D F+ G++VS +V S +S GYG+V +
Sbjct: 89 DERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVA-TTSHGKSKGYGFVQFKEKK 147
Query: 93 EATRALDELNFTPLNGKPI---RIMYSYRDPTIRKSGAG-------NIFIKNLDKSIDNK 142
A + + NF+ L+G + RI+ +P I+K + N FIKN
Sbjct: 148 AAKKVIK--NFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFDASEA 205
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL-------ND 195
L + +G + S G+ +G+ F F+N ESA +AI L+G
Sbjct: 206 ELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTG 265
Query: 196 KQVFVGPFLRKQERE----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ ++ RK+ER S ++ N+Y+ N+ E ++L IF EFG I
Sbjct: 266 EAFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNI 325
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
TS +V D K + ++ + P++A+ +VE N D V + K ER E
Sbjct: 326 TSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 383
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 150/252 (59%), Gaps = 8/252 (3%)
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
SA L+G +++ K++FV F+ K ER + + F NVYV+NL E TED L ++F ++
Sbjct: 30 SARSALHGSMVDGKKLFVAKFINKDERAAMSWNQEFTNVYVENLIENVTEDILHRLFSQY 89
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
GI++S VMRD G+S+ GFVNF ++A ++VE L G++ K +VGKA +K ER
Sbjct: 90 GIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLCGRQLGSKTLFVGKALRKDERME 149
Query: 303 ELKGKFEQSLKETADKFEGL-NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
LK F + A G N+YVKNL +S++D +L+E+F +G I S KVMR NG S
Sbjct: 150 MLKQHFRDN--SIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGRS 207
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPR 421
+G GFV FS EE+ +A +N V KPL V + +RKE+ RL Q+ +P +
Sbjct: 208 KGFGFVCFSNREESKQAKRYLN---VDGKPLVVRVTERKEDTLKRLH-QYFHGQPRHYTQ 263
Query: 422 MPMYP-PVAPGL 432
P+ P P P L
Sbjct: 264 APLVPSPTQPVL 275
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 97/163 (59%), Gaps = 11/163 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++++NL +++ LH FS +G + S V D +G+SRG GFV F + E+AK A++ L
Sbjct: 67 NVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFL 126
Query: 189 NGMLLNDKQVFVGPFLRKQER-ESTADKTR----------FNNVYVKNLSETTTEDDLKK 237
G L K +FVG LRK ER E R ++N+YVKNLSE+ + L++
Sbjct: 127 CGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRLRE 186
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
IFG +G I S VMR +G+SK FGFV F + +++ ++ LN
Sbjct: 187 IFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 16/165 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV +L +V + L+ LF+Q G V SV V RD RS G G+VN+ A +A++
Sbjct: 66 TNVYVENLIENVTEDILHRLFSQYGIVSSVVVMRD-GMGRSRGLGFVNFCHLENAKKAVE 124
Query: 100 EL------NFTPLNGKPIR-------IMYSYRDPTIRKS--GAGNIFIKNLDKSIDNKAL 144
L + T GK +R + +RD +I K G N+++KNL +S+++ L
Sbjct: 125 FLCGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRL 184
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ F +G I+S KV G+S+G+GFV F N E +K A LN
Sbjct: 185 REIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 128/448 (28%), Positives = 209/448 (46%), Gaps = 57/448 (12%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ S+YV +L SV+++ L++LF G + +++ RD R LG+ YV + A A
Sbjct: 17 TTMSIYVANLPGSVSEADLFELFKPHGPLKVIKIPRDPKLRTPLGHAYVTFYNPDHADAA 76
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKS-------------GAGNIFIKNLDKSIDNKAL 144
L L T L G+ + + P+ S A +F+++ +D
Sbjct: 77 LGALKETELGGQQVTCALTEEVPSSASSMSTPPSSAHSPIDPARAVFVRDTRDGVDAATT 136
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQF--DNEESAKSAIDKLNGMLLNDKQVFVGP 202
+ G + SL FV EE++K D+L + ++ +
Sbjct: 137 KTALESLGAV--------SLQPKGPNAFVAVFPTAEEASKVLSDELANLEISPVR----- 183
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
KT F N++V+ LS TTE+ L+ F FG +TS + D ++K FG
Sbjct: 184 ----------DPKTHFTNLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGFG 233
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
FVNF++ DA +V AL+G + V +AQ K ER+ ELK +E + E G
Sbjct: 234 FVNFEEHRDAVTAVAALDGAELCGARISVSRAQSKVERQAELKRAYEANRIERLRNARGT 293
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NLY+ NL+ +I++++L+ FS+FG ITS ++M D G S+G GFV F + AS A+ EM
Sbjct: 294 NLYITNLNPAINNERLRAYFSKFGEITSVRIMLDAVGNSKGFGFVCFRDPDHASNAIAEM 353
Query: 383 NGKMVVSKPLYVALAQRKEERRA------RLQAQFSQMRPPVGPR------MPMYPPVAP 430
+ + + L VA+A +K+ + A R P VG MPM+ AP
Sbjct: 354 HNRPIEGNVLQVAIAHKKDPQSAPYSLGKRFPPSVGGAVPVVGMHGGIPGGMPMH--SAP 411
Query: 431 GLGQQLFYGQGPPIIPPQVIYSFLLIDY 458
+ + P ++PP ++ S ++ +
Sbjct: 412 NM-----HHVPPHLVPPHLMQSHMVQSH 434
>gi|123445099|ref|XP_001311313.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121893117|gb|EAX98383.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 419
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 193/375 (51%), Gaps = 15/375 (4%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L+VGDL V+ + + +LF + G S + + +V + + A RAL E+
Sbjct: 8 LFVGDLPGYVDGNFIKELFREYGNFPSGTITVKKHKSLDKSFAFVTFESHELARRALLEV 67
Query: 102 NFTPLNGKPIRIMYSYRDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N+T L+G PIRI++S DP + K + I +LD+ I+ LHD FS FG ++SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEVVSCK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ + G+ RG G+V F EE A + L +N K + + + + + S + F
Sbjct: 126 IPLTN-GKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIVLYCKPTRKNS---EETF 181
Query: 219 NNVYVKNL--SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
NV++K L T +DL K+ +FG + ++ + DG S FGF NF DA ++V
Sbjct: 182 TNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFGFCNFMYHQDAVKAV 241
Query: 277 EALNGKKF--DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
E+LNGK + E+ +AQ K ER+ L + + + ++ G NLY+KN+D SI+
Sbjct: 242 ESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETRGRNLYIKNIDRSIN 301
Query: 335 DDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392
D++ +E F +FG + C + R+ S+G GFV F T E A AL + K L
Sbjct: 302 DEEFEEYFKQFGEVEKCLISREAQEPHESKGFGFVLFKTKEGAQNALKNTIITPLKGKIL 361
Query: 393 YVALAQRKEERRARL 407
YV KEER L
Sbjct: 362 YVNYFIMKEEREHIL 376
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 137/285 (48%), Gaps = 23/285 (8%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+L + DLD + +QL+D+F+ G+VVS ++ L+ + G GYV + +A R +
Sbjct: 95 CTLIIFDLDEYIEAAQLHDIFSNFGEVVSCKI--PLTNGKPRGDGYVTFYKEEDAMRVKN 152
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--GNIFIKNLDKSI--DNKALHDTFSTFGNIL 155
+L +NGKPI+I+ Y PT + S N+FIK L N+ L FG +
Sbjct: 153 DLAQASINGKPIQIVL-YCKPTRKNSEETFTNVFIKPLLVKYFKTNEDLAKLMKDFGEFV 211
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLNDKQVFVG----------PFL 204
+ + + G S +GF F + A A++ LNG M ++ + FV FL
Sbjct: 212 NPSIKFNDDGTSSEFGFCNFMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFL 271
Query: 205 RKQE---RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD--GKSK 259
+Q R ++TR N+Y+KN+ + +++ ++ F +FG + + R+A +SK
Sbjct: 272 AEQSAEFRRRLYEETRGRNLYIKNIDRSINDEEFEEYFKQFGEVEKCLISREAQEPHESK 331
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
FGFV F + A +++ K YV K ERE L
Sbjct: 332 GFGFVLFKTKEGAQNALKNTIITPLKGKILYVNYFIMKEEREHIL 376
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats.
Identities = 90/153 (58%), Positives = 108/153 (70%), Gaps = 3/153 (1%)
Query: 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173
M+S RDP +RKSG GNIFIKN+D+SIDNKAL+DT S FGNILSCKV D G S+GYGFV
Sbjct: 1 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 174 QFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTT 231
F+ +E+A AI+ +NGMLLND++VFVG F ++ER E A F NVY+KN SE
Sbjct: 60 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDID 119
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264
+ LK IF EFG S VM D G S+ FGFV
Sbjct: 120 REKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 99.0 bits (245), Expect = 5e-18, Method: Composition-based stats.
Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 11/160 (6%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
+R+ K+ N+++KN+ E+ L FG I S V+ D +G SK +GFV+F+
Sbjct: 4 QRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+ A R++E +NG +D++ +VG + + ER E+ K E N+Y+K
Sbjct: 63 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAK----------AMEFTNVYIK 112
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
N + I +KLK +FSEFG S VM D +G SRG GFV
Sbjct: 113 NFSEDIDREKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 79.0 bits (193), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ ++D S+++ LYD + G ++S +V D S GYG+V++ A RA++
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAANRAIET 73
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGAG-----NIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN + + + + R + + GA N++IKN + ID + L FS FG
Sbjct: 74 MNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDIDREKLKSIFSEFGKT 133
Query: 155 LSCKVATDSLGQSRGYGFV 173
LS V TD G SRG+GFV
Sbjct: 134 LSVCVMTDESGCSRGFGFV 152
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KN+D+SI + L + S FG I SCKV+ D NG S+G GFV F T E A++A+ M
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETM 74
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQ 410
NG ++ + ++V + ++ER A + A+
Sbjct: 75 NGMLLNDRKVFVGHFKSRKERMAEMGAK 102
>gi|378756066|gb|EHY66091.1| hypothetical protein NERG_00787 [Nematocida sp. 1 ERTm2]
Length = 513
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 200/372 (53%), Gaps = 15/372 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGD+ S +S L+ +F+++GQ+ +V + R +LS + Y YV + A++
Sbjct: 20 SIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYAYVTFFDEASVPTAIE 79
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
NF LNG IR+M ++ + GNI IKNL K DN+ L+DTF FG I+SCKV
Sbjct: 80 TFNFYELNGSQIRVMPLDKESVVNNR-EGNIVIKNLPKETDNQTLYDTFIIFGPIVSCKV 138
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR-- 217
+SL + G G++Q+ + + A+ AI +N ++LN K++ + +RE +
Sbjct: 139 VKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLCAVQCVPNDKREKKRENVEKI 198
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F N+Y+KN + E+++KK E+G +TS V R G+ + F F N+ + A ++
Sbjct: 199 FTNIYMKNFPKGVEEEEIKKKLEEYGELTSFFVPRAETGEMRGFAFANYKTHEMAEAAIL 258
Query: 278 ALNGKKF------DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
L+ K F + + YV +A+ K ER E G F ++ + N+Y+ NL
Sbjct: 259 GLHDKPFFGGNSGEGENLYVQRAKLKSERVEETAGYFANPPEQEVRR----NIYITNLPG 314
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
++++ + + FS++G I + K+ D +R G+V + AE+A+KA+ N +P
Sbjct: 315 DLNEEDVVKYFSKYGPINTYKLGTDTKN-NRSYGYVFYQKAEDAAKAVELANKSEYCGQP 373
Query: 392 LYVALAQRKEER 403
L VA + K+ R
Sbjct: 374 LGVAFFKCKKLR 385
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 22/203 (10%)
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG--KSKCFGFVNFDDPDDAAR 274
R N++YV ++ +TTE DL +IF + G I + + R K KC+ +V F D
Sbjct: 17 RQNSIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYAYVTFFDEASVPT 76
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
++E N + + + V K+ + EG N+ +KNL
Sbjct: 77 AIETFNFYELNGSQIRVMPLDKE----------------SVVNNREG-NIVIKNLPKETD 119
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ L + F FG I SCKV+++ G G++ + + A A+ +N M+ K L
Sbjct: 120 NQTLYDTFIIFGPIVSCKVVKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLCA 179
Query: 395 ALA---QRKEERRARLQAQFSQM 414
++E++R ++ F+ +
Sbjct: 180 VQCVPNDKREKKRENVEKIFTNI 202
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q V ++Y+ +L +N+ + F++ G + + ++ D RS YGYV Y A +A
Sbjct: 301 QEVRRNIYITNLPGDLNEEDVVKYFSKYGPINTYKLGTDTKNNRS--YGYVFYQKAEDAA 358
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSG--AGNIF 131
+A++ N + G+P+ + + ++ +R+ G NI+
Sbjct: 359 KAVELANKSEYCGQPLGVAF-FKCKKLRELGKATNNIY 395
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 199/380 (52%), Gaps = 32/380 (8%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGD+ L+ ++L ++F + V ++ + + L+ + + +V +++A+ A A+ +
Sbjct: 23 IHVGDISLNTTANELKEVFKGLN-VTNIIMKKTLNGQ--YAFAFVKFDSANAAQEAVQKY 79
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N+T LNGK I + S D + S + NIF+ N+ + K L + F FG +LSCK++
Sbjct: 80 NYTMLNGKEILLTIS--DTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISR 137
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
S G+S+GYG+V + N +SAK A+ + +N+ +FV F Q+ ++ F N
Sbjct: 138 TSEGKSKGYGYVMYKNLKSAKKAVTNCQNVKINENILFVD-FYNPQKSARNSENKAFTNC 196
Query: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
+ KN TE +LK + ++G IT+ +DGK F VN+ P+ A R+++ L+
Sbjct: 197 FCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELHN 256
Query: 282 K------------KFDDKEWYVGKAQKKYEREMELKG------KFEQSLKETADKFEGLN 323
K KF + +Y+ K +KK ERE LK F LK N
Sbjct: 257 KQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILKSFYGNSVGFRNKLKR--------N 308
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L+++N+ S S+D+L E+ +FG IT K+ D + G+V +ST EEA+ AL +
Sbjct: 309 LFIQNVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIEEAAVALEKSK 368
Query: 384 GKMVVSKPLYVALAQRKEER 403
++ L +++ + K ER
Sbjct: 369 QVLLDGNQLELSIYKSKYER 388
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 26/290 (8%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S +++V ++ ++ L ++F G V+S ++ R S +S GYGYV Y A +A+
Sbjct: 103 SANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISRT-SEGKSKGYGYVMYKNLKSAKKAV 161
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKS---GAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
+N + + + + R S N F KN + L + +G I
Sbjct: 162 TNCQNVKINENILFVDFYNPQKSARNSENKAFTNCFCKNFPPNYTEAELKNLLKKYGEIT 221
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL-------NGMLLNDKQVFVGPFL---- 204
+ T S G+ G+ V + + ESA AID+L N + D + + PF
Sbjct: 222 TIYFPTKSDGKPVGFACVNYAHPESAVRAIDELHNKQIFNNNQMQKDTKFAIEPFYIQKN 281
Query: 205 -RKQERESTADKTRFN----------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
+K+ERE N N++++N+ + +ED+L +I +FG IT + D
Sbjct: 282 EKKKEREQILKSFYGNSVGFRNKLKRNLFIQNVPTSFSEDELLEILKKFGNITDFKLKLD 341
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
K FG+V + ++AA ++E D + + + KYER E
Sbjct: 342 TLHPEKQFGYVCYSTIEEAAVALEKSKQVLLDGNQLELSIYKSKYERSTE 391
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 196/403 (48%), Gaps = 21/403 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNY---NAAHEAT 95
S SL + L + +SQL +LF +G S+ + RD + + LG+GYVN+ ++A EA
Sbjct: 10 SASLRIDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAI 69
Query: 96 RALDELNFTPLNG-KPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+ LD ++ T N K I + ++ P + +G +F+KNL + +DNK + DTF++ G
Sbjct: 70 KVLDGMDLTGGNDDKGISLSFTPSQPASSAASSGTLFVKNLAEDVDNKTIFDTFASIGAP 129
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
S KV T + G+SRG+ V +D+ + A+ A+D+L G+++N K + + R Q +
Sbjct: 130 SSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNIRLE---RYQTGAQLKE 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
++R VY+ L T+ L + FG + S + D FV +D R
Sbjct: 187 ESRKRTVYLAGLPHEVTDKQLIDLLSPFGSVISVKLY-PKDKDRNPVAFVTMEDEQAVLR 245
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+VE LNG F+ + V + Q + + ++ET D LYV+N+ + +
Sbjct: 246 AVEKLNGGSFERQRITVAQLQARNPATQSSGPTSARQVEETKDA----TLYVRNIYEDVQ 301
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D L E F FG ++ + R NG +RG FV F E+ + AL N V +
Sbjct: 302 DSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFENPEDRAHALAAGNMLEVGGGKVQY 361
Query: 395 ALAQRKEERRARLQAQFS-QMRPPVGPRM--PMYPP--VAPGL 432
+ + KEE LQ S MRP G P PP V P L
Sbjct: 362 SAYRTKEE----LQNMSSFGMRPNAGAPAANPQCPPRQVGPTL 400
>gi|302408078|ref|XP_003001874.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
gi|261359595|gb|EEY22023.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
Length = 555
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 127/218 (58%), Gaps = 39/218 (17%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+L+ V ++ L++LF+ +G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T +NG+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDT S +
Sbjct: 119 LEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTISEGEDEDKV 178
Query: 158 KVA----------------------TDS-----------------LGQSRGYGFVQFDNE 178
K TD+ LG+S+G+GFV F N
Sbjct: 179 KEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFGFVCFSNP 238
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
E A A+ +N ++++K ++V RK R++ +++
Sbjct: 239 EDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQS 276
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 59/239 (24%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV L TE L ++F G + S V RDA +S + +VN++ D +++E
Sbjct: 62 SLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 121
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN + + + +Q+ + +L++ N+++KNLD +I + L
Sbjct: 122 LNYTVINGRPCRIMWSQR------------DPALRKNGQG----NVFIKNLDVAIDNKAL 165
Query: 339 KELFSEFGTITSCK-----------------VMRDPN----------------------G 359
+ SE K V ++ + G
Sbjct: 166 HDTISEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLG 225
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
S+G GFV FS E+A+KA+ +MN +M+ +KPLYVALAQRK+ R+ +L+ +QMR
Sbjct: 226 KSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQSIQARNQMR 284
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 48/227 (21%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ L+ + L + FS G + S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL-------------SETTTE 232
++LN ++N + + +R+ K NV++KNL SE E
Sbjct: 120 EELNYTVINGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTISEGEDE 175
Query: 233 DDLKKIFGEFGIITSTAVMR---------DAD-----------------GKSKCFGFVNF 266
D +K+ E + A DA+ GKSK FGFV F
Sbjct: 176 DKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFGFVCF 235
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+P+DA ++V +N + D+K YV AQ+K R K + EQS++
Sbjct: 236 SNPEDATKAVADMNQRMIDNKPLYVALAQRKDVR----KNQLEQSIQ 278
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 394 VALAQRKEERRARLQAQFSQ 413
VALAQRKEER+A L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 13/141 (9%)
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTT 231
A++++NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 61
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
++ L+K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV
Sbjct: 62 DEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
Query: 292 GKAQKKYEREMELKGKFEQSL 312
AQ+K ER+ L ++ Q +
Sbjct: 121 ALAQRKEERKAHLTNQYMQRV 141
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 22/148 (14%)
Query: 96 RALDELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSI 139
+A++E+N ++GK I R + I + N++IKNLD +I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 140 DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199
D++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++NG ++ K ++
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLS 227
V RK+ER K N Y++ ++
Sbjct: 120 VALAQRKEER-----KAHLTNQYMQRVA 142
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 45 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 102
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 103 KAVTEMNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRV 141
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 199/390 (51%), Gaps = 15/390 (3%)
Query: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
L + F + G+V + V D +T++S YGYV+++ A EA +AL+ NF L GK +R+M
Sbjct: 5 LEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVMR 64
Query: 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQ 174
+ GN+F+KNL + NK L D FS +GNILSCKVA D G+S YG+V
Sbjct: 65 QQLRFKQTCNPKGNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVH 124
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDD 234
F + + + +N ++ + ++V + K+ +++++D + YV N T TED
Sbjct: 125 FSDPNVTQKVLADMNKDVVEEGAMYVMEY-EKRMKDTSSD---WVTCYVANFPTTLTEDG 180
Query: 235 LKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF-----DDKEW 289
L+ +FG++G I S + K GFV F + D A ++VE L + +
Sbjct: 181 LRDLFGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVL 240
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YV + Q + ER + E+ KE ++ +G LYV D +I+ ++L+E+F +G I
Sbjct: 241 YVNRLQSREERASINQKILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIE 300
Query: 350 SCKVMRDPNGIS-RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
SC + RD N + GFV T E A A+ + L V LAQ +EER L+
Sbjct: 301 SCSIARDKNTKELKPFGFVCMDTTENAQNAIRAFRESHDLK--LKVELAQTREERAKMLK 358
Query: 409 AQFSQMRPPVG--PRMPMYPPVAPGLGQQL 436
+ Q + V P + P+ +G ++
Sbjct: 359 ERRKQTQGVVMQYPVVQYTMPIGMNMGNRM 388
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 24/291 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L+V +L + + +L D F+ G ++S +V D T +SL YGYV+++ + + L +
Sbjct: 78 NLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDPNVTQKVLAD 137
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+N + + +M + S ++ N ++ L D F +G I S +
Sbjct: 138 MNKDVVEEGAMYVMEYEKRMKDTSSDWVTCYVANFPTTLTEDGLRDLFGKYGTINSVYIG 197
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK-----QVFVGPFLRKQERESTADK 215
+ GFV F N +SA A++ L ++ + ++V ++ER S K
Sbjct: 198 YKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNRLQSREERASINQK 257
Query: 216 T--------------RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS-KC 260
RF +YV +T T + L++IF +G I S ++ RD + K K
Sbjct: 258 ILEEKKKEEVERTKGRF--LYVGFGDQTITLERLREIFQAYGNIESCSIARDKNTKELKP 315
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
FGFV D ++A ++ A ++ D + V AQ + ER LK + +Q+
Sbjct: 316 FGFVCMDTTENAQNAIRAF--RESHDLKLKVELAQTREERAKMLKERRKQT 364
>gi|93359570|gb|ABF13311.1| poly-A binding protein, partial [Phaseolus vulgaris]
Length = 172
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/113 (76%), Positives = 96/113 (84%), Gaps = 7/113 (6%)
Query: 347 TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
TITSCKVMRDPNG+SRGSGFVAFST EEAS+AL EMNGKMVVSKPLYV LAQRKE+RRAR
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 407 LQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
LQAQF+QMR P VGPR+PMYPP PG+GQQ+FY QGPP IIP Q + +
Sbjct: 61 LQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFY-QGPPAIIPSQPGFGY 112
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS VMRD +G S+ GFV F P++A+R++ +NGK K YV AQ+K +R L
Sbjct: 2 ITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRARL 61
Query: 305 KGKFEQ 310
+ +F Q
Sbjct: 62 QAQFAQ 67
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
I SCKV D G SRG GFV F E A A+ ++NG ++ K ++V RK++R +
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRA 59
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 61 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 120 RKEERQAHLTNQYMQ 134
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 13/137 (9%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDL 235
+NG LN KQ++VG +K ER++ + TR+ N+YVKNL + ++ L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+K F FG ITS VM + G+SK FGFV F P++A ++V +NG+ K YV AQ
Sbjct: 61 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 296 KKYEREMELKGKFEQSL 312
+K ER+ L ++ Q +
Sbjct: 120 RKEERQAHLTNQYMQRM 136
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 45 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 103
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER++ N Y++ ++
Sbjct: 104 NGRIVATKPLYVALAQRKEERQA-----HLTNQYMQRMA 137
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 40 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 97
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 98 KAVTEMNGRIVATKPLYVALAQR 120
>gi|47229360|emb|CAF99348.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 96/124 (77%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 AASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSC 157
ILSC
Sbjct: 125 ILSC 128
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G I S V RD +S + +VNF P DA R+++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+N + + +Q+ + SL+++ N+++KNLD SI + L
Sbjct: 72 MNFDVIKGRPVRIMWSQR------------DPSLRKSGVG----NIFIKNLDKSIDNKAL 115
Query: 339 KELFSEFGTITSC 351
+ FS FG I SC
Sbjct: 116 YDTFSAFGNILSC 128
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS +V D + + S GY +V F
Sbjct: 2 NPSAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N ++ + V + +R+ + K+ N+++KNL ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 238 IFGEFGIITST 248
F FG I S
Sbjct: 118 TFSAFGNILSC 128
>gi|402466517|gb|EJW01988.1| hypothetical protein EDEG_03560 [Edhazardia aedis USNM 41457]
Length = 571
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 148/256 (57%), Gaps = 7/256 (2%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD--LSTRRSLGYGYVNYNAAHEA 94
++ ++YVGDL+ D+ L+ LF+ G V+S+++ + L + SL Y YVNY + A
Sbjct: 3 LLNRTVYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCA 62
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIR--KSGAGNIFIKNLDKSIDNKALHDTFSTFG 152
+A+ LNF L+G IR+M + ++ K G NI +KNL S DNK L+DTFS FG
Sbjct: 63 LKAVQNLNFAELHGTQIRVMLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFG 122
Query: 153 NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
+I+S KVA DS + +G+GFV + ++ S K AI +G +N + V FLRK++R
Sbjct: 123 DIISSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVE 182
Query: 213 ADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
DK F N Y+KN +E+ LK+I +G ITS V R+AD K F F NF D
Sbjct: 183 KDKIEELFTNCYIKNFG-GLSEEQLKEICANYGEITSFVVPRNADNSLKGFAFCNFKDHV 241
Query: 271 DAARSVEALNGKKFDD 286
A +++E L+ +D
Sbjct: 242 SAKKAIEDLHDLSIED 257
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
+Y+ +AQ + ER LK +++ +E NLY+ L + S+ + E+FS+ GTI
Sbjct: 360 FYIQRAQTRQERHEFLKEFIKKAAEENLSY--KRNLYITTLPPTASEKDVLEIFSKHGTI 417
Query: 349 TSCKVMRDPNGISRGSGF--VAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
T+ K+ D I+ G F + + T EEA AL N ++ L V+ + K+ER+
Sbjct: 418 TNFKLKSD---INTGLKFCYICYKTPEEALIALERGNETILDGHKLNVSFFKTKKERQ 472
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 117/163 (71%), Gaps = 10/163 (6%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
M D GKS+ FGFV+F+ +DA + A NG F + W QKK ER+ ELK KFEQ
Sbjct: 1 MTDDSGKSRGFGFVSFERHEDAQK---ADNG--FLKENWI----QKKVERQAELKRKFEQ 51
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS
Sbjct: 52 MKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFS 110
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 111 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 153
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 10/158 (6%)
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND---KQVFVGPFLRKQERESTADK-T 216
TD G+SRG+GFV F+ E A+ A NG L + K+V L+++ + D+ T
Sbjct: 2 TDDSGKSRGFGFVSFERHEDAQKAD---NGFLKENWIQKKVERQAELKRKFEQMKQDRMT 58
Query: 217 RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FGFV F P++A +
Sbjct: 59 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATK 117
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 118 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 155
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 64 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATKAVTEM 122
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER++ N Y++ ++
Sbjct: 123 NGRIVATKPLYVALAQRKEERQA-----HLTNQYMQRMA 156
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 59 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--LEGGRSKGFGFVCFSSPEEAT 116
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 117 KAVTEMNGRIVATKPLYVALAQR 139
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 190/345 (55%), Gaps = 31/345 (8%)
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA-----GNIFIKNLD 136
Y +V + + +A R +++ N+T L+ + + +M I SG N+F+KN+
Sbjct: 92 SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLM-------ILTSGNVFPENANLFVKNIP 144
Query: 137 KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196
K K L++ F FG+I SCKV+ DS G+SRGYGFVQ++ ESA AI L K
Sbjct: 145 KEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGK 204
Query: 197 QVFVGPF---LRKQER-ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+ + F LR Q+ +S++ + F NV+VKN + TE LK I ++G I S +
Sbjct: 205 TLSISRFDRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPL 264
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE-----------WYVGKAQKKYERE 301
+ + F VNF+ +DAA++VE L+ K E +Y+ KA+++ ERE
Sbjct: 265 NEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPFYIQKAERRKERE 324
Query: 302 MELKGKFEQ-SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
++ + E SLK K NLY+ ++ ++ S+D++++LFS+FGTI S K+ + +
Sbjct: 325 ETIRKQLEALSLKGINSKN---NLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSEN 381
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
++ G++ F T EEA+ A M+G ++ + L ++ + K ERRA
Sbjct: 382 NKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRA 426
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 34/293 (11%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L+V ++ +LY++F G + S +V D S S GYG+V Y A +A+ +L
Sbjct: 138 LFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVD-SNGESRGYGFVQYETVESADKAIADL 196
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGA----------GNIFIKNLDKSIDNKALHDTFSTF 151
GK + I S D ++R N+F+KN S+ L D +
Sbjct: 197 RDEKFEGKTLSI--SRFDRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKY 254
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL------NDKQVFVGPFL- 204
G I S + + + G+ V F+ E A A++ L+ + D V PF
Sbjct: 255 GPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPFYI 314
Query: 205 ----RKQERESTADK----------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
R++ERE T K NN+Y+ ++ ET +ED+++ +F +FG I S +
Sbjct: 315 QKAERRKEREETIRKQLEALSLKGINSKNNLYIAHIPETFSEDEIRDLFSKFGTIVSIKL 374
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+ + +K FG++ F P++AA + EA++G D+ + + + K ER E
Sbjct: 375 QKTSSENNKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRAE 427
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 42/276 (15%)
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
K+ + L QS Y FV F + E AK ++K N L+D+++ + A
Sbjct: 82 KMKKNDLIQS-SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLMILTSGNVFPENA---- 136
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
N++VKN+ + T L +IF +FG I S V D++G+S+ +GFV ++ + A +++
Sbjct: 137 --NLFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIA 194
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG------LNLYVKNLDD 331
L +KF+ K + + F++SL++ N++VKN
Sbjct: 195 DLRDEKFEGKTLSISR--------------FDRSLRDQKHSDSSSSTSSFTNVFVKNFPS 240
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF--VAFSTAEEASKALTEMNGKMVVS 389
S+++ KLK++ ++G I C + N S GF V F AE+A+KA+ ++ K + S
Sbjct: 241 SLTEAKLKDILEKYGPI--CSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFS 298
Query: 390 -----------KPLYVALAQRKEERRARLQAQFSQM 414
P Y+ A+R++ER ++ Q +
Sbjct: 299 LEECQDSSVATCPFYIQKAERRKEREETIRKQLEAL 334
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NLS T+ +L +F + M+ D + FV F +DA R VE N
Sbjct: 57 NLSPKTSIAELVALFSREPVAIEDIKMKKNDLIQSSYAFVTFLSIEDAKRIVEKYNYTTL 116
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF-EGLNLYVKNLDDSISDDKLKELFS 343
D REM L + + + F E NL+VKN+ + KL E+F
Sbjct: 117 HD-------------REMTL------MILTSGNVFPENANLFVKNIPKEYTTKKLYEIFK 157
Query: 344 EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
+FG+I SCKV D NG SRG GFV + T E A KA+ ++ + K L ++ R
Sbjct: 158 DFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGKTLSISRFDR 213
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 189/382 (49%), Gaps = 23/382 (6%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ T+L+VG+L S+ +L +LF G++V RV D T S GYG+V Y+
Sbjct: 221 GKLKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDP 280
Query: 92 HEATRALDELNFTPLNGK--PIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149
A A+ +N + G+ +R+ + + ++ +++ NL + LHD F
Sbjct: 281 RYAAEAIKHMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFV 340
Query: 150 TFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-------- 200
+G + S KV D + G S+GYGFV++ + + A AI +LNG L+ K++ V
Sbjct: 341 PYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSS 400
Query: 201 GPFLRKQEREST----ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-AD 255
G Q T + +NVYV+NL D L +F +G +TS V D
Sbjct: 401 GSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTS 460
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKET 315
G SK +GFV F DP DAA +V LNG + ++ V E + +LKE
Sbjct: 461 GISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSPVESHANNR---TLKE- 516
Query: 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375
+ NLYV N+ S++ KL ELF FG IT V+ N S+G GFV F+ + A
Sbjct: 517 ---IDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCA 573
Query: 376 SKALTEMNGKMVVSKPLYVALA 397
++A+ MNG ++ + + V +A
Sbjct: 574 AEAVAMMNGALIEGETISVRVA 595
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 181/389 (46%), Gaps = 37/389 (9%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ + LYV +L L +++ +L+DLF GQV SV+V RD +T S GYG+V Y+
Sbjct: 311 GSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDP 370
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA--------------------GNIF 131
A A+ +LN + GK + + R + SG+ N++
Sbjct: 371 QHAAHAIFQLNGHLIEGKKMEV----RVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVY 426
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190
++NL ++ L + F +G + S KVA D + G S+GYGFV+F + A A+ +LNG
Sbjct: 427 VQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNG 486
Query: 191 MLLNDKQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
L+ +++ V + T + +N+YV N+ + + L ++F FG I
Sbjct: 487 CLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFGRI 546
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
T V+ ++ SK +GFV F D AA +V +NG + + V A +
Sbjct: 547 THAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVS 606
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
S + + LYV NL ++S DKL LF FG I + +
Sbjct: 607 QHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAE-------YS 659
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYV 394
FV ++ A+KAL M+G ++ K L V
Sbjct: 660 FVLYADINSAAKALKHMDGYLIEGKRLVV 688
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 113/454 (24%), Positives = 184/454 (40%), Gaps = 54/454 (11%)
Query: 18 PSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
PS ANN + ++ ++LYV ++ S+N ++L +LF G++ V S
Sbjct: 501 PSSPVESHANNRTL---KEIDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQ-SN 556
Query: 78 RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS-------------------YR 118
S GYG+V + +H A A+ +N + G+ I + +
Sbjct: 557 NSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINA 616
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
P I +++ NL +++ L F FG I D + Y FV + +
Sbjct: 617 SPEINNC---RLYVTNLPQTMSADKLVSLFMPFGQI-------DRVVMYAEYSFVLYADI 666
Query: 179 ESAKSAIDKLNGMLLNDKQVFV----------GPFLRKQERESTADKTRFNNVYVKNLSE 228
SA A+ ++G L+ K++ V Q + N+YV +
Sbjct: 667 NSAAKALKHMDGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPS 726
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
T + L +IF +G I A DA +G + + + AA +++ L+G +
Sbjct: 727 AVTCEQLVQIFCLYGEIVQ-AKKFDAG-----YGMIRYANASSAAAAIDHLDGYQIGGST 780
Query: 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
V A E ++ + Q+ + + NLYV L ++ DKL ELF G I
Sbjct: 781 LVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQI 840
Query: 349 TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
T KV+ D G+S+G GFV F+ A A+ A+T MNG + L V A + A
Sbjct: 841 TQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAGVQPSDMASY 900
Query: 408 QAQFSQMRPPVGP-RMPMYPPVAPGLGQQLFYGQ 440
A F P RM + P + +YGQ
Sbjct: 901 MAHFYSYFTSTDPSRMAVGIPTS---DWSYYYGQ 931
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 120 RKEERKAHLTNQYMQ 134
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 13/137 (9%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDL 235
+NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T ++ L
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV AQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 296 KKYEREMELKGKFEQSL 312
+K ER+ L ++ Q +
Sbjct: 120 RKEERKAHLTNQYMQRV 136
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 103
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER K N Y++ ++
Sbjct: 104 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 137
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 40 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 97
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 98 KAVTEMNGRIVGSKPLYVALAQR 120
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD+I D+KL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKPLYVALAQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 399 RKEERRARLQAQFSQ 413
RKEER+A L Q+ Q
Sbjct: 120 RKEERKAHLTNQYMQ 134
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 13/137 (9%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDL 235
+NG ++ K +FVG +K ER++ + +R+ N+Y+KNL +T ++ L
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
+K F FG ITS VM + DG+SK FGFV F P++A ++V +NG+ K YV AQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 296 KKYEREMELKGKFEQSL 312
+K ER+ L ++ Q +
Sbjct: 120 RKEERKAHLTNQYMQRV 136
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 103
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER K N Y++ ++
Sbjct: 104 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 137
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 40 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 97
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 98 KAVTEMNGRIVGSKPLYVALAQR 120
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 158/293 (53%), Gaps = 16/293 (5%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
R GNIF+KNL +S +K L D FS FG I+SCKVAT G+S+GYGFVQF +++AK
Sbjct: 6 RPPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAK 65
Query: 183 SAI---DKLNGMLLNDKQVFV---GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
I + LNG++L ++ V P ++K E + + T F N ++KN TTE +L
Sbjct: 66 KVIKNFNNLNGLMLGGNKIAVELYNPDMKKGESKKVS--TMFTNCFIKNFPVDTTEKELL 123
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK-KFDDKE-----WY 290
++ +G +TS DGK K F F NF+ + A ++ L+G FD + +Y
Sbjct: 124 ELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFY 183
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITS 350
+ K Q+K ER EL+ FEQ L + NLY+ N+ + ++L +F EFG+ITS
Sbjct: 184 IQKGQRKEERAEELRKMFEQ-LSMQGQSYRK-NLYITNIPEGFGAEELNNIFKEFGSITS 241
Query: 351 CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
V D + ++ +ST EEAS A+ N + L V+ + K ER
Sbjct: 242 MSVGIDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLER 294
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 29/297 (9%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
D R + +++V +L S L D F+ G++VS +V +S GYG+V +
Sbjct: 4 DERPPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVA-TTPQGKSKGYGFVQFKEKK 62
Query: 93 EATRALDELNFTPLNGKPI---RIMYSYRDPTIRKSGA-------GNIFIKNLDKSIDNK 142
A + + NF LNG + +I +P ++K + N FIKN K
Sbjct: 63 AAKKVIK--NFNNLNGLMLGGNKIAVELYNPDMKKGESKKVSTMFTNCFIKNFPVDTTEK 120
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG- 201
L + +G + S G+ +G+ F F++ ESA +AI+ L+G D G
Sbjct: 121 ELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGE 180
Query: 202 PFL-----RKQERE----------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
PF RK+ER S ++ N+Y+ N+ E ++L IF EFG IT
Sbjct: 181 PFYIQKGQRKEERAEELRKMFEQLSMQGQSYRKNLYITNIPEGFGAEELNNIFKEFGSIT 240
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
S +V D K + ++ + P++A+ +VE N D V + K ER E
Sbjct: 241 SMSVGIDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLERMKE 297
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 25/220 (11%)
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+RK ER N++VKNL E+ T DL F FG I S V GKSK +GF
Sbjct: 1 MRKDERPPET-----GNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGF 55
Query: 264 VNFDDPDDAARSVEA---LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
V F + A + ++ LNG + V + Y +M+ KG+ K+ + F
Sbjct: 56 VQFKEKKAAKKVIKNFNNLNGLMLGGNKIAV----ELYNPDMK-KGE----SKKVSTMF- 105
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
N ++KN ++ +L EL +G +TS +G +G F F + E A A+
Sbjct: 106 -TNCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAIN 164
Query: 381 EMNGKMVV------SKPLYVALAQRKEERRARLQAQFSQM 414
++G +P Y+ QRKEER L+ F Q+
Sbjct: 165 NLHGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQL 204
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 134/226 (59%), Gaps = 22/226 (9%)
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
++GMLLN VFVG F +E+E+ L E + G +S
Sbjct: 1 MDGMLLNGLNVFVGRFRSPKEQEA-------------ELGARAKESKV-------GPASS 40
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
V+ D GKSK FGFV+F+ +D +++ +NGK+F + Y+ A KK E + ELK K
Sbjct: 41 VKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVEEQTELKCK 99
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
FEQ ++ +++G N+ VKNLD+SI D++L++ FS FG I S VM + G S+ GFV
Sbjct: 100 FEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMME-GGCSKRFGFV 158
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
FS+ EE +KA+T MNGK+V SKPL+VALAQ KE+R A Q+ Q
Sbjct: 159 CFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQ 204
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
S G S KV TD G+S+G+GFV F+ E ++A+D +NG + Q ++ +K E
Sbjct: 33 SKVGPASSVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVE 91
Query: 209 RESTADKTRFN-------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD 255
E T K +F NV VKNL E+ ++ L+K F FGII S VM +
Sbjct: 92 -EQTELKCKFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG- 149
Query: 256 GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
G SK FGFV F P++ A++V A+NGK K +V AQ K +R ++ Q +
Sbjct: 150 GCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQKM 206
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 26/184 (14%)
Query: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR-- 118
+++G SV+V D +S G+G+V++ + A+D +N +G I + +
Sbjct: 33 SKVGPASSVKVITD-EGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKV 90
Query: 119 ---------------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
D R GA N+ +KNLD+SID++ L FS FG I S V +
Sbjct: 91 EEQTELKCKFEQMKQDRITRYQGA-NVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG 149
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYV 223
G S+ +GFV F + E A+ +NG ++ K + V K++R + F N Y+
Sbjct: 150 -GCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLA-----HFTNQYM 203
Query: 224 KNLS 227
+ ++
Sbjct: 204 QKMA 207
>gi|147863122|emb|CAN82975.1| hypothetical protein VITISV_026120 [Vitis vinifera]
Length = 213
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 95/129 (73%), Gaps = 9/129 (6%)
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
N YV + +IS + EF + +VMRDPNGISRGSGFVAFSTA+EAS+ L +
Sbjct: 77 FNGYVLAYEFAISGIWKFKCLMEF----NGQVMRDPNGISRGSGFVAFSTAKEASRVLAD 132
Query: 382 MNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMPMYPPVAPGLGQQL 436
MNGKMV SKPLYVALAQ KE+RR RLQAQFSQMR P VGPRM MYPP PGLGQQL
Sbjct: 133 MNGKMVASKPLYVALAQWKEDRRTRLQAQFSQMRPTAMAPSVGPRMSMYPPGTPGLGQQL 192
Query: 437 FYGQGPPII 445
FYGQGP ++
Sbjct: 193 FYGQGPQLL 201
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
VMRD +G S+ GFV F +A+R + +NGK K YV AQ K +R L+ +F
Sbjct: 104 VMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQFS 163
Query: 310 QSLKETA 316
Q ++ TA
Sbjct: 164 Q-MRPTA 169
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDL V + LY F G + R+CRD T LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIK+LDKSIDN+ L FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
G S+GY +V FD+ +A AI +NG+ LN++QV+V
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEALNG 281
V +L TED L K F G + T + RD S +G+VNF P DA ++ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 282 KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKEL 341
+ K + + +Q + L+++ N+++K+LD SI + L L
Sbjct: 82 DLINGKPFRLMWSQP------------DDRLRKSGVG----NIFIKHLDKSIDNRTLFYL 125
Query: 342 FSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
FS FG I SCKV+ D NG S+G +V F + A++A+ MNG + ++ +YV
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +L + L+ F G + ++ D + S GYG+V F A+ A++ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++K+L ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
V+ D +G SK + +V+FD A R++ +NG ++++ YV
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
>gi|365760899|gb|EHN02583.1| Pes4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 598
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 185/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA RA++EL
Sbjct: 80 LFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERAMEEL 139
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NG+ IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 140 NYTDVNGREIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 199
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ----------- 207
L + GFV F+NE++A++ I N K++ G K+
Sbjct: 200 -----LDSRKDIGFVYFENEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 254
Query: 208 ---------ERESTADKTRF---------------NNVYVKNLSETTTEDDLKKIFGEFG 243
E+E + T+ N++++KNL TT DD+ F E G
Sbjct: 255 SRLDAETIIEKEQALNATQLKRNDGASKNNQSSSQNSIFIKNLPIITTRDDVLNFFSEVG 314
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + +D+ ++++ N F K+ V +AQ K ER
Sbjct: 315 PIKSI-YLSNATKVKYLWAFVTYKSNEDSEKAIKRYNNFYFRGKKLLVSRAQDKEER--- 370
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 371 --AKFIESQKMST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYNESSA 420
Query: 364 --SGFVAFSTAEEASKALTEMNGKMV 387
SG + F E+A++ +N ++V
Sbjct: 421 TYSGHIKFRNFEDATRIFNFLNNRLV 446
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 136/311 (43%), Gaps = 43/311 (13%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L F F + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 80 LFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERAMEEL 139
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N +++ + P LR +T K NV+ NL + T F +G I
Sbjct: 140 NYTDVNGREIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 195
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S + D GFV F++ A ++ N F K+ G +++E+
Sbjct: 196 LSCKLDSRKD-----IGFVYFENEKTARNVIKMYNNTSFFGKKILCGI---HFDKEVRSV 247
Query: 306 GKFEQS-----LKETADKFEGLN---------------------LYVKNLDDSISDDKLK 339
FE + +K + LN +++KNL + D +
Sbjct: 248 PNFETQKSRLDAETIIEKEQALNATQLKRNDGASKNNQSSSQNSIFIKNLPIITTRDDVL 307
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
FSE G I S + + + FV + + E++ KA+ N K L V+ AQ
Sbjct: 308 NFFSEVGPIKSI-YLSNATKVKYLWAFVTYKSNEDSEKAIKRYNNFYFRGKKLLVSRAQD 366
Query: 400 KEERRARLQAQ 410
KEER +++Q
Sbjct: 367 KEERAKFIESQ 377
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 184/377 (48%), Gaps = 35/377 (9%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L V +LD ++D QL D+F + G ++ +C+ S S+G G V Y + +A A+ ++
Sbjct: 81 LVVKNLDPRMDDQQLRDIFGEFG---TMTLCKVAS---SIGVGLVTYESFDDAHAAMTQV 134
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N LNG+ +++ P+ + ++NL ++L FG + +
Sbjct: 135 NGMYLNGQQVQVHRLPERPS--------LIVRNLPADASEESLAALCRPFGRVGVATIVQ 186
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG-PFLRKQERESTADKTRFN- 219
++ + G V D E A +AI L+G L Q+ V P R + +A R
Sbjct: 187 EA-PEDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERECESAVAQRLER 245
Query: 220 ---NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ +KN+ +D L+++F FG I S +MRD GKSK +GFV + + A++++
Sbjct: 246 LQGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAM 305
Query: 277 EALNGKKFD------DKEWYVGKAQK---KYEREMELKGKFEQSLKETADKFEGLNLYVK 327
A +G+ FD D + K R E++ E + K NL ++
Sbjct: 306 AATHGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRK----NLCIR 361
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NL +SI + +L+ LF+ FG I +C V+RD G SR GFV F+T EEASKA+ EM+GK
Sbjct: 362 NLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPS 421
Query: 388 --VSKPLYVALAQRKEE 402
P+ V L+ R +
Sbjct: 422 PGTQMPMTVTLSHRARD 438
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 150/281 (53%), Gaps = 27/281 (9%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K GA + +KNLD +D++ L D F FG + CKVA+ S G G V +++ + A +
Sbjct: 75 KVGAIKLVVKNLDPRMDDQQLRDIFGEFGTMTLCKVAS-----SIGVGLVTYESFDDAHA 129
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
A+ ++NGM LN +QV V R ER S + V+NL +E+ L + FG
Sbjct: 130 AMTQVNGMYLNGQQVQVH---RLPERPS---------LIVRNLPADASEESLAALCRPFG 177
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+ ++++A + G V D +DA ++ AL+G K + V + ERE E
Sbjct: 178 RVGVATIVQEAPEDAP-MGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERECE 236
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363
++ + ++ +G L +KN+D + DD+L+ELF+ FGTI S +MRD G S+G
Sbjct: 237 ------SAVAQRLERLQG-KLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKG 289
Query: 364 SGFVAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRKEE 402
GFVA+ST E ASKA+ +G+ +++PL V + E
Sbjct: 290 YGFVAYSTTEAASKAMAATHGQTFDRLTRPLDVTIFTSSEH 330
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 172/349 (49%), Gaps = 34/349 (9%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+YV ++D +V L +F Q G +VS + RD S G G+V+Y A A A+ +
Sbjct: 471 IYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRD-DAGISKGIGHVDYLHADAARAAVAAM 529
Query: 102 NFTPLN--GKPIRIMYSYRDPTIRKSGA--GNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+ L G+P+R+ S DP R S ++ IKNL++SI+ AL D FS FG ILS
Sbjct: 530 DGKRLTATGQPLRV--SLPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSS 587
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
+ Q R V F +EE+ ++AI +NG ++N V P++RK R
Sbjct: 588 RTIET---QPRA-ALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR-------- 635
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+VYV NL L +F + G I +T V RD GFV FD P + E
Sbjct: 636 --SVYVANLPANYNYVKLMALFADCGKIVTTIVPRD----FSTVGFVCFDQPA-SVELAE 688
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+G + +E YV + L+ T++ LY+ N+D S+DK
Sbjct: 689 RFHGHVLEGEELYVSR--------FPLQTDPAPPPHATSEVAPYHILYLTNVDFEASEDK 740
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
++EL + +GT+T+ V R +G SRG FV F+ E+ASKA ++G++
Sbjct: 741 VRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQI 789
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 187/410 (45%), Gaps = 72/410 (17%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA------- 94
L + ++D+ ++D QL +LF G ++S+ + RD T +S GYG+V Y+ A
Sbjct: 250 LVIKNMDVDMDDDQLEELFAPFGTIISLHIMRD-ETGKSKGYGFVAYSTTEAASKAMAAT 308
Query: 95 --------TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKS 138
TR LD FT + + + + R +R N+ I+NL +S
Sbjct: 309 HGQTFDRLTRPLDVTIFT--SSEHDGMFKANRVAEVRHHAEVARIAQFRKNLCIRNLGES 366
Query: 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198
ID K L F+ FG I +C V D +G+SR GFV F E A A+ +++G Q+
Sbjct: 367 IDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPSPGTQM 426
Query: 199 FVGPFLRKQERE-------------STADKTRFNN---------VYVKNLSETTTEDDLK 236
+ L + R+ S+ D+ + +YVKN+ +DL+
Sbjct: 427 PMTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKLIYVKNIDPAVELEDLQ 486
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
++FG+FG I S+ +MRD G SK G V++ D A +V A++GK+ G+
Sbjct: 487 RVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKRL----TATGQ--- 539
Query: 297 KYEREMELKGKFEQSLKETADKFEGL---NLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
SL + D+F + +L +KNL+ SI+ L++LFS FG I S +
Sbjct: 540 ----------PLRVSLPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSSRT 589
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ + V F + E A+ +NG +V P+ + RK+ R
Sbjct: 590 IE----TQPRAALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR 635
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 150/299 (50%), Gaps = 31/299 (10%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187
G + IKN+D +D+ L + F+ FG I+S + D G+S+GYGFV + E+A A+
Sbjct: 248 GKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAMAA 307
Query: 188 LNGMLLN------DKQVFV-----GPFL--RKQERESTADKTRF----NNVYVKNLSETT 230
+G + D +F G F R E A+ R N+ ++NL E+
Sbjct: 308 THGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRKNLCIRNLGESI 367
Query: 231 TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290
E L+ +F FG I + V+RD G+S+ GFV+F ++A+++V ++GK +
Sbjct: 368 DEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPSPGTQMP 427
Query: 291 VGKAQKKYEREME------LKGKFEQSLKETADKFEGLN-----LYVKNLDDSISDDKLK 339
+ R+ + GK + S E EG +YVKN+D ++ + L+
Sbjct: 428 MTVTLSHRARDAQDPPAPNASGK-DSSTDEAEPDAEGQIRPRKLIYVKNIDPAVELEDLQ 486
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS--KPLYVAL 396
+F +FG I S +MRD GIS+G G V + A+ A A+ M+GK + + +PL V+L
Sbjct: 487 RVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKRLTATGQPLRVSL 545
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 43/239 (17%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NVY+K++ + TE+ +++ FG FG ITS A+ D G+ F FVNF + + A +VE
Sbjct: 4 FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVE 61
Query: 278 ALNGKKFDDKE---------------------------------------WYVGKAQKKY 298
++G+ ++E YV +AQ K
Sbjct: 62 DMDGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKA 121
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ER LK +F +F G+NLYVKNL +++ D++LK +F FGTITS KVM D
Sbjct: 122 ERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDK 181
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
G+SRG GFV FST EEA+KA+T+M+ K++ KPLYV + +++E+R RLQ ++ PP
Sbjct: 182 GVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRYRA--PP 238
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 53/231 (22%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IK++ S + + + F FG I S + TD G R + FV F E A++A++ +
Sbjct: 6 NVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--RRFAFVNFAEFEQARAAVEDM 63
Query: 189 NGMLLNDKQ---------------------------------------VFVGPFLRKQER 209
+G + +++ ++V K ER
Sbjct: 64 DGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKAER 123
Query: 210 EST----------ADKTRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK 257
+ A RF N+YVKNL ET +++LK++F FG ITS VM D G
Sbjct: 124 AAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGV 183
Query: 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
S+ FGFV F ++A ++V ++ K K YVG +K+ +R L+ ++
Sbjct: 184 SRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G N+++KNL +++D+ L F FG I S KV TD G SRG+GFV F E A A+
Sbjct: 143 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 202
Query: 186 DKLNGMLLNDKQVFVGPFLRKQER 209
++ L+ K ++VG ++++R
Sbjct: 203 TDMHLKLIGGKPLYVGMHEKREQR 226
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LYV +L +V+D++L +F G + SV+V D S G+G+V ++ EAT
Sbjct: 141 RFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTD-DKGVSRGFGFVCFSTHEEAT 199
Query: 96 RALDELNFTPLNGKPIRI-MYSYRDPTIRK 124
+A+ +++ + GKP+ + M+ R+ + +
Sbjct: 200 KAVTDMHLKLIGGKPLYVGMHEKREQRLER 229
>gi|303391122|ref|XP_003073791.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
gi|303302939|gb|ADM12431.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
Length = 410
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 17/293 (5%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
R GNIF+KNL ++ +K L D FS FG I SCKVAT S G+S+GYGFVQF +++AK
Sbjct: 6 RPPETGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGFVQFKEKKAAK 65
Query: 183 SAI---DKLNGMLLNDKQVFV---GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236
I + LNG++L + ++ V P ++K E + T T F N ++KN E++L+
Sbjct: 66 KVIKNFNNLNGLMLGENKIVVELYNPEMKKGENKKTP--TMFTNCFIKNFPVDVEEENLR 123
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK-KFDDKE----WYV 291
++ ++G +TS DGK K F F NF+ + A +++ L+ F D E +Y+
Sbjct: 124 ELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYI 183
Query: 292 GKAQKKYEREMELKGKFEQ-SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITS 350
K Q+K ER EL+ FEQ S++ + K NLY+ N+ + ++L +F EFG ITS
Sbjct: 184 QKGQRKEERAEELRKTFEQLSMQGQSYK---KNLYITNIPEGFGAEELNNIFREFGNITS 240
Query: 351 CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
V D + +V +ST EEAS A+ N + L VA + K ER
Sbjct: 241 MSVGTDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLER 293
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 132/296 (44%), Gaps = 28/296 (9%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
D R + +++V +L + L D F+ G++ S +V S +S GYG+V +
Sbjct: 4 DERPPETGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVA-TTSHGKSKGYGFVQFKEKK 62
Query: 93 EATRALDELNFTPLNGKPI---RIMYSYRDPTIRK-------SGAGNIFIKNLDKSIDNK 142
A + + NF LNG + +I+ +P ++K + N FIKN ++ +
Sbjct: 63 AAKKVIK--NFNNLNGLMLGENKIVVELYNPEMKKGENKKTPTMFTNCFIKNFPVDVEEE 120
Query: 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN-----GMLLNDKQ 197
L + +G + S T G+ +G+ F F++ E A +AI L+ G + +
Sbjct: 121 NLRELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEP 180
Query: 198 VFVGPFLRKQERESTADKT----------RFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
++ RK+ER KT N+Y+ N+ E ++L IF EFG ITS
Sbjct: 181 FYIQKGQRKEERAEELRKTFEQLSMQGQSYKKNLYITNIPEGFGAEELNNIFREFGNITS 240
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+V D K + +V + P++A+ +VE N D V + K ER E
Sbjct: 241 MSVGTDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 296
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 24/219 (10%)
Query: 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
+RK ER N++VKNL E T DL F FG ITS V + GKSK +GF
Sbjct: 1 MRKDERPPET-----GNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGF 55
Query: 264 VNFDDPDDAARSVEA---LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
V F + A + ++ LNG + + V + Y EM+ KG+ K+T F
Sbjct: 56 VQFKEKKAAKKVIKNFNNLNGLMLGENKIVV----ELYNPEMK-KGE----NKKTPTMF- 105
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
N ++KN + ++ L+EL ++G +TS +G +G F F + E A A+
Sbjct: 106 -TNCFIKNFPVDVEEENLRELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIK 164
Query: 381 EMN-----GKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
++ G +P Y+ QRKEER L+ F Q+
Sbjct: 165 NLHETFPFGDGESGEPFYIQKGQRKEERAEELRKTFEQL 203
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 104/168 (61%), Gaps = 15/168 (8%)
Query: 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
AQKK ER ELK K EQ E K++G+NLYVKNLD+S+ D+ LK+ F FG ITS KV
Sbjct: 1 AQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKV 60
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
M D NG S+G GFV F EEA+ A+TEMN KMV SKPLYVALAQRKE+RRA+L +Q+ Q
Sbjct: 61 MTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 120
Query: 414 ------MRPPVGPRMPMYPPVAPGLG--------QQLFYGQGPPIIPP 447
M V P MY P G G QQ + GP I P
Sbjct: 121 RLASMRMHSNV-PGGGMYNPAQTGPGYYVANPMQQQRNFAGGPQIARP 167
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 58/93 (62%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKNL E+ ++ LKK F FG ITS VM D +G+SK FGFV F+ P++A +V +
Sbjct: 30 NLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEM 89
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
N K K YV AQ+K +R +L ++ Q L
Sbjct: 90 NSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 122
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 57/83 (68%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD+S+D++AL F FGNI S KV TD G+S+G+GFV F+ E A +A+ ++
Sbjct: 30 NLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEM 89
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
N ++ K ++V RK++R +
Sbjct: 90 NSKMVCSKPLYVALAQRKEDRRA 112
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +LD SV+D L F G + S +V D RS G+G+V + EA
Sbjct: 24 QKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTD-ENGRSKGFGFVCFEKPEEA 82
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIR 123
T A+ E+N + KP+ + + R R
Sbjct: 83 TTAVTEMNSKMVCSKPLYVALAQRKEDRR 111
>gi|331224641|ref|XP_003324992.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303982|gb|EFP80573.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 306
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 129/238 (54%), Gaps = 9/238 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDL + + QL +F+Q V +R+ +TR Y YV Y++A AT A+
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
E N T GKP R+M S S A N+F+K+L + A HDTF+ FG +LS K+
Sbjct: 89 EFNQTEFLGKPCRVMKSIHGAAKGLSEA-NVFVKHLPAKLSAIAFHDTFADFGEVLSSKL 147
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN----DKQVFVGPFLRKQERESTADK 215
A D L +GYGFVQ+ E A+ AI + NG L+ K + F++K+ R + +
Sbjct: 148 AIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIKTSLFIKKENRIVSRE- 206
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NV+ +NLS T + K+ + ++G+ITS + DGK GF NF+ P AA
Sbjct: 207 --FKNVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTGFANFEKPSAAA 262
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 25/191 (13%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVM---RDADGKSKCFGFVNFDDPDDAARSV 276
+VYV +L TE+ L ++F + + + R+ + + + +V + D A ++
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFR-RAYAYVTYSSADAATAAI 87
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
N +F K V K S+ A N++VK+L +S
Sbjct: 88 REFNQTEFLGKPCRVMK-----------------SIHGAAKGLSEANVFVKHLPAKLSAI 130
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV----VSKPL 392
+ F++FG + S K+ D + +G GFV ++TAE+A KA+ E NG + +KP+
Sbjct: 131 AFHDTFADFGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPI 190
Query: 393 YVALAQRKEER 403
+L +KE R
Sbjct: 191 KTSLFIKKENR 201
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 28/294 (9%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNI--LSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
++++ +L I + L FS + + K+ + R Y +V + + ++A +AI
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 187 KLNGMLLNDKQVFVG-PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+ N + F+G P + A NV+VK+L + F +FG +
Sbjct: 89 EFN------QTEFLGKPCRVMKSIHGAAKGLSEANVFVKHLPAKLSAIAFHDTFADFGEV 142
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S+ + D K +GFV + + A +++ NG D V A K + + +K
Sbjct: 143 LSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLD-----VEGATKPIKTSLFIK 197
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
+ + + +F+ N++ +NL I+ +K K+ +S++G ITS + +G G+G
Sbjct: 198 ----KENRIVSREFK--NVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTG 251
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYV----ALAQRKEER-RARLQAQFSQM 414
F F E+ S A + P V AL + + ER ++R AQ S++
Sbjct: 252 FANF---EKPSAAAKVVKVTQKKKAPGRVHAVRALTRSERERYKSRKAAQASEV 302
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNYNA 90
G A+ +++V L ++ +D F G+V+S ++ D L+ + GYG+V Y
Sbjct: 108 GAAKGLSEANVFVKHLPAKLSAIAFHDTFADFGEVLSSKLAIDHLNVPK--GYGFVQYAT 165
Query: 91 AHEATRALDELNFTPLN----GKPIRI-MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
A +A +A+ E N + L+ KPI+ ++ ++ I N+F +NL I +
Sbjct: 166 AEQAQKAIRETNGSTLDVEGATKPIKTSLFIKKENRIVSREFKNVFFRNLSTKITLEKFK 225
Query: 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
T+S +G I S ++ G+ G GF F+ +A
Sbjct: 226 QTWSKYGVITSAFLSLGKDGKPTGTGFANFEKPSAA 261
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 119/170 (70%), Gaps = 3/170 (1%)
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL 322
+F+DP+ A ++VEALNG K YV QK+ ER+ ELK KF++ E ++++G+
Sbjct: 1 MASFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGV 60
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NLYVKNL D+I D +L++ F++FGTITS KVM +G S+G GFV F + EEA+KA+ EM
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEM 120
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGL 432
N K++ ++PLYVALAQ+K++R+A+L +Q+ M+ MP + + PG+
Sbjct: 121 NEKLIEARPLYVALAQKKQDRKAQLASQY--MQRTSSRDMPEH-RIGPGV 167
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 18/197 (9%)
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-------RFN-----NVY 222
F++ E+A+ A++ LNG K ++V ++ ER++ + R N N+Y
Sbjct: 4 FEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNLY 63
Query: 223 VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
VKNL++ + L+K F +FG ITS VM DG+SK FGFV F P++AA+++ +N K
Sbjct: 64 VKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNEK 123
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE-----GLNLYVKNLDDSISDDK 337
+ + YV AQKK +R+ +L ++ Q + D E G+NL++KNLD SI D+K
Sbjct: 124 LIEARPLYVALAQKKQDRKAQLASQYMQRTS-SRDMPEHRIGPGVNLFIKNLDKSIDDEK 182
Query: 338 LKELFSEFGTITSCKVM 354
L+E FS+FGTITS KV+
Sbjct: 183 LREEFSQFGTITSAKVV 199
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 16/139 (11%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNL +ID+ L F+ FG I S KV T G+S+G+GFV F + E A AI ++
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEM 120
Query: 189 NGMLLNDKQVFVGPFLRKQERE-----------STADKTRFN-----NVYVKNLSETTTE 232
N L+ + ++V +KQ+R+ S+ D N+++KNL ++ +
Sbjct: 121 NEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDD 180
Query: 233 DDLKKIFGEFGIITSTAVM 251
+ L++ F +FG ITS V+
Sbjct: 181 EKLREEFSQFGTITSAKVV 199
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 25/146 (17%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNYNAAHE 93
++ +LYV +L +++D +L F Q G + S +V ++T RS G+G+V + + E
Sbjct: 56 RYQGVNLYVKNLADNIDDVRLRKEFAQFGTITSAKV---MTTEDGRSKGFGFVCFRSPEE 112
Query: 94 ATRALDELNFTPLNGKPIRIMY-------------------SYRDPTIRKSGAG-NIFIK 133
A +A+ E+N + +P+ + S RD + G G N+FIK
Sbjct: 113 AAKAIVEMNEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIK 172
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKV 159
NLDKSID++ L + FS FG I S KV
Sbjct: 173 NLDKSIDDEKLREEFSQFGTITSAKV 198
>gi|328851168|gb|EGG00325.1| hypothetical protein MELLADRAFT_28015 [Melampsora larici-populina
98AG31]
Length = 223
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 119/216 (55%), Gaps = 14/216 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+L VN L ++F+Q V++ RVC D T++ GYGYV+Y EA AL E
Sbjct: 1 SLYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALRE 60
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
N L GKPIR+M SY N+FIKNL KS LHD+F FG ILS K++
Sbjct: 61 FNHINLKGKPIRVMRSYSGKPKEFPSEANLFIKNLPKSFTPINLHDSFERFGKILSSKIS 120
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL---------NDKQVFVGPFLRKQERES 211
D LG S+GYG++QF+N + + AI N N K++ V +++ ++R
Sbjct: 121 FDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVKPEDR-- 178
Query: 212 TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
K +F NV+ +NL TE+ K EFG ITS
Sbjct: 179 ---KPKFTNVFFRNLPLDFTEESFSKYASEFGKITS 211
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKL 188
+++ NL ++ + L + FS +++ +V D + Q RGYG+V + E A A+ +
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N + L K + V + +E ++ N+++KNL ++ T +L F FG I S+
Sbjct: 62 NHINLKGKPIRVMRSYSGKPKEFPSEA----NLFIKNLPKSFTPINLHDSFERFGKILSS 117
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ D G SK +G++ F++P D+ ++ N +FD K+ K KK K
Sbjct: 118 KISFDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKL--------KV 169
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC 351
+K K + N++ +NL +++ + SEFG ITS
Sbjct: 170 TSYVKPEDRKPKFTNVFFRNLPLDFTEESFSKYASEFGKITSL 212
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 25/168 (14%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFG-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
+YV NL++ DL IF + +I + + K + +G+V++ P++A ++
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL----NLYVKNLDDSISD 335
N + LKGK + ++ + K + NL++KNL S +
Sbjct: 62 N--------------------HINLKGKPIRVMRSYSGKPKEFPSEANLFIKNLPKSFTP 101
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
L + F FG I S K+ D G S+G G++ F +++++A+ N
Sbjct: 102 INLHDSFERFGKILSSKISFDQLGNSKGYGYIQFENPKDSNEAILNSN 149
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEM 382
LYV NL D ++ L +FS+ + + +V D RG G+V+++T EEA AL E
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 383 NGKMVVSKPLYV 394
N + KP+ V
Sbjct: 62 NHINLKGKPIRV 73
>gi|123430889|ref|XP_001307992.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889649|gb|EAX95062.1| hypothetical protein TVAG_428650 [Trichomonas vaginalis G3]
Length = 537
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 149/271 (54%), Gaps = 21/271 (7%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L + + L + G+VV+V L R++ + +V ++ A +A+ E
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVT----LKERQNGNFAFVTFDTPESALKAIKEF 66
Query: 102 NFTPLNGKPIRIMYSYRD-PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
N+T LNG PI I + ++ + KSG GN++++ LD I+ LH+ F T+G ++SCK+
Sbjct: 67 NYTKLNGSPIVITPTTQEYQNLIKSGEGNLYVRGLDVYIEVSQLHELFQTYGEVISCKLP 126
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR--- 217
T + G ++GY +VQF + A+ A +LN ++N K++ V P+ +K+ + T+ +
Sbjct: 127 TGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYKKKERPQKTSPASNPRG 186
Query: 218 -------FNNVYVKNL-SETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
F N++++NL S E DL +F EFG++ ST ++ D GF N D
Sbjct: 187 APASDDVFTNIFIRNLPSNVRNETDLGNLFSEFGVVISTKMLPDG-----FSGFCNMIDH 241
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
D A R+++ALNGK D K V +A K ER
Sbjct: 242 DSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 14/275 (5%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+ I NL I + G +++ + Q+ + FV FD ESA AI + N
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVTLKER---QNGNFAFVTFDTPESALKAIKEFN 67
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LN + + P QE ++ K+ N+YV+ L L ++F +G + S
Sbjct: 68 YTKLNGSPIVITP--TTQEYQNLI-KSGEGNLYVRGLDVYIEVSQLHELFQTYGEVISCK 124
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ DG +K + +V F DP+DA ++ LN + K+ V +KK +
Sbjct: 125 LPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYKKKERPQKTSPASNP 184
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDK-LKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+ + D F N++++NL ++ ++ L LFSEFG + S K++ P+G S GF
Sbjct: 185 RGAPASDDVF--TNIFIRNLPSNVRNETDLGNLFSEFGVVISTKML--PDGFS---GFCN 237
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
+ A +A+ +NGK++ K L V A KEER
Sbjct: 238 MIDHDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP 269
E ++DK V++ NL T D +K + E G + + + +G F FV FD P
Sbjct: 4 EQSSDKV----VHISNLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FAFVTFDTP 56
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
+ A ++++ N K + + ++Y Q+L ++ + NLYV+ L
Sbjct: 57 ESALKAIKEFNYTKLNGSPIVITPTTQEY-----------QNLIKSGEG----NLYVRGL 101
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
D I +L ELF +G + SCK+ +G+++G +V F +A KA E+N ++
Sbjct: 102 DVYIEVSQLHELFQTYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVING 161
Query: 390 KPLYVALAQRKE 401
K + V ++KE
Sbjct: 162 KKISVEPYKKKE 173
>gi|331243001|ref|XP_003334145.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313135|gb|EFP89726.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 142/268 (52%), Gaps = 11/268 (4%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALD 99
S+YVGDL ++ + +L +F+Q V+SV++ S + Y Y+ Y++A + A+
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYSSADKVDEAIR 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
E N T GKP R+M R ++ N+F+++L ++ A HDTF+ FG ILS ++
Sbjct: 89 EYNHTKFAGKPCRVMKPKRG-IVKGPPEANVFVQDLPLALSALAFHDTFAEFGEILSSRL 147
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN----DKQVFVGPFLRKQERESTADK 215
+ D S+GYGF+Q+ E A++AI + NG LL+ +K + F++K S +
Sbjct: 148 SVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLDVAGGEKPIRTSIFVKKDAPSSPTSR 207
Query: 216 T---RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
F N++ KNL T + K + ++G+ITS + D DGK F +F + DA
Sbjct: 208 AAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAFASFQNHSDA 267
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYER 300
R ++A K D E Y +A K ER
Sbjct: 268 VRVIKATQRKGPD--EVYAVRALSKAER 293
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 18/279 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKV--ATDSLGQSRGYGFVQFDNEESAKSAID 186
++++ +L +I + L FS +LS ++ + S+ R Y ++ + + + AI
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYSSADKVDEAIR 88
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+ N K P + + NV+V++L + F EFG I
Sbjct: 89 EYNHTKFAGK-----PCRVMKPKRGIVKGPPEANVFVQDLPLALSALAFHDTFAEFGEIL 143
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG 306
S+ + D + SK +GF+ + + A ++ NG D V +K + +K
Sbjct: 144 SSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLD-----VAGGEKPIRTSIFVKK 198
Query: 307 KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366
S A E NL+ KNL I+ + K +S++G ITS + D +G G+ F
Sbjct: 199 DAPSSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAF 258
Query: 367 VAFSTAEEASKAL--TEMNGKMVVSKPLYVALAQRKEER 403
+F +A + + T+ G V Y A K ER
Sbjct: 259 ASFQNHSDAVRVIKATQRKGPDEV----YAVRALSKAER 293
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM---RDADGKSKCFGFVNFDDPDDAARS 275
++VYV +L TE++L K+F + + S + R G + + ++ + D +
Sbjct: 28 HSVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGP-RAYAYIAYSSADKVDEA 86
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+ N KF K V K ++ +KG E N++V++L ++S
Sbjct: 87 IREYNHTKFAGKPCRVMKPKRGI-----VKGPPEA------------NVFVQDLPLALSA 129
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
+ F+EFG I S ++ D +S+G GF+ ++T E+A A+ E NG ++
Sbjct: 130 LAFHDTFAEFGEILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLL 181
>gi|262192741|gb|ACY30440.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 99
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/98 (77%), Positives = 84/98 (85%), Gaps = 6/98 (6%)
Query: 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
DP+G+S+GSGFVAFST EEAS+AL+EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 60
Query: 416 P-----PVGPRMPMYPPVAPGLGQQLFYGQG-PPIIPP 447
P V PRMPMYPP GLGQQ+FYGQ P ++PP
Sbjct: 61 PIAMASSVAPRMPMYPPGGHGLGQQIFYGQPQPAMLPP 98
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
D G SK GFV F P++A+R++ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 58
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
D G S+G GFV F E A A+ ++NG ++ K ++V RK+ER +
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRA 50
>gi|170042459|ref|XP_001848942.1| polyadenylate-binding protein [Culex quinquefasciatus]
gi|167866018|gb|EDS29401.1| polyadenylate-binding protein [Culex quinquefasciatus]
Length = 339
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 142/255 (55%), Gaps = 31/255 (12%)
Query: 148 FSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
FS+ GN+LSCKVA D G S+GY FV F SA SAID++NG+ +N + V P
Sbjct: 2 FSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVSPL---- 57
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD 267
F ++V+N + T+ L+++F +G I + V KS+ GF+ +D
Sbjct: 58 ----------FTKLHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYD 101
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
P+ A ++EALNGK D GKA R + + + Q A+ E + ++V+
Sbjct: 102 SPEAAGHALEALNGKALSD-----GKAL----RVVPVPERVLQPAPRLAEG-EAVQVFVR 151
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387
NLD SI + L ELF+ +G + ++++ G S+G GFV +++ E+A++A+ EMN + V
Sbjct: 152 NLDASIDNRHLGELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDREV 210
Query: 388 VSKPLYVALAQRKEE 402
K +YV LA+ KE+
Sbjct: 211 AGKRIYVVLARGKEK 225
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 146/304 (48%), Gaps = 42/304 (13%)
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
+F+ +G V+S +V D+ S GY +V + A A A+D +N +NG + +
Sbjct: 1 MFSSVGNVLSCKVALDIQGC-SKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAV----- 54
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
P K + ++N + L + F+ +G+I + V +SRG GF+ +D+
Sbjct: 55 SPLFTK-----LHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYDSP 103
Query: 179 ESAKSAIDKLNGMLLND-KQVFVGP----FLRKQERESTADKTRFNNVYVKNLSETTTED 233
E+A A++ LNG L+D K + V P L+ R + + + V+V+NL +
Sbjct: 104 EAAGHALEALNGKALSDGKALRVVPVPERVLQPAPRLAEGEAVQ---VFVRNLDASIDNR 160
Query: 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV-- 291
L ++F +G + ++++ GKSK FGFV + + AAR++ +N ++ K YV
Sbjct: 161 HLGELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDREVAGKRIYVVL 219
Query: 292 --GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE--FGT 347
GK + K E++ + E A + +L +K + D D+LK L + +
Sbjct: 220 ARGKEKPKPVSEVD-------AGHEPATTTDDTSLLLKTITDP---DELKSLLAHQLYPL 269
Query: 348 ITSC 351
+ +C
Sbjct: 270 VKAC 273
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
NG+A NG A + T L+V + + + L +LF G + + V +S
Sbjct: 42 VNGLAVNGA-SLAVSPLFTKLHVRNFGDRLTQTTLQELFAPYGSIKAHGV-------KSR 93
Query: 82 GYGYVNYNAAHEATRALDELNFTPL-NGKPIRIM-----YSYRDPTIRKSGAGNIFIKNL 135
G G++ Y++ A AL+ LN L +GK +R++ P + + A +F++NL
Sbjct: 94 GCGFIIYDSPEAAGHALEALNGKALSDGKALRVVPVPERVLQPAPRLAEGEAVQVFVRNL 153
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D SIDN+ L + F+ +G++ + + G+S+G+GFV + + E A AI ++N +
Sbjct: 154 DASIDNRHLGELFAPYGDVQRGFIVKEQ-GKSKGFGFVTYASGEQAARAIVEMNDREVAG 212
Query: 196 KQVFV 200
K+++V
Sbjct: 213 KRIYV 217
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-----VSKPLYVA 395
+FS G + SCKV D G S+G FV F A A+ +NG V PL+
Sbjct: 1 MFSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVSPLFTK 60
Query: 396 LAQR 399
L R
Sbjct: 61 LHVR 64
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ ++V +LD S+++ L +LF G V + ++ +S G+G+V Y + +A RA+
Sbjct: 145 AVQVFVRNLDASIDNRHLGELFAPYGDVQRGFIVKEQG--KSKGFGFVTYASGEQAARAI 202
Query: 99 DELNFTPLNGKPIRIMYS 116
E+N + GK I ++ +
Sbjct: 203 VEMNDREVAGKRIYVVLA 220
>gi|294461458|gb|ADE76290.1| unknown [Picea sitchensis]
Length = 313
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 86/102 (84%), Gaps = 7/102 (6%)
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
MRD +G S+GSGFVAFS+ +EAS+AL EMNGK+VVSKPLYVALAQRKEERRARLQAQFSQ
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
Query: 414 MRPPVG------PRMPMYPPVAPGLGQQLFYGQGPP-IIPPQ 448
+R PVG R+PMYPP PGL QQ+FYGQGPP +IPPQ
Sbjct: 61 LRNPVGMAPAVPARVPMYPPGGPGLNQQIFYGQGPPALIPPQ 102
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
MRD G SK GFV F PD+A+R++ +NGK K YV AQ+K ER L+ +F Q
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
D G S+G GFV F + + A A+ ++NG ++ K ++V RK+ER +
Sbjct: 3 DFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRA 52
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 139/241 (57%), Gaps = 21/241 (8%)
Query: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
V F+ + AK + ++ +LLN+ + + T KT+ +YVKN + E
Sbjct: 5 VHFEIQVEAKRVVHAVD-VLLNESG------MSDEHVNDTESKTKTCPIYVKNFVKEIDE 57
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
DD FG+ G ST ++ + G+ FG + F+ DA R+V+ + G + Y+
Sbjct: 58 DDF---FGKCG--ASTKIINNDCGQQTEFGLLPFNKQKDAIRAVDKMKGM-----DIYLA 107
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352
+A+ K +R+ E K E K ++ +NLYVKNL I D +LK+ F+ FGTITS K
Sbjct: 108 QAKIKEKRQTEFSKKPEPLHK---PRYNSVNLYVKNLSYEIDDYRLKKEFAPFGTITSAK 164
Query: 353 VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412
VMR+ G S+G GFV FST EA KAL+EMNGK++ SKPLYVA AQRK+ER+ L Q++
Sbjct: 165 VMRE-GGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYVAWAQRKQERQVSLAQQYT 223
Query: 413 Q 413
Q
Sbjct: 224 Q 224
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 20/203 (9%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
T K+ I++KN K ID D F G S K+ + GQ +G + F+ ++
Sbjct: 37 TESKTKTCPIYVKNFVKEIDED---DFFGKCG--ASTKIINNDCGQQTEFGLLPFNKQKD 91
Query: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-------ADKTRFN--NVYVKNLSETTT 231
A A+DK+ GM +++ K++R++ K R+N N+YVKNLS
Sbjct: 92 AIRAVDKMKGM-----DIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKNLSYEID 146
Query: 232 EDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291
+ LKK F FG ITS VMR+ G+SK FGFV F P +A +++ +NGK K YV
Sbjct: 147 DYRLKKEFAPFGTITSAKVMREG-GRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYV 205
Query: 292 GKAQKKYEREMELKGKFEQSLKE 314
AQ+K ER++ L ++ Q +++
Sbjct: 206 AWAQRKQERQVSLAQQYTQRMEK 228
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 83 YGYVNYNAAHEATRALDELNFTPLNGKPIRIM------YSYRDPTIRKS--GAGNIFIKN 134
+G + +N +A RA+D++ + +I +S + + K + N+++KN
Sbjct: 81 FGLLPFNKQKDAIRAVDKMKGMDIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKN 140
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L ID+ L F+ FG I S KV + G+S+G+GFV F A+ A+ ++NG +L
Sbjct: 141 LSYEIDDYRLKKEFAPFGTITSAKVMREG-GRSKGFGFVCFSTPAEARKALSEMNGKILA 199
Query: 195 DKQVFVGPFLRKQERE 210
K ++V RKQER+
Sbjct: 200 SKPLYVAWAQRKQERQ 215
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ S +LYV +L ++D +L F G + S +V R+ RS G+G+V ++ EA
Sbjct: 130 RYNSVNLYVKNLSYEIDDYRLKKEFAPFGTITSAKVMREGG--RSKGFGFVCFSTPAEAR 187
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+AL E+N L KP+ + ++ R
Sbjct: 188 KALSEMNGKILASKPLYVAWAQR 210
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 106/153 (69%), Gaps = 6/153 (3%)
Query: 286 DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345
++++ V +AQKK ER+ ELK ++EQ E +++G+NLYVKNL D+I+D+ L+ F +
Sbjct: 13 EQKFTVCRAQKKSERQAELKRRYEQYKAERIQRYQGVNLYVKNLHDTINDETLRSNFESY 72
Query: 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
G ITS KVM D +G S+G GFV F A+EA+KA+ EMN K++ +KPLYVALAQRKE+R+A
Sbjct: 73 GNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEMNNKIIENKPLYVALAQRKEDRKA 132
Query: 406 RLQAQFSQ------MRPPVGPRMPMYPPVAPGL 432
+L +Q+ Q M+ P G MY P + G
Sbjct: 133 QLASQYMQRLAAMRMQNPAGLMGTMYAPASGGF 165
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKNL +T ++ L+ F +G ITS VM D G+SK FGFV F+ D+A ++V +
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEM 109
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
N K ++K YV AQ+K +R+ +L ++ Q L
Sbjct: 110 NNKIIENKPLYVALAQRKEDRKAQLASQYMQRL 142
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 60/95 (63%)
Query: 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176
Y+ I++ N+++KNL +I+++ L F ++GNI S KV D G+S+G+GFV F+
Sbjct: 38 YKAERIQRYQGVNLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFE 97
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
+ A A+ ++N ++ +K ++V RK++R++
Sbjct: 98 KADEATKAVVEMNNKIIENKPLYVALAQRKEDRKA 132
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
+++ +LYV +L ++ND L F G + S +V D R S G+G+V + A EA
Sbjct: 44 QRYQGVNLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGR-SKGFGFVCFEKADEA 102
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
T+A+ E+N + KP+ + + R RK+ + +++ L
Sbjct: 103 TKAVVEMNNKIIENKPLYVALAQRKED-RKAQLASQYMQRL 142
>gi|440302784|gb|ELP95091.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 546
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 179/351 (50%), Gaps = 23/351 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++V L +V DS L + + +VVS+ V ++ S Y+N + A R +
Sbjct: 22 TIFVSGLTNNVTDSLLSSVVMEKFPTEVVSIHVTKNES-HFDTPIAYINMSTHDAAKRVI 80
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
LN ++GKPI + ++ +D R N+F+KN+ KS++ K L D FS G LS K
Sbjct: 81 STLNGVMVDGKPINMFWALKDFKQRTDTQTNLFVKNIKKSVNQKELQDVFSAIGETLSVK 140
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLRKQERESTADKTR 217
++ + G+S G+G+V++ E+ ++A+DK + + ++ FV KQ +K+R
Sbjct: 141 LSLNEKGESNGFGYVKYRTLEATQAALDKSDELKAKIGEETFVVQKFEKQ------NKSR 194
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTA------VMRDADGKSKCFGFVNFDDPDD 271
N+YV N+ + TE+ K F FG I T+ + + K GFV+F++ +D
Sbjct: 195 KTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFENEED 254
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
AA++V A + E V + K ER E K K + K++ NLYV L +
Sbjct: 255 AAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKGKYKDFNLYVDTLKE 314
Query: 332 SISDDKLKELFSEFGTITSCKVM---RDPNGISRGSGFVAFSTAEEASKAL 379
SI++ +++E E G I S + R P G++ ++ ++TAE A+ A+
Sbjct: 315 SITEKEIREGLGEEGEIYSLSIRWVDRKPTGVA----YLCYTTAEGANNAI 361
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 27/263 (10%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R T+L+V ++ SVN +L D+F+ +G+ +SV++ + S G+GYV Y
Sbjct: 105 RTDTQTNLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLN-EKGESNGFGYVKYRTLEAT 163
Query: 95 TRALDELN-FTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
ALD+ + G+ ++ + KS N+++ N+DK + + F TFG
Sbjct: 164 QAALDKSDELKAKIGEETFVVQKFEKQN--KSRKTNLYVYNIDKKVTEEQFIKYFETFGP 221
Query: 154 ILSCK--------VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205
I V+ ++ ++ GFV F+NEE A A+ +L + ++ V +
Sbjct: 222 IRKTSDKKPQVLFVSEETKDTAK--GFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKN 279
Query: 206 KQERE-----STAD-------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K+ER TA+ K + N+YV L E+ TE ++++ GE G I S ++ R
Sbjct: 280 KEERRREWKAKTAEVKANIKGKYKDFNLYVDTLKESITEKEIREGLGEEGEIYSLSI-RW 338
Query: 254 ADGKSKCFGFVNFDDPDDAARSV 276
D K ++ + + A ++
Sbjct: 339 VDRKPTGVAYLCYTTAEGANNAI 361
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 43/311 (13%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
+ TI SG N N+ S+ + + + F T ++S V + ++
Sbjct: 20 NKTIFVSGLTN----NVTDSLLSSVVMEKFPT--EVVSIHVTKNESHFDTPIAYINMSTH 73
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
++AK I LNG++++ K + + L K ++ T +T N++VKN+ ++ + +L+ +
Sbjct: 74 DAAKRVISTLNGVMVDGKPINMFWAL-KDFKQRTDTQT---NLFVKNIKKSVNQKELQDV 129
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F G S + + G+S FG+V + R++EA Q
Sbjct: 130 FSAIGETLSVKLSLNEKGESNGFGYVKY-------RTLEA---------------TQAAL 167
Query: 299 EREMELKGKF-EQSLK----ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI--TSC 351
++ ELK K E++ E +K NLYV N+D +++++ + F FG I TS
Sbjct: 168 DKSDELKAKIGEETFVVQKFEKQNKSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSD 227
Query: 352 K----VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARL 407
K + GFV F E+A+KA++ ++ + + VA + KEERR
Sbjct: 228 KKPQVLFVSEETKDTAKGFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERRREW 287
Query: 408 QAQFSQMRPPV 418
+A+ ++++ +
Sbjct: 288 KAKTAEVKANI 298
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 199 FVGPFLRKQEREST--ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
FVG F ++ERE + +F NVY+KN E T++ LK++F FG S VM+D G
Sbjct: 1 FVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERG 60
Query: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
+S+ FGFVNF DA ++V+ +NG + + K YVG+AQK+ ER+ ELK KFE ++
Sbjct: 61 RSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRI 120
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
+++G+NLYVKNLDD I D++L++ F+ +GTITS KV
Sbjct: 121 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKV 157
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKN + ++ L + FS FG LS +V D G+SRG+GFV F + A+ A+D++
Sbjct: 24 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEM 83
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFN-------------NVYVKNLSETTTEDDL 235
NG LN K ++VG ++ ER+ K +F N+YVKNL + ++ L
Sbjct: 84 NGTELNGKVIYVGRAQKRLERQGEL-KRKFELIKQDRIQRYQGVNLYVKNLDDGIDDERL 142
Query: 236 KKIFGEFGIITSTAV 250
+K F +G ITS V
Sbjct: 143 RKEFAPYGTITSAKV 157
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 10/122 (8%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG + + ERE EL K +LK T N+Y+KN + +D+KLKE+FS FG
Sbjct: 1 FVGNFKSRKEREEELGSK---ALKFT-------NVYIKNFGEDYTDEKLKEVFSAFGRTL 50
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S +VM+D G SRG GFV F+ +A KA+ EMNG + K +YV AQ++ ER+ L+
Sbjct: 51 SVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKR 110
Query: 410 QF 411
+F
Sbjct: 111 KF 112
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 17/141 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++Y+ + D +L ++F+ G+ +SVRV +D RS G+G+VN+ +A +A+D
Sbjct: 23 TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHGDAQKAVD 81
Query: 100 ELNFTPLNGKPI----------------RIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
E+N T LNGK I R + I++ N+++KNLD ID++
Sbjct: 82 EMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDER 141
Query: 144 LHDTFSTFGNILSCKVATDSL 164
L F+ +G I S KV L
Sbjct: 142 LRKEFAPYGTITSAKVPQRRL 162
>gi|410074177|ref|XP_003954671.1| hypothetical protein KAFR_0A00980 [Kazachstania africana CBS 2517]
gi|372461253|emb|CCF55536.1| hypothetical protein KAFR_0A00980 [Kazachstania africana CBS 2517]
Length = 642
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 182/386 (47%), Gaps = 44/386 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T L++G L V +S L +LFN+ + SV++C D T++SLGYGY+N++ + E R ++
Sbjct: 95 TPLFIGGLGPHVTESMLKELFNKFSSLYSVKICYDSETKKSLGYGYLNFSGSDEIDRVIE 154
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILS 156
E N+T + G I+IM S R+ RK+ NIF NL + + + +DTF +G ILS
Sbjct: 155 EFNYTEVFGSEIKIMPSLRNSLYRKNIGTNIFFSNLPLENSELTTRVFYDTFKKYGKILS 214
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK--------QE 208
CK L + GFV +++++ A+ I+K N ++ G K ++
Sbjct: 215 CK-----LDHRKNIGFVYYEDDKVAREVIEKYNNTTFFGAKILCGLHFDKELRNFPDFEK 269
Query: 209 RESTADK------------------TRF-------NNVYVKNLSETTTEDDLKKIFGEFG 243
R+S DK T+ N V+VKNL TTED++ F G
Sbjct: 270 RKSYLDKHIILEDELNTVEGKTSMLTKIKSSLPHPNAVFVKNLPIDTTEDEILDFFSVVG 329
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
+ S + KS+ + F+ + D R++E L+GKK+ D++ V KA+ + ++
Sbjct: 330 PVKSVFTSKVLKFKSE-WAFITYKKGSDTERAIEELDGKKYKDRKISVTKAKARQQQHHH 388
Query: 304 LKGKFEQSLKETADKFEG-LNLYVKNLDDSISDDKLKEL-FSEFGTITSCKVMRDPNGIS 361
+ + +Q + K + + NL + + L EL E K+
Sbjct: 389 HQQQQQQQQQPIVKKASTKTTIQLNNLSTICTKEFLVELCIQEHLKFDRLKITEYEPDSG 448
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
GF F T ++A K +NGK+V
Sbjct: 449 TFKGFATFKTKDDAKKFYNYLNGKLV 474
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 168/351 (47%), Gaps = 66/351 (18%)
Query: 122 IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181
++K GN++++ L + + L FS +G ++SCK+ D G S+GYGF+ F + A
Sbjct: 89 LKKQLPGNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEA 148
Query: 182 KSAIDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
+ AID LNG+ ++ +FV + K++R E K ++ N+YVKN + T++ L ++F
Sbjct: 149 QKAIDNLNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVF 208
Query: 240 GEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY---VGKAQK 296
G++G + S + + ++ + F+NF +DA R+ E L+G F+ Y +GKA++
Sbjct: 209 GQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDG--FEIAPGYRLQLGKAER 266
Query: 297 KYEREMELKGKF------------------------------EQSLKETAD-------KF 319
+ +R + + +L TA ++
Sbjct: 267 RKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQY 326
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-------------------NGI 360
+ NLY+ +L D L ELF+ FG I S K+M P G
Sbjct: 327 QDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGR 386
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMV-VSKPLYVALAQRKEER--RARLQ 408
SRG GFV F+ +ASKAL MNG V S L V+ AQRKE + + RL
Sbjct: 387 SRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLH 437
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 12/218 (5%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YV+ L TTT DDL +IF +G + S ++ D G SK +GF+NF D +A ++++ L
Sbjct: 96 NLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEAQKAIDNL 155
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
NG D +V K +R EL+ + K + NLYVKN D ++ +KL
Sbjct: 156 NGVNVDGNHLFVNHHISKRDRLKELEMR----------KLKYTNLYVKNFPDDLTKEKLA 205
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
++F ++G + S + + +RG F+ F + E+A +A ++G + P Y +
Sbjct: 206 QVFGQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDGFEIA--PGYRLQLGK 263
Query: 400 KEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLF 437
E R+ R+Q Q + +P P P Y P P L+
Sbjct: 264 AERRKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLY 301
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 142/346 (41%), Gaps = 79/346 (22%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L + L +F++ G +VS ++ D S GYG++N+ EA +A+D
Sbjct: 96 NLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYD-DFGVSKGYGFINFADRIEAQKAIDN 154
Query: 101 LNFTPLNGKPIRIMY--SYRDP----TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
LN ++G + + + S RD +RK N+++KN + + L F +G++
Sbjct: 155 LNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDV 214
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-------------------LLND 195
S + + +RGY F+ F + E A A + L+G + N
Sbjct: 215 ESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDGFEIAPGYRLQLGKAERRKDRMQNQ 274
Query: 196 KQVFVGPFLRKQERESTADKTRFNNVYV-------KNLSETTT----------------- 231
+ +L Q + NN+Y NL T T
Sbjct: 275 MNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQYQDSNLYII 334
Query: 232 -------EDDLKKIFGEFGIITSTAVM-------------------RDADGKSKCFGFVN 265
+ DL ++F FG I S +M + +G+S+ FGFV
Sbjct: 335 HLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRGFGFVC 394
Query: 266 FDDPDDAARSVEALNGKKFDDKE-WYVGKAQKKYEREMELKGKFEQ 310
F+ P DA++++ ++NG + DD V AQ+K E + E KG+
Sbjct: 395 FNKPLDASKALVSMNGYRVDDSHVLEVSFAQRK-ENKFE-KGRLHH 438
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT----DSL---------------GQSRG 169
N++I +L ++ L++ F+ FG I+S K+ T DS G+SRG
Sbjct: 330 NLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRG 389
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK-TRFNNVYVKNLSE 228
+GFV F+ A A+ +NG ++D V F +++E + + +N ++ N
Sbjct: 390 FGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLHHYNQNHLGNFYN 449
Query: 229 TTTEDDLKKIF 239
++ K+ F
Sbjct: 450 YLNQNFTKRSF 460
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 19 SPATNGIANNGGVGDA-RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC----- 72
SP +N I+ G+ A Q+ ++LY+ L L D LY+LF GQ++S ++
Sbjct: 307 SPDSNLISTATGLPIAGPQYQDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPN 366
Query: 73 ---------RDLSTR----RSLGYGYVNYNAAHEATRALDELN 102
D ++ RS G+G+V +N +A++AL +N
Sbjct: 367 DSAVIDEGEEDTESKSREGRSRGFGFVCFNKPLDASKALVSMN 409
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 289 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 348
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G+ + + + + P+ +++ +++ NL S++
Sbjct: 349 RCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 407
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 408 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 467
Query: 201 --------GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+ T + +N+YV N+ + L ++F FG IT V+
Sbjct: 468 SGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVA 527
Query: 253 DADG-KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
D D +K +GF+ F D + A +++ A+NG + V R L S
Sbjct: 528 DPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASIS 579
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
+T LY+ NL S++ DK+ LF+ FG IT KV+ ++ V ++
Sbjct: 580 AVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYAD 632
Query: 372 AEEASKALTEMNGKMVVSKPLYV 394
A A KA+ M+G MV K L V
Sbjct: 633 APSAIKAVQHMDGYMVEGKRLVV 655
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 183/393 (46%), Gaps = 40/393 (10%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 394 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 453
Query: 102 NFTPLNGKPIRIMYS----------YRDP----TIRKSGAGNIFIKNLDKSIDNKALHDT 147
N ++G+ I + S P T+++ N+++ N+ SID K L +
Sbjct: 454 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVEL 513
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-----G 201
F FG I +V D ++GYGF++F + ESA AI +NG L+ + + V
Sbjct: 514 FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLS 573
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
P ++T D + + +Y+ NL + T D + +F FG IT + + +
Sbjct: 574 PSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------Y 625
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
V + D A ++V+ ++G + K V +++ + GK +KE +
Sbjct: 626 SLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK---PIKE----IDM 678
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
NLYV + S+++D+ +LF FG + ++ R + G V F A+ A+
Sbjct: 679 ANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDH 733
Query: 382 MNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
++G + L V +A E A A SQM
Sbjct: 734 LDGYQIGGSILAVRVAGLPAESNAAKGALTSQM 766
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 175/391 (44%), Gaps = 36/391 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 554 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 613
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 614 GQITKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV-----KRSELC 661
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 662 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 716
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 717 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 776
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 777 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 836
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
MNG + L V +A + + A F
Sbjct: 837 HMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 867
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
+FDD++ ++ K Q+ G LKE + NLYV NL S+ KL ELF
Sbjct: 265 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKEV----DNTNLYVGNLPASVGSHKLIELF 317
Query: 343 SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FG I +V+ D G+S+G GFV +S AS+A+ MNG++V + L V +A
Sbjct: 318 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVA 373
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 185/394 (46%), Gaps = 47/394 (11%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 285 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 344
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G +++ + + P+ +++ +++ NL S++
Sbjct: 345 RCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 403
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 404 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 463
Query: 201 -------------GPFLRKQERESTADKTR------FNNVYVKNLSETTTEDDLKKIFGE 241
P + + TR +N+YV N+ + L ++F
Sbjct: 464 SGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLP 523
Query: 242 FGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG IT V+ D D +K +GF+ F D + A +++ A+NG + V R
Sbjct: 524 FGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------R 575
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
L S +T LY+ NL S++ DK+ LF+ FG IT KV+ +
Sbjct: 576 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----M 628
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ V ++ A A+KA+ M+G MV K L V
Sbjct: 629 NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 662
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 183/404 (45%), Gaps = 51/404 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 390 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 449
Query: 102 NFTPLNGKPIRIMYS----------YRDPTIRKSGA---------------GNIFIKNLD 136
N ++G+ I + S P+ ++ A N+++ N+
Sbjct: 450 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMP 509
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
SID K L + F FG I +V D ++GYGF++F + ESA AI +NG L+
Sbjct: 510 SSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGG 569
Query: 196 KQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+ + V P ++T D + + +Y+ NL + T D + +F FG IT +
Sbjct: 570 EMIIVRVAGLSPSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLM 628
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ + V + D A ++V+ ++G + K V +++ + GK
Sbjct: 629 NLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK--- 678
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+KE + NLYV + S+++D+ +LF FG + ++ R + G V F
Sbjct: 679 PIKE----IDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFD 729
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
A+ A+ ++G + L V +A E A A SQM
Sbjct: 730 NPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQM 773
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 175/391 (44%), Gaps = 36/391 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 561 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 620
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 621 GQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV-----KRSELC 668
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 669 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 723
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 724 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 783
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 784 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 843
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
MNG + L V +A + + A F
Sbjct: 844 HMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 874
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 36/383 (9%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 201 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 260
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G+ + + + + P+ +++ +++ NL S++
Sbjct: 261 RCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 319
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 320 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 379
Query: 201 --------GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
+ T + +N+YV N+ + L ++F FG IT V+
Sbjct: 380 SGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVA 439
Query: 253 DADG-KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQS 311
D D +K +GF+ F D + A +++ A+NG + V R L S
Sbjct: 440 DPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASIS 491
Query: 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371
+T LY+ NL S++ DK+ LF+ FG IT KV+ ++ V ++
Sbjct: 492 AVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYAD 544
Query: 372 AEEASKALTEMNGKMVVSKPLYV 394
A A KA+ M+G MV K L V
Sbjct: 545 APSAIKAVQHMDGYMVEGKRLVV 567
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 183/393 (46%), Gaps = 40/393 (10%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 306 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 365
Query: 102 NFTPLNGKPIRIMYS----------YRDP----TIRKSGAGNIFIKNLDKSIDNKALHDT 147
N ++G+ I + S P T+++ N+++ N+ SID K L +
Sbjct: 366 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVEL 425
Query: 148 FSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-----G 201
F FG I +V D ++GYGF++F + ESA AI +NG L+ + + V
Sbjct: 426 FLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLS 485
Query: 202 PFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
P ++T D + + +Y+ NL + T D + +F FG IT + + +
Sbjct: 486 PSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------Y 537
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
V + D A ++V+ ++G + K V +++ + GK +KE +
Sbjct: 538 SLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK---PIKE----IDM 590
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
NLYV + S+++D+ +LF FG + ++ R + G V F A+ A+
Sbjct: 591 ANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDH 645
Query: 382 MNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
++G + L V +A E A A SQM
Sbjct: 646 LDGYQIGGSILAVRVAGLPAESNAAKGALTSQM 678
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 175/391 (44%), Gaps = 36/391 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 406 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 465
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 466 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 525
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 526 GQITKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV-----KRSELC 573
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 574 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 628
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 629 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 688
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 689 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 748
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
MNG + L V +A + + A F
Sbjct: 749 HMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 779
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
+FDD++ ++ K Q+ G LKE + NLYV NL S+ KL ELF
Sbjct: 177 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKEV----DNTNLYVGNLPASVGSHKLIELF 229
Query: 343 SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FG I +V+ D G+S+G GFV +S AS+A+ MNG++V + L V +A
Sbjct: 230 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVA 285
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A+ + A + + + Q T+LYV L VN+ +L DLF GQ+ +V +
Sbjct: 665 AESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVER 724
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
T S G+G+V + A+ A AL +N PL+G + +
Sbjct: 725 YTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 762
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 185/394 (46%), Gaps = 47/394 (11%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 288 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 347
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G+ + + + + P+ +++ +++ NL S++
Sbjct: 348 RCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 406
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 407 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 466
Query: 201 -------------GPFLRKQERESTADKTR------FNNVYVKNLSETTTEDDLKKIFGE 241
P + + TR +N+YV N+ + L ++F
Sbjct: 467 SGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLP 526
Query: 242 FGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG IT V+ D D +K +GF+ F D + A +++ A+NG + V R
Sbjct: 527 FGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------R 578
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
L S +T LY+ NL S++ DK+ LF+ FG IT KV+ +
Sbjct: 579 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----M 631
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ V ++ A A+KA+ M+G MV K L V
Sbjct: 632 NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 665
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 183/404 (45%), Gaps = 51/404 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 393 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 452
Query: 102 NFTPLNGKPIRIMYS----------YRDPTIRKSGA---------------GNIFIKNLD 136
N ++G+ I + S P+ ++ A N+++ N+
Sbjct: 453 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMP 512
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
SID K L + F FG I +V D ++GYGF++F + ESA AI +NG L+
Sbjct: 513 SSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGG 572
Query: 196 KQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+ + V P ++T D + + +Y+ NL + T D + +F FG IT +
Sbjct: 573 EMIIVRVAGLSPSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLM 631
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ + V + D A ++V+ ++G + K V +++ + GK
Sbjct: 632 NLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK--- 681
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+KE + NLYV + S+++D+ +LF FG + ++ R + G V F
Sbjct: 682 PIKE----IDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFD 732
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
A+ A+ ++G + L V +A E A A SQM
Sbjct: 733 NPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQM 776
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 175/391 (44%), Gaps = 36/391 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 504 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 563
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 564 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 623
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 624 GQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV-----KRSELC 671
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 672 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 726
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 727 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 786
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 787 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 846
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
MNG + L V +A + + A F
Sbjct: 847 HMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 877
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
+FDD++ ++ K Q+ G LKE + NLYV NL S+ KL ELF
Sbjct: 264 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKEV----DNTNLYVGNLPASVGSHKLIELF 316
Query: 343 SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FG I +V+ D G+S+G GFV +S AS+A+ MNG++V + L V +A
Sbjct: 317 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVA 372
>gi|297791101|ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309270|gb|EFH39694.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 87/115 (75%), Gaps = 5/115 (4%)
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
DD + L E T T+ + + +SRGSGFVAFST EEAS+A+TEMNGKM+V+KPLYV
Sbjct: 84 DDNVPSLIEEVITTTTHRSL----SLSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYV 139
Query: 395 ALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQ 448
ALAQRKE+ +ARLQ + M P VGPRM MYPP P +GQQLFYGQGPP +IPPQ
Sbjct: 140 ALAQRKEDCKARLQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPPQ 194
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V V ++ T +D++ + E +IT+T + S+ GFV F P++A+R++ +N
Sbjct: 73 VRVIKVARTYRDDNVPSLIEE--VITTTT--HRSLSLSRGSGFVAFSTPEEASRAITEMN 128
Query: 281 GKKFDDKEWYVGKAQKKYEREMELK 305
GK K YV AQ+K + + L+
Sbjct: 129 GKMIVTKPLYVALAQRKEDCKARLQ 153
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 163 SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
SL SRG GFV F E A AI ++NG ++ K ++V RK++
Sbjct: 102 SLSLSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRKED 147
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 151/277 (54%), Gaps = 19/277 (6%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++V +L +V L LF++ G V++V L + + Y +V++ EA A+ +
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVI----LKQKPTSCYAFVDFTLQEEAETAVRDF 71
Query: 102 NFTPLNGKPIRIMYSYRDPTIR--KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N+T LNG+ I I+ P + SG GN+FIK LD+SID LH+ F+ +G I+SC++
Sbjct: 72 NYTKLNGETI-IVTRTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCRI 130
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD----- 214
T + GQ RG+G+VQF +E A+ A+ +L +N K + +GPFL++ ER +A
Sbjct: 131 PTLN-GQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPLSAAFQNNL 189
Query: 215 KTRFNNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
+ F NV+VKNL + T L ++F EFG +TS ++ + + G+V + + A
Sbjct: 190 DSSFTNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVMMSEHEAAV 244
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
R+V L G+ K V ++ ER +K E+
Sbjct: 245 RAVVGLCGRTIFGKRLSVCRSLSPAERANFIKKPIEE 281
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 20/275 (7%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I + NL ++ + L FS G +++ + + Y FV F +E A++A+ N
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVILKQKP---TSCYAFVDFTLQEEAETAVRDFN 72
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LN + + V R +A + N+++K L E+ L ++F +G I S
Sbjct: 73 YTKLNGETIIV---TRTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCR 129
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
+ +G+ + FG+V F +DA +++ L + K +G K+ ER L F+
Sbjct: 130 I-PTLNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERP--LSAAFQ 186
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDD-KLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
+L + N++VKNL D+I+ L LF EFG +TS +++ + R G+V
Sbjct: 187 NNLDSSF-----TNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVM 236
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
S E A +A+ + G+ + K L V + ER
Sbjct: 237 MSEHEAAVRAVVGLCGRTIFGKRLSVCRSLSPAER 271
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N ++V NL T T + LK +F E G + + + + + C+ FV+F ++A +V
Sbjct: 14 NGIHVANLPPTVTVEFLKSLFSEAGTVINVILKQKP---TSCYAFVDFTLQEEAETAVRD 70
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGL-----NLYVKNLDDSI 333
N K + + V + TA + NL++K LD+SI
Sbjct: 71 FNYTKLNGETIIVTRT--------------------TAPVVSAISSGQGNLFIKGLDESI 110
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+L ELF+ +G I SC++ NG RG G+V F E+A A+ E+ V KP+
Sbjct: 111 DCLQLHELFANYGEIVSCRIPTL-NGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQ 169
Query: 394 VALAQRKEER 403
+ ++ ER
Sbjct: 170 IGPFLKRSER 179
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++ LD S++ QL++LF G++VS R+ R G+GYV + +A A+ E
Sbjct: 100 NLFIKGLDESIDCLQLHELFANYGEIVSCRIPTLNGQPR--GFGYVQFLKQEDAEHAMKE 157
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGA---------GNIFIKNLDKSIDN-KALHDTFST 150
L + +NGKPI+I + S A N+F+KNL +I+ +L F
Sbjct: 158 LADSTVNGKPIQIGPFLKRSERPLSAAFQNNLDSSFTNVFVKNLPDNINTLLSLLRLFHE 217
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
FG++ S ++ + R G+V E+A A+ L G + K++ V L ER
Sbjct: 218 FGDVTSARIVPE-----RHIGYVMMSEHEAAVRAVVGLCGRTIFGKRLSVCRSLSPAER 271
>gi|14318545|ref|NP_116678.1| Pes4p [Saccharomyces cerevisiae S288c]
gi|1172434|sp|P39684.2|PES4_YEAST RecName: Full=Protein PES4; AltName: Full=DNA polymerase epsilon
suppressor 4
gi|836778|dbj|BAA09262.1| DNA polymerase epsilon suppressor 4 [Saccharomyces cerevisiae]
gi|151940784|gb|EDN59171.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345636|gb|EDZ72395.1| YFR023Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256268849|gb|EEU04202.1| Pes4p [Saccharomyces cerevisiae JAY291]
gi|259146215|emb|CAY79474.1| Pes4p [Saccharomyces cerevisiae EC1118]
gi|285811918|tpg|DAA12463.1| TPA: Pes4p [Saccharomyces cerevisiae S288c]
gi|392299695|gb|EIW10788.1| Pes4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 611
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 184/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + + D+ ++++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SGF+ F E+A++ +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 134/308 (43%), Gaps = 37/308 (12%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L F + + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K++ + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTKVNGKEIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S + D GFV F+D A ++ N F K+ G K R +
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 303 ---------ELKGKFEQSLKETADK---FEGLNLY--------VKNLDDSISDDKLKELF 342
E + EQSL E K E N+Y +KNL + D + F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
SE G I S + + + FV + + ++ KA+ N K L V AQ KEE
Sbjct: 324 SEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 RRARLQAQ 410
R +++Q
Sbjct: 383 RAKFIESQ 390
>gi|190406596|gb|EDV09863.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 611
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 184/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + + D+ ++++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SGF+ F E+A++ +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 134/308 (43%), Gaps = 37/308 (12%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L F + + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K++ + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTKVNGKEIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S + D GFV F+D A ++ N F K+ G K R +
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 303 ---------ELKGKFEQSLKETADK---FEGLNLY--------VKNLDDSISDDKLKELF 342
E + EQSL E K E N+Y +KNL + D + F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
SE G I S + + + FV + + ++ KA+ N K L V AQ KEE
Sbjct: 324 SEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 RRARLQAQ 410
R +++Q
Sbjct: 383 RAKFIESQ 390
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 185/394 (46%), Gaps = 47/394 (11%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF GQ+V RV D T S GYG+V Y+
Sbjct: 201 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDP 260
Query: 92 HEATRALDELNFTPLNGKPIRIMYS--------YRDPTIRKSGAGNIFIKNLDKSIDNKA 143
A+ A+ +N + G +++ + + P+ +++ +++ NL S++
Sbjct: 261 RCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDR 319
Query: 144 LHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV-- 200
L F FG + + KVA D + G S+GYGFVQ+ + A A+ LNG L++ +++ V
Sbjct: 320 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 379
Query: 201 -------------GPFLRKQERESTADKTR------FNNVYVKNLSETTTEDDLKKIFGE 241
P + + TR +N+YV N+ + L ++F
Sbjct: 380 SGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLP 439
Query: 242 FGIITSTAVMRDADG-KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
FG IT V+ D D +K +GF+ F D + A +++ A+NG + V R
Sbjct: 440 FGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------R 491
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
L S +T LY+ NL S++ DK+ LF+ FG IT KV+ +
Sbjct: 492 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----M 544
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
+ V ++ A A+KA+ M+G MV K L V
Sbjct: 545 NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 578
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 183/404 (45%), Gaps = 51/404 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +L LS+N +L LF G+V + +V +D +T S GYG+V Y++ H A A+ L
Sbjct: 306 LYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHL 365
Query: 102 NFTPLNGKPIRIMYS----------YRDPTIRKSGA---------------GNIFIKNLD 136
N ++G+ I + S P+ ++ A N+++ N+
Sbjct: 366 NGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMP 425
Query: 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
SID K L + F FG I +V D ++GYGF++F + ESA AI +NG L+
Sbjct: 426 SSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGG 485
Query: 196 KQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
+ + V P ++T D + + +Y+ NL + T D + +F FG IT +
Sbjct: 486 EMIIVRVAGLSPSASISAVQTTQDINK-SRLYITNLPRSMTADKMVNLFAPFGQITKVLM 544
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+ + V + D A ++V+ ++G + K V +++ + GK
Sbjct: 545 NLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGK--- 594
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
+KE + NLYV + S+++D+ +LF FG + ++ R + G V F
Sbjct: 595 PIKE----IDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFD 645
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
A+ A+ ++G + L V +A E A A SQM
Sbjct: 646 NPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQM 689
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 175/391 (44%), Gaps = 36/391 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++LYV ++ S++ +L +LF G++ RV D T + GYG++ + + AT+A+
Sbjct: 417 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 476
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIKNLDKSIDNKALHDTFSTF 151
+N + G+ I + + P+ S ++I NL +S+ + + F+ F
Sbjct: 477 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 536
Query: 152 GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
G I + + Y V + + SA A+ ++G ++ K++ V K+
Sbjct: 537 GQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVV-----KRSELC 584
Query: 212 TADKTR----------FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261
T + ++ N+YV + + TED +F FG + + R + +
Sbjct: 585 TTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRY 639
Query: 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEG 321
G V FD+P AA +++ L+G + V A E Q + +
Sbjct: 640 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM 699
Query: 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALT 380
NLYV +L +++++L +LF G IT KV+ + G+S+G GFV F+ A A+ ALT
Sbjct: 700 TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT 759
Query: 381 EMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
MNG + L V +A + + A F
Sbjct: 760 HMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 790
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A+ + A + + + Q T+LYV L VN+ +L DLF GQ+ +V +
Sbjct: 676 AESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVER 735
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113
T S G+G+V + A+ A AL +N PL+G + +
Sbjct: 736 YTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 773
>gi|403164939|ref|XP_003324991.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165464|gb|EFP80572.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 449
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 145/284 (51%), Gaps = 10/284 (3%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQV--VSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
V S++VGDL S+ Q+ +F+Q+ + +S+R R + ++ Y YV Y++A +A+
Sbjct: 171 VDHSVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDAS 230
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
A+ E N T GKP R++ D ++ + NI++ L S+ A HDTFS FG IL
Sbjct: 231 TAIREFNQTVFEGKPCRVVRVQHD-DLKSNKEANIYVGGLPPSLTGVAFHDTFSEFGEIL 289
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK 215
S K+ + S +GF+Q+ E A+ AI K NG L+ K P + E A
Sbjct: 290 SSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTNGATLDMKDS-TRP-ISTSLFEGQAKP 347
Query: 216 TR---FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272
R F+NVY KN+ + T + EFG TST + +DADGK GF NF + +DA
Sbjct: 348 PRQPPFHNVYFKNIPKDITRRCFDQFCEEFGPTTSTFLKKDADGKPMGIGFANFSNTNDA 407
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETA 316
+ VE + +++ + +A + ER + ++ K A
Sbjct: 408 VKIVEYI--RQYAPMGLHAARAYTRGERNRYQSRRVPKTAKAQA 449
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 121/277 (43%), Gaps = 25/277 (9%)
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA--- 160
TPLN P + ++ R ++ S +F+ +L SI ++ + FS IL +
Sbjct: 155 TPLNHFPPQ--HASRTTSVDHS----VFVGDLPGSITHEQIVKVFSQVSPILKISIRYPR 208
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
+ ++ + R Y +V + + E A +AI + N + K V +R Q + ++K N
Sbjct: 209 SQAIKKLRAYAYVTYHSAEDASTAIREFNQTVFEGKPCRV---VRVQHDDLKSNKE--AN 263
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
+YV L + T F EFG I S+ ++ + S FGF+ + ++A +++ N
Sbjct: 264 IYVGGLPPSLTGVAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTN 323
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
G D K+ + +E Q+ F N+Y KN+ I+ +
Sbjct: 324 GATLDMKDSTRPISTSLFE---------GQAKPPRQPPFH--NVYFKNIPKDITRRCFDQ 372
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
EFG TS + +D +G G GF FS +A K
Sbjct: 373 FCEEFGPTTSTFLKKDADGKPMGIGFANFSNTNDAVK 409
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM---RDADGKSKCFGFVNFDDPDDAARS 275
++V+V +L + T + + K+F + I ++ A K + + +V + +DA+ +
Sbjct: 173 HSVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDASTA 232
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+ N F+ K V + Q +LK E N+YV L S++
Sbjct: 233 IREFNQTVFEGKPCRVVRVQHD-----DLKSNKEA------------NIYVGGLPPSLTG 275
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
+ FSEFG I S K++ +P +S GF+ ++TAEEA A+ + NG
Sbjct: 276 VAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTNG 324
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 90/114 (78%), Gaps = 1/114 (0%)
Query: 300 REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG 359
R+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G
Sbjct: 1 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GG 59
Query: 360 ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 60 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 113
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 216 TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FGFV F P++A
Sbjct: 18 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEAT 76
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 77 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 115
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 82
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER++ N Y++ ++
Sbjct: 83 NGRIVATKPLYVALAQRKEERQA-----HLTNQYMQRMA 116
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 19 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 76
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 77 KAVTEMNGRIVATKPLYVALAQR 99
>gi|452239|dbj|BAA05461.1| PES4 PAB-like protein [Saccharomyces cerevisiae]
Length = 555
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 184/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L +F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCIDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + + D+ ++++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SGF+ F E+A++ +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 134/308 (43%), Gaps = 37/308 (12%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L F + + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCIDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K++ + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTKVNGKEIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S + D GFV F+D A ++ N F K+ G K R +
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 303 ---------ELKGKFEQSLKETADK---FEGLNLY--------VKNLDDSISDDKLKELF 342
E + EQSL E K E N+Y +KNL + D + F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
SE G I S + + + FV + + ++ KA+ N K L V AQ KEE
Sbjct: 324 SEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 RRARLQAQ 410
R +++Q
Sbjct: 383 RAKFIESQ 390
>gi|320581163|gb|EFW95384.1| poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 716
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 169/350 (48%), Gaps = 54/350 (15%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
TSL+VGDLD S+++ L ++FN+ ++SV++ D T SLGYGYVNY+ +A A++
Sbjct: 180 TSLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAME 239
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN+T + IRIM S RD + R+ N+F+ NL + + L+D F GN+LSCK
Sbjct: 240 SLNYTTIGSSEIRIMPSLRDKSQRERIGANVFLSNLSSHLTTRQLYDRFRKHGNVLSCKY 299
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE--------- 210
+ S+ F+ F+++E A + N L+ + V+VG + K++RE
Sbjct: 300 DS-----SKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELFGATASAS 354
Query: 211 ----------------STADKTRFNN-------VYVKNLSETTTEDDLKKIFGEFGIITS 247
T T+ N ++V+NL E +K + +G + S
Sbjct: 355 SKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIKSLVEPYGPVLS 414
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA----QKKYEREME 303
+ R K+ C+ V + + ++V LN + + ++ +V +A +K Y R+ E
Sbjct: 415 -VLARKVPKKNGCWALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEEKSYSRKQE 473
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353
++ K++ L + + L+ + DK + FG+I S ++
Sbjct: 474 VQPKYK------------LKILITGLNVNTHKDKFQNWCLTFGSIKSVEL 511
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 41/311 (13%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDK 187
++F+ +LDKS+ L + F+ + +LS K+ D G S GYG+V + NE+ A A++
Sbjct: 181 SLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAMES 240
Query: 188 LNGMLLNDKQVFVGPFLR-KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
LN + ++ + P LR K +RE NV++ NLS T L F + G +
Sbjct: 241 LNYTTIGSSEIRIMPSLRDKSQRERIG-----ANVFLSNLSSHLTTRQLYDRFRKHGNVL 295
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM---- 302
S SK F++F+ + A V+ N D + YVG K +RE+
Sbjct: 296 SCKY-----DSSKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELFGAT 350
Query: 303 -----ELKGKFE-----------QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
+L K + Q+ K D +++V+NL +I + +K L +G
Sbjct: 351 ASASSKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIKSLVEPYG 410
Query: 347 TITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE-- 402
+ S + P NG V S E KA++ +N + + L+V A KEE
Sbjct: 411 PVLSVLARKVPKKNGC---WALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEEKS 467
Query: 403 --RRARLQAQF 411
R+ +Q ++
Sbjct: 468 YSRKQEVQPKY 478
>gi|401625916|gb|EJS43897.1| pes4p [Saccharomyces arboricola H-6]
Length = 611
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 185/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L ++F + VS +VC D T++SLG+GY+N++ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK +RIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTEINGKEVRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDSETIIEKEQALNDKKVQRNDGDSKNNLSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + A + F+ + +D+ R+++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSTATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D +
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQMDGYNENSA 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SG++ F E+A++ +N ++V
Sbjct: 434 TYSGYIKFKNFEDATRIFNFLNNRLV 459
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 41/310 (13%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L + F F + +S KV DS+ + S G+G++ FD++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K+V + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTEINGKEVRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG------------- 292
S + D GFV F+D A ++ N F K+ G
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 293 KAQKK-------YEREMELKGKFEQSLKETADKFEGLN-----LYVKNLDDSISDDKLKE 340
+ QK E+E L K Q + D L+ +++KNL + D +
Sbjct: 264 ETQKSRLDSETIIEKEQALNDKKVQ--RNDGDSKNNLSSSQNSIFIKNLPTITTRDDILN 321
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FSE G I S + + F+ + + E++ +A+ N K L VA AQ K
Sbjct: 322 FFSEVGPIKSI-YLSTATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDK 380
Query: 401 EERRARLQAQ 410
EER +++Q
Sbjct: 381 EERAKFIESQ 390
>gi|349577937|dbj|GAA23104.1| K7_Pes4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 611
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 184/386 (47%), Gaps = 59/386 (15%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
L++GDL +V + L ++F + VS +VC D T++SLG+GY+N+ EA +A++EL
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSCK 158
N+T +NGK IRIM S R+ T RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADK 215
L + GFV F++E++A++ I N K++ G K+ R K
Sbjct: 213 -----LDSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 216 TRF--------------------------------NNVYVKNLSETTTEDDLKKIFGEFG 243
+R N++++KNL TT DD+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
I S + +A + FV + + D+ ++++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER--- 383
Query: 304 LKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD--PNGIS 361
KF +S K + L+++NL + + LK L + I K+ D S
Sbjct: 384 --AKFIESQKIST-------LFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMV 387
SG + F E+A++ +N ++V
Sbjct: 434 TYSGLIKFRNFEDATRIFNFLNNRLV 459
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 135/308 (43%), Gaps = 37/308 (12%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+FI +L +++ + L + F + + +S KV DS+ + S G+G++ F+++E A+ A+++L
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNL---SETTTEDDLKKIFGEFGII 245
N +N K++ + P LR +T K NV+ NL + T F +G I
Sbjct: 153 NYTKVNGKEIRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S + D GFV F+D A ++ N F K+ G K R +
Sbjct: 209 LSCKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 303 ---------ELKGKFEQSLKETADK---FEGLNLY--------VKNLDDSISDDKLKELF 342
E + EQSL E K E N+Y +KNL + D + F
Sbjct: 264 ETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
SE G I S + + + FV + + ++ KA+ N K L V AQ KEE
Sbjct: 324 SEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 403 RRARLQAQ 410
R +++Q
Sbjct: 383 RAKFIESQ 390
>gi|324525699|gb|ADY48582.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 121
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 80/102 (78%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ L++ F+ G V+S+RVCRD TRRSLGY YVN+ +A RALD
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNK 142
+NF + GKPIRIM+S RDP++R+SGAGNIFIKNLDKSIDNK
Sbjct: 80 MNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNK 121
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG-QSRGYGFVQFDNEESAKSAID 186
++++ +L + L + FS+ G +LS +V D++ +S GY +V F A+ A+D
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
+N ++ K + + +R+ + ++ N+++KNL ++
Sbjct: 79 TMNFDVMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKS 117
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR---GSGFVAFSTAEEASKAL 379
+LYV +L +++ L E FS G + S +V RD I+R G +V F +A +AL
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADAERAL 77
Query: 380 TEMNGKMVVSKPLYVALAQRKEERR 404
MN ++ KP+ + +QR R
Sbjct: 78 DTMNFDVMYGKPIRIMWSQRDPSMR 102
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
++YV +L TE L + F G + S V RDA +S + +VNF P DA R+++
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
+N K + +Q+ + S++ + N+++KNLD SI +
Sbjct: 80 MNFDVMYGKPIRIMWSQR------------DPSMRRSG----AGNIFIKNLDKSIDN 120
>gi|260656096|pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 80/93 (86%), Gaps = 1/93 (1%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +
Sbjct: 3 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 61
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 62 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 94
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +M
Sbjct: 13 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 71
Query: 383 NGKMVVSKPLYVALAQRKEERRA 405
NG ++ + ++V + ++ER A
Sbjct: 72 NGMLLNDRKVFVGRFKSRKEREA 94
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
K+ N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R
Sbjct: 8 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 66
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREME 303
++E +NG +D++ +VG+ + + ERE E
Sbjct: 67 AIEKMNGMLLNDRKVFVGRFKSRKEREAE 95
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 16/97 (16%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
A PS +G+ N +++ +LD S+++ LYD F+ G ++S +V D
Sbjct: 1 GADPSLRKSGVGN--------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 46
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111
+ S GYG+V++ A RA++++N LN + +
Sbjct: 47 ENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 81
>gi|363750089|ref|XP_003645262.1| hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888895|gb|AET38445.1| Hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
Length = 681
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 201/456 (44%), Gaps = 75/456 (16%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++GDLD V + L D FN+ VS ++C D +T++SLGYGY+N++ +A R ++E
Sbjct: 121 ALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNEEDAERVIEE 180
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSC 157
N+ P+ G+ +RIM S R+ RK+ N+F NL + ++ + +D F +G ILSC
Sbjct: 181 FNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLALTTRVFYDAFKKYGKILSC 240
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TAD 214
K L + + GFV F+ + SAK AI + NG + G + R+S
Sbjct: 241 K-----LDRRKNIGFVYFEKDSSAKQAIAEYNGKQFYGNNILCGIHFDRNVRKSPEFEKR 295
Query: 215 KTRF-----------------------------NNVYVKNLSETTTEDDLKKIFGEFGII 245
K R N V++KNL + D L F + G +
Sbjct: 296 KARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKNLPLNSDSDLLLDYFSQIGPV 355
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL- 304
S + + + F+ F DA ++++LN + + + +AQK ++ +++
Sbjct: 356 KSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHSQLLGRTIELSRAQKNFQSDIDAA 414
Query: 305 ---KGKFEQSLKETADKFEG----------LNLYVKNLDDSISDDKLKELFSEFGTITSC 351
G S+K +AD EG L +Y+ +L SI ++ + F I +
Sbjct: 415 NAGTGNTGGSIK-SADS-EGSSSQHNSSYKLTVYLSSL-SSICSEQFLQCFCAEERIKTK 471
Query: 352 KV---MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-------------VSKPLYVA 395
++ D + ++ SGFV T +A++ +N K++ +KP+ A
Sbjct: 472 RISIRFYDEDTLT-FSGFVQCQTRNDANRLFELLNDKLLGDSTVKASWKPSKEAKPINTA 530
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPG 431
+ +LQ + PV R Y AP
Sbjct: 531 VTTVPTASHLKLQQSHKKATTPVNIRREPYIYRAPA 566
>gi|410730871|ref|XP_003980256.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
gi|401780433|emb|CCK73580.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
Length = 611
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 177/387 (45%), Gaps = 60/387 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+T LY+G L V + L++ F + S+++CRD T SLGYGY+N++ + EAT+ +
Sbjct: 100 TTPLYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLI 159
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNIL 155
D+ N+T L G I+IM S R+ RK+ N+F NL +K + + +DTF +G IL
Sbjct: 160 DDYNYTNLFGNEIKIMPSMRNTLYRKNIGTNVFFSNLPLENKQLTTRKFYDTFKKYGEIL 219
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ-------- 207
SCK L + GFV F+N+++A AI N + ++ G K+
Sbjct: 220 SCK-----LDSRKNIGFVYFENDKAALQAIKDYNNKVFFGNKIICGIHFDKEIRTFPDFD 274
Query: 208 --------------ERESTADKTRF-----------NNVYVKNLSETTTEDDLKKIFGEF 242
E E+ + +F N V++KNL TT +D++ F +
Sbjct: 275 KRKSYLDSQLIIEDELEAGGEFLKFKQEPKCIVPHPNAVFIKNLPMTTNDDEILDFFSKI 334
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G + S + S + FV + D +++ L+ F D+ V KA+ K
Sbjct: 335 GPVKSVFASQVLKYNS-LWAFVTYKKSSDTELAIQKLDQTYFKDRAISVTKAKSK----- 388
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG--I 360
K F+ K+T +Y+KNL I +++ E I K+ DP I
Sbjct: 389 --KTNFKIHDKKT--------VYLKNL-SPICNERFIERICLQERIRVQKISVDPISPDI 437
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMV 387
+GFV T +A+K M+ +++
Sbjct: 438 LTNTGFVTCKTEVDANKLFNFMDKRLI 464
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 44/289 (15%)
Query: 98 LDELNFTPLNGK-PIRIMYSYRDPTIR----KSGAGNI-------FIKNLDKSIDNKALH 145
L+E+ F +GK P+ Y +D + K A NI +I L K + + L
Sbjct: 59 LEEIAFVKKDGKLPLHNSYDTKDEKQKFATTKKLAENIKPKTTPLYIGGLSKDVTEETLF 118
Query: 146 DTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
+ F + + S K+ DS+ +S GYG++ F N A ID N L ++ + P +
Sbjct: 119 EAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLIDDYNYTNLFGNEIKIMPSM 178
Query: 205 RKQ-ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263
R R++ F+N+ ++N TT + F ++G I S + K GF
Sbjct: 179 RNTLYRKNIGTNVFFSNLPLENKQLTTRK--FYDTFKKYGEILSCKL-----DSRKNIGF 231
Query: 264 VNFDDPDDAARSVEALNGK---------------------KFDDKEWYVGKAQKKYEREM 302
V F++ A ++++ N K FD ++ Y+ +Q E E+
Sbjct: 232 VYFENDKAALQAIKDYNNKVFFGNKIICGIHFDKEIRTFPDFDKRKSYLD-SQLIIEDEL 290
Query: 303 ELKGKFEQSLKETADKFEGLN-LYVKNLDDSISDDKLKELFSEFGTITS 350
E G+F + +E N +++KNL + +DD++ + FS+ G + S
Sbjct: 291 EAGGEFLKFKQEPKCIVPHPNAVFIKNLPMTTNDDEILDFFSKIGPVKS 339
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 29/232 (12%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+Y+ LS+ TE+ L + F ++ + S + RD+ +S +G++NF + +A + ++
Sbjct: 103 LYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLIDDY 162
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL---DDSISDD 336
N + E+++ +L K G N++ NL + ++
Sbjct: 163 NYTNL-------------FGNEIKIMPSMRNTLYR---KNIGTNVFFSNLPLENKQLTTR 206
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
K + F ++G I SCK+ N GFV F + A +A+ + N K+ + +
Sbjct: 207 KFYDTFKKYGEILSCKLDSRKN-----IGFVYFENDKAALQAIKDYNNKVFFGNKIICGI 261
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQ 448
KE R F + + + ++ + + G G+ L + Q P I P
Sbjct: 262 HFDKE---IRTFPDFDKRKSYLDSQLIIEDELEAG-GEFLKFKQEPKCIVPH 309
>gi|14571727|emb|CAC42820.1| Poly(A)-binding protein cytoplasmic 5 [Mus musculus]
Length = 119
Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats.
Identities = 68/120 (56%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 81 LGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSID 140
LGYGYVN+ +A AL+ +NF +NGKP R+M+S D +RKSG GNIFIKNLDK+ID
Sbjct: 1 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTID 60
Query: 141 NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
N+AL FS FGNILSCKV D G S+GY +V FD+ +A AI +NG+ LN++QV+V
Sbjct: 61 NRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNRQVYV 119
Score = 62.4 bits (150), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320
+G+VNF P DA ++ +N + K + + +Q + L+++
Sbjct: 3 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQP------------DDRLRKSGVG-- 48
Query: 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380
N+++KNLD +I + L LFS FG I SCKV+ D NG S+G +V F + A++A+
Sbjct: 49 --NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 105
Query: 381 EMNGKMVVSKPLYV 394
+NG + ++ +YV
Sbjct: 106 HVNGVRLNNRQVYV 119
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 169 GYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLS 227
GYG+V F A+ A++ +N L+N K PF L + + K+ N+++KNL
Sbjct: 2 GYGYVNFRFPADAEWALNTMNFDLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLD 56
Query: 228 ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
+T L +F FG I S V+ D +G SK + +V+FD A R++ +NG + +++
Sbjct: 57 KTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNR 115
Query: 288 EWYV 291
+ YV
Sbjct: 116 QVYV 119
Score = 41.2 bits (95), Expect = 1.1, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALD 99
++++ +LD ++++ L+ LF+ G ++S + VC D ++ GY YV++++ A RA+
Sbjct: 49 NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIW 105
Query: 100 ELNFTPLNGKPIRI 113
+N LN + + +
Sbjct: 106 HVNGVRLNNRQVYV 119
>gi|50302861|ref|XP_451368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640499|emb|CAH02956.1| KLLA0A08338p [Kluyveromyces lactis]
Length = 766
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 176/381 (46%), Gaps = 45/381 (11%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L++GDL +V + L+++FN+ SV++C D +T++SLGYGY+N+ +A A+D
Sbjct: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILS 156
E N+ P+ G+ IR+M S R+ RK+ N+F NL + + + +D F FG ILS
Sbjct: 198 EYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILS 257
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216
CK L + + GF+ F+N+ +AK AI + NG D + G + R+S +
Sbjct: 258 CK-----LDRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDRNVRKSPEFEQ 312
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N + NL+ ++ M D + V D ++ + V
Sbjct: 313 KINR--INNLT----------------VVKEKLEMEDDNN-------VTTDPSENGKKDV 347
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
A N DD + VG A K E + K + A ++VKNL + S D
Sbjct: 348 VAGNDTDDDDDDKAVGNATKSLVEETNKESKNTKLPHPNA-------IFVKNLPINPSHD 400
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L FS+ G + S D + F+ + ++ A+ ++NG + + + V
Sbjct: 401 NLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTIEV-- 457
Query: 397 AQRKEERRARLQAQFSQMRPP 417
+K ER ++QF P
Sbjct: 458 --KKTERHHLEESQFENNTRP 476
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEE 179
T++ +FI +L ++ LH+ F+ F + S K+ DS +S GYG++ F + +
Sbjct: 131 TMKSEKQTALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPK 190
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQE-RESTADKTRFNNVYVKNLSETTT--EDDLK 236
A++A+D+ N M + +++ + P LR R++ F+N+ + N TT D+ K
Sbjct: 191 DAENAVDEYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFK 250
Query: 237 KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
K FG I S + R K GF+ F++ A +++ NGK+F D G
Sbjct: 251 K----FGKILSCKLDR-----RKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCG---V 298
Query: 297 KYEREMELKGKFEQSL 312
++R + +FEQ +
Sbjct: 299 HFDRNVRKSPEFEQKI 314
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 7/174 (4%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IF+KNL + + L + FS G + S + S S + F+ + + K+AI+KLN
Sbjct: 388 IFVKNLPINPSHDNLLNFFSKIGPVKSVYTSDVSKFDS-SWAFITYKRIQDTKTAIEKLN 446
Query: 190 GMLLNDKQVFVGPFLRKQEREST-ADKTRFNN----VYVKNLSETTTEDDLKKIFGEFGI 244
G + + V R ES + TR NN V++ NLS E+ L + G+ I
Sbjct: 447 GCKYMKRTIEVKKTERHHLEESQFENNTRPNNYKKTVFLTNLSVICNEEFLNFLCGQERI 506
Query: 245 ITSTAVMRDADGKSKCF-GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
T V+R + K+ + G+V +DA R E + K D E Q K
Sbjct: 507 KTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSEVKASWQQPK 560
>gi|400260942|pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
gi|400260943|pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 84/108 (77%), Gaps = 3/108 (2%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G+GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV D G S+GYGFV F+ +E+A+ AI
Sbjct: 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 62
Query: 186 DKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVKNLSETTT 231
+K+NGMLLND++VFVG F ++ERE+ A F NVY+KN +T
Sbjct: 63 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGST 110
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
N+++KNLD SI + L + FS FG I SCKV+ D NG S+G GFV F T E A +A+ +M
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 65
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQ 410
NG ++ + ++V + ++ER A L A+
Sbjct: 66 NGMLLNDRKVFVGRFKSRKEREAELGAR 93
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+++KNL ++ L F FG I S V+ D +G SK +GFV+F+ + A R++E +
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 65
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
NG +D++ +VG+ + + ERE EL + A +F N+Y+KN
Sbjct: 66 NGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNF 105
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S ++++ +LD S+++ LYD F+ G ++S +V D + S GYG+V++ A RA+
Sbjct: 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAI 62
Query: 99 DELNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNL 135
+++N LN + + + + R + GA N++IKN
Sbjct: 63 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNF 105
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 103/180 (57%), Gaps = 3/180 (1%)
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLY 325
F P S L + + + GK+ KK ER+ L+ E+ E K G N+Y
Sbjct: 1 FQKPRKCQESKRGLEWDRSGSENFVRGKSSKKAERKQYLQLLHEEKRNEIITKSNGSNVY 60
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KN+ D + DD L+E F+EFG ITS K+MRD GIS+G GFV +ST +EA A++ M G
Sbjct: 61 IKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSSMRGV 120
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGL---GQQLFYGQGP 442
M KPLYVA+AQRKE+R+ARL+ +F+++ G P+ P P + + QGP
Sbjct: 121 MFYGKPLYVAIAQRKEDRKARLEQRFAELATMAGTASPVIPTGYPHVYFAHPSTHFPQGP 180
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%)
Query: 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
L +++R K+ +NVY+KN+S+ +D L++ F EFG ITS +MRD G SK FG
Sbjct: 41 LLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFG 100
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
FV + PD+A +V ++ G F K YV AQ+K +R+ L+ +F +
Sbjct: 101 FVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQRFAE 148
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
R+ I KS N++IKN+ +D+ L + F+ FGNI S K+ D G S+G+GFV +
Sbjct: 47 RNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYST 106
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ AK A+ + G++ K ++V RK++R++ ++ RF
Sbjct: 107 PDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQ-RF 146
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+++Y+ ++ V+D L + F + G + SV++ RD S G+G+V Y+ EA A+
Sbjct: 57 SNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRD-DKGISKGFGFVCYSTPDEAKCAVS 115
Query: 100 ELNFTPLNGKPIRIMYSYR 118
+ GKP+ + + R
Sbjct: 116 SMRGVMFYGKPLYVAIAQR 134
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 39/203 (19%)
Query: 240 GEFGIITSTAVMRDAD-----GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294
G I+ V ++ D SK +GFV+F+ + A R++E +NG +D++ +VG+
Sbjct: 68 GHARIVGQNWVQKEIDLPNKKNGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 127
Query: 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354
+ + ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM
Sbjct: 128 KSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 177
Query: 355 RDPNGISRGSGFVAF------------------------STAEEASKALTEMNGKMVVSK 390
D +G S+G GFV+F S+ EEA+KA+TEMNG++V +K
Sbjct: 178 TDESGKSKGFGFVSFERHEDAQKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 237
Query: 391 PLYVALAQRKEERRARLQAQFSQ 413
PLYVALAQRKEER+A L Q+ Q
Sbjct: 238 PLYVALAQRKEERQAHLTNQYMQ 260
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 26/172 (15%)
Query: 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRFNNVYVK 224
S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F NVY+K
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 150
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFD----------------- 267
N E ++ LK +FG+FG S VM D GKSK FGFV+F+
Sbjct: 151 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKG 210
Query: 268 -------DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 211 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 262
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 37/186 (19%)
Query: 74 DLSTRR--SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGA--- 127
DL ++ S GYG+V++ A RA++++N LN + + + + R + GA
Sbjct: 83 DLPNKKNGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 142
Query: 128 --GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK--- 182
N++IKN + +D++ L D F FG LS KV TD G+S+G+GFV F+ E A+
Sbjct: 143 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVM 202
Query: 183 ---------------------SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNV 221
A+ ++NG ++ K ++V RK+ER++ N
Sbjct: 203 MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA-----HLTNQ 257
Query: 222 YVKNLS 227
Y++ ++
Sbjct: 258 YMQRMA 263
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 25/108 (23%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 78
A++F T++Y+ + ++D +L DLF + G +SV+V D S +
Sbjct: 141 AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 198
Query: 79 --------RSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
RS G+G+V +++ EAT+A+ E+N + KP+ + + R
Sbjct: 199 QKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 246
>gi|298712686|emb|CBJ48711.1| polyadenylate-binding protein, putative [Ectocarpus siliculosus]
Length = 80
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 71/79 (89%)
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
MRD DGKSKCFGFVNF++ DDAA++VEALNGKK DDKEWYVGKAQKK ERE ELK +FEQ
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
Query: 311 SLKETADKFEGLNLYVKNL 329
S+KETADK++G NLYVKN
Sbjct: 61 SMKETADKYQGANLYVKNF 79
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 354 MRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
MRD +G S+ GFV F A++A+KA+ +NGK V K YV AQ+K ER L+ +F Q
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 12/77 (15%)
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---------- 211
D G+S+ +GFV F+N + A A++ LNG ++DK+ +VG +K ERE+
Sbjct: 3 DMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQSM 62
Query: 212 --TADKTRFNNVYVKNL 226
TADK + N+YVKN
Sbjct: 63 KETADKYQGANLYVKNF 79
>gi|254584953|ref|XP_002498044.1| ZYRO0G00814p [Zygosaccharomyces rouxii]
gi|238940938|emb|CAR29111.1| ZYRO0G00814p [Zygosaccharomyces rouxii]
Length = 654
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/476 (25%), Positives = 213/476 (44%), Gaps = 81/476 (17%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L++GDLD +++ L +F + + SV+VC D T +SLGYGY+N++ + A
Sbjct: 102 TIALFIGDLDEQIDEEILIQIFKKFKSLTSVKVCTDAETGKSLGYGYLNFSRRQDTLAAT 161
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNIL 155
+E N+ P+ GK +RIM S R+ RK+ NIF NL + ++ + +DTF +GNIL
Sbjct: 162 EEFNYRPIFGKEVRIMPSLRNTFYRKNIGTNIFFSNLPLENSNLTTRVFYDTFKVYGNIL 221
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG------------------------- 190
SCK L + + GF+ FDN+ +A+ I + NG
Sbjct: 222 SCK-----LDKRKNIGFIYFDNDHAARVVIKEFNGSEFFGNKILCGIHFDKELRKFPEFE 276
Query: 191 ---MLLND-----KQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGE 241
LND +Q+ +GP K E +ST N ++VKNL + +D++ F
Sbjct: 277 KRKSSLNDITIPKEQLTLGPTDAKTVEHDSTQHLPHPNAIFVKNLPPSCPDDEILDYFSN 336
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G + S +S + FV + D ++V+ +G +F ++ V KA E
Sbjct: 337 LGPVKSVFSSTSHKYESS-WAFVTYKKGSDTNKAVKIYHGAQFKGRKLSVIKA------E 389
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKEL-FSEFGTITSCKVMRDPNGI 360
G + + + + + LY++NL ++ L ++ E I + + +
Sbjct: 390 SARNGHGSYNKQSSKISYRPI-LYLQNLSSVCNEQFLLQMCMEERIKIENLGITDFFHDS 448
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMV------------------VSKP---LYVALAQR 399
SG+V + ++A K L +N +++ S P +Y + Q
Sbjct: 449 FTYSGYVKCKSKKDADKILKLLNNRLIGGCEVKITRKKLNNNNGNSSIPVIDVYHSKNQS 508
Query: 400 KEERRARLQAQFSQ----MRPPVGPRMPMY--PPVAPGLGQQLFYGQGPPIIPPQV 449
K + + Q ++ + P MP+Y P PG G ++Y Q P ++ P++
Sbjct: 509 KSPKHSTYNGLSKQPQVHLQSAIFP-MPIYSAPTPTPGAG-PMYYPQ-PMVLTPKI 561
>gi|255720292|ref|XP_002556426.1| KLTH0H12958p [Lachancea thermotolerans]
gi|238942392|emb|CAR30564.1| KLTH0H12958p [Lachancea thermotolerans CBS 6340]
Length = 639
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 143/293 (48%), Gaps = 42/293 (14%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SL++GDLD V + L F+ + SV++C D T++SLGYGY+N+ +A EA A++
Sbjct: 94 SSLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIE 153
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILS 156
+ ++ L GK +RIM S R+ RK+ N+F NL + ++ + +++F +G +LS
Sbjct: 154 KFSYVKLFGKEVRIMPSMRNSYFRKNIGTNVFFTNLPLENPALTTRVFYESFRKYGRVLS 213
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM----------LLNDKQVFVGPFLRK 206
CK L + + GFV F+++ SAK AID N L DK + P K
Sbjct: 214 CK-----LDRRKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQFEK 268
Query: 207 Q--------------ERESTADK---------TRFNNVYVKNLSETTTEDDLKKIFGEFG 243
+ E E+ D T +V+VKNL +DL F + G
Sbjct: 269 RRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFSKVG 328
Query: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296
I S + AD + +GF+ + D R++E LNG F K V +A K
Sbjct: 329 PIKSVYTSK-ADVYTTSWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRAVK 380
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 31/292 (10%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDK 187
++FI +LDK + K L FS F + S K+ DS +S GYG++ F + + A AI+K
Sbjct: 95 SLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIEK 154
Query: 188 LNGMLLNDKQVFVGPFLRKQE-RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIIT 246
+ + L K+V + P +R R++ F N+ ++N + TT + F ++G +
Sbjct: 155 FSYVKLFGKEVRIMPSMRNSYFRKNIGTNVFFTNLPLENPALTTRV--FYESFRKYGRVL 212
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG-------------- 292
S + R K GFV F+ A ++++ N +++ + G
Sbjct: 213 SCKLDR-----RKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQFE 267
Query: 293 KAQKKYEREMELKGKFE-------QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345
K + K E +K E SL ++ +++VKNL + ++ L FS+
Sbjct: 268 KRRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFSKV 327
Query: 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
G I S + + + GF+ + + + +AL E+NG + + K + V A
Sbjct: 328 GPIKSVYTSK-ADVYTTSWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRA 378
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 28/202 (13%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK-SKCFGFVNFDDPDDAARSV 276
+++++ +L + TE L F F + S + D++ K S +G++NF +A ++
Sbjct: 93 ISSLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAI 152
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL---DDSI 333
E + K KE + + + F +++ G N++ NL + ++
Sbjct: 153 EKFSYVKLFGKEVRIMPSMRN--------SYFRKNI--------GTNVFFTNLPLENPAL 196
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
+ E F ++G + SCK+ R N GFV F + A KA+ + N + +
Sbjct: 197 TTRVFYESFRKYGRVLSCKLDRRKN-----IGFVYFESDISAKKAIDDFNSREYFGNKIA 251
Query: 394 VALAQRKEERRARLQAQFSQMR 415
L K+ R++ QF + R
Sbjct: 252 CGLHFDKDIRKS---PQFEKRR 270
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNYNAAHEATRA 97
STS++V +L + V + L + F+++G + SV + D+ T +G++ Y + + RA
Sbjct: 303 STSVHVKNLPIGVCNEDLLNYFSKVGPIKSVYTSKADVYT---TSWGFITYKRSRDTIRA 359
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
L+ELN GK + + + + RKS + N
Sbjct: 360 LEELNGAIFMGKRVEVTRAVKYNGERKSTSTN 391
>gi|367013040|ref|XP_003681020.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
gi|359748680|emb|CCE91809.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
Length = 622
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 143/295 (48%), Gaps = 43/295 (14%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+L++GDL+ SV ++ L D+F + + SV++C D ++ +SLGYGY+N+ + +A +A +
Sbjct: 97 VALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSEDAEKATE 156
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILS 156
E N+ P+ G+ +RIM S R+ RK+ N+F NL D + + +DTF +G ILS
Sbjct: 157 EFNYRPIEGQEVRIMPSLRNSFYRKNVGTNVFFSNLPLEDSRLTTRVFYDTFKKYGKILS 216
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE------ 210
CK L + + GF+ F+N++SA+ I NG +V G K R+
Sbjct: 217 CK-----LDKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKDFRKYPEFEK 271
Query: 211 ---------------STADKTRF-------------NNVYVKNLSETTTEDDLKKIFGEF 242
+T D + N V+VKNL T +++ F
Sbjct: 272 RISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNEEILDFFSNI 331
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
G + S + A + + FV + D ++S++ N K+F ++ V KA K
Sbjct: 332 GPVKSVFSSK-APKFNSLWAFVTYKRGSDTSKSIQFYNDKEFKNRRLIVSKAVPK 385
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 32/305 (10%)
Query: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEE 179
T+ +FI +L+ S+ L D F F ++ S K+ DS G+S GYG++ F N E
Sbjct: 90 TLESKSVVALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSE 149
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
A+ A ++ N + ++V + P LR R++ F+N+ +++ TT
Sbjct: 150 DAEKATEEFNYRPIEGQEVRIMPSLRNSFYRKNVGTNVFFSNLPLEDSRLTTRV--FYDT 207
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG-KAQKK 297
F ++G I S + K K GF+ F++ A + ++ NGK+F + G K
Sbjct: 208 FKKYGKILSCKL-----DKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKD 262
Query: 298 YEREMELKGKF---------------EQSLKETADKFEGLN------LYVKNLDDSISDD 336
+ + E + + E S K + G ++VKNL +++
Sbjct: 263 FRKYPEFEKRISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNE 322
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
++ + FS G + S + P S + FV + + SK++ N K ++ L V+
Sbjct: 323 EILDFFSNIGPVKSVFSSKAPKFNSLWA-FVTYKRGSDTSKSIQFYNDKEFKNRRLIVSK 381
Query: 397 AQRKE 401
A KE
Sbjct: 382 AVPKE 386
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 25/203 (12%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFV 264
K + ST + +++ +L + TE+ L+ IFG+F +TS + D++ GKS +G++
Sbjct: 84 KSKLSSTLESKSVVALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYL 143
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNL 324
NF + +DA ++ E N + + +E + + L+ F + K G N+
Sbjct: 144 NFANSEDAEKATEEFNYRPIEGQEVRIMPS---------LRNSFYR-------KNVGTNV 187
Query: 325 YVKNL---DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381
+ NL D ++ + F ++G I SCK+ + + GF+ F+ + A K + +
Sbjct: 188 FFSNLPLEDSRLTTRVFYDTFKKYGKILSCKLDK-----RKDIGFIYFNNDQSARKVIKD 242
Query: 382 MNGKMVVSKPLYVALAQRKEERR 404
NGK + + K+ R+
Sbjct: 243 YNGKEFFGNKVLCGIHFDKDFRK 265
>gi|123407360|ref|XP_001302992.1| embryonic poly [Trichomonas vaginalis G3]
gi|121884333|gb|EAX90062.1| embryonic poly, putative [Trichomonas vaginalis G3]
Length = 426
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 129/235 (54%), Gaps = 16/235 (6%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
++VGDL SV+++ + ++F G S V + +V + + A RA+ E+
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 102 NFTPLNGKPIRIMYSYRDPTIR---KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
N+T L+G PIRI++S DP + K+ G +FI+ LD++I+ LHD FS FG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
+ + G+SRGYGF+ F E+ AK A L +N K + + F +K R++ + F
Sbjct: 126 IPLTN-GKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQI-EFYQKPTRKNPEE--TF 181
Query: 219 NNVYVKNLSETT--TEDDLKKIFGEFGIITST-----AVMRDADGKSKCFGFVNF 266
NV++K L T+DDL F EFG T A+ R DG S FGF++F
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFLHF 236
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++ LD ++ SQL+D F+ G++VS ++ L+ +S GYG++ + +A RA +
Sbjct: 96 ALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKTD 153
Query: 101 LNFTPLNGKPIRIMYSYRDPTIR--KSGAGNIFIKNLDKSI--DNKALHDTFSTFGNILS 156
L +NGKPI+I + Y+ PT + + N+FIK L I + L + F FG+ +
Sbjct: 154 LADASINGKPIQIEF-YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVV 212
Query: 157 CKVATDSL-----GQSRGYGFVQFDNEE 179
A ++ G S +GF+ F + E
Sbjct: 213 TGKANPAIKRKEDGSSCEFGFLHFKHHE 240
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ V+V +L + E+ +K+IF ++G S T ++ K F FV F+ + A R++
Sbjct: 5 WKEVFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAI 64
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+N K D + ++ + + A K L+++ LD++I
Sbjct: 65 SEVNYTKLDG---------------VPIRILWSDPGTKRAIKNNVGALFIRGLDENIEVS 109
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
+L + FS FG I SCK+ NG SRG GF+ F ++A +A T++ + KP+ +
Sbjct: 110 QLHDAFSNFGEIVSCKIPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEF 168
Query: 397 AQR 399
Q+
Sbjct: 169 YQK 171
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 27/252 (10%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDKL 188
+F+ +L S+D + + F +G+ S V + + FV F++ E AK AI ++
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
N L+ + + L A K ++++ L E L F FG I S
Sbjct: 68 NYTKLDGVPIRI---LWSDPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSC 124
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ +GKS+ +GF+ F DDA R+ L + K + QK + E
Sbjct: 125 KIPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKNPE----- 178
Query: 309 EQSLKETADKFEGLNLYVKNLDDSI--SDDKLKELFSEFGTIT-----SCKVMRDPNGIS 361
ET N+++K L I +DD L F EFG + + R +G S
Sbjct: 179 -----ETF-----TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSS 228
Query: 362 RGSGFVAFSTAE 373
GF+ F E
Sbjct: 229 CEFGFLHFKHHE 240
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
+S+G+GFV F +ESA++A++ LN K ++G F K+ERE
Sbjct: 283 ESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERE 327
>gi|351699217|gb|EHB02136.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 205
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R + SL VGDL ++ LY+ F++ G V+ +RVC D+ TRRSLG+ YV++ EA
Sbjct: 6 RSYPVASLSVGDLHSDAAEAVLYEKFSRAGPVLPIRVCGDVITRRSLGHAYVSFQQPAEA 65
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
RALD +NF + GK I IM+ +DP++ KSG GN+FIKNLDKSIDNKAL+DTFS
Sbjct: 66 ERALDTMNFDGIKGKQIYIMWPQKDPSLTKSGVGNVFIKNLDKSIDNKALYDTFSAL 122
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+ +R ++ + +L L++ FS G +L +V D + + S G+ +V F
Sbjct: 2 NAAVRSYPVASLSVGDLHSDAAEAVLYEKFSRAGPVLPIRVCGDVITRRSLGHAYVSFQQ 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
A+ A+D +N + KQ+++ +++ + K+ NV++KNL ++ D K
Sbjct: 62 PAEAERALDTMNFDGIKGKQIYI----MWPQKDPSLTKSGVGNVFIKNLDKSI---DNKA 114
Query: 238 IFGEFGII 245
++ F +
Sbjct: 115 LYDTFSAL 122
>gi|366988141|ref|XP_003673837.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
gi|342299700|emb|CCC67456.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
Length = 605
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 202/447 (45%), Gaps = 67/447 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
+R+ + TSL++ L V ++ LYD+F++ +VS+++C D +++SL YGY+N++ E
Sbjct: 86 SRKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELE 145
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFST 150
A +A+D+ N+T L G I++M S R+ RK+ N+F NL +K + +A +DTF
Sbjct: 146 AKKAVDDFNYTILFGNEIKMMPSLRNTIYRKNIGTNVFFANLPLENKHLTTRAFYDTFKG 205
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ--- 207
+G ILSCK L + + GFV FDN++ A+ I+ N + ++ G K+
Sbjct: 206 YGEILSCK-----LDKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHFDKEIRN 260
Query: 208 -------------------ERESTADKTRF-----------NNVYVKNLSETTTEDDLKK 237
E E+ +F N ++VKNL ++++
Sbjct: 261 FPNFDKRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNAIFVKNLPFDVPDEEILD 320
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F + G + S KS + F+ + D R+ N KF K V +A+
Sbjct: 321 HFSKLGPVKSVFSSNVTKYKSS-WAFITYKKQTDTIRATNHFNNTKFQGKTITVSRAK-- 377
Query: 298 YEREMELKGKFEQSLKETADKFEG-LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD 356
LK T EG +Y+ N+ + + L+ L + G I + K+
Sbjct: 378 --------------LKNT----EGNRTVYLNNVSVVCNQEFLRRLCLQEG-IKAQKIYLK 418
Query: 357 PNGIS--RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
P+ SG++ ++ + A + +NGK + ++V+ + K+ + Q+ +Q
Sbjct: 419 PDDHDSYSCSGYIKCNSKDNAKRVFEILNGKFIGGCYIHVSWDKIKDPLKDE-QSDITQN 477
Query: 415 RPPVGPRMPMYPPVAPGLGQQLFYGQG 441
+ + P + + P G + Y +
Sbjct: 478 KHNILPNLFLPNPAIQKHGNFISYKES 504
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 123/312 (39%), Gaps = 31/312 (9%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFD 176
R+ RK ++FI L + L+D FS + +++S K+ DS +S YG++ F
Sbjct: 82 RNYRSRKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFS 141
Query: 177 NEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSETTTEDDL 235
+E AK A+D N +L ++ + P LR R++ F N+ ++N TT
Sbjct: 142 DELEAKKAVDDFNYTILFGNEIKMMPSLRNTIYRKNIGTNVFFANLPLENKHLTTRA--F 199
Query: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
F +G I S + K K GFV FD+ A + N K + + G
Sbjct: 200 YDTFKGYGEILSCKL-----DKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHF 254
Query: 296 KKYEREMELKGKFEQSLKETA---DKFEGLNL------------------YVKNLDDSIS 334
K R K + ++ D+ E N+ +VKNL +
Sbjct: 255 DKEIRNFPNFDKRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNAIFVKNLPFDVP 314
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D+++ + FS+ G + S + F+ + + +A N K + V
Sbjct: 315 DEEILDHFSKLGPVKSV-FSSNVTKYKSSWAFITYKKQTDTIRATNHFNNTKFQGKTITV 373
Query: 395 ALAQRKEERRAR 406
+ A+ K R
Sbjct: 374 SRAKLKNTEGNR 385
>gi|410927510|ref|XP_003977185.1| PREDICTED: ELAV-like protein 1-like [Takifugu rubripes]
Length = 341
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 150/314 (47%), Gaps = 51/314 (16%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ G G+ + T+L V L +++ +L LF+ +G+V S ++ RD SL
Sbjct: 18 SNGYEDHMGGGEGKD-AKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIAGHSL 76
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA++ LN L K I++ SY P+ N++I L KS+
Sbjct: 77 GYGFVNYVTPSDAERAINTLNGLRLQSKNIKV--SYARPSSDTIKDANLYISGLPKSMTQ 134
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D FS FG I++ +V D + G SRG F++FD A+ A++ LNG
Sbjct: 135 KDVEDMFSRFGRIINSRVLVDQATGASRGVAFIRFDKRAEAEDAVNNLNGQKPSGVVEPI 194
Query: 191 -------------------MLLNDKQVFVGPFLRKQER--------------ESTADKTR 217
+ N + F GP + +R + T
Sbjct: 195 TVKFAANPNQTKNTQVISQLFHNQSRRFGGPLHHQAQRFRFSPMSVDHMGGVGGVSVPTN 254
Query: 218 FNN---VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAA 273
NN +++ NL + E L ++FG FG +T+ V+RD K K FGFV + +DAA
Sbjct: 255 SNNGWCIFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFTTNKCKGFGFVTMSNYEDAA 314
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + +K
Sbjct: 315 MAIASLNGYRLGEK 328
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 137/317 (43%), Gaps = 43/317 (13%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
K N+ + L +++ + L FS+ G + S K+ D + G S GYGFV + A+
Sbjct: 31 KDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIAGHSLGYGFVNYVTPSDAE 90
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI+ LNG+ L K + V + R ++D + N+Y+ L ++ T+ D++ +F F
Sbjct: 91 RAINTLNGLRLQSKNIKV-SYAR-----PSSDTIKDANLYISGLPKSMTQKDVEDMFSRF 144
Query: 243 G-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWY 290
G II S ++ A G S+ F+ FD +A +V LNG+K F
Sbjct: 145 GRIINSRVLVDQATGASRGVAFIRFDKRAEAEDAVNNLNGQKPSGVVEPITVKFAANPNQ 204
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVK 327
Q + +F L A +F G +++
Sbjct: 205 TKNTQVISQLFHNQSRRFGGPLHHQAQRFRFSPMSVDHMGGVGGVSVPTNSNNGWCIFIY 264
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKM 386
NL + L ++F FG +T+ KV+RD +G GFV S E+A+ A+ +NG
Sbjct: 265 NLGQEADETILWQMFGPFGAVTNVKVIRDFTTNKCKGFGFVTMSNYEDAAMAIASLNGYR 324
Query: 387 VVSKPLYVALAQRKEER 403
+ K L V+ K +
Sbjct: 325 LGEKILQVSFKTSKGHK 341
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
++W+ + Y+ + +E + K NL V L ++S ++L+ LFS G
Sbjct: 4 QQWHNDNKNEVYD----MSNGYEDHMGGGEGKDAKTNLIVNYLPQNMSQEELRSLFSSIG 59
Query: 347 TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ S K++RD G S G GFV + T +A +A+ +NG + SK + V+ A+
Sbjct: 60 EVESAKLIRDKIAGHSLGYGFVNYVTPSDAERAINTLNGLRLQSKNIKVSYAR 112
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L +++ L+ +F G V +V+V RD +T + G+G+V + +A A+ L
Sbjct: 261 IFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFTTNKCKGFGFVTMSNYEDAAMAIASL 320
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 321 NGYRLGEKILQVSF 334
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
+++G+NLYVKNLDD I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+K
Sbjct: 7 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATK 65
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
A+TEMNG++V +KPLYVALAQRKEER+A L Q+ Q
Sbjct: 66 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 101
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 216 TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
TR+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FGFV F P++A
Sbjct: 6 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEAT 64
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 65 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 103
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 70
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER++ N Y++ ++
Sbjct: 71 NGRIVATKPLYVALAQRKEERQA-----HLTNQYMQRMA 104
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 7 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 64
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
+A+ E+N + KP+ + + R
Sbjct: 65 KAVTEMNGRIVATKPLYVALAQR 87
>gi|432092097|gb|ELK24806.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 179
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 77/115 (66%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYV DL V D+ LY+ F+ V+S+ VC + SLGY Y+N+ +
Sbjct: 5 ASSYPMASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTF 148
A RALD +NF + GKPI IM+S RDP++RKS GNIFIK LDKSIDNKAL+DTF
Sbjct: 65 AERALDTMNFDVIKGKPIHIMWSQRDPSVRKSAVGNIFIKKLDKSIDNKALYDTF 119
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAID 186
++++ +L + + L++ FS +LS V + + S GY ++ F A+ A+D
Sbjct: 11 ASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQQPADAERALD 70
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
+N ++ K + + +R+ + K+ N+++K L ++ L F
Sbjct: 71 TMNFDVIKGKPIHI----MWSQRDPSVRKSAVGNIFIKKLDKSIDNKALYDTF 119
>gi|403331840|gb|EJY64890.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 701
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 168/328 (51%), Gaps = 43/328 (13%)
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRK----SGAGNIFIKNLDKSIDNKALHDTFS-TFGN- 153
++ + +NGK R + ++ T + A N+FIKNLDKSI ++ L ++FS G+
Sbjct: 69 DMKYFEINGKQCRALPYLKEVTAAHRNNMNKANNLFIKNLDKSITSQQLDESFSKVLGSD 128
Query: 154 -ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
++S KV+ ++ SRGYGFV + E A+ A+ + + V PF K RE
Sbjct: 129 VVVSAKVSINADYTSRGYGFVCLSSPELAEQALATSDSFKFD-----VHPFNPKDRREL- 182
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV-MRDADG--KSKCFGFVNFDDP 269
+ FNN+Y+KN ++ +++IFG++G I ST + M G + F FV ++DP
Sbjct: 183 --RKTFNNIYIKNFPSIWNQEKIEQIFGQYGTIKSTFIKMGKVQGTDQEAPFAFVCYEDP 240
Query: 270 DD-------AARSVEALNGKKFDDKEWYVGKAQKKYEREMELK---GKFEQSLKETADKF 319
D+ A +V N K++D + YV +A K ERE E K +F+ S K
Sbjct: 241 DNKEYGPRCALNAVTQENEKEYDGIKLYVKEALPKKEREQEKKREQNRFKNSKKRC---- 296
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS---GFVAFSTAEEAS 376
NLYVKN ++ ++++LK F ++G I S K+ + G+ FV + E A+
Sbjct: 297 ---NLYVKNFPENTTEEQLKAYFEKYGEIESIKL-----NLKEGAAVYAFVCYKNPESAT 348
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERR 404
A + + + K L++ ++KE R+
Sbjct: 349 YAKQQSQTQTLNGKQLFLNFYEQKEVRK 376
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 38/258 (14%)
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
V+ ++ + K + +N KQ P+L++ + + NN+++KNL ++
Sbjct: 53 AMVRINDNDKFKDVARDMKYFEINGKQCRALPYLKEVTAAHRNNMNKANNLFIKNLDKSI 112
Query: 231 TEDDLKKIFGEF---GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
T L + F + ++ S V +AD S+ +GFV P+ A +++ + KFD
Sbjct: 113 TSQQLDESFSKVLGSDVVVSAKVSINADYTSRGYGFVCLSSPELAEQALATSDSFKFD-- 170
Query: 288 EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
V K RE L++T + N+Y+KN + +K++++F ++GT
Sbjct: 171 ---VHPFNPKDRRE----------LRKTFN-----NIYIKNFPSIWNQEKIEQIFGQYGT 212
Query: 348 ITSCKV-MRDPNGISRGSGFVAFSTAEE----------ASKALTEMNGKMVVSKPLYVAL 396
I S + M G + + F AF E+ A A+T+ N K LYV
Sbjct: 213 IKSTFIKMGKVQGTDQEAPF-AFVCYEDPDNKEYGPRCALNAVTQENEKEYDGIKLYVKE 271
Query: 397 AQRKEER---RARLQAQF 411
A K+ER + R Q +F
Sbjct: 272 ALPKKEREQEKKREQNRF 289
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRG-YGFVQFDNEESAKSAIDK 187
N+++KN ++ + L F +G I S K+ +L + Y FV + N ESA A +
Sbjct: 297 NLYVKNFPENTTEEQLKAYFEKYGEIESIKL---NLKEGAAVYAFVCYKNPESATYAKQQ 353
Query: 188 LNGMLLNDKQVFVGPF----LRKQERESTADKTRFNN 220
LN KQ+F+ + +RK ++E D+T F N
Sbjct: 354 SQTQTLNGKQLFLNFYEQKEVRKIQQEDARDRTDFQN 390
>gi|302308066|ref|NP_984845.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|299789279|gb|AAS52669.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|374108067|gb|AEY96974.1| FAEL016Cp [Ashbya gossypii FDAG1]
Length = 678
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 41/298 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+L++GDLD V + L D FN+ VS ++C D +T++SLGYGY+N++ +A R ++E
Sbjct: 117 ALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNEEDAERVIEE 176
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNILSC 157
N+ P+ G+ +RIM S R+ RK+ N+F NL + ++ + +D F FG ILSC
Sbjct: 177 FNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLALTTRVFYDAFKKFGKILSC 236
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TAD 214
K L + + GFV F+ + +AK AI + NG + G + R+S
Sbjct: 237 K-----LDRRKNIGFVYFEKDSAAKQAIAEYNGKEFFGNNILCGIHFDRNVRKSPEFEKR 291
Query: 215 KTRF-----------------------------NNVYVKNLSETTTEDDLKKIFGEFGII 245
K R N V++KNL D L F + G +
Sbjct: 292 KARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKNLPLNPDSDLLLDYFSQIGPV 351
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303
S + + + F+ F DA +++ LN + + + +AQK ++ +++
Sbjct: 352 KSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHSQLLGRTIELSRAQKNFQTDID 408
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 147/314 (46%), Gaps = 36/314 (11%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRG 169
+++ S PT+ +FI +LD+ + K L DTF+ F + +S K+ DS +S G
Sbjct: 99 VKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLG 158
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ-ERESTADKTRFNNVYVKNLSE 228
YG++ F NEE A+ I++ N + + ++V + P LR R++ F+N+ ++NL+
Sbjct: 159 YGYLNFSNEEDAERVIEEFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLAL 218
Query: 229 TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288
TT F +FG I S + R K GFV F+ A +++ NGK+F
Sbjct: 219 TTRV--FYDAFKKFGKILSCKLDR-----RKNIGFVYFEKDSAAKQAIAEYNGKEFFGNN 271
Query: 289 WYVGKAQKKYEREMELKGKFEQS---------LKE-----------TADKFEGLN---LY 325
G ++R + +FE+ +KE + K +G + ++
Sbjct: 272 ILCG---IHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVF 328
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNL + D L + FS+ G + S + + ++ F+ F +A A+ +N
Sbjct: 329 IKNLPLNPDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHS 387
Query: 386 MVVSKPLYVALAQR 399
++ + + ++ AQ+
Sbjct: 388 QLLGRTIELSRAQK 401
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 79/320 (24%)
Query: 35 RQFVSTSLYVGDL---DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
R+ + T+++ +L +L++ YD F + G+++S ++ R R+++G+ Y ++A
Sbjct: 199 RKNIGTNVFFSNLPLENLALTTRVFYDAFKKFGKILSCKLDR----RKNIGFVYFEKDSA 254
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKS-------------------------- 125
A +A+ E N G I + D +RKS
Sbjct: 255 --AKQAIAEYNGKEFFGNNILCGIHF-DRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQ 311
Query: 126 -----------GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQ 174
+FIKNL + D+ L D FS G + S + S S + F+
Sbjct: 312 EIPSGSKMKGPHPNAVFIKNLPLNPDSDLLLDYFSQIGPVKSIFTSNVSKLNS-AWAFIT 370
Query: 175 FDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST------------ADKTRFNN-- 220
F A+ AID LN L + + + R Q+ T + TR N+
Sbjct: 371 FKKGSDAQDAIDNLNHSQLLGRTIELS---RAQKNFQTDIDAANAGAGNNSSTTRSNDSD 427
Query: 221 -------------VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF-GFVNF 266
VY+ +LS +E L+ E I T +R D + F GFV
Sbjct: 428 PCSTQHSSSYKLTVYLSSLSSICSEQFLQCFCAEERIKTKRISIRFYDEATLTFSGFVQC 487
Query: 267 DDPDDAARSVEALNGKKFDD 286
+DA R E LN K D
Sbjct: 488 QTRNDANRLFELLNNKLLGD 507
>gi|49658982|emb|CAE01482.1| HUR [Tetraodon nigroviridis]
Length = 325
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 150/314 (47%), Gaps = 51/314 (16%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ G G+ + T+L V L +++ +L LF+ +G+V S ++ RD SL
Sbjct: 2 SNGYEDHMG-GEEGKDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVAGHSL 60
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA+ LN L K I++ SY P+ N++I L KS+
Sbjct: 61 GYGFVNYVNPSDAERAISTLNGLRLQSKNIKV--SYARPSSDTIKDANLYISGLPKSMTQ 118
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D FS FG I++ +V D + G SRG F++FD A+ AI+ LNG
Sbjct: 119 KDVEDMFSQFGRIINSRVLVDQATGVSRGVAFIRFDKRAEAEDAINNLNGQKPSEAIEPI 178
Query: 191 -------------------MLLNDKQVFVGPFLRKQER--------------ESTADKTR 217
+ N + F GP + +R + T
Sbjct: 179 TVKFAANPNQTKNTQVISQLFHNQSRRFGGPLHHQAQRFRFSPMGVDHMGGVGGVSVPTS 238
Query: 218 FNN---VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
NN +++ NL + E L ++FG FG +T+ V+RD + K K FGFV + +DAA
Sbjct: 239 SNNGWCIFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMSNYEDAA 298
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + DK
Sbjct: 299 MAIASLNGYRLGDK 312
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 144/317 (45%), Gaps = 43/317 (13%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
K N+ + L +++ + L FS+ G + S K+ D + G S GYGFV + N A+
Sbjct: 15 KDAKTNLIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVNPSDAE 74
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI LNG+ L K + V + R ++D + N+Y+ L ++ T+ D++ +F +F
Sbjct: 75 RAISTLNGLRLQSKNIKV-SYARP-----SSDTIKDANLYISGLPKSMTQKDVEDMFSQF 128
Query: 243 GIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK------EWYVGKAQ 295
G I ++ V+ D A G S+ F+ FD +A ++ LNG+K + ++ Q
Sbjct: 129 GRIINSRVLVDQATGVSRGVAFIRFDKRAEAEDAINNLNGQKPSEAIEPITVKFAANPNQ 188
Query: 296 KKYEREMEL-----KGKFEQSLKETADKFE-----------------------GLNLYVK 327
K + + +F L A +F G +++
Sbjct: 189 TKNTQVISQLFHNQSRRFGGPLHHQAQRFRFSPMGVDHMGGVGGVSVPTSSNNGWCIFIY 248
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
NL + L ++F FG +T+ KV+RD N +G GFV S E+A+ A+ +NG
Sbjct: 249 NLGQEADETILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMSNYEDAAMAIASLNGYR 308
Query: 387 VVSKPLYVALAQRKEER 403
+ K L V+ K +
Sbjct: 309 LGDKILQVSFKTSKGHK 325
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 24 GIANNGGVGDARQFVSTS----LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
G+ + GGVG S++ +++ +L +++ L+ +F G V +V+V RD +T +
Sbjct: 223 GVDHMGGVGGVSVPTSSNNGWCIFIYNLGQEADETILWQMFGPFGAVTNVKVIRDFNTNK 282
Query: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
G+G+V + +A A+ LN L K +++ +
Sbjct: 283 CKGFGFVTMSNYEDAAMAIASLNGYRLGDKILQVSF 318
>gi|384248056|gb|EIE21541.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 537
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 45/287 (15%)
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268
+E+ T +V+V LS + + LK++FG G + S VMRD G S+ FGFVNF
Sbjct: 14 QEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTK 73
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK-FEGLNLYVK 327
D+A R+++ N W V KA+K+ K EQ + +++ + NL+++
Sbjct: 74 ADEADRAIQQFNKIPHCAGTWLVRKAEKR---------KPEQKAGQVSEQGLDLCNLFIR 124
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM 386
++ IS +L+ +F FG + S K++ DP G S+ +GF+ F+ EEA++A+ EMNGK
Sbjct: 125 GVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQ 184
Query: 387 VVSKPLYVALAQRKE--ERRARLQAQFSQ--MRP--PVG-----------PRMP------ 423
V SK L+V LAQ++ + + + F Q +P P G P+ P
Sbjct: 185 VGSKRLFVTLAQKRATTDPQGIIHPPFEQSAAQPSTPTGMAYFMPMSGMAPQYPQGAHGH 244
Query: 424 -------MYPP-VAPGLGQQLFYGQGPPIIPPQVIYSFLLIDYFNAL 462
MYPP + P Q G GP PPQ+++ + + F +
Sbjct: 245 PAFQPYGMYPPGMVPIHPQAYQQGYGP---PPQLVWQGMPMAAFQGM 288
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 15/194 (7%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
++F+ L + ++ L + F G + S V D G SRG+GFV F + A AI +
Sbjct: 25 SVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQF 84
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTR--------FNNVYVKNLSETTTEDDLKKIFG 240
N + V RK E+ K N++++ + + L+ +F
Sbjct: 85 NKIPHCAGTWLV----RKAEKRKPEQKAGQVSEQGLDLCNLFIRGVEPEISSIRLQSMFE 140
Query: 241 EFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299
FG + S+ ++ D G SKC GF+ F P++AAR++ +NGK+ K +V AQK+
Sbjct: 141 AFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQVGSKRLFVTLAQKRAT 200
Query: 300 REME--LKGKFEQS 311
+ + + FEQS
Sbjct: 201 TDPQGIIHPPFEQS 214
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 27 NNGGVGDARQFV-----STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
NGG A++ V S S++V L L V+ L ++F ++G+V S V RD S
Sbjct: 6 TNGGGPGAQEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRD-HFGASR 64
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGA--------GNIFIK 133
G+G+VN+ A EA RA+ + N P + + + +K+G N+FI+
Sbjct: 65 GFGFVNFTKADEADRAIQQFNKIPHCAGTWLVRKAEKRKPEQKAGQVSEQGLDLCNLFIR 124
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGML 192
++ I + L F FG ++S K+ D G S+ GF++F E A AI ++NG
Sbjct: 125 GVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQ 184
Query: 193 LNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDL 235
+ K++FV Q+R +T + + + ++ ++ +T +
Sbjct: 185 VGSKRLFV---TLAQKRATTDPQGIIHPPFEQSAAQPSTPTGM 224
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 180/393 (45%), Gaps = 42/393 (10%)
Query: 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA 91
G ++ +T+LYVG+L SV +L +LF G++V +V + T S GYG+V Y+
Sbjct: 196 GKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDP 255
Query: 92 HEATRALDELNFTPLNGKPIRIMY-----SYRDPTIRKSG-----------AGNIFIKNL 135
H AT A++ +N ++GK + + S +P+I+ +++++NL
Sbjct: 256 HSATAAINRMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNL 315
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
S+ + L F FG I+ KV D + G ++GYGFV++ N A +AI LNG L+
Sbjct: 316 SLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVE 375
Query: 195 DKQV-----FVGPFLRKQERESTAD-----KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
K++ V P L ES D + N+YV N+ + L +IF FG
Sbjct: 376 GKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIEIFLPFGK 435
Query: 245 ITSTAVMRDA---DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
IT V GK + +GFV F D AA ++ ++G + + V A
Sbjct: 436 ITHARVAAHQGTYSGKGR-YGFVKFADSQCAAEAITLMDGALVEGETLVVRVAG----LS 490
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGIS 361
L + + +Y+ NL S + D + +LF FG I+ KV+ ++
Sbjct: 491 SSASSPAVHGLPIPSPEINKSRIYITNLPRSTNADMMVKLFVPFGQIS--KVV-----MN 543
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
V ++ A KA+ M+G M+ K L V
Sbjct: 544 LEYSLVYYADVASAVKAIKHMDGYMIGGKRLVV 576
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 174/387 (44%), Gaps = 48/387 (12%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+SLYV +L LS+ +L F G+++ +V RD +T + GYG+V Y+ +HEA A+
Sbjct: 308 SSLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAII 367
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGA--------------GNIFIKNLDKSIDNKALH 145
LN + GK + + S P + S N+++ N+ SID K L
Sbjct: 368 HLNGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLI 427
Query: 146 DTFSTFGNILSCKVATDS---LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202
+ F FG I +VA G+ R YGFV+F + + A AI ++G L+ + + V
Sbjct: 428 EIFLPFGKITHARVAAHQGTYSGKGR-YGFVKFADSQCAAEAITLMDGALVEGETLVVRV 486
Query: 203 FLRKQERESTA-----------DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251
S A +K+R +Y+ NL +T D + K+F FG I+ +
Sbjct: 487 AGLSSSASSPAVHGLPIPSPEINKSR---IYITNLPRSTNADMMVKLFVPFGQISKVVMN 543
Query: 252 RDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE-Q 310
+ + V + D A ++++ ++G K V ++ + G Q
Sbjct: 544 LE-------YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSDSC---PTDAAGHTSTQ 593
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
SL + + + N++V + +++ D+L ELF FG I +V + +G G F+
Sbjct: 594 SLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH-----QGYGMFRFN 648
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALA 397
A+ A+ MNG + L V +A
Sbjct: 649 DPFSAAAAIDHMNGYQIGGSALVVRVA 675
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 161/392 (41%), Gaps = 56/392 (14%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNYNAAHEATRALD 99
+LYV ++ S++ +L ++F G++ RV T G YG+V + + A A+
Sbjct: 411 NLYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAIT 470
Query: 100 ELNFTPLNGKPIRIMYS---------------YRDPTIRKSGAGNIFIKNLDKSIDNKAL 144
++ + G+ + + + P I KS I+I NL +S + +
Sbjct: 471 LMDGALVEGETLVVRVAGLSSSASSPAVHGLPIPSPEINKS---RIYITNLPRSTNADMM 527
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV---- 200
F FG I + + Y V + + SA AI ++G ++ K++ V
Sbjct: 528 VKLFVPFGQISKVVMNLE-------YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSD 580
Query: 201 ------GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA 254
Q + NV+V + T D L ++F FG I V
Sbjct: 581 SCPTDAAGHTSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVF--- 637
Query: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKE 314
+ + +G F+DP AA +++ +NG + V A + G F + +
Sbjct: 638 --QHQGYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAG------LPNPGDFSAATDD 689
Query: 315 TADKFEG--------LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365
+ G NLYV +L I+ +KL E+F G IT +V+ D GIS+G G
Sbjct: 690 LKLQMPGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFG 749
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FV F+ A+ ALT MNG + L V +A
Sbjct: 750 FVRFADTYSAAVALTHMNGYPLEGHILEVRIA 781
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELF 342
+FDD++ ++GK Q+ + GK LKE + NLYV NL S+ KL ELF
Sbjct: 173 QFDDQDKHLGKRQEHTLPLSQEGGK----LKEV----DNTNLYVGNLPASVGSHKLIELF 224
Query: 343 SEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
FG I KV + G+S+G GFV + A+ A+ MNG++V K L V +A
Sbjct: 225 LPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRMNGRLVDGKILEVRVA 280
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
+ ++ +++VG + +VN QL +LF GQ+V VRV + GYG +N
Sbjct: 598 EVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH------QGYGMFRFNDPF 651
Query: 93 EATRALDELNFTPLNGKPIRIMY-----------SYRDPTIRKSG-------AGNIFIKN 134
A A+D +N + G + + + D ++ G N+++ +
Sbjct: 652 SAAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMANLYVCH 711
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193
L I + L + F G I +V TD G S+G+GFV+F + SA A+ +NG L
Sbjct: 712 LPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGYPL 771
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 12 VAVAAQPSP-----ATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
V VA P+P AT+ + + RQ +LYV L L + +L ++F GQ+
Sbjct: 672 VRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQI 731
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPT 121
RV D T S G+G+V + + A AL +N PL G + + + P+
Sbjct: 732 TQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILEVRIAGVHPS 786
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377
+++G+NLY+KNLDD+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+K
Sbjct: 1 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATK 59
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
A+TEMNG++V SKPLYVALAQRKEER+A L Q+ Q
Sbjct: 60 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 95
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+Y+KNL +T ++ L+K F FG ITS VM + DG+SK FGFV F P++A ++V +
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 64
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 65 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 97
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD +ID++ L FS FG+I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 64
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLS 227
NG ++ K ++V RK+ER K N Y++ ++
Sbjct: 65 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 98
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +++D +L F+ G + S +V L RS G+G+V +++ EAT
Sbjct: 1 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEAT 58
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N + KP+ + + R RK+ N +++ +
Sbjct: 59 KAVTEMNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRV 97
>gi|440293231|gb|ELP86374.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 538
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 172/352 (48%), Gaps = 25/352 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++V L +V +S LY + QV SV V R+ ++ Y VN N A +A+
Sbjct: 14 TVFVSGLTKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAY--VNMNTHEAAKKAI 71
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ +N ++GKP+ + +S +D R N+F+KN+ K++ K + D F TFG I+S K
Sbjct: 72 ETMNGALIDGKPVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 131
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
++ + G S G+G+V++ E+A A++ N + K + K E+++ KT
Sbjct: 132 LSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQTKNKKT-- 187
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITST------AVMRDADGKSKCFGFVNFDDPDDA 272
N+YV N+ ++ E+ K F FG + + D GFV+F++ +DA
Sbjct: 188 -NLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFASKDEYPTAMGFVDFENEEDA 246
Query: 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD- 331
+++ A E V K ER+ E + K + + K++ N+YVK +D
Sbjct: 247 QKALTAPKNNVLGQGEIKVVYYMSKKERKREYQLKNNEIMASIKGKYKEFNMYVKTSNDS 306
Query: 332 --SISDDKLKELFSEFGTITSCKVM---RDPNGISRGSGFVAFSTAEEASKA 378
S SD +++ F++ G I S ++ + P ++ +V F++ E KA
Sbjct: 307 EHSTSDAEIRSAFADCGEIYSIRIKYFNKSPTDVA----YVCFTSQEGYDKA 354
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 27/239 (11%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R T+L+V ++ +V+ ++ D+F G+++SV++ + S G+GYV Y A
Sbjct: 96 RTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIEAA 154
Query: 95 TRALDE-LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG- 152
+A++ G+ I+ + T K+ N+++ N+DKS++ + F TFG
Sbjct: 155 LKAVENAAEIKAKIGEDNFIVAKFEKQT--KNKKTNLYVSNIDKSVNEEQFVKYFETFGP 212
Query: 153 ------NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
N A+ + GFV F+NEE A+ A+ +L ++ V ++ K
Sbjct: 213 LRKNPDNKFQVLFASKDEYPT-AMGFVDFENEEDAQKALTAPKNNVLGQGEIKVVYYMSK 271
Query: 207 QERE------------STADKTRFNNVYVK--NLSETTTED-DLKKIFGEFGIITSTAV 250
+ER+ S K + N+YVK N SE +T D +++ F + G I S +
Sbjct: 272 KERKREYQLKNNEIMASIKGKYKEFNMYVKTSNDSEHSTSDAEIRSAFADCGEIYSIRI 330
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 86/116 (74%), Gaps = 3/116 (2%)
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
ELK ++E + E K++G+NL+VKNLDDS+ D+KL+E FS FGTI S KVMR +G S+
Sbjct: 2 ELKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSK 61
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
GFV FST EEA++A+TE N ++V KPLYVA+AQRKE RRA+L Q +QMR
Sbjct: 62 NFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARNQMR 117
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 204 LRKQERESTADK-TRFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
L+KQ + +K T++ N++VKNL ++ ++ L++ F FG I S VMR DGKSK
Sbjct: 3 LKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKN 62
Query: 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
FGFV F P++A R++ N + K YV AQ+K R +L
Sbjct: 63 FGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQL 106
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+F+KNLD S+D++ L + FS FG I+S KV G+S+ +GFV F E A AI +
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
N ++ K ++V RK+ R +
Sbjct: 82 NQQIVAGKPLYVAIAQRKEVRRA 104
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD SV+D +L + F+ G ++S +V R +S +G+V ++ EAT
Sbjct: 17 KYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRT-EDGKSKNFGFVCFSTPEEAT 75
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
RA+ E N + GKP+ + + R R A + +N
Sbjct: 76 RAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARN 114
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 158/335 (47%), Gaps = 57/335 (17%)
Query: 16 AQPSPATNGIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
A P + GI N NG D++ T+L V L ++ + LF +G++ S ++ R
Sbjct: 13 ASNGPGSVGILNGTNGAADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 68
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D T +SLGYG+VNY ++A +A++ LN L K I++ SY P+ N+++
Sbjct: 69 DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVS 126
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG-- 190
+L K+++ K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 127 SLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 186
Query: 191 -----------------------MLLNDKQV----FVGPFLRKQER-------------- 209
+L + Q + GP + +R
Sbjct: 187 PLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNL 246
Query: 210 ---ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVN 265
T T ++V NLS E L ++FG FG +T+ V+RD K K FGFV
Sbjct: 247 AGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 306
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVG-KAQKKYE 299
+ D+AA ++ +LNG + D+ V K K+++
Sbjct: 307 MTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHK 341
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 45/313 (14%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 95
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV +L +T + +++++F ++G IIT
Sbjct: 96 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSSLPKTMNQKEMEQLFSQYGRIIT 149
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK------------FDDKEWYVGKA 294
S ++ G S+ GF+ FD +A +++ LNG+K ++ G+A
Sbjct: 150 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 209
Query: 295 QKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVKNLDD 331
+ + + ++ L +F G ++V NL
Sbjct: 210 LLTHLYQTTAR-RYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSP 268
Query: 332 SISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG + +
Sbjct: 269 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 328
Query: 391 PLYVALAQRKEER 403
L V+ K+ +
Sbjct: 329 VLQVSFKTSKQHK 341
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 22/191 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 95
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG K K V A + ++ NLYV +L +++ ++
Sbjct: 96 LNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSSLPKTMNQKEM 137
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395
++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ + S+P+ V
Sbjct: 138 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVK 197
Query: 396 LAQRKEERRAR 406
A ++ +
Sbjct: 198 FANNPSQKTGQ 208
>gi|297733643|emb|CBI14890.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 65/74 (87%)
Query: 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTF 151
+A RALD LNFTPLNGKP+RIMYS+RDP+IRKSG NIFIKNLDK ID+KALHDTFS F
Sbjct: 277 QDAARALDVLNFTPLNGKPLRIMYSHRDPSIRKSGTENIFIKNLDKGIDHKALHDTFSAF 336
Query: 152 GNILSCKVATDSLG 165
GNILSCK ATD+ G
Sbjct: 337 GNILSCKEATDASG 350
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
+P DAAR+++ LN + K + + + + S++++ + N+++K
Sbjct: 275 NPQDAARALDVLNFTPLNGKPLRIMYSHR------------DPSIRKSGTE----NIFIK 318
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
NLD I L + FS FG I SCK D +G+
Sbjct: 319 NLDKGIDHKALHDTFSAFGNILSCKEATDASGM 351
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
IL + T +G N + A A+D LN LN K + + R+ +
Sbjct: 260 ILCLSILTTQIGHD--------SNPQDAARALDVLNFTPLNGKPLRI----MYSHRDPSI 307
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260
K+ N+++KNL + L F FG I S DA G C
Sbjct: 308 RKSGTENIFIKNLDKGIDHKALHDTFSAFGNILSCKEATDASGMQGC 354
>gi|432936678|ref|XP_004082225.1| PREDICTED: ELAV-like protein 1-like [Oryzias latipes]
Length = 342
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 146/314 (46%), Gaps = 50/314 (15%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ GD + T+L V L S++ +L LF+ +G+V S ++ RD SL
Sbjct: 18 SNGYEDHMVGGDEPKDAKTNLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSL 77
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA+ LN L K I++ SY P+ N++I L K++
Sbjct: 78 GYGFVNYLNPSDAERAISTLNGLRLQSKTIKV--SYARPSSDTIKDANLYISGLPKNMTQ 135
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D FS +G I++ +V D S G SRG F++FD A+ A+ LNG
Sbjct: 136 KDVEDMFSCYGRIINSRVLVDQSTGMSRGVAFIRFDKRSEAEEAVKSLNGQKPPGVTEPI 195
Query: 191 -------------------MLLNDKQVFVGPFLRKQER-----------------ESTAD 214
+ N + F GP + +R +
Sbjct: 196 TVKFAANPNQVKNTQIISQLYHNQSRRFGGPLHHQAQRFRFSPMSVDHMGGMGSVGVPGN 255
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
T +++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA
Sbjct: 256 STSGWCIFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 315
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + DK
Sbjct: 316 MAIASLNGYRLGDK 329
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 139/317 (43%), Gaps = 43/317 (13%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
K N+ + L +S+ L FS+ G + S K+ D + G S GYGFV + N A+
Sbjct: 32 KDAKTNLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAE 91
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI LNG+ L K + V + R ++D + N+Y+ L + T+ D++ +F +
Sbjct: 92 RAISTLNGLRLQSKTIKV-SYAR-----PSSDTIKDANLYISGLPKNMTQKDVEDMFSCY 145
Query: 243 G-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWY 290
G II S ++ + G S+ F+ FD +A +V++LNG+K F
Sbjct: 146 GRIINSRVLVDQSTGMSRGVAFIRFDKRSEAEEAVKSLNGQKPPGVTEPITVKFAANPNQ 205
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVK 327
V Q + +F L A +F G +++
Sbjct: 206 VKNTQIISQLYHNQSRRFGGPLHHQAQRFRFSPMSVDHMGGMGSVGVPGNSTSGWCIFIY 265
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+ +NG
Sbjct: 266 NLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYR 325
Query: 387 VVSKPLYVALAQRKEER 403
+ K L V+ K +
Sbjct: 326 LGDKILQVSFKTSKGHK 342
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 291 VGKAQKKYEREM-ELKGKFEQSLKETAD-KFEGLNLYVKNLDDSISDDKLKELFSEFGTI 348
V + KY +E+ E+ +E + + K NL V L S+S D+L+ LFS G +
Sbjct: 3 VRRGHNKYLKEVYEMSNGYEDHMVGGDEPKDAKTNLIVNYLPQSMSQDELRSLFSSIGEV 62
Query: 349 TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
S K++RD G S G GFV + +A +A++ +NG + SK + V+ A+
Sbjct: 63 ESAKLIRDKVAGHSLGYGFVNYLNPSDAERAISTLNGLRLQSKTIKVSYAR 113
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L ++S L+ +F G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 262 IFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 321
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 322 NGYRLGDKILQVSF 335
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 78/97 (80%)
Query: 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEAS 376
++ +G NLYVKNLDD+I D +LKE FS+FG+ITS KVM D G S+G GFV F+T EEAS
Sbjct: 2 NRTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEAS 61
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
KA+ EM+G+++VSKPLYV AQRKEER+A L +Q++
Sbjct: 62 KAINEMSGRIIVSKPLYVTFAQRKEERKAFLASQYNH 98
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
R GA N+++KNLD +ID+ L + FS FG+I S KV D G S+G+GFV F +E A
Sbjct: 3 RTQGA-NLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEAS 61
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERES 211
AI++++G ++ K ++V RK+ER++
Sbjct: 62 KAINEMSGRIIVSKPLYVTFAQRKEERKA 90
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
++T+ N+YVKNL + + LK+ F +FG ITS VM D G SK FGFV F ++A+
Sbjct: 2 NRTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEAS 61
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
+++ ++G+ K YV AQ+K ER+ L ++ +
Sbjct: 62 KAINEMSGRIIVSKPLYVTFAQRKEERKAFLASQYNHRV 100
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV +LD +++D++L + F++ G + S +V D S G+G+V + EA++A++E
Sbjct: 8 NLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCD-EKGASKGFGFVCFATQEEASKAINE 66
Query: 101 LNFTPLNGKPIRIMYSYR 118
++ + KP+ + ++ R
Sbjct: 67 MSGRIIVSKPLYVTFAQR 84
>gi|440293224|gb|ELP86367.1| polyadenylate-binding protein, putative [Entamoeba invadens IP1]
Length = 519
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 177/359 (49%), Gaps = 36/359 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+++V L +V +S LY + QV SV V R+ YVN N A +A+
Sbjct: 16 TIFVSSLSKNVTESLLYKEISAKFESQVASVHVSRN--EHYDTAIAYVNMNTHEAAKKAI 73
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ +N ++GK + + +S +D R N+F+KN+ K++ K + D F TFG I+S K
Sbjct: 74 ETMNGALIDGKTVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 133
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRF 218
++ + G S G+G+V++ E+A A++ N + K + K E+++ KT
Sbjct: 134 LSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQTKNKKT-- 189
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITST-----AVMRDADGKS-KCFGFVNFDDPDDA 272
N+YV N+ ++ E+ K F FG + V+ D K GFV+F++ +DA
Sbjct: 190 -NLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFACDDKHPTAMGFVDFENEEDA 248
Query: 273 ARSVEALNGKKFDDKE----WYVGKAQKK---YEREMELKGKFEQSLKETADKFEGLNLY 325
+++ A E +Y+ ++++ ++ +E+K + K++ N+Y
Sbjct: 249 QKALTAPKNNVLGQGEIKVDYYMSRSERSRVWLQKSLEIKSNIQ-------GKYKDFNMY 301
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVM---RDPNGISRGSGFVAFSTAEEASKALTE 381
+ L + SD +++ F++ G I S +V + P I+ FV F++ E +KA+T+
Sbjct: 302 INTLKEPTSDAEIRSAFADCGEIYSVRVKYYEKVPTSIA----FVCFTSQEAFNKAMTK 356
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R T+L+V ++ +V+ ++ D+F G+++SV++ + S G+GYV Y A
Sbjct: 98 RTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIEAA 156
Query: 95 TRALDE-LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG- 152
+A++ G+ I+ + T K+ N+++ N+DKS++ + F TFG
Sbjct: 157 LKAVENAAEIKAKIGEDNFIVAKFEKQT--KNKKTNLYVSNIDKSVNEEQFVKYFETFGP 214
Query: 153 ------NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206
N A D GFV F+NEE A+ A+ +L ++ V ++ +
Sbjct: 215 LRKNPDNKFQVLFACDD-KHPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVDYYMSR 273
Query: 207 QER------------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
ER + K + N+Y+ L E T++ +++ F + G I S V
Sbjct: 274 SERSRVWLQKSLEIKSNIQGKYKDFNMYINTLKEPTSDAEIRSAFADCGEIYSVRV 329
>gi|94733636|emb|CAK04114.1| novel protein (zgc:56258) [Danio rerio]
Length = 865
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 146/313 (46%), Gaps = 46/313 (14%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
A +F++ L ++ N+ L + FS G + +C V D + RG+G+V F E+ A+ A+
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 187 KLNGMLLNDKQVFV-------------------------------GPFLRKQERESTADK 215
++ L +D+++FV G +E S K
Sbjct: 63 EVK--LYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKK 120
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ ++NLS +D+LK+IF +FG + T + DGK K F FV F +A ++
Sbjct: 121 KENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKA 180
Query: 276 VEALNGKKFDDK----EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN-------L 324
A+N K D+ +W + + E K E++ + +KF+G+ L
Sbjct: 181 RAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRL 238
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
++NL +D LK++FSEFGT+ K+ P+G RG FV F EA KALT MNG
Sbjct: 239 IIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNG 298
Query: 385 KMVVSKPLYVALA 397
K + + + V A
Sbjct: 299 KKIKDRQVAVDWA 311
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 130/313 (41%), Gaps = 59/313 (18%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L+V L + ++ L ++F+++G + + V D ++ G+GYV ++ +A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCD-KEKKCRGFGYVTFSMEDDAQRAL 61
Query: 99 DELNF--------------------------------TPLNGKPIRIMYSYRDPT-IRKS 125
E+ T + K + P+ +K
Sbjct: 62 KEVKLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKKK 121
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G + I+NL ++ L FS FG +L ++ G+ +G+ FVQF A+ A
Sbjct: 122 ENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKAR 181
Query: 186 DKLNGMLLNDKQVFVGPFLRKQER------------ESTADKTRFNNV---------YVK 224
+N + D+ V V E E T +F + ++
Sbjct: 182 AAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIR 241
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NLS EDDLK+IF EFG + + DGK + F FV F +A +++ A+NGKK
Sbjct: 242 NLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKI 301
Query: 285 DDKE----WYVGK 293
D++ W + K
Sbjct: 302 KDRQVAVDWAIAK 314
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 130 IFIKNLDKSID-NKALHDTFSTFG----NILSCKVATDS-------LGQSRGYGFVQFDN 177
+ + NL KS+D NK + S G I+ C++ D +GQS GYGFV+F
Sbjct: 593 LCVHNLPKSVDKNKLFNLCVSAAGGKGVRIIECRIMYDKKPVKGQVMGQSLGYGFVEFQE 652
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLR 205
E A A+ LN N+ +F GP R
Sbjct: 653 HEHAIQALRHLN----NNPDIF-GPQKR 675
>gi|209155462|gb|ACI33963.1| ELAV-like protein 1 [Salmo salar]
Length = 342
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 147/314 (46%), Gaps = 50/314 (15%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ G GD T+L V L S++ +L LF+ +G+V S ++ RD SL
Sbjct: 18 SNGYEDHMGGGDEVTDAKTNLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSL 77
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA++ LN L K I++ SY P+ N++I L K++
Sbjct: 78 GYGFVNYLTPSDAERAINTLNGLRLQSKTIKV--SYARPSSDTIKDANLYISGLPKTMTQ 135
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D F+ +G I++ +V D + G SRG F++FD A+ AI LNG
Sbjct: 136 KDVEDMFARYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGSAEPI 195
Query: 191 -------------------MLLNDKQVFVGPFLRKQER-----------------ESTAD 214
+ N + F GP + +R +
Sbjct: 196 TVKFAASPNQAKNTQLISQLYHNQGRRFGGPVHHQAQRFRFSPMSVDHMSGMSGVSLPGN 255
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
T +++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA
Sbjct: 256 ATSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 315
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + DK
Sbjct: 316 MAIGSLNGYRLGDK 329
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 43/312 (13%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +S+ L FS+ G + S K+ D + G S GYGFV + A+ AI+
Sbjct: 37 NLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLTPSDAERAINT 96
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V + R ++D + N+Y+ L +T T+ D++ +F +G II
Sbjct: 97 LNGLRLQSKTIKV-SYAR-----PSSDTIKDANLYISGLPKTMTQKDVEDMFARYGRIIN 150
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWYVGKAQ 295
S ++ A G S+ F+ FD +A +++ LNG+K F Q
Sbjct: 151 SRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGSAEPITVKFAASPNQAKNTQ 210
Query: 296 KKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVKNLDDS 332
+ +F + A +F G +++ NL
Sbjct: 211 LISQLYHNQGRRFGGPVHHQAQRFRFSPMSVDHMSGMSGVSLPGNATSGWCIFIYNLGQD 270
Query: 333 ISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ L ++F FG +T+ KV+RD N +G GFV + EEA+ A+ +NG + K
Sbjct: 271 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIGSLNGYRLGDKI 330
Query: 392 LYVALAQRKEER 403
L V+ K +
Sbjct: 331 LQVSFKTSKGHK 342
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L ++ L+ +F G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 262 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIGSL 321
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 322 NGYRLGDKILQVSF 335
>gi|156849127|ref|XP_001647444.1| hypothetical protein Kpol_1018p122 [Vanderwaltozyma polyspora DSM
70294]
gi|156118130|gb|EDO19586.1| hypothetical protein Kpol_1018p122 [Vanderwaltozyma polyspora DSM
70294]
Length = 634
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 35/249 (14%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
N V +++Q S +LY+GDL+ V + L + F ++SV++C D + SLGYGY+N
Sbjct: 89 NNNVIESKQ--SIALYIGDLEKFVTEDMLKNFFAMYKSLLSVKICVDSHSGESLGYGYLN 146
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKAL 144
EA ++ N+TP+ GK +RIM S R+ RK+ N+F +L +KSI +
Sbjct: 147 LTTKEEADDLMERFNYTPIFGKVVRIMPSLRNSQTRKNMGTNVFFSDLPLSEKSITTRDF 206
Query: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG-MLLNDKQVFVGPF 203
++ F +GNILSCK+ T S+ GF+ F+NE SAK I K N LL ++ G
Sbjct: 207 YNFFKAYGNILSCKLNT-----SKNIGFIFFENESSAKEVISKFNANELLYGYKINCGVH 261
Query: 204 LRKQER-------------ESTADK-----------TRFNNVYVKNLSETTTEDDLKKIF 239
+ K R ES + + T ++ VKNL + ++ ++ IF
Sbjct: 262 IDKSIRKNLGTEKQKSASSESCSHRLTPICRPNEHSTERKSILVKNLPKEISDYEISSIF 321
Query: 240 GEFGIITST 248
G FG I ST
Sbjct: 322 GNFGSIEST 330
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382
NLYVKNLDDSI D +LK+ F FG ITS KVM D N S+G GFV FS EEA+KA+TEM
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 383 NGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGP 442
NGK+ SKPLYVALAQRKE+R+A L +Q+ Q V P YP + GP
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQR---VNPHRSSYP---NQVSVNTLISGGP 114
Query: 443 PIIPPQVIYSF 453
P P + Y+F
Sbjct: 115 PGGPSILPYAF 125
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKNL ++ + LK+ F FG ITS VM D++ +SK FGFV F +P++A ++V +
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
NGK K YV AQ+K +R+ L ++ Q
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQ 91
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 54/83 (65%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD SID+ L F FGNI S KV TDS +S+G+GFV F N E A A+ ++
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 189 NGMLLNDKQVFVGPFLRKQERES 211
NG + K ++V RK++R++
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKA 83
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYV +LD S++DS+L F G + S +V D S RS G+G+V ++ EAT+A+ E+
Sbjct: 2 LYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTD-SNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 102 NFTPLNGKPIRIMYSYR 118
N KP+ + + R
Sbjct: 61 NGKICGSKPLYVALAQR 77
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 157/335 (46%), Gaps = 57/335 (17%)
Query: 16 AQPSPATNGIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
A P GI N NG D++ T+L V L ++ + LF +G++ S ++ R
Sbjct: 12 ANNGPGCVGILNGTNGEADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 67
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D T +SLGYG+VNY ++A +A++ LN L K I++ SY P+ N+++
Sbjct: 68 DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVS 125
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG-- 190
+L K+++ K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 126 SLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 185
Query: 191 -----------------------MLLNDKQV----FVGPFLRKQER-------------- 209
+L + Q + GP + +R
Sbjct: 186 PLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNL 245
Query: 210 ---ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVN 265
T T ++V NLS E L ++FG FG +T+ V+RD K K FGFV
Sbjct: 246 AGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 305
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVG-KAQKKYE 299
+ D+AA ++ +LNG + D+ V K K+++
Sbjct: 306 MTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHK 340
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 45/313 (14%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 94
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV +L +T + +++++F ++G IIT
Sbjct: 95 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSSLPKTMNQKEMEQLFSQYGRIIT 148
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK------------FDDKEWYVGKA 294
S ++ G S+ GF+ FD +A +++ LNG+K ++ G+A
Sbjct: 149 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 208
Query: 295 QKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVKNLDD 331
+ + + ++ L +F G ++V NL
Sbjct: 209 LLTHLYQTTAR-RYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSP 267
Query: 332 SISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390
+ L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG + +
Sbjct: 268 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 327
Query: 391 PLYVALAQRKEER 403
L V+ K+ +
Sbjct: 328 VLQVSFKTSKQHK 340
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 22/191 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 94
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG K K V A + ++ NLYV +L +++ ++
Sbjct: 95 LNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSSLPKTMNQKEM 136
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395
++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ + S+P+ V
Sbjct: 137 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVK 196
Query: 396 LAQRKEERRAR 406
A ++ +
Sbjct: 197 FANNPSQKTGQ 207
>gi|41053419|ref|NP_956615.1| RNA-binding protein 28 [Danio rerio]
gi|30353878|gb|AAH51781.1| Zgc:56258 [Danio rerio]
Length = 864
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 46/313 (14%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
A +F++ L ++ N+ L + FS G + +C V D + RG+G+V F E+ A+ A+
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 187 KLNGMLLNDKQVFV-------------------------------GPFLRKQERESTADK 215
++ L +D+++FV G ++ S K
Sbjct: 63 EVK--LYDDQKIFVTVAKKKLDDRKRKKNAKTNKDSGDTEESQKSGETKNTEKIPSPTKK 120
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ + ++NLS +D+LK+IF +FG + T + DGK K F FV F +A ++
Sbjct: 121 KENSWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKA 180
Query: 276 VEALNGKKFDDK----EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLN-------L 324
A+N K D+ +W + + E K E++ + +KF+G+ L
Sbjct: 181 RAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRL 238
Query: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384
++NL +D LK++FSEFGT+ K+ P+G RG FV F EA KALT MNG
Sbjct: 239 IIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNG 298
Query: 385 KMVVSKPLYVALA 397
K + + + V A
Sbjct: 299 KKIKDRQVAVDWA 311
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 130/313 (41%), Gaps = 59/313 (18%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L+V L + ++ L ++F+++G + + V D ++ G+GYV ++ +A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCD-KEKKCRGFGYVTFSMEDDAQRAL 61
Query: 99 DELNF--------------------------------TPLNGKPIRIMYSYRDPT-IRKS 125
E+ T + K + + P+ +K
Sbjct: 62 KEVKLYDDQKIFVTVAKKKLDDRKRKKNAKTNKDSGDTEESQKSGETKNTEKIPSPTKKK 121
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
+ I+NL ++ L FS FG +L ++ G+ +G+ FVQF A+ A
Sbjct: 122 ENSWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKAR 181
Query: 186 DKLNGMLLNDKQVFVGPFLRKQER------------ESTADKTRFNNV---------YVK 224
+N + D+ V V E E T +F + ++
Sbjct: 182 AAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIR 241
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284
NLS EDDLK+IF EFG + + DGK + F FV F +A +++ A+NGKK
Sbjct: 242 NLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKI 301
Query: 285 DDKE----WYVGK 293
D++ W + K
Sbjct: 302 KDRQVAVDWAIAK 314
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 130 IFIKNLDKSID-NKALHDTFSTFG----NILSCKVATDS-------LGQSRGYGFVQFDN 177
+ + NL KS+D NK + S G I+ C++ D +GQS GYGFV+F
Sbjct: 592 LCVHNLPKSVDKNKLFNLCVSAAGGKGVRIIECRIMYDKKPVKGQVMGQSLGYGFVEFQE 651
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLR 205
E A A+ LN N+ +F GP R
Sbjct: 652 HEHAIQALRHLN----NNPDIF-GPQKR 674
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 87/128 (67%), Gaps = 2/128 (1%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YV +AQ K ER LK +F +F G+NLYVKNL +++ D++LK +F FGTIT
Sbjct: 51 YVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTIT 110
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S KVM D G+SRG GFV FST EEA+KA+T+M+ K++ KPLYV + +++E+R RLQ
Sbjct: 111 SVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQ 170
Query: 410 QFSQMRPP 417
++ PP
Sbjct: 171 RYRA--PP 176
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
N+YVKNL ET +++LK++F FG ITS VM D G S+ FGFV F ++A ++V +
Sbjct: 84 NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDM 143
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ K K YVG +K+ +R L+ ++
Sbjct: 144 HLKLIGGKPLYVGMHEKREQRLERLQQRY 172
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185
G N+++KNL +++D+ L F FG I S KV TD G SRG+GFV F E A A+
Sbjct: 81 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 140
Query: 186 DKLNGMLLNDKQVFVGPFLRKQER 209
++ L+ K ++VG ++++R
Sbjct: 141 TDMHLKLIGGKPLYVGMHEKREQR 164
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
+F +LYV +L +V+D++L +F G + SV+V D S G+G+V ++ EAT
Sbjct: 79 RFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTD-DKGVSRGFGFVCFSTHEEAT 137
Query: 96 RALDELNFTPLNGKPIRI-MYSYRDPTIRK 124
+A+ +++ + GKP+ + M+ R+ + +
Sbjct: 138 KAVTDMHLKLIGGKPLYVGMHEKREQRLER 167
>gi|50290407|ref|XP_447635.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526945|emb|CAG60572.1| unnamed protein product [Candida glabrata]
Length = 602
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 182/416 (43%), Gaps = 58/416 (13%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ +L+VG+L + +L ++F +S +VC + RSLG+GY+N+ +A RA
Sbjct: 63 NIALFVGNLAEEITSERLTEMFKVYKSFISAKVCTNADDNRSLGHGYINFGNKEDAERAT 122
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL---DKSIDNKALHDTFSTFGNIL 155
++ N+ + GK IRIM S RD RK+ NIF NL + + ++ +D F +GN+L
Sbjct: 123 EDFNYNKIMGKEIRIMPSIRDSVYRKNFGTNIFFSNLPLQKEKLTHRMFYDIFRKYGNVL 182
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM----------LLNDKQVFVGPFLR 205
S K L S+ GFV F+++ A+ I + N L DK++ P
Sbjct: 183 SVK-----LDSSKNIGFVYFEDDTIARDVIKEFNNKEFLGNIISCGLHFDKELRKKPNFD 237
Query: 206 KQ----------ERES----------TADKTRF-----NNVYVKNLSETTTEDDLKKIFG 240
KQ E+E DK + N +++KNL T +++ IF
Sbjct: 238 KQISKLDDDIIIEKEKEIFDSNKVEIKIDKDKVAIIQPNGIFIKNLPLDTNNNEILAIFS 297
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
E G I S + + + + FV + D +++ NGK ++ +V A KY
Sbjct: 298 EVGPIKSVFLSPLNESREYLWAFVTYKDKASVEKAISLFNGKAIGNRNVFVTHAYSKYNI 357
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
F +L D+ + L + L S+ + +K SE +P +
Sbjct: 358 PTPKPILFLSNLSPICDR-KFLKQIMNQL--SVKPEDIKVHQSE-----------NPEHV 403
Query: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP 416
+ +G + F T ++ KA +N K+V +Y + K+ + +F Q+ P
Sbjct: 404 T-STGTIQFKTQDDLDKAKKFLNNKLVSGSIIYATTRKSKKNQEQTNYREFCQILP 458
>gi|403221974|dbj|BAM40106.1| splicing factor 3b subunit 4 [Theileria orientalis strain Shintoku]
Length = 326
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 4/176 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LY+G+LD+ ++ L++ F Q G+V S+ + RD T + G+G+V Y +A AL
Sbjct: 19 TLYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETETDADYALRI 78
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LNF L KP+R+ + +D + GA N+FI N+D +D K LHDTFS FG ++ K+
Sbjct: 79 LNFIKLYHKPLRLNKASKDKENTEIGA-NLFIGNIDDEVDEKLLHDTFSAFGTVVFTKIV 137
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ---ERESTA 213
D R Y FV FDN ES+ +A+ +NG L +K + V +K ER +A
Sbjct: 138 RDEANSGRSYAFVSFDNFESSDAALASMNGQFLCNKPIHVSYAYKKDTKGERHGSA 193
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 18/197 (9%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
S D+ + +Y+ NL E+ L + F + G + S + RD G+ + FGFV ++
Sbjct: 10 SLYDRNQEATLYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETE 69
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNL 329
DA ++ LN K K + KA K E E+ G NL++ N+
Sbjct: 70 TDADYALRILNFIKLYHKPLRLNKASKDKENT-EI----------------GANLFIGNI 112
Query: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
DD + + L + FS FGT+ K++RD R FV+F E + AL MNG+ + +
Sbjct: 113 DDEVDEKLLHDTFSAFGTVVFTKIVRDEANSGRSYAFVSFDNFESSDAALASMNGQFLCN 172
Query: 390 KPLYVALAQRKEERRAR 406
KP++V+ A +K+ + R
Sbjct: 173 KPIHVSYAYKKDTKGER 189
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
++I NLD D + L + F G + S + D + GQ +G+GFV+++ E A A+ L
Sbjct: 20 LYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETETDADYALRIL 79
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFN-NVYVKNLSETTTEDDLKKIFGEFGIITS 247
N + L K LR + + T N+++ N+ + E L F FG +
Sbjct: 80 NFIKLYHKP------LRLNKASKDKENTEIGANLFIGNIDDEVDEKLLHDTFSAFGTVVF 133
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
T ++RD + + FV+FD+ + + ++ ++NG+ +K +V A KK
Sbjct: 134 TKIVRDEANSGRSYAFVSFDNFESSDAALASMNGQFLCNKPIHVSYAYKK 183
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+ +L++G++D V++ L+D F+ G VV ++ RD Y +V+++ + A
Sbjct: 103 IGANLFIGNIDDEVDEKLLHDTFSAFGTVVFTKIVRD-EANSGRSYAFVSFDNFESSDAA 161
Query: 98 LDELNFTPLNGKPIRIMYSYRDPT 121
L +N L KPI + Y+Y+ T
Sbjct: 162 LASMNGQFLCNKPIHVSYAYKKDT 185
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 158/342 (46%), Gaps = 64/342 (18%)
Query: 16 AQPSPATNGIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
A P GI N NG D++ T+L V L ++ + LF +G++ S ++ R
Sbjct: 12 ANNGPGCVGILNGTNGEADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 67
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D T +SLGYG+VNY ++A +A++ LN L K I++ SY P+ N+++
Sbjct: 68 DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVS 125
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG-- 190
+L K+++ K + FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 126 SLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 185
Query: 191 -----------------------MLLNDKQV----FVGPFLRKQERES------------ 211
+L + Q + GP + +R S
Sbjct: 186 PLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRFSPIT 245
Query: 212 ------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKS 258
T T ++V NLS E L ++FG FG +T+ V+RD K
Sbjct: 246 IDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKC 305
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG-KAQKKYE 299
K FGFV + D+AA ++ +LNG + D+ V K K+++
Sbjct: 306 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHK 347
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 50/319 (15%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 94
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV +L +T + +++++F ++G IIT
Sbjct: 95 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSSLPKTMNQKEMEQLFSQYGRIIT 148
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDK-------- 287
S ++ G S+ GF+ FD +A +++ LNG+K F +
Sbjct: 149 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 208
Query: 288 ----------EWYVGKAQKKYER--EMELKGKFEQSLKETADKFEGLNL----------Y 325
Y G + +R + + +F ++ G++L +
Sbjct: 209 LLTHLYQTTARRYTGPLHHQTQRFSPLSILPRFSPITIDSVTNLAGVSLTGPTTAGWCIF 268
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNG 384
V NL + L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG
Sbjct: 269 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 328
Query: 385 KMVVSKPLYVALAQRKEER 403
+ + L V+ K+ +
Sbjct: 329 YRLGDRVLQVSFKTSKQHK 347
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 22/191 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 94
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG K K V A + ++ NLYV +L +++ ++
Sbjct: 95 LNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSSLPKTMNQKEM 136
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395
++LFS++G I + +++ D G+SRG GF+ F EA +A+ +NG+ + S+P+ V
Sbjct: 137 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVK 196
Query: 396 LAQRKEERRAR 406
A ++ +
Sbjct: 197 FANNPSQKTGQ 207
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 5 QVQPQAPVAVAAQPSPAT-NGIANNGGVG-DARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
Q Q +P+++ + SP T + + N GV ++V +L ++S L+ LF
Sbjct: 228 QTQRFSPLSILPRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGP 287
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
G V +V+V RD +T + G+G+V EA A+ LN L + +++ +
Sbjct: 288 FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 340
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 157/336 (46%), Gaps = 58/336 (17%)
Query: 16 AQPSPATNGIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR 73
A P + GI N NG D++ T+L V L ++ + LF +G++ S ++ R
Sbjct: 13 ASNGPGSVGILNGTNGAADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 68
Query: 74 DLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIK 133
D T +SLGYG+VNY ++A +A++ LN L K I++ SY P+ N+++
Sbjct: 69 DKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVS 126
Query: 134 NLDKSIDNKALHDTFSTFGNILSCKVATDSL--GQSRGYGFVQFDNEESAKSAIDKLNG- 190
+L K+++ K + FS +G I++ ++ D + SRG GF++FD A+ AI LNG
Sbjct: 127 SLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQ 186
Query: 191 ------------------------MLLNDKQV----FVGPFLRKQER------------- 209
+L + Q + GP + +R
Sbjct: 187 KPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTN 246
Query: 210 ----ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFV 264
T T ++V NLS E L ++FG FG +T+ V+RD K K FGFV
Sbjct: 247 LAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 306
Query: 265 NFDDPDDAARSVEALNGKKFDDKEWYVG-KAQKKYE 299
+ D+AA ++ +LNG + D+ V K K+++
Sbjct: 307 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHK 342
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 46/314 (14%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 95
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV +L +T + +++++F ++G IIT
Sbjct: 96 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSSLPKTMNQKEMEQLFSQYGRIIT 149
Query: 247 STAVMRDADGK-SKCFGFVNFDDPDDAARSVEALNGKK------------FDDKEWYVGK 293
S ++ G S+ GF+ FD +A +++ LNG+K ++ G+
Sbjct: 150 SRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQ 209
Query: 294 AQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVKNLD 330
A + + + ++ L +F G ++V NL
Sbjct: 210 ALLTHLYQTTAR-RYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLS 268
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389
+ L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG +
Sbjct: 269 PEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 328
Query: 390 KPLYVALAQRKEER 403
+ L V+ K+ +
Sbjct: 329 RVLQVSFKTSKQHK 342
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 23/192 (11%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 95
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG K K V A + ++ NLYV +L +++ ++
Sbjct: 96 LNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSSLPKTMNQKEM 137
Query: 339 KELFSEFGTITSCKVMRD--PNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYV 394
++LFS++G I + +++ D +SRG GF+ F EA +A+ +NG+ + S+P+ V
Sbjct: 138 EQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITV 197
Query: 395 ALAQRKEERRAR 406
A ++ +
Sbjct: 198 KFANNPSQKTGQ 209
>gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii]
Length = 361
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 154/328 (46%), Gaps = 67/328 (20%)
Query: 23 NGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-------- 74
NG +N+ V + T+L V L ++ ++ LF+ +G+V S ++ RD
Sbjct: 25 NGGSNHSPVSPGAEDSKTNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSG 84
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
S+ +SLGYG+VNY +A +A++ LN L K I++ SY P+ N+++
Sbjct: 85 TSSCQSLGYGFVNYKRPEDAEKAINTLNGLRLQNKTIKV--SYARPSSESIKGANLYLSG 142
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGML- 192
L KS+ L FS+ G+I++C++ D + G S+G GF++FD A+ AI +LNG +
Sbjct: 143 LPKSMSEPELRSLFSSCGSIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKVP 202
Query: 193 ------------------------------LNDKQVFVGPFLRKQERESTADKTRFN--- 219
L+ + F+GP R S+A +RF+
Sbjct: 203 EGATEPITVKFANAPSSNKNQLPITAMATYLSPTRRFLGPIHHPAGRFSSA--SRFSPLD 260
Query: 220 -------------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSK 259
++V NL+ T E+ L ++FG FG + S V+RD K K
Sbjct: 261 GGLMPNTLLSGNALNGAGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDFQTQKCK 320
Query: 260 CFGFVNFDDPDDAARSVEALNGKKFDDK 287
FGFV + D+A ++++LNG ++
Sbjct: 321 GFGFVTMTNYDEALMAIQSLNGYTLGNR 348
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 105/200 (52%), Gaps = 30/200 (15%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-----ADGKSKC----FGFVNFDDPD 270
N+ V L +T T+++++ +F G + S ++RD + G S C +GFVN+ P+
Sbjct: 43 NLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVNYKRPE 102
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLD 330
DA +++ LNG + +K V A + +++ +G NLY+ L
Sbjct: 103 DAEKAINTLNGLRLQNKTIKVSYA------------------RPSSESIKGANLYLSGLP 144
Query: 331 DSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMV-- 387
S+S+ +L+ LFS G+I +C+++ D G+S+G GF+ F EA +A+ ++NGK+
Sbjct: 145 KSMSEPELRSLFSSCGSIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKVPEG 204
Query: 388 VSKPLYVALAQRKEERRARL 407
++P+ V A + +L
Sbjct: 205 ATEPITVKFANAPSSNKNQL 224
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 56/318 (17%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKV----ATD-----SLGQSRGYGFVQFDNEE 179
N+ + L +++ + + FS+ G + SCK+ ATD S QS GYGFV + E
Sbjct: 43 NLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVNYKRPE 102
Query: 180 SAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIF 239
A+ AI+ LNG+ L +K + V + R +++ + N+Y+ L ++ +E +L+ +F
Sbjct: 103 DAEKAINTLNGLRLQNKTIKVS-YARP-----SSESIKGANLYLSGLPKSMSEPELRSLF 156
Query: 240 GEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGK-----------KFDDK 287
G I + ++ D G SK GF+ FD +A R+++ LNGK KF +
Sbjct: 157 SSCGSIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKVPEGATEPITVKFANA 216
Query: 288 -------------EWYVGKAQKKYEREMELKGKFEQS---------------LKETADKF 319
Y+ ++ G+F + L A
Sbjct: 217 PSSNKNQLPITAMATYLSPTRRFLGPIHHPAGRFSSASRFSPLDGGLMPNTLLSGNALNG 276
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKA 378
G ++V NL ++ L +LF FG + S KV+RD +G GFV + +EA A
Sbjct: 277 AGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDFQTQKCKGFGFVTMTNYDEALMA 336
Query: 379 LTEMNGKMVVSKPLYVAL 396
+ +NG + ++ L V+
Sbjct: 337 IQSLNGYTLGNRVLQVSF 354
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 7 QPQAPVAVAAQPSPATNGIANNGGV-GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ 65
P + A++ SP G+ N + G+A ++V +L ++ L+ LF G
Sbjct: 245 HPAGRFSSASRFSPLDGGLMPNTLLSGNALNGAGWCIFVYNLAPETEENVLWQLFGPFGA 304
Query: 66 VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
V SV+V RD T++ G+G+V EA A+ LN L + +++ +
Sbjct: 305 VQSVKVIRDFQTQKCKGFGFVTMTNYDEALMAIQSLNGYTLGNRVLQVSF 354
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 145/304 (47%), Gaps = 46/304 (15%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
T G + +G G + + T+L V L ++ ++ LF+ +G+V S ++ RD T +SL
Sbjct: 9 TGGGSPDGRTGSSTEDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSL 68
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A +A++ LN L K I++ SY P+ + N+++ L K++
Sbjct: 69 GYGFVNYVKPQDAEKAINTLNGLRLQAKTIKV--SYARPSSQAIKDANLYVSGLPKTMTQ 126
Query: 142 KALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGML-------- 192
+ L F G I++ ++ D + GQSRG GFV+FD A+ AI +LNG +
Sbjct: 127 QDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKGATDPI 186
Query: 193 ---------------------LNDKQVFVGPFLRKQER----ESTADKTRFNN------- 220
L + ++GP L + R AD N
Sbjct: 187 TVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGADPMGVGNIPNGGTG 246
Query: 221 --VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVE 277
++V NL+ T + L ++FG FG +T+ V+RD K K FGFV D+A ++
Sbjct: 247 FCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIA 306
Query: 278 ALNG 281
LNG
Sbjct: 307 QLNG 310
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 141/308 (45%), Gaps = 39/308 (12%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + FS+ G + SCK+ D + GQS GYGFV + + A+ AI+
Sbjct: 28 NLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKAINT 87
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V + ++ D N+YV L +T T+ DL+ +F G IIT
Sbjct: 88 LNGLRLQAKTIKVS--YARPSSQAIKDA----NLYVSGLPKTMTQQDLEGLFEAHGRIIT 141
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK-----------KFDD--------- 286
S + G+S+ GFV FD +A R++ LNG KF +
Sbjct: 142 SRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKGATDPITVKFANNPSQNHAKA 201
Query: 287 --KEWYVGKAQKKYEREMELKGKFEQS--------LKETADKFEGLNLYVKNLDDSISDD 336
+ Y+ A++ + +F S + + G ++V NL D
Sbjct: 202 LQQAAYLAPARRYLGPMLHQTARFRYSPMGADPMGVGNIPNGGTGFCIFVYNLAPDTEDS 261
Query: 337 KLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
L +LF FG +T+ KV+RD +G GFV + +EA A+ ++NG + + L V+
Sbjct: 262 VLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQLNGYCLGGRVLQVS 321
Query: 396 LAQRKEER 403
K +
Sbjct: 322 FKTNKAHK 329
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFD 267
R ++ + N+ V L +T T+D++K +F G + S ++RD G+S +GFVN+
Sbjct: 17 RTGSSTEDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYV 76
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
P DA +++ LNG + K V A+ Q++K+ NLYV
Sbjct: 77 KPQDAEKAINTLNGLRLQAKTIKVSYARPS-----------SQAIKDA-------NLYVS 118
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM 386
L +++ L+ LF G I + +++ DP G SRG GFV F EA +A+TE+NG +
Sbjct: 119 GLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHI 178
Query: 387 V--VSKPLYVALAQRKEERRARLQAQFSQMRPP---VGPRM 422
+ P+ V A + A+ Q + + P +GP +
Sbjct: 179 PKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPML 219
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 47/203 (23%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ L LF G++++ R+ D T +S G G+V ++ EA RA+ E
Sbjct: 114 NLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITE 173
Query: 101 LNFTPLNGK--PIRIMYS----------------------YRDPTIRKS----------- 125
LN G PI + ++ Y P + ++
Sbjct: 174 LNGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGAD 233
Query: 126 --GAGNI---------FIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFV 173
G GNI F+ NL ++ L F FG + + KV D + +G+GFV
Sbjct: 234 PMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFV 293
Query: 174 QFDNEESAKSAIDKLNGMLLNDK 196
+ + A AI +LNG L +
Sbjct: 294 TMAHYDEAVVAIAQLNGYCLGGR 316
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 24 GIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
G+ N NGG G ++V +L DS L+ LF G V +V+V RD T +
Sbjct: 236 GVGNIPNGGTG-------FCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCK 288
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
G+G+V EA A+ +LN L G+ +++ +
Sbjct: 289 GFGFVTMAHYDEAVVAIAQLNGYCLGGRVLQVSF 322
>gi|348510833|ref|XP_003442949.1| PREDICTED: ELAV-like protein 1-like [Oreochromis niloticus]
Length = 341
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 145/314 (46%), Gaps = 51/314 (16%)
Query: 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
+NG ++ G GD + T+L V L ++ +L LF+ +G+V S ++ RD SL
Sbjct: 18 SNGYEDHMG-GDEGKDAKTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 76
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDN 141
GYG+VNY +A RA+ LN L K I++ SY P+ N++I L K++
Sbjct: 77 GYGFVNYLNPSDAERAISTLNGLRLQSKTIKV--SYARPSSDTIKDANLYISGLPKNMTQ 134
Query: 142 KALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG---------- 190
K + D FS +G I++ +V D G SRG F++FD A+ A+ LNG
Sbjct: 135 KDVEDMFSRYGRIINSRVLVDQGTGSSRGVAFIRFDKRAEAEEAVKNLNGQKPPGASEPI 194
Query: 191 -------------------MLLNDKQVFVGPFLRKQER-----------------ESTAD 214
+ N + F GP + +R +
Sbjct: 195 TVKFAANPNQVKNTQLLSQLYHNQSRRFGGPLHHQAQRFRFSPMGVDHMGSMGGVSVPGN 254
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
T +++ NL + E L ++FG FG +T+ V+RD + K K FGFV + ++AA
Sbjct: 255 STSGWCIFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 314
Query: 274 RSVEALNGKKFDDK 287
++ +LNG + DK
Sbjct: 315 MAIASLNGYRLGDK 328
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 137/317 (43%), Gaps = 43/317 (13%)
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAK 182
K N+ + L +++ L FS+ G + S K+ D + G S GYGFV + N A+
Sbjct: 31 KDAKTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAE 90
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
AI LNG+ L K + V + R ++D + N+Y+ L + T+ D++ +F +
Sbjct: 91 RAISTLNGLRLQSKTIKV-SYAR-----PSSDTIKDANLYISGLPKNMTQKDVEDMFSRY 144
Query: 243 G-IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDKEWY 290
G II S ++ G S+ F+ FD +A +V+ LNG+K F
Sbjct: 145 GRIINSRVLVDQGTGSSRGVAFIRFDKRAEAEEAVKNLNGQKPPGASEPITVKFAANPNQ 204
Query: 291 VGKAQKKYEREMELKGKFEQSLKETADKFE-----------------------GLNLYVK 327
V Q + +F L A +F G +++
Sbjct: 205 VKNTQLLSQLYHNQSRRFGGPLHHQAQRFRFSPMGVDHMGSMGGVSVPGNSTSGWCIFIY 264
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
NL + L ++F FG +T+ KV+RD N +G GFV + EEA+ A+ +NG
Sbjct: 265 NLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYR 324
Query: 387 VVSKPLYVALAQRKEER 403
+ K L V+ K +
Sbjct: 325 LGDKILQVSFKTSKGHK 341
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 291 VGKAQKKYEREM-ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
V + KY +E+ ++ +E + K NL V L +++ D+L+ LFS G +
Sbjct: 3 VRRGHIKYMKEVYDMSNGYEDHMGGDEGKDAKTNLIVNYLPQNMTQDELRSLFSSIGEVE 62
Query: 350 SCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
S K++RD G S G GFV + +A +A++ +NG + SK + V+ A+
Sbjct: 63 SAKLIRDKVAGHSLGYGFVNYLNPSDAERAISTLNGLRLQSKTIKVSYAR 112
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L ++S L+ +F G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 261 IFIYNLGQDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 320
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 321 NGYRLGDKILQVSF 334
>gi|403354844|gb|EJY76981.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 590
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 167/341 (48%), Gaps = 42/341 (12%)
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRK----SGAGNIFIKNLDKSIDNKALHDTFS-TFGN- 153
++ + +NGK R + ++ T + + N+FIKNLDKSI ++ L +TFS G
Sbjct: 69 DMKYFEINGKQCRALPYLKEVTAAQRNNVNKQNNLFIKNLDKSITSQQLDETFSKVLGGD 128
Query: 154 -ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST 212
++S KV+ ++ SRGYGFV E A+ A+ K + V P+ K RE
Sbjct: 129 VVVSAKVSINADYSSRGYGFVFLATPEQAEQALAKASEFKFE-----VHPYQPKDRREI- 182
Query: 213 ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV-MRDADG--KSKCFGFVNFDDP 269
+ FNN+Y+KN ++ +++IFG++G I ST + M G + F FV ++D
Sbjct: 183 --RKTFNNIYIKNFPSNWNKEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAPFAFVCYEDK 240
Query: 270 DD-------AARSVEALNGKKFDDKEWYVGKAQKKYEREMELK---GKFEQSLKETADKF 319
D+ A ++ N K++D + YV +A K RE E K +F+ S K
Sbjct: 241 DNKEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRFKNSKKRC---- 296
Query: 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
NLYVKN ++ ++++LK F ++G I S K+ FV + E A+ A
Sbjct: 297 ---NLYVKNFPENTTEEQLKAYFEKYGEIESIKLNHKEGAAV--YAFVCYKNPESATYAK 351
Query: 380 TEMNGKMVVSKPLYVALAQRKEERR-----ARLQAQFSQMR 415
+ + + K L++ ++KE R+ AR + F +R
Sbjct: 352 QQSQTQTLNGKQLFLNFYEQKEVRKIQQEDARDRTDFQNLR 392
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 115/258 (44%), Gaps = 38/258 (14%)
Query: 171 GFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETT 230
V+ ++ + K + +N KQ P+L++ + + NN+++KNL ++
Sbjct: 53 AMVRINDNDKFKDVARDMKYFEINGKQCRALPYLKEVTAAQRNNVNKQNNLFIKNLDKSI 112
Query: 231 TEDDLKKIFGEF---GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
T L + F + ++ S V +AD S+ +GFV P+ A +++ + KF+
Sbjct: 113 TSQQLDETFSKVLGGDVVVSAKVSINADYSSRGYGFVFLATPEQAEQALAKASEFKFE-- 170
Query: 288 EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347
V Q K RE +++T + N+Y+KN + + +K++++F ++GT
Sbjct: 171 ---VHPYQPKDRRE----------IRKTFN-----NIYIKNFPSNWNKEKIEQIFGQYGT 212
Query: 348 ITSCKV-MRDPNGISRGSGFVAFSTAEE----------ASKALTEMNGKMVVSKPLYVAL 396
I S + M G + + F AF E+ A A+ + N K LYV
Sbjct: 213 IKSTVIKMGKVQGTDQEAPF-AFVCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKE 271
Query: 397 AQRK---EERRARLQAQF 411
A K E+ + R Q +F
Sbjct: 272 ALPKTLREQEKKREQNRF 289
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 152/324 (46%), Gaps = 55/324 (16%)
Query: 25 IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 84
I+ NG D++ T+L V L ++ + LF +G++ S ++ RD T +SLGYG
Sbjct: 27 ISTNGSTDDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYG 82
Query: 85 YVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKAL 144
+VNY ++A +A++ LN L K I++ SY P+ N+++ L K++ K +
Sbjct: 83 FVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMSQKDM 140
Query: 145 HDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG------------- 190
FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 191 ------------MLLNDKQV----FVGPFLRKQER--------ESTADKTRFN------- 219
+L Q + GP + +R +S N
Sbjct: 201 FANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFRFSPITIDSMTSLAGVNLTGPTGA 260
Query: 220 --NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSV 276
++V NLS E L ++FG FG +T+ V+RD K K FGFV + D+AA ++
Sbjct: 261 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 320
Query: 277 EALNGKKFDDKEWYVG-KAQKKYE 299
+LNG + D+ V K K+++
Sbjct: 321 ASLNGYRLGDRVLQVSFKTSKQHK 344
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 43/312 (13%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ D++++F ++G IIT
Sbjct: 99 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK------------FDDKEWYVGKA 294
S ++ G S+ GF+ FD ++A +++ LNG+K ++ G+A
Sbjct: 153 SRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 212
Query: 295 ---------QKKYEREMELKG---KFEQSLKETADKFEGLNL----------YVKNLDDS 332
++Y + + +F ++ G+NL +V NL
Sbjct: 213 LLTQLYQTAARRYTGPLHHQTQRFRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPE 272
Query: 333 ISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+ L +LF FG +T+ KV+RD +G GFV + +EA+ A+ +NG + +
Sbjct: 273 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 332
Query: 392 LYVALAQRKEER 403
L V+ K+ +
Sbjct: 333 LQVSFKTSKQHK 344
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 24/199 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG K K V A + ++ NLYV L ++S +
Sbjct: 99 LNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSGLPKTMSQKDM 140
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395
++LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ + ++P+ V
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 396 LAQRKEERRARLQAQFSQM 414
A ++ QA +Q+
Sbjct: 201 FANNPSQKTG--QALLTQL 217
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L++ FS FGTIT
Sbjct: 2 YVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 61
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
S KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 62 SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 102
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 13/97 (13%)
Query: 198 VFVGPFLRKQERESTADK----------TRFN--NVYVKNLSETTTEDDLKKIFGEFGII 245
++VG +K ER++ + TR+ N+YVKNL + ++ L+K F FG I
Sbjct: 1 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 60
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282
TS VM + G+SK FGFV F P++A ++V +NG+
Sbjct: 61 TSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 96
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N+++KNLD ID++ L FS FG I S KV + G+S+G+GFV F + E A A+ ++
Sbjct: 35 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 93
Query: 189 NGMLLNDK 196
NG ++ K
Sbjct: 94 NGRIVATK 101
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + RS G+G+V +++ EAT
Sbjct: 30 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEAT 87
Query: 96 RALDELNFTPLNGKP 110
+A+ E+N + KP
Sbjct: 88 KAVTEMNGRIVATKP 102
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 100/161 (62%), Gaps = 2/161 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++Y+G+LD V D +++LF Q G VV+V + +D + GYG+V + + +A A+
Sbjct: 20 TIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKI 79
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
++ L GKPI++ + +D ++ GA N+FI NLD ID K L++TFS FG+ILS K+
Sbjct: 80 MHMIKLYGKPIKVNKASQDKRTQEVGA-NLFIGNLDTEIDEKTLYETFSAFGHILSTKIM 138
Query: 161 TD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
+ G S+GYGFV +DN ES+ A+ +NG L K + V
Sbjct: 139 RNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRV 179
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 29/218 (13%)
Query: 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKS 258
V P L ++ +E+T +Y+ NL + T+D + ++F + G + + + +D G+
Sbjct: 8 VVPPLYERNQEAT--------IYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEH 59
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA-QKKYEREMELKGKFEQSLKETAD 317
+ +GFV F +DA +++ ++ K K V KA Q K +E+
Sbjct: 60 QGYGFVEFKSEEDADYAIKIMHMIKLYGKPIKVNKASQDKRTQEV--------------- 104
Query: 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEAS 376
G NL++ NLD I + L E FS FG I S K+MR+P G+S+G GFV++ E +
Sbjct: 105 ---GANLFIGNLDTEIDEKTLYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSD 161
Query: 377 KALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
ALT MNG+ + +K + V A +K+ + R +Q ++
Sbjct: 162 GALTAMNGQFLGTKIIRVEYAFKKDAKGERHGSQAERL 199
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 7/180 (3%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNE 178
P ++ I+I NLD+ + + + + F G +++ + D + G+ +GYGFV+F +E
Sbjct: 11 PLYERNQEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSE 70
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
E A AI ++ + L K + V + + + N+++ NL E L +
Sbjct: 71 EDADYAIKIMHMIKLYGKPIKVNKASQDKRTQEVG-----ANLFIGNLDTEIDEKTLYET 125
Query: 239 FGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F FG I ST +MR+ + G SK +GFV++D+ + + ++ A+NG+ K V A KK
Sbjct: 126 FSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAFKK 185
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q V +L++G+LD +++ LY+ F+ G ++S ++ R+ T S GYG+V+Y+ +
Sbjct: 102 QEVGANLFIGNLDTEIDEKTLYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSD 161
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
AL +N L K IR+ Y+++
Sbjct: 162 GALTAMNGQFLGTKIIRVEYAFK 184
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 107/177 (60%), Gaps = 3/177 (1%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + + YVG+LD +++ L++LF Q G VV+V V +D T + GYG+
Sbjct: 11 ANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
V + + +A A+ LN L GKPIR+ + +D GA N+FI NLD +D K L+
Sbjct: 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLY 129
Query: 146 DTFSTFGNILS-CKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
DTFS FG I++ K+ D G SRG+GF+ +D+ E++ SAI+ +NG L ++Q+ V
Sbjct: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 186
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 41/260 (15%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ A++ + YV NL +E+ L ++F + G + + V +D + + +GFV F
Sbjct: 16 QHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ LN K K V KA + K++ D G NL++ N
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGN 118
Query: 329 LDDSISDDKLKELFSEFGTI-TSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I T+ K+MRDP+ G SRG GF+++ + E + A+ MNG+
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQY 178
Query: 387 VVSKPLYVALAQRKEER--------------------RARLQAQFSQMRPPVGPRMPMYP 426
+ ++ + V+ A +K+ + ++R F+ PP P +P
Sbjct: 179 LCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFAS-GPPTLPSVPQAN 237
Query: 427 PVAPGLGQQLFYGQGPPIIP 446
VAP + G PP IP
Sbjct: 238 GVAPVPPRPFANGVAPPAIP 257
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 142/298 (47%), Gaps = 46/298 (15%)
Query: 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 87
+G G + + T+L V L ++ ++ LF+ +G+V S ++ RD T +SLGYG+VN
Sbjct: 11 DGRTGSSTKDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVN 70
Query: 88 YNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDT 147
Y +A +A++ LN L K I++ SY P+ + N+++ L K++ + L
Sbjct: 71 YVKPQDAEKAINTLNGLRLQAKTIKV--SYARPSSQAIKDANLYVSGLPKTMTQQDLEGL 128
Query: 148 FSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNGML-------------- 192
F G I++ ++ D + GQSRG GFV+FD A+ AI +LNG +
Sbjct: 129 FEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKGATDPITVKFAN 188
Query: 193 ---------------LNDKQVFVGPFLRKQER----ESTADKTRFNN---------VYVK 224
L + ++GP L + R AD N ++V
Sbjct: 189 NPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGADPMGVGNIPNGGTGFCIFVY 248
Query: 225 NLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNG 281
NL+ T + L ++FG FG +T+ V+RD K K FGFV D+A ++ LNG
Sbjct: 249 NLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQLNG 306
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 141/308 (45%), Gaps = 39/308 (12%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + FS+ G + SCK+ D + GQS GYGFV + + A+ AI+
Sbjct: 24 NLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKAINT 83
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V + ++ D N+YV L +T T+ DL+ +F G IIT
Sbjct: 84 LNGLRLQAKTIKVS--YARPSSQAIKDA----NLYVSGLPKTMTQQDLEGLFEAHGRIIT 137
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK-----------KFDD--------- 286
S + G+S+ GFV FD +A R++ LNG KF +
Sbjct: 138 SRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKGATDPITVKFANNPSQNHAKA 197
Query: 287 --KEWYVGKAQKKYEREMELKGKFEQS--------LKETADKFEGLNLYVKNLDDSISDD 336
+ Y+ A++ + +F S + + G ++V NL D
Sbjct: 198 LQQAAYLAPARRYLGPMLHQTARFRYSPMGADPMGVGNIPNGGTGFCIFVYNLAPDTEDS 257
Query: 337 KLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
L +LF FG +T+ KV+RD +G GFV + +EA A+ ++NG + + L V+
Sbjct: 258 VLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVTMAHYDEAVVAIAQLNGYCLGGRVLQVS 317
Query: 396 LAQRKEER 403
K +
Sbjct: 318 FKTNKAHK 325
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 22/212 (10%)
Query: 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFD 267
R ++ K N+ V L +T T+D++K +F G + S ++RD G+S +GFVN+
Sbjct: 13 RTGSSTKDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYV 72
Query: 268 DPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327
P DA +++ LNG + K V A+ Q++K+ NLYV
Sbjct: 73 KPQDAEKAINTLNGLRLQAKTIKVSYARPS-----------SQAIKDA-------NLYVS 114
Query: 328 NLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM 386
L +++ L+ LF G I + +++ DP G SRG GFV F EA +A+TE+NG +
Sbjct: 115 GLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHI 174
Query: 387 V--VSKPLYVALAQRKEERRARLQAQFSQMRP 416
+ P+ V A + A+ Q + + P
Sbjct: 175 PKGATDPITVKFANNPSQNHAKALQQAAYLAP 206
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 47/203 (23%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+LYV L ++ L LF G++++ R+ D T +S G G+V ++ EA RA+ E
Sbjct: 110 NLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITE 169
Query: 101 LNFTPLNGK--PIRIMYS----------------------YRDPTIRKS----------- 125
LN G PI + ++ Y P + ++
Sbjct: 170 LNGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGAD 229
Query: 126 --GAGNI---------FIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFV 173
G GNI F+ NL ++ L F FG + + KV D + +G+GFV
Sbjct: 230 PMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFV 289
Query: 174 QFDNEESAKSAIDKLNGMLLNDK 196
+ + A AI +LNG L +
Sbjct: 290 TMAHYDEAVVAIAQLNGYCLGGR 312
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 24 GIAN--NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 81
G+ N NGG G ++V +L DS L+ LF G V +V+V RD T +
Sbjct: 232 GVGNIPNGGTG-------FCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCK 284
Query: 82 GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115
G+G+V EA A+ +LN L G+ +++ +
Sbjct: 285 GFGFVTMAHYDEAVVAIAQLNGYCLGGRVLQVSF 318
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 155/338 (45%), Gaps = 69/338 (20%)
Query: 25 IANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 84
I+ NG D++ T+L V L ++ + LF +G++ S ++ RD T +SLGYG
Sbjct: 27 ISTNGSTDDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYG 82
Query: 85 YVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKAL 144
+VNY ++A +A++ LN L K I++ SY P+ N+++ L K++ K +
Sbjct: 83 FVNYVDPNDADKAINTLNGLKLQTKTIKV--SYARPSSASIRDANLYVSGLPKTMSQKDM 140
Query: 145 HDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKLNG------------- 190
FS +G I++ ++ D + G SRG GF++FD A+ AI LNG
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 191 ------------MLLNDKQV----FVGPFLRKQER--------ESTADKTRFN------- 219
+L Q + GP + +R S K+RF+
Sbjct: 201 FANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFRLDNLLNASYGVKSRFSPITIDSM 260
Query: 220 ----------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFG 262
++V NLS E L ++FG FG +T+ V+RD K K FG
Sbjct: 261 TSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 320
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVG-KAQKKYE 299
FV + D+AA ++ +LNG + D+ V K K+++
Sbjct: 321 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 147/326 (45%), Gaps = 57/326 (17%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDK 187
N+ + L +++ + F + G I SCK+ D + GQS GYGFV + + A AI+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG-IIT 246
LNG+ L K + V R S+A R N+YV L +T ++ D++++F ++G IIT
Sbjct: 99 LNGLKLQTKTIKV-----SYARPSSAS-IRDANLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 247 STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-----------FDDK-------- 287
S ++ G S+ GF+ FD ++A +++ LNG+K F +
Sbjct: 153 SRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 212
Query: 288 ----------EWYVGKAQKKYER---------EMELKGKFEQSLKETADKFEGLNL---- 324
Y G + +R +K +F ++ G+NL
Sbjct: 213 LLTQLYQTAARRYTGPLHHQTQRFRLDNLLNASYGVKSRFSPITIDSMTSLAGVNLTGPT 272
Query: 325 ------YVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASK 377
+V NL + L +LF FG +T+ KV+RD +G GFV + +EA+
Sbjct: 273 GAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAM 332
Query: 378 ALTEMNGKMVVSKPLYVALAQRKEER 403
A+ +NG + + L V+ K+ +
Sbjct: 333 AIASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 24/199 (12%)
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEA 278
N+ V L + T+++ K +FG G I S ++RD G+S +GFVN+ DP+DA +++
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LNG K K V A + ++ NLYV L ++S +
Sbjct: 99 LNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSGLPKTMSQKDM 140
Query: 339 KELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395
++LFS++G I + +++ D GISRG GF+ F EA +A+ +NG+ + ++P+ V
Sbjct: 141 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVK 200
Query: 396 LAQRKEERRARLQAQFSQM 414
A ++ QA +Q+
Sbjct: 201 FANNPSQKTG--QALLTQL 217
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 3/177 (1%)
Query: 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 85
AN G A + + YVG+LD + + L++LF Q G VV+V V +D T + GYG+
Sbjct: 11 ANLLGQHAAERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGF 70
Query: 86 VNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALH 145
V + + +A A+ LN L GKPIR+ + +D GA N+FI NLD +D K L+
Sbjct: 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLY 129
Query: 146 DTFSTFGNILS-CKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
DTFS FG I++ K+ D G SRG+GF+ +D+ E++ SAI+ +NG L ++Q+ V
Sbjct: 130 DTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 186
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 20/200 (10%)
Query: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDD 268
+ A++ + YV NL E+ L ++F + G + + V +D + + +GFV F
Sbjct: 16 QHAAERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKN 328
+DA +++ LN K K V KA + K++ D G NL++ N
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGN 118
Query: 329 LDDSISDDKLKELFSEFGTI-TSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKM 386
LD + + L + FS FG I T+ K+MRDP G SRG GF+++ + E + A+ MNG+
Sbjct: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQY 178
Query: 387 VVSKPLYVALAQRKEERRAR 406
+ ++ + V+ A +K+ + R
Sbjct: 179 LCNRQITVSYAYKKDTKGER 198
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 7/147 (4%)
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK K VG AQK E++ ELK KFEQ +E +++G+NLY+KNLDD++ D+ L
Sbjct: 1 MNGKDISGKVISVGCAQKTVEQQAELKWKFEQLKQERISRYQGVNLYIKNLDDTVGDENL 60
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FG+ITS KVM + +G S+G GFV FS+ EA KA+T+MNG ++ SKPLYVALA+
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSP-EAIKAVTKMNGCVMSSKPLYVALAR 118
Query: 399 RKEERRARLQAQFSQMRP-----PVGP 420
R+ + A L Q Q P GP
Sbjct: 119 RRGKGSAYLTDQDMQWVAGKRALPAGP 145
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
KQER S + + N+Y+KNL +T +++L+K F FG ITS VM + DG+SK FGFV
Sbjct: 34 KQERIS---RYQGVNLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 89
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
F P +A ++V +NG K YV A+++
Sbjct: 90 FSSP-EAIKAVTKMNGCVMSSKPLYVALARRR 120
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188
N++IKNLD ++ ++ L FS FG+I S KV + G+S+G+GFV F + E+ K A+ K+
Sbjct: 45 NLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEAIK-AVTKM 102
Query: 189 NGMLLNDKQVFVGPFLRK 206
NG +++ K ++V R+
Sbjct: 103 NGCVMSSKPLYVALARRR 120
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ +LD +V D L F+ G + S +V L RS G+G+V +++ EA
Sbjct: 40 RYQGVNLYIKNLDDTVGDENLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSP-EAI 96
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLD 136
+A+ ++N ++ KP+ + + R+ G G+ ++ + D
Sbjct: 97 KAVTKMNGCVMSSKPLYVALA------RRRGKGSAYLTDQD 131
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
+LY+G+LD V+D L++LF Q G V +V V RD T GYG+V + +A AL
Sbjct: 29 ATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALK 88
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
+N L GK +R+ S +D GA NIF+ NLD +D K ++DTFSTFGNIL+ K+
Sbjct: 89 LMNMVKLYGKSLRLNKSAQDRRNFDVGA-NIFLGNLDPDVDEKTIYDTFSTFGNILTAKI 147
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER 209
D G SRG+GFV FD E++ +A+ +NG + ++ + V +K R
Sbjct: 148 MRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 19/188 (10%)
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEAL 279
+Y+ NL +D L ++F + G + + +V RD G + +GFV F + DA +++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K K + K+ + R ++ G N+++ NLD + + +
Sbjct: 91 NMVKLYGKSLRLNKSAQD-RRNFDV----------------GANIFLGNLDPDVDEKTIY 133
Query: 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
+ FS FG I + K+MRDP GISRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 134 DTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAY 193
Query: 399 RKEERRAR 406
+K+ R R
Sbjct: 194 KKDTRGER 201
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188
++I NLD +D+ L + F G + + V D L G +GYGFV+F NE A A+ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFN---NVYVKNLSETTTEDDLKKIFGEFGII 245
N + L K + + +S D+ F+ N+++ NL E + F FG I
Sbjct: 91 NMVKLYGKSLRL--------NKSAQDRRNFDVGANIFLGNLDPDVDEKTIYDTFSTFGNI 142
Query: 246 TSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+ +MRD + G S+ FGFV+FD + + ++ A+NG+ ++ +V A KK R
Sbjct: 143 LTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTR 198
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 136/275 (49%), Gaps = 29/275 (10%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T+L V L ++ +L LF+ +G+V S ++ RD SLGYG+VNY A +A RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
LN L K I++ SY P+ N++I L +++ K + D FS FG I++ +V
Sbjct: 80 TLNGLRLQSKTIKV--SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
Query: 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRKQERESTADKT 216
D + G SRG F++FD A+ AI NG + + + V A +
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNPVHHQAQRF 197
Query: 217 RFN-----------------------NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
RF+ +++ NL + E L ++FG FG +T+ V+RD
Sbjct: 198 RFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRD 257
Query: 254 AD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
+ K K FGFV + ++AA ++ +LNG + DK
Sbjct: 258 FNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 292
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 22/294 (7%)
Query: 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSA 184
G N+ + L +++ L FS+ G + S K+ D + G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
I+ LNG+ L K + V + E D N+Y+ L T T+ D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVS--YARPSSEVIKDA----NLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 245 ITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG---KAQKKYER 300
I ++ V+ D G S+ F+ FD +A ++ + NG K + A
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNPVH 191
Query: 301 EMELKGKFEQSLKETADKFEGLN----------LYVKNLDDSISDDKLKELFSEFGTITS 350
+ +F + G+N +++ NL + L ++F FG +T+
Sbjct: 192 HQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTN 251
Query: 351 CKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEER 403
KV+RD N +G GFV + EEA+ A+ +NG + K L V+ K +
Sbjct: 252 VKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 305
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
+++ +L ++ L+ +F G V +V+V RD +T + G+G+V EA A+ L
Sbjct: 225 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 284
Query: 102 NFTPLNGKPIRIMY 115
N L K +++ +
Sbjct: 285 NGYRLGDKILQVSF 298
>gi|123975938|ref|XP_001314386.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896695|gb|EAY01839.1| hypothetical protein TVAG_002940 [Trichomonas vaginalis G3]
Length = 307
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 147/291 (50%), Gaps = 21/291 (7%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
RQ +++V +L +S + LF++ G V++V L + + Y +V + EA
Sbjct: 11 RQPKDNAIHVSNLPISATVEFIRTLFSECGTVINVF----LKNKPTGSYCFVEFADKEEA 66
Query: 95 TRALDELNFTPLNGKPIRIMYSYRDPTIR-KSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
+A+ + N+T LNG+ I I + R SG GN+F++ +D+SI+ LH+ FS FG
Sbjct: 67 EKAVRDFNYTKLNGESIVITLTNHGIMQRIVSGEGNLFVRGIDESIEAPQLHELFSHFGE 126
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER---- 209
++SCK+ + G+ RGY +VQF N A+ +L +N K + + F+ + R
Sbjct: 127 VISCKIPVLN-GKPRGYAYVQFANPADGDRAMKELADSTINGKAITIEKFINRGMRQPNK 185
Query: 210 ---ESTADKTRFNNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265
++ A F N+++KNL E+ T DL ++F E+G + S ++ + K GF
Sbjct: 186 ATEQNIATDPTFTNIFIKNLPESINTLLDLLRLFQEYGQVVSARIVPE-----KRSGFAK 240
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE--MELKGKFEQSLKE 314
D + A R+V LNG+ ++ ER M + EQ+++E
Sbjct: 241 MIDHESAVRAVLGLNGRVIYGHTISCCRSLSLSERAAFMNRNNEEEQAVEE 291
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 31/295 (10%)
Query: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
R P +R+ I + NL S + + FS G +++ + G Y FV+F +
Sbjct: 7 RTP-LRQPKDNAIHVSNLPISATVEFIRTLFSECGTVINVFLKNKPTG---SYCFVEFAD 62
Query: 178 EESAKSAIDKLNGMLLNDKQVFV-----GPFLRKQERESTADKTRFNNVYVKNLSETTTE 232
+E A+ A+ N LN + + + G R E N++V+ + E+
Sbjct: 63 KEEAEKAVRDFNYTKLNGESIVITLTNHGIMQRIVSGEG--------NLFVRGIDESIEA 114
Query: 233 DDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
L ++F FG + S + +GK + + +V F +P D R+++ L + K +
Sbjct: 115 PQLHELFSHFGEVISCKIPV-LNGKPRGYAYVQFANPADGDRAMKELADSTINGKAITI- 172
Query: 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD--DKLKELFSEFGTITS 350
+K R M K + T F N+++KNL +SI+ D L+ LF E+G + S
Sbjct: 173 --EKFINRGMRQPNKATEQNIATDPTF--TNIFIKNLPESINTLLDLLR-LFQEYGQVVS 227
Query: 351 CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
+++ + + SGF E A +A+ +NG+++ + + ER A
Sbjct: 228 ARIVPE-----KRSGFAKMIDHESAVRAVLGLNGRVIYGHTISCCRSLSLSERAA 277
>gi|123449065|ref|XP_001313255.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895132|gb|EAY00326.1| hypothetical protein TVAG_307720 [Trichomonas vaginalis G3]
Length = 274
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 136/270 (50%), Gaps = 23/270 (8%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNYNAAHEATRALDE 100
++V +L + D L F G V++V S R+ G + ++ ++ A RA+
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLNVS-----SKHRANGNFAFIQFDNKESAIRAVAN 63
Query: 101 LNFTPLNGKPIRIMY-SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159
N+T LNG+PI I Y S I SG GNI IK LD++I+ LH+ FS FG ++SCKV
Sbjct: 64 YNYTKLNGEPIIITYASIEYMRIIHSGLGNICIKGLDENIEASQLHELFSNFGEVISCKV 123
Query: 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ--------ERES 211
G++RG+ ++QF N A A +L +N K + + +++K R+S
Sbjct: 124 PM-QYGKNRGFAYIQFKNPMDADRARQELADATINGKPISIEAYVKKDNPNKPQYVNRKS 182
Query: 212 TADKTRFNNVYVKNLSETT-TEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270
+ F N++++NL ++ + DL +F +FG + S ++ D K GF N D D
Sbjct: 183 GMNDV-FTNIFIRNLPDSVRSLADLVTLFVDFGPVISARIILD-----KKAGFCNMADHD 236
Query: 271 DAARSVEALNGKKFDDKEWYVGKAQKKYER 300
A R++ LNGK +A K ER
Sbjct: 237 SAVRALNGLNGKILYGNTLITCRALTKEER 266
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 126/284 (44%), Gaps = 26/284 (9%)
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
I + NL + + L F GN+L+ + G + F+QFDN+ESA A+ N
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLNVSSKHRANGN---FAFIQFDNKESAIRAVANYN 65
Query: 190 GMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
LN + + + + R + N+ +K L E L ++F FG + S
Sbjct: 66 YTKLNGEPIIITYASIEYMR---IIHSGLGNICIKGLDENIEASQLHELFSNFGEVISCK 122
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK----EWYVGKAQKKYEREMELK 305
V GK++ F ++ F +P DA R+ + L + K E YV K + + K
Sbjct: 123 VPMQY-GKNRGFAYIQFKNPMDADRARQELADATINGKPISIEAYVKKDNPNKPQYVNRK 181
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSI-SDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
D F N++++NL DS+ S L LF +FG + S +++ D + +
Sbjct: 182 SGMN-------DVFT--NIFIRNLPDSVRSLADLVTLFVDFGPVISARIILD-----KKA 227
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
GF + + A +AL +NGK++ L A KEER A Q
Sbjct: 228 GFCNMADHDSAVRALNGLNGKILYGNTLITCRALTKEERLAFHQ 271
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 19/188 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++ + LD ++ SQL++LF+ G+V+S +V R G+ Y+ + +A RA E
Sbjct: 93 NICIKGLDENIEASQLHELFSNFGEVISCKVPMQYGKNR--GFAYIQFKNPMDADRARQE 150
Query: 101 LNFTPLNGKPIRI-MYSYRDP------TIRKSGAG----NIFIKNLDKSIDNKA-LHDTF 148
L +NGKPI I Y +D RKSG NIFI+NL S+ + A L F
Sbjct: 151 LADATINGKPISIEAYVKKDNPNKPQYVNRKSGMNDVFTNIFIRNLPDSVRSLADLVTLF 210
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG ++S ++ D + GF + +SA A++ LNG +L + L K+E
Sbjct: 211 VDFGPVISARIILD-----KKAGFCNMADHDSAVRALNGLNGKILYGNTLITCRALTKEE 265
Query: 209 RESTADKT 216
R + K+
Sbjct: 266 RLAFHQKS 273
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,287,357,222
Number of Sequences: 23463169
Number of extensions: 312962184
Number of successful extensions: 1156356
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16282
Number of HSP's successfully gapped in prelim test: 11910
Number of HSP's that attempted gapping in prelim test: 970530
Number of HSP's gapped (non-prelim): 115554
length of query: 467
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 321
effective length of database: 8,933,572,693
effective search space: 2867676834453
effective search space used: 2867676834453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)