BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012257
(467 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/461 (69%), Positives = 387/461 (83%), Gaps = 14/461 (3%)
Query: 1 MAQVQVQPQAP--VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQ+Q Q P A +PAT+G A A QF +TSLYVGDLD +V DSQL+D
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGAT------ATQFGNTSLYVGDLDFNVTDSQLFD 54
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
F QMG VV+VRVCRDL TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+R
Sbjct: 55 AFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++R+SGAGNIFIKNLD+SID+KALHDTFS+FGNI+SCKVA DS GQS+GYGFVQ+ NE
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
ESA+ AI+KLNGMLLNDKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGE+G ITS VM+D +GKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK
Sbjct: 235 FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL+ ++EQ+LKE ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TS KVMRDPN
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----- 413
G S+GSGFVAF+T EEA++A+++++GKM+ SKPLYVA+AQRKE+RR RLQAQFSQ
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVA 414
Query: 414 MRPPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQVIYSF 453
M+P VGPRMP+YPP PG+GQQ+FYGQ PP +IPPQ Y +
Sbjct: 415 MQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGY 455
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 258/456 (56%), Positives = 323/456 (70%), Gaps = 19/456 (4%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRM 422
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQA FSQ+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP-GPMS 431
Query: 423 PMY---PPVAPGLGQQLFYGQ-GPPIIPPQVI-YSF 453
+ PG Q ++ GQ G ++P Q I Y F
Sbjct: 432 GFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGF 467
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/425 (57%), Positives = 313/425 (73%), Gaps = 18/425 (4%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER---ESTADK 215
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R ES A
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
+ F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +
Sbjct: 237 S-FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVA 295
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D
Sbjct: 296 VEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVND 355
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
+KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVA
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 396 LAQRKEERRARLQAQFSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPP 443
LAQRKEER+A LQ+ F+Q+R P G P+ +PP P G +F G G
Sbjct: 416 LAQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 474
Query: 444 IIPPQ 448
++P Q
Sbjct: 475 LVPSQ 479
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 288/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/382 (57%), Positives = 286/382 (74%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQ 384
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/382 (57%), Positives = 287/382 (75%), Gaps = 4/382 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ 413
LYVALAQRKEER+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/376 (55%), Positives = 285/376 (75%), Gaps = 2/376 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LFN +G V S+RVCRD TRRSLGY YVN++ + +A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP++RK G GN+FIKNLD +IDNKALHDTFS FG ILSC
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D LG ++GYGFV FD+ ESA +AI+ +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 257
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KNL TE + +FG+FG ITS ++++D + K + FGFVN+ + + A ++
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K++ K+ YVG+AQKK+ERE EL+ ++EQ E +K++G+NL++KNL D + D
Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LK FS FGTITS K+M D G S+G GFV ++T EEA+KA+TEMN +M+ KPLYVA
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 396 LAQRKEERRARLQAQF 411
LAQRKE RR++L+AQ
Sbjct: 438 LAQRKEVRRSQLEAQI 453
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/399 (55%), Positives = 291/399 (72%), Gaps = 4/399 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + G+P+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN + ++ LK++FG++G S VM D +GKSK FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ F FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q V P+ P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP 401
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/399 (55%), Positives = 290/399 (72%), Gaps = 4/399 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK+ FG++G S VM D GKS+ FGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++V+ +NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
I D++L++ F+ FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KP
Sbjct: 304 GIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAP 430
LYVALAQRKEER+A L Q+ Q V P+ P P
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP 401
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/428 (53%), Positives = 298/428 (69%), Gaps = 29/428 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 440
RKEER+A L Q+ Q MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 441 GPPIIPPQ 448
G P+ P Q
Sbjct: 424 G-PVTPTQ 430
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/516 (47%), Positives = 321/516 (62%), Gaps = 81/516 (15%)
Query: 2 AQVQVQPQAPVAVAAQPSPATNG----IANNGGVGDARQFV----------STSLYVGDL 47
A+ P A P ATNG +A + G+A Q S SLYVG+L
Sbjct: 3 AETATNPPVDTTPGAAPESATNGSNANVAADTTAGEASQTTSSTTPTAQPHSASLYVGEL 62
Query: 48 DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107
D SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL++LN+T +
Sbjct: 63 DPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIK 122
Query: 108 GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS 167
G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S
Sbjct: 123 GRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNS 182
Query: 168 RGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKN 225
+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K F NVYVKN
Sbjct: 183 KGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKN 242
Query: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKF 284
+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +VEALN K F
Sbjct: 243 IDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDF 302
Query: 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE 344
++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D+KL+ELFS
Sbjct: 303 KGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSS 362
Query: 345 FGTITSCKVMRD------------------------------------------------ 356
+GTITS KVMRD
Sbjct: 363 YGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESK 422
Query: 357 -----PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 423 KSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASI 482
Query: 412 SQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
Q R + P+ M P V G GQQ F
Sbjct: 483 -QARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF 517
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/465 (49%), Positives = 302/465 (64%), Gaps = 58/465 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKES 405
Query: 359 ------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++
Sbjct: 406 EEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 465
Query: 407 LQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLFYGQG 441
L+A Q R + P+ M P V G GQQ F G
Sbjct: 466 LEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAG 509
Score = 168 bits (426), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/467 (49%), Positives = 302/467 (64%), Gaps = 60/467 (12%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPK 405
Query: 359 --------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR
Sbjct: 406 ESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 465
Query: 405 ARLQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLFYGQG 441
++L+A Q R + P+ M P V G GQQ F G
Sbjct: 466 SQLEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAG 511
Score = 168 bits (425), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/456 (49%), Positives = 295/456 (64%), Gaps = 64/456 (14%)
Query: 18 PSPA--TNGIANNGGVGD---------ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV 66
P+PA TNG +N + Q S SLYVG+LD SV ++ LY+LF+ +GQV
Sbjct: 9 PAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQV 68
Query: 67 VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSG 126
S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +RK+G
Sbjct: 69 ASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTG 128
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186
GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 187 KLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGI 244
+NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F +FG
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE 248
Query: 245 ITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ERE EL
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEEL 308
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-------- 356
+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 309 RKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETAT 368
Query: 357 -------------------------------------------PNGISRGSGFVAFSTAE 373
P G S+G GFV FS+ +
Sbjct: 369 PESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPD 428
Query: 374 EASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 429 EASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 464
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 167/344 (48%), Gaps = 70/344 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAA 183
Query: 95 TRALDELNFTPLNGKPIRIMY--SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
A+ +N LN K + + + S +D + K+ NI+IKN+D ++++ F
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
FG I S ++ DS G+SRG+GFV F ESA++A++++N + ++++VG +K E
Sbjct: 244 EKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHE 303
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD- 255
RE A K + N+YVKNL++ +D L+++FG +G ITS VMRD
Sbjct: 304 REEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAP 363
Query: 256 --------------------------------------------------GKSKCFGFVN 265
GKSK FGFV
Sbjct: 364 VETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVC 423
Query: 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
F PD+A+++V +N + + K YV AQ+K R +L+ +
Sbjct: 424 FSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 467
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 50/151 (33%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST---------------- 77
A ++ +LYV +L V+D +L +LF G + S +V RD +
Sbjct: 320 ASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANK 379
Query: 78 ----------------------------------RRSLGYGYVNYNAAHEATRALDELNF 103
+S G+G+V +++ EA++A+ E+N
Sbjct: 380 ENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQ 439
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+NGKP+ + + R R +I +N
Sbjct: 440 RMVNGKPLYVALAQRKDVRRSQLEASIQARN 470
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/408 (53%), Positives = 300/408 (73%), Gaps = 15/408 (3%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A +A+ ++GIA N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVC
Sbjct: 50 ADSAEEQGESSGIAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVASIRVC 99
Query: 73 RDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFI 132
RD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R+SG GNIFI
Sbjct: 100 RDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFI 159
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNL +IDNKALHDTFS FG ILS KVATD LGQS+ +GFV ++ EE+A++AI+ +NGML
Sbjct: 160 KNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGML 219
Query: 193 LNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++V+VG + K++RES + K + N+YVKN+ TE + +++F FG ITS +
Sbjct: 220 LNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYL 279
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+DA+GKSK FGFVNF++ + AA++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 280 EKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEA 339
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
E K++G+NL+VKNLD+ I +KL+E F FGTITS KVM D G S+G GFV FS
Sbjct: 340 VRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFS 399
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMR 415
T EEA+KA+TEMN +MV KPLYVALAQRK+ RR++L+ Q +QMR
Sbjct: 400 TPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMR 447
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/415 (53%), Positives = 290/415 (69%), Gaps = 15/415 (3%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYP-------PVAPGLGQQLFYGQGP 442
RKEER+A L Q+ Q MR GP + + P P + FY P
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPNP 424
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/385 (57%), Positives = 284/385 (73%), Gaps = 5/385 (1%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM 422
QRKEER+A L +Q+ MR G RM
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRM 385
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/429 (51%), Positives = 296/429 (68%), Gaps = 18/429 (4%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A
Sbjct: 7 EYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAE 66
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RALD +NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FG+IL
Sbjct: 67 RALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDIL 126
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--A 213
SCKV D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A
Sbjct: 127 SCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGA 185
Query: 214 DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
F NVY+KN E + LK+IF FG S VM D G+S+ FGFVN+ + ++A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQ 245
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
++V +NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I
Sbjct: 246 KAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGI 305
Query: 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393
DD+L++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLY
Sbjct: 306 DDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 394 VALAQRKEERRARLQAQFSQ----MRPPVGPRMPMYP-------PVAPGLGQQLFYGQGP 442
VALAQRKEER+A L Q+ Q MR GP + + P P + FY P
Sbjct: 365 VALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNP 424
Query: 443 --PIIP-PQ 448
P+ P PQ
Sbjct: 425 VAPVRPAPQ 433
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/415 (50%), Positives = 290/415 (69%), Gaps = 43/415 (10%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 58 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 118 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 237
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+++ +++F +FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
DKL+ +FSE+G ITS KVMRD
Sbjct: 358 DKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKG 417
Query: 358 ---NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 418 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 472
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 161/290 (55%), Gaps = 15/290 (5%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT N+++KNL L F FG I
Sbjct: 119 EELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNI 174
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S V +D G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 175 LSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ---- 230
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+YVKN+++ ++D++ +ELF++FG +TS + RD G SRG G
Sbjct: 231 SKFEEM------KANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFG 284
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
FV F+T E A++A+ E+NGK + LYV AQ+K ER L+ + R
Sbjct: 285 FVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 158 bits (399), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 166/334 (49%), Gaps = 60/334 (17%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ + ++++ +LD ++++ L+D F G ++S +V +D S GYG+V+Y A
Sbjct: 143 RKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAA 201
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
++A+ +N LN K + + + +D + K+ N+++KN++ + ++ + F
Sbjct: 202 SQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELF 261
Query: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
+ FG + S +A D G+SRG+GFV F E+A A+D+LNG + ++VG +K E
Sbjct: 262 AKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHE 321
Query: 209 RES------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD- 255
RE A+K + N+Y+KNL + +D L+ +F E+G ITS VMRD+
Sbjct: 322 REEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLI 381
Query: 256 ----------------------------------------GKSKCFGFVNFDDPDDAARS 275
GKSK FGFV F +PDDA ++
Sbjct: 382 EGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKA 441
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V +N + D K YV AQ+K R+ +L+ +
Sbjct: 442 VTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQ 475
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/424 (51%), Positives = 304/424 (71%), Gaps = 24/424 (5%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T SLGY YVN++ +A+++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+T + GKP RIM+S RDP++RK G+GNI+IKNL +IDNK+LH+TFSTFGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G SRG+GFV F+NE A+ AI+ ++GML+ND++V+V + K++R+S + K +F
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN+ + T++++ +++FG++G ITS + +D++GK + FGFVNF+D AA++V+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN +F ++ YVG+AQKKYER ELK ++E + E K++G+NL+VKNLDDSI D+KL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE F+ FGTITS KVMRD G SRG GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 399 RKEERRARLQAQF---SQMR----------PPVG-PRMPMYPPVAPGLGQQLFYGQGPPI 444
RKE RR +L Q +QMR G P M PP ++YG PP
Sbjct: 399 RKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPP--------MYYGGIPPR 450
Query: 445 IPPQ 448
+P Q
Sbjct: 451 VPFQ 454
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNF 266
E E+ +T ++YV L T +E L IF G ++S V RDA S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
D + +++E LN K + +Q+ + SL++ N+Y+
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQR------------DPSLRKKGSG----NIYI 130
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL +I + L E FS FG I SCKV D NG+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
+ + +YVAL K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++D + + +LF + G++ S + +D S + G+G+VN+ A +A+D
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 100 ELNFTPLNGKPI---RIMYSY-------------RDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN G+ + R Y R + K N+F+KNLD SID++
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F+ FG I S KV D G SRG+GFV F E A AI + N ++ K ++V
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 204 LRKQER 209
RK+ R
Sbjct: 398 QRKEVR 403
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD S++D +L + F G + S +V RD T S G+G+V ++ EAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEAT 376
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARN 415
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/465 (48%), Positives = 301/465 (64%), Gaps = 64/465 (13%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 44 QPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 103
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNIL 155
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNIL
Sbjct: 104 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL 163
Query: 156 SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD- 214
SCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S +
Sbjct: 164 SCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEE 223
Query: 215 -KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273
K F NVY+KNL + +E++ +++F +FG ITS + RD +GKS+ FGFVN+ D A
Sbjct: 224 MKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQ 283
Query: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI 333
+V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D I
Sbjct: 284 AAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDI 343
Query: 334 SDDKLKELFSEFGTITSCKVMRDPN----------------------------------- 358
D+KL+E+F+ +GTITS KVMRD N
Sbjct: 344 DDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKES 403
Query: 359 ----------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
G S+G GFV FS+ +EASKA+TEMN +M+ KPLYVALAQRK+
Sbjct: 404 GDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDV 463
Query: 403 RRARLQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLF 437
RR++L+A Q R + P+ M P V G GQQ F
Sbjct: 464 RRSQLEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGF 507
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/383 (55%), Positives = 282/383 (73%), Gaps = 5/383 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N A A
Sbjct: 33 VSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTA 92
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++LNFTP+ GK RIM+S RDP++RK GAGNIFIKNL IDNKAL+DTFS FGNILS
Sbjct: 93 IEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS 152
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD G+S+G+G+V F+ +ESA AID LNGMLLN ++++VGP L K+ERES + K
Sbjct: 153 KVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMK 212
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN++ TT+ + +++ +FG S + R +G++K FGFVNF + +DA +
Sbjct: 213 ANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKC 272
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN +F + YV +AQKKYER+ ELK ++E + E K++G+NL++KNLDDSI D
Sbjct: 273 VEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDD 332
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+E F+ +GTITS KVM NG S+G GFV FST EEA+KA+TE N ++V KPLYVA
Sbjct: 333 KKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Query: 396 LAQRKEERRARLQAQF---SQMR 415
+AQRK+ RR++L Q +QMR
Sbjct: 393 IAQRKDVRRSQLAQQIQARNQMR 415
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++L + L DKQ + E +T ++YV +L + +E L IF G +
Sbjct: 10 EQLENLSLQDKQ--------EGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAV 61
Query: 246 TSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
+S V RDA K+ + +VNF+D D A ++E LN K + +Q+
Sbjct: 62 SSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR-------- 113
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ SL++ N+++KNL I + L + FS FG I S KV D G S+G
Sbjct: 114 ----DPSLRKKG----AGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGF 165
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G+V F E AS+A+ +NG ++ + +YV K+ER ++ +
Sbjct: 166 GYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFE 209
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/386 (54%), Positives = 279/386 (72%), Gaps = 8/386 (2%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGP 420
RKEER+A L Q+ Q MR GP
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGP 395
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/497 (46%), Positives = 306/497 (61%), Gaps = 73/497 (14%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
AP A + S T+ NN Q S SLYVG+LD SV ++ LY+LF+ +GQV S+
Sbjct: 28 APEVTAVESSSPTSPNNNN-------QPHSASLYVGELDPSVTEAMLYELFSSIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN
Sbjct: 81 RVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +N
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLNDK+VFVG + K++R+S D K F N+Y+KN+ TE++ +KIF +FG ITS
Sbjct: 201 GMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ RD +GKS+ FGFVN+ + A +V+ ++ K+ ++ YVG+AQKK+ERE EL+ +
Sbjct: 261 ATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR----- 362
+E + E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD R
Sbjct: 321 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPD 380
Query: 363 ------------------------------------------------GSGFVAFSTAEE 374
G GFV FS+ +E
Sbjct: 381 SEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDE 440
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG----------PRMPM 424
ASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R + P+ M
Sbjct: 441 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTIRQQQAAAAAGMPQPYM 499
Query: 425 YPPVAPGLGQQLFYGQG 441
P V G GQQ F G
Sbjct: 500 QPAVFYGPGQQGFIPAG 516
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/403 (51%), Positives = 294/403 (72%), Gaps = 8/403 (1%)
Query: 11 PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVR 70
P A QP+ NN + +TSLYVG+LD SV ++ L+++F+ +G V S+R
Sbjct: 23 PAPAAEQPAVGNGEQRNNADAAN-----NTSLYVGELDPSVTEAMLFEIFSMIGTVASIR 77
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130
VCRD TRRSLGY YVN+ A + RA+++LN++ + +P RIM+S RDP +R++G GNI
Sbjct: 78 VCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNI 137
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
FIKNLD IDNKALHDTF+ FGNILSCKVAT+ G S GYGFV ++ E+A++AI +NG
Sbjct: 138 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNG 196
Query: 191 MLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
MLLNDK+V+VG + ++ER++ ++TR F NVY KN+ T+D+ +K+F +FG ITS
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC 256
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ RD DGKSK FGFVNF+D ++A ++V+ L+ F ++ +V +AQKK ERE EL+ +
Sbjct: 257 VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
E + E KF+G+NLY+KN+ +S D++L+E F+ FG ITSCK+MR P+G+SRG GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
+S EEA+KA++EMNGKM+ ++PLYVALAQRK+ RR +L+AQ
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQI 419
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/419 (52%), Positives = 291/419 (69%), Gaps = 15/419 (3%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+S+SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVNY +A RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN TP+ GK RIM+S RDP++RKSG GN+FIKNLDK ID+KAL+DTFS FGNILSC
Sbjct: 68 LDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD S+G+GFV ++ +ESA AI K+NGM++N ++VFVGPF +ER + +
Sbjct: 128 KVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE-VK 186
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NV+ KNLSE D LK++ ++G IT+ +M D GKSK FGF NF+ + A VE
Sbjct: 187 FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVE 246
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
NGK F K Y G+AQKK ERE ELK FE K++G+NLY+KN+DDSI +DK
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDNDK 299
Query: 338 LKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E+FS+FGTITS VM+D S+G GFV ++ +EA++A+TEMNG+M+ +KPLYVAL
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQVIYSFLL 455
AQRK+ RRA+L+ Q Q + G R M P G +F+ P + PQV+Y ++
Sbjct: 360 AQRKDIRRAQLEMQHQQ-KFKTGIRQQMPPTYGSG---PVFFTPAP--VNPQVVYQQMM 412
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ ++D S+++ +L ++F+Q G + S V +D S G+G+V Y A EAT
Sbjct: 280 KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N + KP+ + + R
Sbjct: 340 RAVTEMNGRMIGTKPLYVALAQR 362
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 288/382 (75%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L Q +QMR
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMR 418
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/426 (51%), Positives = 292/426 (68%), Gaps = 23/426 (5%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLYVKNLDD D
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 396 LAQRKEERRARLQAQFSQ--------------MRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
LAQRK+ RR L++Q +Q M+ +G M YPP+ PG GQ +
Sbjct: 404 LAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPM-PGYGQPM----- 457
Query: 442 PPIIPP 447
P +PP
Sbjct: 458 -PGMPP 462
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/426 (51%), Positives = 292/426 (68%), Gaps = 23/426 (5%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLYVKNLDD D
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 396 LAQRKEERRARLQAQFSQ--------------MRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
LAQRK+ RR L++Q +Q M+ +G M YPP+ PG GQ +
Sbjct: 404 LAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPM-PGYGQPM----- 457
Query: 442 PPIIPP 447
P +PP
Sbjct: 458 -PGMPP 462
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/375 (54%), Positives = 276/375 (73%), Gaps = 2/375 (0%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD ++ ++ LYD+F+ +G + S+RVCRD T+ SLGY YVNY +A+
Sbjct: 49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAI 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
ELN+ +NG+P RIM+S RDP IRK G+GNIFIKNL +IDNKALH+TFSTFG +LSCK
Sbjct: 109 QELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G SRG+GFV F E AK AI+ +NGML+N +V+V + K++R S + K
Sbjct: 169 VALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ TT+++ +++F ++G I S A+ +DA+GK K FGFVNF D + AA++V
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F + YVG+AQKKYER ELK ++EQ E KF+G+NL++KNLDDSI D+
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDE 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE F+ +GTITS +VMRD G S+G GFV FS+ EEA+KA+TE N ++V KPLYVA+
Sbjct: 349 KLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 397 AQRKEERRARLQAQF 411
AQRK+ RR++L Q
Sbjct: 409 AQRKDVRRSQLAQQI 423
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/463 (47%), Positives = 308/463 (66%), Gaps = 58/463 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +N MLLN+K+V+VG + K++R+S + K
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+S T+++ + +F ++G +TS+++ RD++GKS+ FGFVNF + AA++V
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D I DD
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSE+G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF 411
G S+G GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+ +L+A
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 412 SQMRPPVGPRMPMYPPVAPGLGQQ-----LFY--GQGPPIIPP 447
Q R + RM A GL QQ ++Y GQ P +PP
Sbjct: 484 -QARNQL--RMQQAAAQA-GLPQQYMQTPVYYAPGQQPNFMPP 522
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/382 (54%), Positives = 292/382 (76%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD +++SLGY YVNY+ + +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ G+P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTFSTFG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD +GQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ +E+DLKK+F +G ITS + +DA+GKSK FGFVN++ + A ++V
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K+ + ++ YVG+AQKK ER ELK ++E + E K++G+NL++KNLDD+I +
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++L+ Q +QMR
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMR 432
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/432 (51%), Positives = 304/432 (70%), Gaps = 21/432 (4%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
+A+ ++G+A N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD
Sbjct: 37 SAEEQGESSGVAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRD 86
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+++SLGY YVNY+ + +A++ELN+ P+ G+P RIM+S RDP+ R+SG GNIFIKN
Sbjct: 87 AVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKN 146
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L +IDNKALHDTFS FG ILSCKVATD GQS+ +GFV ++ E+A++AI+ +NGMLLN
Sbjct: 147 LHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 206
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++VFVG + K++RES + K F N+YVKN+ +E+ +K+F FG ITS + +
Sbjct: 207 DREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEK 266
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D DGKSK FGFVNF+D + A ++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 267 DQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
E K++G+NL+VKNLDD+I +KL+E F FGTITS KVM D G S+G GFV F+T
Sbjct: 327 LEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTP 386
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGL 432
EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q +M M A GL
Sbjct: 387 EEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARN-----QMRMQNAAAGGL 441
Query: 433 GQQ----LFYGQ 440
Q +FYGQ
Sbjct: 442 PGQFIPPMFYGQ 453
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/379 (54%), Positives = 275/379 (72%), Gaps = 4/379 (1%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQFSQ 413
ALAQRKEER+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 166/290 (57%), Gaps = 21/290 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
+++V +LD S+N+ LYD + G ++S V D + S GYG+V++ A RA+ +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKK 157
Query: 101 LNFTPLNGKPIRI-MYSYRDPTIRKSGA-----GNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LNG+ + + + R + GA N++IKN + +D++ L D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 155 LSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD 214
LS KV TD G+S+G+GFV F+ E A+ A+D++NG LN KQ++VG +K ER++
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 215 KT----------RFN--NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262
+T R+ N+YVKNL + ++ L+K F FG ITS VM + G+SK FG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
FV F P++A ++V +NG+ K YV AQ+K ER+ L ++ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 166/298 (55%), Gaps = 16/298 (5%)
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDN 177
+P+ ++++ +L + L++ FS G ILS ++ D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKK 237
+ A+ A+D +N ++ K V + +R+ + K+ N++VKNL ++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 238 IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297
FG I S V+ D +G SK +GFV+F+ + A R+++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357
ERE EL + A +F N+Y+KN + + D++LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+G S+G GFV+F E+A KA+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/382 (52%), Positives = 280/382 (73%), Gaps = 5/382 (1%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD SV ++ L+++FN +G V SVRVCRD TRRSLGY YVN++ + RAL
Sbjct: 45 NASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ +P RIM+S RDP +RK+GAGNI+IKNLD +IDNKALHDTFS FG ILSCK
Sbjct: 105 EELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
+ATD G SRG+GFV +++ ESA+SAI +NGMLLNDK+VFVGP + K +R + + K
Sbjct: 165 IATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKN 224
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NV++KNL TE + +++ +FG +S + + +GK FGFV++ + D A +++
Sbjct: 225 SFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ +F + + G+A+KKYER EL+ ++E S E +K++G+NLY+KNLDD+I DD
Sbjct: 285 DGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDD 344
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ GTITS KVM D G S+G GFV +S+ EEA+KA+TEMN ++V KPLYV L
Sbjct: 345 KLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVL 404
Query: 397 AQRKEERRARLQAQF---SQMR 415
AQRK+ RR++LQ Q +QMR
Sbjct: 405 AQRKDVRRSQLQQQIQAKNQMR 426
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/501 (44%), Positives = 308/501 (61%), Gaps = 68/501 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A P+P T A Q S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVPAASGDAPTPTT-------AAQQAHQN-SASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ T++D +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + AA +V+ LN +F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM------- 354
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KV+
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKK 371
Query: 355 ---------------------------RDPNGISRGSG-------------------FVA 368
+ NG +G FV
Sbjct: 372 DEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVC 431
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPV 428
FS +EA+KA+TEMN KM+ KPLYVALAQRK+ R+ +L+A Q R + RM
Sbjct: 432 FSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATI-QARNQL--RMQQQQQQ 488
Query: 429 APGLGQQLFY--GQGPPIIPP 447
G Q+F GQ P + PP
Sbjct: 489 QFGGIPQMFIAPGQQPMMYPP 509
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/414 (51%), Positives = 297/414 (71%), Gaps = 14/414 (3%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN++ + +RA++EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ ++G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D LGQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K F
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL+ ++IF FG +TS + D +GKS+ FGFVNF++ + A +V+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+ D ++ YVG+AQKK ER ELK +E + E K++G+NL+VKNLDDSI +KL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 400 KEERRARLQAQF---SQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPP 447
K+ RR++L+ Q +QM RM A GQ +FYGQ P PP
Sbjct: 420 KDVRRSQLEQQIQARNQM------RMQNAAAAAGMPGQFMSPMFYGQQPGFFPP 467
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/445 (47%), Positives = 307/445 (68%), Gaps = 12/445 (2%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
APVA + +G S SLYVG+L+ SVN++ L+++F+ +GQV S+
Sbjct: 21 APVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD T++SLGY YVN++ + +A+++LN++ + G+P RIM+S RDP++R++G GN
Sbjct: 81 RVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNL +IDNKALHDTF+ FG ILSCKVATD +G S+ +GFV ++ E+A++AI+ +N
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLND++V+VG + K++RES + K F NVY KN+ +E++ KK+F +G ITS
Sbjct: 201 GMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ +D +GKSK FGFVNF++ + A ++V+ LN K+ + ++ YVG+AQKK ER ELK +
Sbjct: 261 IYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+E + E K++G+NL++KNLDD+I +KL+E F FG+ITS +VM D G S+G GFV
Sbjct: 321 YENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFV 380
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPP 427
FS+ EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q +M M
Sbjct: 381 CFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARN-----QMRMQNA 435
Query: 428 VAPG--LGQ---QLFYGQGPPIIPP 447
A G GQ +FYGQ P PP
Sbjct: 436 AATGGIPGQFIPPMFYGQQPGFFPP 460
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 252/345 (73%), Gaps = 3/345 (0%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A P+P + + +A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 26 AAPAPEVTAVESTTAP-NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDA 84
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNL
Sbjct: 85 VTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 144
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLND
Sbjct: 145 DSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLND 204
Query: 196 KQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K+VFVG + K++R+S + K F NVY+KN+ + TE++ +++F +FG ITS + RD
Sbjct: 205 KKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD 264
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+GKS+ FGFVNF + A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 265 QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARL 324
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD N
Sbjct: 325 EKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 15/306 (4%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRG 169
+ + S P + + ++++ LD S+ L++ FS+ G + S +V D++ + S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
Y +V ++N + A++ LN L+ K + +R+ KT NV++KNL
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG K +R+ KFE+ K N+Y+KN+D +++++ +ELF +FG IT
Sbjct: 208 FVGHHISKKDRQ----SKFEEM------KANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K ER L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRK 317
Query: 410 QFSQMR 415
Q+ R
Sbjct: 318 QYEAAR 323
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 13/102 (12%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTI 488
Query: 419 G----------PRMPMYPPVAPGLGQQLFY-GQ-GPPIIPPQ 448
P+ M P V G GQQ F GQ G PPQ
Sbjct: 489 RQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQ 530
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 2/327 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KNL +D+ +K+F +FG ITS + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN 358
I D+KL+ELF +GTITS KVMRD N
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTN 374
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE 271
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 272 GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 63/106 (59%), Gaps = 13/106 (12%)
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
+ P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QA 486
Query: 415 RPPVG----------PRMPMYPPVAPGLGQQLFY--GQGPPIIPPQ 448
R + P+ M P V G GQQ F GQ PPQ
Sbjct: 487 RNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQ 532
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
A ++ +LYV +L ++D +L +LF G + S +V RD + R
Sbjct: 332 ASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNVER 377
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 248/322 (77%), Gaps = 3/322 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S D K
Sbjct: 179 KVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN++ T+D+ + +F ++G +TS+++ RD + GKS+ FGFVNF +DA++
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LN K+F + YVG+AQKK+ERE EL+ +E + +E A K++G+NLY+KNLDD +
Sbjct: 299 AVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 335 DDKLKELFSEFGTITSCKVMRD 356
D+KL++LFSEFG ITS KVMRD
Sbjct: 359 DEKLRQLFSEFGPITSAKVMRD 380
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S V +D +G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGIS 361
E+K F N+YVKN++ ++DD+ + LF ++G +TS + RD G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
RG GFV F++ E+ASKA+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 165/345 (47%), Gaps = 71/345 (20%)
Query: 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94
R+ ++++ +LD+++++ L+D F G ++S +V +D S GYG+V+Y A
Sbjct: 144 RKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAA 202
Query: 95 TRALDELNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTF 148
++A+ +N LN K + + + +D + K+ NI++KN++ + + F
Sbjct: 203 SQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLF 262
Query: 149 STFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207
+G++ S +A D G+SRG+GFV F + E A A+ +LN + + ++VG +K
Sbjct: 263 EKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKH 322
Query: 208 EREST------------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA- 254
ERE A K + N+Y+KNL + ++ L+++F EFG ITS VMRD+
Sbjct: 323 EREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSI 382
Query: 255 -----------------------------DGKSK-----------------CFGFVNFDD 268
D K + FGFV F +
Sbjct: 383 TEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFAN 442
Query: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
PDDA ++V +N + ++K YV AQ+K R K + EQS++
Sbjct: 443 PDDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 11/90 (12%)
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPM 424
GFV F+ ++A+KA+ EMN +MV +KPLYVALAQRK+ R+ +L+ Q Q R + RM
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQARNQL--RM-Q 491
Query: 425 YPPVAPGLGQQ-----LFYGQG--PPIIPP 447
A G+ QQ +FYG G P +PP
Sbjct: 492 QAAAAAGMPQQYMQAPVFYGPGSQPGFMPP 521
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
A ++ +LY+ +LD V+D +L LF++ G + S +V RD T
Sbjct: 340 ASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 358 bits (919), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 183/406 (45%), Positives = 266/406 (65%), Gaps = 4/406 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+ SLYVGDL SV + LYD F + + SVR+C+D S+ RSL YGY N+ + +A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++ N + LNGK IR+M+S R P R++G GN+F+KNL +S+ N L D F FGNI+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVAT G+SRGYGFVQF+ E++A +AI LN ++ DK+++VG F++K +R +K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEK-- 199
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL +ED L++ F EFG I S A+ +D + + + FVNFD+P+DA R+ E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG KF K YVG+AQKK ERE L+ +F++ +E + N+YVKN++ ++++++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+ GTITS K+M D G S+G GFV FST EEA A+ +G+M KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 398 QRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPP 443
Q+KE+R+ +LQ QF + V PG L+Y P
Sbjct: 380 QKKEDRKMQLQVQFGNRVE--ARKSSSSASVNPGTYAPLYYTNTHP 423
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L SV ++ L D+F + G +VS +V L +S GYG+V +
Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQED 163
Query: 93 EATRALDELNFTPLNGKPIRI--MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A A+ LN T + K I + D + N+++KNLD + L + F+
Sbjct: 164 AAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE 223
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I+S +A D RGY FV FDN E A+ A + +NG K ++VG +K ERE
Sbjct: 224 FGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Query: 211 STADK------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
+ + +N+YVKN++ TE++L+K F + G ITST +M D GKS
Sbjct: 284 QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F P++A +V+ +G+ F K YV AQKK +R+M+L+ +F
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 26/208 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FDI-----------------IKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQ 413
++ ++V + +++R A L+++ S+
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASE 188
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 241/360 (66%), Gaps = 5/360 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q +
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,187,928
Number of Sequences: 539616
Number of extensions: 7504753
Number of successful extensions: 30783
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 385
Number of HSP's that attempted gapping in prelim test: 23680
Number of HSP's gapped (non-prelim): 4043
length of query: 467
length of database: 191,569,459
effective HSP length: 121
effective length of query: 346
effective length of database: 126,275,923
effective search space: 43691469358
effective search space used: 43691469358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)