Query 012257
Match_columns 467
No_of_seqs 270 out of 3123
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 00:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 6.1E-66 1.3E-70 514.5 45.3 370 40-410 1-374 (562)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.5E-51 1.2E-55 395.8 38.2 349 38-400 1-480 (481)
3 KOG0123 Polyadenylate-binding 100.0 4.4E-50 9.6E-55 368.0 32.4 359 40-413 2-362 (369)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-46 2.9E-51 355.7 31.2 338 38-401 2-350 (352)
5 KOG0117 Heterogeneous nuclear 100.0 2.8E-43 6E-48 310.3 28.8 286 89-411 42-342 (506)
6 KOG0145 RNA-binding protein EL 100.0 3.1E-42 6.7E-47 282.3 24.7 316 33-400 35-358 (360)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 4.3E-41 9.4E-46 322.3 27.6 296 38-350 57-370 (578)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 3.7E-40 8E-45 315.9 28.0 281 90-402 18-309 (578)
9 TIGR01628 PABP-1234 polyadenyl 100.0 6.5E-40 1.4E-44 327.4 30.4 258 129-403 2-264 (562)
10 KOG0144 RNA-binding protein CU 100.0 5.9E-40 1.3E-44 287.9 20.8 363 37-400 32-504 (510)
11 KOG0117 Heterogeneous nuclear 100.0 2.7E-39 5.9E-44 285.1 24.9 249 37-301 81-335 (506)
12 KOG0148 Apoptosis-promoting RN 100.0 1.1E-39 2.3E-44 269.3 19.7 235 125-401 4-239 (321)
13 KOG0127 Nucleolar protein fibr 100.0 7.7E-39 1.7E-43 288.7 24.3 343 40-382 6-516 (678)
14 TIGR01645 half-pint poly-U bin 100.0 4.5E-38 9.8E-43 301.7 28.7 170 38-207 106-285 (612)
15 TIGR01622 SF-CC1 splicing fact 100.0 3.3E-37 7.1E-42 301.5 31.8 342 35-401 85-449 (457)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.2E-36 7E-41 292.6 27.9 262 127-400 2-351 (481)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.7E-34 3.7E-39 286.5 31.0 258 32-296 168-501 (509)
18 KOG0127 Nucleolar protein fibr 100.0 1.8E-34 3.9E-39 260.7 23.3 277 128-404 6-382 (678)
19 KOG0148 Apoptosis-promoting RN 100.0 2.4E-34 5.2E-39 237.6 19.2 222 36-297 3-238 (321)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.7E-34 1.7E-38 281.7 26.0 271 125-401 173-503 (509)
21 KOG0110 RNA-binding protein (R 100.0 1.6E-34 3.5E-39 269.7 18.9 328 38-402 226-695 (725)
22 TIGR01659 sex-lethal sex-letha 100.0 7.5E-32 1.6E-36 246.8 23.4 170 34-205 102-274 (346)
23 KOG0123 Polyadenylate-binding 100.0 1.3E-30 2.8E-35 239.7 23.7 249 129-405 3-251 (369)
24 TIGR01659 sex-lethal sex-letha 100.0 2.7E-30 5.9E-35 236.6 21.0 170 215-402 104-277 (346)
25 KOG1190 Polypyrimidine tract-b 100.0 1.5E-28 3.2E-33 214.9 22.0 350 34-399 23-490 (492)
26 KOG0124 Polypyrimidine tract-b 100.0 1.1E-28 2.4E-33 212.4 18.7 169 39-207 113-291 (544)
27 KOG4212 RNA-binding protein hn 100.0 4.1E-28 8.9E-33 213.7 20.2 239 39-290 44-287 (608)
28 KOG0144 RNA-binding protein CU 100.0 1.9E-28 4E-33 215.8 15.1 175 217-408 33-214 (510)
29 TIGR01645 half-pint poly-U bin 100.0 7.3E-28 1.6E-32 231.6 17.7 176 217-399 106-283 (612)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.2E-27 9.2E-32 222.6 21.5 170 38-207 88-350 (352)
31 KOG0110 RNA-binding protein (R 100.0 3.8E-27 8.3E-32 220.6 19.0 259 35-299 381-695 (725)
32 KOG0147 Transcriptional coacti 99.9 6.7E-28 1.4E-32 219.6 11.9 329 35-400 175-528 (549)
33 TIGR01622 SF-CC1 splicing fact 99.9 3.7E-25 8.1E-30 216.5 19.2 176 217-399 88-265 (457)
34 KOG0131 Splicing factor 3b, su 99.9 9.8E-26 2.1E-30 175.9 11.7 170 39-209 9-180 (203)
35 KOG0145 RNA-binding protein EL 99.9 1.7E-25 3.6E-30 184.2 12.3 167 217-401 40-210 (360)
36 KOG1456 Heterogeneous nuclear 99.9 9.2E-23 2E-27 176.6 28.9 350 26-390 18-475 (494)
37 KOG4211 Splicing factor hnRNP- 99.9 4.2E-23 9.2E-28 185.9 22.8 336 38-381 9-491 (510)
38 KOG0109 RNA-binding protein LA 99.9 7.1E-24 1.5E-28 177.7 10.7 150 40-208 3-152 (346)
39 KOG0146 RNA-binding protein ET 99.9 1.5E-23 3.2E-28 173.5 10.8 292 108-402 2-367 (371)
40 KOG0131 Splicing factor 3b, su 99.9 1E-23 2.2E-28 164.7 8.5 168 217-401 8-178 (203)
41 KOG0109 RNA-binding protein LA 99.9 1.1E-23 2.3E-28 176.6 9.1 148 219-400 3-150 (346)
42 KOG4212 RNA-binding protein hn 99.9 6E-21 1.3E-25 168.8 14.9 247 127-397 44-291 (608)
43 KOG4205 RNA-binding protein mu 99.8 1E-20 2.3E-25 167.6 11.2 170 38-209 5-179 (311)
44 KOG0124 Polypyrimidine tract-b 99.8 2.2E-20 4.7E-25 161.6 11.8 172 219-397 114-287 (544)
45 KOG1365 RNA-binding protein Fu 99.8 2.8E-19 6E-24 155.7 17.4 288 37-404 58-366 (508)
46 KOG1190 Polypyrimidine tract-b 99.8 3.6E-18 7.9E-23 150.2 20.8 246 40-296 151-490 (492)
47 KOG4211 Splicing factor hnRNP- 99.8 5.7E-18 1.2E-22 153.1 22.2 264 126-395 9-353 (510)
48 KOG0105 Alternative splicing f 99.8 1.3E-18 2.9E-23 136.2 14.5 149 36-193 3-175 (241)
49 KOG0120 Splicing factor U2AF, 99.8 5.7E-18 1.2E-22 157.6 18.3 263 27-296 163-491 (500)
50 KOG0146 RNA-binding protein ET 99.8 1.8E-18 3.9E-23 143.5 12.0 169 38-207 18-366 (371)
51 PLN03134 glycine-rich RNA-bind 99.8 4.6E-18 1E-22 136.1 13.0 88 33-120 28-115 (144)
52 KOG0147 Transcriptional coacti 99.8 1E-18 2.2E-23 160.2 9.1 178 216-398 177-356 (549)
53 KOG0120 Splicing factor U2AF, 99.8 7.3E-18 1.6E-22 156.9 14.7 270 127-402 175-494 (500)
54 KOG4206 Spliceosomal protein s 99.8 2.2E-17 4.9E-22 135.2 15.6 156 38-200 8-216 (221)
55 KOG1457 RNA binding protein (c 99.8 5.4E-17 1.2E-21 131.3 16.5 153 38-193 33-273 (284)
56 KOG4206 Spliceosomal protein s 99.7 5E-17 1.1E-21 133.2 14.1 174 219-398 10-220 (221)
57 KOG4205 RNA-binding protein mu 99.7 1.3E-17 2.9E-22 147.9 9.5 244 126-384 5-256 (311)
58 KOG1456 Heterogeneous nuclear 99.7 3.9E-16 8.5E-21 135.9 18.1 260 127-399 31-362 (494)
59 PLN03134 glycine-rich RNA-bind 99.7 3.1E-17 6.8E-22 131.3 10.4 82 319-400 32-114 (144)
60 PF00076 RRM_1: RNA recognitio 99.7 5.7E-16 1.2E-20 109.4 8.8 70 324-393 1-70 (70)
61 KOG0122 Translation initiation 99.7 1.3E-15 2.7E-20 125.5 11.5 82 38-119 188-269 (270)
62 PF00076 RRM_1: RNA recognitio 99.6 1.1E-15 2.3E-20 108.0 9.2 70 42-112 1-70 (70)
63 KOG0105 Alternative splicing f 99.6 3.5E-15 7.5E-20 117.2 11.6 164 217-388 5-176 (241)
64 KOG4307 RNA binding protein RB 99.6 5.4E-15 1.2E-19 138.7 14.7 165 37-203 309-511 (944)
65 KOG0125 Ataxin 2-binding prote 99.6 9.9E-16 2.1E-20 131.4 8.0 82 318-400 93-174 (376)
66 KOG0121 Nuclear cap-binding pr 99.6 1.4E-15 3.1E-20 111.9 7.2 85 35-119 32-116 (153)
67 KOG0149 Predicted RNA-binding 99.6 1.5E-15 3.2E-20 124.7 7.3 79 39-118 12-90 (247)
68 KOG0122 Translation initiation 99.6 2E-15 4.4E-20 124.3 7.9 81 320-400 188-269 (270)
69 PF14259 RRM_6: RNA recognitio 99.6 5.9E-15 1.3E-19 103.9 9.0 70 42-112 1-70 (70)
70 PF14259 RRM_6: RNA recognitio 99.6 6.8E-15 1.5E-19 103.6 9.3 70 324-393 1-70 (70)
71 KOG1548 Transcription elongati 99.6 2.1E-13 4.5E-18 118.2 18.4 165 38-206 133-352 (382)
72 KOG0107 Alternative splicing f 99.6 5.9E-15 1.3E-19 115.2 7.9 78 39-121 10-87 (195)
73 KOG1457 RNA binding protein (c 99.6 3.3E-14 7.2E-19 115.3 11.8 170 216-388 32-274 (284)
74 KOG1548 Transcription elongati 99.6 2E-13 4.4E-18 118.3 15.8 177 218-397 134-349 (382)
75 KOG0106 Alternative splicing f 99.5 9.8E-15 2.1E-19 121.4 7.3 148 40-202 2-167 (216)
76 KOG0106 Alternative splicing f 99.5 5.4E-15 1.2E-19 122.9 5.5 165 220-398 3-169 (216)
77 KOG0149 Predicted RNA-binding 99.5 1.5E-14 3.3E-19 118.8 8.0 78 321-399 12-90 (247)
78 KOG4207 Predicted splicing fac 99.5 8.4E-15 1.8E-19 117.3 6.2 80 320-399 12-92 (256)
79 KOG0125 Ataxin 2-binding prote 99.5 3.7E-14 8E-19 121.8 10.4 78 39-118 96-173 (376)
80 PLN03120 nucleic acid binding 99.5 3.1E-14 6.8E-19 121.6 9.6 77 321-400 4-80 (260)
81 KOG0107 Alternative splicing f 99.5 1.6E-14 3.5E-19 112.8 6.8 77 320-400 9-85 (195)
82 KOG4207 Predicted splicing fac 99.5 1.9E-14 4.2E-19 115.2 7.1 84 34-117 8-91 (256)
83 PLN03120 nucleic acid binding 99.5 8.2E-14 1.8E-18 119.1 10.1 76 39-118 4-79 (260)
84 KOG0121 Nuclear cap-binding pr 99.5 6.7E-14 1.5E-18 103.2 6.9 84 320-403 35-119 (153)
85 KOG0113 U1 small nuclear ribon 99.5 1.8E-13 3.8E-18 116.2 9.8 86 30-115 92-177 (335)
86 KOG0130 RNA-binding protein RB 99.5 1.1E-13 2.3E-18 103.0 7.3 90 30-119 63-152 (170)
87 COG0724 RNA-binding proteins ( 99.5 6.6E-13 1.4E-17 122.7 14.6 124 39-162 115-260 (306)
88 KOG0114 Predicted RNA-binding 99.5 3.9E-13 8.4E-18 95.2 9.5 82 35-119 14-95 (124)
89 KOG0114 Predicted RNA-binding 99.5 2.9E-13 6.2E-18 95.8 8.7 82 319-402 16-97 (124)
90 PLN03213 repressor of silencin 99.5 2.8E-13 6E-18 122.6 10.6 81 319-402 8-90 (759)
91 KOG0126 Predicted RNA-binding 99.5 9.1E-15 2E-19 114.7 0.4 78 38-115 34-111 (219)
92 smart00362 RRM_2 RNA recogniti 99.5 3.9E-13 8.5E-18 95.3 8.9 72 323-395 1-72 (72)
93 PLN03121 nucleic acid binding 99.4 4.6E-13 1E-17 112.5 9.7 77 320-399 4-80 (243)
94 smart00362 RRM_2 RNA recogniti 99.4 6.6E-13 1.4E-17 94.1 9.1 71 41-113 1-71 (72)
95 KOG0130 RNA-binding protein RB 99.4 1.8E-13 4E-18 101.7 6.0 85 316-400 67-152 (170)
96 KOG0126 Predicted RNA-binding 99.4 1.8E-14 4E-19 113.0 0.2 77 321-397 35-112 (219)
97 KOG0111 Cyclophilin-type pepti 99.4 5.8E-14 1.3E-18 113.5 2.9 85 320-404 9-94 (298)
98 PLN03121 nucleic acid binding 99.4 1E-12 2.2E-17 110.4 9.8 76 38-117 4-79 (243)
99 PLN03213 repressor of silencin 99.4 8E-13 1.7E-17 119.7 9.5 78 37-118 8-87 (759)
100 KOG1365 RNA-binding protein Fu 99.4 9.1E-13 2E-17 115.5 9.4 163 38-202 160-358 (508)
101 smart00360 RRM RNA recognition 99.4 1.1E-12 2.5E-17 92.5 8.4 70 44-113 1-70 (71)
102 PF13893 RRM_5: RNA recognitio 99.4 8.7E-13 1.9E-17 87.9 7.0 56 338-397 1-56 (56)
103 KOG0113 U1 small nuclear ribon 99.4 1.2E-12 2.6E-17 111.2 8.9 81 318-398 98-179 (335)
104 smart00360 RRM RNA recognition 99.4 1.6E-12 3.5E-17 91.8 8.0 70 326-395 1-71 (71)
105 cd00590 RRM RRM (RNA recogniti 99.4 3.3E-12 7.2E-17 91.0 9.5 74 323-396 1-74 (74)
106 cd00590 RRM RRM (RNA recogniti 99.4 5.3E-12 1.2E-16 89.9 9.6 74 41-115 1-74 (74)
107 KOG0111 Cyclophilin-type pepti 99.3 1.4E-12 2.9E-17 105.7 5.7 83 38-120 9-91 (298)
108 KOG0128 RNA-binding protein SA 99.3 1.4E-14 3E-19 139.7 -6.8 321 40-399 480-814 (881)
109 KOG0108 mRNA cleavage and poly 99.3 6.2E-12 1.4E-16 117.2 10.3 85 322-406 19-104 (435)
110 KOG4660 Protein Mei2, essentia 99.3 9E-12 2E-16 115.3 10.4 156 33-200 69-244 (549)
111 KOG0108 mRNA cleavage and poly 99.3 7.2E-12 1.6E-16 116.8 9.6 80 40-119 19-98 (435)
112 smart00361 RRM_1 RNA recogniti 99.3 7.8E-12 1.7E-16 87.3 7.2 61 335-395 2-70 (70)
113 PF13893 RRM_5: RNA recognitio 99.3 1.2E-11 2.5E-16 82.4 7.4 56 56-116 1-56 (56)
114 smart00361 RRM_1 RNA recogniti 99.3 2.1E-11 4.6E-16 85.1 7.7 61 53-113 2-69 (70)
115 KOG0129 Predicted RNA-binding 99.2 3.3E-10 7.1E-15 104.3 15.4 151 37-187 257-432 (520)
116 COG0724 RNA-binding proteins ( 99.2 1.1E-10 2.4E-15 107.7 12.4 169 218-386 115-291 (306)
117 KOG0132 RNA polymerase II C-te 99.2 1.2E-10 2.6E-15 111.7 9.8 80 317-401 417-496 (894)
118 KOG0128 RNA-binding protein SA 99.1 4.8E-12 1E-16 122.5 -0.5 233 37-293 569-811 (881)
119 KOG0415 Predicted peptidyl pro 99.1 1.9E-10 4.1E-15 100.2 7.2 87 316-402 234-321 (479)
120 KOG4454 RNA binding protein (R 99.1 2.9E-11 6.3E-16 98.2 1.5 147 36-199 6-156 (267)
121 KOG4208 Nucleolar RNA-binding 99.0 7.4E-10 1.6E-14 89.7 8.0 84 33-116 43-127 (214)
122 KOG4208 Nucleolar RNA-binding 99.0 4.5E-10 9.7E-15 91.0 6.7 81 320-400 48-130 (214)
123 KOG0132 RNA polymerase II C-te 99.0 4.8E-10 1E-14 107.6 7.7 76 38-119 420-495 (894)
124 KOG4307 RNA binding protein RB 99.0 4.7E-09 1E-13 99.6 14.1 73 220-292 869-942 (944)
125 KOG4454 RNA binding protein (R 99.0 7.4E-11 1.6E-15 95.9 1.9 138 217-386 8-149 (267)
126 KOG0415 Predicted peptidyl pro 99.0 5.1E-10 1.1E-14 97.5 6.9 88 30-117 230-317 (479)
127 KOG0153 Predicted RNA-binding 99.0 1.5E-09 3.2E-14 94.8 7.9 82 31-118 220-302 (377)
128 KOG0153 Predicted RNA-binding 99.0 1.6E-09 3.5E-14 94.6 7.1 78 317-399 224-302 (377)
129 KOG0226 RNA-binding proteins [ 98.9 2.8E-09 6.1E-14 89.0 7.8 163 40-203 97-267 (290)
130 KOG0112 Large RNA-binding prot 98.9 2.5E-09 5.4E-14 104.6 6.6 157 219-400 373-531 (975)
131 KOG0112 Large RNA-binding prot 98.9 1.4E-09 3.1E-14 106.2 4.5 156 35-200 368-525 (975)
132 KOG4661 Hsp27-ERE-TATA-binding 98.9 1.6E-08 3.4E-13 93.9 10.3 83 36-118 402-484 (940)
133 KOG0129 Predicted RNA-binding 98.8 4.3E-08 9.4E-13 90.6 12.6 151 127-278 259-432 (520)
134 KOG0116 RasGAP SH3 binding pro 98.8 2.1E-08 4.5E-13 93.3 9.5 79 38-117 287-365 (419)
135 KOG0533 RRM motif-containing p 98.8 1.7E-08 3.7E-13 86.6 7.1 80 322-401 84-163 (243)
136 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.6E-13 94.7 6.6 83 318-400 402-485 (940)
137 KOG0226 RNA-binding proteins [ 98.7 1.5E-08 3.3E-13 84.7 5.3 153 145-297 117-270 (290)
138 PF04059 RRM_2: RNA recognitio 98.7 1.1E-07 2.4E-12 69.3 9.1 81 322-402 2-89 (97)
139 KOG0533 RRM motif-containing p 98.7 5E-08 1.1E-12 83.7 8.1 78 39-117 83-160 (243)
140 KOG4210 Nuclear localization s 98.7 2.3E-08 5E-13 89.4 5.9 168 37-205 86-263 (285)
141 KOG0151 Predicted splicing reg 98.7 7.9E-08 1.7E-12 91.8 9.3 82 36-117 171-255 (877)
142 KOG0116 RasGAP SH3 binding pro 98.6 6.3E-08 1.4E-12 90.2 7.2 81 321-402 288-369 (419)
143 KOG4660 Protein Mei2, essentia 98.6 2.1E-08 4.5E-13 93.4 4.0 72 318-393 72-143 (549)
144 PF04059 RRM_2: RNA recognitio 98.6 2.9E-07 6.3E-12 67.2 8.9 78 39-116 1-84 (97)
145 KOG4209 Splicing factor RNPS1, 98.6 6.6E-08 1.4E-12 83.4 5.8 83 34-117 96-178 (231)
146 KOG4210 Nuclear localization s 98.6 4.7E-08 1E-12 87.4 5.0 175 218-401 88-265 (285)
147 PF11608 Limkain-b1: Limkain b 98.6 2.4E-07 5.2E-12 63.8 7.0 73 40-122 3-80 (90)
148 KOG0151 Predicted splicing reg 98.6 2.3E-07 5.1E-12 88.7 8.5 83 318-400 171-257 (877)
149 KOG4209 Splicing factor RNPS1, 98.4 3.4E-07 7.5E-12 79.0 5.9 82 318-400 98-180 (231)
150 KOG4676 Splicing factor, argin 98.4 2.1E-08 4.6E-13 88.9 -1.5 212 128-398 8-224 (479)
151 KOG4849 mRNA cleavage factor I 98.4 1.3E-06 2.8E-11 76.5 9.2 79 322-400 81-163 (498)
152 PF11608 Limkain-b1: Limkain b 98.4 1.2E-06 2.5E-11 60.4 6.1 69 323-400 4-77 (90)
153 KOG2193 IGF-II mRNA-binding pr 98.3 8.8E-08 1.9E-12 85.9 0.0 154 40-205 2-156 (584)
154 KOG2193 IGF-II mRNA-binding pr 98.3 4.1E-07 9E-12 81.7 3.9 156 219-401 2-158 (584)
155 PF08777 RRM_3: RNA binding mo 98.1 1.1E-05 2.3E-10 60.7 7.0 72 322-398 2-78 (105)
156 COG5175 MOT2 Transcriptional r 98.0 1.5E-05 3.2E-10 69.7 6.3 78 323-400 116-203 (480)
157 KOG1995 Conserved Zn-finger pr 98.0 7.9E-06 1.7E-10 72.6 4.7 84 318-401 63-155 (351)
158 PF08777 RRM_3: RNA binding mo 97.9 3E-05 6.5E-10 58.2 6.0 58 40-103 2-59 (105)
159 KOG4849 mRNA cleavage factor I 97.9 1.7E-05 3.7E-10 69.7 5.2 86 29-114 68-157 (498)
160 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.4E-05 7.4E-10 49.8 4.9 53 39-98 1-53 (53)
161 KOG4676 Splicing factor, argin 97.8 6.1E-06 1.3E-10 73.7 0.8 201 41-285 9-214 (479)
162 KOG0115 RNA-binding protein p5 97.8 6.6E-05 1.4E-09 63.6 6.6 92 271-387 6-97 (275)
163 KOG1995 Conserved Zn-finger pr 97.8 3.6E-05 7.9E-10 68.5 5.3 84 36-119 63-154 (351)
164 COG5175 MOT2 Transcriptional r 97.8 8E-05 1.7E-09 65.3 6.9 116 32-147 107-240 (480)
165 KOG3152 TBP-binding protein, a 97.7 2E-05 4.4E-10 66.5 2.6 69 322-390 75-156 (278)
166 KOG0115 RNA-binding protein p5 97.7 0.0001 2.3E-09 62.4 6.7 89 92-189 5-93 (275)
167 KOG2314 Translation initiation 97.7 0.00016 3.4E-09 68.1 7.8 80 320-399 57-143 (698)
168 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00013 2.8E-09 47.1 4.9 52 322-379 2-53 (53)
169 KOG3152 TBP-binding protein, a 97.6 3.8E-05 8.1E-10 64.9 2.6 74 38-111 73-158 (278)
170 KOG1855 Predicted RNA-binding 97.5 7.3E-05 1.6E-09 67.9 3.8 69 319-387 229-311 (484)
171 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.0004 8.7E-09 51.2 6.8 79 320-400 5-92 (100)
172 KOG2416 Acinus (induces apopto 97.5 0.00029 6.3E-09 66.8 6.9 84 317-405 440-527 (718)
173 KOG2202 U2 snRNP splicing fact 97.4 5.6E-05 1.2E-09 64.2 1.5 63 336-398 83-146 (260)
174 PF08952 DUF1866: Domain of un 97.4 0.00053 1.1E-08 53.7 5.9 57 336-400 51-107 (146)
175 KOG1855 Predicted RNA-binding 97.3 0.00023 5E-09 64.8 4.2 77 37-113 229-318 (484)
176 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0016 3.4E-08 48.1 6.9 77 38-116 5-89 (100)
177 KOG1996 mRNA splicing factor [ 97.2 0.0011 2.4E-08 57.3 6.3 67 335-401 300-368 (378)
178 PF10309 DUF2414: Protein of u 97.0 0.0041 8.8E-08 41.1 6.7 54 322-382 6-62 (62)
179 PF08952 DUF1866: Domain of un 97.0 0.004 8.6E-08 48.9 7.3 71 38-117 26-105 (146)
180 KOG2314 Translation initiation 97.0 0.003 6.4E-08 59.9 7.7 76 125-200 56-138 (698)
181 PF08675 RNA_bind: RNA binding 96.9 0.0051 1.1E-07 42.8 6.7 54 323-383 10-63 (87)
182 PF15023 DUF4523: Protein of u 96.7 0.0089 1.9E-07 46.1 7.4 79 31-117 78-160 (166)
183 KOG1996 mRNA splicing factor [ 96.7 0.0052 1.1E-07 53.3 6.5 65 53-117 300-365 (378)
184 PF15023 DUF4523: Protein of u 96.6 0.0092 2E-07 46.1 6.3 75 317-398 82-160 (166)
185 KOG2202 U2 snRNP splicing fact 96.5 0.0014 3E-08 56.0 1.8 62 142-203 83-145 (260)
186 PF10309 DUF2414: Protein of u 96.5 0.018 3.8E-07 38.1 6.5 54 39-101 5-62 (62)
187 KOG2416 Acinus (induces apopto 96.3 0.0032 7E-08 60.0 3.5 71 30-106 435-506 (718)
188 PF07576 BRAP2: BRCA1-associat 96.3 0.055 1.2E-06 40.9 9.3 74 33-108 7-81 (110)
189 KOG2135 Proteins containing th 96.2 0.0041 8.9E-08 57.7 3.2 87 27-120 360-447 (526)
190 KOG2068 MOT2 transcription fac 95.9 0.004 8.7E-08 55.5 1.6 77 322-398 78-161 (327)
191 PF07576 BRAP2: BRCA1-associat 95.9 0.089 1.9E-06 39.8 8.5 66 322-388 13-80 (110)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.014 3E-07 48.6 4.4 69 38-106 6-80 (176)
193 PF08675 RNA_bind: RNA binding 95.7 0.075 1.6E-06 37.2 7.0 55 40-103 10-64 (87)
194 PF04847 Calcipressin: Calcipr 95.5 0.024 5.2E-07 47.3 4.7 62 334-400 8-71 (184)
195 KOG4285 Mitotic phosphoprotein 95.1 0.083 1.8E-06 46.4 6.8 69 40-116 198-267 (350)
196 KOG2068 MOT2 transcription fac 95.0 0.013 2.9E-07 52.3 2.0 78 38-116 76-160 (327)
197 PF10567 Nab6_mRNP_bdg: RNA-re 94.9 0.8 1.7E-05 40.5 12.3 182 217-398 14-230 (309)
198 KOG2591 c-Mpl binding protein, 94.8 0.079 1.7E-06 50.6 6.4 69 39-114 175-247 (684)
199 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.079 1.7E-06 44.2 5.6 81 320-400 6-98 (176)
200 PF11767 SET_assoc: Histone ly 94.7 0.14 3E-06 34.5 5.7 55 50-113 11-65 (66)
201 KOG4574 RNA-binding protein (c 94.6 0.018 3.8E-07 57.6 1.9 74 324-402 301-376 (1007)
202 KOG2253 U1 snRNP complex, subu 94.6 0.05 1.1E-06 53.1 4.7 79 28-115 29-107 (668)
203 PF10567 Nab6_mRNP_bdg: RNA-re 94.6 1.1 2.4E-05 39.7 12.3 156 34-190 10-213 (309)
204 KOG2591 c-Mpl binding protein, 94.4 0.036 7.8E-07 52.7 3.2 67 128-200 176-246 (684)
205 PF04847 Calcipressin: Calcipr 94.1 0.16 3.4E-06 42.5 6.2 60 52-117 8-69 (184)
206 KOG1924 RhoA GTPase effector D 93.7 0.1 2.2E-06 52.1 4.9 19 174-192 205-223 (1102)
207 KOG4285 Mitotic phosphoprotein 93.7 0.22 4.7E-06 43.9 6.3 68 323-397 199-267 (350)
208 PF07292 NID: Nmi/IFP 35 domai 93.6 0.35 7.7E-06 34.7 6.3 65 84-148 1-73 (88)
209 KOG0804 Cytoplasmic Zn-finger 93.6 0.2 4.3E-06 46.7 6.3 67 321-388 74-141 (493)
210 KOG1924 RhoA GTPase effector D 93.5 0.083 1.8E-06 52.6 4.1 10 53-62 85-94 (1102)
211 KOG0804 Cytoplasmic Zn-finger 93.4 0.33 7.2E-06 45.3 7.4 68 39-108 74-142 (493)
212 PF03880 DbpA: DbpA RNA bindin 93.3 0.27 5.9E-06 34.3 5.4 60 330-397 10-74 (74)
213 KOG2135 Proteins containing th 92.5 0.052 1.1E-06 50.7 1.1 73 322-400 373-446 (526)
214 PF11767 SET_assoc: Histone ly 92.1 0.94 2E-05 30.6 6.4 55 332-394 11-65 (66)
215 KOG4574 RNA-binding protein (c 91.9 0.11 2.3E-06 52.4 2.4 70 45-120 304-375 (1007)
216 KOG2318 Uncharacterized conser 90.4 1.3 2.9E-05 42.9 7.9 83 33-115 168-304 (650)
217 PF03880 DbpA: DbpA RNA bindin 90.2 1.6 3.6E-05 30.3 6.5 57 50-115 12-73 (74)
218 KOG2253 U1 snRNP complex, subu 87.7 0.34 7.3E-06 47.6 2.1 71 318-396 37-107 (668)
219 PF14111 DUF4283: Domain of un 85.9 1.1 2.4E-05 36.4 4.0 115 41-161 17-139 (153)
220 PF07292 NID: Nmi/IFP 35 domai 85.3 1.4 3E-05 31.7 3.7 70 171-240 1-74 (88)
221 KOG2318 Uncharacterized conser 84.8 3.2 7E-05 40.4 6.9 80 318-397 171-305 (650)
222 PF07530 PRE_C2HC: Associated 77.1 5.4 0.00012 27.2 4.1 62 54-118 2-64 (68)
223 KOG4410 5-formyltetrahydrofola 76.5 13 0.00029 32.7 7.2 50 38-92 329-378 (396)
224 TIGR03636 L23_arch archaeal ri 76.4 14 0.0003 25.9 6.1 57 42-101 16-74 (77)
225 KOG4019 Calcineurin-mediated s 76.4 1.6 3.5E-05 35.6 1.6 74 323-401 12-91 (193)
226 PRK14548 50S ribosomal protein 75.9 14 0.0003 26.5 6.0 56 43-101 24-81 (84)
227 PF03468 XS: XS domain; Inter 74.1 4.6 0.0001 31.0 3.6 56 41-99 10-75 (116)
228 PF14111 DUF4283: Domain of un 66.4 6.3 0.00014 31.9 3.1 110 138-252 28-139 (153)
229 KOG4483 Uncharacterized conser 66.2 9.7 0.00021 35.4 4.3 54 39-99 391-445 (528)
230 PF15513 DUF4651: Domain of un 64.2 14 0.00029 24.5 3.6 20 336-355 9-28 (62)
231 PF03468 XS: XS domain; Inter 62.4 9.5 0.00021 29.3 3.1 53 323-377 10-71 (116)
232 PRK14548 50S ribosomal protein 62.3 33 0.00072 24.5 5.6 57 324-382 23-81 (84)
233 TIGR03636 L23_arch archaeal ri 61.0 38 0.00083 23.7 5.6 58 323-382 15-74 (77)
234 smart00596 PRE_C2HC PRE_C2HC d 60.5 21 0.00046 24.2 4.1 61 54-117 2-63 (69)
235 KOG2295 C2H2 Zn-finger protein 59.2 1.7 3.8E-05 41.9 -1.6 75 37-111 229-303 (648)
236 KOG3424 40S ribosomal protein 51.9 48 0.001 25.1 5.1 46 50-96 34-84 (132)
237 KOG4019 Calcineurin-mediated s 50.9 12 0.00027 30.7 2.1 73 39-117 10-88 (193)
238 KOG2891 Surface glycoprotein [ 50.6 19 0.00042 31.6 3.4 68 320-387 148-247 (445)
239 KOG4483 Uncharacterized conser 50.0 38 0.00083 31.7 5.3 54 322-381 392-446 (528)
240 KOG2236 Uncharacterized conser 49.8 24 0.00052 33.8 4.1 9 263-271 263-271 (483)
241 PF15513 DUF4651: Domain of un 47.9 44 0.00096 22.2 3.9 23 232-254 8-30 (62)
242 KOG4213 RNA-binding protein La 44.9 28 0.0006 28.7 3.2 58 40-101 112-170 (205)
243 KOG4410 5-formyltetrahydrofola 44.4 27 0.00058 31.0 3.3 47 322-373 331-378 (396)
244 PRK11901 hypothetical protein; 43.0 1.1E+02 0.0024 28.2 7.0 59 40-103 246-306 (327)
245 COG5638 Uncharacterized conser 37.7 1E+02 0.0022 29.1 6.0 42 32-73 139-185 (622)
246 PF02714 DUF221: Domain of unk 37.6 60 0.0013 30.2 5.0 56 84-149 1-56 (325)
247 KOG3861 Sensory cilia assembly 36.2 22 0.00048 32.0 1.6 54 18-71 342-395 (438)
248 COG5193 LHP1 La protein, small 35.6 17 0.00037 34.0 0.9 64 36-99 171-244 (438)
249 KOG1923 Rac1 GTPase effector F 35.4 1.5E+02 0.0032 30.8 7.2 8 335-342 230-237 (830)
250 cd04904 ACT_AAAH ACT domain of 34.4 1.1E+02 0.0025 21.0 4.8 51 334-384 13-65 (74)
251 KOG2295 C2H2 Zn-finger protein 33.8 7.2 0.00016 37.9 -1.8 70 320-389 230-300 (648)
252 PTZ00191 60S ribosomal protein 32.8 1.5E+02 0.0032 23.8 5.5 56 324-381 84-141 (145)
253 PF14893 PNMA: PNMA 32.8 44 0.00094 31.1 3.0 25 38-62 17-41 (331)
254 KOG4008 rRNA processing protei 32.1 37 0.00081 29.3 2.3 35 34-68 35-69 (261)
255 KOG1295 Nonsense-mediated deca 31.3 59 0.0013 30.4 3.6 67 39-105 7-76 (376)
256 KOG4213 RNA-binding protein La 31.1 99 0.0021 25.6 4.4 58 336-396 124-183 (205)
257 KOG4008 rRNA processing protei 31.1 31 0.00066 29.8 1.6 35 319-353 38-72 (261)
258 COG5507 Uncharacterized conser 31.0 71 0.0015 23.3 3.1 20 82-101 67-86 (117)
259 KOG4365 Uncharacterized conser 30.6 11 0.00024 35.5 -1.1 81 323-404 5-86 (572)
260 KOG1295 Nonsense-mediated deca 30.1 79 0.0017 29.7 4.2 67 322-388 8-78 (376)
261 PTZ00191 60S ribosomal protein 29.6 2.1E+02 0.0045 23.0 5.9 56 43-101 85-142 (145)
262 COG5638 Uncharacterized conser 29.0 1.4E+02 0.0031 28.1 5.5 79 318-396 143-294 (622)
263 cd04880 ACT_AAAH-PDT-like ACT 28.9 1.9E+02 0.0042 19.7 6.0 49 53-102 13-65 (75)
264 PF11411 DNA_ligase_IV: DNA li 28.4 47 0.001 19.3 1.5 16 49-64 19-34 (36)
265 PF11823 DUF3343: Protein of u 27.9 61 0.0013 22.3 2.5 24 364-387 3-26 (73)
266 COG2061 ACT-domain-containing 27.8 3.3E+02 0.0071 22.0 11.2 121 56-189 22-152 (170)
267 PRK10905 cell division protein 27.8 2.2E+02 0.0048 26.2 6.4 58 41-102 249-307 (328)
268 PF11823 DUF3343: Protein of u 27.7 72 0.0016 21.9 2.8 29 83-111 3-31 (73)
269 PRK11230 glycolate oxidase sub 27.1 2E+02 0.0044 28.7 6.9 48 336-383 204-255 (499)
270 KOG4365 Uncharacterized conser 27.1 14 0.00031 34.9 -1.1 78 39-117 3-80 (572)
271 PF04026 SpoVG: SpoVG; InterP 26.1 1.3E+02 0.0028 21.5 3.9 26 65-90 2-27 (84)
272 PRK11901 hypothetical protein; 25.5 1.8E+02 0.0039 26.8 5.5 63 320-387 244-309 (327)
273 PF00585 Thr_dehydrat_C: C-ter 25.5 2.5E+02 0.0053 20.4 5.4 50 54-103 22-73 (91)
274 cd04909 ACT_PDH-BS C-terminal 23.3 2.3E+02 0.005 18.7 5.8 48 53-102 15-63 (69)
275 cd04908 ACT_Bt0572_1 N-termina 23.2 2.3E+02 0.005 18.7 6.9 48 335-386 15-63 (66)
276 PF14893 PNMA: PNMA 22.8 90 0.0019 29.1 3.2 53 127-179 18-73 (331)
277 cd00187 TOP4c DNA Topoisomeras 22.6 4.2E+02 0.009 26.1 7.8 96 39-149 225-325 (445)
278 PF08734 GYD: GYD domain; Int 22.5 3.1E+02 0.0067 19.9 6.0 47 335-384 22-69 (91)
279 CHL00030 rpl23 ribosomal prote 22.5 2.1E+02 0.0047 20.9 4.5 33 42-74 21-55 (93)
280 PRK10629 EnvZ/OmpR regulon mod 22.3 3.9E+02 0.0084 20.9 7.6 59 39-105 35-97 (127)
281 PF13046 DUF3906: Protein of u 22.3 1.1E+02 0.0025 20.4 2.7 32 53-86 32-63 (64)
282 PRK10629 EnvZ/OmpR regulon mod 22.2 3.9E+02 0.0085 20.9 7.2 69 323-398 37-109 (127)
283 PRK13259 regulatory protein Sp 21.9 1.7E+02 0.0036 21.5 3.7 26 65-90 2-27 (94)
284 KOG2893 Zn finger protein [Gen 21.2 1.8E+02 0.0039 25.2 4.4 55 409-463 119-175 (341)
285 cd04889 ACT_PDH-BS-like C-term 21.0 2.3E+02 0.0049 17.8 5.6 42 54-98 13-55 (56)
286 PF02714 DUF221: Domain of unk 20.4 2E+02 0.0044 26.6 5.3 22 171-192 1-22 (325)
287 cd04931 ACT_PAH ACT domain of 20.4 3.4E+02 0.0073 19.7 5.2 50 334-383 27-79 (90)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.1e-66 Score=514.46 Aligned_cols=370 Identities=64% Similarity=1.026 Sum_probs=335.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
.+|||+|||++++|++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|++.+++..+.|+.|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 012257 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (467)
Q Consensus 120 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~ 199 (467)
+..+....++|||+|||.++++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.++|..+.++.+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 88777888899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHh
Q 012257 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279 (467)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 279 (467)
+.......... .......++|||+||+.++++++|+++|+.||.|.++.+..+.++.++|||||+|.+.++|.+|+..+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 97766554443 22344567899999999999999999999999999999999988999999999999999999999999
Q ss_pred CCCccC----CceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEee
Q 012257 280 NGKKFD----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR 355 (467)
Q Consensus 280 ~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~ 355 (467)
++..+. +..+.+.++..+..+......................+|||+||+..+++++|+++|++||.|++|+++.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999998877765555444444333334455677899999999999999999999999999999999
Q ss_pred CCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhHHHHHHHHhh
Q 012257 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410 (467)
Q Consensus 356 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~ 410 (467)
+.+|.++|||||+|.+.++|.+|+..|||..++|++|.|.++..+..+....+.+
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~ 374 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQ 374 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887766554443
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.5e-51 Score=395.83 Aligned_cols=349 Identities=20% Similarity=0.254 Sum_probs=279.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh--CCcccCCceeeeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL--NFTPLNGKPIRIMY 115 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~~~v~~ 115 (467)
+|++|||+|||++++|++|+++|+.||.|.+|.+++++ +||||+|.+.++|++|++.+ ++..+.|+.|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 58999999999999999999999999999999998643 69999999999999999864 67889999999999
Q ss_pred cccCccccc----------CCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 012257 116 SYRDPTIRK----------SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185 (467)
Q Consensus 116 ~~~~~~~~~----------~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~ 185 (467)
+........ ....+|+|.||+..+++++|+++|+.||.|.+|.+.++. ..++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 864431111 122368999999999999999999999999999988753 2468999999999999999
Q ss_pred HHhcCCccCCe--eeEecccccccc--------------------cc-----------cc--------------------
Q 012257 186 DKLNGMLLNDK--QVFVGPFLRKQE--------------------RE-----------ST-------------------- 212 (467)
Q Consensus 186 ~~l~~~~~~g~--~~~v~~~~~~~~--------------------~~-----------~~-------------------- 212 (467)
+.|||..+.+. .|.+.++..... +. ..
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 99999998653 555544321100 00 00
Q ss_pred --------------------------------------cccccccceeecCCCc-cCCHHHHHHhhcccCCeeEEEEEEC
Q 012257 213 --------------------------------------ADKTRFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRD 253 (467)
Q Consensus 213 --------------------------------------~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~ 253 (467)
.......+|+|+||+. .+++++|+++|+.||.|.+++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0011345899999997 6999999999999999999999876
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHh---h-h------hhhhhhhc---------
Q 012257 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL---K-G------KFEQSLKE--------- 314 (467)
Q Consensus 254 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~---~-~------~~~~~~~~--------- 314 (467)
.+|+|||+|.+.++|..|+..|++..+.|+.|.+.++.......... . . ........
T Consensus 312 ----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 ----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 35899999999999999999999999999999998875532110000 0 0 00000000
Q ss_pred cccCCCCceEEEecCCCCCCHHHHHHhhccCCc--eeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccc-
Q 012257 315 TADKFEGLNLYVKNLDDSISDDKLKELFSEFGT--ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP- 391 (467)
Q Consensus 315 ~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~--v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 391 (467)
.....++.+|||+|||..+++++|+++|+.||. |..+++....++ .+++|||+|.+.++|.+|+..|||+.|.++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 001245678999999999999999999999998 888988765544 5789999999999999999999999999885
Q ss_pred -----eEEehhhhh
Q 012257 392 -----LYVALAQRK 400 (467)
Q Consensus 392 -----l~v~~~~~~ 400 (467)
|+|+|+++.
T Consensus 467 ~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 467 SAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEeccCC
Confidence 999999753
No 3
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-50 Score=368.02 Aligned_cols=359 Identities=64% Similarity=1.014 Sum_probs=329.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
..|||+ ++++|..|+++|+.+|+|++|++++|. | +.|||||.|.+++||.+|+.+++...+.|+.++|.|+..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 6 9999999999999999999999999999999999999988
Q ss_pred cccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 012257 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (467)
Q Consensus 120 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~ 199 (467)
++. |||.||+++++..+|.++|+.||.|++|++..+..| ++|| ||+|.+++.|.+|++.+||..+.++.+.
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 776 999999999999999999999999999999999888 8999 9999999999999999999999999999
Q ss_pred eccccccccccccc--ccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 012257 200 VGPFLRKQERESTA--DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277 (467)
Q Consensus 200 v~~~~~~~~~~~~~--~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 277 (467)
+.....+.++.... .....+++++.+++.+.+++.|.++|..+|.|.++.++.+..+++++|+||.|.+.++|..|+.
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 98888776654333 3355678999999999999999999999999999999999988899999999999999999999
Q ss_pred HhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC
Q 012257 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357 (467)
Q Consensus 278 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~ 357 (467)
.+++..+.+..+.+..++.+.+.......................+|||.|++..++++.|++.|+.||+|.++++..+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999998888777777666666666666778899999999999999999999999999999999999
Q ss_pred CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhHHHHHHHHhhccC
Q 012257 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413 (467)
Q Consensus 358 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 413 (467)
.|.++||+||.|.+.++|.+|+..+||..+.++.|.|.++...+.+..+.+.+...
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~ 362 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGA 362 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhcce
Confidence 99999999999999999999999999999999999999999766665555544443
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.3e-46 Score=355.67 Aligned_cols=338 Identities=25% Similarity=0.414 Sum_probs=233.6
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
+.++|||+|||.+++|++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCC-
Q 012257 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND- 195 (467)
Q Consensus 118 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g- 195 (467)
.... .....+|||+|||..+++++|+.+|+.||.|..+.+..+ .++.++|+|||+|.+.++|..|++.|+|..+.|
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4432 234568999999999999999999999999999999887 577899999999999999999999999998877
Q ss_pred -eeeEecccccccccccccccccccce-----eecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCC-
Q 012257 196 -KQVFVGPFLRKQERESTADKTRFNNV-----YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD- 268 (467)
Q Consensus 196 -~~~~v~~~~~~~~~~~~~~~~~~~~l-----~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~- 268 (467)
..+.+.+................... ....++..+.. ...+.+... . ..+..
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------------~--~~~~~~ 218 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA-------AGIGPMHHA------------A--ARFRPS 218 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc-------cCCCCccCc------------c--cccccC
Confidence 45566554333211100000000000 00000000000 000000000 0 00000
Q ss_pred HHHHHHHH-HHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCc
Q 012257 269 PDDAARSV-EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGT 347 (467)
Q Consensus 269 ~~~a~~a~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~ 347 (467)
........ ..................... . . ..................+.+|||+|||+.+++++|+++|++||.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~ 295 (352)
T TIGR01661 219 AGDFTAVLAHQQQQHAVAQQHAAQRASPPA-T-D-GQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGA 295 (352)
T ss_pred cchhhhhhhhhhhhcccccccccccCCCcc-c-c-ccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCC
Confidence 00000000 000000000000000000000 0 0 000000000001111234557999999999999999999999999
Q ss_pred eeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhH
Q 012257 348 ITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 348 v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|+..+.
T Consensus 296 v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 296 VQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred eEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999998 89999999999999999999999999999999999999987653
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.8e-43 Score=310.31 Aligned_cols=286 Identities=26% Similarity=0.378 Sum_probs=238.0
Q ss_pred cChHHHHHHHHHhCCcccCCceeeeeecccC--------cccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEe
Q 012257 89 NAAHEATRALDELNFTPLNGKPIRIMYSYRD--------PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160 (467)
Q Consensus 89 ~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~--------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~ 160 (467)
.+.++|.+||.+-. |-.+.+.....+ +.......+.|||+.||.++.+++|..+|++.|.|.+++++
T Consensus 42 ~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM 116 (506)
T KOG0117|consen 42 QSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM 116 (506)
T ss_pred ccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEe
Confidence 34677788876532 334444332211 11122446789999999999999999999999999999999
Q ss_pred eC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCcc-CCeeeEecccccccccccccccccccceeecCCCccCCHHHHHHh
Q 012257 161 TD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLL-NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238 (467)
Q Consensus 161 ~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~-~g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~ 238 (467)
++ .+|.++|||||.|.+.++|++|++.||+.+| .|+.|.|+.+..+ ++|||+|+|+..+.++|++.
T Consensus 117 mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan------------~RLFiG~IPK~k~keeIlee 184 (506)
T KOG0117|consen 117 MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN------------CRLFIGNIPKTKKKEEILEE 184 (506)
T ss_pred ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec------------ceeEeccCCccccHHHHHHH
Confidence 99 8999999999999999999999999999987 5888888776665 77999999999999999999
Q ss_pred hcccCC-eeEEEEEECC--CCCceeEEEEEeCCHHHHHHHHHHhCC--CccCCceEEEcccccchHHHHHhhhhhhhhhh
Q 012257 239 FGEFGI-ITSTAVMRDA--DGKSKCFGFVNFDDPDDAARSVEALNG--KKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313 (467)
Q Consensus 239 f~~~g~-v~~~~~~~~~--~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 313 (467)
+++.+. |.++.+..+. ..++||||||+|.++..|..|...|-. ..+.|..+.|.|+.+..+.......
T Consensus 185 ~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms------- 257 (506)
T KOG0117|consen 185 MKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMS------- 257 (506)
T ss_pred HHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhh-------
Confidence 999875 7777777764 467999999999999999999988755 4467899999999876554332111
Q ss_pred ccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 314 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
.-..|||+||+..+|++.|+++|++||.|++|+.++| ||||+|.++++|.+|++.+||+.|+|..|.
T Consensus 258 ------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iE 324 (506)
T KOG0117|consen 258 ------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIE 324 (506)
T ss_pred ------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEE
Confidence 2236999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred EehhhhhHHHHHHHHhhc
Q 012257 394 VALAQRKEERRARLQAQF 411 (467)
Q Consensus 394 v~~~~~~~~~~~~~~~~~ 411 (467)
|.+|++..+++..+...+
T Consensus 325 vtLAKP~~k~k~~r~~~~ 342 (506)
T KOG0117|consen 325 VTLAKPVDKKKKERKAMR 342 (506)
T ss_pred EEecCChhhhccchhhhh
Confidence 999999888776654333
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-42 Score=282.29 Aligned_cols=316 Identities=28% Similarity=0.454 Sum_probs=236.7
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.......+.|.|..||.+++++||+.+|...|+|+++++++|+.+|++.||+||.|.+++||++|+..|++..+..++|+
T Consensus 35 ~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIK 114 (360)
T KOG0145|consen 35 NDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIK 114 (360)
T ss_pred CCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEE
Confidence 33445578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCC
Q 012257 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGM 191 (467)
Q Consensus 113 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~ 191 (467)
|.++.+... .-...+|||.+||+..|..||..+|+.||.|..-+|+.| .+|.++|.+||+|...++|++|++.|||.
T Consensus 115 VSyARPSs~--~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 115 VSYARPSSD--SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred EEeccCChh--hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 988865433 334568999999999999999999999999988888888 78999999999999999999999999998
Q ss_pred ccCCe--eeEecccccccccccccccccccceeecCCCccCCHHHHHHhhc----ccCCeeEEEEEECCCCCceeEEEEE
Q 012257 192 LLNDK--QVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG----EFGIITSTAVMRDADGKSKCFGFVN 265 (467)
Q Consensus 192 ~~~g~--~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~----~~g~v~~~~~~~~~~~~~~g~afv~ 265 (467)
.-.|. .|.|..+... ....+..-+..++. .|+.-......+ + .
T Consensus 193 ~P~g~tepItVKFannP--------------------sq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r--------~---r 241 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNP--------------------SQKTNQALLSQLYQSPARRYGGPMHHQAQR--------F---R 241 (360)
T ss_pred CCCCCCCCeEEEecCCc--------------------ccccchhhhHHhhcCccccCCCcccchhhh--------h---c
Confidence 65553 3444332221 11112222222321 111100000000 0 0
Q ss_pred eCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccC
Q 012257 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345 (467)
Q Consensus 266 f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~ 345 (467)
+...-....++.......+++..-.+.. .-......+++|||.||.++.+|.-|.++|.+|
T Consensus 242 ~~~~~~~~~~~~rfsP~~~d~m~~l~~~-------------------~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF 302 (360)
T KOG0145|consen 242 LDNLLNPHAAQARFSPMTIDGMSGLAGV-------------------NLPGGPGGGWCIFVYNLSPDADESILWQLFGPF 302 (360)
T ss_pred cccccchhhhhccCCCccccccceeeee-------------------ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc
Confidence 0000011111111111111111111000 001122346799999999999999999999999
Q ss_pred CceeEEEEeeCCC-CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 346 GTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 346 G~v~~v~i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
|.|..|++++|.+ .+.+||+||.+.+-++|.-||..|||..+++|.|.|+|...+
T Consensus 303 GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 303 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999984 889999999999999999999999999999999999997654
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.3e-41 Score=322.31 Aligned_cols=296 Identities=21% Similarity=0.329 Sum_probs=242.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccC-Cceeeeeec
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN-GKPIRIMYS 116 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~~~v~~~ 116 (467)
..++|||+|||++++|++|+++|++||.|.+++|++| .+++++|||||+|.+.++|++|++.|++..+. |+.+.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4699999999999999999999999999999999999 78999999999999999999999999998885 788877665
Q ss_pred ccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCC-eEEEEEeeC--CCCCceeEEEEEeCCHHHHHHHHHHhcC--C
Q 012257 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN-ILSCKVATD--SLGQSRGYGFVQFDNEESAKSAIDKLNG--M 191 (467)
Q Consensus 117 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~~~~~~~--~~g~~~~~afV~f~~~~~A~~a~~~l~~--~ 191 (467)
. ..++|||+|||.++++++|.+.|+.++. +.++.+... ..+++++||||+|.+.++|..|++.|+. .
T Consensus 136 ~--------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 136 V--------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred c--------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 3 3468999999999999999999999874 444444333 4467899999999999999999988864 3
Q ss_pred ccCCeeeEecccccccccccccccccccceeecCCCccCCHHHHHHhhccc--CCeeEEEEEECCCCCceeEEEEEeCCH
Q 012257 192 LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF--GIITSTAVMRDADGKSKCFGFVNFDDP 269 (467)
Q Consensus 192 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~g~afv~f~~~ 269 (467)
.+.|+.|.|.++....... .......++|||+||+..+++++|+++|+.| |.|+++.++ ++||||+|.+.
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d-~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~ 279 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVD-EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDR 279 (578)
T ss_pred EecCceEEEEeeccccccc-ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCH
Confidence 5789999998876543322 1222345789999999999999999999999 999999876 45999999999
Q ss_pred HHHHHHHHHhCCCccCCceEEEcccccchHHHHHhh----------hhhhhhhhccccCCCCceEEEecCCCCCCHHHHH
Q 012257 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK----------GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339 (467)
Q Consensus 270 ~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~ 339 (467)
++|.+|+..+++..+.|+.|.+.|+........... ...........-.+...+++++|+++..+++.+.
T Consensus 280 e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~ 359 (578)
T TIGR01648 280 EDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSL 359 (578)
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchh
Confidence 999999999999999999999999976543211000 0000111112234467789999999999999999
Q ss_pred HhhccCCceeE
Q 012257 340 ELFSEFGTITS 350 (467)
Q Consensus 340 ~~F~~~G~v~~ 350 (467)
++|..+|.|..
T Consensus 360 ~~f~~~g~~~~ 370 (578)
T TIGR01648 360 HFPRMPGPIRG 370 (578)
T ss_pred hccccCccccC
Confidence 99999998753
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.7e-40 Score=315.91 Aligned_cols=281 Identities=24% Similarity=0.337 Sum_probs=228.7
Q ss_pred ChHHHHHHHHHhCCcccCCceeeeeecccCc---ccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCC
Q 012257 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDP---TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ 166 (467)
Q Consensus 90 ~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~~---~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~ 166 (467)
-.++|.+|+.++++..+........+..+.+ .......++|||+|||.++++++|+++|++||.|.+++++++.+|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 3678899998888776655544444432221 1223345799999999999999999999999999999999998899
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCC-
Q 012257 167 SRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI- 244 (467)
Q Consensus 167 ~~~~afV~f~~~~~A~~a~~~l~~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~- 244 (467)
++|||||+|.+.++|++|++.|++..+. ++.+.+..+. ..++|||+|||.++++++|.+.|++++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~------------~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV------------DNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc------------cCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998875 6666664432 2368999999999999999999999864
Q ss_pred eeEEEEEEC--CCCCceeEEEEEeCCHHHHHHHHHHhCC--CccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCC
Q 012257 245 ITSTAVMRD--ADGKSKCFGFVNFDDPDDAARSVEALNG--KKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320 (467)
Q Consensus 245 v~~~~~~~~--~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (467)
+.++.+... ..++++|||||+|.+.++|..|+..++. ..+.++.+.+.|+........ .....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-------------~~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-------------DVMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------ccccc
Confidence 444444333 3457899999999999999999988864 357899999999876432110 11123
Q ss_pred CceEEEecCCCCCCHHHHHHhhccC--CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~--G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
.++|||+||+..+++++|+++|+.| |.|++|+++++ ||||+|++.++|.+|++.|||..|+|+.|+|+|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4589999999999999999999999 99999988754 99999999999999999999999999999999998
Q ss_pred hhHH
Q 012257 399 RKEE 402 (467)
Q Consensus 399 ~~~~ 402 (467)
+...
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7543
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.5e-40 Score=327.43 Aligned_cols=258 Identities=41% Similarity=0.652 Sum_probs=230.3
Q ss_pred cEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccccccc
Q 012257 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (467)
Q Consensus 129 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~ 207 (467)
+|||+|||.++|+++|+++|+.||.|.+|++.++ .+++++|||||+|.+.++|.+|++.+++..+.|+.|++.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999998 568999999999999999999999999999999999998875432
Q ss_pred ccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 012257 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287 (467)
Q Consensus 208 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 287 (467)
.. ......+|||+||+.++++++|+++|+.||.|.++.+..+.+++++|||||+|.+.++|..|+..+++..+.++
T Consensus 82 ~~----~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 82 SL----RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred cc----cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 22 22234679999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEE
Q 012257 288 EWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367 (467)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV 367 (467)
.+.+........+. .......++|||+||+..+++++|+++|+.||.|.++++..+.+|.++|||||
T Consensus 158 ~i~v~~~~~~~~~~-------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV 224 (562)
T TIGR01628 158 EVYVGRFIKKHERE-------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFV 224 (562)
T ss_pred eEEEeccccccccc-------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEE
Confidence 99987665443321 01122345799999999999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHhCCcEec----ccceEEehhhhhHHH
Q 012257 368 AFSTAEEASKALTEMNGKMVV----SKPLYVALAQRKEER 403 (467)
Q Consensus 368 ~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~~~~~~~~ 403 (467)
+|.+.++|.+|++.|||..+. |+.|.|.+++.+.++
T Consensus 225 ~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 225 NFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred EECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 999999999999999999999 999999998766554
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.9e-40 Score=287.89 Aligned_cols=363 Identities=24% Similarity=0.362 Sum_probs=240.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc-ccCC--ceeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT-PLNG--KPIRI 113 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g--~~~~v 113 (467)
.+.-++||+-||...+|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..|++. .+.| .+|+|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 56789999999999999999999999999999999999999999999999999999999999999764 4555 56777
Q ss_pred eecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCc-
Q 012257 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML- 192 (467)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~- 192 (467)
.++..... +-.+.++|||+-|++.++|.|++++|++||.|++|.|.++.++.++|||||.|.+.+.|..|++.|||..
T Consensus 112 k~Ad~E~e-r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 112 KYADGERE-RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cccchhhh-ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcccee
Confidence 77654322 2355789999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cCCe--eeEeccccccccccccccc--c-----------cc------------------------cceeecCCCcc--CC
Q 012257 193 LNDK--QVFVGPFLRKQERESTADK--T-----------RF------------------------NNVYVKNLSET--TT 231 (467)
Q Consensus 193 ~~g~--~~~v~~~~~~~~~~~~~~~--~-----------~~------------------------~~l~v~nlp~~--~~ 231 (467)
+.|. .|.|.++..+.++...... . .+ +-.-+++++.- ..
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 6664 5777776555444322110 0 00 00111122211 11
Q ss_pred HHHHHHh--hcccC-----CeeEEE--EEECCC---CC----ceeEEEEEe--CCHHHH--HHHHHHhCCCccC------
Q 012257 232 EDDLKKI--FGEFG-----IITSTA--VMRDAD---GK----SKCFGFVNF--DDPDDA--ARSVEALNGKKFD------ 285 (467)
Q Consensus 232 ~~~l~~~--f~~~g-----~v~~~~--~~~~~~---~~----~~g~afv~f--~~~~~a--~~a~~~l~~~~~~------ 285 (467)
...+... ..... ...+.. -.+..+ +. ...+++-.- .+.... .-++..+-+...+
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence 1111110 00000 000000 000000 00 000000000 000000 0011111111000
Q ss_pred --CceEEEcc----------cccchHH-HHHhh-------------------------hhhhhhhhccccCCCCceEEEe
Q 012257 286 --DKEWYVGK----------AQKKYER-EMELK-------------------------GKFEQSLKETADKFEGLNLYVK 327 (467)
Q Consensus 286 --~~~l~~~~----------~~~~~~~-~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~V~ 327 (467)
+....... ....... ..... .............+.+..|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 00000000 0000000 00000 0000111123445677889999
Q ss_pred cCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 328 NLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 328 nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
+||.+.-+.+|-..|..||.|.+.++..|+ ++.+++|+||.|++..+|.+||..|||..+++++|+|..++++
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 999999999999999999999999998887 8999999999999999999999999999999999999988765
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-39 Score=285.13 Aligned_cols=249 Identities=27% Similarity=0.456 Sum_probs=222.8
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc-CCceeeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL-NGKPIRIMY 115 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~-~g~~~~v~~ 115 (467)
...|.|||+.||.++.|+||.-+|++.|+|.+++++.|+.+|.++|||||+|.++++|++|++.||+..| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999999999887 789999987
Q ss_pred cccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCC-eEEEEEeeC--CCCCceeEEEEEeCCHHHHHHHHHHhc-C-
Q 012257 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN-ILSCKVATD--SLGQSRGYGFVQFDNEESAKSAIDKLN-G- 190 (467)
Q Consensus 116 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~~~~~~~--~~g~~~~~afV~f~~~~~A~~a~~~l~-~- 190 (467)
+.. .++|||+|||++.++++|.+.+++.++ |+.|.+..+ +..+++|||||+|.+...|.-|...|- +
T Consensus 161 Sva--------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 161 SVA--------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred eee--------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 754 378999999999999999999999984 667777766 456789999999999999999998774 3
Q ss_pred CccCCeeeEecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHH
Q 012257 191 MLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270 (467)
Q Consensus 191 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~ 270 (467)
..++|..+.|.|+-+..+.... .......|||+||+.++|+|.|..+|++||.|++++.+++ ||||.|.+.+
T Consensus 233 ~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~ 304 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAERE 304 (506)
T ss_pred eeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchH
Confidence 3589999999998776555444 5556678999999999999999999999999999998765 9999999999
Q ss_pred HHHHHHHHhCCCccCCceEEEcccccchHHH
Q 012257 271 DAARSVEALNGKKFDDKEWYVGKAQKKYERE 301 (467)
Q Consensus 271 ~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~ 301 (467)
+|.+|++.+++..++|..|.+..+++.....
T Consensus 305 davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 305 DAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999999999998865543
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-39 Score=269.26 Aligned_cols=235 Identities=24% Similarity=0.447 Sum_probs=196.1
Q ss_pred CCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccc
Q 012257 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204 (467)
Q Consensus 125 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~ 204 (467)
+..++|||+||...+|++-|..+|+..|.|.+|+++.+ .+.+.+..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 45679999999999999999999999999999998875 22333333
Q ss_pred cccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCc
Q 012257 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK 283 (467)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 283 (467)
.. ...+.......-.++|+.|...++.++|++.|.+||+|.+++++++ .+++++||+||.|...++|+.|+..|+|.+
T Consensus 50 ~p-~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 50 AP-GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred Cc-ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 32 1111222222456899999999999999999999999999999999 679999999999999999999999999999
Q ss_pred cCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccc
Q 012257 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRG 363 (467)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g 363 (467)
++++.++..|+.++...........+. .-....++.++|||+|++..++|++|++.|++||.|.+||+.++ +|
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~ltfde--V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qG 201 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKPLTFDE--VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QG 201 (321)
T ss_pred eccceeeccccccCccccCCCCccHHH--HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cc
Confidence 999999999999877322211111111 11234567889999999999999999999999999999999998 67
Q ss_pred eEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhH
Q 012257 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 364 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
|+||.|++.|+|.+||..+||..++|..+++.|-+...
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 99999999999999999999999999999999987544
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=288.74 Aligned_cols=343 Identities=26% Similarity=0.410 Sum_probs=275.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
.||||++||+.++.++|.++|+..|+|..+.++.++.++.++||+||+|+=.||+++|++...+..|.|+.|+|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999776432
Q ss_pred cccc------------------------cCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEe
Q 012257 120 PTIR------------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175 (467)
Q Consensus 120 ~~~~------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f 175 (467)
.... .....+|.|+|||..+.+.+|..+|+.||.|.+|.|.+..+|.-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 2111 1114579999999999999999999999999999999888888889999999
Q ss_pred CCHHHHHHHHHHhcCCccCCeeeEecccccccccccccc-----------------------------------------
Q 012257 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD----------------------------------------- 214 (467)
Q Consensus 176 ~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~----------------------------------------- 214 (467)
....+|..|++.+|+..|.|+.|.|.|+..+........
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999988876543332100
Q ss_pred -------------------------------------------cccccceeecCCCccCCHHHHHHhhcccCCeeEEEEE
Q 012257 215 -------------------------------------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251 (467)
Q Consensus 215 -------------------------------------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~ 251 (467)
.....++||.|||+++++++|.+.|++||.|..+.+.
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0000459999999999999999999999999999988
Q ss_pred EC-CCCCceeEEEEEeCCHHHHHHHHHHhC-----C-CccCCceEEEcccccchHHHHHhhhh-----------------
Q 012257 252 RD-ADGKSKCFGFVNFDDPDDAARSVEALN-----G-KKFDDKEWYVGKAQKKYEREMELKGK----------------- 307 (467)
Q Consensus 252 ~~-~~~~~~g~afv~f~~~~~a~~a~~~l~-----~-~~~~~~~l~~~~~~~~~~~~~~~~~~----------------- 307 (467)
.+ .++.+.|.|||.|.+..+|..|+.... + ..++|+.|.+..+-.+..........
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG 405 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREG 405 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccC
Confidence 88 568999999999999999999998762 2 56889999998876543332210000
Q ss_pred ----------------------hh----hhhhccccCCCCceEEEecCCCCCCHHHHHHhhcc----C-CceeE-EEEee
Q 012257 308 ----------------------FE----QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSE----F-GTITS-CKVMR 355 (467)
Q Consensus 308 ----------------------~~----~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~----~-G~v~~-v~i~~ 355 (467)
.. ....++.--...+.|.|.|||..+++..|..+... | +.+.. ++.+.
T Consensus 406 ~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~ 485 (678)
T KOG0127|consen 406 LIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIK 485 (678)
T ss_pred ccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhh
Confidence 00 00001111123446889999999999999988743 2 33322 44444
Q ss_pred CC----CCCccceEEEEcCCHHHHHHHHHHh
Q 012257 356 DP----NGISRGSGFVAFSTAEEASKALTEM 382 (467)
Q Consensus 356 ~~----~~~~~g~afV~f~~~~~A~~A~~~l 382 (467)
.. .+.+.||+|+.|..++.|.+|+..+
T Consensus 486 ~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 486 FLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 32 4667899999999999999999865
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.5e-38 Score=301.68 Aligned_cols=170 Identities=22% Similarity=0.487 Sum_probs=154.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
..++|||+|||++++|++|+++|+.||+|.+|++.+|+.+++++|||||+|.+.++|++|++.+|+..+.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred cCccc---------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHH
Q 012257 118 RDPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187 (467)
Q Consensus 118 ~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~ 187 (467)
..+.. .....++|||+||+.++++++|+++|+.||.|.++++.++ .+|.++|||||+|.+.++|..|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 32211 1123468999999999999999999999999999999998 5678999999999999999999999
Q ss_pred hcCCccCCeeeEeccccccc
Q 012257 188 LNGMLLNDKQVFVGPFLRKQ 207 (467)
Q Consensus 188 l~~~~~~g~~~~v~~~~~~~ 207 (467)
||+..+.|+.|+|.++..+.
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999998877543
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.3e-37 Score=301.45 Aligned_cols=342 Identities=22% Similarity=0.307 Sum_probs=230.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
..++.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|+. |++..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 45568899999999999999999999999999999999999999999999999999999999997 89999999999998
Q ss_pred ecccCccc----------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHH
Q 012257 115 YSYRDPTI----------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKS 183 (467)
Q Consensus 115 ~~~~~~~~----------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~ 183 (467)
++...... ......+|||+|||..+++++|+++|+.||.|..|.+..+ .+|.++|||||+|.+.++|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 75432111 0112478999999999999999999999999999999988 567899999999999999999
Q ss_pred HHHHhcCCccCCeeeEecccccccccccccccc-cccce-eecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeE
Q 012257 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-RFNNV-YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261 (467)
Q Consensus 184 a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~-~~~~l-~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~ 261 (467)
|++.|+|..+.|+.|.|.++............. ..... ..+..........+...+...+..-...+ .
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------- 313 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLI-P--------- 313 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccC-C---------
Confidence 999999999999999998865322211110000 00000 00000001112222222221111000000 0
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCC-------
Q 012257 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS------- 334 (467)
Q Consensus 262 afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~------- 334 (467)
........+..+................. .....................+|+|.||....+
T Consensus 314 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 314 ------GTGSKIALMQKLQRDGIIDPNIPSRYATG-----ALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred ------Cccchhhhhcccccccccccccccccccc-----ccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 00000000000000000000000000000 000000000000001224567899999954433
Q ss_pred ---HHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhH
Q 012257 335 ---DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 335 ---~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
.++|++.|++||.|++|.+... ...|++||+|.+.++|.+|++.|||+.|+|+.|.+.|.....
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 3689999999999999998743 346899999999999999999999999999999999987654
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.2e-36 Score=292.64 Aligned_cols=262 Identities=21% Similarity=0.318 Sum_probs=209.0
Q ss_pred CccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh--cCCccCCeeeEecccc
Q 012257 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL--NGMLLNDKQVFVGPFL 204 (467)
Q Consensus 127 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l--~~~~~~g~~~~v~~~~ 204 (467)
++.|||+|||.++++++|+++|+.||.|.+|.+++ ++++|||+|.+.++|..|++.+ ++..+.|+.|.+.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 45799999999999999999999999999999886 4689999999999999999875 6788999999998876
Q ss_pred cccccccc------cccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHH
Q 012257 205 RKQEREST------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278 (467)
Q Consensus 205 ~~~~~~~~------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 278 (467)
........ .......+|+|.||+..+++++|+++|+.||.|.++.+.++. .+++|||+|.+.++|.+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHH
Confidence 54322211 112233478999999999999999999999999999987753 246899999999999999999
Q ss_pred hCCCccCC--ceEEEcccccchH-------H-------------HHHhh----hhhhh----------------------
Q 012257 279 LNGKKFDD--KEWYVGKAQKKYE-------R-------------EMELK----GKFEQ---------------------- 310 (467)
Q Consensus 279 l~~~~~~~--~~l~~~~~~~~~~-------~-------------~~~~~----~~~~~---------------------- 310 (467)
|||..+.+ ..+.+.|++.... + ..... .....
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999965 3677766653110 0 00000 00000
Q ss_pred ---------------hh--------h--------ccccCCCCceEEEecCCC-CCCHHHHHHhhccCCceeEEEEeeCCC
Q 012257 311 ---------------SL--------K--------ETADKFEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPN 358 (467)
Q Consensus 311 ---------------~~--------~--------~~~~~~~~~~l~V~nlp~-~~~~~~l~~~F~~~G~v~~v~i~~~~~ 358 (467)
.. . .......+++|||+||+. .+++++|+++|+.||.|.+|+++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 00 0 000123567999999997 6999999999999999999999987
Q ss_pred CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 359 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
.+|+|||+|.+.++|.+|+..|||..|.|+.|+|++++..
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3579999999999999999999999999999999998654
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.7e-34 Score=286.47 Aligned_cols=258 Identities=21% Similarity=0.341 Sum_probs=207.9
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcC------------CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHH
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM------------GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~------------G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (467)
.+...+..++|||+|||+++++++|+++|+.+ +.|.++.+.+ .+|||||+|.+.++|.+||+
T Consensus 168 ~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~kg~afVeF~~~e~A~~Al~ 241 (509)
T TIGR01642 168 QQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------EKNFAFLEFRTVEEATFAMA 241 (509)
T ss_pred CccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------CCCEEEEEeCCHHHHhhhhc
Confidence 44567778999999999999999999999975 3455555543 45799999999999999995
Q ss_pred HhCCcccCCceeeeeecccCc---------------------------ccccCCCccEEEcCCCCcCCHHHHHHHHhhcC
Q 012257 100 ELNFTPLNGKPIRIMYSYRDP---------------------------TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG 152 (467)
Q Consensus 100 ~l~~~~~~g~~~~v~~~~~~~---------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g 152 (467)
|++..|.|+.|+|....... .......++|||+|||..+++++|+++|+.||
T Consensus 242 -l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 242 -LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred -CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 99999999999996532211 00112346899999999999999999999999
Q ss_pred CeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccccccccc-------------------
Q 012257 153 NILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST------------------- 212 (467)
Q Consensus 153 ~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~------------------- 212 (467)
.|..+.++.+ .+|.++|||||+|.+.++|..|++.|+|..+.|+.|.|.++.........
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQS 400 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhh
Confidence 9999999988 68999999999999999999999999999999999998765432111000
Q ss_pred ---cccccccceeecCCCccC----------CHHHHHHhhcccCCeeEEEEEECC----CCCceeEEEEEeCCHHHHHHH
Q 012257 213 ---ADKTRFNNVYVKNLSETT----------TEDDLKKIFGEFGIITSTAVMRDA----DGKSKCFGFVNFDDPDDAARS 275 (467)
Q Consensus 213 ---~~~~~~~~l~v~nlp~~~----------~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a 275 (467)
........|++.|+.... ..++|+++|++||.|..+.+.... .+...|++||+|.+.++|..|
T Consensus 401 ~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A 480 (509)
T TIGR01642 401 ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKA 480 (509)
T ss_pred hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHH
Confidence 001234567888885321 236799999999999999998652 234578999999999999999
Q ss_pred HHHhCCCccCCceEEEccccc
Q 012257 276 VEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 276 ~~~l~~~~~~~~~l~~~~~~~ 296 (467)
+..|+|..|+|+.+.+.+...
T Consensus 481 ~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 481 MEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999988654
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=260.66 Aligned_cols=277 Identities=29% Similarity=0.454 Sum_probs=228.3
Q ss_pred ccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccc
Q 012257 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (467)
Q Consensus 128 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~ 206 (467)
.+|||++||+.++.++|.++|+.+|+|..+.++.+ ..+.++||+||.|.-.+++++|++..++..+.|+.+.+..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999988 66789999999999999999999999999999999999776544
Q ss_pred cccccccc--------------------cccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEe
Q 012257 207 QERESTAD--------------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266 (467)
Q Consensus 207 ~~~~~~~~--------------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f 266 (467)
........ ......|+|.|||+.+..++|..+|+.||.|..+.|.+..+++..|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 33321100 1113579999999999999999999999999999999888888889999999
Q ss_pred CCHHHHHHHHHHhCCCccCCceEEEcccccchHHHH----------------Hh--------------------------
Q 012257 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM----------------EL-------------------------- 304 (467)
Q Consensus 267 ~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~----------------~~-------------------------- 304 (467)
....+|..|+..+|+..++|+++-+.|+-.+..-.. +.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999854321100 00
Q ss_pred hhhhh---------hh--hhc-------------------cccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEe
Q 012257 305 KGKFE---------QS--LKE-------------------TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354 (467)
Q Consensus 305 ~~~~~---------~~--~~~-------------------~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~ 354 (467)
....+ .. ... ......+.+|||+|||+++++++|.+.|++||.|.++.++
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 00000 00 000 0011124689999999999999999999999999999999
Q ss_pred eCC-CCCccceEEEEcCCHHHHHHHHHHh-----CC-cEecccceEEehhhhhHHHH
Q 012257 355 RDP-NGISRGSGFVAFSTAEEASKALTEM-----NG-KMVVSKPLYVALAQRKEERR 404 (467)
Q Consensus 355 ~~~-~~~~~g~afV~f~~~~~A~~A~~~l-----~g-~~~~g~~l~v~~~~~~~~~~ 404 (467)
.++ ++.++|.|||.|.+..+|.+||+.. .| ..+.|+.|.|..+-++....
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHH
Confidence 988 8999999999999999999999976 34 67789999999987766544
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-34 Score=237.63 Aligned_cols=222 Identities=29% Similarity=0.508 Sum_probs=194.1
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
+.+.|+|||+||..+++|+-|..+|+..|.|+..+|+.| .++|.|
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 456899999999999999999999999999999888765 344444
Q ss_pred cccCccccc---CCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCC
Q 012257 116 SYRDPTIRK---SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGM 191 (467)
Q Consensus 116 ~~~~~~~~~---~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~ 191 (467)
+.......+ .....+||+.|...++.++|++.|..||+|.++++++| .+++++||+||.|-+.++|++||..|+|.
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq 127 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ 127 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe
Confidence 433211111 11446999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred ccCCeeeEeccccccccccccc----------ccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeE
Q 012257 192 LLNDKQVFVGPFLRKQERESTA----------DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCF 261 (467)
Q Consensus 192 ~~~g~~~~v~~~~~~~~~~~~~----------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~ 261 (467)
-|.+|.|+..|+.++....... .....+++|++|++.-+++++|++.|+.||.|.+|++.++ +||
T Consensus 128 WlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 128 WLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred eeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 9999999999998887443222 2445678999999999999999999999999999999987 789
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccc
Q 012257 262 GFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297 (467)
Q Consensus 262 afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~ 297 (467)
+||.|++.+.|..|+-.+|+..+.|..+++.|.+..
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 999999999999999999999999999999999763
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.7e-34 Score=281.74 Aligned_cols=271 Identities=20% Similarity=0.313 Sum_probs=208.7
Q ss_pred CCCccEEEcCCCCcCCHHHHHHHHhhc------------CCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCc
Q 012257 125 SGAGNIFIKNLDKSIDNKALHDTFSTF------------GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (467)
Q Consensus 125 ~~~~~l~v~nlp~~~t~~~l~~~f~~~------------g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~ 192 (467)
...++|||+|||..+++++|+++|..+ +.|..+.+. ..++||||+|.+.++|..|++ |+|..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 346789999999999999999999975 234444332 367999999999999999995 99999
Q ss_pred cCCeeeEecccccccccc-----------------------cccccccccceeecCCCccCCHHHHHHhhcccCCeeEEE
Q 012257 193 LNDKQVFVGPFLRKQERE-----------------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249 (467)
Q Consensus 193 ~~g~~~~v~~~~~~~~~~-----------------------~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~ 249 (467)
+.|+.|.+.......... ........++|||+|||..+++++|.++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 999999986432211000 000122346899999999999999999999999999999
Q ss_pred EEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhh-------hhhhh---hccccC
Q 012257 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK-------FEQSL---KETADK 318 (467)
Q Consensus 250 ~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~ 318 (467)
++.+ .+|.++|||||+|.+.++|..|+..|+|..+.|+.|.+.++............. ..... ......
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGG 406 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccC
Confidence 9887 568899999999999999999999999999999999998875432110000000 00000 001123
Q ss_pred CCCceEEEecCCCC--C--------CHHHHHHhhccCCceeEEEEeeCC----CCCccceEEEEcCCHHHHHHHHHHhCC
Q 012257 319 FEGLNLYVKNLDDS--I--------SDDKLKELFSEFGTITSCKVMRDP----NGISRGSGFVAFSTAEEASKALTEMNG 384 (467)
Q Consensus 319 ~~~~~l~V~nlp~~--~--------~~~~l~~~F~~~G~v~~v~i~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g 384 (467)
.++.+|+|.|+... + ..++|+++|++||.|++|+|+++. .+.+.|+|||+|.+.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 35678999999632 1 136899999999999999998763 345679999999999999999999999
Q ss_pred cEecccceEEehhhhhH
Q 012257 385 KMVVSKPLYVALAQRKE 401 (467)
Q Consensus 385 ~~~~g~~l~v~~~~~~~ 401 (467)
..|+|+.|.|.|.....
T Consensus 487 r~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 487 RKFNDRVVVAAFYGEDC 503 (509)
T ss_pred CEECCeEEEEEEeCHHH
Confidence 99999999999987543
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=269.69 Aligned_cols=328 Identities=25% Similarity=0.399 Sum_probs=264.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
++.+|||+|||+.++|+|++.+| |||.|...+.|.+|-..+++..+.|+.++|....
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 57889999999999999999999 7999999999999999999999999999875543
Q ss_pred cCccc---------------------------------------------------------------------------
Q 012257 118 RDPTI--------------------------------------------------------------------------- 122 (467)
Q Consensus 118 ~~~~~--------------------------------------------------------------------------- 122 (467)
...+.
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 21100
Q ss_pred ------------------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHH
Q 012257 123 ------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184 (467)
Q Consensus 123 ------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a 184 (467)
.......++++|||..+..++|...|..||.|..+.+. + ..-.|+|+|.++.+|..|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~---~G~~aiv~fl~p~eAr~A 437 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P---GGTGAIVEFLNPLEARKA 437 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c---ccceeeeeecCccchHHH
Confidence 00011358999999999999999999999999988544 2 223589999999999999
Q ss_pred HHHhcCCccCCeeeEecccccccccc------------cc--------------------------------cccccccc
Q 012257 185 IDKLNGMLLNDKQVFVGPFLRKQERE------------ST--------------------------------ADKTRFNN 220 (467)
Q Consensus 185 ~~~l~~~~~~g~~~~v~~~~~~~~~~------------~~--------------------------------~~~~~~~~ 220 (467)
+..|....+....+.+.++....-.. .. ......+.
T Consensus 438 frklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~ 517 (725)
T KOG0110|consen 438 FRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK 517 (725)
T ss_pred HHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh
Confidence 99998887777776665443221110 00 00011133
Q ss_pred eeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCC----ceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK----SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 221 l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
||+.|+....+.+++...|...|.|.++.|...++.. +.|||||+|.+.++|..|+..|+|..++|+.+.+.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999999998876553 569999999999999999999999999999999998872
Q ss_pred chHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHH
Q 012257 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A 375 (467)
....... ........+..|.|.|||+..+-.+++++|..||.|.+|+|+... .+.++|||||+|-+..+|
T Consensus 598 k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 598 KPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred ccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 2111111 111122236689999999999999999999999999999999883 556799999999999999
Q ss_pred HHHHHHhCCcEecccceEEehhhhhHH
Q 012257 376 SKALTEMNGKMVVSKPLYVALAQRKEE 402 (467)
Q Consensus 376 ~~A~~~l~g~~~~g~~l~v~~~~~~~~ 402 (467)
.+|+.+|.+..+.||+|.++|++....
T Consensus 669 ~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 669 KNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999985543
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.5e-32 Score=246.83 Aligned_cols=170 Identities=27% Similarity=0.503 Sum_probs=153.1
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
......++|||+|||++++|++|+++|+.||+|++|+|++|+.+++++|||||+|.+.++|++|++.|++..+.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34446799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCc
Q 012257 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (467)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~ 192 (467)
.++.... .....++|||+|||..+++++|+++|++||.|..++++.+ .++.++++|||+|.+.++|++|++.|++..
T Consensus 182 ~~a~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 182 SYARPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ecccccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9876432 2234568999999999999999999999999999999988 689999999999999999999999999998
Q ss_pred cCC--eeeEeccccc
Q 012257 193 LND--KQVFVGPFLR 205 (467)
Q Consensus 193 ~~g--~~~~v~~~~~ 205 (467)
+.+ +.|.|.++..
T Consensus 260 ~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 260 PEGGSQPLTVRLAEE 274 (346)
T ss_pred cCCCceeEEEEECCc
Confidence 876 5677765543
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.3e-30 Score=239.72 Aligned_cols=249 Identities=40% Similarity=0.636 Sum_probs=225.4
Q ss_pred cEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccccc
Q 012257 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208 (467)
Q Consensus 129 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~ 208 (467)
.|+|+ +++|+..|.++|+.+|+|+++++.++. + +-|||||.|.++++|.+|++.+|...+.|+.+++.|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 57888 899999999999999999999999998 6 999999999999999999999999999999999998866644
Q ss_pred cccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 012257 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288 (467)
Q Consensus 209 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 288 (467)
. ++|.||++.++..+|.+.|+.||.|.++++..+.+| ++|| ||+|++.+.|.+|+..+||..+.++.
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 3 999999999999999999999999999999999888 7899 99999999999999999999999999
Q ss_pred EEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEE
Q 012257 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368 (467)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~ 368 (467)
+.+.....+.++...... .. ..-..++|.+++.+.+++.|.++|+.||.|.++.++.+..|.+++|+||.
T Consensus 145 i~vg~~~~~~er~~~~~~-~~---------~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE-YK---------KRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc-hh---------hhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999888876665433322 11 12236999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCcEecccceEEehhhhhHHHHH
Q 012257 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405 (467)
Q Consensus 369 f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 405 (467)
|.+.++|..|+..|++..+.++.+.|.-+..+.++..
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~ 251 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREA 251 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHH
Confidence 9999999999999999999999999998877554443
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.7e-30 Score=236.55 Aligned_cols=170 Identities=33% Similarity=0.558 Sum_probs=152.5
Q ss_pred cccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcc
Q 012257 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293 (467)
Q Consensus 215 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~ 293 (467)
....++|||++||.++++++|+++|+.||.|.++.++.+ .+++++|||||+|.+.++|..|+..|++..+.++.+.+.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345578999999999999999999999999999999988 5788999999999999999999999999999999999988
Q ss_pred cccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCH
Q 012257 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTA 372 (467)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~ 372 (467)
+..... .....+|||+|||..+++++|+++|++||.|++++|+++. +++++|||||+|.+.
T Consensus 184 a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 754211 1134579999999999999999999999999999999987 789999999999999
Q ss_pred HHHHHHHHHhCCcEecc--cceEEehhhhhHH
Q 012257 373 EEASKALTEMNGKMVVS--KPLYVALAQRKEE 402 (467)
Q Consensus 373 ~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~ 402 (467)
++|.+|++.||+..+.+ ++|+|++++....
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999999999876 6899999886543
No 25
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=214.91 Aligned_cols=350 Identities=21% Similarity=0.238 Sum_probs=256.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc--ccCCcee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGKPI 111 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~~ 111 (467)
....+++.|.+||||++++|+||.+++.+||.|+.+.+.+.+. .||++|.+.+.|..-+...... .+.|+++
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcce
Confidence 3445789999999999999999999999999999999988764 7999999999998855433222 2567777
Q ss_pred eeeecccCc-------c---------------------cc--cC--------CCccEEEcCCCCcCCHHHHHHHHhhcCC
Q 012257 112 RIMYSYRDP-------T---------------------IR--KS--------GAGNIFIKNLDKSIDNKALHDTFSTFGN 153 (467)
Q Consensus 112 ~v~~~~~~~-------~---------------------~~--~~--------~~~~l~v~nlp~~~t~~~l~~~f~~~g~ 153 (467)
.|.++.-.. . .. .. .--+++|.|+-+.++-|-|..+|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 776643210 0 00 00 0114778999999999999999999999
Q ss_pred eEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccccccc-----------ccc--------c---
Q 012257 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ-----------ERE--------S--- 211 (467)
Q Consensus 154 v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~-----------~~~--------~--- 211 (467)
|..|....+.. .-.|.|+|.+...|..|...|+|..|.+..+.+.....+. .+. .
T Consensus 177 VlKIiTF~Knn---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 177 VLKIITFTKNN---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred eEEEEEEeccc---chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 98887666532 2359999999999999999999998766544331111000 000 0
Q ss_pred -----------------------------------ccccc--cccceeecCCCc-cCCHHHHHHhhcccCCeeEEEEEEC
Q 012257 212 -----------------------------------TADKT--RFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRD 253 (467)
Q Consensus 212 -----------------------------------~~~~~--~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~ 253 (467)
..-.. ....|.+.|+.. .+|.+.|..+|.-||+|.++++...
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 00000 124567778754 5899999999999999999999987
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHH-------hh---------hhhhhhhhc-cc
Q 012257 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME-------LK---------GKFEQSLKE-TA 316 (467)
Q Consensus 254 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~-------~~---------~~~~~~~~~-~~ 316 (467)
+. ..|.|++.+...|.-|+..|+|..+.|+.+++.++++..-.... .. ........+ ..
T Consensus 334 kk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~n 409 (492)
T KOG1190|consen 334 KK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQN 409 (492)
T ss_pred CC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccc
Confidence 43 47999999999999999999999999999999998764321100 00 000000001 11
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEeccc-ceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~ 395 (467)
-.+++.+|+..|+|..++||+|+..|..-|...+....-. +.+.+|++.+.+.|+|..|+-.++++.+++. .|+|+
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 2256678999999999999999999988876655433322 2345999999999999999999999999765 89999
Q ss_pred hhhh
Q 012257 396 LAQR 399 (467)
Q Consensus 396 ~~~~ 399 (467)
|++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9874
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=212.44 Aligned_cols=169 Identities=22% Similarity=0.484 Sum_probs=151.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeeccc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 118 (467)
.|+|||+.|.+++.|+.|+..|..||+|++|.+..|..|++++|||||+|+-+|.|+.|++.+|+..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred Cccc---------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHh
Q 012257 119 DPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188 (467)
Q Consensus 119 ~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l 188 (467)
-+.- ....-++|||..+-++++++||+..|+.||+|..|.+-++ ..+.++||+|++|.+...-..|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 2111 1122358999999999999999999999999999999999 45668999999999999999999999
Q ss_pred cCCccCCeeeEeccccccc
Q 012257 189 NGMLLNDKQVFVGPFLRKQ 207 (467)
Q Consensus 189 ~~~~~~g~~~~v~~~~~~~ 207 (467)
|-..+.|..++|..+....
T Consensus 273 NlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chhhcccceEecccccCCC
Confidence 9999999999997776543
No 27
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.96 E-value=4.1e-28 Score=213.70 Aligned_cols=239 Identities=19% Similarity=0.240 Sum_probs=199.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
.|.+||.|||+++..++|+++|++ -|+|+.|.++.|. .|+++|||.|+|+++|.++||++.|+...+.|++|.|....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456999999999999999999975 5899999999996 78999999999999999999999999999999999997654
Q ss_pred cCccc----ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCcc
Q 012257 118 RDPTI----RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193 (467)
Q Consensus 118 ~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~ 193 (467)
..... ........|++++....-..-|...|+.-|.+..-.+.+|.++.+++..++.|.+.-++..++..+.....
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 32211 11234578999999999889999999888888888888889999999999999999888888876665544
Q ss_pred CCeeeEecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHH
Q 012257 194 NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273 (467)
Q Consensus 194 ~g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~ 273 (467)
.-+.+.. ...+....+||.||...+....|.+.|.-.|.|..+.+..++.+.++|++.++|...-.|.
T Consensus 203 Flr~~h~------------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveav 270 (608)
T KOG4212|consen 203 FLRSLHI------------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAV 270 (608)
T ss_pred hhhhccC------------CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHH
Confidence 4444432 1223346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCceEE
Q 012257 274 RSVEALNGKKFDDKEWY 290 (467)
Q Consensus 274 ~a~~~l~~~~~~~~~l~ 290 (467)
.|+..+++..+..++..
T Consensus 271 qaIsml~~~g~~~~~~~ 287 (608)
T KOG4212|consen 271 QAISMLDRQGLFDRRMT 287 (608)
T ss_pred HHHHhhccCCCccccce
Confidence 99998886554444433
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.9e-28 Score=215.82 Aligned_cols=175 Identities=30% Similarity=0.569 Sum_probs=150.6
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCc-cCC--ceEEEc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK-FDD--KEWYVG 292 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~--~~l~~~ 292 (467)
..-.+||+.+|+.++|.||+++|++||.|.+|.+++| .++.++|||||.|.+.++|.+|+.+|+... +.| ..+.++
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3457999999999999999999999999999999999 568899999999999999999999998865 334 356666
Q ss_pred ccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCH
Q 012257 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372 (467)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~ 372 (467)
++....++. ...++|||+.|+..+||.+|+++|++||.|++|+|+++..+.+||||||.|.+.
T Consensus 113 ~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 665433221 345579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEe-cc--cceEEehhhhhHHHHHHHH
Q 012257 373 EEASKALTEMNGKMV-VS--KPLYVALAQRKEERRARLQ 408 (467)
Q Consensus 373 ~~A~~A~~~l~g~~~-~g--~~l~v~~~~~~~~~~~~~~ 408 (467)
+.|..||+.|||..- .| .+|.|+||++++.+..++.
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~l 214 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRL 214 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHH
Confidence 999999999999844 44 5899999998776654443
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=7.3e-28 Score=231.62 Aligned_cols=176 Identities=26% Similarity=0.443 Sum_probs=150.8
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~ 295 (467)
..++|||+||+..+++++|+++|+.||.|.++.+..+ .+++++|||||+|.+.++|..|+..++|..+.|+.+.+.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 3467999999999999999999999999999999988 578899999999999999999999999999999999998654
Q ss_pred cchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHH
Q 012257 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (467)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~ 374 (467)
......... ..........++|||+||+..+++++|+++|+.||.|+++++.++. +|+++|||||+|.+.++
T Consensus 186 ~~p~a~~~~-------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 186 NMPQAQPII-------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred ccccccccc-------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 321110000 0000111234689999999999999999999999999999999987 57799999999999999
Q ss_pred HHHHHHHhCCcEecccceEEehhhh
Q 012257 375 ASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
|.+|++.|||..++|+.|+|.++.+
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999999999999999999875
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=4.2e-27 Score=222.60 Aligned_cols=170 Identities=31% Similarity=0.509 Sum_probs=149.1
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC--ceeeeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v~~ 115 (467)
..++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|++|++.|++..+.| ..+.+.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999999899999999999999999999999999998877 5567766
Q ss_pred cccCccc------------------c------------------------------------------------------
Q 012257 116 SYRDPTI------------------R------------------------------------------------------ 123 (467)
Q Consensus 116 ~~~~~~~------------------~------------------------------------------------------ 123 (467)
+...... .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 5322100 0
Q ss_pred ------------------cCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHH
Q 012257 124 ------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184 (467)
Q Consensus 124 ------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a 184 (467)
.....+|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 001125999999999999999999999999999999999 5899999999999999999999
Q ss_pred HHHhcCCccCCeeeEeccccccc
Q 012257 185 IDKLNGMLLNDKQVFVGPFLRKQ 207 (467)
Q Consensus 185 ~~~l~~~~~~g~~~~v~~~~~~~ 207 (467)
++.|+|..+.|+.|.|.+...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999998876553
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=3.8e-27 Score=220.63 Aligned_cols=259 Identities=23% Similarity=0.390 Sum_probs=215.5
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
..+..+.|+|+|||..+..++|..+|.+||.|..|.+.+... -|+|.|.++.+|.+|++.|.+..+..-++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 566789999999999999999999999999999996653322 49999999999999999999888888888776
Q ss_pred ecccCc----------------------cc----------c----------------cCCCccEEEcCCCCcCCHHHHHH
Q 012257 115 YSYRDP----------------------TI----------R----------------KSGAGNIFIKNLDKSIDNKALHD 146 (467)
Q Consensus 115 ~~~~~~----------------------~~----------~----------------~~~~~~l~v~nlp~~~t~~~l~~ 146 (467)
|+...- .. . ....++|||.||+.+.+.+++..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 643210 00 0 00113499999999999999999
Q ss_pred HHhhcCCeEEEEEeeCCCCC----ceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccccccc---ccccccccc
Q 012257 147 TFSTFGNILSCKVATDSLGQ----SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE---STADKTRFN 219 (467)
Q Consensus 147 ~f~~~g~v~~~~~~~~~~g~----~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~~~---~~~~~~~~~ 219 (467)
+|...|.|.++.|.+..++. +.|||||+|.+.++|+.|++.|+|+.++|+.|.+..+-.+.... ........+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccc
Confidence 99999999999888775543 55999999999999999999999999999999997765221111 111122246
Q ss_pred ceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccch
Q 012257 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (467)
Q Consensus 220 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~ 298 (467)
.|+|.|+|...+..+++.+|..||.+.++.+... ..+..+|||||+|.+..+|..|+.+|.+.++.|++|...|+....
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 8999999999999999999999999999999887 445579999999999999999999999999999999999998765
Q ss_pred H
Q 012257 299 E 299 (467)
Q Consensus 299 ~ 299 (467)
.
T Consensus 695 ~ 695 (725)
T KOG0110|consen 695 T 695 (725)
T ss_pred H
Confidence 5
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=6.7e-28 Score=219.65 Aligned_cols=329 Identities=21% Similarity=0.292 Sum_probs=227.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
.++..+++|+--|.-.+++.+|+++|+.+|.|-+|.++.|+.+++++|.|||+|.+.++...|+. |.|..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 44567899999999999999999999999999999999999999999999999999999999996 89999999999997
Q ss_pred ecccCccc--------c----cCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCC-CCCceeEEEEEeCCHHHH
Q 012257 115 YSYRDPTI--------R----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESA 181 (467)
Q Consensus 115 ~~~~~~~~--------~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~-~g~~~~~afV~f~~~~~A 181 (467)
.+...... . ...-.+|+|+||-.++++++|+.+|+.||.|..|.+.++. +|.++||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 75432111 1 1111238999999999999999999999999999999994 999999999999999999
Q ss_pred HHHHHHhcCCccCCeeeEecccccccccccccccc-cccceeecCCCccC-CHHHHHHhhcccCCeeEEEEEECCCCCce
Q 012257 182 KSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-RFNNVYVKNLSETT-TEDDLKKIFGEFGIITSTAVMRDADGKSK 259 (467)
Q Consensus 182 ~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~-~~~~l~v~nlp~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~ 259 (467)
.+|+..|||.++-|+.|+|................ ...-.--.+|+.-. ...++...|.+.-.+ .+
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~---~~--------- 401 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGR---SL--------- 401 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCc---cc---------
Confidence 99999999999999999986554443322110000 00000001111110 112222222211000 00
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCC--C---
Q 012257 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI--S--- 334 (467)
Q Consensus 260 g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~--~--- 334 (467)
..+...+..++..+......+....+.-..+ ....+.-..++.++.+.|+-... |
T Consensus 402 ------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p--------------~~~~p~~~i~t~C~lL~nMFdpstete~n 461 (549)
T KOG0147|consen 402 ------PSTAISALLLLAKLASAAQFNGVVRVRSVDP--------------ADASPAFDIPTQCLLLSNMFDPSTETEPN 461 (549)
T ss_pred ------cchhhhHHHhccccchHHhhcCCcCccccCc--------------cccccccCCccHHHHHhhcCCcccccCcc
Confidence 0111222222222222211111111100000 00011112566678888883222 2
Q ss_pred -----HHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 335 -----DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 335 -----~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
.++|.+-+++||+|..|.+-++ +-|+.||.|.+.++|..|+++|||.+|.|+.|..+|-...
T Consensus 462 ~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 462 WDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred hhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 2688889999999998887665 3479999999999999999999999999999999987644
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=3.7e-25 Score=216.53 Aligned_cols=176 Identities=31% Similarity=0.507 Sum_probs=150.8
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~ 295 (467)
..++|||+|||..+++++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|..|+. +++..+.|+.+.+....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 3478999999999999999999999999999999988 468899999999999999999997 99999999999998765
Q ss_pred cchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHH
Q 012257 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (467)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~ 374 (467)
........... ..........+|||+|||..+++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++
T Consensus 167 ~~~~~~~~~~~------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 167 AEKNRAAKAAT------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred hhhhhhhhccc------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 43222111000 001112236789999999999999999999999999999999887 46899999999999999
Q ss_pred HHHHHHHhCCcEecccceEEehhhh
Q 012257 375 ASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
|.+|+..|||..|.|+.|.|.|+..
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999763
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=9.8e-26 Score=175.92 Aligned_cols=170 Identities=34% Similarity=0.635 Sum_probs=153.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeeccc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 118 (467)
..+|||+||+..++++-|+++|-+.|+|.++.+.+|+.+..++||||++|.+.|||+-|++-|+...+.|++|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas- 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS- 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEE-EEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 012257 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (467)
Q Consensus 119 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~ 196 (467)
....+.....++||+||.+.+++..|.+.|+.||.+.. -+++++ .+|.+++++||-|.+.+.+..|+..++|..+.++
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr 167 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR 167 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC
Confidence 33333444579999999999999999999999998754 356666 6789999999999999999999999999999999
Q ss_pred eeEeccccccccc
Q 012257 197 QVFVGPFLRKQER 209 (467)
Q Consensus 197 ~~~v~~~~~~~~~ 209 (467)
.+.+..+..+...
T Consensus 168 ~itv~ya~k~~~k 180 (203)
T KOG0131|consen 168 PITVSYAFKKDTK 180 (203)
T ss_pred ceEEEEEEecCCC
Confidence 9999887665443
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=184.20 Aligned_cols=167 Identities=33% Similarity=0.619 Sum_probs=151.8
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~ 295 (467)
..++|+|..||..++.||++.+|...|+|++++++++ .+|.+-||+||.|-+.++|.+|+..+||..+..+.++|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 3468999999999999999999999999999999999 579999999999999999999999999999999999999997
Q ss_pred cchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHH
Q 012257 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (467)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~ 374 (467)
+.... .....|||++||..+|..||.++|++||.|.--+|+.|. +|.++|.+||.|+.+.+
T Consensus 120 PSs~~------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 120 PSSDS------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred CChhh------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 75332 234479999999999999999999999999999999888 89999999999999999
Q ss_pred HHHHHHHhCCcEeccc--ceEEehhhhhH
Q 012257 375 ASKALTEMNGKMVVSK--PLYVALAQRKE 401 (467)
Q Consensus 375 A~~A~~~l~g~~~~g~--~l~v~~~~~~~ 401 (467)
|.+||..|||..=.|+ +|.|+|+....
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 9999999999977654 79999987543
No 36
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.93 E-value=9.2e-23 Score=176.63 Aligned_cols=350 Identities=17% Similarity=0.162 Sum_probs=259.7
Q ss_pred CCCCCCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh--CC
Q 012257 26 ANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL--NF 103 (467)
Q Consensus 26 ~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~ 103 (467)
..+...++-...++-.|.|++|-..++|.+|.+.++.||+|..|..+..++ .|.|+|++.+.|+.++... +.
T Consensus 18 ~~e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~ 91 (494)
T KOG1456|consen 18 RREDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQ 91 (494)
T ss_pred CcccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCc
Confidence 355566777778899999999999999999999999999999998887765 7999999999999998742 44
Q ss_pred cccCCceeeeeecccCccccc----CCCcc---EEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeC
Q 012257 104 TPLNGKPIRIMYSYRDPTIRK----SGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFD 176 (467)
Q Consensus 104 ~~~~g~~~~v~~~~~~~~~~~----~~~~~---l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~ 176 (467)
..+.|...-++++......+. ...++ +.|-|--+.+|.+.|..++...|.|..|.|.+. ..-.|.|+|.
T Consensus 92 i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFd 167 (494)
T KOG1456|consen 92 IYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFD 167 (494)
T ss_pred ccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeec
Confidence 567787777777643322221 11222 336676788999999999999999999999885 3457999999
Q ss_pred CHHHHHHHHHHhcCCccCCe--eeEecccccccccccccc----------------------------------------
Q 012257 177 NEESAKSAIDKLNGMLLNDK--QVFVGPFLRKQERESTAD---------------------------------------- 214 (467)
Q Consensus 177 ~~~~A~~a~~~l~~~~~~g~--~~~v~~~~~~~~~~~~~~---------------------------------------- 214 (467)
+.+.|++|.+.|||..|... .|++.++.+.........
T Consensus 168 sv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G 247 (494)
T KOG1456|consen 168 SVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGG 247 (494)
T ss_pred hhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCC
Confidence 99999999999999876443 334433222111000000
Q ss_pred ------------------------------------cccccceeecCCCcc-CCHHHHHHhhcccCCeeEEEEEECCCCC
Q 012257 215 ------------------------------------KTRFNNVYVKNLSET-TTEDDLKKIFGEFGIITSTAVMRDADGK 257 (467)
Q Consensus 215 ------------------------------------~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~ 257 (467)
......++|.+|... ++-+.|.++|..||+|.++++++.+
T Consensus 248 ~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--- 324 (494)
T KOG1456|consen 248 GHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--- 324 (494)
T ss_pred CCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc---
Confidence 000123677777654 5678899999999999999999875
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHH-------------------hhhhhhhhhhccccC
Q 012257 258 SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME-------------------LKGKFEQSLKETADK 318 (467)
Q Consensus 258 ~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 318 (467)
.|.|+|++.+..+.++|+..|++..+.|.+|.+..++...-.... .............-.
T Consensus 325 -~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq 403 (494)
T KOG1456|consen 325 -PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQ 403 (494)
T ss_pred -cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhccccc
Confidence 458999999999999999999999999999998777543211110 000011111112234
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCc-eeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEeccc
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 390 (467)
++++.|+..|.|..+||+.|.++|...+. -.+++++..++-++ ..++++|++.++|..|+..+|...+.+.
T Consensus 404 ~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 404 PPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred CCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccccccc-ccceeeeehHHHHHHHHHHhccccccCC
Confidence 67889999999999999999999976643 46778877664443 4799999999999999999999999653
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.92 E-value=4.2e-23 Score=185.91 Aligned_cols=336 Identities=15% Similarity=0.210 Sum_probs=240.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
..-.|.+++|||.+|++||+++|+.+ .|+++.+.+. +|+..|-|||+|.+.||+++|++ .+...+..+.|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 35678999999999999999999998 6688777653 68889999999999999999998 57778888889886654
Q ss_pred cCccc-------cc--CCCccEEEcCCCCcCCHHHHHHHHhhcCCeEE-EEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 012257 118 RDPTI-------RK--SGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187 (467)
Q Consensus 118 ~~~~~-------~~--~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~ 187 (467)
..+.. .. .....|.+++||..||++||.++|+..-.|.. +.+..+..+++.+-|||+|++.+.|+.|+..
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 33211 11 24567999999999999999999997755544 5667778888999999999999999999975
Q ss_pred hcCCccCCeeeEecccccccccccc------------------------------------------------------c
Q 012257 188 LNGMLLNDKQVFVGPFLRKQEREST------------------------------------------------------A 213 (467)
Q Consensus 188 l~~~~~~g~~~~v~~~~~~~~~~~~------------------------------------------------------~ 213 (467)
+...|..+.|.|-.+.....+... .
T Consensus 165 -hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 165 -HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred -HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 555666777666322111110000 0
Q ss_pred ----------------cc-----------------ccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCcee
Q 012257 214 ----------------DK-----------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260 (467)
Q Consensus 214 ----------------~~-----------------~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g 260 (467)
.. .....+....||...+..+|.++|+....+ .+.+-...+++.+|
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TG 322 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATG 322 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCC
Confidence 00 000236788899999999999999986554 78888889999999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCceEEEccc-----ccchHHH----------H---------H-------hhhhh-
Q 012257 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA-----QKKYERE----------M---------E-------LKGKF- 308 (467)
Q Consensus 261 ~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~-----~~~~~~~----------~---------~-------~~~~~- 308 (467)
-|.|+|.+.++|..|+.. ++..+..+-+..-.. ....... . . +....
T Consensus 323 EAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~~ 401 (510)
T KOG4211|consen 323 EADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRGS 401 (510)
T ss_pred cceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCccccC
Confidence 999999999999999863 333333222221110 0000000 0 0 00000
Q ss_pred ------------------hhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcC
Q 012257 309 ------------------EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370 (467)
Q Consensus 309 ------------------~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~ 370 (467)
....-..........|..+++|...++.++.++|.+++.- .|.+..++.+...+-|-|.|.
T Consensus 402 ~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~~a-~~~~~yd~~~~~~~~a~~~~~ 480 (510)
T KOG4211|consen 402 PYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIRPA-QVELLYDHQFQRSGDARVIFY 480 (510)
T ss_pred CCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccCcc-cccccccccccccCceeEEEe
Confidence 0000001122234468888999999999999999998654 788888887777889999999
Q ss_pred CHHHHHHHHHH
Q 012257 371 TAEEASKALTE 381 (467)
Q Consensus 371 ~~~~A~~A~~~ 381 (467)
+.++++.|+.+
T Consensus 481 ~~~~~q~a~~~ 491 (510)
T KOG4211|consen 481 NRKDYQDALMK 491 (510)
T ss_pred chhhhHHHHHh
Confidence 99999999874
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=7.1e-24 Score=177.69 Aligned_cols=150 Identities=25% Similarity=0.494 Sum_probs=138.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
-+|||+|||..+++.+|+.+|++||+|+++.|+++ |+||-.++...|..|+..|++..|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999864 8999999999999999999999999999999988765
Q ss_pred cccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 012257 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (467)
Q Consensus 120 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~ 199 (467)
....++|+|+||.+.++.+||++.|++||+|.+|.|++ +|+||.|.-.++|..|++.|++.++.|+++.
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceee
Confidence 33467899999999999999999999999999999975 5999999999999999999999999999999
Q ss_pred ecccccccc
Q 012257 200 VGPFLRKQE 208 (467)
Q Consensus 200 v~~~~~~~~ 208 (467)
|..+.....
T Consensus 144 vq~stsrlr 152 (346)
T KOG0109|consen 144 VQLSTSRLR 152 (346)
T ss_pred eeeeccccc
Confidence 977665433
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.5e-23 Score=173.46 Aligned_cols=292 Identities=24% Similarity=0.330 Sum_probs=176.6
Q ss_pred CceeeeeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 012257 108 GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187 (467)
Q Consensus 108 g~~~~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~ 187 (467)
.|.+.|..+.. +.+..+.++|||+-|.+.-+|+|++.+|+.||.+.+|.+.+..+|.++|+|||+|.+..+|..||..
T Consensus 2 nrpiqvkpads--esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 2 NRPIQVKPADS--ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCCcccccccc--ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 35566655432 2233467899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCc-cCC--eeeEecccccccccccccc----------cccc-----------------ccee----ecCCCccCCH-
Q 012257 188 LNGML-LND--KQVFVGPFLRKQERESTAD----------KTRF-----------------NNVY----VKNLSETTTE- 232 (467)
Q Consensus 188 l~~~~-~~g--~~~~v~~~~~~~~~~~~~~----------~~~~-----------------~~l~----v~nlp~~~~~- 232 (467)
|+|.. +.| ..+.|.......++....- ..-. ..+. ...|...++.
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 99874 444 3455544433333221100 0000 0000 0111111111
Q ss_pred ---HHHHHhhcccCCeeEEEEEECCCCCc-----------------eeE-EEEEeCCHHHHHHHHHHhCCCccCC-ceEE
Q 012257 233 ---DDLKKIFGEFGIITSTAVMRDADGKS-----------------KCF-GFVNFDDPDDAARSVEALNGKKFDD-KEWY 290 (467)
Q Consensus 233 ---~~l~~~f~~~g~v~~~~~~~~~~~~~-----------------~g~-afv~f~~~~~a~~a~~~l~~~~~~~-~~l~ 290 (467)
-.....+.--|.+..-.......... .|| +...+..-..|..++. -++..... ..-.
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy-~ng~~pypaQsp~ 238 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVY-ANGLHPYPAQSPT 238 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHh-hcCCccCCCCCcc
Confidence 01111122222211111111100000 001 1222223233333333 12221111 0000
Q ss_pred E-cccccchHHH-----------HHhhhhhh----hhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEe
Q 012257 291 V-GKAQKKYERE-----------MELKGKFE----QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354 (467)
Q Consensus 291 ~-~~~~~~~~~~-----------~~~~~~~~----~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~ 354 (467)
+ ...+...... ........ .-.......+++|+|||..||.+..+.||.+.|-+||.|.+.+++
T Consensus 239 va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVF 318 (371)
T KOG0146|consen 239 VADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVF 318 (371)
T ss_pred ccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeee
Confidence 0 0000000000 00000000 001123456789999999999999999999999999999999999
Q ss_pred eCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhHH
Q 012257 355 RDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402 (467)
Q Consensus 355 ~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 402 (467)
.|. ++.+++|+||.|++..+|+.||.+|||..|+-|+|+|.+.+++..
T Consensus 319 vDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 319 VDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred ehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 987 888999999999999999999999999999999999999988764
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=1e-23 Score=164.71 Aligned_cols=168 Identities=32% Similarity=0.533 Sum_probs=147.1
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~ 295 (467)
...+||++||+..++++-|.++|-+.|.|.++.+.++ .+...+||||++|.+.++|..|++-++...+.|+++++..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3468999999999999999999999999999999988 456689999999999999999999999999999999998876
Q ss_pred cchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEE-EEeeCC-CCCccceEEEEcCCHH
Q 012257 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRDP-NGISRGSGFVAFSTAE 373 (467)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v-~i~~~~-~~~~~g~afV~f~~~~ 373 (467)
..... ...+..|||+||.+.++|..|.+.|+.||.+.+. +++++. +|.++|||||.|++.+
T Consensus 88 ~~~~n-----------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 88 AHQKN-----------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred ccccc-----------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 21110 1122479999999999999999999999998663 667776 5889999999999999
Q ss_pred HHHHHHHHhCCcEecccceEEehhhhhH
Q 012257 374 EASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 374 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
.+.+|+..+||..++.++++|+|+..+.
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecC
Confidence 9999999999999999999999986443
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=176.63 Aligned_cols=148 Identities=23% Similarity=0.514 Sum_probs=137.1
Q ss_pred cceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccch
Q 012257 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (467)
Q Consensus 219 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~ 298 (467)
..|||+|||.+.++.+|+.+|++||.|.++.|+++ |+||..++...+..|+.+|++..++|..++|..++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 35899999999999999999999999999999965 99999999999999999999999999999998776541
Q ss_pred HHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHH
Q 012257 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378 (467)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A 378 (467)
-.+.+|+|+||.+.++-++|+..|++||.|.+|+|.++ ++||.|+-.++|..|
T Consensus 76 --------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 76 --------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEA 128 (346)
T ss_pred --------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHH
Confidence 14457999999999999999999999999999999998 999999999999999
Q ss_pred HHHhCCcEecccceEEehhhhh
Q 012257 379 LTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 379 ~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
++.|+|..|.|++|+|+++..+
T Consensus 129 ir~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred Hhcccccccccceeeeeeeccc
Confidence 9999999999999999987543
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.86 E-value=6e-21 Score=168.80 Aligned_cols=247 Identities=19% Similarity=0.210 Sum_probs=204.2
Q ss_pred CccEEEcCCCCcCCHHHHHHHHh-hcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccccc
Q 012257 127 AGNIFIKNLDKSIDNKALHDTFS-TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (467)
Q Consensus 127 ~~~l~v~nlp~~~t~~~l~~~f~-~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~ 205 (467)
.+.+||+|||++....+|+++|. +.|+|..|.++.|..|+++++|.|+|+++|.+++|++.|+.+.+.|+.|.+.....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 35699999999999999999997 78999999999999999999999999999999999999999999999999966544
Q ss_pred ccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccC
Q 012257 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285 (467)
Q Consensus 206 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 285 (467)
............-...|+.++....-...+...|.--|.+.+..+.++.+..+++..+++|+..-.+..++.-++.....
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 33333333333445788999988888888888888888888888888888889999999999877777666644433333
Q ss_pred CceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceE
Q 012257 286 DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365 (467)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~a 365 (467)
.+.+.. + ..+....+||.||.+.+..+.|++.|.--|.|..+.+..++.|.++|+|
T Consensus 204 lr~~h~-f-----------------------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~ 259 (608)
T KOG4212|consen 204 LRSLHI-F-----------------------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFA 259 (608)
T ss_pred hhhccC-C-----------------------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCee
Confidence 333332 1 1123346999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 366 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
.++|+..-+|..||..|++..+.+++..+.+.
T Consensus 260 vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 260 VIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred EEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 99999999999999999987777777777763
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=1e-20 Score=167.59 Aligned_cols=170 Identities=27% Similarity=0.452 Sum_probs=152.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
+.++|||++|+++++++.|+++|.+||+|.++.+.+|+.+++++||+||+|++.+...+++. .....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 78999999999999999999999999999999999999999999999999999999999997 45567999999998877
Q ss_pred cCcccccCC----CccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCc
Q 012257 118 RDPTIRKSG----AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (467)
Q Consensus 118 ~~~~~~~~~----~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~ 192 (467)
+........ ..+|||++||.+++++++++.|.+||.|..+.++.+ .+..+++|+||.|.+++.+.+++. ...+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 665544444 348999999999999999999999999999988888 778899999999999999999986 47788
Q ss_pred cCCeeeEeccccccccc
Q 012257 193 LNDKQVFVGPFLRKQER 209 (467)
Q Consensus 193 ~~g~~~~v~~~~~~~~~ 209 (467)
+.++.+.|..+.++...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999887766553
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2.2e-20 Score=161.58 Aligned_cols=172 Identities=27% Similarity=0.468 Sum_probs=146.1
Q ss_pred cceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccc
Q 012257 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297 (467)
Q Consensus 219 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~ 297 (467)
.++||+.+..++.++.|+..|..||.|+++.+.-+ .+++.+|||||+|+-.+.|..|++.+||..++|+.+++.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 56999999999999999999999999999999887 57889999999999999999999999999999999999866543
Q ss_pred hHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC-CCccceEEEEcCCHHHHH
Q 012257 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEAS 376 (467)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~-~~~~g~afV~f~~~~~A~ 376 (467)
.....-.+.-.+... .-..|||..+.++++|+||+.+|+.||+|.+|.+-+.++ +.++||+|++|.+..+-.
T Consensus 194 pQAQpiID~vqeeAk-------~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAK-------KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred cccchHHHHHHHHHH-------hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 222111111111000 112699999999999999999999999999999999985 457999999999999999
Q ss_pred HHHHHhCCcEecccceEEehh
Q 012257 377 KALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 377 ~A~~~l~g~~~~g~~l~v~~~ 397 (467)
.|+..||-+.++|.-|+|--+
T Consensus 267 eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HHhhhcchhhcccceEecccc
Confidence 999999999999999998754
No 45
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=2.8e-19 Score=155.74 Aligned_cols=288 Identities=15% Similarity=0.157 Sum_probs=201.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
..+..|..++|||..++.+|..+|+..........+.....|+..|.|.|.|.+.|.-..|++ .+...+.++.+.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 346778999999999999999999877544444445555677788999999999999999998 4566678888988765
Q ss_pred ccCccc--------------ccCCCccEEEcCCCCcCCHHHHHHHHhh----cCCeEEEEEeeCCCCCceeEEEEEeCCH
Q 012257 117 YRDPTI--------------RKSGAGNIFIKNLDKSIDNKALHDTFST----FGNILSCKVATDSLGQSRGYGFVQFDNE 178 (467)
Q Consensus 117 ~~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~----~g~v~~~~~~~~~~g~~~~~afV~f~~~ 178 (467)
...+-. .+.+.--|.+++||+++++.++.++|.. -|..+.+.++..++|+..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 543221 1122334778999999999999999963 2356678888889999999999999999
Q ss_pred HHHHHHHHHhcCCccCCeeeEecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCc
Q 012257 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258 (467)
Q Consensus 179 ~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~ 258 (467)
++|+.|+.. +...+.-|.|.+- ..|..++......+-.- -++..
T Consensus 217 e~aq~aL~k-hrq~iGqRYIElF---------------------------RSTaaEvqqvlnr~~s~---pLi~~----- 260 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIELF---------------------------RSTAAEVQQVLNREVSE---PLIPG----- 260 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHH---------------------------HHhHHHHHHHHHhhccc---cccCC-----
Confidence 999999975 3333333333331 12334444444332100 00000
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHH
Q 012257 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338 (467)
Q Consensus 259 ~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l 338 (467)
+....+.+.. ..... ......+|.+++||+..+.++|
T Consensus 261 --------------------~~sp~~p~~p--~~~~p---------------------~~~~kdcvRLRGLPy~AtvEdI 297 (508)
T KOG1365|consen 261 --------------------LTSPLLPGGP--ARLVP---------------------PTRSKDCVRLRGLPYEATVEDI 297 (508)
T ss_pred --------------------CCCCCCCCCc--cccCC---------------------CCCCCCeeEecCCChhhhHHHH
Confidence 0000000000 00000 0011347999999999999999
Q ss_pred HHhhccCCc-eeE--EEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhHHHH
Q 012257 339 KELFSEFGT-ITS--CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404 (467)
Q Consensus 339 ~~~F~~~G~-v~~--v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 404 (467)
.+||..|.. |+. |++..+..|++.|.|||+|.+.++|..|....+++...++-|.|=-+...+..+
T Consensus 298 L~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 298 LDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred HHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 999999864 444 899999999999999999999999999999888887778888776665555443
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=3.6e-18 Score=150.23 Aligned_cols=246 Identities=17% Similarity=0.245 Sum_probs=190.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC--ceeeeeecc
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG--KPIRIMYSY 117 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v~~~~ 117 (467)
-+++|.|+-+.++-+-|+++|++||.|+.|.-+.+..+ -.|+|+|.+.+.|+.|...|++..|.. ..++|.++.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~----FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG----FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc----hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 56789999999999999999999999999988876543 369999999999999999999987743 446665442
Q ss_pred cC----------------cccccC---------------------------------------------CCccEEEcCC-
Q 012257 118 RD----------------PTIRKS---------------------------------------------GAGNIFIKNL- 135 (467)
Q Consensus 118 ~~----------------~~~~~~---------------------------------------------~~~~l~v~nl- 135 (467)
-. +..... ....|.|.||
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 10 000000 0234677887
Q ss_pred CCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccccccccccccc--
Q 012257 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-- 213 (467)
Q Consensus 136 p~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~-- 213 (467)
+..+|.+.|..+|..||+|..|+|... .+-.|.|+|.+...|..|++.|+|..+.|+.|++..+.-........
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~n----kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYN----KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeec----CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 466799999999999999999999986 23579999999999999999999999999999996553322111100
Q ss_pred ---------------------------ccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEe
Q 012257 214 ---------------------------DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266 (467)
Q Consensus 214 ---------------------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f 266 (467)
.-+.+.++++.|+|.++++|++++.|...|...+...... +.+.++++.+
T Consensus 383 ~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~ 459 (492)
T KOG1190|consen 383 EDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQL 459 (492)
T ss_pred ccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeeccc
Confidence 0123346889999999999999999999888755554433 2345999999
Q ss_pred CCHHHHHHHHHHhCCCccCCc-eEEEccccc
Q 012257 267 DDPDDAARSVEALNGKKFDDK-EWYVGKAQK 296 (467)
Q Consensus 267 ~~~~~a~~a~~~l~~~~~~~~-~l~~~~~~~ 296 (467)
.+.++|..|+-.++...++.. .+++.+++.
T Consensus 460 ~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 460 ESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999988888765 788887764
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.81 E-value=5.7e-18 Score=153.10 Aligned_cols=264 Identities=17% Similarity=0.249 Sum_probs=189.4
Q ss_pred CCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccccc
Q 012257 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (467)
Q Consensus 126 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~ 205 (467)
...-|.+++||.++|++||+++|+.. .|..+.+.+ .+|+..|-|||+|++++++.+|++ .+...+..+.|.|-....
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 34568899999999999999999988 566655544 468889999999999999999998 477788899999866533
Q ss_pred cccccccc-----ccccccceeecCCCccCCHHHHHHhhcccCCeeE-EEEEECCCCCceeEEEEEeCCHHHHHHHHHHh
Q 012257 206 KQERESTA-----DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279 (467)
Q Consensus 206 ~~~~~~~~-----~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 279 (467)
........ .......|.+.+||..++++||.++|+..-.+.. +.+..+..+++.|-|||+|++.+.|+.|+..
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r- 164 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR- 164 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-
Confidence 32211111 1123456889999999999999999998877776 5566677888999999999999999999973
Q ss_pred CCCccCCceEEEcccccchHHHHHhh------------------h-----------------------------------
Q 012257 280 NGKKFDDKEWYVGKAQKKYEREMELK------------------G----------------------------------- 306 (467)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~------------------~----------------------------------- 306 (467)
+...++-+-+.+-.+........... .
T Consensus 165 hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d 244 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQD 244 (510)
T ss_pred HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccc
Confidence 34444444444433322211111100 0
Q ss_pred -----hhh--h--hhhcc-------------ccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccce
Q 012257 307 -----KFE--Q--SLKET-------------ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364 (467)
Q Consensus 307 -----~~~--~--~~~~~-------------~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~ 364 (467)
... . ..... .-......++.++||+..++.++..+|+..-.+ .|+|-..++|+.+|-
T Consensus 245 ~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGE 323 (510)
T KOG4211|consen 245 YGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGE 323 (510)
T ss_pred cccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCc
Confidence 000 0 00000 000112458889999999999999999987555 899999999999999
Q ss_pred EEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 365 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
|+|+|.|.++|..|+.. ++..+..+-+.+-
T Consensus 324 AdveF~t~edav~Amsk-d~anm~hrYVElF 353 (510)
T KOG4211|consen 324 ADVEFATGEDAVGAMGK-DGANMGHRYVELF 353 (510)
T ss_pred ceeecccchhhHhhhcc-CCcccCcceeeec
Confidence 99999999999999974 5555555544443
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.3e-18 Score=136.23 Aligned_cols=149 Identities=19% Similarity=0.334 Sum_probs=126.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
++.+++|||+|||.++-|.||.++|-+||.|..|.+..-. ...+||||+|++..||+.|+...++..++|..|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4678999999999999999999999999999999885322 2347999999999999999999999999999999999
Q ss_pred cccCccc------------------------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEE
Q 012257 116 SYRDPTI------------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYG 171 (467)
Q Consensus 116 ~~~~~~~------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~a 171 (467)
....... ......+|.|.+||...+.++|+++..+.|.|-...+.++ +.+
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~G 153 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVG 153 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cce
Confidence 7654211 1112347999999999999999999999999966666654 478
Q ss_pred EEEeCCHHHHHHHHHHhcCCcc
Q 012257 172 FVQFDNEESAKSAIDKLNGMLL 193 (467)
Q Consensus 172 fV~f~~~~~A~~a~~~l~~~~~ 193 (467)
.|+|...++.+-|+..|+...+
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeehhhHHHHHHhhccccc
Confidence 8999999999999999987654
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=5.7e-18 Score=157.57 Aligned_cols=263 Identities=22% Similarity=0.411 Sum_probs=202.1
Q ss_pred CCCCCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcC-----------C-CeEEEEEEecCCCCccccEEEEEecChHHH
Q 012257 27 NNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM-----------G-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94 (467)
Q Consensus 27 ~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~-----------G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A 94 (467)
.....+....+..+.++|+++|..+.|+....+|..- | .+..+.+-..+ ++||++|.+.++|
T Consensus 163 ~~~~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~a 236 (500)
T KOG0120|consen 163 PTPPMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEA 236 (500)
T ss_pred CCCccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCch
Confidence 3344556667788999999999999999999988653 3 47778776665 4999999999999
Q ss_pred HHHHHHhCCcccCCceeeeeecccCc---------------------ccccCCCccEEEcCCCCcCCHHHHHHHHhhcCC
Q 012257 95 TRALDELNFTPLNGKPIRIMYSYRDP---------------------TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153 (467)
Q Consensus 95 ~~A~~~l~~~~~~g~~~~v~~~~~~~---------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~ 153 (467)
..|+. +++..+.|..+++......- +.......+++|++||..++++++++++..||.
T Consensus 237 t~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~ 315 (500)
T KOG0120|consen 237 TEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP 315 (500)
T ss_pred hhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc
Confidence 99997 78888999988875432210 001123457999999999999999999999999
Q ss_pred eEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccccccccccccccc-----------------
Q 012257 154 ILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK----------------- 215 (467)
Q Consensus 154 v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~----------------- 215 (467)
+....++.+ .+|.++||||.+|.++.....|+..|+|..+.++.+.+..+............
T Consensus 316 lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~ 395 (500)
T KOG0120|consen 316 LKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMA 395 (500)
T ss_pred chhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccC
Confidence 999999999 67999999999999999999999999999999999998766544332222111
Q ss_pred -ccccceeecCC--CccC-C-------HHHHHHhhcccCCeeEEEEEEC-CC---CCceeEEEEEeCCHHHHHHHHHHhC
Q 012257 216 -TRFNNVYVKNL--SETT-T-------EDDLKKIFGEFGIITSTAVMRD-AD---GKSKCFGFVNFDDPDDAARSVEALN 280 (467)
Q Consensus 216 -~~~~~l~v~nl--p~~~-~-------~~~l~~~f~~~g~v~~~~~~~~-~~---~~~~g~afv~f~~~~~a~~a~~~l~ 280 (467)
.....+.+.|+ +.+. + .|+++..+.+||.|..|.+... .. ....|-.||+|.+.++++.|+.+|+
T Consensus 396 g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~ 475 (500)
T KOG0120|consen 396 GIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELT 475 (500)
T ss_pred CCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHcc
Confidence 11122233332 1111 1 2445667889999999998877 33 2356778999999999999999999
Q ss_pred CCccCCceEEEccccc
Q 012257 281 GKKFDDKEWYVGKAQK 296 (467)
Q Consensus 281 ~~~~~~~~l~~~~~~~ 296 (467)
|.+|.++.+...+...
T Consensus 476 GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 476 GRKFANRTVVASYYDE 491 (500)
T ss_pred CceeCCcEEEEEecCH
Confidence 9999999998877654
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.8e-18 Score=143.50 Aligned_cols=169 Identities=28% Similarity=0.457 Sum_probs=142.6
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc-cCC--ceeeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNG--KPIRIM 114 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~~~v~ 114 (467)
+.++|||+-|...-.|+|++++|..||.|.++.+++.. .|.++|||||.|.+-.+|+.||..|++.. .-| ..+-|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57999999999999999999999999999999999985 78999999999999999999999998642 322 334443
Q ss_pred ecccCccc------------------------------------------------------------------------
Q 012257 115 YSYRDPTI------------------------------------------------------------------------ 122 (467)
Q Consensus 115 ~~~~~~~~------------------------------------------------------------------------ 122 (467)
++....+.
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 33221000
Q ss_pred --------------------------------------------------------------------------------
Q 012257 123 -------------------------------------------------------------------------------- 122 (467)
Q Consensus 123 -------------------------------------------------------------------------------- 122 (467)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred ------------------------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCC
Q 012257 123 ------------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDN 177 (467)
Q Consensus 123 ------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~ 177 (467)
...+.++|||..||....+.||-..|-.||.|.+.++..| -+..++-|+||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 1123357999999999999999999999999999999888 788899999999999
Q ss_pred HHHHHHHHHHhcCCccCCeeeEeccccccc
Q 012257 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (467)
Q Consensus 178 ~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~ 207 (467)
+..|+.||..+||..|.-++++|....++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999987655543
No 51
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=4.6e-18 Score=136.12 Aligned_cols=88 Identities=36% Similarity=0.615 Sum_probs=81.1
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
......+++|||+|||++++|++|+++|++||.|.++.+..|+.+++++|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33345578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCc
Q 012257 113 IMYSYRDP 120 (467)
Q Consensus 113 v~~~~~~~ 120 (467)
|.++...+
T Consensus 108 V~~a~~~~ 115 (144)
T PLN03134 108 VNPANDRP 115 (144)
T ss_pred EEeCCcCC
Confidence 99986543
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=1e-18 Score=160.15 Aligned_cols=178 Identities=24% Similarity=0.416 Sum_probs=148.1
Q ss_pred ccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccc
Q 012257 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (467)
Q Consensus 216 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~ 294 (467)
...+++|+.-+....+.-+|.++|+.+|.|.++.++.+ ..+.++|.+||+|.+.+....|+. |.|..+.|.++.+...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 34477888888888999999999999999999999998 457799999999999999888885 9999999999999877
Q ss_pred ccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHH
Q 012257 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373 (467)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~ 373 (467)
........+...... ...-..+...|||+||-+++++++|+.+|++||.|+.|.+.++. +|.++||+||+|.+.+
T Consensus 256 Eaeknr~a~~s~a~~----~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 256 EAEKNRAANASPALQ----GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred HHHHHHHHhcccccc----ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 654443221111111 01111122239999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHhCCcEecccceEEehhh
Q 012257 374 EASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 374 ~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
+|.+|++.|||..+-|+.|+|....
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEee
Confidence 9999999999999999999998654
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=7.3e-18 Score=156.86 Aligned_cols=270 Identities=21% Similarity=0.388 Sum_probs=200.2
Q ss_pred CccEEEcCCCCcCCHHHHHHHHhhc-----------C-CeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccC
Q 012257 127 AGNIFIKNLDKSIDNKALHDTFSTF-----------G-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (467)
Q Consensus 127 ~~~l~v~nlp~~~t~~~l~~~f~~~-----------g-~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~ 194 (467)
...++|+++|..+++++...+|..- | .+..+.+.. .+++||++|.+.++|..|+. +++..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhc-ccchhhC
Confidence 4579999999999999999988643 2 355555543 57899999999999999996 6788888
Q ss_pred CeeeEecccccccccc-----------------cccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCC
Q 012257 195 DKQVFVGPFLRKQERE-----------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADG 256 (467)
Q Consensus 195 g~~~~v~~~~~~~~~~-----------------~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~ 256 (467)
|..+.+.......... ..........+++++||...++++++++...||.+....+..+ .+|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 8777663322221111 1111223357999999999999999999999999999999888 558
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhh---hhhh---ccccCCCCceEEEecC-
Q 012257 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE---QSLK---ETADKFEGLNLYVKNL- 329 (467)
Q Consensus 257 ~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~l~V~nl- 329 (467)
.++||||.+|.+......|++.|||..++++.+.+..+............... .... ......+...|...|+
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 89999999999999999999999999999999999888665433322222000 0000 0112223333444443
Q ss_pred -CCCC-CH-------HHHHHhhccCCceeEEEEeeC-CC---CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 330 -DDSI-SD-------DKLKELFSEFGTITSCKVMRD-PN---GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 330 -p~~~-~~-------~~l~~~F~~~G~v~~v~i~~~-~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
|.++ .+ ++++.-+++||.|.+|.+.++ .+ ..+.|..||+|++.+++++|+++|+|..|.|+.+..+|
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 1111 11 567777889999999999988 33 34578999999999999999999999999999999999
Q ss_pred hhhhHH
Q 012257 397 AQRKEE 402 (467)
Q Consensus 397 ~~~~~~ 402 (467)
....+-
T Consensus 489 ydeDkY 494 (500)
T KOG0120|consen 489 YDEDKY 494 (500)
T ss_pred cCHHHh
Confidence 876543
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.77 E-value=2.2e-17 Score=135.17 Aligned_cols=156 Identities=24% Similarity=0.480 Sum_probs=132.8
Q ss_pred ccCeEEEcCCCCCCCHHHHHH----HHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYD----LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~----~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
+..||||.||+..+..++|++ +|+.||.|.+|...+ +.+.+|.|||.|.+.+.|..|+..|+|.+|.|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999887 999999999999884 5668899999999999999999999999999999999
Q ss_pred eecccCcccc------------------------------------------------cCCCccEEEcCCCCcCCHHHHH
Q 012257 114 MYSYRDPTIR------------------------------------------------KSGAGNIFIKNLDKSIDNKALH 145 (467)
Q Consensus 114 ~~~~~~~~~~------------------------------------------------~~~~~~l~v~nlp~~~t~~~l~ 145 (467)
.++..+...- ......+++.|||..++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 9876542110 1112458999999999999999
Q ss_pred HHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEe
Q 012257 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFV 200 (467)
Q Consensus 146 ~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~-g~~~~v 200 (467)
.+|..|....+++++.. .++.|||+|.+...|..|...+++..+. ...+.+
T Consensus 165 ~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred HHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 99999999999998874 5679999999999999999999887765 445544
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.76 E-value=5.4e-17 Score=131.29 Aligned_cols=153 Identities=19% Similarity=0.324 Sum_probs=118.8
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE-EecCCCCccccEEEEEecChHHHHHHHHHhCCccc---CCceeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL---NGKPIRI 113 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~~~v 113 (467)
.-|+|||++||.++...||+.+|++|--.+...+ ..++...-.+.+|||+|.+.++|..|++.|||..| .+..++|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3699999999999999999999999833333333 33444344568999999999999999999999987 5788888
Q ss_pred eecccCcccccC--------------------------------------------------------------------
Q 012257 114 MYSYRDPTIRKS-------------------------------------------------------------------- 125 (467)
Q Consensus 114 ~~~~~~~~~~~~-------------------------------------------------------------------- 125 (467)
..++.+....+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 876654211000
Q ss_pred ----------------CCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhc
Q 012257 126 ----------------GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189 (467)
Q Consensus 126 ----------------~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~ 189 (467)
...+|||.||..++++++|+.+|++|......+|... . ....||++|++.+.|..|+..|+
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~--g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-G--GMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-C--CcceEeecHHHHHHHHHHHHHhh
Confidence 0125999999999999999999999986655555432 2 34579999999999999999999
Q ss_pred CCcc
Q 012257 190 GMLL 193 (467)
Q Consensus 190 ~~~~ 193 (467)
|..+
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 8765
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=5e-17 Score=133.17 Aligned_cols=174 Identities=22% Similarity=0.397 Sum_probs=142.7
Q ss_pred cceeecCCCccCCHHHHHH----hhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccc
Q 012257 219 NNVYVKNLSETTTEDDLKK----IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (467)
Q Consensus 219 ~~l~v~nlp~~~~~~~l~~----~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~ 294 (467)
.+|||.||...+..++|+. +|++||.|.+|.... +.+.+|.|||.|.+.+.|..|+.+|+|..+.|+.+++.++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4899999999999999888 999999998887664 5567999999999999999999999999999999999999
Q ss_pred ccchHHHHHhhhhhhh------------------hhh--------------ccccCCCCceEEEecCCCCCCHHHHHHhh
Q 012257 295 QKKYEREMELKGKFEQ------------------SLK--------------ETADKFEGLNLYVKNLDDSISDDKLKELF 342 (467)
Q Consensus 295 ~~~~~~~~~~~~~~~~------------------~~~--------------~~~~~~~~~~l~V~nlp~~~~~~~l~~~F 342 (467)
+.+........+.... ... ......+...||+.|||..++.+.+..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 8664332221100000 000 01224566789999999999999999999
Q ss_pred ccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEec-ccceEEehhh
Q 012257 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQ 398 (467)
Q Consensus 343 ~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 398 (467)
.+|..-++++++... ++.|||+|.+...|..|...|+|..+- ...+.|.|++
T Consensus 168 ~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999998863 469999999999999999999999996 7788888874
No 57
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=1.3e-17 Score=147.94 Aligned_cols=244 Identities=25% Similarity=0.402 Sum_probs=182.4
Q ss_pred CCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccc
Q 012257 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204 (467)
Q Consensus 126 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~ 204 (467)
+.+++||++|+.+++++.|++.|..||+|.+|.++++ .++.+++|+||+|++++....++. ...+.+.|+.|....+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5679999999999999999999999999999999999 779999999999999999999986 35678999999998888
Q ss_pred cccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCc
Q 012257 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKK 283 (467)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 283 (467)
................++|++||..++++++++.|++||.|..+.++.+ ...+.+||+||.|.+.++...++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8777666666667789999999999999999999999999999988888 557899999999999998888876 67888
Q ss_pred cCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEe------eCC
Q 012257 284 FDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM------RDP 357 (467)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~------~~~ 357 (467)
+.++.+.+..+.++............ .....++....+--.|..+|.-||.+-...-- +-.
T Consensus 163 ~~gk~vevkrA~pk~~~~~~~~~~~~-------------~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 229 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQSTKSSVST-------------RGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYG 229 (311)
T ss_pred ecCceeeEeeccchhhcccccccccc-------------ccccccccccccccccchhccccCccccccccccccccccc
Confidence 99999999998876443221111000 01111333333333444555555444210000 000
Q ss_pred CCCccceEEEEcCCHHHHHHHHHHhCC
Q 012257 358 NGISRGSGFVAFSTAEEASKALTEMNG 384 (467)
Q Consensus 358 ~~~~~g~afV~f~~~~~A~~A~~~l~g 384 (467)
...+.+.+|..|........+...+++
T Consensus 230 ~~~~~g~g~~~~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 230 PLFNGGSGYPEFGNSGLGFGYGNKLNR 256 (311)
T ss_pred cccCCCccccccCccccccccccccCC
Confidence 012456888888877766665555444
No 58
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.73 E-value=3.9e-16 Score=135.87 Aligned_cols=260 Identities=19% Similarity=0.283 Sum_probs=198.0
Q ss_pred CccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhc--CCccCCeeeEecccc
Q 012257 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN--GMLLNDKQVFVGPFL 204 (467)
Q Consensus 127 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~--~~~~~g~~~~v~~~~ 204 (467)
+--|.|++|-..+++.+|.+.++.||.|..+..+. .++.|.|+|++.+.|..++.... ...+.|....+.++.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P-----~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP-----HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEecc-----ccceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 34689999999999999999999999998777664 56789999999999999997543 335778877777776
Q ss_pred ccccccccccccccccee---ecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 012257 205 RKQERESTADKTRFNNVY---VKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281 (467)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~---v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 281 (467)
.+...+........+.+. |-|--..++.+-|..++...|.|.+|.+... +.-.|+|+|++.+.|++|..+|||
T Consensus 106 sq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrAk~alNG 181 (494)
T KOG1456|consen 106 SQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRAKAALNG 181 (494)
T ss_pred hhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHHHHhhccc
Confidence 655554444433334333 3455567899999999999999999999875 334899999999999999999999
Q ss_pred CccCC--ceEEEcccccchHH-------HHH--------------------------------hhhhh----h-------
Q 012257 282 KKFDD--KEWYVGKAQKKYER-------EME--------------------------------LKGKF----E------- 309 (467)
Q Consensus 282 ~~~~~--~~l~~~~~~~~~~~-------~~~--------------------------------~~~~~----~------- 309 (467)
..+.. ..|++.++++...+ .+. +.+.. .
T Consensus 182 ADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~ 261 (494)
T KOG1456|consen 182 ADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPP 261 (494)
T ss_pred ccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCC
Confidence 98764 35666666532100 000 00000 0
Q ss_pred --------------hhhhccccCCCCceEEEecCC-CCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHH
Q 012257 310 --------------QSLKETADKFEGLNLYVKNLD-DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374 (467)
Q Consensus 310 --------------~~~~~~~~~~~~~~l~V~nlp-~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~ 374 (467)
..........+++.+.|.+|. ..++.+.|..+|..||.|++|++++.+. |.|.|++.|..+
T Consensus 262 ~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~a 337 (494)
T KOG1456|consen 262 HPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYA 337 (494)
T ss_pred CCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHH
Confidence 000001223456789999998 5679999999999999999999999865 489999999999
Q ss_pred HHHHHHHhCCcEecccceEEehhhh
Q 012257 375 ASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
.++|+..||+..+-|.+|.|.+++.
T Consensus 338 ver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 338 VERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred HHHHHHHhccCccccceEEEeeccc
Confidence 9999999999999999999988763
No 59
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=3.1e-17 Score=131.35 Aligned_cols=82 Identities=32% Similarity=0.558 Sum_probs=76.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
...++|||+|||..+++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 356689999999999999999999999999999999887 7889999999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=5.7e-16 Score=109.40 Aligned_cols=70 Identities=44% Similarity=0.797 Sum_probs=67.5
Q ss_pred EEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 324 l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
|||+|||..+++++|+++|++||.|..+++..+..+..+++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999885
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.3e-15 Score=125.48 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=79.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
++++|.|.||+.+++|++|+++|.+||.|..|.+.+|+.||.++|||||.|.+.+||++|++.|++.-++.--|+|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 012257 118 RD 119 (467)
Q Consensus 118 ~~ 119 (467)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 54
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=1.1e-15 Score=107.99 Aligned_cols=70 Identities=41% Similarity=0.788 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 42 l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
|||+|||+++++++|+++|+.||.|..+.+..+ .+++++++|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6788999999999999999999999999999999885
No 63
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.5e-15 Score=117.24 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=130.6
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
....|+|+|||.++.+.+|.++|-+||.|..|.+..... .-.||||+|++..+|..|+..-+|..++|..|.|.++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 347899999999999999999999999999999865432 245999999999999999999999999999999998865
Q ss_pred chHHHHHhhhhh--------hhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEE
Q 012257 297 KYEREMELKGKF--------EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368 (467)
Q Consensus 297 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~ 368 (467)
............ .....-....-....|.|.+||..-++++|+++..+-|.|....+.++ |.+.|+
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~ 156 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVE 156 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeee
Confidence 421110000000 000011122234457999999999999999999999999999998887 489999
Q ss_pred cCCHHHHHHHHHHhCCcEec
Q 012257 369 FSTAEEASKALTEMNGKMVV 388 (467)
Q Consensus 369 f~~~~~A~~A~~~l~g~~~~ 388 (467)
|...++-.-|+..|+...+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeehhhHHHHHHhhcccccc
Confidence 99999999999999988774
No 64
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.63 E-value=5.4e-15 Score=138.72 Aligned_cols=165 Identities=10% Similarity=0.028 Sum_probs=129.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.+.+.+-+.+.+.++++.+++++|... .|.++.|..+...+...|-++|.|....++++|++ .+...+-.+.+.+...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCC
Confidence 456778889999999999999999765 56677777776555557899999999999999997 5666677777777443
Q ss_pred ccCc-------------------------------------ccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEE-EE
Q 012257 117 YRDP-------------------------------------TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CK 158 (467)
Q Consensus 117 ~~~~-------------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-~~ 158 (467)
.... ........+|+|..||..+++.++.++|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 2110 011122357999999999999999999998878877 66
Q ss_pred EeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccc
Q 012257 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203 (467)
Q Consensus 159 ~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~ 203 (467)
+-..++++.++.|||.|.+++++..|...-+.+.+..+.|.|...
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 666688889999999999999999998766677777888887443
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=9.9e-16 Score=131.38 Aligned_cols=82 Identities=27% Similarity=0.471 Sum_probs=76.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....+.|+|+|||+...|-||+..|.+||.|.+|.|+.+..| +|||+||+|++.+||.+|.++|||..+.||+|.|..+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345568999999999999999999999999999999999877 6999999999999999999999999999999999987
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 644
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.4e-15 Score=111.90 Aligned_cols=85 Identities=27% Similarity=0.471 Sum_probs=80.4
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
..+.|++|||+||..-++||.|+++|+++|+|..|.+-.|+.+....|||||+|-+.+||..|++-++++.++.+.|++-
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecccC
Q 012257 115 YSYRD 119 (467)
Q Consensus 115 ~~~~~ 119 (467)
|....
T Consensus 112 ~D~GF 116 (153)
T KOG0121|consen 112 WDAGF 116 (153)
T ss_pred ccccc
Confidence 87543
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=124.74 Aligned_cols=79 Identities=32% Similarity=0.505 Sum_probs=72.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeeccc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 118 (467)
-++|||+||+|++..++|+++|++||+|++..|+.|+.+|+|+||+||+|++.++|.+|++.-+ -.|+||+..++.+..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 5899999999999999999999999999999999999999999999999999999999998543 358999998877654
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2e-15 Score=124.29 Aligned_cols=81 Identities=32% Similarity=0.569 Sum_probs=77.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
+..+|.|.||+.+++|++|+++|.+||.|.++.|.+++ +|.++|||||.|.++++|.+||+.|||+-++.=-|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 66689999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=5.9e-15 Score=103.90 Aligned_cols=70 Identities=29% Similarity=0.617 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 42 l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
|+|+|||+++++++|+++|+.||.|..+.+..++. +.++++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999888999999875
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=6.8e-15 Score=103.56 Aligned_cols=70 Identities=36% Similarity=0.710 Sum_probs=65.3
Q ss_pred EEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 324 l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
|+|+|||..+++++|+++|+.||.|..+++..++++.++++|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998888999999999999999999999999999999874
No 71
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.58 E-value=2.1e-13 Score=118.20 Aligned_cols=165 Identities=21% Similarity=0.354 Sum_probs=133.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
-++.|||+|||.++|.+++.++|++||.|. .|++.++.. |.-+|=|++.|-..++...|++.|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 367799999999999999999999999553 478888875 88999999999999999999999999999999
Q ss_pred eeeeeecccC------------------------------------cccccCCCccEEEcCC--CCc--CC-------HH
Q 012257 110 PIRIMYSYRD------------------------------------PTIRKSGAGNIFIKNL--DKS--ID-------NK 142 (467)
Q Consensus 110 ~~~v~~~~~~------------------------------------~~~~~~~~~~l~v~nl--p~~--~t-------~~ 142 (467)
.++|..+.-. ...+....++|.+.|+ |.. .+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999765210 0011223457888887 222 22 45
Q ss_pred HHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccc
Q 012257 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (467)
Q Consensus 143 ~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~ 206 (467)
+|++-.++||.|.++.+... .+.|.+-|.|.+.++|..|++.|+|+.+.|+.|.....-..
T Consensus 292 dl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 66777899999999988754 35678999999999999999999999999999988655443
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.9e-15 Score=115.24 Aligned_cols=78 Identities=28% Similarity=0.494 Sum_probs=72.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeeccc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 118 (467)
.++|||+||+..+++.||+..|..||+|.+|||-+.+. |||||+|+++.||++|+..|++..|+|..++|+.+..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 68999999999999999999999999999999987554 7999999999999999999999999999999998865
Q ss_pred Ccc
Q 012257 119 DPT 121 (467)
Q Consensus 119 ~~~ 121 (467)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 543
No 73
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.57 E-value=3.3e-14 Score=115.32 Aligned_cols=170 Identities=21% Similarity=0.336 Sum_probs=122.7
Q ss_pred ccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCC--CceeEEEEEeCCHHHHHHHHHHhCCCccCC---ceEE
Q 012257 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG--KSKCFGFVNFDDPDDAARSVEALNGKKFDD---KEWY 290 (467)
Q Consensus 216 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~~---~~l~ 290 (467)
...++|||.+||.++...+|..+|..|-.-+...+.....+ ..+.+||++|.+..+|..|++.|||..|+. ..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34589999999999999999999999877666666554222 245699999999999999999999999874 4666
Q ss_pred EcccccchHHHHHhhhh--------------hhhh------------------------------------------h--
Q 012257 291 VGKAQKKYEREMELKGK--------------FEQS------------------------------------------L-- 312 (467)
Q Consensus 291 ~~~~~~~~~~~~~~~~~--------------~~~~------------------------------------------~-- 312 (467)
+..++............ ..+. +
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 66654321110000000 0000 0
Q ss_pred ----------hccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHh
Q 012257 313 ----------KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (467)
Q Consensus 313 ----------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 382 (467)
........+.+|||.||..+++|++|+.+|+.|-....++|.. .+| ...||++|++.+.|..||..|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHHh
Confidence 0000111244799999999999999999999998777666643 333 459999999999999999999
Q ss_pred CCcEec
Q 012257 383 NGKMVV 388 (467)
Q Consensus 383 ~g~~~~ 388 (467)
+|..+.
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 999884
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.55 E-value=2e-13 Score=118.27 Aligned_cols=177 Identities=21% Similarity=0.309 Sum_probs=138.0
Q ss_pred ccceeecCCCccCCHHHHHHhhcccCCeeE--------EEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITS--------TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l 289 (467)
...|||+|||.++|.+++.++|+++|-|.. +++.++..|..+|-|.+.|...++...|+..|++..+.|+.+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 356999999999999999999999998765 788888899999999999999999999999999999999999
Q ss_pred EEcccccchHHHHHhhhh-----------hhh---------hhhccccCCCCceEEEecCC----CCCC-------HHHH
Q 012257 290 YVGKAQKKYEREMELKGK-----------FEQ---------SLKETADKFEGLNLYVKNLD----DSIS-------DDKL 338 (467)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~-----------~~~---------~~~~~~~~~~~~~l~V~nlp----~~~~-------~~~l 338 (467)
+|..|+-........... ... ........-..++|.+.|+- ...+ .++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 998886322111110000 000 00112223345689999983 2233 3677
Q ss_pred HHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 339 ~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
++-+++||.|.+|.|.-.. +.|.+-|.|.+.++|..||..|+|++|+|+.|..+..
T Consensus 294 ~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 7789999999999887542 4679999999999999999999999999999988764
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=9.8e-15 Score=121.35 Aligned_cols=148 Identities=23% Similarity=0.472 Sum_probs=126.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
.++||++||+.+.+.+|.++|..||.+.++.+.. ||+||+|.+..||..|+..+++..+.|-.+-+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999988742 58999999999999999999999999988888776631
Q ss_pred ------cc------------cccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHH
Q 012257 120 ------PT------------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181 (467)
Q Consensus 120 ------~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A 181 (467)
+. ........+.+.+++..+...+|...|..+|.+....+ ..+++||+|++.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 00 01223457999999999999999999999999954443 467899999999999
Q ss_pred HHHHHHhcCCccCCeeeEecc
Q 012257 182 KSAIDKLNGMLLNDKQVFVGP 202 (467)
Q Consensus 182 ~~a~~~l~~~~~~g~~~~v~~ 202 (467)
.+|+..|++..+.++.|.+..
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhcchhccchhhcCceeeecc
Confidence 999999999999999999843
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=5.4e-15 Score=122.87 Aligned_cols=165 Identities=29% Similarity=0.453 Sum_probs=130.8
Q ss_pred ceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchH
Q 012257 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299 (467)
Q Consensus 220 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~ 299 (467)
.+||+++++...+.++..+|..||.+.++.+. .||+||+|.+..+|..|+..+++..+.+..+.+.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 58999999999999999999999999999886 45999999999999999999999999999888877764211
Q ss_pred HHHHhh-hhhh-hhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHH
Q 012257 300 REMELK-GKFE-QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377 (467)
Q Consensus 300 ~~~~~~-~~~~-~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~ 377 (467)
...... +.-. .........-..+.+.|.++...+.+.+|.+.|+++|.+...... ++++||+|.+.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhh
Confidence 110000 0000 011111223355679999999999999999999999999655552 4599999999999999
Q ss_pred HHHHhCCcEecccceEEehhh
Q 012257 378 ALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 378 A~~~l~g~~~~g~~l~v~~~~ 398 (467)
|++.|+|..+.|+.|.+...-
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred cchhccchhhcCceeeecccC
Confidence 999999999999999995543
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.5e-14 Score=118.79 Aligned_cols=78 Identities=28% Similarity=0.467 Sum_probs=71.0
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
-.+|||+||++++..++|+++|++||+|+++.|+.|+ +|+++||+||+|.|.++|.+|++. -+-.|+||+-.|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 3479999999999999999999999999999999987 899999999999999999999984 45788999999988764
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=8.4e-15 Score=117.29 Aligned_cols=80 Identities=31% Similarity=0.476 Sum_probs=75.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
...+|.|.||.+.++.++|+.+|++||.|-+|.|+.+. ++.++|||||.|.+..+|+.|+++|+|..++|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 44579999999999999999999999999999999998 88899999999999999999999999999999999999987
Q ss_pred h
Q 012257 399 R 399 (467)
Q Consensus 399 ~ 399 (467)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.7e-14 Score=121.85 Aligned_cols=78 Identities=27% Similarity=0.466 Sum_probs=72.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeeccc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 118 (467)
.++|+|+|||....|.||+..|.+||.|++|.|+-.. ..||||+||+|++.+||++|.++|++..+.||.|.|+.+..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 5789999999999999999999999999999999864 35899999999999999999999999999999999987653
No 80
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.1e-14 Score=121.65 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=70.6
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
.++|||+||++.+++++|+++|+.||.|++|+|+.+.. .+|||||+|.+.++|..|+. |+|..|+|+.|+|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 46899999999999999999999999999999998753 46899999999999999995 9999999999999987643
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.6e-14 Score=112.82 Aligned_cols=77 Identities=27% Similarity=0.493 Sum_probs=71.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
..+.|||+||+..+++.||..+|..||.+.+|.|-.+ +.|||||+|++..||..|+..|+|..|+|..|+|+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4568999999999999999999999999999999886 457999999999999999999999999999999999864
Q ss_pred h
Q 012257 400 K 400 (467)
Q Consensus 400 ~ 400 (467)
.
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 4
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=1.9e-14 Score=115.24 Aligned_cols=84 Identities=29% Similarity=0.438 Sum_probs=79.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
..-...++|.|-||-+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..||++|++.|++..++|+.|+|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 33445899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 012257 114 MYSY 117 (467)
Q Consensus 114 ~~~~ 117 (467)
..+.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 7764
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=8.2e-14 Score=119.11 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=70.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeeccc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 118 (467)
.++|||+|||+.++|++|+++|+.||.|.+|.|.+++. ++|||||+|.+.++|+.|+. |++..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 68999999999999999999999999999999998864 45899999999999999996 999999999999998753
No 84
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=6.7e-14 Score=103.16 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=75.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
.+++|||+||.+.++|+.|.++|+++|.|+.|.+-.+. +..+-|||||+|-+.++|..|+.-++|..++.+.|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45689999999999999999999999999999887776 44567999999999999999999999999999999999987
Q ss_pred hhHHH
Q 012257 399 RKEER 403 (467)
Q Consensus 399 ~~~~~ 403 (467)
.-.+.
T Consensus 115 GF~eG 119 (153)
T KOG0121|consen 115 GFVEG 119 (153)
T ss_pred cchhh
Confidence 66543
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.8e-13 Score=116.25 Aligned_cols=86 Identities=22% Similarity=0.395 Sum_probs=79.2
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
....+...+=+||||+-|+++++|.+|+..|+.||+|+.|.|++|+.||+++|||||+|.+..+-..|.+..++..|+|+
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 34444556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeee
Q 012257 110 PIRIMY 115 (467)
Q Consensus 110 ~~~v~~ 115 (467)
.|-|-.
T Consensus 172 ri~VDv 177 (335)
T KOG0113|consen 172 RILVDV 177 (335)
T ss_pred EEEEEe
Confidence 998743
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.1e-13 Score=102.98 Aligned_cols=90 Identities=22% Similarity=0.379 Sum_probs=84.2
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
.++|.++-+.=.|||.++...++|++|.+.|..||+|++|.+-.|++||..+|||+|+|++.++|+.|+..+|+..+.|.
T Consensus 63 ~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 63 RPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred CCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 45566777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccC
Q 012257 110 PIRIMYSYRD 119 (467)
Q Consensus 110 ~~~v~~~~~~ 119 (467)
.+.|-|+...
T Consensus 143 ~v~VDw~Fv~ 152 (170)
T KOG0130|consen 143 NVSVDWCFVK 152 (170)
T ss_pred ceeEEEEEec
Confidence 9999998654
No 87
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=6.6e-13 Score=122.66 Aligned_cols=124 Identities=28% Similarity=0.563 Sum_probs=108.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc-
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY- 117 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~- 117 (467)
.++|||+|||.++++++|+++|..||.|..+.+..++.+++++|+|||.|.+.++|..|+..+++..|.|+.++|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999899999999999999999999999999999999999999853
Q ss_pred ---cCccc------------------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC
Q 012257 118 ---RDPTI------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD 162 (467)
Q Consensus 118 ---~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~ 162 (467)
..... .......+++.+++..++..++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 11111 1122356899999999999999999999999966665544
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=3.9e-13 Score=95.20 Aligned_cols=82 Identities=23% Similarity=0.468 Sum_probs=73.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
....++-|||+|||.+++.++.+++|.+||+|..|+|-..+.| +|.|||.|++..||.+|+..|++..+.++.+.|.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3455899999999999999999999999999999999876654 5899999999999999999999999999999998
Q ss_pred ecccC
Q 012257 115 YSYRD 119 (467)
Q Consensus 115 ~~~~~ 119 (467)
+....
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 76544
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.9e-13 Score=95.84 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=73.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
...+.|||.|||+.+|.++..++|.+||.|..++|-..+. .+|.|||.|++..+|.+|+..|+|..++++.|.|-|-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3456799999999999999999999999999999876543 47899999999999999999999999999999999877
Q ss_pred hhHH
Q 012257 399 RKEE 402 (467)
Q Consensus 399 ~~~~ 402 (467)
+...
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 6554
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=2.8e-13 Score=122.63 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=73.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCH--HHHHHHHHHhCCcEecccceEEeh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA--EEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..+.+|||+||.+.+++++|+.+|+.||.|.+|.|++. +| ||||||+|.+. .++.+||..|||..+.|+.|+|.-
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34568999999999999999999999999999999943 55 89999999987 789999999999999999999999
Q ss_pred hhhhHH
Q 012257 397 AQRKEE 402 (467)
Q Consensus 397 ~~~~~~ 402 (467)
|++.--
T Consensus 85 AKP~YL 90 (759)
T PLN03213 85 AKEHYL 90 (759)
T ss_pred ccHHHH
Confidence 986543
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=9.1e-15 Score=114.68 Aligned_cols=78 Identities=27% Similarity=0.523 Sum_probs=75.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
++.-|||+|||++.+|.+|.-.|++||+|.+|.+++|+.||+|+||||+-|++..+...|+..++++.|.||.|+|-.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999999943
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=3.9e-13 Score=95.28 Aligned_cols=72 Identities=43% Similarity=0.752 Sum_probs=67.6
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
+|+|+|||..+++++|+++|++||.|.++++..+. +.++|+|||+|.+.++|.+|+..++|..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999877 7788999999999999999999999999999998874
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.6e-13 Score=112.45 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=70.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
.+.+|+|+||++.+|+++|+++|+.||.|.+|+|+++ +..+++|||+|.+.++|..|+ .|+|..|.++.|.|.-...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4578999999999999999999999999999999988 445689999999999999999 5999999999999986543
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=6.6e-13 Score=94.09 Aligned_cols=71 Identities=34% Similarity=0.735 Sum_probs=66.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 41 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
+|+|+|||.++++++|+++|+.||.|..+.+..++ +.++|+|||+|.+.++|++|++.+++..+.|+.++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999876 678899999999999999999999999999988876
No 95
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.8e-13 Score=101.73 Aligned_cols=85 Identities=21% Similarity=0.457 Sum_probs=78.5
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 316 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
.....++.|||.++....+|++|.+.|..||+|+.+++..+. +|..+|||+|+|++.++|++|+..+||..+.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 345577889999999999999999999999999999998886 8999999999999999999999999999999999999
Q ss_pred ehhhhh
Q 012257 395 ALAQRK 400 (467)
Q Consensus 395 ~~~~~~ 400 (467)
.|+-.+
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 997543
No 96
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.8e-14 Score=113.00 Aligned_cols=77 Identities=21% Similarity=0.475 Sum_probs=73.3
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
+.-|||+|||+.+||.||..+|++||+|.+|.+++|. +|+++||||+.|++..+..-|+..|||..|.||.|+|...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3469999999999999999999999999999999998 8999999999999999999999999999999999999853
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.8e-14 Score=113.53 Aligned_cols=85 Identities=31% Similarity=0.500 Sum_probs=79.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
..++|||++|..+++|.-|...|-+||.|.+|.++.|. ++++||||||+|.-.+||..||..||+..+.||.|+|.||+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45689999999999999999999999999999999997 78899999999999999999999999999999999999998
Q ss_pred hhHHHH
Q 012257 399 RKEERR 404 (467)
Q Consensus 399 ~~~~~~ 404 (467)
+.+-..
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 776433
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1e-12 Score=110.39 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
...+|+|+||++.++|++|+++|+.||.|.+|.|.+|.. .+++|||+|.+.++|+.|+. |++..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 457999999999999999999999999999999998854 44799999999999999995 99999999999997654
No 99
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=8e-13 Score=119.71 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=71.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecCh--HHHHHHHHHhCCcccCCceeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA--HEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
....+||||||++++++++|+.+|..||.|.+|.|+++ +| +|||||+|.+. .++.+|++.|++..+.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34689999999999999999999999999999999954 55 79999999987 78999999999999999999998
Q ss_pred eccc
Q 012257 115 YSYR 118 (467)
Q Consensus 115 ~~~~ 118 (467)
.+..
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8755
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=9.1e-13 Score=115.54 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=124.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
.--.|.+++||+++++.++.++|-.- |-.+.|..++. ..|+..|-|||.|...++|+.|+.+ +...+..|.|.+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 34668899999999999999999633 23345544443 4788889999999999999999985 444555555655
Q ss_pred eecccCc-----------------------------ccccCCCccEEEcCCCCcCCHHHHHHHHhhcC-Ce--EEEEEee
Q 012257 114 MYSYRDP-----------------------------TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG-NI--LSCKVAT 161 (467)
Q Consensus 114 ~~~~~~~-----------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v--~~~~~~~ 161 (467)
-.+...+ ........+|.+++||+..+.++|..+|..|. .| ..+.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 3322100 00112256899999999999999999999886 33 3377888
Q ss_pred CCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecc
Q 012257 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202 (467)
Q Consensus 162 ~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~ 202 (467)
+..|...|-|||+|.+.+.|..|....+++....+.|.+-.
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 88899999999999999999999999888888888888743
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.1e-12 Score=92.54 Aligned_cols=70 Identities=36% Similarity=0.740 Sum_probs=66.3
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 44 v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
|+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|++.+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5899999999999999999999999999998888899999999999999999999999988999998876
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=8.7e-13 Score=87.85 Aligned_cols=56 Identities=39% Similarity=0.738 Sum_probs=51.3
Q ss_pred HHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 338 l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
|+++|++||+|+++.+..+. +++|||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998764 479999999999999999999999999999999985
No 103
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.2e-12 Score=111.23 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=76.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..+-++|||.-|+.+++|.+|+..|+.||.|+.|+|+.+. +|+++|||||+|++..+-..|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3466799999999999999999999999999999999996 999999999999999999999999999999999999998
Q ss_pred hh
Q 012257 397 AQ 398 (467)
Q Consensus 397 ~~ 398 (467)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 65
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.6e-12 Score=91.78 Aligned_cols=70 Identities=44% Similarity=0.764 Sum_probs=65.4
Q ss_pred EecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 326 V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
|+|||..+++++|+++|++||.|.++++..+. ++.++|+|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999877 47889999999999999999999999999999998874
No 105
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=3.3e-12 Score=90.98 Aligned_cols=74 Identities=41% Similarity=0.741 Sum_probs=69.7
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+.++++|||+|.+.++|..|++.+++..+.|+.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 38999999999999999999999999999999988777789999999999999999999999999999999875
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=5.3e-12 Score=89.89 Aligned_cols=74 Identities=38% Similarity=0.764 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 41 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
+|+|+|||+++++++|+++|+.+|.|..+.+..+..+ ..+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999987654 6678999999999999999999999999999998753
No 107
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.4e-12 Score=105.72 Aligned_cols=83 Identities=27% Similarity=0.519 Sum_probs=79.1
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
..|+|||++|-.+++|.-|...|=.||.|.+|.+..|..+++++||+||+|.-.|||..|+..+|...+.||.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCc
Q 012257 118 RDP 120 (467)
Q Consensus 118 ~~~ 120 (467)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 543
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.4e-14 Score=139.71 Aligned_cols=321 Identities=16% Similarity=0.145 Sum_probs=230.7
Q ss_pred CeEEEcCCCCCCCHHHHH-HHHhcCCCeEE-EEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 40 TSLYVGDLDLSVNDSQLY-DLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~-~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
++.+|-|-+...+...|. .+++-++-+.. +... .......+|+++..+.+++..++..+.......-++.+--..
T Consensus 480 ~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~---~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 480 KAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGP---SARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred hhhHhhhccccCCcchHHHHHHHHHhHHHHhCCch---hHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 455677777778888887 66665532111 1111 111244589999999999999998765544333232221111
Q ss_pred cCc-----ccccCCCccEEEcCCCCcCCHH-HHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcC
Q 012257 118 RDP-----TIRKSGAGNIFIKNLDKSIDNK-ALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (467)
Q Consensus 118 ~~~-----~~~~~~~~~l~v~nlp~~~t~~-~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~ 190 (467)
... ...........+.++.+...+. ..+..|..+|.|..+.+... ..-....++++.+.....++.|.. ..+
T Consensus 557 ~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~ 635 (881)
T KOG0128|consen 557 PEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAG 635 (881)
T ss_pred HHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccc
Confidence 100 0111223456677776665444 56788999999999988774 222233478899999999988886 466
Q ss_pred CccCCeeeEeccccccccccccccc----ccccceeecCCCccCCHHHHHHhhcccCCeeEEEEE-ECCCCCceeEEEEE
Q 012257 191 MLLNDKQVFVGPFLRKQERESTADK----TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM-RDADGKSKCFGFVN 265 (467)
Q Consensus 191 ~~~~g~~~~v~~~~~~~~~~~~~~~----~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~-~~~~~~~~g~afv~ 265 (467)
..+.++...+....+.......... ....++|++|++..+.++++...|..+|.+..+.+. ....++.+|+||+.
T Consensus 636 ~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~ 715 (881)
T KOG0128|consen 636 GALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVE 715 (881)
T ss_pred cccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeE
Confidence 6777777777666554433322222 223468999999999999999999999988877766 33567789999999
Q ss_pred eCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccC
Q 012257 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEF 345 (467)
Q Consensus 266 f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~ 345 (467)
|...+++.+|+....+..++ ...|+|.|.|+..|.++++.+++.+
T Consensus 716 F~~~~~~~aaV~f~d~~~~g-----------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~ 760 (881)
T KOG0128|consen 716 FLKPEHAGAAVAFRDSCFFG-----------------------------------KISVAISGPPFQGTKEELKSLASKT 760 (881)
T ss_pred eecCCchhhhhhhhhhhhhh-----------------------------------hhhhheeCCCCCCchHHHHhhcccc
Confidence 99999999999854433332 1159999999999999999999999
Q ss_pred CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 346 GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 346 G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
|++.+++++....|+++|.|+|.|.+..+|.++....+...+.-+.+.|..+.+
T Consensus 761 gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 761 GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999999999999999999999999999999888888888888887655
No 109
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=6.2e-12 Score=117.20 Aligned_cols=85 Identities=26% Similarity=0.468 Sum_probs=79.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
+.|||+|+|+++++++|.++|+..|.|.++++..|. +|+++||||++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 689999999999999999999999999999999997 8999999999999999999999999999999999999999766
Q ss_pred HHHHHH
Q 012257 401 EERRAR 406 (467)
Q Consensus 401 ~~~~~~ 406 (467)
..+...
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 554433
No 110
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=9e-12 Score=115.34 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=105.9
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
...+-+.++|+|-|||..+++++|+++|+.||+|..|+..+.+ +|.+||+|-|..+|+.|++.|+...+.|++++
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3445668999999999999999999999999999997765544 37999999999999999999999999999988
Q ss_pred eeecccCcc------------------cccCC--CccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEE
Q 012257 113 IMYSYRDPT------------------IRKSG--AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGF 172 (467)
Q Consensus 113 v~~~~~~~~------------------~~~~~--~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~af 172 (467)
-........ ....+ ...++ +.|++..+..-++..++.+|.+.. .. ++.-...-+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq~~ 217 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQRF 217 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cc----ccchhhhhh
Confidence 222111000 00011 11233 338887777666667777887754 21 111222566
Q ss_pred EEeCCHHHHHHHHHHhcCCccCCeeeEe
Q 012257 173 VQFDNEESAKSAIDKLNGMLLNDKQVFV 200 (467)
Q Consensus 173 V~f~~~~~A~~a~~~l~~~~~~g~~~~v 200 (467)
+.|.+..++..+.... |..+.+.....
T Consensus 218 ~~~~~~~s~a~~~~~~-G~~~s~~~~v~ 244 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRG-GFLISNSSGVI 244 (549)
T ss_pred hhhccccchhhcccCC-ceecCCCCceE
Confidence 7777777775555432 55555555333
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.31 E-value=7.2e-12 Score=116.80 Aligned_cols=80 Identities=29% Similarity=0.597 Sum_probs=77.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
+.|||||||++.+|++|.++|+..|.|.++++..|+.+|+.+||||++|.+.++|++|++.|++..+.|++|+|.|....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987543
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=7.8e-12 Score=87.26 Aligned_cols=61 Identities=23% Similarity=0.523 Sum_probs=54.1
Q ss_pred HHHHHHhhc----cCCceeEEE-EeeCC-C--CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 335 DDKLKELFS----EFGTITSCK-VMRDP-N--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 335 ~~~l~~~F~----~~G~v~~v~-i~~~~-~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
+++|+++|+ .||.|.++. +..+. + +.++|+|||+|.+.++|.+|++.|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999999995 55544 4 8899999999999999999999999999999999874
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.30 E-value=1.2e-11 Score=82.40 Aligned_cols=56 Identities=29% Similarity=0.778 Sum_probs=51.0
Q ss_pred HHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 56 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
|+++|++||+|.+|.+.+++ +++|||+|.+.++|++|++.|++..+.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998776 369999999999999999999999999999999875
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2.1e-11 Score=85.06 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=55.2
Q ss_pred HHHHHHHHh----cCCCeEEEE-EEecCCC--CccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 53 DSQLYDLFN----QMGQVVSVR-VCRDLST--RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 53 e~~l~~~f~----~~G~v~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
+++|+++|+ .||.|.+|. +..++.+ +.++|+|||+|.+.++|.+|++.|++..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999995 7666666 889999999999999999999999999999999876
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=3.3e-10 Score=104.26 Aligned_cols=151 Identities=21% Similarity=0.311 Sum_probs=115.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC--cccc---EEEEEecChHHHHHHHHHhCC----c---
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLG---YGYVNYNAAHEATRALDELNF----T--- 104 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~--~~~g---~afV~f~~~~~A~~A~~~l~~----~--- 104 (467)
+-+++|||++||++++|++|...|..||.+.-=+-.+....+ ..+| |+|+.|++....+..+..+.. .
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 448999999999999999999999999986544432222222 2456 999999999999988887632 1
Q ss_pred ----ccCCceeeeeeccc-------CcccccCCCccEEEcCCCCcCCHHHHHHHHh-hcCCeEEEEEeeC-CCCCceeEE
Q 012257 105 ----PLNGKPIRIMYSYR-------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFS-TFGNILSCKVATD-SLGQSRGYG 171 (467)
Q Consensus 105 ----~~~g~~~~v~~~~~-------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~g~v~~~~~~~~-~~g~~~~~a 171 (467)
.+..+.++|..... .....-+..++|||++||..++-++|..+|. -||.|..+-|-.| .-+..+|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 12333344433211 1233345567999999999999999999999 8999999988888 678899999
Q ss_pred EEEeCCHHHHHHHHHH
Q 012257 172 FVQFDNEESAKSAIDK 187 (467)
Q Consensus 172 fV~f~~~~~A~~a~~~ 187 (467)
-|.|.+...-.+||..
T Consensus 417 RVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISA 432 (520)
T ss_pred eeeecccHHHHHHHhh
Confidence 9999999999999973
No 116
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=107.68 Aligned_cols=169 Identities=29% Similarity=0.439 Sum_probs=124.8
Q ss_pred ccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
..+|||+||+..+++++|.++|..||.+..+.+..+ .++..+|+|||+|.+.+++..|+..+++..+.|+.+.+.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999998 4799999999999999999999999999999999999999652
Q ss_pred ----chHHHH--HhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCC-ccceEEEEc
Q 012257 297 ----KYEREM--ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAF 369 (467)
Q Consensus 297 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~-~~g~afV~f 369 (467)
...... .....................+++.+++..++..++...|..+|.+....+.....+. .....++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 0000001111222334456689999999999999999999999999777766654332 333444555
Q ss_pred CCHHHHHHHHHHhCCcE
Q 012257 370 STAEEASKALTEMNGKM 386 (467)
Q Consensus 370 ~~~~~A~~A~~~l~g~~ 386 (467)
.....+...........
T Consensus 275 ~~~~~~~~~~~~~~~~~ 291 (306)
T COG0724 275 EASKDALESNSRGNKKK 291 (306)
T ss_pred hHHHhhhhhhcccccee
Confidence 55555555544433333
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=1.2e-10 Score=111.68 Aligned_cols=80 Identities=28% Similarity=0.455 Sum_probs=73.5
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..+.+++|||++|+..+++.||..+|+.||.|.+|.++.. +|||||.+..+.+|.+|+.+|++..+.++.|+|.|
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 3456789999999999999999999999999999999875 88999999999999999999999999999999999
Q ss_pred hhhhH
Q 012257 397 AQRKE 401 (467)
Q Consensus 397 ~~~~~ 401 (467)
+..+.
T Consensus 492 a~g~G 496 (894)
T KOG0132|consen 492 AVGKG 496 (894)
T ss_pred eccCC
Confidence 86443
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=4.8e-12 Score=122.54 Aligned_cols=233 Identities=17% Similarity=0.140 Sum_probs=184.3
Q ss_pred CccCeEEEcCCCCCCCHH-HHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 37 FVSTSLYVGDLDLSVNDS-QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~-~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
...+...+.++-+..... ..++.|..+|.|+.|.+......-....+.++.+....+++.|.. ..+..+.++...+..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 345677888887776665 568899999999999987633222232388999999999999987 566677788877766
Q ss_pred cccCccccc--------CCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEe-eCCCCCceeEEEEEeCCHHHHHHHHH
Q 012257 116 SYRDPTIRK--------SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA-TDSLGQSRGYGFVQFDNEESAKSAID 186 (467)
Q Consensus 116 ~~~~~~~~~--------~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~-~~~~g~~~~~afV~f~~~~~A~~a~~ 186 (467)
+...+.... ....++|+.||+..+.+.+|...|..+|.+..+.+. ....+..+|+||+.|..++++.+|+.
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 654432211 123479999999999999999999999988777666 33677889999999999999999998
Q ss_pred HhcCCccCCeeeEecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEe
Q 012257 187 KLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266 (467)
Q Consensus 187 ~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f 266 (467)
..+++.+. ...++|.|.|...|.++++.++..+|.+.+..++..+.|+.+|.++|.|
T Consensus 728 f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y 784 (881)
T KOG0128|consen 728 FRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDY 784 (881)
T ss_pred hhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccC
Confidence 65554443 1458899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCccCCceEEEcc
Q 012257 267 DDPDDAARSVEALNGKKFDDKEWYVGK 293 (467)
Q Consensus 267 ~~~~~a~~a~~~l~~~~~~~~~l~~~~ 293 (467)
.+..++..++...+...+.-..+.+..
T Consensus 785 ~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 785 NTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred CCcchhhhhcccchhhhhhhcCccccc
Confidence 999999998877766666555555444
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.9e-10 Score=100.17 Aligned_cols=87 Identities=29% Similarity=0.463 Sum_probs=80.9
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 316 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
...++...|||..|.+.+++++|.-+|+.||.|.+|.++++. +|-+-.||||+|++.+++.+|.-.|++..|.+++|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 445677899999999999999999999999999999999997 8888999999999999999999999999999999999
Q ss_pred ehhhhhHH
Q 012257 395 ALAQRKEE 402 (467)
Q Consensus 395 ~~~~~~~~ 402 (467)
.|++....
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99986654
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.9e-11 Score=98.20 Aligned_cols=147 Identities=24% Similarity=0.326 Sum_probs=121.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
....++|||.|+-..++|+-|.++|=..|+|..|.|..++ .+..+ ||||.|.+.-+..-|++.+|+..+.+..+++.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3457999999999999999999999999999999998776 45555 999999999999999999999999999998854
Q ss_pred cccCcccccCCCccEEEcC----CCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCC
Q 012257 116 SYRDPTIRKSGAGNIFIKN----LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM 191 (467)
Q Consensus 116 ~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~ 191 (467)
+-++ |...++++.+.+.|+..|.+..+++..+.+|..+.++++.+--.-..-.++...++.
T Consensus 84 ---------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 84 ---------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ---------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 3333 555678888899999999999999999988889999999887766666667665555
Q ss_pred ccCCeeeE
Q 012257 192 LLNDKQVF 199 (467)
Q Consensus 192 ~~~g~~~~ 199 (467)
...-+++.
T Consensus 149 ~~~~~~~~ 156 (267)
T KOG4454|consen 149 ELFQKKVT 156 (267)
T ss_pred CcCCCCcc
Confidence 44444433
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.05 E-value=7.4e-10 Score=89.74 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=76.0
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
.........++|..+|...-|.+|..+|.++ |.|..+++-+.+.||.|+|||||+|++.+.|.-|.+.||+..+.|+.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3344456789999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred eeeec
Q 012257 112 RIMYS 116 (467)
Q Consensus 112 ~v~~~ 116 (467)
.+.+-
T Consensus 123 ~c~vm 127 (214)
T KOG4208|consen 123 ECHVM 127 (214)
T ss_pred eeEEe
Confidence 88654
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.05 E-value=4.5e-10 Score=90.99 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=74.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccC-CceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEF-GTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~-G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|..+|.-+.+.+|..+|.+| |.|..+++.++. +|.++|||||+|++.+.|.-|-+.||+..|+++-|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34469999999999999999999999 788888886766 9999999999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 777
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.04 E-value=4.8e-10 Score=107.64 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=70.3
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
-||||||++|+..++|++|.++|+.||.|.+|+++..+ |||||.+.+.+||.+|+.+|+...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 37899999999999999999999999999999997654 699999999999999999999999999999999985
Q ss_pred cC
Q 012257 118 RD 119 (467)
Q Consensus 118 ~~ 119 (467)
.+
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 43
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.04 E-value=4.7e-09 Score=99.60 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=64.5
Q ss_pred ceeecCCCccCCHHHHHHhhcccCCeeE-EEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEc
Q 012257 220 NVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292 (467)
Q Consensus 220 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~ 292 (467)
.|-+.|+|.+++.+||.++|..|-.+.. |.+....+|..+|-|.|-|++.++|..|...+++..+..+.+++.
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 4788999999999999999999976554 556666889999999999999999999999999999998887764
No 125
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=7.4e-11 Score=95.87 Aligned_cols=138 Identities=24% Similarity=0.377 Sum_probs=121.3
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
..++|+|.|+...++++-|.++|-+.|.|..+.|...++++.+ ||||.|.++.....|+.-+||..+.+..+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~----- 81 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR----- 81 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc-----
Confidence 3478999999999999999999999999999999888888777 9999999999999999999999998887776
Q ss_pred chHHHHHhhhhhhhhhhccccCCCCceEEEec----CCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCH
Q 012257 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKN----LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----lp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~ 372 (467)
+++-++ |...++++.+...|+.-|.++.+++..+.+|+++.++|+.+--.
T Consensus 82 --------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 82 --------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred --------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 355555 67788999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhCCcE
Q 012257 373 EEASKALTEMNGKM 386 (467)
Q Consensus 373 ~~A~~A~~~l~g~~ 386 (467)
.+.-.++....+..
T Consensus 136 ~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 136 CAVPFALDLYQGLE 149 (267)
T ss_pred hcCcHHhhhhcccC
Confidence 77777777665553
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.1e-10 Score=97.54 Aligned_cols=88 Identities=22% Similarity=0.352 Sum_probs=81.2
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
-+++.-.++...|||..|.+-++.++|.-+|++||.|.++.|++|+.||-+.-||||+|++.+++++|.=+|++..|+.+
T Consensus 230 lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 34455556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecc
Q 012257 110 PIRIMYSY 117 (467)
Q Consensus 110 ~~~v~~~~ 117 (467)
+|+|-++.
T Consensus 310 RIHVDFSQ 317 (479)
T KOG0415|consen 310 RIHVDFSQ 317 (479)
T ss_pred eEEeehhh
Confidence 99998764
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.5e-09 Score=94.81 Aligned_cols=82 Identities=23% Similarity=0.417 Sum_probs=72.4
Q ss_pred CCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh-CCcccCCc
Q 012257 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGK 109 (467)
Q Consensus 31 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~ 109 (467)
-.+......++|||++|-..++|.+|+++|-+||+|.+|.+...+ ++|||+|.+.+.|++|..+. +...|.|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 345566678999999999999999999999999999999998765 49999999999999998874 56678999
Q ss_pred eeeeeeccc
Q 012257 110 PIRIMYSYR 118 (467)
Q Consensus 110 ~~~v~~~~~ 118 (467)
+|.|.|...
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999876
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.6e-09 Score=94.57 Aligned_cols=78 Identities=23% Similarity=0.435 Sum_probs=68.6
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC-CcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN-GKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 395 (467)
.+....+|||++|...++|.+|+++|.+||+|+++++... +++|||+|.++++|+.|.+++- ...|.|.+|.|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3345568999999999999999999999999999999886 5699999999999999988654 446689999999
Q ss_pred hhhh
Q 012257 396 LAQR 399 (467)
Q Consensus 396 ~~~~ 399 (467)
|.++
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9988
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.94 E-value=2.8e-09 Score=88.96 Aligned_cols=163 Identities=20% Similarity=0.329 Sum_probs=126.7
Q ss_pred CeEEEcCCCCCCCHHH-H--HHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee-
Q 012257 40 TSLYVGDLDLSVNDSQ-L--YDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY- 115 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~-l--~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~- 115 (467)
-.++++++-.++..+- | ...|+.+=.+..-+++++. .+.-++++|+.|.....-.++-..-++..+....+++..
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4456666666555543 3 6677766555555555553 455668999999988888888876667777667677743
Q ss_pred ---cccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCC
Q 012257 116 ---SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGM 191 (467)
Q Consensus 116 ---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~ 191 (467)
...+...-+.+..+||.+.|-.+++++-|...|.+|-.....+++++ .+|+++||+||.|.+..++..|++.++|.
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 33333444566789999999999999999999999998888888888 89999999999999999999999999999
Q ss_pred ccCCeeeEeccc
Q 012257 192 LLNDKQVFVGPF 203 (467)
Q Consensus 192 ~~~g~~~~v~~~ 203 (467)
.++.+.|.+...
T Consensus 256 yVgsrpiklRkS 267 (290)
T KOG0226|consen 256 YVGSRPIKLRKS 267 (290)
T ss_pred ccccchhHhhhh
Confidence 999998887543
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=2.5e-09 Score=104.60 Aligned_cols=157 Identities=18% Similarity=0.265 Sum_probs=132.7
Q ss_pred cceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccch
Q 012257 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (467)
Q Consensus 219 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~ 298 (467)
++|+++|+...+++.+|+..|..+|.|.++.+....-+...-|+|+.|.+...+..|...+.+..+....+...+...
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~-- 450 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP-- 450 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc--
Confidence 579999999999999999999999999999998775566666999999999988888888888887766655554432
Q ss_pred HHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHH
Q 012257 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378 (467)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A 378 (467)
.....+.+++++|..++....|...|..||.|..|.+-.. .-||+|.|.+...|+.|
T Consensus 451 ------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 451 ------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAA 507 (975)
T ss_pred ------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhh
Confidence 1124456999999999999999999999999988776543 23999999999999999
Q ss_pred HHHhCCcEecc--cceEEehhhhh
Q 012257 379 LTEMNGKMVVS--KPLYVALAQRK 400 (467)
Q Consensus 379 ~~~l~g~~~~g--~~l~v~~~~~~ 400 (467)
++.|.|..|+| +.++|.|+.+.
T Consensus 508 ~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HHHHhcCcCCCCCcccccccccCC
Confidence 99999999985 67999998755
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=1.4e-09 Score=106.19 Aligned_cols=156 Identities=18% Similarity=0.279 Sum_probs=130.3
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
..+.+++||++||+..+++.+|+..|..+|.|.+|.|..-+ -++-.-||||.|.+...+-.|...+.+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34568999999999999999999999999999999987653 23444599999999999999998888888876677776
Q ss_pred ecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccC
Q 012257 115 YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (467)
Q Consensus 115 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~ 194 (467)
.... .....+.+|+++|...+....|...|..||.|..|.+-. ...||||.|.+...++.|++.+.|..+.
T Consensus 447 lG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 447 LGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred cccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCC
Confidence 5543 233457899999999999999999999999998877654 4679999999999999999999998886
Q ss_pred C--eeeEe
Q 012257 195 D--KQVFV 200 (467)
Q Consensus 195 g--~~~~v 200 (467)
+ +.+.+
T Consensus 518 ~P~~r~rv 525 (975)
T KOG0112|consen 518 GPPRRLRV 525 (975)
T ss_pred CCCccccc
Confidence 5 34444
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.86 E-value=1.6e-08 Score=93.93 Aligned_cols=83 Identities=25% Similarity=0.466 Sum_probs=76.2
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
+--.+.|||++|...+--.+|+.+|++||.|...+|+....+-.-++|+||++.+.++|.+||+.|+.+.+.|+-|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34468899999999999999999999999999999999888877788999999999999999999999999999999987
Q ss_pred ccc
Q 012257 116 SYR 118 (467)
Q Consensus 116 ~~~ 118 (467)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 654
No 133
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=4.3e-08 Score=90.58 Aligned_cols=151 Identities=21% Similarity=0.359 Sum_probs=108.8
Q ss_pred CccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEe----eCCCCCcee---EEEEEeCCHHHHHHHHHHhcC---C-c---
Q 012257 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA----TDSLGQSRG---YGFVQFDNEESAKSAIDKLNG---M-L--- 192 (467)
Q Consensus 127 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~----~~~~g~~~~---~afV~f~~~~~A~~a~~~l~~---~-~--- 192 (467)
+++|||++||.++++++|...|..||.+. +.-. ....-..+| |+|+-|+++..+..-+..+.- . .
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 56899999999999999999999999874 2222 111112455 999999999998888876532 0 0
Q ss_pred ----cCCeeeEeccccccc---ccccccccccccceeecCCCccCCHHHHHHhhc-ccCCeeEEEEEEC-CCCCceeEEE
Q 012257 193 ----LNDKQVFVGPFLRKQ---ERESTADKTRFNNVYVKNLSETTTEDDLKKIFG-EFGIITSTAVMRD-ADGKSKCFGF 263 (467)
Q Consensus 193 ----~~g~~~~v~~~~~~~---~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~g~v~~~~~~~~-~~~~~~g~af 263 (467)
+..+.+.+....... .......-...+++||++||..++.++|..+|+ .||.|..+.|-.+ +-+-.+|-|-
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 112222221111110 011222334558999999999999999999997 7999999999888 4566889999
Q ss_pred EEeCCHHHHHHHHHH
Q 012257 264 VNFDDPDDAARSVEA 278 (467)
Q Consensus 264 v~f~~~~~a~~a~~~ 278 (467)
|+|.+..+-.+|+.+
T Consensus 418 VtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISA 432 (520)
T ss_pred eeecccHHHHHHHhh
Confidence 999999999999874
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.81 E-value=2.1e-08 Score=93.31 Aligned_cols=79 Identities=14% Similarity=0.307 Sum_probs=68.6
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
...+|||+|||.++++.+|+++|+.||+|+...|......++..+||||+|.+.++++.|+.. +...+.++++.|+.-.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345599999999999999999999999999999988765555558999999999999999985 5778899999997543
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.78 E-value=1.7e-08 Score=86.55 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=75.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhH
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
..|.|.|||..++++||+++|..||.++.+-+..++.|.+.|.|-|.|...++|.+|++.+||..++|+.|.+....+..
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998765443
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=1.2e-08 Score=94.65 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=74.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
...+++|||.+|...+...+|+.+|++||+|+-.+++.+. +.-.++|+||++.+.++|.++|+.||...|.|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3456789999999999999999999999999999999886 333589999999999999999999999999999999998
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 7643
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=1.5e-08 Score=84.65 Aligned_cols=153 Identities=22% Similarity=0.327 Sum_probs=125.3
Q ss_pred HHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccccccccccccccccceeec
Q 012257 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVK 224 (467)
Q Consensus 145 ~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~ 224 (467)
...|+.+..+...+++++..+.-.+++|+.|...+.-.++...-++..+.-..++..............-.....+||++
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcg 196 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCG 196 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecc
Confidence 45667777777778888877788899999999988888888766777777776776555555444444445566789999
Q ss_pred CCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccc
Q 012257 225 NLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297 (467)
Q Consensus 225 nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~ 297 (467)
.|..+++++-+...|.+|-.-...+++++ .+++++||+||.|.+..++..|+..++|..++.+.+..+....+
T Consensus 197 dlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 197 DLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred cccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 99999999999999999998888888888 67999999999999999999999999999999998877655443
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.73 E-value=1.1e-07 Score=69.30 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=70.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhccC--CceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEec----ccceEE
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVV----SKPLYV 394 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~--G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 394 (467)
++|.|+|||...+.++|.+++... |...-+.++.|. ++.+.|||||.|.+.++|.+-.+.++|..+. .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998543 788888998886 6678999999999999999999999999885 578899
Q ss_pred ehhhhhHH
Q 012257 395 ALAQRKEE 402 (467)
Q Consensus 395 ~~~~~~~~ 402 (467)
.||+-+..
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99986543
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.71 E-value=5e-08 Score=83.68 Aligned_cols=78 Identities=35% Similarity=0.515 Sum_probs=72.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
+++|+|.|||+.+.+++|.++|..||.++.+.+-.+. .|++.|.|-|.|...+||..|++.+++..++|+.+++....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 4789999999999999999999999998888887775 78999999999999999999999999999999999887654
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.70 E-value=2.3e-08 Score=89.38 Aligned_cols=168 Identities=22% Similarity=0.305 Sum_probs=134.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
...+++|++++-..+.++++..++..+|.+.............++|++++.|+..+.+..|+.......+.++.+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999997777777766667789999999999999999999854433445544433222
Q ss_pred ccCc--------ccccCCCccEE-EcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHH
Q 012257 117 YRDP--------TIRKSGAGNIF-IKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186 (467)
Q Consensus 117 ~~~~--------~~~~~~~~~l~-v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~ 186 (467)
+... ........+++ |.+++..+++++|+.+|..+|.|..+++..+ .++..+++|||.|.+...+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2111 11223344566 9999999999999999999999999999888 788899999999999999999998
Q ss_pred HhcCCccCCeeeEeccccc
Q 012257 187 KLNGMLLNDKQVFVGPFLR 205 (467)
Q Consensus 187 ~l~~~~~~g~~~~v~~~~~ 205 (467)
. +...+.++.+.+.....
T Consensus 246 ~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred c-ccCcccCcccccccCCC
Confidence 7 78888898888855433
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.69 E-value=7.9e-08 Score=91.77 Aligned_cols=82 Identities=28% Similarity=0.443 Sum_probs=72.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
...++.|||+||++.++|+.|...|-+||+|.+|+|+.-+.. .+.+.|+||.|-+..||++|++.|+++.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 456889999999999999999999999999999999853322 23456999999999999999999999999999999
Q ss_pred eeecc
Q 012257 113 IMYSY 117 (467)
Q Consensus 113 v~~~~ 117 (467)
+.|..
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99984
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.64 E-value=6.3e-08 Score=90.19 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=69.1
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
..+|||.|||.++++++|+++|..||.|+..+|.... .++..+||||+|.+.+++..|+.+ +-..+++++|.|+-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 3459999999999999999999999999998887755 444449999999999999999986 46778999999998776
Q ss_pred hHH
Q 012257 400 KEE 402 (467)
Q Consensus 400 ~~~ 402 (467)
...
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 443
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=2.1e-08 Score=93.45 Aligned_cols=72 Identities=29% Similarity=0.467 Sum_probs=65.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
+....+|+|-|||..+++++|+++|+.||+|+.|+.-+. .+|.+||+|-|..+|.+|+++|++..+.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445668999999999999999999999999999776555 456999999999999999999999999999988
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.63 E-value=2.9e-07 Score=67.16 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=65.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccC----Cceee
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN----GKPIR 112 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~----g~~~~ 112 (467)
.+||.|+|||-..+.++|.+++... |..--+.+.-|-.++.+.|||||.|.+.++|.+..+..++..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3799999999999999999888654 67777788888889999999999999999999999998887663 34445
Q ss_pred eeec
Q 012257 113 IMYS 116 (467)
Q Consensus 113 v~~~ 116 (467)
|.++
T Consensus 81 i~yA 84 (97)
T PF04059_consen 81 ISYA 84 (97)
T ss_pred Eehh
Confidence 5544
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.60 E-value=6.6e-08 Score=83.42 Aligned_cols=83 Identities=20% Similarity=0.359 Sum_probs=76.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
-...+.+.+||+|+...++.+++..+|+.||.|..|.+..|+.++.++|||||+|.+.+.+.+|+. |++..|.|+.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445668999999999999999999999999999999999999999999999999999999999998 9999999999988
Q ss_pred eecc
Q 012257 114 MYSY 117 (467)
Q Consensus 114 ~~~~ 117 (467)
.+-.
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 6643
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.60 E-value=4.7e-08 Score=87.42 Aligned_cols=175 Identities=22% Similarity=0.244 Sum_probs=131.8
Q ss_pred ccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
..+++++++...+.+.+...++..+|......+... ....+++++++.|...+.+..++.........+..+.......
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 467899999988888888888888887777666653 5577899999999999999999985444455444444333322
Q ss_pred chHHHHHhhhhhhhhhhccccCCCCceEE-EecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHH
Q 012257 297 KYEREMELKGKFEQSLKETADKFEGLNLY-VKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~ 374 (467)
.... ..............+++ |.++++.+++++|+.+|..+|.|..+++..+. .+..+|+|+|.|.+...
T Consensus 168 ~~~~--------~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~ 239 (285)
T KOG4210|consen 168 RGLR--------PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNS 239 (285)
T ss_pred cccc--------ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchh
Confidence 2100 00000011112233455 99999999999999999999999999998887 78899999999999999
Q ss_pred HHHHHHHhCCcEecccceEEehhhhhH
Q 012257 375 ASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
+..++.. ....+.++++.+.+..+..
T Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 240 KKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred HHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999987 8889999999999987653
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.59 E-value=2.4e-07 Score=63.76 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=48.9
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 40 TSLYVGDLDLSVNDSQL----YDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l----~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
+.|+|.|||.+.+-..| ++++..|| .|.+|. + +.|+|.|.+.+.|.+|.+.|++....|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 57999999999998765 45666786 888772 1 479999999999999999999999999999999
Q ss_pred ecccCccc
Q 012257 115 YSYRDPTI 122 (467)
Q Consensus 115 ~~~~~~~~ 122 (467)
+.......
T Consensus 73 ~~~~~r~~ 80 (90)
T PF11608_consen 73 FSPKNREF 80 (90)
T ss_dssp SS--S---
T ss_pred EcCCcccc
Confidence 88654433
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.56 E-value=2.3e-07 Score=88.67 Aligned_cols=83 Identities=31% Similarity=0.511 Sum_probs=74.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC----CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP----NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
++..++|||+||++.++++.|...|..||.|.+++|+-.. ..+.+.|+||-|-++.+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567789999999999999999999999999999987654 234567999999999999999999999999999999
Q ss_pred Eehhhhh
Q 012257 394 VALAQRK 400 (467)
Q Consensus 394 v~~~~~~ 400 (467)
+-|++..
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998754
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.44 E-value=3.4e-07 Score=79.01 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=75.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..+.+.+||+|+.+.++.+++...|+.||.|..+.++.+. .|.++||+||+|.+.+.+.+|+. |+|..|.|+.+.|++
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456689999999999999999999999999999999998 45789999999999999999998 999999999999998
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8755
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.44 E-value=2.1e-08 Score=88.88 Aligned_cols=212 Identities=16% Similarity=0.176 Sum_probs=126.3
Q ss_pred ccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCC----CCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccc
Q 012257 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL----GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203 (467)
Q Consensus 128 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~----g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~ 203 (467)
+-|.|.||.+.++.++++.+|...|.|.++.++...+ ......|||.|.+...+..|-. |.++.+-++.+.|.++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4688999999999999999999999999999987522 2345789999999998888875 7777777777777443
Q ss_pred ccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCc
Q 012257 204 LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK 283 (467)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 283 (467)
... +-++.. .|..++.-..+--....+ |..
T Consensus 87 ~~~-----------------------~~p~r~--af~~l~~~navprll~pd-------------------------g~L 116 (479)
T KOG4676|consen 87 GDE-----------------------VIPDRF--AFVELADQNAVPRLLPPD-------------------------GVL 116 (479)
T ss_pred CCC-----------------------CCccHH--HHHhcCcccccccccCCC-------------------------Ccc
Confidence 222 111111 232222211111111111 111
Q ss_pred cCCceEEEcc-cccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCcc
Q 012257 284 FDDKEWYVGK-AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362 (467)
Q Consensus 284 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~ 362 (467)
+....+...- ..........+....... .... -.++++|++|+..+...++.+.|..+|+|...++--... .
T Consensus 117 p~~~~lt~~nh~p~ailktP~Lp~~~~A~---klee-irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~---s 189 (479)
T KOG4676|consen 117 PGDRPLTKINHSPNAILKTPELPPQAAAK---KLEE-IRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR---S 189 (479)
T ss_pred CCCCccccccCCccceecCCCCChHhhhh---hhHH-HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC---C
Confidence 1111110000 000000000000000000 0000 124799999999999999999999999999888765433 3
Q ss_pred ceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 363 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
-+|-|+|....+...|+. .+|..+.-........+
T Consensus 190 ~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 190 SSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIK 224 (479)
T ss_pred cchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcC
Confidence 377799998888888876 57777764444444433
No 151
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.43 E-value=1.3e-06 Score=76.53 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=65.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCC--ceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccc-eEEehh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP-LYVALA 397 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G--~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~~ 397 (467)
.++||+||-+++|++||.+....-| .+.+++++.+. +|+++|||+|...+..+..+.++.|--+.|.|.. ..++|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4799999999999999999887766 45667777665 8999999999999999999999999999998865 555555
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+..
T Consensus 161 K~~ 163 (498)
T KOG4849|consen 161 KTN 163 (498)
T ss_pred hhh
Confidence 543
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.38 E-value=1.2e-06 Score=60.42 Aligned_cols=69 Identities=26% Similarity=0.432 Sum_probs=47.9
Q ss_pred eEEEecCCCCCCHHH----HHHhhccCC-ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 323 NLYVKNLDDSISDDK----LKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~----l~~~F~~~G-~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
.|+|.|||.+.+... |++++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 599999999888754 556666774 677662 258999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 543
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.34 E-value=8.8e-08 Score=85.85 Aligned_cols=154 Identities=23% Similarity=0.350 Sum_probs=121.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc-ccCCceeeeeeccc
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT-PLNGKPIRIMYSYR 118 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~~~v~~~~~ 118 (467)
.++|++||.+.++..+|..+|.....-.+-.++.+ .|||||++.+..-|.+|++.+++. .+.|+++.+..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 57999999999999999999976521111122222 169999999999999999999875 68999999987765
Q ss_pred CcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 012257 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (467)
Q Consensus 119 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~ 198 (467)
+... ++++-|+|+|+..-.+.|..++..||.+..|......+ ..-..-|+|.+.+.+..|+..++|..+.+..+
T Consensus 76 kkqr----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 76 KKQR----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHL 149 (584)
T ss_pred HHHH----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhh
Confidence 4332 45699999999999999999999999999887754321 12223468899999999999999999988888
Q ss_pred Eeccccc
Q 012257 199 FVGPFLR 205 (467)
Q Consensus 199 ~v~~~~~ 205 (467)
.+.+...
T Consensus 150 k~~YiPd 156 (584)
T KOG2193|consen 150 KVGYIPD 156 (584)
T ss_pred hcccCch
Confidence 8866543
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.33 E-value=4.1e-07 Score=81.67 Aligned_cols=156 Identities=23% Similarity=0.416 Sum_probs=119.8
Q ss_pred cceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCc-cCCceEEEcccccc
Q 012257 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-FDDKEWYVGKAQKK 297 (467)
Q Consensus 219 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~l~~~~~~~~ 297 (467)
+.++++||.+.++.+++..+|...-.--+-.++. ..||+||.+.+...|.+|+..+++.. +.|+++.+...-.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4689999999999999999997642111111111 36799999999999999999988754 67777777554433
Q ss_pred hHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHH
Q 012257 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377 (467)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~ 377 (467)
.. .++.+-|.|+|+...++.|..+...||.|+.|....... -....-|+|.+.+.+.-
T Consensus 77 kq--------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQ--------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HH--------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHH
Confidence 22 223488999999999999999999999999987644321 12234478999999999
Q ss_pred HHHHhCCcEecccceEEehhhhhH
Q 012257 378 ALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 378 A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
||..|+|..+....++|.|-....
T Consensus 135 ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 135 AIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HHHhhcchHhhhhhhhcccCchhh
Confidence 999999999999999999976553
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.12 E-value=1.1e-05 Score=60.69 Aligned_cols=72 Identities=28% Similarity=0.453 Sum_probs=46.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCc-----EecccceEEeh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK-----MVVSKPLYVAL 396 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~~~g~~l~v~~ 396 (467)
+.|+|.+++..++-++|++.|+.||.|..|.+.... ..|+|.|.+.++|.+|+..+... .+.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 468999999999999999999999999999887753 38999999999999999877544 55677777765
Q ss_pred hh
Q 012257 397 AQ 398 (467)
Q Consensus 397 ~~ 398 (467)
-.
T Consensus 77 Le 78 (105)
T PF08777_consen 77 LE 78 (105)
T ss_dssp --
T ss_pred CC
Confidence 43
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.99 E-value=1.5e-05 Score=69.74 Aligned_cols=78 Identities=23% Similarity=0.481 Sum_probs=62.3
Q ss_pred eEEEecCCCCCCHHH----H--HHhhccCCceeEEEEeeCCCC-Cc-cce--EEEEcCCHHHHHHHHHHhCCcEecccce
Q 012257 323 NLYVKNLDDSISDDK----L--KELFSEFGTITSCKVMRDPNG-IS-RGS--GFVAFSTAEEASKALTEMNGKMVVSKPL 392 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~----l--~~~F~~~G~v~~v~i~~~~~~-~~-~g~--afV~f~~~~~A~~A~~~l~g~~~~g~~l 392 (467)
-+||-+|++.+-+++ | .++|.+||.|..+.+-+.... .+ .+. .+|+|.+.++|.+||.+.+|..++|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 489999998876665 2 378999999999888765411 11 122 3999999999999999999999999999
Q ss_pred EEehhhhh
Q 012257 393 YVALAQRK 400 (467)
Q Consensus 393 ~v~~~~~~ 400 (467)
+.+|...+
T Consensus 196 katYGTTK 203 (480)
T COG5175 196 KATYGTTK 203 (480)
T ss_pred eeecCchH
Confidence 99986544
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.98 E-value=7.9e-06 Score=72.63 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=72.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeE--------EEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEec
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--------v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 388 (467)
.....+|||.+||..+++.+|.++|.++|.|.. +.|.++. ++.+++-|.|.|.+...|+.|+.-++++.++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345558999999999999999999999998854 4444444 7889999999999999999999999999999
Q ss_pred ccceEEehhhhhH
Q 012257 389 SKPLYVALAQRKE 401 (467)
Q Consensus 389 g~~l~v~~~~~~~ 401 (467)
+..|+|.++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987554
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.91 E-value=3e-05 Score=58.24 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=39.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 103 (467)
+.|.|.++...++-++|++.|+.||.|..|.+.+... .|||.|.+.++|++|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHh
Confidence 5789999999999999999999999999998876543 699999999999999998743
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.90 E-value=1.7e-05 Score=69.69 Aligned_cols=86 Identities=19% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCCCCCCCCcc--CeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc
Q 012257 29 GGVGDARQFVS--TSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT 104 (467)
Q Consensus 29 ~~~~~~~~~~~--~~l~v~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 104 (467)
-+.+++-+.+. -++||+||-|++|+++|.+.+...| .+.+++.+..+..|+++|||+|...+....++.++.|-.+
T Consensus 68 ~~~~~~~s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k 147 (498)
T KOG4849|consen 68 IGAKPATSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK 147 (498)
T ss_pred ccCCccccccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc
Confidence 34444444443 4589999999999999999998887 7889999999999999999999999999999999999888
Q ss_pred ccCCceeeee
Q 012257 105 PLNGKPIRIM 114 (467)
Q Consensus 105 ~~~g~~~~v~ 114 (467)
.|.|..-.|.
T Consensus 148 ~iHGQ~P~V~ 157 (498)
T KOG4849|consen 148 TIHGQSPTVL 157 (498)
T ss_pred eecCCCCeee
Confidence 8988765553
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.87 E-value=3.4e-05 Score=49.76 Aligned_cols=53 Identities=23% Similarity=0.453 Sum_probs=42.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHH
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 98 (467)
++.|-|.|.+++.. ++|+.+|..||+|..+.+.... ..++|.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 36788999887555 5566799999999998886332 38999999999999985
No 161
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.80 E-value=6.1e-06 Score=73.67 Aligned_cols=201 Identities=13% Similarity=0.152 Sum_probs=117.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 41 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
.|.|.||.+.++.++++.+|...|.|.++.++..... .-....|||.|.+...+.-|.. |-++.|-++.+-|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 8999999999999999999999999999999863211 1233589999999999998886 66666666665553321
Q ss_pred cCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 012257 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197 (467)
Q Consensus 118 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~ 197 (467)
..+-.+.. +|..++.-..+.-...++| |-+.+.- ...++...
T Consensus 88 -------------------~~~~p~r~--af~~l~~~navprll~pdg-------~Lp~~~~----------lt~~nh~p 129 (479)
T KOG4676|consen 88 -------------------DEVIPDRF--AFVELADQNAVPRLLPPDG-------VLPGDRP----------LTKINHSP 129 (479)
T ss_pred -------------------CCCCccHH--HHHhcCcccccccccCCCC-------ccCCCCc----------cccccCCc
Confidence 11111111 4443332221111111111 0000000 00000000
Q ss_pred --eEecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHH
Q 012257 198 --VFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275 (467)
Q Consensus 198 --~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 275 (467)
+...+..+........... .+++++.+|+..+...++.+.|..+|.|....+... ....+|.+.|........|
T Consensus 130 ~ailktP~Lp~~~~A~kleei-rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEI-RRTREVQSLISAAILPESGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred cceecCCCCChHhhhhhhHHH-Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHH
Confidence 0001111111111111111 267899999999999999999999999877665443 2344777999888777777
Q ss_pred HHHhCCCccC
Q 012257 276 VEALNGKKFD 285 (467)
Q Consensus 276 ~~~l~~~~~~ 285 (467)
+. .+|..+.
T Consensus 206 lr-~~gre~k 214 (479)
T KOG4676|consen 206 LR-SHGRERK 214 (479)
T ss_pred HH-hcchhhh
Confidence 76 5666654
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.79 E-value=6.6e-05 Score=63.56 Aligned_cols=92 Identities=27% Similarity=0.316 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeE
Q 012257 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITS 350 (467)
Q Consensus 271 ~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~ 350 (467)
-|..|...|++....++.+.+.++... .|+|.||...++-+.+.+.|+.||.|+.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e~ 60 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIER 60 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccch
Confidence 466677779999999999999998762 5999999999999999999999999999
Q ss_pred EEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEe
Q 012257 351 CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387 (467)
Q Consensus 351 v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 387 (467)
..+..|..++..+-++|+|...-.|.+|.......-|
T Consensus 61 av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 61 AVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred heeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 9999999999999999999999999999998754433
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.78 E-value=3.6e-05 Score=68.55 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=75.2
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccC
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 107 (467)
.....+|||-+||..+++++|.++|..+|.|. -|+|.+++.|+..++-|.|.|.+...|+.|+.-++...+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45578899999999999999999999998553 5778899999999999999999999999999999999999
Q ss_pred CceeeeeecccC
Q 012257 108 GKPIRIMYSYRD 119 (467)
Q Consensus 108 g~~~~v~~~~~~ 119 (467)
++.|+|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999776544
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.76 E-value=8e-05 Score=65.33 Aligned_cols=116 Identities=18% Similarity=0.359 Sum_probs=80.2
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHH------HHHHhcCCCeEEEEEEecCCCCccc-cEE--EEEecChHHHHHHHHHhC
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQL------YDLFNQMGQVVSVRVCRDLSTRRSL-GYG--YVNYNAAHEATRALDELN 102 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l------~~~f~~~G~v~~v~i~~~~~~~~~~-g~a--fV~f~~~~~A~~A~~~l~ 102 (467)
..++.....-+||-+||+.+..|++ .++|.+||.|..|.|-+....-.+. +.+ ||+|.+.|||.+|+...+
T Consensus 107 sniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD 186 (480)
T COG5175 107 SNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD 186 (480)
T ss_pred ccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc
Confidence 3455556677999999998888773 5799999999988887654222221 223 999999999999999999
Q ss_pred CcccCCceeeeeecccC------cccccCCCccEEEcCCC---CcCCHHHHHHH
Q 012257 103 FTPLNGKPIRIMYSYRD------PTIRKSGAGNIFIKNLD---KSIDNKALHDT 147 (467)
Q Consensus 103 ~~~~~g~~~~v~~~~~~------~~~~~~~~~~l~v~nlp---~~~t~~~l~~~ 147 (467)
+..++|+.|+..+...+ ....=.+..+.|+.--- ...+++||...
T Consensus 187 gs~~DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 187 GSLLDGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred cccccCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 99999999998664321 11111233466664432 23467777654
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.72 E-value=2e-05 Score=66.52 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=60.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC---------CC----ccceEEEEcCCHHHHHHHHHHhCCcEec
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN---------GI----SRGSGFVAFSTAEEASKALTEMNGKMVV 388 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~---------~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 388 (467)
-.||+++||+.+....|+++|+.||.|-+|.+-+... |. ....|+|+|.+...|.++...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 3699999999999999999999999999999877642 12 2246789999999999999999999999
Q ss_pred cc
Q 012257 389 SK 390 (467)
Q Consensus 389 g~ 390 (467)
|+
T Consensus 155 gk 156 (278)
T KOG3152|consen 155 GK 156 (278)
T ss_pred CC
Confidence 86
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.71 E-value=0.0001 Score=62.39 Aligned_cols=89 Identities=24% Similarity=0.388 Sum_probs=80.3
Q ss_pred HHHHHHHHHhCCcccCCceeeeeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEE
Q 012257 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYG 171 (467)
Q Consensus 92 ~~A~~A~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~a 171 (467)
.-|..|-..|++....|+.++|.++.. ..|+|.||...++.+.+...|+.||+|....++.|..+...+-+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg 75 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREG 75 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccc
Confidence 446777778999999999999998863 46999999999999999999999999999999999889999999
Q ss_pred EEEeCCHHHHHHHHHHhc
Q 012257 172 FVQFDNEESAKSAIDKLN 189 (467)
Q Consensus 172 fV~f~~~~~A~~a~~~l~ 189 (467)
+|+|...-.|.+|+..+.
T Consensus 76 ~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhhcchhHHHHHHHhc
Confidence 999999999999998874
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00016 Score=68.13 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=65.6
Q ss_pred CCceEEEecCCCCCCH------HHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEec-ccce
Q 012257 320 EGLNLYVKNLDDSISD------DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPL 392 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~------~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l 392 (467)
-...|+|.|+|.--.. .-|..+|+++|+|..+.++.++.|..+|+.|++|++..+|..|++.|||+.|+ .+..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3447999999853222 35667899999999999999998889999999999999999999999999997 4567
Q ss_pred EEehhhh
Q 012257 393 YVALAQR 399 (467)
Q Consensus 393 ~v~~~~~ 399 (467)
.|..-+.
T Consensus 137 ~v~~f~d 143 (698)
T KOG2314|consen 137 FVRLFKD 143 (698)
T ss_pred Eeehhhh
Confidence 7765443
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.63 E-value=0.00013 Score=47.06 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=41.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHH
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~ 379 (467)
+.|-|.+.+....+ .+..+|..||+|.++.+... ..+.+|.|.++.+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 35888999977664 45568889999999888732 349999999999999985
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.61 E-value=3.8e-05 Score=64.94 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=63.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC--------Cccc----cEEEEEecChHHHHHHHHHhCCcc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST--------RRSL----GYGYVNYNAAHEATRALDELNFTP 105 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~--------~~~~----g~afV~f~~~~~A~~A~~~l~~~~ 105 (467)
.+-.||+++||+......|+++|+.||.|-.|.+-+...+ |.+. .-++|+|.+...|.++...||+.+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999876555 2222 357899999999999999999999
Q ss_pred cCCcee
Q 012257 106 LNGKPI 111 (467)
Q Consensus 106 ~~g~~~ 111 (467)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988653
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.54 E-value=7.3e-05 Score=67.92 Aligned_cols=69 Identities=23% Similarity=0.410 Sum_probs=57.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeC---C-C--CC--------ccceEEEEcCCHHHHHHHHHHhCC
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---P-N--GI--------SRGSGFVAFSTAEEASKALTEMNG 384 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~---~-~--~~--------~~g~afV~f~~~~~A~~A~~~l~g 384 (467)
-++++|.+.|||.+-.-+.|.++|+.+|.|+.|+|+.. + + +. .+-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36779999999998888999999999999999999887 2 1 11 146899999999999999998865
Q ss_pred cEe
Q 012257 385 KMV 387 (467)
Q Consensus 385 ~~~ 387 (467)
..-
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 433
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.52 E-value=0.0004 Score=51.24 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=53.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEE-EeeC-------CCCCccceEEEEcCCHHHHHHHHHHhCCcEecccc
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCK-VMRD-------PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~-i~~~-------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 391 (467)
....|.|.+.|+. ....|.+.|++||.|.+.. +.++ +........-|+|++..+|.+|+. -||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3446999999988 5567889999999998764 1111 111124589999999999999997 5999998864
Q ss_pred -eEEehhhhh
Q 012257 392 -LYVALAQRK 400 (467)
Q Consensus 392 -l~v~~~~~~ 400 (467)
+-|.+.++.
T Consensus 83 mvGV~~~~~~ 92 (100)
T PF05172_consen 83 MVGVKPCDPA 92 (100)
T ss_dssp EEEEEE-HHH
T ss_pred EEEEEEcHHh
Confidence 557776543
No 172
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.48 E-value=0.00029 Score=66.77 Aligned_cols=84 Identities=21% Similarity=0.248 Sum_probs=67.3
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhc-cCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEe---cccce
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFS-EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV---VSKPL 392 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~-~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 392 (467)
....+..|+|.||---+|.-.|+.++. ..|.|++. ++-. -+..|||.|.+.++|.+.+.+|||..+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 344566899999999999999999998 55677766 2221 234899999999999999999999988 57899
Q ss_pred EEehhhhhHHHHH
Q 012257 393 YVALAQRKEERRA 405 (467)
Q Consensus 393 ~v~~~~~~~~~~~ 405 (467)
.+.|.........
T Consensus 515 ~adf~~~deld~h 527 (718)
T KOG2416|consen 515 IADFVRADELDKH 527 (718)
T ss_pred EeeecchhHHHHH
Confidence 9999876665543
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.43 E-value=5.6e-05 Score=64.17 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=54.0
Q ss_pred HHHHHhhc-cCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 336 DKLKELFS-EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 336 ~~l~~~F~-~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
++|...|+ +||+|+++.|..+-.-.-+|-++|.|...++|++|+..|||.++.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 9999999988777655568899999999999999999999999999999999864
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.35 E-value=0.00053 Score=53.71 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=47.1
Q ss_pred HHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 336 ~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
.+|.+.|..||+|.-+|+..+ .-+|+|.+-++|.+|+. ++|..++|+.|+|+...+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 377788999999998888775 78999999999999996 8999999999999987654
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.32 E-value=0.00023 Score=64.78 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=61.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEec---CCC---Cc-------cccEEEEEecChHHHHHHHHHhCC
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD---LST---RR-------SLGYGYVNYNAAHEATRALDELNF 103 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~---~~~---~~-------~~g~afV~f~~~~~A~~A~~~l~~ 103 (467)
-++++|.+.|||.+-.-+.|.++|..+|.|.+|+|++- ... .. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999864 111 11 246899999999999999997755
Q ss_pred cccCCceeee
Q 012257 104 TPLNGKPIRI 113 (467)
Q Consensus 104 ~~~~g~~~~v 113 (467)
..-+..-+++
T Consensus 309 e~~wr~glkv 318 (484)
T KOG1855|consen 309 EQNWRMGLKV 318 (484)
T ss_pred hhhhhhcchh
Confidence 4433333444
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.23 E-value=0.0016 Score=48.13 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=50.7
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEE-ecC------CCCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC-RDL------STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~-~~~------~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
..+-|.|-+.|+. ....|.++|++||.|++..-. ++. ..-...+..-|+|+++.+|.+||. .|+..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567889998886 678899999999999887500 000 000112478999999999999998 6999888865
Q ss_pred e-eeeec
Q 012257 111 I-RIMYS 116 (467)
Q Consensus 111 ~-~v~~~ 116 (467)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 34443
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.16 E-value=0.0011 Score=57.32 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=55.3
Q ss_pred HHHHHHhhccCCceeEEEEeeCCCCC--ccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhH
Q 012257 335 DDKLKELFSEFGTITSCKVMRDPNGI--SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 335 ~~~l~~~F~~~G~v~~v~i~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
++++++-+++||.|..|.|...++.. ----.||+|...++|.+|+-.|||++|+|+.+..-|.....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 46889999999999999888775311 12358999999999999999999999999999988876443
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.03 E-value=0.0041 Score=41.07 Aligned_cols=54 Identities=28% Similarity=0.419 Sum_probs=45.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhccC---CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEF---GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~---G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 382 (467)
..|+|.|++ .++.++|+.+|..| ....+|.++.|. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 369999996 57888999999998 234588888874 6889999999999999865
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.96 E-value=0.004 Score=48.91 Aligned_cols=71 Identities=28% Similarity=0.391 Sum_probs=51.6
Q ss_pred ccCeEEEcCCCC------CCCH---HHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC
Q 012257 38 VSTSLYVGDLDL------SVND---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (467)
Q Consensus 38 ~~~~l~v~nLp~------~~~e---~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 108 (467)
+..||.|+=+.+ ..++ .+|.+.|+.||.|.=|++..+ .-+|+|.+.++|.+|++ +++..+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 345666665552 1222 368889999999888887754 36999999999999997 89999999
Q ss_pred ceeeeeecc
Q 012257 109 KPIRIMYSY 117 (467)
Q Consensus 109 ~~~~v~~~~ 117 (467)
+.++|..-.
T Consensus 97 ~~l~i~LKt 105 (146)
T PF08952_consen 97 RTLKIRLKT 105 (146)
T ss_dssp EEEEEEE--
T ss_pred EEEEEEeCC
Confidence 999996543
No 180
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.003 Score=59.85 Aligned_cols=76 Identities=28% Similarity=0.423 Sum_probs=60.9
Q ss_pred CCCccEEEcCCCCcCC------HHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccC-Cee
Q 012257 125 SGAGNIFIKNLDKSID------NKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQ 197 (467)
Q Consensus 125 ~~~~~l~v~nlp~~~t------~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~-g~~ 197 (467)
.-...|+|.|+|.--. ..-|..+|+++|.+....+..+..|..+|+.|++|++..+|..|++.|||..+. +..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3456899999985321 234557899999999999998877779999999999999999999999998765 444
Q ss_pred eEe
Q 012257 198 VFV 200 (467)
Q Consensus 198 ~~v 200 (467)
..+
T Consensus 136 f~v 138 (698)
T KOG2314|consen 136 FFV 138 (698)
T ss_pred EEe
Confidence 444
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.93 E-value=0.0051 Score=42.83 Aligned_cols=54 Identities=22% Similarity=0.432 Sum_probs=43.1
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 383 (467)
.||--..|..|-..||.++|++||.| .|.++.+ ..|||...+++.|..|+..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 45555599999999999999999999 7777776 389999999999999999886
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.75 E-value=0.0089 Score=46.11 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=60.8
Q ss_pred CCCCCCCccCeEEEcCCCCCCCH-H---HHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc
Q 012257 31 VGDARQFVSTSLYVGDLDLSVND-S---QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (467)
Q Consensus 31 ~~~~~~~~~~~l~v~nLp~~~~e-~---~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 106 (467)
.......+..+|.|+=|..++.. + .|.+.++.||+|.+|...-.. .|.|.|.+..+|-+|+...+. ..
T Consensus 78 kk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s-~~ 149 (166)
T PF15023_consen 78 KKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS-RA 149 (166)
T ss_pred cccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC-CC
Confidence 34556778899999888776554 3 456677889999999885322 699999999999999998765 56
Q ss_pred CCceeeeeecc
Q 012257 107 NGKPIRIMYSY 117 (467)
Q Consensus 107 ~g~~~~v~~~~ 117 (467)
.|..++..|..
T Consensus 150 pgtm~qCsWqq 160 (166)
T PF15023_consen 150 PGTMFQCSWQQ 160 (166)
T ss_pred CCceEEeeccc
Confidence 77888877754
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.68 E-value=0.0052 Score=53.29 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCeEEEEEEecCCCCccc-cEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 53 DSQLYDLFNQMGQVVSVRVCRDLSTRRSL-GYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 53 e~~l~~~f~~~G~v~~v~i~~~~~~~~~~-g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
|+++.+-+.+||.|..|.|..+..---.. --.||+|...++|.+|+-.||+..|.|+.++..+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35678889999999999999764322111 136999999999999999999999999999887654
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.55 E-value=0.0092 Score=46.05 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=56.7
Q ss_pred cCCCCceEEEecCCCCC----CHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccce
Q 012257 317 DKFEGLNLYVKNLDDSI----SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~----~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 392 (467)
..++..+|.|+=|..++ +-..+...++.||.|.+|..... ..|.|.|.|..+|.+|+.+++. ...|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 34566688887665544 33455566789999999987553 4899999999999999999886 5567778
Q ss_pred EEehhh
Q 012257 393 YVALAQ 398 (467)
Q Consensus 393 ~v~~~~ 398 (467)
.++|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 877743
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.49 E-value=0.0014 Score=55.95 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=50.6
Q ss_pred HHHHHHHh-hcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccc
Q 012257 142 KALHDTFS-TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203 (467)
Q Consensus 142 ~~l~~~f~-~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~ 203 (467)
+++...|+ +||+|+++.+.....-.-.|-+||.|...++|++|+..|++..+.|+.|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 999999987766544456788999999999999999999999999999987543
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.48 E-value=0.018 Score=38.11 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=43.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 101 (467)
..+|+|+|+.. .+.++|+.+|..| ++ ..|.-+-|. .|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35799999855 8999999999999 54 466666664 4899999999999999754
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.34 E-value=0.0032 Score=60.00 Aligned_cols=71 Identities=23% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 106 (467)
-+.+.+.+.+..|+|.||---.|.-.|+.++. .+|.|++.||-+-+. .|||.|.+.++|...+..|++..+
T Consensus 435 vpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS------hCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 435 VPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS------HCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc------ceeEecccHHHHHHHHHHHhcccc
Confidence 34566888899999999999999999999998 566888887766554 699999999999999999987644
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.30 E-value=0.055 Score=40.87 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=56.6
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 108 (467)
....+.+..+.+...|+.++-++|..+.+.+- .|..++|++|... ++..+++.|.+.++|.......||+.|..
T Consensus 7 ~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 7 LPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33445566677776667777778877777663 7889999988653 55689999999999999999999988744
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.18 E-value=0.0041 Score=57.70 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCccCeEEEcCCCCCCCH-HHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc
Q 012257 27 NNGGVGDARQFVSTSLYVGDLDLSVND-SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (467)
Q Consensus 27 ~~~~~~~~~~~~~~~l~v~nLp~~~~e-~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 105 (467)
.+.+.......+.+.|-+.-.|..... ++|..+|..||.|..|.+-... -.|.|+|.+..+|-+|-. ..+..
T Consensus 360 rG~gv~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~av 432 (526)
T KOG2135|consen 360 RGRGVPGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAV 432 (526)
T ss_pred cCCCCCcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccce
Confidence 444666677778889999999998776 7899999999999999886542 269999999999977776 57899
Q ss_pred cCCceeeeeecccCc
Q 012257 106 LNGKPIRIMYSYRDP 120 (467)
Q Consensus 106 ~~g~~~~v~~~~~~~ 120 (467)
|+++.|+|.|.+..+
T Consensus 433 lnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 433 LNNRFIKLFWHNPSP 447 (526)
T ss_pred ecCceeEEEEecCCc
Confidence 999999999987654
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.86 E-value=0.004 Score=55.53 Aligned_cols=77 Identities=21% Similarity=0.407 Sum_probs=60.4
Q ss_pred ceEEEecCCCCCCHHHHH---HhhccCCceeEEEEeeCCC----CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 322 LNLYVKNLDDSISDDKLK---ELFSEFGTITSCKVMRDPN----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~---~~F~~~G~v~~v~i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
.-+||-+|+..+-++.+. ++|.+||.|..|.+..+.. ......++|+|...++|.+||...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 347888888776555544 4799999999998888652 122345899999999999999999999999988777
Q ss_pred ehhh
Q 012257 395 ALAQ 398 (467)
Q Consensus 395 ~~~~ 398 (467)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 7653
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.85 E-value=0.089 Score=39.76 Aligned_cols=66 Identities=23% Similarity=0.231 Sum_probs=50.2
Q ss_pred ceEEEecCC-CCCCHHHHHHhhccC-CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEec
Q 012257 322 LNLYVKNLD-DSISDDKLKELFSEF-GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (467)
Q Consensus 322 ~~l~V~nlp-~~~~~~~l~~~F~~~-G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 388 (467)
..+.|-..| ..++.++|..+.+.+ ..|..++|+++... ++.-+++.|.+.++|..-...+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 345444444 555666776666666 46778899987643 5678999999999999999999999885
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.78 E-value=0.014 Score=48.61 Aligned_cols=69 Identities=9% Similarity=0.167 Sum_probs=45.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhc-CCCe---EEEEEEe-cCCCCc-cccEEEEEecChHHHHHHHHHhCCccc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQ-MGQV---VSVRVCR-DLSTRR-SLGYGYVNYNAAHEATRALDELNFTPL 106 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~-~G~v---~~v~i~~-~~~~~~-~~g~afV~f~~~~~A~~A~~~l~~~~~ 106 (467)
...+|.||+||++++|+++.+.++. ++.- ..+.-.. +...+. ...-|||.|.+.+++......+++..|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4579999999999999999998777 5544 2332111 111121 224699999999999999998888766
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.75 E-value=0.075 Score=37.18 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=40.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 103 (467)
...+|+ .|..=...||.++|+.||.|. |.-+.|. .|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 345555 999999999999999999974 4444442 699999999999999988753
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.49 E-value=0.024 Score=47.33 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=47.1
Q ss_pred CHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC--CcEecccceEEehhhhh
Q 012257 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN--GKMVVSKPLYVALAQRK 400 (467)
Q Consensus 334 ~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~~~ 400 (467)
..+.|+++|..|+.+..+..++. =+-..|.|.+.++|.+|+..|+ +..+.|..++|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999988887775 2378999999999999999999 99999999999998533
No 195
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=0.083 Score=46.38 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=51.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce-eeeeec
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP-IRIMYS 116 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~-~~v~~~ 116 (467)
.=|-|-+.|+ -.-..|.++|++||.|+...... .-.+-.|.|.+.-+|++||. .+++.|.|.. |-|..+
T Consensus 198 ~WVTVfGFpp-g~~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPP-GQVSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCc-cchhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 4566777777 44567899999999998775542 22488999999999999998 5888887755 445443
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.02 E-value=0.013 Score=52.34 Aligned_cols=78 Identities=21% Similarity=0.389 Sum_probs=62.2
Q ss_pred ccCeEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEEecCC----CCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 38 VSTSLYVGDLDLSVNDSQLY---DLFNQMGQVVSVRVCRDLS----TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~---~~f~~~G~v~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
...-+||-+|+.....+.+. ++|.+||.|..|.+.++.. .+.. ..++|+|...+||..|+...++...+|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34668899999877666553 5899999999999988762 2222 35899999999999999999999999999
Q ss_pred eeeeec
Q 012257 111 IRIMYS 116 (467)
Q Consensus 111 ~~v~~~ 116 (467)
++..+.
T Consensus 155 lka~~g 160 (327)
T KOG2068|consen 155 LKASLG 160 (327)
T ss_pred hHHhhC
Confidence 777554
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.88 E-value=0.8 Score=40.46 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=109.1
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECC--------CCCceeEEEEEeCCHHHHHHHH----HHhCC--C
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA--------DGKSKCFGFVNFDDPDDAARSV----EALNG--K 282 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~--------~~~~~g~afv~f~~~~~a~~a~----~~l~~--~ 282 (467)
..+.|.+.|+..+++...+...|-+||.|+++.++.+. ..+......+.|-+.+.+..-. ..+.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999999999875 2233456788888877664332 22222 2
Q ss_pred ccCCceEEEcccccchHHHH------Hhh-hhhhhhhh-ccccCCCCceEEEecCCCCCCHHHHHHhh---ccCC----c
Q 012257 283 KFDDKEWYVGKAQKKYEREM------ELK-GKFEQSLK-ETADKFEGLNLYVKNLDDSISDDKLKELF---SEFG----T 347 (467)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~~------~~~-~~~~~~~~-~~~~~~~~~~l~V~nlp~~~~~~~l~~~F---~~~G----~ 347 (467)
.+....|.+.+..-...... .+. ........ .......+++|.|.--.....++-+.+.+ ..-+ .
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 34555666655542111100 000 00011111 22333456677776544333443333322 2223 4
Q ss_pred eeEEEEeeCC---CCCccceEEEEcCCHHHHHHHHHHhCCc--Eec-ccceEEehhh
Q 012257 348 ITSCKVMRDP---NGISRGSGFVAFSTAEEASKALTEMNGK--MVV-SKPLYVALAQ 398 (467)
Q Consensus 348 v~~v~i~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~-g~~l~v~~~~ 398 (467)
+++|.++... ...+..||.++|-+...|...+..|... ..+ .+...|+...
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 6778877654 3456789999999999999999877633 332 3455555544
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.77 E-value=0.079 Score=50.55 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=54.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhc--CCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCC--cccCCceeeee
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKPIRIM 114 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~~~v~ 114 (467)
.|.|+++-||..+.+|+|+.+|+. |=.+.++..-.... =||+|++..||+.|.+.|.. ..|.|+.|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 466889999999999999999975 44677887765432 48999999999999998753 46888887543
No 199
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.68 E-value=0.079 Score=44.17 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=52.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcc-CCce---eEEEEeeCC--CC-CccceEEEEcCCHHHHHHHHHHhCCcEeccc--
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSE-FGTI---TSCKVMRDP--NG-ISRGSGFVAFSTAEEASKALTEMNGKMVVSK-- 390 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~-~G~v---~~v~i~~~~--~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-- 390 (467)
....|.|++||+.+|++++.+.++. ++.- ..+.-.... .. ....-|+|.|.+.+++..-...++|+.|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3447999999999999999998887 6655 233211221 11 1245799999999999999999999988532
Q ss_pred ---ceEEehhhhh
Q 012257 391 ---PLYVALAQRK 400 (467)
Q Consensus 391 ---~l~v~~~~~~ 400 (467)
...|.||.-+
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 4567776543
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.67 E-value=0.14 Score=34.51 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 50 SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 50 ~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
.++-++++..++.|+- ..| ..|+ + || ||.|.+.++|+++....++..+.+-.+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5778999999999964 333 3454 3 34 89999999999999998888776655543
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.62 E-value=0.018 Score=57.60 Aligned_cols=74 Identities=30% Similarity=0.424 Sum_probs=63.6
Q ss_pred EEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEe--cccceEEehhhhhH
Q 012257 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRKE 401 (467)
Q Consensus 324 l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~~ 401 (467)
..+.|.+...+-..|..+|+.||.|.+++.+++-+ .|.|+|.+.+.|..|+++|+|+.+ -|-+.+|.|++...
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 44555566778889999999999999999988754 899999999999999999999987 48889999998665
Q ss_pred H
Q 012257 402 E 402 (467)
Q Consensus 402 ~ 402 (467)
.
T Consensus 376 ~ 376 (1007)
T KOG4574|consen 376 M 376 (1007)
T ss_pred c
Confidence 4
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.56 E-value=0.05 Score=53.13 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCCCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccC
Q 012257 28 NGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (467)
Q Consensus 28 ~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 107 (467)
+.++-...-.+.-++||+|+-..+..+-+..+...||-|.+.+... |+|..|....-+.+|+..+....++
T Consensus 29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence 3344444445678999999999999999999999999988876643 8999999999999999988888888
Q ss_pred Cceeeeee
Q 012257 108 GKPIRIMY 115 (467)
Q Consensus 108 g~~~~v~~ 115 (467)
|..+.+..
T Consensus 100 ~~kl~~~~ 107 (668)
T KOG2253|consen 100 DQKLIENV 107 (668)
T ss_pred cchhhccc
Confidence 87776644
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.55 E-value=1.1 Score=39.66 Aligned_cols=156 Identities=13% Similarity=0.201 Sum_probs=102.1
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC-------CCccccEEEEEecChHHHHHHH----HHhC
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS-------TRRSLGYGYVNYNAAHEATRAL----DELN 102 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~----~~l~ 102 (467)
...--+|.|...||..+++--.+...|-+||+|++|.++.+.. .........+.|-+.+.+...- +.|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 3445589999999999999999999999999999999998761 1122346889999999885533 3332
Q ss_pred --CcccCCceeeeeeccc---Cc---------------------ccccCCCccEEEcCCCCcCCHHHHH-H---HHhhcC
Q 012257 103 --FTPLNGKPIRIMYSYR---DP---------------------TIRKSGAGNIFIKNLDKSIDNKALH-D---TFSTFG 152 (467)
Q Consensus 103 --~~~~~g~~~~v~~~~~---~~---------------------~~~~~~~~~l~v~nlp~~~t~~~l~-~---~f~~~g 152 (467)
...+....+.+.+..- .. ......-++|.|.= ...+.++++. + ++..-+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCC
Confidence 2346777777766431 10 01122234555543 2444344433 2 232223
Q ss_pred ----CeEEEEEeeC---CCCCceeEEEEEeCCHHHHHHHHHHhcC
Q 012257 153 ----NILSCKVATD---SLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (467)
Q Consensus 153 ----~v~~~~~~~~---~~g~~~~~afV~f~~~~~A~~a~~~l~~ 190 (467)
-+++|.++.. ....+..||.+.|-+...|...+..+..
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 3567777765 2234678999999999999999998863
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.35 E-value=0.036 Score=52.73 Aligned_cols=67 Identities=13% Similarity=0.351 Sum_probs=52.4
Q ss_pred ccEEEcCCCCcCCHHHHHHHHhh--cCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEe
Q 012257 128 GNIFIKNLDKSIDNKALHDTFST--FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG--MLLNDKQVFV 200 (467)
Q Consensus 128 ~~l~v~nlp~~~t~~~l~~~f~~--~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~--~~~~g~~~~v 200 (467)
+-|.++-||..+-.++++.+|.. +..+.+|.+-.. .-.||+|++..||+.|.+.|.. +.|.|+.|..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 34668999999999999999984 557788887543 2369999999999999998854 3466766544
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.13 E-value=0.16 Score=42.51 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=45.7
Q ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhC--CcccCCceeeeeecc
Q 012257 52 NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKPIRIMYSY 117 (467)
Q Consensus 52 ~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~~~v~~~~ 117 (467)
..+.|+++|..++.+..+..++.=+ =..|.|.+.++|.+|...|+ +..+.|..+++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3478999999999988888876532 48999999999999999998 889999999998873
No 206
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.70 E-value=0.1 Score=52.06 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=11.2
Q ss_pred EeCCHHHHHHHHHHhcCCc
Q 012257 174 QFDNEESAKSAIDKLNGML 192 (467)
Q Consensus 174 ~f~~~~~A~~a~~~l~~~~ 192 (467)
.-++..++.++++.+-+..
T Consensus 205 ~~k~~~eiIrClka~mNn~ 223 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAFMNNK 223 (1102)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3445667777777664443
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.68 E-value=0.22 Score=43.92 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=51.9
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccc-eEEehh
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP-LYVALA 397 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~~ 397 (467)
=|.|.+.|+.- ..-|..+|++||+|.+.... .+|. +-.|.|.++-+|.+||.. ||+.|+|.. |-|+-.
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ngN---wMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNGN---WMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCCc---eEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 47788888663 35677899999999886554 3343 999999999999999984 999998764 445543
No 208
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.62 E-value=0.35 Score=34.69 Aligned_cols=65 Identities=15% Similarity=0.304 Sum_probs=45.0
Q ss_pred EEEEecChHHHHHHHHHhCC-cccCCceeeeeeccc--C-----cccccCCCccEEEcCCCCcCCHHHHHHHH
Q 012257 84 GYVNYNAAHEATRALDELNF-TPLNGKPIRIMYSYR--D-----PTIRKSGAGNIFIKNLDKSIDNKALHDTF 148 (467)
Q Consensus 84 afV~f~~~~~A~~A~~~l~~-~~~~g~~~~v~~~~~--~-----~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 148 (467)
|+|+|.+.+-|++.++.-.+ ..+.+..++|..+.- . ........++|.|.|||...++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999985332 345666666544321 1 11123446789999999999999988654
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.56 E-value=0.2 Score=46.73 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=59.1
Q ss_pred CceEEEecCCCCCCHHHHHHhhccC-CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEec
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEF-GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~-G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 388 (467)
+..|.|-.+|..++..||..|+..| -.|.+++++++..+ .+...+|.|.+.++|..-.+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 5689999999999999999999877 46889999997544 3568999999999999999999999885
No 210
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.54 E-value=0.083 Score=52.62 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=3.8
Q ss_pred HHHHHHHHhc
Q 012257 53 DSQLYDLFNQ 62 (467)
Q Consensus 53 e~~l~~~f~~ 62 (467)
++++...|..
T Consensus 85 ~~e~~~~F~~ 94 (1102)
T KOG1924|consen 85 SNEVLELFEL 94 (1102)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.37 E-value=0.33 Score=45.34 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=59.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 108 (467)
++.|+|-.+|..++-.||..|+..+- .|.++++++|... ++..++|.|.+.+||....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 88999999999999999999987764 7999999997654 44589999999999999999999987744
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.30 E-value=0.27 Score=34.30 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHhhccCC-----ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 330 DDSISDDKLKELFSEFG-----TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 330 p~~~~~~~l~~~F~~~G-----~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
-..++..+|..++...+ .|-++++..+ |+||+-.. +.|..+++.|++..+.|++++|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35678888988887664 4566787776 99999876 5899999999999999999999754
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.55 E-value=0.052 Score=50.73 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=58.4
Q ss_pred ceEEEecCCCCC-CHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 322 LNLYVKNLDDSI-SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 322 ~~l~V~nlp~~~-~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
+.|-+.-.|+.. +-.+|...|.+||+|..|.+-.. .-.|.|+|.+..+|-+|.. .++..|+++.|+|-|-.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 345555556554 45789999999999999887554 2379999999999988875 6999999999999997753
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.11 E-value=0.94 Score=30.59 Aligned_cols=55 Identities=13% Similarity=0.363 Sum_probs=43.8
Q ss_pred CCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 332 ~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
.++-++++.-+..|+-. +|..+.+| -||.|.+.++|.++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56788999999999543 34455443 479999999999999999999998877654
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.91 E-value=0.11 Score=52.36 Aligned_cols=70 Identities=27% Similarity=0.414 Sum_probs=57.1
Q ss_pred cCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc--CCceeeeeecccCc
Q 012257 45 GDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL--NGKPIRIMYSYRDP 120 (467)
Q Consensus 45 ~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~~~v~~~~~~~ 120 (467)
.|.+...+-.-|..+|+.||.|.+.+.+++-. .|.|+|.+.+.|..|+..++|++. -|-+.+|.+++..+
T Consensus 304 ~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 33444556667889999999999999988764 799999999999999999998864 67778888876543
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.42 E-value=1.3 Score=42.91 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=63.0
Q ss_pred CCCCCccCeEEEcCCCCC-CCHHHHHHHHhcC----CCeEEEEEEecC----------CCCc------------------
Q 012257 33 DARQFVSTSLYVGDLDLS-VNDSQLYDLFNQM----GQVVSVRVCRDL----------STRR------------------ 79 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~----G~v~~v~i~~~~----------~~~~------------------ 79 (467)
+.....+++|-|.|+.|+ +.-++|.-+|+.| |.|++|.|+... .+|.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 444667899999999995 5568999988877 589999987421 1111
Q ss_pred -------------------cccEEEEEecChHHHHHHHHHhCCcccCC--ceeeeee
Q 012257 80 -------------------SLGYGYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (467)
Q Consensus 80 -------------------~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v~~ 115 (467)
...||.|+|.+.++|....+.|+|+.|.. ..+.+++
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 22699999999999999999999998844 4444444
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.18 E-value=1.6 Score=30.35 Aligned_cols=57 Identities=14% Similarity=0.320 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHhcCC-----CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 50 SVNDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 50 ~~~e~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
.++..+|..++...+ .|-.|.|..+ |+||+-.. +.|.++++.|++..+.|+.++|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 467778888887663 5777877543 78887654 488999999999999999999874
No 218
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.66 E-value=0.34 Score=47.63 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=62.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.++..++||+|+-..+..+-++.+...+|.|.++.... |+|.+|..+..+.+|+..++-..++|..+.+.-
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 44566899999999999999999999999998887655 999999999999999999998889888877765
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=85.88 E-value=1.1 Score=36.44 Aligned_cols=115 Identities=14% Similarity=0.027 Sum_probs=73.4
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhc-CCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 41 SLYVGDLD--LSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 41 ~l~v~nLp--~~~~e~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
...|+.+. .+.+-..|.+.+.+ ++....+.+..-. .++..+.|.+.+|+.++++ .....+.|..+.+..-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 34444443 24556677666654 2333333333221 1578999999999999997 45556778777776654
Q ss_pred cCcccccCC----CccEEEcCCCCcC-CHHHHHHHHhhcCCeEEEEEee
Q 012257 118 RDPTIRKSG----AGNIFIKNLDKSI-DNKALHDTFSTFGNILSCKVAT 161 (467)
Q Consensus 118 ~~~~~~~~~----~~~l~v~nlp~~~-t~~~l~~~f~~~g~v~~~~~~~ 161 (467)
+........ .-=|.|.|||... +++-++.+.+.+|.+..+....
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 332221111 1226689999875 8888999999999998877544
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.31 E-value=1.4 Score=31.68 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=45.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCC-ccCCeeeEec--ccccccc-cccccccccccceeecCCCccCCHHHHHHhhc
Q 012257 171 GFVQFDNEESAKSAIDKLNGM-LLNDKQVFVG--PFLRKQE-RESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240 (467)
Q Consensus 171 afV~f~~~~~A~~a~~~l~~~-~~~g~~~~v~--~~~~~~~-~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 240 (467)
|.|+|..+.-|++.++.-... .+.+..+.+. +...... .-........+++.++++|...+++++++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999743222 3556555443 2222221 11222334457899999999999999988643
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.82 E-value=3.2 Score=40.40 Aligned_cols=80 Identities=26% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHhhccC----CceeEEEEeeCCC-----------CC---------------------
Q 012257 318 KFEGLNLYVKNLDD-SISDDKLKELFSEF----GTITSCKVMRDPN-----------GI--------------------- 360 (467)
Q Consensus 318 ~~~~~~l~V~nlp~-~~~~~~l~~~F~~~----G~v~~v~i~~~~~-----------~~--------------------- 360 (467)
...+..|-|.|+.+ .+..++|.-+|+-| |.|.+|.|..... |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 34566899999996 57889999888766 6999999876532 11
Q ss_pred ----------------ccceEEEEcCCHHHHHHHHHHhCCcEecc--cceEEehh
Q 012257 361 ----------------SRGSGFVAFSTAEEASKALTEMNGKMVVS--KPLYVALA 397 (467)
Q Consensus 361 ----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 397 (467)
...||.|+|++.+.|.+.....+|..+.. ..|.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 13689999999999999999999999974 45555553
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=77.09 E-value=5.4 Score=27.18 Aligned_cols=62 Identities=11% Similarity=0.262 Sum_probs=48.6
Q ss_pred HHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeeccc
Q 012257 54 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (467)
Q Consensus 54 ~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 118 (467)
++|.+-|...| +|..|.-+..+.++.....-||+++...+...+++ -..+++..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~---Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK---IKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee---hHhhCCeEEEEecCCC
Confidence 57888898888 88999888888777777888999988877555554 3568898999987643
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.47 E-value=13 Score=32.73 Aligned_cols=50 Identities=8% Similarity=0.203 Sum_probs=36.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChH
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 92 (467)
-.+-|+++|||.++.-.+|+.-+++.|.+ -..|..+ .++|-||+-|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 35669999999999999999999988642 2333322 24467999997743
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=76.44 E-value=14 Score=25.92 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=43.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh
Q 012257 42 LYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 42 l~v~nLp~~~~e~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 101 (467)
-|+-.++.+++..+|++.++. || .|.+|....-+... --|||.+...++|.+.-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHhh
Confidence 455557789999999999887 56 77888777654321 25999999999998877654
No 225
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=76.40 E-value=1.6 Score=35.65 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=51.4
Q ss_pred eEEEecCCCCCCH-----HHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEeccc-ceEEeh
Q 012257 323 NLYVKNLDDSISD-----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLYVAL 396 (467)
Q Consensus 323 ~l~V~nlp~~~~~-----~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~ 396 (467)
++.+.+++..+.. .....+|.+|-+..-.++++. .++.-|.|.+.+.|..|...+++..|.|+ .++.=|
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 4677777654422 233455666655544444442 34677899999999999999999999988 777777
Q ss_pred hhhhH
Q 012257 397 AQRKE 401 (467)
Q Consensus 397 ~~~~~ 401 (467)
+++..
T Consensus 87 aQ~~~ 91 (193)
T KOG4019|consen 87 AQPGH 91 (193)
T ss_pred ccCCC
Confidence 76553
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=75.85 E-value=14 Score=26.46 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=42.7
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh
Q 012257 43 YVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 43 ~v~nLp~~~~e~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 101 (467)
|.--+..+++..+|++.++. || .|.+|....-+... --|||.+...++|.+....+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHhh
Confidence 34446788999999999887 56 78888887665322 25999999999999887654
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=74.12 E-value=4.6 Score=30.97 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=31.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHH-HHHHHH
Q 012257 41 SLYVGDLDLS---------VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE-ATRALD 99 (467)
Q Consensus 41 ~l~v~nLp~~---------~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~A~~ 99 (467)
.+.|-|++.. .+-++|++.|+.|.++ .++.+.++. .+.|+|+|.|.+.-+ -..|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 3556666553 3457899999999886 477776654 467899999976544 444554
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.39 E-value=6.3 Score=31.92 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHhh-cCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccccccccccccc
Q 012257 138 SIDNKALHDTFST-FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT 216 (467)
Q Consensus 138 ~~t~~~l~~~f~~-~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~ 216 (467)
..+-..|...+.. ++....+.+..- ..++..++|.+.+++.++++. ....+.|..+.+....+...........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~ 102 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEH 102 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceec
Confidence 3556666666553 333323333331 457889999999999999973 4456777777776554332222222222
Q ss_pred cccceeecCCCccC-CHHHHHHhhcccCCeeEEEEEE
Q 012257 217 RFNNVYVKNLSETT-TEDDLKKIFGEFGIITSTAVMR 252 (467)
Q Consensus 217 ~~~~l~v~nlp~~~-~~~~l~~~f~~~g~v~~~~~~~ 252 (467)
..--+.+.+||... +++-+..+.+..|.+..+....
T Consensus 103 ~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 103 IPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred cchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 22346788999874 6677888889999988877654
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.15 E-value=9.7 Score=35.35 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=44.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEEecCCCCccccEEEEEecChHHHHHHHH
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (467)
...|-|.+.|.....++|...|+.|+. -.+|+-+.|. .||-.|.+...|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 578999999999999999999999974 3334333333 69999999999999997
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.23 E-value=14 Score=24.51 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=16.0
Q ss_pred HHHHHhhccCCceeEEEEee
Q 012257 336 DKLKELFSEFGTITSCKVMR 355 (467)
Q Consensus 336 ~~l~~~F~~~G~v~~v~i~~ 355 (467)
.+||++|+..|.|.=+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999996655543
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.39 E-value=9.5 Score=29.28 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=30.4
Q ss_pred eEEEecCCCC---------CCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHH
Q 012257 323 NLYVKNLDDS---------ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377 (467)
Q Consensus 323 ~l~V~nlp~~---------~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~ 377 (467)
++.|.|++.. .+-++|++.|+.|..+ +++.+.+..| ++|+++|+|...-..-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~g-h~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQG-HTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTE-EEEEEEEE--SSHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCC-CcEEEEEEECCChHHHH
Confidence 4667777543 3557999999999877 4666666654 57899999998754433
No 232
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.26 E-value=33 Score=24.53 Aligned_cols=57 Identities=14% Similarity=0.305 Sum_probs=44.1
Q ss_pred EEEecCCCCCCHHHHHHhhcc-CC-ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHh
Q 012257 324 LYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (467)
Q Consensus 324 l~V~nlp~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 382 (467)
-|..-.+...+..+|++.++. || .|.+|+...-..+ ..-|+|.+..-.+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 566677888999999999976 56 6888888776543 347999999998888876543
No 233
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=60.96 E-value=38 Score=23.74 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=44.0
Q ss_pred eEEEecCCCCCCHHHHHHhhcc-CC-ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHh
Q 012257 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 382 (467)
.-|+..++...+..+|++.++. || .|.+|+...-+.+ ..-|||++..-++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 3677778889999999999876 55 6788877766543 347999999888888775543
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=60.54 E-value=21 Score=24.24 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 54 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 54 ~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
++|.+-|...| ++..|.-+..+.++.....-+|+.....+-... ++-..++|.++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I---l~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI---LNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce---EeehhhCCeeEEEecCc
Confidence 46888899999 899999888877776667888888777665553 33456788888887654
No 235
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=59.23 E-value=1.7 Score=41.89 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=55.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
...|+|+++|++++++-++|..+|+.+--+..+-+..+...+.-....+|.|.-.-+-..|+..|++..+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 346889999999999999999999998655666554443333344568899988777777777777766555443
No 236
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=51.95 E-value=48 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHhcC-C----CeEEEEEEecCCCCccccEEEEEecChHHHHH
Q 012257 50 SVNDSQLYDLFNQM-G----QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96 (467)
Q Consensus 50 ~~~e~~l~~~f~~~-G----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 96 (467)
.++.+||++-+.+. - .|.-..+-..-.+|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 57788888877654 2 2332333344556788899988 777776654
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=50.91 E-value=12 Score=30.74 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=50.2
Q ss_pred cCeEEEcCCCCCCCHH-----HHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc-eee
Q 012257 39 STSLYVGDLDLSVNDS-----QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-PIR 112 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~-----~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~~~ 112 (467)
.+++.+.+|+..+-.+ .-..+|..|.+..-..+++. .+..-|.|.+++.|.+|...++...|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4567777887654322 22456666655444444433 34677999999999999999999999888 777
Q ss_pred eeecc
Q 012257 113 IMYSY 117 (467)
Q Consensus 113 v~~~~ 117 (467)
..++.
T Consensus 84 ~yfaQ 88 (193)
T KOG4019|consen 84 LYFAQ 88 (193)
T ss_pred EEEcc
Confidence 76654
No 238
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.58 E-value=19 Score=31.57 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=44.5
Q ss_pred CCceEEEecCCCC------------CCHHHHHHhhccCCceeEEEEeeCC------CCCc-----cceEE---------E
Q 012257 320 EGLNLYVKNLDDS------------ISDDKLKELFSEFGTITSCKVMRDP------NGIS-----RGSGF---------V 367 (467)
Q Consensus 320 ~~~~l~V~nlp~~------------~~~~~l~~~F~~~G~v~~v~i~~~~------~~~~-----~g~af---------V 367 (467)
...+|++.+||-. -+++.|+..|..||.|..|.|+.-. +|+. .||+| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3447888888743 3568999999999999998886432 3333 23433 4
Q ss_pred EcCCHHHHHHHHHHhCCcEe
Q 012257 368 AFSTAEEASKALTEMNGKMV 387 (467)
Q Consensus 368 ~f~~~~~A~~A~~~l~g~~~ 387 (467)
+|-.-..-..|+..|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 55444455567777777755
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.02 E-value=38 Score=31.67 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=44.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCc-eeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHH
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 381 (467)
..|-|.+.|...-.+||...|+.|++ =-+|+++.+ ..||-.|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 36889999999988999999999964 345666665 3899999999999999975
No 240
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.77 E-value=24 Score=33.76 Aligned_cols=9 Identities=22% Similarity=0.682 Sum_probs=4.5
Q ss_pred EEEeCCHHH
Q 012257 263 FVNFDDPDD 271 (467)
Q Consensus 263 fv~f~~~~~ 271 (467)
.|.|.+.+.
T Consensus 263 vvRFnS~~e 271 (483)
T KOG2236|consen 263 VVRFNSEEE 271 (483)
T ss_pred EEecCchhh
Confidence 355555444
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=47.89 E-value=44 Score=22.17 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHHHHHhhcccCCeeEEEEEECC
Q 012257 232 EDDLKKIFGEFGIITSTAVMRDA 254 (467)
Q Consensus 232 ~~~l~~~f~~~g~v~~~~~~~~~ 254 (467)
..+|++.|+..|.|.-+.+-.-.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcccc
Confidence 36899999999999877665543
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=44.92 E-value=28 Score=28.67 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=39.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC-CccccEEEEEecChHHHHHHHHHh
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l 101 (467)
++++.. +.+..-++|.++-+ |.+..|.+-+.... ..-+|..||+|.+.+.|...++..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 445554 33344455666665 78888888764322 245689999999999999988753
No 243
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=44.44 E-value=27 Score=30.97 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=36.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCce-eEEEEeeCCCCCccceEEEEcCCHH
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTI-TSCKVMRDPNGISRGSGFVAFSTAE 373 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v-~~v~i~~~~~~~~~g~afV~f~~~~ 373 (467)
.-|+++||+.++...||+..+.+-|.+ .++.+-- +.|-||++|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 359999999999999999999887654 3333322 3568999998765
No 244
>PRK11901 hypothetical protein; Reviewed
Probab=43.04 E-value=1.1e+02 Score=28.21 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=39.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEE--EEecChHHHHHHHHHhCC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY--VNYNAAHEATRALDELNF 103 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~af--V~f~~~~~A~~A~~~l~~ 103 (467)
=+|-|..+ -.++.|..|.++++ +..+++++..+.|+.- |.. =.|.+.++|+.|++.|-.
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 34555443 45788999998885 4667777765555432 322 258999999999998753
No 245
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=37.72 E-value=1e+02 Score=29.09 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCCCCCccCeEEEcCCCCC-CCHHHHHHHHhcC----CCeEEEEEEe
Q 012257 32 GDARQFVSTSLYVGDLDLS-VNDSQLYDLFNQM----GQVVSVRVCR 73 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~----G~v~~v~i~~ 73 (467)
.+....++.+|-|-|+.|+ +.-.+|.-.|+.| |.+..|.|+.
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 4445667889999999995 5668898888876 5788788764
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=37.59 E-value=60 Score=30.21 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=35.4
Q ss_pred EEEEecChHHHHHHHHHhCCcccCCceeeeeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHh
Q 012257 84 GYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFS 149 (467)
Q Consensus 84 afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 149 (467)
|||+|++.++|+.|.+.+... +++.+++..+... +-|.=.||.....+..+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP--------~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEP--------DDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCc--------ccccccccCCChHHHHHHHHHH
Confidence 799999999999999965443 2344455544322 2344466655555666665544
No 247
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=36.20 E-value=22 Score=32.05 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=39.5
Q ss_pred CCCCCcccCCCCCCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE
Q 012257 18 PSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV 71 (467)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i 71 (467)
|.=..-.+++=+-.|.....++.+..+.-+--..+|+||.-+.++||.|+.|.-
T Consensus 342 P~F~Elp~PPLELfDLDEtFSs~~~qLaq~tn~s~EedLefyi~kcg~Itgi~~ 395 (438)
T KOG3861|consen 342 PIFSELPAPPLELFDLDETFSSARSQLAQMTNQSKEEDLEFYIKKCGRITGIVD 395 (438)
T ss_pred cccccCCCCcchhccchhhcccHHHHHHHHhccCccHHHHHHHHHhhhheeeec
Confidence 333344444555666777777777777777778899999999999999987743
No 248
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=35.61 E-value=17 Score=33.99 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=53.2
Q ss_pred CCccCeEEEcCCCCCCCHH--------HHHHHHhc--CCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHH
Q 012257 36 QFVSTSLYVGDLDLSVNDS--------QLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~--------~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (467)
+..-|.+|+.+.......+ ++...|.. +++...|...++.....++|..|++|...+.|+++..
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3445778888888765555 89999998 6788899998888778888999999999999999985
No 249
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=35.35 E-value=1.5e+02 Score=30.83 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 012257 335 DDKLKELF 342 (467)
Q Consensus 335 ~~~l~~~F 342 (467)
|+.|+..+
T Consensus 230 e~~lk~~~ 237 (830)
T KOG1923|consen 230 ERSLKAIA 237 (830)
T ss_pred HHHHHHHH
Confidence 33444444
No 250
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=34.42 E-value=1.1e+02 Score=20.96 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=31.7
Q ss_pred CHHHHHHhhccCC-ceeEEEEeeCCCCCccceEEEEcC-CHHHHHHHHHHhCC
Q 012257 334 SDDKLKELFSEFG-TITSCKVMRDPNGISRGSGFVAFS-TAEEASKALTEMNG 384 (467)
Q Consensus 334 ~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~g~afV~f~-~~~~A~~A~~~l~g 384 (467)
.-.++.+.|+.+| ++.++.-.+.........-||+++ +.++..+|++.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3456777888886 566665544444444456678877 44555677777654
No 251
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.81 E-value=7.2 Score=37.89 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecc
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 389 (467)
..++|++.|+++.++..+|..+++.+-.+..+-+.... ...-..+.+|+|+-.-.-..|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 44579999999999999999999998666665544332 12234478899988777777788888776643
No 252
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.84 E-value=1.5e+02 Score=23.77 Aligned_cols=56 Identities=13% Similarity=0.329 Sum_probs=41.0
Q ss_pred EEEecCCCCCCHHHHHHhhcc-CC-ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHH
Q 012257 324 LYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381 (467)
Q Consensus 324 l~V~nlp~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 381 (467)
-++.-++...+..+|++.++. |+ .|.+|..+..+.|. .-|||.+....+|......
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHh
Confidence 566667788899999998876 55 57788777766553 3799999887776655443
No 253
>PF14893 PNMA: PNMA
Probab=32.77 E-value=44 Score=31.12 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=21.5
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQ 62 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~ 62 (467)
..+.|.|.+||.++++++|.+.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3678999999999999999887754
No 254
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.05 E-value=37 Score=29.31 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=29.5
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEE
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS 68 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~ 68 (467)
.......+||+-|||...+++.|.++.+.+|-+..
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 34456889999999999999999999999985543
No 255
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.31 E-value=59 Score=30.43 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=44.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEE-ecCCCCc-cccEEEEEecChHHHHHHHHHhCCcc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVC-RDLSTRR-SLGYGYVNYNAAHEATRALDELNFTP 105 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~-v~~v~i~-~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~~~~ 105 (467)
-.++.|+.||+..+++++.+.+..+-. |...... -+..... -.+.|||.|...++........++..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 578999999999999999988877631 1111111 1111111 12579999999999777666655543
No 256
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=31.12 E-value=99 Score=25.60 Aligned_cols=58 Identities=26% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHHHhhccCCceeEEEEeeCCCC--CccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 336 DKLKELFSEFGTITSCKVMRDPNG--ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 336 ~~l~~~F~~~G~v~~v~i~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
++|.++-+ |.+..+...+..++ ..+|..||+|.+.+.|...+.. +.....-..|..++
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred HHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 34444444 78888777665544 5689999999999999887764 33344444555555
No 257
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.08 E-value=31 Score=29.82 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=28.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEE
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKV 353 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i 353 (467)
....+||+-|+|..++++.|..+.+..|-+..+-+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34558999999999999999999999986655443
No 258
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=30.98 E-value=71 Score=23.27 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=17.2
Q ss_pred cEEEEEecChHHHHHHHHHh
Q 012257 82 GYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 82 g~afV~f~~~~~A~~A~~~l 101 (467)
-|++++|.+.+++..|..++
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 58899999999998888765
No 259
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=11 Score=35.53 Aligned_cols=81 Identities=10% Similarity=0.018 Sum_probs=63.1
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhH
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
..++..++...+++++.-+|..||-|.-+.+-+.. .|...-.+||+-.+ .+|..++..+.-..+.|..++++++...-
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 35677888899999999999999999887765544 44455678888765 57888888888888889999999887554
Q ss_pred HHH
Q 012257 402 ERR 404 (467)
Q Consensus 402 ~~~ 404 (467)
..+
T Consensus 84 ~~r 86 (572)
T KOG4365|consen 84 EKR 86 (572)
T ss_pred hhh
Confidence 444
No 260
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.11 E-value=79 Score=29.65 Aligned_cols=67 Identities=12% Similarity=0.297 Sum_probs=49.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCc-eeEEEEeeCCC---CCccceEEEEcCCHHHHHHHHHHhCCcEec
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVMRDPN---GISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 388 (467)
..+.|.+||+..++++|.+-..+|-. |....+..... ..-.+.|+|.|...++-..-....+|+.|.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 36899999999999999988887643 33333332221 223678999999999988888888888775
No 261
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.63 E-value=2.1e+02 Score=22.97 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=38.6
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh
Q 012257 43 YVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 43 ~v~nLp~~~~e~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 101 (467)
|+--+...++-.+|.+.++. |+ .|..|..+.-+. |. --|||.+....+|......+
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHHhh
Confidence 33345678899999998886 56 677777665433 21 25999999888877655543
No 262
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.97 E-value=1.4e+02 Score=28.14 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=56.6
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHhhccC----CceeEEEEeeCCCCC--------------------------------
Q 012257 318 KFEGLNLYVKNLDD-SISDDKLKELFSEF----GTITSCKVMRDPNGI-------------------------------- 360 (467)
Q Consensus 318 ~~~~~~l~V~nlp~-~~~~~~l~~~F~~~----G~v~~v~i~~~~~~~-------------------------------- 360 (467)
...+..|-|-|+++ .+...+|...|+.| |.+..|.|.+..-|+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 44566799999985 56778888888755 678778776432100
Q ss_pred ----------------------------------ccceEEEEcCCHHHHHHHHHHhCCcEecc--cceEEeh
Q 012257 361 ----------------------------------SRGSGFVAFSTAEEASKALTEMNGKMVVS--KPLYVAL 396 (467)
Q Consensus 361 ----------------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 396 (467)
...||.|++.+.+.+.......+|..+.. ..+.+.|
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 13489999999999999999999988864 3445554
No 263
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=28.85 E-value=1.9e+02 Score=19.67 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecC---hHHHHHHHHHhC
Q 012257 53 DSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNA---AHEATRALDELN 102 (467)
Q Consensus 53 e~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~---~~~A~~A~~~l~ 102 (467)
-.+|.+.|+.+| .+..|.-...+. ......-||++.. ....+.+++.+.
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 468889999997 777774443332 2333466788874 556667777664
No 264
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.42 E-value=47 Score=19.29 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhcCC
Q 012257 49 LSVNDSQLYDLFNQMG 64 (467)
Q Consensus 49 ~~~~e~~l~~~f~~~G 64 (467)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998764
No 265
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.90 E-value=61 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.6
Q ss_pred eEEEEcCCHHHHHHHHHHhCCcEe
Q 012257 364 SGFVAFSTAEEASKALTEMNGKMV 387 (467)
Q Consensus 364 ~afV~f~~~~~A~~A~~~l~g~~~ 387 (467)
+.+|.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 789999999999999998876543
No 266
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=27.80 E-value=3.3e+02 Score=22.04 Aligned_cols=121 Identities=12% Similarity=0.193 Sum_probs=65.9
Q ss_pred HHHHHhcCC-CeEEEEEEecCCCCccccEEE-EEecChHHHHHHHHHh--CCc---ccCCceeeeeecccCcccccCCCc
Q 012257 56 LYDLFNQMG-QVVSVRVCRDLSTRRSLGYGY-VNYNAAHEATRALDEL--NFT---PLNGKPIRIMYSYRDPTIRKSGAG 128 (467)
Q Consensus 56 l~~~f~~~G-~v~~v~i~~~~~~~~~~g~af-V~f~~~~~A~~A~~~l--~~~---~~~g~~~~v~~~~~~~~~~~~~~~ 128 (467)
+.+-+++|| .|..|..-+++.+|.....-. ++..+.+.+++.++.+ +|. .++|++++...+
T Consensus 22 vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~~~~~~~~------------ 89 (170)
T COG2061 22 VLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGARLREKTD------------ 89 (170)
T ss_pred hhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCcCcceeEe------------
Confidence 345566776 888999988887654443322 3334455555555544 332 235555544332
Q ss_pred cEEEcCCCCcCCHHHHHHHHhhcC--CeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhc
Q 012257 129 NIFIKNLDKSIDNKALHDTFSTFG--NILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLN 189 (467)
Q Consensus 129 ~l~v~nlp~~~t~~~l~~~f~~~g--~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~ 189 (467)
.+.|+.+-..--.+.+ +.....| .|.+..+.+. .+|.+...--+.....+..++|+..++
T Consensus 90 vvLIGhiv~tdiqDTI-d~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ 152 (170)
T COG2061 90 VVLIGHIVHTDIQDTI-DRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLK 152 (170)
T ss_pred EEEEEeeecCcHHHHH-HHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHH
Confidence 4777765432222222 2233344 6777766654 555555333344456778888887664
No 267
>PRK10905 cell division protein DamX; Validated
Probab=27.76 E-value=2.2e+02 Score=26.20 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCc-cccEEEEEecChHHHHHHHHHhC
Q 012257 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNYNAAHEATRALDELN 102 (467)
Q Consensus 41 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~ 102 (467)
+|-|+. -.+++.|..|.+++|. ....++...+.|+ ..-.-+=.|.+.++|++|++.|-
T Consensus 249 TLQL~A---~Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 249 TLQLSS---SSNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred EEEEEe---cCCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 455544 4567889999888863 4555555555554 21122235899999999999874
No 268
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.72 E-value=72 Score=21.94 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=22.7
Q ss_pred EEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 83 YGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 83 ~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
+.+|.|.|..+|-+|-+.|....+..+-+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 67999999999999998887655544444
No 269
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.09 E-value=2e+02 Score=28.74 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=36.6
Q ss_pred HHHHHhhc----cCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC
Q 012257 336 DKLKELFS----EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (467)
Q Consensus 336 ~~l~~~F~----~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 383 (467)
-+|..+|. .+|.|.++.+...+....+...++.|.+.++|.+++..+.
T Consensus 204 ~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 204 FDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 46667664 6789999877665544455678899999999999998764
No 270
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.06 E-value=14 Score=34.85 Aligned_cols=78 Identities=9% Similarity=-0.149 Sum_probs=60.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
+.+.++..||..+++.++.-+|..||.|.-+...+.-..+...-.+||.- ...+|..++..+....+.|..+++..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~-~~~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHA-KKANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeee-eccCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45678889999999999999999999999888877766666555677754 3567788888777777778777775543
No 271
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.10 E-value=1.3e+02 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCCccccEEEEEecC
Q 012257 65 QVVSVRVCRDLSTRRSLGYGYVNYNA 90 (467)
Q Consensus 65 ~v~~v~i~~~~~~~~~~g~afV~f~~ 90 (467)
.|++|+|.+-...++-+++|=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47889998877778899999999976
No 272
>PRK11901 hypothetical protein; Reviewed
Probab=25.53 E-value=1.8e+02 Score=26.82 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=40.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEE--EcCCHHHHHHHHHHhCCcEe
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFV--AFSTAEEASKALTEMNGKMV 387 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV--~f~~~~~A~~A~~~l~g~~~ 387 (467)
...+|-+..+ ..++.|..|..+++ +..+++.... +|+. .|..| .|.+.++|.+|+..|-...-
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 3445666554 45788888888775 3445555443 4443 34443 59999999999998865443
No 273
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=25.52 E-value=2.5e+02 Score=20.39 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecC--hHHHHHHHHHhCC
Q 012257 54 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA--AHEATRALDELNF 103 (467)
Q Consensus 54 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~--~~~A~~A~~~l~~ 103 (467)
--|+++++..|+-.+|..+..+.++...+.++|-|.- .++.+..++.|+.
T Consensus 22 Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~ 73 (91)
T PF00585_consen 22 GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKA 73 (91)
T ss_dssp THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTS
T ss_pred cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHH
Confidence 3577788888877778777777777778899987754 4554666666654
No 274
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.27 E-value=2.3e+02 Score=18.72 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhC
Q 012257 53 DSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (467)
Q Consensus 53 e~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 102 (467)
-.+|.++|..+| .|.++........ ..+...+.++..++..++++.|.
T Consensus 15 L~~l~~~l~~~~i~i~~~~~~~~~~~--~~~~~~i~v~~~~~~~~~~~~L~ 63 (69)
T cd04909 15 IAEVTQILGDAGISIKNIEILEIREG--IGGILRISFKTQEDRERAKEILK 63 (69)
T ss_pred HHHHHHHHHHcCCCceeeEeEEeecC--CcEEEEEEECCHHHHHHHHHHHH
Confidence 467889999988 6777766554211 23455677766656666666553
No 275
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.23 E-value=2.3e+02 Score=18.68 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHHHHHhhccCC-ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcE
Q 012257 335 DDKLKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386 (467)
Q Consensus 335 ~~~l~~~F~~~G-~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 386 (467)
-.++-++|.+.| .|.++......+ ++..-+.+++.+.|.++++. +|..
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 456778887776 788887755422 35556667776677777654 4443
No 276
>PF14893 PNMA: PNMA
Probab=22.81 E-value=90 Score=29.11 Aligned_cols=53 Identities=6% Similarity=0.221 Sum_probs=31.7
Q ss_pred CccEEEcCCCCcCCHHHHHHHHhh-cCCeEEEEEeeC--CCCCceeEEEEEeCCHH
Q 012257 127 AGNIFIKNLDKSIDNKALHDTFST-FGNILSCKVATD--SLGQSRGYGFVQFDNEE 179 (467)
Q Consensus 127 ~~~l~v~nlp~~~t~~~l~~~f~~-~g~v~~~~~~~~--~~g~~~~~afV~f~~~~ 179 (467)
.+.|.|.+||.++++++|.+.++. .-.+-.+++... .......-|+|+|...-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 357999999999999999998764 222222222211 00112345777776543
No 277
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=22.63 E-value=4.2e+02 Score=26.10 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=53.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcC---CCeEEEEEEecCCCCccccEEE-EEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQM---GQVVSVRVCRDLSTRRSLGYGY-VNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~af-V~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
.++|.|..||+.+..+.+.+.+... +.+..|.=++|.++.. |..| |++....+++..+..|- .-..+...
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~--~vrivI~lk~~~~~~~~~~~L~----k~t~L~~s 298 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDRE--GIRFVIELKRGAMAEVVLNGLY----KVTKLQTT 298 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCC--ceEEEEEECCCccHHHHHHHHH----HhcCCcee
Confidence 3689999999999998887765432 4444444445554322 4555 56666666665555442 11222222
Q ss_pred ecccCcccccCCCccEEE-cCCCCcCCHHHHHHHHh
Q 012257 115 YSYRDPTIRKSGAGNIFI-KNLDKSIDNKALHDTFS 149 (467)
Q Consensus 115 ~~~~~~~~~~~~~~~l~v-~nlp~~~t~~~l~~~f~ 149 (467)
++. .-.++. .|-|...+-.+|...|=
T Consensus 299 ~~~---------Nm~~~~~~g~p~~~~l~~iL~~f~ 325 (445)
T cd00187 299 FGI---------NMVAFDPNGRPKKLNLKEILQEFL 325 (445)
T ss_pred eee---------eEEEEecCCeeEEeCHHHHHHHHH
Confidence 221 123445 56666666666665543
No 278
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=22.49 E-value=3.1e+02 Score=19.88 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHHhhccC-CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCC
Q 012257 335 DDKLKELFSEF-GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384 (467)
Q Consensus 335 ~~~l~~~F~~~-G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 384 (467)
.+.++++++.. |+++++.+... .......+++.|.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G---~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG---EYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC---CCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 35677778777 47888888764 3456889999999999888766553
No 279
>CHL00030 rpl23 ribosomal protein L23
Probab=22.46 E-value=2.1e+02 Score=20.92 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEec
Q 012257 42 LYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRD 74 (467)
Q Consensus 42 l~v~nLp~~~~e~~l~~~f~~-~G-~v~~v~i~~~ 74 (467)
-|+--++.+++..+|++.++. || .|..|....-
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 445556789999999999987 56 6777776653
No 280
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.32 E-value=3.9e+02 Score=20.95 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=42.1
Q ss_pred cCeEEEcCCCCC---CCHHHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc
Q 012257 39 STSLYVGDLDLS---VNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (467)
Q Consensus 39 ~~~l~v~nLp~~---~~e~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 105 (467)
...|.|+..... .+-..|++.++.-| .++++....+ ...|.|.+.++-.+|.+.++...
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L 97 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTL 97 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHc
Confidence 445666665433 56678999999888 5677655433 47899999999888888776443
No 281
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=22.27 E-value=1.1e+02 Score=20.38 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCeEEEEEEecCCCCccccEEEE
Q 012257 53 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 86 (467)
Q Consensus 53 e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 86 (467)
|.+|.++|-+-=.|.++.+..+|+-++ |.|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 456777776666899999998876544 55665
No 282
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.16 E-value=3.9e+02 Score=20.93 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=47.1
Q ss_pred eEEEecCCCC---CCHHHHHHhhccCC-ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 323 NLYVKNLDDS---ISDDKLKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 323 ~l~V~nlp~~---~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
.|.|+..... .+-..+.+....-| .++++..-.+ ...|.|++.++-.+|.+.|....=.+-.+.+..+.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~-------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND-------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC-------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 5777766332 46678888887776 4555554333 78899999999999988887655444556555554
No 283
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.87 E-value=1.7e+02 Score=21.52 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCCccccEEEEEecC
Q 012257 65 QVVSVRVCRDLSTRRSLGYGYVNYNA 90 (467)
Q Consensus 65 ~v~~v~i~~~~~~~~~~g~afV~f~~ 90 (467)
.|++|+|.+-...|+-+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47888888876678888999999876
No 284
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=21.23 E-value=1.8e+02 Score=25.21 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=0.0
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCccCcchhhhhHHH
Q 012257 409 AQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP--QVIYSFLLIDYFNALV 463 (467)
Q Consensus 409 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~p~~~pp--~~~~~~~~~~~~~~~~ 463 (467)
+.....+.+..++.+.+|..+++++..+....+|..+|+ ++..+|+..-....||
T Consensus 119 ~~~~f~~~p~~p~g~~pp~~~~gmpp~p~~~~~p~gmp~~~ppp~g~pp~~~pgv~m 175 (341)
T KOG2893|consen 119 QHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPGVYM 175 (341)
T ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
No 285
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.00 E-value=2.3e+02 Score=17.80 Aligned_cols=42 Identities=10% Similarity=0.312 Sum_probs=29.4
Q ss_pred HHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHH
Q 012257 54 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98 (467)
Q Consensus 54 ~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 98 (467)
.+|.+.+.+.| .|.++.+.... ...+...+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 56778888887 78888876643 23346677778877777765
No 286
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.40 E-value=2e+02 Score=26.63 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=18.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCc
Q 012257 171 GFVQFDNEESAKSAIDKLNGML 192 (467)
Q Consensus 171 afV~f~~~~~A~~a~~~l~~~~ 192 (467)
|||.|++..+|..|.+.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999998654433
No 287
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.38 E-value=3.4e+02 Score=19.69 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=29.5
Q ss_pred CHHHHHHhhccCC-ceeEEEEeeCCCCCccceEEEEcCC--HHHHHHHHHHhC
Q 012257 334 SDDKLKELFSEFG-TITSCKVMRDPNGISRGSGFVAFST--AEEASKALTEMN 383 (467)
Q Consensus 334 ~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~g~afV~f~~--~~~A~~A~~~l~ 383 (467)
.--++...|+.+| .+.++.-.+.........-||+++- .+...+|++.|.
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 3456777888886 4666655444333334466787773 344456666654
Done!